Mercurial > repos > lgueguen > sartools
diff make_html.py @ 0:581d217c7337 draft
Planemo upload
| author | lgueguen |
|---|---|
| date | Fri, 22 Jul 2016 05:39:13 -0400 |
| parents | |
| children | 05c9b1a7f44e |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/make_html.py Fri Jul 22 05:39:13 2016 -0400 @@ -0,0 +1,73 @@ +#Author: Loraine Gueguen + +import sys +import os +import time +import argparse + +def getfSize(fpath,outpath): + """ + format a nice file size string + """ + size = '' + fp = os.path.join(outpath,fpath) + if os.path.isfile(fp): + size = '0 B' + n = float(os.path.getsize(fp)) + if n > 2**20: + size = '%1.1f MB' % (n/2**20) + elif n > 2**10: + size = '%1.1f KB' % (n/2**10) + elif n > 0: + size = '%d B' % (int(n)) + return size + +# Define option +parser = argparse.ArgumentParser(description='Create an html page for downloading files from a directory') +parser.add_argument('--tool', help='Galaxy tool', required=True) +parser.add_argument('--output_type', help='figures or tables', required=True) +parser.add_argument('--output_dir', help='Output directory', required=True) +parser.add_argument('--output_html', help='Output HTML file name', default='', required=True) + +#Parse the command line +args = parser.parse_args() +tool=args.tool +output_type=args.output_type +output_dir=args.output_dir +output_html=args.output_html + + +debut_html="""<!DOCTYPE html> +<html> + <head> + <meta charset="utf-8" /> + <title></title> + </head> + <body> + <h1>Galaxy Tool %s</h1> +""" %(tool) + +fin_html="</body></html>" + +html=debut_html +run_date=time.strftime('%d/%m/%Y %H:%M:%S', time.localtime(time.time())) +html+='<div>Run at %s</div><br/>\n'%run_date +html+='<div><strong>%s</strong> available for downloading</div><br/>\n'%output_type + + +flist = os.listdir(output_dir) +flist.sort() + + +html+='<div><table cellpadding="3" cellspacing="3"><tr><th>Output File Name (click to view)</th><th>Size</th></tr>\n' + +for f in flist : + size=getfSize(f,output_dir) + html+='<tr><td><a href="%s">%s</a></td><td>%s</td></tr>\n'%(f,f,size) +html+='</table></div><br/>\n' + +html+=fin_html + +htmlf = file(output_html,'w') +htmlf.write(html) +htmlf.close()