diff test-data/SARTools_edgeR_T8vsT0.complete.txt @ 0:581d217c7337 draft

Planemo upload
author lgueguen
date Fri, 22 Jul 2016 05:39:13 -0400
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/SARTools_edgeR_T8vsT0.complete.txt	Fri Jul 22 05:39:13 2016 -0400
@@ -0,0 +1,10161 @@
+Id	T0.1	T0.5	T0.6	T4.1	T4.2	T4.3	T8.1	T8.2	T8.3	norm.T0-1	norm.T0-5	norm.T0-6	norm.T4-1	norm.T4-2	norm.T4-3	norm.T8-1	norm.T8-2	norm.T8-3	baseMean	T0	T4	T8	FC	log2FoldChange	pvalue	padj	tagwise.dispersion	trended.dispersion
+CADAFUBG00000001	151	131	183	31	35	44	19	31	18	108	102	116	39	49	41	27	41	26	60.93	109	43	31	0.29	-1.784	3.0284161168739e-15	4.79568971962673e-15	0.0155	0.0215
+CADAFUBG00000002	142	134	153	650	629	783	136	241	151	101	104	97	823	883	736	195	317	215	385.58	101	814	242	2.411	1.269	2.91168180032616e-10	4.11901125794288e-10	0.0225	0.0213
+CADAFUBG00000003	157	147	166	7	10	20	8	10	8	112	114	105	9	14	19	11	13	11	45.41	110	14	12	0.11	-3.184	1.24075253440832e-31	2.68387296267432e-31	0.0154	0.0179
+CADAFUBG00000004	275	249	342	70	44	91	75	64	62	197	193	216	89	62	86	107	84	88	124.59	202	79	93	0.461	-1.117	2.37946669484576e-08	3.21224266030544e-08	0.0198	0.0284
+CADAFUBG00000005	4	5	2	0	0	1	2	2	3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000006	2	0	1	0	1	2	7	3	3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000007	4	7	3	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000008	10	16	10	28	12	10	16	33	23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000009	12	20	24	74	84	77	10	10	9	9	16	15	94	118	72	14	13	13	40.39	13	95	13	1.024	0.034	0.92818180408743	0.932695644762104	0.0246	0.0146
+CADAFUBG00000010	269	262	379	112	132	138	44	33	48	192	203	239	142	185	130	63	43	68	140.69	211	152	58	0.275	-1.862	2.2892515975556e-15	3.63589507103914e-15	0.0266	0.0288
+CADAFUBG00000011	10065	9593	11955	4076	3739	4137	2736	3311	2749	7192	7439	7549	5161	5246	3890	3919	4350	3916	5406.87	7393	4766	4062	0.549	-0.865	3.43874369171954e-10	4.857423288402e-10	0.0133	0.0144
+CADAFUBG00000012	651	566	819	101	86	74	97	87	96	465	439	517	128	121	70	139	114	137	236.6	474	106	130	0.273	-1.871	1.16918880583303e-17	1.9484212909306e-17	0.0274	0.0265
+CADAFUBG00000013	118	116	150	18	24	42	15	8	5	84	90	95	23	34	39	21	11	7	44.9	90	32	13	0.146	-2.774	4.08564377827882e-23	7.54448273109759e-23	0.0173	0.0175
+CADAFUBG00000014	288	238	304	6	6	8	2	7	3	206	185	192	8	8	8	3	9	4	69.13	194	8	5	0.029	-5.098	1.54296040545672e-60	5.23911565566773e-60	0.0182	0.0236
+CADAFUBG00000015	18	31	39	4	4	7	2	6	2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000016	1	0	0	1	1	0	2	0	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000017	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000018	1	1	2	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000019	2	3	0	0	1	0	0	0	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000020	0	0	0	1	1	2	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000021	4	1	4	1	0	0	0	2	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000022	1	0	2	0	0	0	0	1	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000023	0	1	1	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000024	7	9	5	244	181	308	159	177	173	5	7	3	309	254	290	228	233	246	174.93	5	284	236	46.618	5.543	1.57897565198041e-86	7.73644056620278e-86	0.0196	0.0287
+CADAFUBG00000025	2	1	0	35	25	38	17	29	22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000026	602	535	669	1453	1042	1911	264	733	246	430	415	422	1840	1462	1797	378	963	350	895.29	422	1700	564	1.335	0.417	0.140293274860301	0.150391829310702	0.0555	0.0139
+CADAFUBG00000027	20	16	18	1	1	1	1	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000028	116	118	123	86	82	78	37	55	48	83	91	78	109	115	73	53	72	68	82.55	84	99	64	0.772	-0.372	0.101432629532381	0.109718315695567	0.0226	0.0249
+CADAFUBG00000029	21	23	29	2	2	1	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000030	6	6	11	3	2	2	12	11	13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000031	110	95	113	175	161	365	289	338	348	79	74	71	222	226	343	414	444	496	263.12	75	264	451	6.018	2.589	2.57645593108466e-39	6.32269054018892e-39	0.0205	0.0257
+CADAFUBG00000032	17	23	25	49	48	51	12	19	14	12	18	16	62	67	48	17	25	20	31.69	15	59	21	1.363	0.446	0.150548528861186	0.16100224701755	0.0129	0.0114
+CADAFUBG00000033	275	227	280	19	13	16	30	17	56	197	176	177	24	18	15	43	22	80	83.53	183	19	48	0.261	-1.936	3.30964486958559e-09	4.56184250348333e-09	0.0585	0.0255
+CADAFUBG00000034	18	13	22	87	96	131	339	102	457	13	10	14	110	135	123	486	134	651	186.17	12	123	424	33.815	5.08	2.43655337207892e-26	4.77313418729114e-26	0.1055	0.0285
+CADAFUBG00000035	14	6	10	43	51	45	228	125	352	10	5	6	54	72	42	327	164	501	131.29	7	56	331	46.174	5.529	5.60306045561903e-34	1.26087199674234e-33	0.0843	0.0284
+CADAFUBG00000036	23	22	29	3	4	12	4	5	4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000037	233	233	289	6	5	7	4	4	11	166	181	182	8	7	7	6	5	16	64.17	176	7	9	0.05	-4.313	1.11657205461701e-49	3.22982842052459e-49	0.0191	0.0227
+CADAFUBG00000038	64732	59582	73960	669	438	796	514	444	376	46254	46201	46704	847	615	748	736	583	536	15913.88	46386	737	618	0.013	-6.239	3.71808502714642e-253	2.10218570548002e-251	0.015	0.0158
+CADAFUBG00000039	2528	2347	3074	85	65	111	298	204	384	1806	1820	1941	108	91	104	427	268	547	790.29	1856	101	414	0.222	-2.171	8.06132225051426e-28	1.62056148353028e-27	0.0246	0.0145
+CADAFUBG00000040	3479	3303	4246	748	606	1016	692	551	673	2486	2561	2681	947	850	955	991	724	959	1461.66	2576	917	891	0.346	-1.532	5.12011847085837e-28	1.03388858408263e-27	0.0126	0.0128
+CADAFUBG00000041	2612	2445	3134	567	503	531	643	610	579	1866	1896	1979	718	706	499	921	801	825	1134.62	1914	641	849	0.442	-1.178	1.25320884379115e-16	2.04521017917606e-16	0.0133	0.0132
+CADAFUBG00000042	4933	3928	4716	5763	6014	8472	10757	8109	11172	3525	3046	2978	7297	8438	7965	15409	10653	15916	8358.59	3183	7900	13993	4.398	2.137	8.64681219801484e-37	2.0331245972569e-36	0.0187	0.0152
+CADAFUBG00000043	2073	1871	2268	721	561	1157	742	756	779	1481	1451	1432	913	787	1088	1063	993	1110	1146.44	1455	929	1055	0.725	-0.464	0.000611368105240142	0.000728218641224363	0.0123	0.0131
+CADAFUBG00000044	531	498	642	1168	1207	1416	1168	1231	1256	379	386	405	1479	1693	1331	1673	1617	1789	1194.93	390	1501	1693	4.336	2.116	3.44220661496864e-53	1.0493906934743e-52	0.0116	0.0131
+CADAFUBG00000045	3689	3415	4145	3517	3185	3263	2692	2689	3178	2636	2648	2617	4453	4469	3068	3856	3533	4528	3534.18	2634	3997	3972	1.511	0.595	0.000105633169186202	0.000129005464826804	0.0165	0.0136
+CADAFUBG00000046	1898	1750	2261	1724	1544	1391	801	1024	962	1356	1357	1428	2183	2166	1308	1147	1345	1371	1517.91	1380	1886	1288	0.934	-0.098	0.567308058769645	0.582769000366523	0.0203	0.0128
+CADAFUBG00000047	16183	14548	18553	487	515	515	1177	847	1909	11564	11281	11716	617	723	484	1686	1113	2720	4655.78	11520	608	1840	0.158	-2.662	9.64307242401316e-27	1.90380345536341e-26	0.0389	0.0141
+CADAFUBG00000048	808	762	983	11	4	28	57	43	81	577	591	621	14	6	26	82	56	115	232.04	596	15	84	0.14	-2.841	7.96267100534669e-29	1.63359261446525e-28	0.0349	0.0266
+CADAFUBG00000049	2235	1956	2293	1294	1115	2690	286	401	343	1597	1517	1448	1638	1564	2529	410	527	489	1302.1	1521	1910	475	0.31	-1.689	4.5871386404699e-23	8.45237338683498e-23	0.0184	0.0129
+CADAFUBG00000050	2297	2036	2533	2473	2041	3122	1807	1900	1934	1641	1579	1600	3131	2864	2935	2588	2496	2755	2398.85	1607	2977	2613	1.627	0.702	5.48486982799049e-10	7.70841722023716e-10	0.0087	0.013
+CADAFUBG00000051	1438	1298	1621	1753	1483	2235	2291	2514	2160	1028	1006	1024	2220	2081	2101	3282	3303	3077	2124.57	1019	2134	3221	3.158	1.659	3.96542509378339e-50	1.15521570359235e-49	0.008	0.0129
+CADAFUBG00000052	1442	1241	1412	973	884	1082	627	698	591	1030	962	892	1232	1240	1017	898	917	842	1003.45	961	1163	886	0.923	-0.116	0.343716521664257	0.359267792165243	0.0096	0.0135
+CADAFUBG00000053	3109	3002	3658	5321	5346	6208	3864	4368	4342	2222	2328	2310	6737	7501	5837	5535	5739	6186	4932.6	2287	6692	5820	2.545	1.348	2.54830826831271e-24	4.80582867190683e-24	0.012	0.0142
+CADAFUBG00000054	4244	3914	4997	838	769	1325	1330	1229	1457	3033	3035	3156	1061	1079	1246	1905	1615	2076	2022.7	3075	1129	1865	0.606	-0.722	7.13750164721430e-09	9.75503962407119e-09	0.0106	0.0128
+CADAFUBG00000055	18539	16716	20087	447	299	482	1140	1085	1040	13247	12962	12685	566	420	453	1633	1425	1482	4985.8	12965	480	1513	0.117	-3.1	1.91265086284461e-111	1.30248189503063e-110	0.0114	0.0142
+CADAFUBG00000056	643	617	794	1628	1622	1719	627	853	687	459	478	501	2061	2276	1616	898	1121	979	1154.46	479	1984	999	2.082	1.058	4.26773290333106e-12	6.30078965319139e-12	0.0151	0.0131
+CADAFUBG00000057	940	826	1157	2643	2247	3281	1414	1637	1554	672	640	731	3347	3153	3085	2025	2151	2214	2001.87	681	3195	2130	3.126	1.645	3.49747394440417e-42	8.9830517269006e-42	0.0093	0.0128
+CADAFUBG00000058	542	487	604	2582	2282	3027	1645	1626	1544	387	378	381	3269	3202	2846	2356	2136	2200	1906.17	382	3106	2231	5.831	2.544	8.65920713987264e-93	4.59365593580651e-92	0.0091	0.0128
+CADAFUBG00000059	200	215	261	413	361	482	179	202	187	143	167	165	523	507	453	256	265	266	305.03	158	494	262	1.661	0.732	1.00163897628854e-05	1.26070377302632e-05	0.0148	0.0241
+CADAFUBG00000060	147	170	218	303	287	321	176	218	156	105	132	138	384	403	302	252	286	222	247.05	125	363	253	2.027	1.019	2.97487795185472e-07	3.89727151192674e-07	0.0226	0.0263
+CADAFUBG00000061	79	67	82	192	201	339	131	141	107	56	52	52	243	282	319	188	185	152	169.93	53	281	175	3.277	1.712	1.29772472674554e-16	2.11625167014254e-16	0.0201	0.0288
+CADAFUBG00000062	2829	2496	3147	1022	775	1355	1316	1332	1212	2021	1935	1987	1294	1087	1274	1885	1750	1727	1662.36	1981	1218	1787	0.902	-0.15	0.209245622731369	0.221514767400023	0.0097	0.0128
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+CADAFUBG00000064	1109	1087	1343	79	76	81	195	243	203	792	843	848	100	107	76	279	319	289	406	828	94	296	0.358	-1.483	1.39025246383692e-20	2.45083685624912e-20	0.0152	0.0205
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+CADAFUBG00000068	0	1	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000069	72	59	67	307	236	498	1675	1281	1527	51	46	42	389	331	468	2399	1683	2175	842.81	46	396	2086	44.79	5.485	1.33246847170315e-149	1.45136046208072e-148	0.0191	0.0142
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+CADAFUBG00000072	3	3	1	9	12	16	8	5	2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000073	1	2	4	33	19	39	20	23	20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000074	10	7	4	11	22	16	5	3	6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000075	4	1	4	12	8	8	8	10	5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000076	4	5	10	3	3	5	2	7	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000077	10	4	8	1	0	4	12	0	13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000078	133	104	123	5	4	8	14	8	29	95	81	78	6	6	8	20	11	41	38.3	85	7	24	0.279	-1.844	1.50488315161389e-09	2.0964444488523e-09	0.0366	0.0153
+CADAFUBG00000079	69	75	84	5	0	2	8	3	8	49	58	53	6	0	2	11	4	11	21.72	53	3	9	0.167	-2.585	1.10248549025163e-17	1.83797484058633e-17	0.0104	0.0087
+CADAFUBG00000080	389	357	455	6	2	7	3	1	4	278	277	287	8	3	7	4	1	6	96.71	281	6	4	0.014	-6.196	1.53555653095358e-79	6.73638224962484e-79	0.0192	0.0271
+CADAFUBG00000081	9	8	9	3	0	2	5	1	4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000082	41	26	45	13	25	32	73	73	81	29	20	28	16	35	30	105	96	115	52.82	26	27	105	4.017	2.006	1.57148831054395e-18	2.66588443363891e-18	0.0185	0.0183
+CADAFUBG00000083	2	2	5	1	1	1	3	3	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
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