Mercurial > repos > lgueguen > sartools

diff template_script_DESeq2_CL.r @ 4:05c9b1a7f44e draft default tip

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Uploaded new release 1.7.3
author lgueguen
date Thu, 07 Jan 2021 11:12:01 +0000
parents de6d0b7c17af
children
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--- a/template_script_DESeq2_CL.r	Mon Oct 01 05:07:56 2018 -0400
+++ b/template_script_DESeq2_CL.r	Thu Jan 07 11:12:01 2021 +0000
@@ -184,6 +184,7 @@
 save.image(file=paste0(projectName, ".RData"))
 
 # generating HTML report
+Sys.setenv(HOME = getwd())
 writeReport.DESeq2(target=target, counts=counts, out.DESeq2=out.DESeq2, summaryResults=summaryResults,
                    majSequences=majSequences, workDir=workDir, projectName=projectName, author=author,
                    targetFile=targetFile, rawDir=rawDir, featuresToRemove=featuresToRemove, varInt=varInt,