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1 <tool id="interleave" name="interleave fastqs" version="0.1.0">
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2 <description>takes two fastq or fastq.gz files and interleaves them</description>
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3 <requirements>
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4 <requirement type="package" version="4.0.2">mira4_assembler</requirement>
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5 </requirements>
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6 <stdio>
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7 <exit_code range="1:" />
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8 </stdio>
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9 <command><![CDATA[
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10 /home/lijing/galaxy/tools/ngs_mapping/interleave-fastqgz-MITOBIM.py
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11 $fastq1 $fastq2 > $output1
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12 ]]></command>
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13 <inputs>
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14 <param type="data" name="fastq1" format="fastqsanger,fastq"
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15 label="Paire end forward read" />
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16 <param type="data" name="fastq2" format="fastqsanger,fastq"
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17 label="Paire end reverse read" />
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18 </inputs>
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19 <outputs>
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20 <data name="output1" format="fastqsanger" />
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21 </outputs>
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22
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23 <help><![CDATA[
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24
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25 This script takes two fastq or fastq.gz files and interleaves them
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26
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27 Usage:
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28 interleave-fastqgz-MITOBIM.py fastq1 fastq2 > out.fastq
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29
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30 ]]></help>
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31
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32 </tool>
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