diff interleave.xml @ 4:7f94bf630447 draft

interleave

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/interleave.xml	Thu Nov 02 12:37:35 2017 -0400
@@ -0,0 +1,32 @@
+<tool id="interleave" name="interleave fastqs" version="0.1.0">
+    <description>takes two fastq or fastq.gz files and interleaves them</description>
+    <requirements>
+        <requirement type="package" version="4.0.2">mira4_assembler</requirement>
+    </requirements>
+    <stdio>
+        <exit_code range="1:" />
+    </stdio>
+    <command><![CDATA[
+        /home/lijing/galaxy/tools/ngs_mapping/interleave-fastqgz-MITOBIM.py
+        	$fastq1 $fastq2 > $output1
+    ]]></command>
+    <inputs>
+        <param type="data" name="fastq1" format="fastqsanger,fastq" 
+        	   label="Paire end forward read" />
+        <param type="data" name="fastq2" format="fastqsanger,fastq" 
+        	   label="Paire end reverse read" />
+    </inputs>
+    <outputs>
+        <data name="output1" format="fastqsanger" />
+    </outputs>
+
+    <help><![CDATA[
+        
+This script takes two fastq or fastq.gz files and interleaves them
+
+Usage:
+    interleave-fastqgz-MITOBIM.py fastq1 fastq2 > out.fastq
+
+    ]]></help>
+
+</tool>