comparison tool_dependencies.xml @ 0:54963002aaeb draft default tip

Initial commit

0:54963002aaeb

<?xml version="1.0"?>
<tool_dependency>
    <package name="hmmer" version="2.3.2">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://selab.janelia.org/software/hmmer/2.3.2/hmmer-2.3.2.tar.gz</action>
                <!-- Make -->
		<action type="shell_command">./configure --prefix=$INSTALL_DIR --enable-threads</action>
		<action type="shell_command">make</action>
		<action type="shell_command">make install</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
This installs hmmer 2.3.2, the last stable version of the 2.x branch.
See http://hmmer.janelia.org/ for more details. Compiled with --enable-threads for compatibility with rnammer.
        </readme>
    </package>
</tool_dependency>