Mercurial > repos > lionelguy > package_hmmer_2_3_2

changeset 0:54963002aaeb draft default tip

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Initial commit
author lionelguy
date Thu, 15 Aug 2013 04:28:43 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 22 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Aug 15 04:28:43 2013 -0400
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="hmmer" version="2.3.2">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://selab.janelia.org/software/hmmer/2.3.2/hmmer-2.3.2.tar.gz</action>
+                <!-- Make -->
+		<action type="shell_command">./configure --prefix=$INSTALL_DIR --enable-threads</action>
+		<action type="shell_command">make</action>
+		<action type="shell_command">make install</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+This installs hmmer 2.3.2, the last stable version of the 2.x branch.
+See http://hmmer.janelia.org/ for more details. Compiled with --enable-threads for compatibility with rnammer.
+        </readme>
+    </package>
+</tool_dependency>
+