# HG changeset patch # User lionelguy # Date 1378460329 14400 # Node ID 2720b1e27a9c03b5203ad3944a973bc30e2f558e # Parent 37e2aeda27f4c5856b45dd306c5aedf2d7c40787 Added dependency for infernal diff -r 37e2aeda27f4 -r 2720b1e27a9c prokka.xml --- a/prokka.xml Fri Sep 06 02:50:44 2013 -0400 +++ b/prokka.xml Fri Sep 06 05:38:49 2013 -0400 @@ -6,7 +6,7 @@ prodigal package_barrnap_0_1 - + infernal hmmer blast+ tbl2asn diff -r 37e2aeda27f4 -r 2720b1e27a9c readme.rst --- a/readme.rst Fri Sep 06 02:50:44 2013 -0400 +++ b/readme.rst Fri Sep 06 05:38:49 2013 -0400 @@ -9,7 +9,6 @@ Note ---- -- **infernal** >= 1.1rc4 is an optional dependency to find non-coding RNAs. An executable is shipped with prokka. - **SignalP** >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, no automatic dependency is managed. - **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the NCBI ftp site ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/. - **BioPerl** >= 1.6 is required, but the dependency is not managed here, although it might in future. diff -r 37e2aeda27f4 -r 2720b1e27a9c tool_dependencies.xml --- a/tool_dependencies.xml Fri Sep 06 02:50:44 2013 -0400 +++ b/tool_dependencies.xml Fri Sep 06 05:38:49 2013 -0400 @@ -15,9 +15,9 @@ - + + + -->