Mercurial > repos > lionelguy > spades
comparison tools/spades_3_5_0/spades.xml @ 14:21734680d921 draft default tip
Uploaded
| author | takadonet |
|---|---|
| date | Fri, 27 Feb 2015 11:21:41 -0500 |
| parents | 85c6121d92a5 |
| children |
comparison
equal
deleted
inserted
replaced
| 13:89004d4f8dd3 | 14:21734680d921 |
|---|---|
| 42 #elif str( $library.lib_type ) == "mate_paired": | 42 #elif str( $library.lib_type ) == "mate_paired": |
| 43 #set prefix = 'mp' | 43 #set prefix = 'mp' |
| 44 #elif str( $library.lib_type ) == "nxmate_paired": | 44 #elif str( $library.lib_type ) == "nxmate_paired": |
| 45 #set prefix = 'nxmate' | 45 #set prefix = 'nxmate' |
| 46 #else: | 46 #else: |
| 47 #$set prefix = 'hqmp' | 47 #set prefix = 'hqmp' |
| 48 #end if | 48 #end if |
| 49 --$prefix$num-$library.orientation | 49 --$prefix$num-$library.orientation |
| 50 #for $file in $library.files | 50 #for $file in $library.files |
| 51 #if $file.file_type.type == "separate" | 51 #if $file.file_type.type == "separate" |
| 52 --$prefix$num-1 fastq:$file.file_type.fwd_reads | 52 --$prefix$num-1 fastq:$file.file_type.fwd_reads |