Mercurial > repos > lionelguy > spades
comparison tools/spades_3_1_1/CHANGE @ 12:85c6121d92a5 draft
Uploaded
| author | takadonet |
|---|---|
| date | Tue, 16 Dec 2014 12:57:49 -0500 |
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| 11:1027f26f52d5 | 12:85c6121d92a5 |
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| 1 1.0 | |
| 2 === | |
| 3 - Supports SPAdes 3.5.0 | |
| 4 - New MismatchCorrector module. | |
| 5 - Support for Oxford Nanopore long reads. | |
| 6 - Support for Lucigen NxMate mate-pair libraries. | |
| 7 - Possibility to specify coverage cutoff: automatic and manual. | |
| 8 - CHANGE: Better running time. | |
| 9 - CHANGE: Improved RAM consumption. | |
| 10 - CHANGE: High-quality mate-pairs are now assumed to have forward-revers orientation (same as paired-end). | |
| 11 | |
| 12 FIX: Fixed FASTG format. | |
| 13 0.9 | |
| 14 === | |
| 15 - Supports SPAdes 3.1.1 | |
| 16 - Supports Mate-pair only assembly with high-quality libraries | |
| 17 - Added support for List Paired Collection for files in a library. | |
| 18 - Renaming of contig names in scaffolds and contig files if List Paired Collection given | |
| 19 | |
| 20 0.7 | |
| 21 === | |
| 22 (thanks to Nicola Soranzo for fixing these bugs) | |
| 23 - spades.pl doesn't die when NODE number is 0 | |
| 24 - removed the --rectangles option (will be deprecated in SPAdes 2.6), because it uses a different seqid format | |
| 25 - switched the --threads parameter to $GALAXY_SLOTS | |
| 26 - a few minor improvements | |
| 27 | |
| 28 0.6 | |
| 29 === | |
| 30 - Supports SPAdes 2.5.1 | |
| 31 - Disables gzipped output for corrected reads | |
| 32 - Removes the hack that was necessary to accept .dat files (thanks to SPAdes | |
| 33 new input format | |
| 34 - Adds licensing information | |
| 35 | |
| 36 (started at version 0.6) |