comparison tools/spades_2_5/filter_spades_output.xml @ 7:95ddc2380130 draft

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6:1b1af74a54ae

    </data>
  </outputs>
  <help>
**What it does**

Using the output of SPAdes (a fasta and stats file, either from contigs or scaffolds), it filters the fasta files, discarding all sequences that are under a given length or under a given coverage.

Typically, this is used to discard short contigs, or contaminations. To dispaly a coverage vs. length plot, use the "SPAdes stats" tool in the same package.
  </help>
</tool>

7:95ddc2380130

    </data>
  </outputs>
  <help>
**What it does**

Using the output of SPAdes (a fasta and a stats file, either from contigs or scaffolds), it filters the fasta files, discarding all sequences that are under a given length or under a given coverage.

Typically, this is used to discard short contigs, or contaminations. To display a coverage vs. length plot, use the "SPAdes stats" tool in the same package.
  </help>
</tool>