Mercurial > repos > lionelguy > spades
view CHANGE @ 14:21734680d921 draft default tip
Uploaded
author | takadonet |
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date | Fri, 27 Feb 2015 11:21:41 -0500 |
parents | 85c6121d92a5 |
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1.0 === - Supports SPAdes 3.5.0 - New MismatchCorrector module. - Support for Oxford Nanopore long reads. - Support for Lucigen NxMate mate-pair libraries. - Possibility to specify coverage cutoff: automatic and manual. - CHANGE: Better running time. - CHANGE: Improved RAM consumption. - CHANGE: High-quality mate-pairs are now assumed to have forward-revers orientation (same as paired-end). FIX: Fixed FASTG format. 0.9 === - Supports SPAdes 3.1.1 - Supports Mate-pair only assembly with high-quality libraries - Added support for List Paired Collection for files in a library. - Renaming of contig names in scaffolds and contig files if List Paired Collection given 0.7 === (thanks to Nicola Soranzo for fixing these bugs) - spades.pl doesn't die when NODE number is 0 - removed the --rectangles option (will be deprecated in SPAdes 2.6), because it uses a different seqid format - switched the --threads parameter to $GALAXY_SLOTS - a few minor improvements 0.6 === - Supports SPAdes 2.5.1 - Disables gzipped output for corrected reads - Removes the hack that was necessary to accept .dat files (thanks to SPAdes new input format - Adds licensing information (started at version 0.6)