Mercurial > repos > lldelisle > cooler_balance
view macros.xml @ 0:8f71aaf6e59d draft
planemo upload for repository https://github.com/lldelisle/tools-lldelisle/blob/master/tools/cooler/.shed.yml commit 67c1d2510db398d4f942bb59aca520fdf9cbe296
author | lldelisle |
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date | Mon, 24 Oct 2022 15:20:46 +0000 |
parents | |
children | 9655af207032 |
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<macros> <token name="@VERSION@">0.8.11</token> <xml name="requirements"> <requirements> <requirement type="package" version="1.16">htslib</requirement> <requirement type="package" version="3.7.0">h5py</requirement> <requirement type="package" version="@VERSION@">cooler</requirement> </requirements> </xml> <xml name="stdio"> <stdio> <!-- Anything other than zero is an error --> <exit_code range="1:" /> <exit_code range=":-1" /> <!-- In case the return code has not been set propery check stderr too --> <regex match="Error:" /> <regex match="Exception:" /> </stdio> <version_command>cooler --version</version_command> </xml> <xml name="size_macro"> <conditional name="size_source"> <param name="size_source_selector" type="select" label="Choose the source for the chromosome sizes"> <option value="cached">Locally cached</option> <option value="history">History</option> </param> <when value="cached"> <param name="fasta_cached" type="select" label="Fasta availables"> <options from_data_table="fasta_indexes"> <validator type="no_options" message="No cached fasta is available"/> </options> </param> </when> <when value="history"> <param name="chromosomeSize" multiple="false" type="data" format="tabular" label="Select a file with the size of chromosome (One column with the chromosome names in the desired order, one column with the sizes)."/> </when> </conditional> </xml> <xml name="citation_cooler"> <citations> <citation type="doi">10.1093/bioinformatics/btz540</citation> </citations> </xml> </macros>