Mercurial > repos > lldelisle > incucyte_stack_and_upload_omero

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planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit de447190f0743b7f6a3b85e13f712fc07682af3c
author lldelisle
date Thu, 21 Dec 2023 17:04:46 +0000
parents e1cba36becb2
children
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e1cba36becb2 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364
lldelisle
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1 I don't know why but I need to run the macro once on GUI before being able to run it in CLI...
e1cba36becb2 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364
lldelisle
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2 ```bash
e1cba36becb2 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364
lldelisle
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3 ssh -Y updubsrv1
e1cba36becb2 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364
lldelisle
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4 . '/data/galaxy/galaxy/var/dependencies/_conda/bin/activate' /data/galaxy/galaxy/var/dependencies/_conda/envs/mulled-v1-db2fcfa8be636326417c50715ab9fec065adbfde66cca33b4958bee1dd8ad945/
e1cba36becb2 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364
lldelisle
parents:
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5 sudo chmod -R 777 /data/galaxy/galaxy/var/dependencies/_conda/envs/mulled-v1-db2fcfa8be636326417c50715ab9fec065adbfde66cca33b4958bee1dd8ad945/bin/../uprefs/
e1cba36becb2 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364
lldelisle
parents:
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6 ImageJ
e1cba36becb2 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364
lldelisle
parents:
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7 # I need to check what changed in uprefs
e1cba36becb2 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364
lldelisle
parents:
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8
e1cba36becb2 planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364
lldelisle
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9 ```