Mercurial > repos > lldelisle > omero_get_children_ids
diff omero_get_children_ids.xml @ 1:82f2efb46200 draft default tip
planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_get_children_ids commit 3a5c830ad68e29c5e9f91edffa0a548c77aac141
author | lldelisle |
---|---|
date | Mon, 17 Jun 2024 08:05:48 +0000 |
parents | b0876c73076b |
children |
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--- a/omero_get_children_ids.xml Fri Dec 22 12:55:40 2023 +0000 +++ b/omero_get_children_ids.xml Mon Jun 17 08:05:48 2024 +0000 @@ -1,7 +1,7 @@ <tool id="omero_get_children_ids" name="Omero" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01" license="MIT"> <description>Get children ids</description> <macros> - <token name="@TOOL_VERSION@">0.1.0</token> + <token name="@TOOL_VERSION@">0.2.0</token> <token name="@VERSION_SUFFIX@">0</token> </macros> <requirements> @@ -29,6 +29,7 @@ --omero-id '$omero_object.omero_id' --final-object-type '$omero_object.final_object_type' --output '$output' + $get_name ]]></command> <configfiles> <configfile name="credentials"><![CDATA[ @@ -105,6 +106,7 @@ </param> </when> </conditional> + <param name="get_name" type="boolean" truevalue="--get-name" falsevalue="" checked="false" label="Retrieve names into a second column" /> </inputs> <outputs> <data name="output" format="tabular" label="All ${omero_object.final_object_type} from ${omero_object.parent_object_type} ID ${omero_object.omero_id}" /> @@ -131,6 +133,23 @@ <param name="omero_instance" value="idr"/> </conditional> <conditional name="omero_object"> + <param name="parent_object_type" value="well"/> + <param name="omero_id" value="2184933"/> + <param name="final_object_type" value="image"/> + </conditional> + <param name="get_name" value="true"/> + <output name="output"> + <assert_contents> + <has_text text="003012001.flex [Well A-1; Field #1]"/> + <has_n_lines n="4"/> + </assert_contents> + </output> + </test> + <test expect_num_outputs="1"> + <conditional name="omero_instance_type"> + <param name="omero_instance" value="idr"/> + </conditional> + <conditional name="omero_object"> <param name="parent_object_type" value="plate"/> <param name="omero_id" value="10055"/> <param name="final_object_type" value="image"/> @@ -263,5 +282,7 @@ This tool will create a file with the list of all children ids of a given omero object. +If the option is set, it can also retrive the names. + ]]></help> </tool> \ No newline at end of file