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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author lpantano
date Tue, 07 Jun 2011 17:28:09 -0400
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>cel-let-7 (-42.90)   [cel-let-7:17-38] [cel-let-7*:56-80]

------uaca    gga             U              ---  aaua 
          cugu   uccggUGAGGUAG AGGUUGUAUAGUUu   gg    u
          ||||   ||||||||||||| ||||||||||||||   ||     
          gaca   aggcCAUUCCAUC UUUAACGUAUCAAG   cc    u
agcuucucaa    --g             U              Ugg  acca 

>cel-lin-4 (-41.80)   [cel-lin-4:16-36] [cel-lin-4*:55-75]

--a     ---   g    -uU   U    C    A       u   - u 
   ugcuu   ccg ccug   CCC GAGA CUCA GUGUGAg gua c a
   |||||   ||| ||||   ||| |||| |||| ||||||| ||| |  
   acgag   ggc ggac   GGG CUCU GGGU CACAcuu cgu g u
uag     uuu   a    CAU   C    C    C       -   a u 

>cel-mir-1 (-41.40)   [cel-miR-1:61-81]

aaagug    ua   ag           c      gc     -    au 
      accg  ccg  cugcauacuuc uuacau  ccaua cuau  c
      ||||  |||  ||||||||||| ||||||  ||||| ||||  a
      uggu  ggc  gAUGUAUGAAG AAUGUA  GGUau ggua  u
---uga    gg   aa           A      -A     a    aa 

>cel-mir-2 (-38.40)   [cel-miR-2:61-83]

uaa     -au    aa   -         -   ggu       -uu -  a 
   acagu   acag  agc caucaaagc ggu   ugaugug   g ca a
   |||||   ||||  ||| ||||||||| |||   |||||||   | || u
   uguca   uguc  uCG GUAGUUUCG CCG   ACUAUac   c gu u
---     cgu    cg   U         A   -AC       uuu a  a 

>cel-mir-34 (-37.00)   [cel-miR-34:16-37] [cel-miR-34*:53-74]

--------c    --a   c   -a A       -U   U     G   -  uau 
         ggac   aug ucg  g GGCAGUG  GGU AGCUG UUG ca   u
         ||||   ||| |||  | |||||||  ||| ||||| ||| ||    
         ccug   uac agc  C CCGUCAC  CCA UCGGC Aac gu   u
aaguuucua    cug   a   CC A       UU   -     -   a  ucc 

>cel-mir-35 (-54.30)   [cel-miR-35:61-82]

ucuc   uc                       u  a a      c   cc 
    gga  agaucgagccauugcugguuucu cc c guggua uuu  a
    |||  ||||||||||||||||||||||| || | |||||| |||   
    ccu  ucuagcucggUGACGAUCAAAGG GG G CACUau aag  u
----   uu                       U  - C      c   au 

>cel-mir-36 (-50.30)   [cel-miR-36:61-82]

ca    u        a   c  c           ca   c     - au 
  ccgc gucgggga ccg gc aauuuucgcuu  gug uagac c  c
  |||| |||||||| ||| || |||||||||||  ||| ||||| |  c
  ggcg cagccccu gGU CG UUAAAAGUGGG  CAC aucug g  a
-a    -        g   A  C           -C   U     u aa 

>cel-mir-37 (-44.70)   [cel-miR-37*:22-42] [cel-miR-37:61-82]

uucu       - uu      g  UG     CCGU G     C    uucu 
    agaaacc c  ggacca UG  GGUGU    U CGGUG uaca    c
    ||||||| |  |||||| ||  |||||    | ||||| ||||     
    ucuuugg g  ccuggU AC  UCACA    G GCCAC augu    u
----       u cu      G  GU     -AGU G     U    cuaa 

>cel-mir-38 (-50.10)   [cel-miR-38:61-82]

ucu     - -                    uc g        -ac  auc 
   gugag c cagguccuguuccgguuuuu  c uggugaua   gc   c
   ||||| | ||||||||||||||||||||  | ||||||||   ||    
   uacuc g guccaggaUGAGGUCAAAAA  G GCCACUau   ug   a
---     a u                    GA G        cuc  aaa 

>cel-mir-39 (-43.30)   [cel-miR-39:55-76]

u     g      c         -  u      a    g    u 
 auacc agagcc agcugauuu cg cuuggu auaa cucg c
 ||||| |||||| ||||||||| || |||||| |||| ||||  
 ugugg ucucgG UCGACUAAA GU GGGCCA Uauu gagu a
c     -      U         U  -      C    a    u 

>cel-mir-40 (-46.20)   [cel-miR-40:56-77]

u     --        c   g          a  a     a   au 
 ccugu  ccgcaccu agu gauguaugcc ug ugaua gau  c
 |||||  |||||||| ||| |||||||||| || ||||| |||  a
 ggaca  ggcguggA UCG CUACAUGUGG GC ACUau cua  g
u     ug        A   A          -  C     c   aa 

>cel-mir-41 (-40.93)   [cel-miR-41:61-82]

----  g   cag      u           -    ca       auacuuc 
    gg ucc   agaccu ggugguuuuuc ucug  gugauag       u
    || |||   |||||| ||||||||||| ||||  |||||||       a
    cc agg   ucuggA CCACUAAAAAG GGGC  CACUauc       a
uccu  g   ---      U           U    --       gcucaac 

>cel-mir-42 (-41.70)   [cel-miR-42*:14-38] [cel-miR-42:60-81]

----uucgc                 U   UUUU        ---uu  cuu 
         ggaccuuuGUGGGUGUU GCU    CGGUGAAG     gu   c
         ||||||||||||||||| |||    ||||||||     ||    
         ccuggAGACAUCUACAA UGG    GCCACUuc     cg   c
ggggaaaaa                 U   ----        uucuu  aug 

>cel-mir-43 (-47.00)   [cel-miR-43:61-83]

-ua ug    uagu           u    -     a     u   -  aaa 
   u  gcac    cgcccgugaca caag aaacu gugau aug cc   c
   |  ||||    ||||||||||| |||| ||||| ||||| ||| ||   c
   a  cgug    gcgggCGCUGU GUUC UUUGA CACUA Uac gg   a
uug gu    ----           C    A     -     -   a  gac 

>cel-mir-44 (-42.10)   [cel-miR-44:61-81]

--     aau      u         -   gu        --   --g  a 
  gagaa   ggccaa cuggaugug cuc  uggucaua  gac   uc a
  |||||   |||||| ||||||||| |||  ||||||||  |||   || c
  cucuu   ccgguU GACUUACAC GAG  AUCAGUau  uug   ag a
au     cgu      C         A   --        ac   uca  c 

>cel-mir-45 (-41.00)   [cel-miR-45:61-81]

---caccau      c          -   gu        aua    ccac 
         gugcca gcuggaugug cuc  uagucaua   uccu    a
         |||||| |||||||||| |||  ||||||||   ||||     
         cgcggu CGACUUACAC GAG  AUCAGUau   agga    a
uacguaagc      U          A   --        --c    acga 

>cel-mir-46 (-39.00)   [cel-miR-46*:15-35] [cel-miR-46:61-82]

---cuga  ugaag           -CG     U      --u   -   c 
       gg     cugAAGAGAGC   UCUAU GACAGu   caa gac a
       ||     |||||||||||   ||||| ||||||   ||| ||| c
       cc     gACUUCUCUCG   AGGUA CUGUcg   guu cug g
uaacugg  uagua           CUG     -      ugu   g   a 

>cel-mir-47 (-42.50)   [cel-miR-47*:19-40] [cel-miR-47:61-82]

gaga   -   ugaaa           A    -AU       --c    ac 
    gcc gac     cugAAGAGAGC GUCU   UGACAGU   gguu  u
    ||| |||     ||||||||||| ||||   |||||||   ||||   
    cgg cug     gACUUCUCUCG CGGA   ACUGUca   cuaa  c
--cc   u   uagua           -    GGU       uuu    ag 

>cel-mir-48 (-34.50)   [cel-miR-48:16-38] [cel-miR-48*:54-75]

-----------      cc     cu    G      CA  A    C  au  a 
           aaacuc  gggaa  UGAG UAGGCU  GU GAUG GA  ug a
           ||||||  |||||  |||| ||||||  || |||| ||  || c
           uuugag  cccuu  GCUC AUCCGA  CA CUAC cu  au g
uuguuauggca      -a     AC    G      -C  C    A  cu  g 

>cel-mir-49 (-38.50)   [cel-miR-49:61-82]

uuuugaaaaa    a     c       g     au     c  ag aau 
          gacc ccguc gcaguuu uugug  gugcu ca  c   c
          |||| ||||| ||||||| |||||  ||||| ||  |    
          uugg gguAG CGUCGAA AGCAC  CACGA gu  g   a
---uuuaguc    a     A       G     --     A  cu agu 

>cel-mir-50 (-59.60)   [cel-miR-50:16-37]

------      -        c               UCU       g   uu 
      cugccc gccggccg UGAUAUGUCUGGUAU   UGGGuuu aac  c
      |||||| |||||||| |||||||||||||||   ||||||| |||  c
      gacggg cggccggc gcuaugcagauuaua   gcccaag uug  a
guaaug      g        a               --c       -   cg 

>cel-mir-51 (-33.30)   [cel-miR-51:17-39] [cel-miR-51*:57-78]

-------- -   gaaaa u    c    C   G  C  A       -    ggu 
        g ucc     g ccgu UACC GUA CU CU UCCAUGU Uacu   c
        | |||     | |||| |||| ||| || || ||||||| ||||    
        c ggg     c ggcA GUGG CAU GA GA AGGUACa guga   a
ucgaagua u   augag -    C    A   G  C  -       a    aaa 

>cel-mir-52 (-25.70)   [cel-miR-52:17-40]

----       - --    a u C    GUA   A   UUC    C    - ag 
    uccaacu c  uaac g c ACCC   CAU UGU   CGUG Uuga c  c
    ||||||| |  |||| | | ||||   ||| |||   |||| |||| |   
    ggguuga g  auug c g uggg   gua aca   gcac aacu g  g
uucu       a uu    g c a    aaa   -   -uu    u    c aa 

>cel-mir-53 (-32.20)   [cel-miR-53:16-39]

-----      - --    a u C       CAU    UU     C    -  u 
     ccgauu c  ugac g c ACCCGUA   UUGU  CCGUG Uuga cu c
     |||||| |  |||| | | |||||||   ||||  ||||| |||| ||  
     ggcuga g  acug c g uggguau   aaca  ggcac aacu ga a
uuuaa      u uu    a c c       -au    -c     u    c  a 

>cel-mir-54 (-35.30)   [cel-miR-54:61-84]

  g   cgc         a    -    -  cg   a a   uug    u 
gu agu   gcucugacu ggau auga ga  acg g aca   cuuu u
|| |||   ||||||||| |||| |||| ||  ||| | |||   ||||  
ca ucg   cgggacuGA CCUA UACU CU  UGC C Ugu   gaaa u
  g   -au         G    A    U  AA   C A   uca    a 

>cel-mir-55 (-35.30)   [cel-miR-55:61-83]

agauuu    cu   u   a            c   -   u    - uuuu 
      ggaa  uaa ggg cucggcagaaac uau cgg uaua c    u
      ||||  ||| ||| |||||||||||| ||| ||| |||| |    g
      ccuu  auu ccc GAGUCGUCUUUG AUA GCC AUau g    g
--uugu    --   c   -            A   U   C    c uaua 

>cel-mir-56 (-42.00)   [cel-miR-56*:18-40] [cel-miR-56:61-82]

-ga  -  gu   u     UG     UC    U     UGU   -   ucc 
   gc ca  guc guucu  GCGGA  CAUU UGGGU   Acc uca   u
   || ||  ||| |||||  |||||  |||| |||||   ||| |||   a
   cg gu  cag caaGA  CGCCU  GUAA GCCCA   Ugg agu   a
cca  u  --   c     GU     UU    U     ---   c   uua 

>cel-mir-57 (-32.50)   [cel-miR-57:16-39]

----------a   aca  c    c    C     A  G    G     u   a 
           ucg   ug ucgu UACC UGUAG UC AGCU UGUGU uga a
           |||   || |||| |||| ||||| || |||| ||||| ||| c
           agc   ac agca gugg acauc ag ucga gcaca acu a
aaguauuuaga   caa  a    c    a     -  a    -     u   a 

>cel-mir-58 (-36.80)   [cel-miR-58*:16-36] [cel-miR-58:61-82]

------     ucaua         C    CUU  C        a  -uc  c 
      gcucg     uccauUGCC UACU   CG AUCUCAuc cu   gu c
      |||||     ||||||||| ||||   || |||||||| ||   || a
      cgagu     aggUAACGG AUGA   GC UAGAGUag ga   ca a
ugagau     ----c         C    CUU  -        g  uac  u 

>cel-mir-59 (-35.71)   [cel-miR-59*:20-41] [cel-miR-59:63-85]

       cuagau  g            -      AA     caaaagu    g 
aguugau      au acaUCGUCCUGA AAACGA  CGGAA       ucaa a
|||||||      || |||||||||||| ||||||  |||||       ||||  
ucaacua      ua uGUAGUAGGACU UUUGCU  GCUuu       aguu u
       --aaau  g            A      AA     -------    a 

>cel-mir-60 (-35.00)   [cel-miR-60*:22-43] [cel-miR-60:61-83]

cucgaaaaccgcuugu               -    C    A      aca 
                ucuugAACUGGAAGA GUGC AUAA AUcaug   a
                ||||||||||||||| |||| |||| ||||||    
                agaACUUGAUCUUUU CACG UAUU Uagugc   a
----gcuaaagaguuc               A    -    A      aug 

>cel-mir-61 (-50.50)   [cel-miR-61*:25-44] [cel-miR-61:61-81]

uuccauu         -             U    GG  U    C  -  uc 
       aucgcugaa ccucgagaUGGGU ACGG  CU AGUC uu cc  c
       ||||||||| ||||||||||||| ||||  || |||| || ||  g
       uaguggcuu ggagcuCUACUCA UGCC  GA UCAG aa gg  u
-------         u             U    AA  -    U  c  ua 

>cel-mir-62 (-25.10)   [cel-miR-62:37-58]

--           cu      -c     c 
  gugaguuagau  cauauc  uuccg a
  |||||||||||  ||||||  ||||| a
  CAUUCGAUCUA  GUAUAG  aaggu a
GA           AU      Ua     a 

>cel-mir-63 (-38.00)   [cel-miR-63*:20-38] [cel-miR-63:61-84]

-ucaa    c   --   a             --    A     --c     agc 
     caag aga  cac auuUCUAACUCGU  CGGU GUCAu   guucu   u
     |||| |||  ||| |||||||||||||  |||| |||||   |||||    
     guuc ucu  gug uAAAGGUUGAGCG  GUCA CAGUA   cagga   g
aacga    a   ug   a             AA    -     Uca     aaa 

>cel-mir-64 (-38.50)   [cel-miR-64:22-44] [cel-miR-64*:68-88]

-cucccc    a -  c     a    A      AG   --       -   uuuuc 
       gcug c cu gccga UAUG CACUGA  CGU  UACCGAA ccg     c
       |||| | || ||||| |||| ||||||  |||  ||||||| |||      
       ugac g ga cggcu GUAC GUGACU  GCA  GUGgcuu ggu     c
uaugaau    c c  u     C    G      -A   AC       a   ccaca 

>cel-mir-65 (-43.80)   [cel-miR-65:18-40] [cel-miR-65*:58-78]

----        --uu      u    A     AA     A C   cac  u 
    auggagcc    cgccga UAUG CACUG  GCGUA C GAA   ca a
    ||||||||    |||||| |||| |||||  ||||| | |||   || u
    uaccucgg    gcggcu GUAC GUGAC  CGCAU G Cuu   gu u
aaau        uugc      C    C     -G     C U   aga  u 

>cel-mir-66 (-37.49)   [cel-miR-66:17-39]

------     aaa       aCA        A        G    gaauguu 
      ccaca   augccau   UGACACUG UUAGGGAU UGAu       a
      |||||   |||||||   |||||||| |||||||| ||||        
      ggugu   ugcggua   acuguggc aauccuua acua       a
gauguu     --a       caa        -        a    gcccuag 

>cel-mir-67 (-32.20)   [cel-miR-67:61-84]

gaucaaagauuc       cg   a     -cc      u     auuau 
            gucgauc  cuc uucug   gguugu augcu     c
            |||||||  ||| |||||   |||||| |||||      
            uagcuAG  GAG AAGAU   CCAACA Uacga     a
--uucaaaauuu       AU   A     CCU      C     auuag 

>cel-mir-70 (-32.30)   [cel-miR-70:62-84]

ucaaaaua       ga       c         u     a  a   c  au 
        aaacgau  aaacuau gaaauacua cgacg au aca uu  g
        |||||||  ||||||| ||||||||| ||||| || ||| ||   
        uuuguua  uuugaUA CUUUGUGGU GCUGC UA Ugu aa  a
------ua       ag       C         U     A  A   a  ga 

>cel-mir-71 (-36.30)   [cel-miR-71:16-34] [cel-miR-71*:53-73]

------   -  c   ga   a         U         g   u   a 
      guc ug ucu  acg UGAAAGACA GGGUAGUGA acg cgg g
      ||| || |||  ||| ||||||||| ||||||||| ||| |||  
      cag gc agg  ugc GCUUUUUGU CUUAUCACU Ugc gcu c
aagguc   u  u   gc   C         -         A   u   c 

>cel-mir-72 (-43.21)   [cel-miR-72:17-39]

      ---      a  uA    AG    U   AU      augaucgc 
aggucc   cgucag gc  GGCA  AUGU GGC  AGCUGA        u
||||||   |||||| ||  ||||  |||| |||  ||||||        a
uccagg   guaguc cg  ccgu  uaca ccg  ucgacu        u
      agu      a  ca    cu    -   cu      aucaacaa 

>cel-mir-73 (-35.52)   [cel-miR-73:62-84]

cagugagag   ---c  a            u  -     ga    ca  uauca 
         ucc    ac cacgacuggacu cc auauc  gcca  gc     a
         |||    || |||||||||||| || |||||  ||||  ||     c
         agg    ug guguUGACUUGA GG UGUAG  CGGU  cg     g
--------g   uauu  c            C  A     AA    --  uuuaa 

>cel-mir-74 (-38.60)   [cel-miR-74:61-82]

aaa     ca        uc     u    c    uc        cauc 
   ugguu  aaaaacgu  gggcu ccau ucuu  ccagccua    u
   |||||  ||||||||  ||||| |||| ||||  ||||||||     
   accaa  uuuuugcA  UCUGA GGUA AGAA  GGUcgggu    c
-aa     -c        CA     C    A    -C        ccaa 

>cel-mir-75 (-33.60)   [cel-miR-75*:23-42] [cel-miR-75:61-82]

uucuugu      -ga   a   C         CA     A    -   au 
       ugcuuu   aga uug AGUCGGUUG  AGCUU AAua caa  c
       ||||||   ||| ||| |||||||||  ||||| |||| |||  c
       acgaga   ucu aAC UCGGCCAAC  UCGAA UUau guu  g
------g      aag   g   U         CA     A    u   aa 

>cel-mir-76 (-41.30)   [cel-miR-76:61-82]

-a    -a         u        -      u      -  uu     u 
  uuuc  gcuccuguc gggcuuca caauag cgaaua cc  aaauu c
  ||||  ||||||||| |||||||| |||||| |||||| ||  |||||  
  aaag  uggggguAG UCCGAAGU GUUGUU GCUUau gg  uuuaa a
ag    ag         U        A      -      a  --     a 

>cel-mir-77 (-35.40)   [cel-miR-77:62-83]

gcaucugc     - ---   c               cu    g     ac   c 
        caaac c   gcc guuuggaugguugug  cuga gaaau  gca a
        ||||| |   ||| |||||||||||||||  |||| |||||  ||| g
        guuug g   ugg uaaACCUGUCGAUAC  GACU CUUua  ugu a
--------     a aua   u               CG    A     -c   a 

>cel-mir-78 (-15.00)   [cel-miR-78:61-81]

aauaaaauauauug    au  ug -  -   -          -a   auuuu  a 
              uuuc  ag  u cc gua aaauaacuag  uuu     gu a
              ||||  ||  | || ||| ||||||||||  |||     ||  
              agag  uu  a gg CGU UUUGUUGGUC  GAG     ca a
--------------    cu  gu a  u   G          CG   GUuau  a 

>cel-mir-79 (-36.00)   [cel-miR-79:61-82]

ua     -  -uu u    u          uc     ca    --uu   u 
  guaga ca   c ccga cuuuggugau  agcuu  auga    ggc a
  ||||| ||   | |||| ||||||||||  |||||  ||||    ||| c
  caucu gu   g ggcU GAAACCAUUG  UCGAA  UAcu    uug a
--     a  ucu c    C          GA     -A    uucu   g 

>cel-mir-80 (-30.50)   [cel-miR-227:19-40] [cel-miR-80:61-83]

auggaca   -gu   c  A         --     U  G      ----c g 
       cuc   ucg uc GCUUUCGAC  AUGAU CU AACaau     c c
       |||   ||| || |||||||||  ||||| || ||||||     |  
       gag   agu AG CGAAAGUUG  UACUA GA Uuguug     g a
--cuaua   acu   a  C         AU     -  G      uaccc a 

>cel-mir-81 (-43.60)   [cel-miR-81*:25-46] [cel-miR-81:67-88]

aucagu   au    -c       uC         C       G   ---   auc 
      gcc  cgug  ccaacag  GGUUUUCAC GUGAUCU AGA   gca   c
      |||  ||||  |||||||  ||||||||| ||||||| |||   |||   a
      cgg  gcau  gguuguU  UCGAAAGUG UACUAGA Ucu   cgu   a
-guuuu   --    cu       GA         C       G   uuu   aaa 

>cel-mir-82 (-35.30)   [cel-miR-82:61-82]

gaaaua     -uuuu      c       u u       a    a   ca 
      gguuc     agcaac gguuuuc c gugaucu caga uga  g
      |||||     |||||| ||||||| | ||||||| |||| |||  c
      ucaag     uuguUG CCGAAAG G UACUAGA GUcu gcu  u
-----c     uauuu      A       U C       -    -   aa 

>cel-mir-83 (-28.50)   [cel-miR-83:61-82]

   a - -  u     cc              u  a  u  -  --  caa 
agc c c ac cggaa  acugaauuuaugug gu cu ga cg  gc   c
||| | | || |||||  |||||||||||||| || || || ||  ||    
ucg g g ug gcuuu  UGACUUAAAUAUAC CA GA cu gc  cg   a
   a a c  c     AA              -  C  U  a  ua  aga 

>cel-mir-84 (-23.00)   [cel-miR-84:9-30] [cel-miR-84*:47-69]

gu    u     G    A  U        A   uguc 
  ggca cUGAG UAGU UG AAUAUUGU gac    u
  |||| ||||| |||| || |||||||| |||     
  uugu GGCUC AUCA AC UUGUAACA cug    a
uc    C     A    -  U        C   uaau 

>cel-mir-85 (-40.10)   [cel-miR-85:65-88]

uau       uggcg       c           -  g    a     ---   u 
   agaauuu     ucggagc cgauuuuucaa ua uuug aacca   gug a
   |||||||     ||||||| ||||||||||| || |||| |||||   |||  
   ucuuaag     agucuCG GCUGAAAAGUU AU AAAC Uuggu   uac c
-au       -uaaa       U           U  G    A     aaa   a 

>cel-mir-86 (-42.60)   [cel-miR-86:16-38]

---      -c  g   -           G  UU   A   U     a gu 
   cguguc  ac ccg ucUAAGUGAAU CU  GCC CAG Cuucg u  u
   ||||||  || ||| ||||||||||| ||  ||| ||| ||||| |  c
   gcacag  ug ggc ggauucgcuua ga  cgg guc gaagu a  u
acg      uu  a   c           -  cu   -   c     a ag 

>cel-mir-87 (-44.60)   [cel-miR-87:61-82]

-   u   cca      -       u     c u    a   -  -   uc 
 ggu gug   uccggc cgccuga acuuu g cuca ccu cg cug  a
 ||| |||   |||||| ||||||| ||||| | |||| ||| || |||   
 cca cac   aggcCG GUGGACU UGAAA C GAGU Gga gc ggu  g
c   -   --a      U       U     - -    -   u  u   ua 

>cel-mir-90 (-43.20)   [cel-miR-90:62-84]

g    -   u      c   u     -    g        -  a   cuc 
 ggcg cca uucgag ggc uucaa cgac auaucaac cg caa   a
 |||| ||| |||||| ||| ||||| |||| |||||||| || |||   c
 ccgu ggu aaguUC CCG AAGUU GUUG UAUAGUug gc guu   a
a    a   u      C   U     U    -        u  -   uuc 

>hsa-let-7a-1 (-35.60)   [hsa-let-7a:6-27] [hsa-let-7a*:57-77]

     U   GU                uuagggucacac 
uggga GAG  AGUAGGUUGUAUAGUU            c
||||| |||  ||||||||||||||||            c
aucCU UUC  UCAUCUAACAUAUCaa            a
     -   UG                uagagggucacc 

>hsa-let-7a-2 (-25.20)   [hsa-let-7a:5-26] [hsa-let-7a-2*:50-71]

   uU   G   U             uagaa ua a 
agg  GAG UAG AGGUUGUAUAGUU     u  c u
|||  ||| ||| |||||||||||||     |  | c
uCC  UUC AUC UCCGACAUGUCaa     a  g a
   -U   G   C             --uag gg a 

>hsa-let-7a-3 (-34.40)   [hsa-let-7a:4-25] [hsa-let-7a*:52-72]

   U   GU                ---------        
ggg GAG  AGUAGGUUGUAUAGUU         uggggcu 
||| |||  ||||||||||||||||         |||||| c
ucC UUC  UCAUCUAACAUAUCaa         gucccgu 
   U   UG                uaggguauc        

>hsa-let-7b (-50.60)   [hsa-let-7b:6-27] [hsa-let-7b*:60-81]

     U                     ucagggcagugaug 
cgggg GAGGUAGUAGGUUGUGUGGUU              u
||||| |||||||||||||||||||||               
guCCC UUCCGUCAUCCAACAUAUCaa              u
     -                     uagaaggcuccccg 

>hsa-let-7c (-33.50)   [hsa-let-7c:11-32] [hsa-let-7c*:33-54]

  a      uU   G   U             UA  G UA A 
gc uccggg  GAG UAG AGGUUGUAUGGUU  GA U  C C
|| ||||||  ||| ||| |||||||||||||  || |  | C
cg agguuc  uuc auc uccaacaugucaA  UU A  G C
  -      cu   g   u             --  G GG U 

>hsa-let-7d (-42.60)   [hsa-let-7d:8-29] [hsa-let-7d*:62-83]

       A              C      uuagggcagggauu 
ccuagga GAGGUAGUAGGUUG AUAGUU              u
||||||| |||||||||||||| ||||||               
ggauUCU UUCCGUCGUCCAGC UAUCaa              u
       -              A      uggaggaacacccg 

>hsa-let-7e (-37.80)   [hsa-let-7e:8-29] [hsa-let-7e*:53-74]

  c   cU   G                U  ----gga  a 
cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg c
|| |||  ||| |||||||||||||||| ||       ||  
gg ccC  UUC AUCCUCCGGCAUAUCa cu       cc a
  a   CU   G                -  agaggaa  c 

>hsa-let-7f-1 (-43.30)   [hsa-let-7f:7-28] [hsa-let-7f-1*:63-84]

    a UG                      ---------       u 
ucag g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| |  ||||||||||||||||||||||         ||||||| a
aguC C  UCCGUUAUCUAACAUAUCaaua         ucccauu u
    - CU                      gaggacuug       u 

>hsa-let-7f-2 (-40.70)   [hsa-let-7f:8-29] [hsa-let-7f-2*:58-79]

u      U   GU                uuagggucauac 
 guggga GAG  AGUAGAUUGUAUAGUU            c
 |||||| |||  ||||||||||||||||             
 cacCCU UUC  UCAUCUGACAUAUCaa            c
g      -   UG                uagagguucuac 

>hsa-mir-15a (-30.74)   [hsa-miR-15a:14-35] [hsa-miR-15a*:51-72]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       C  CGUCGUGU  UACCGGACgu  aa a
     auaaaaA UC        UA          gg  a 

>hsa-mir-16-1 (-37.70)   [hsa-miR-16:14-35] [hsa-miR-16-1*:56-77]

      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug AGUCGUCGUG CA UUAUGACC c auu    u
      ga   a          U  A        u u   aaaa 

>hsa-mir-17 (-34.30)   [hsa-miR-17:14-36] [hsa-miR-17*:51-72]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacG   UUCACGGA GU ACGUC Auc ac  g
    gg       AUG        A  G     -   u  gu 

>hsa-mir-18a (-22.00)   [hsa-miR-18a:6-28] [hsa-miR-18a*:47-69]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAG ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cGG  UUCC CGU  AUC CGUC Auc ac  u a
a   UC    U   GA   C    -   u  ga u 

>hsa-mir-19a (-39.10)   [hsa-miR-19a*:14-35] [hsa-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuAGUUUUGCAUAG  UUGCAC   UACA  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>hsa-mir-19b-1 (-38.42)   [hsa-miR-19b-1*:16-38] [hsa-miR-19b:54-76]

     uu                 -  -      UC    ugugu 
cacug  cuaugguuAGUUUUGCA GG UUUGCA  CAGC     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>hsa-mir-19b-2 (-40.60)   [hsa-miR-19b-2*:19-40] [hsa-miR-19b:62-84]

      cuac                 -  -       UUCA       u 
acauug    uuacaauuAGUUUUGCA GG UUUGCAU    gcguaua a
||||||    ||||||||||||||||| || |||||||    |||||||  
uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
      ----                 A  U       Ucgg       g 

>hsa-mir-20a (-31.00)   [hsa-miR-20a:8-30] [hsa-miR-20a*:44-65]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAG ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uGA  UUCACGAGUAUUACGUC Auc au  a
    a   AA                 -   u  ug 

>hsa-mir-21 (-35.80)   [hsa-miR-21:8-29] [hsa-miR-21*:46-66]

u     gU        A     A     A    u a 
 gucgg  AGCUUAUC GACUG UGUUG cugu g a
 |||||  |||||||| ||||| ||||| |||| | u
 caguc  UCGGGUAG CUGAC ACAAC ggua c c
a     UG        -     C     -    - u 

>hsa-mir-22 (-39.80)   [hsa-miR-22*:15-36] [hsa-miR-22:53-74]

   u   cc               -     A      u  ccu 
ggc gag  gcaguAGUUCUUCAG UGGCA GCUUUA gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

>hsa-mir-23a (-33.20)   [hsa-miR-23a*:9-30] [hsa-miR-23a:45-65]

  c   c     -       G    G      cuuc 
gg cgg uGGGG UUCCUGG GAUG GAUUUg    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 

>hsa-mir-24-1 (-26.32)   [hsa-miR-24-1*:7-28] [hsa-miR-24:44-65]

    g  G   A         UA     ucuca 
cucc gU CCU CUGAGCUGA  UCAGU     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacau 

>hsa-mir-24-2 (-27.30)   [hsa-miR-24-2*:13-34] [hsa-miR-24:50-71]

     cc   cg   -CU         --AA      u 
cucug  ucc  UGC   ACUGAGCUG    ACACAG u
|||||  |||  |||   |||||||||    |||||| g
ggGAC  AGG  ACG   UGACUCGGU    uguguu g
     -A   --   ACU         caca      u 

>hsa-mir-25 (-37.80)   [hsa-miR-25*:14-34] [hsa-miR-25:52-73]

    a ug   ag    G     UU G     U   --  ac 
ggcc g  uug  AGGC GAGAC  G GCAAU Gcu  gg  g
|||| |  |||  |||| |||||  | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg  cc  u
    c gu   AG    G     UU A     -   gu  cg 

>hsa-mir-26a-1 (-37.30)   [hsa-miR-26a:10-31] [hsa-miR-26a-1*:49-70]

   g      U         C          --g  ca 
gug ccucgU CAAGUAAUC AGGAUAGGCU   ug  g
||| |||||| ||||||||| ||||||||||   ||  g
cgc gggGCA GUUCAUUGG UCUUAUCCgg   ac  u
   a      C         U          gua  cc 

>hsa-mir-26b (-40.10)   [hsa-miR-26b:12-32] [hsa-miR-26b*:47-68]

    ga   -   U        UC           u ug 
ccgg  ccc agU CAAGUAAU  AGGAUAGGUug g  c
||||  ||| ||| ||||||||  ||||||||||| |   
ggcc  ggg UCG GUUCAUUA  UCUUGUCCgac c  u
    ag   C   -        CC           - ug 

>hsa-mir-27a (-37.50)   [hsa-miR-27a*:10-31] [hsa-miR-27a:51-71]

   a  a  A         UG  U       g  u cac 
cug gg gc GGGCUUAGC  CU GUGAGCA gg c   a
||| || || |||||||||  || ||||||| || |    
gac cc CG CUUGAAUCG  GA CACUUgu cu g   c
   c  c  C         GU  -       g  - aac 

>hsa-mir-28 (-50.60)   [hsa-miR-28-5p:14-35] [hsa-miR-28-3p:54-75]

   c         A                U  ----     cc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuua  u
||| ||||||||| |||||||||||||||| ||    |||||   
uca ggacgggAG UCCUCGAGUGUUAGAU AC    ucagu  u
   c         G                C  ccuu     cu 

>hsa-mir-29a (-24.90)   [hsa-miR-29a*:4-25] [hsa-miR-29a:42-63]

            UUU       C    ucaa 
augACUGAUUUC   UGGUGUU AGag    u
||||||||||||   ||||||| ||||    a
uAUUGGCUAAAG   ACCACGA Ucuu    u
            UCU       -    uuaa 

>hsa-mir-30a (-37.30)   [hsa-miR-30a:6-27] [hsa-miR-30a*:47-68]

   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaga   c 

>hsa-mir-31 (-36.00)   [hsa-miR-31:8-28] [hsa-miR-31*:44-65]

      gA     G   C         -U   gaa 
ggagag  GGCAA AUG UGGCAUAGC  guu   c
||||||  ||||| ||| |||||||||  |||    
ccuuuc  CCGUU UAC ACCGUAUCG  caa   u
      UA     A   A         Uc   ggg 

>hsa-mir-32 (-31.90)   [hsa-miR-32:6-27] [hsa-miR-32*:47-68]

        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCAu g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuUUUAUA  GUGUG UGAUUUAACgua c  cg c
        GU     -            a uc  g 

>hsa-mir-33a (-37.30)   [hsa-miR-33a:6-26] [hsa-miR-33a*:46-67]

              A UU          uucu  u 
cugugGUGCAUUGU G  GCAUUGCAug    gg g
|||||||||||||| |  ||||||||||    || g
gaCACUACGUGACA C  UGUAACguac    cc u
              C UU          ----  a 

>hsa-mir-92a-1 (-36.20)   [hsa-miR-92a-1*:11-33] [hsa-miR-92a:48-69]

---cu   uac            C   U           uu 
     uuc   acAGGUUGGGAU GGU GCAAUGCUgug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 

>hsa-mir-92a-2 (-30.20)   [hsa-miR-92a-2*:9-30] [hsa-miR-92a:48-69]

  a   c     G     UU  U   U     -      
uc ucc uGGGU GGGAU  GU GCA UACuu guguu 
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uauau 
  a   U     G     UU  -   U     a      

>hsa-mir-93 (-44.80)   [hsa-miR-93:11-33] [hsa-miR-93*:50-71]

          -CA       -     U    G   ug  au 
cugggggcuc   AAGUGCU GUUCG GCAG UAG  ug  u
||||||||||   ||||||| ||||| |||| |||  ||   
ggcccccgaG   UUCACGA CGAGU CGUC Auc  ac  a
          CCC       U     -    -   ca  cc 

>hsa-mir-95 (-37.50)   [hsa-miR-95:49-70]

a   c      ca          gu         -   aa 
 aca aguggg  cucaauaaau  cuguugaau uga  u
 ||| ||||||  ||||||||||  ||||||||| |||   
 ugu ucaccc  GAGUUAUUUA  GGCAACUUa auu  g
g   c      AC          UG         c   gc 

>hsa-mir-96 (-34.40)   [hsa-miR-96:9-31] [hsa-miR-96*:52-73]

ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCUu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg UA AACCGUGA CGUGUA  AAcgag   cgc  c
aaa  G  U        -      CU      ucu   cu 

>hsa-mir-98 (-57.00)   [hsa-miR-98:22-43]

a    uc    -          U                 U    ---------      aggg 
 ggau  ugcu caugccaggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||||  |||| |||||||||| ||||||||||||||||| ||||         ||||||    u
 cuua  acgg gugugguccc uuucaucauucaacaua caau         accccg    a
a    -u    u          -                 u    agaagauua      gauu 

>hsa-mir-99a (-39.60)   [hsa-miR-99a:13-34] [hsa-miR-99a*:50-71]

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacuguGU UGGGUAUCU  GCU GAACac gc   g
gu          C         UC   C      -  cag 

>hsa-mir-100 (-26.80)   [hsa-miR-100:13-34] [hsa-miR-100*:48-69]

    -uu c    A   CG     C   A      - uau 
ccug   g caca ACC  UAGAU CGA CUUGUG g   u
||||   | |||| |||  ||||| ||| |||||| |    
ggau   c guGU UGG  AUCUA GUU GAACac c   a
    ugu u    A   AU     U   C      g cug 

>hsa-mir-101-1 (-36.20)   [hsa-miR-101*:11-32] [hsa-miR-101:47-67]

u   cuggc                  A    gucua 
 gcc     uCAGUUAUCACAGUGCUG UGCU     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uaggA                  -    aaauc 

>hsa-mir-29b-1 (-34.02)   [hsa-miR-29b-1*:10-33] [hsa-miR-29b:51-73]

-         -          U      GU      uuaaa 
 cuucaggaa GCUGGUUUCA AUGGUG  UUAGAu     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucUU UGACUAAAGU UACCAC  GAUcug     g
g         G          U      --      uuagu 

>hsa-mir-29b-2 (-31.24)   [hsa-miR-29b-2*:11-32] [hsa-miR-29b:52-74]

         -          C      G  U    uuuucc 
cuucuggaa gCUGGUUUCA AUGGUG CU AGau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuUU UGACUAAAGU UACCAC GA Ucua      u
         G          U      -  -    uguuuc 

>hsa-mir-103-2 (-28.10)   [hsa-miR-103-2*:11-33] [hsa-miR-103:48-70]

uu  g      --   U  U           ----    ua 
  gu cuuucA  GCU CU UACAGUGCUGC    CUUG  g
  || ||||||  ||| || |||||||||||    ||||  c
  ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
ac  a      AU   -  C           Aacu    uu 

>hsa-mir-103-1 (-30.90)   [hsa-miR-103:48-70]

uac    c  --    u  u           c   u g a 
   ugcc uc  ggcu cu uacagugcugc uug u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 

>hsa-mir-105-1 (-43.10)   [hsa-miR-105:13-35] [hsa-miR-105*:51-72]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUGGUg c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcAUC GU UACGAGUUUG  GGCAccac g  c
auc         -  G          UA        - ua 

>hsa-mir-105-2 (-41.30)   [hsa-miR-105:13-35] [hsa-miR-105*:51-72]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUGGUg c  c
   ||||||||| || ||||||||||  |||||||| |  u
   ugugguAUC GU UACGAGUUUG  GGCAccac g  u
auc         -  G          UA        - ua 

>hsa-mir-106a (-34.70)   [hsa-miR-106a:13-35] [hsa-miR-106a*:50-71]

  u   cc      -           G     G   c  u 
cc ugg  auguAA AAGUGCUUACA UGCAG UAG uu u
|| |||  |||||| ||||||||||| ||||| ||| || u
gg acc  uaCAUU UUCACGAAUGU ACGUC auc ag g
  u   au      C           A     -   u  a 

>hsa-mir-107 (-29.60)   [hsa-miR-107:50-72]

c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

>hsa-mir-16-2 (-30.80)   [hsa-miR-16:10-31] [hsa-miR-16-2*:53-74]

  uc    cU         UA        C  ag   aau 
gu  cacu  AGCAGCACG  AAUAUUGG Gu  uga   a
||  ||||  |||||||||  |||||||| ||  |||    
ca  gugA  UCGUCGUGU  UUAUAACC ca  auu   u
  gu    UU         CA        a  -a   aua 

>dme-mir-1 (-36.20)   [dme-miR-1:56-77]

uuca   uuu  --ga            c        a   -   au 
    gcc   ga    guuccaugcuuc uugcauuc aua guu  a
    |||   ||    |||||||||||| |||||||| ||| |||  u
    cgg   cu    cGAGGUAUGAAG AAUGUAAG Uau cga  u
-gag   --u  aaag            A        G   a   ac 

>dme-mir-2a-1 (-41.90)   [dme-miR-2a:49-71]

         -      -         a    auuuc   u 
gcugggcuc ucaaag ugguuguga augc     cgc u
||||||||| |||||| ||||||||| ||||     ||| u
cgauuCGAG AGUUUC ACCGACACU Uacg     gcg g
         U      G         A    -----   c 

>dme-mir-2a-2 (-32.90)   [dme-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g aac 

>dme-mir-2b-1 (-27.90)   [dme-miR-2b:48-70]

  u    ug         -    a    ----c      u 
cu caac  ucuucaaag uggc guga     auguug c
|| ||||  ||||||||| |||| ||||     ||||||  
gg guug  AGGAGUUUC ACCG CACU     uauaac a
  c    CG         G    A    AUacu      a 

>dme-mir-2b-2 (-36.90)   [dme-miR-2b:54-76]

       a          -         a   --uuu  cuu 
uuguguc uucuucaaag ugguuguga aug     gc   u
||||||| |||||||||| ||||||||| |||     ||    
agcgcag GAGGAGUUUC ACCGACACU Uac     cg   u
       C          G         A   uuauc  uau 

>dme-mir-3 (-28.70)   [dme-miR-3:43-64]

    c         uc    g    u    uuc 
gauc ugggaugca  uugu cagu augu   a
|||| |||||||||  |||| |||| ||||   a
cuag ACUCUGUGU  AACG GUCA Uaca   u
    a         GA    G    C    cuc 

>dme-mir-4 (-24.30)   [dme-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag      u 
u  caau a  uuc  uggu guc agc     gugauu u
|  |||| |  |||  |||| ||| |||     |||||| u
g  guug u  aAG  ACCA CAG UCG     UAcugg c
 gu    c ug   UU    A   A   --AAA      c 

>dme-mir-5 (-22.02)   [dme-miR-5:5-27]

---gcua       C               aguug 
       AAAGGAA GAUCGUUGUGAUAUG     u
       ||||||| |||||||||||||||     u
       uuuccuu uuagugacacuauac     u
cgcaaua       -               aaucc 

>dme-mir-6-1 (-25.70)   [dme-miR-6:52-73]

-uuuaaug             ug     c    ag uaau 
        uagagggaauagu  cugug ugua  u    a
        |||||||||||||  ||||| ||||  |    u
        gUUUUUCUUGUCG  GACAC AUau  a    a
aaauccau             GU     U    cu uacc 

>dme-mir-6-2 (-26.50)   [dme-miR-6:48-69]

     c        uu ug   c       u  -  g 
uaacc aagggaac  c  cug ugauaua ua uu a
||||| ||||||||  |  ||| ||||||| || ||  
guugg UUUUCUUG  G  GAC ACUAUau au aa a
     U        UC GU   -       c  c  a 

>dme-mir-6-3 (-32.10)   [dme-miR-6:53-74]

    a             ug   a        u   aaa 
caaa agaagggaacggu  cug ugauguag uug   c
|||| |||||||||||||  ||| |||||||| |||   u
guuu uUUUUUCUUGUCG  GAC ACUAUauu aac   c
    g             GU   -        u   acu 

>dme-mir-7 (-33.90)   [dme-miR-7:15-37]

        u     U       U  U     U      uggu u 
gagugcau ccgua GGAAGAC AG GAUUU GUUGUu    c u
|||||||| ||||| ||||||| || ||||| ||||||    |  
uuuacgug ggcau ucuucug uc cuaaa uaacaa    g u
        c     -       u  c     -      uaau g 

>dme-mir-8 (-31.42)   [dme-miR-8:53-75]

        cu uu -       -   g     c      uccuu 
aaggacau  g  c acaucuu acc ggcag auuaga     u
||||||||  |  | ||||||| ||| ||||| ||||||     u
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu     u
        -- cu C       A   A     A      caaua 

>dme-mir-9a (-29.00)   [dme-miR-9a:10-32]

    -     U       UAU      G     -  gau 
gcua uguug CUUUGGU   CUAGCU UAUGA gu   a
|||| ||||| |||||||   |||||| ||||| ||    
cgau auaau gaagcca   gaucga auacu ca   a
    u     u       uuc      a     g  aua 

>dme-mir-10 (-31.00)   [dme-miR-10-5p:9-30] [dme-miR-10-3p:49-71]

     ucu   -  G    U             auacu 
ccacg   ACC CU UAGA CCGAAUUUGUUuu     a
|||||   ||| || |||| |||||||||||||      
ggugu   UGG GA AUCU GGCUUAAACagga     g
     gUU   A  G    U             auuuc 

>dme-mir-11 (-32.60)   [dme-miR-11:48-68]

       u         ucu      ccc   u  acu 
gcacuug caagaacuu   cuguga   gcg gu   u
||||||| |||||||||   ||||||   ||| ||    
cgugagu GUUCUUGAG   GACACU   Cgc cg   a
       C         UCU      --A   -  aaa 

>dme-mir-12 (-29.40)   [dme-miR-12:7-29]

      UG     U    C          -  gccuu 
uacggu  AGUAU ACAU AGGUACUGGU gu     a
||||||  ||||| |||| |||||||||| ||      
gugccg  ucaua ugua uucaugacca ca     a
      ca     c    -          a  accua 

>dme-mir-13a (-27.20)   [dme-miR-13a:48-69]

    u     c      -        a   --uc  cu 
uacg aacuc ucaaag gguuguga aug    ga  a
|||| ||||| |||||| |||||||| |||    ||   
gugc uUGAG AGUUUU CCGACACU Uac    cu  u
    u     U      A        A   ucau  au 

>dme-mir-13b-1 (-21.20)   [dme-miR-13b:43-64]

   -ug           u      acu    uauu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    a
   uUG           C      ---    uaac 

>dme-mir-13b-2 (-26.10)   [dme-miR-13b:46-67]

uauu   g          a      gcua      uu 
    aac cgucaaaaug cuguga    ugugga  u
    ||| |||||||||| ||||||    ||||||   
    uUG GCAGUUUUAC GACACU    AUacuu  g
--gu   A          C      ----      ca 

>dme-mir-14 (-28.30)   [dme-miR-14:41-61]

        c    cg      c     gcu 
ugugggag gaga  gggacu acugu   u
|||||||| ||||  |||||| |||||   a
auAUCCUC CUCU  UUCUGA Ugaua   u
        U    UU      C     aau 

>mmu-let-7g (-40.80)   [mmu-let-7g:7-28] [mmu-let-7g*:63-84]

  a   U        A            ugagg    -a  a    a 
cc ggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
|| ||| |||||||| ||||||||||||     ||||  || ||||  
gg cCG UUCCGUCA CGGACAUGUCAa     uaga  ac augg c
  a   -        C            -----    gg  -    c 

>mmu-let-7i (-42.10)   [mmu-let-7i:6-27] [mmu-let-7i*:62-83]

     U                 U   --------  u     ugu 
cuggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
||||| ||||||||||||||||| |||        || |||||   a
gaUCG UUCCGUCAUCGAACGCG Caa        uc gcccg   c
     -                 U   uagaggug  -     uua 

>mmu-mir-1-1 (-32.84)   [mmu-miR-1:49-70]

     gg c                gc     ugaacc 
gcuug  a acauacuucuuuauau  ccaua      u
|||||  | ||||||||||||||||  |||||       
cggac  U UGUAUGAAGAAAUGUA  GGUau      g
     uu A                -A     cgaauc 

>mmu-mir-15b (-20.70)   [mmu-miR-15b:4-25] [mmu-miR-15b*:42-63]

   U       C  C      UA   a  ac 
cug AGCAGCA AU AUGGUU  CAu cu  a
||| ||||||| || ||||||  ||| ||  g
gAU UCGUCGU UA UACUAA  gua ga  u
   C       U  U      GC   -  ac 

>mmu-mir-23b (-28.94)   [mmu-miR-23b:46-66]

  c   u   --          -  c      gugacu 
gg ugc ugg  guuccuggca ug ugauuu      u
|| ||| |||  |||||||||| || ||||||       
cc acg aCC  UAGGGACCGU AC ACUAaa      g
  a   c   AU          U  -      auuaga 

>mmu-mir-27b (-40.20)   [mmu-miR-27b*:7-28] [mmu-miR-27b:49-69]

                  AUUG        ugau     
aggugcAGAGCUUAGCUG    GUGAACag    uggu 
||||||||||||||||||    ||||||||    ||| u
uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
                  --GA        --uc     

>mmu-mir-29b-1 (-26.42)   [mmu-miR-29b*:6-27] [mmu-miR-29b:47-69]

    a          U      GU      uuaaa 
agga GCUGGUUUCA AUGGUG  UUAgau     u
|||| |||||||||| ||||||  ||||||     a
ucUU UGACUAAAGU UACCAC  GAUcug     g
    G          U      --      uuagu 

>mmu-mir-30a (-37.30)   [mmu-miR-30a:6-27] [mmu-miR-30a*:47-68]

   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaaa   c 

>mmu-mir-30b (-42.70)   [mmu-miR-30b:21-42] [mmu-miR-30b*:59-80]

c  ag     uuu     c            U   -        u aua 
 ua  ccaag   caguu aUGUAAACAUCC ACA CUCAGCUg c   c
 ||  |||||   ||||| |||||||||||| ||| |||||||| |    
 au  gguuc   gucga UGCAUUUGUAGG UGU GGGUCggu g   a
u  ga     --u     C            -   A        u cgu 

>mmu-mir-99a (-29.10)   [mmu-miR-99a:5-26]

    A         UC   U      g  aag 
caua ACCCGUAGA  CGA CUUGUG ug   u
|||| |||||||||  ||| |||||| ||    
gugu uggguaucu  gcu gaacgc gc   g
    c         uu   c      -  cag 

>mmu-mir-99b (-30.00)   [mmu-miR-99b:7-28] [mmu-miR-99b*:45-66]

     cC         AC   C    C - -   c 
ggcac  ACCCGUAGA  CGA CUUG G g ggc u
|||||  |||||||||  ||| |||| | | |||  
cuguG  UGGGUGUCU  GCU GAAC c c ccg u
     CC         GU   C    a a g   c 

>mmu-mir-101a (-47.30)   [mmu-miR-101a*:14-35] [mmu-miR-101a:51-71]

a       cuggc                  A    gucca 
 ggcugcc     UCAGUUAUCACAGUGCUG UGCu     u
 |||||||     |||||||||||||||||| ||||      
 ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
a       uaggA                  -    aaauc 

>mmu-mir-124-3 (-25.80)   [mmu-miR-124*:6-27] [mmu-miR-124:44-63]

    - C        A   GA        uaaug 
cucu g GUGUUCAC GCG  CCUUGAUu     u
|||| | |||||||| |||  ||||||||      
gaga C CGUAAGUG CGC  GGAAUuaa     c
    a -        G   AC        cauau 

>mmu-mir-125a (-34.70)   [mmu-miR-125a-5p:6-29] [mmu-miR-125a-3p:44-65]

 ug  UC  UG   C    UA        ----  a 
c  gg  CC  AGA CCUU  ACCUGUGA    gg c
|  ||  ||  ||| ||||  ||||||||    ||  
g  CC  GG  UCU GGAG  UGGACAcu    cc g
 gu  GA  GU   U    --        ggga  u 

>mmu-mir-125b-2 (-36.30)   [mmu-miR-125b-5p:7-28] [mmu-miR-125b*:46-67]

      UC  UG   C   A        -gg   u 
gccuag  CC  AGA CCU ACUUGUGA   uau u
||||||  ||  ||| ||| ||||||||   |||  
cggaUC  GG  UCU GGA UGAACAcu   aug u
      CA  GU   U   C        aca   a 

>mmu-mir-126 (-32.30)   [mmu-miR-126-5p:9-29] [mmu-miR-126-3p:46-67]

u   a  a           U       C cug   c 
 gac gc CAUUAUUACUU UGGUACG G   uga a
 ||| || ||||||||||| ||||||| |   |||  
 cug cG GUAAUAAUGAG GCCAUGC c   acu c
a   g  C           U       U -aa   u 

>mmu-mir-127 (-34.90)   [mmu-miR-127*:9-30] [mmu-miR-127:43-64]

----      ugCUG         G  C      --  a 
    ccagcc     AAGCUCAGA GG UCUGAU  uc g
    ||||||     ||||||||| || ||||||  || a
    ggUCGG     UUCGAGUCU CC AGGCUa  ag a
ggcu      -----         G  U      cu  a 

>mmu-mir-128-1 (-29.70)   [mmu-miR-128:44-64]

      uuc       uag      cu       u 
guugga   ggggccg   cacugu  gagaggu u
||||||   |||||||   ||||||  |||||||  
cgacuu   CUCUGGC   GUGACA  CUcuuua a
      UUU       CAA      --       c 

>mmu-mir-130a (-22.50)   [mmu-miR-130a:42-63]

-ga        c      ug  a  --  - ua 
   gcucuuuu acauug  cu cu  gu c  a
   |||||||| ||||||  || ||  || |   
   CGGGAAAA UGUAAC  GA ga  ca g  c
cUA        U      GU  C  gc  u ug 

>mmu-mir-9-2 (-29.00)   [mmu-miR-9:8-30] [mmu-miR-9*:45-66]

   g   UC               G      ug a 
guu uua  UUUGGUUAUCUAGCU UAUGAg  u u
||| |||  ||||||||||||||| ||||||  |  
caa aaU  AAGCCAAUAGAUCGA AUAcuu  g u
   a   GA               A      cu g 

>mmu-mir-132 (-37.30)   [mmu-miR-132:42-63]

    a         uuc          -g     
gggc accguggcu   gauuguuacu  uggg 
|||| |||||||||   ||||||||||  ||| a
cccG UGGUACCGA   CUGACAAUgg  gcca 
    C         CAU          ag     

>mmu-mir-133a-1 (-27.80)   [mmu-miR-133a*:7-27] [mmu-miR-133a:43-64]

    a       AA  U  A        gccuc 
gcua aGCUGGU  AA GG ACCAAAUc     u
|||| |||||||  || || ||||||||      
cgau UCGACCA  UU CC UGGUUUag     u
    G       AC  C  C        guaac 

>mmu-mir-134 (-34.50)   [mmu-miR-134:7-28]

     gU        U  -A   G    Gcgu  a 
agggu  GUGACUGG UG  CCA AGGG    gc c
|||||  |||||||| ||  ||| ||||    || u
uccca  cacugauc ac  ggu uccc    ug c
     ac        c  cg   g    -acu  u 

>mmu-mir-135a-1 (-43.92)   [mmu-miR-135a:17-39] [mmu-miR-135a*:56-77]

agg         u u          UU            uucua 
   ccucacugu c cUAUGGCUUU  AUUCCUAUGUGA     u
   ||||||||| | ||||||||||  ||||||||||||     u
   ggaguggca G GGUGCCGAGG  UAGGGAUAUacu     g
aua         u C          -U            cgcuc 

>mmu-mir-136 (-28.40)   [mmu-miR-136:5-26] [mmu-miR-136*:40-61]

        C     UUU          uuc 
gaggACUC AUUUG   UGAUGAUGGa   u
|||||||| |||||   ||||||||||   u
cUUCUGAG UAAAC   GCUACUAccu   a
        -     UCU          cga 

>mmu-mir-137 (-32.40)   [mmu-miR-137:45-67]

      ug   g           ug a     -  g 
cuucgg  acg guauucuuggg  g uaaua cg a
||||||  ||| |||||||||||  | ||||| || u
ggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
      GA   G           GU -     u  a 

>mmu-mir-138-2 (-30.40)   [mmu-miR-138:2-24]

--cAG             UCA     -ac   c  cg 
     CUGGUGUUGUGAA   GGCCG   gag ag  c
     |||||||||||||   |||||   ||| ||   
     gaccacagcacuu   ucggc   uuc uc  a
guugg             -ua     cca   -  cu 

>mmu-mir-140 (-39.30)   [mmu-miR-140:6-27] [mmu-miR-140*:45-65]

    -  A             A       uu   uc 
ccug cC GUGGUUUUACCCU UGGUAGg  acg  a
|||| || ||||||||||||| |||||||  |||   
ggac GG CACCAAGAUGGGA ACCAUcu  ugu  u
    a  -             C       --   cg 

>mmu-mir-141 (-34.40)   [mmu-miR-141*:6-27] [mmu-miR-141:48-69]

   u       --    U          Au    gaa 
ggg cCAUCUU  CCAG GCAGUGUUGG  gguu   g
||| |||||||  |||| ||||||||||  ||||   u
ccc GGUAGAA  GGUC UGUCACAAUc  ucga   a
   -       AU    -          -c    agu 

>mmu-mir-142 (-27.50)   [mmu-miR-142-5p:4-24] [mmu-miR-142-3p:40-62]

-ac           A         Uaa ag a 
   cCAUAAAGUAG AAGCACUAC   c  c c
   ||||||||||| |||||||||   |  |  
   GGUAUUUCAUC UUUGUGAUG   g  g u
guA           C         -Ug ga g 

>mmu-mir-144 (-27.90)   [mmu-miR-144:43-62]

      g        a         -a    gu 
ggcugg auaucauc uauacugua  guuu  g
|||||| |||||||| |||||||||  ||||   
cugaUC UGUAGUAG AUAUGACAU  caga  a
      A        -         ca    gu 

>mmu-mir-145 (-31.22)   [mmu-miR-145:7-29] [mmu-miR-145*:47-68]

    c  UC    U  C            uggau 
cuca gG  CAGU UU CCAGGAAUCCCU     g
|||| ||  |||| || ||||||||||||     c
gaGU UC  GUCA AA GGUCCUUAgggg     u
    -  UU    U  A            uagaa 

>mmu-mir-146a (-26.60)   [mmu-miR-146a:6-27]

    cU            C        auauc 
agcu  GAGAACUGAAUU CAUGGGUU     a
||||  |||||||||||| ||||||||      
ucga  uucuugacuuaa guguccag     a
    -c            a        acugu 

>mmu-mir-149 (-36.00)   [mmu-miR-149:4-26]

   U   G      G     A     g g   g 
ggc CUG CUCCGU UCUUC CUCCC u uuu u
||| ||| |||||| ||||| ||||| | |||  
ucg ggc ggggca ggagg gaggg a gag c
   u   g      g     -     - g   c 

>mmu-mir-150 (-40.20)   [mmu-miR-150:6-27] [mmu-miR-150*:42-63]

            AC   U       U -   u 
cccugUCUCCCA  CCU GUACCAG G cug g
||||||||||||  ||| ||||||| | ||| c
ggGAUAGGGGGU  GGA CAUGGUC c gac c
            CC   -       c a   u 

>mmu-mir-151 (-41.90)   [mmu-miR-151-5p:8-28] [mmu-miR-151-3p:43-63]

    c            CA          u uc 
ccug ccUCGAGGAGCU  CAGUCUAGUa g  u
|||| ||||||||||||  |||||||||| |  c
ggac GGAGUUCCUCGG  GUCAGAUCau c  c
    a            -A          c cu 

>mmu-mir-152 (-44.30)   [mmu-miR-152:47-67]

                 g  a    cc    cgg   c 
ccgggccuagguucugu au cacu  gacu   gcu u
||||||||||||||||| || ||||  ||||   |||  
ggcccgGGUUCAAGACA UA GUGA  CUga   cga g
                 G  C    --    ---   g 

>mmu-mir-153 (-29.60)   [mmu-miR-153:44-65]

     -             gu       -a  aa 
cggug ucauuuuugugac  ugcagcu  gu  u
||||| |||||||||||||  |||||||  ||  a
guuaC AGUGAAAACACUG  ACGUUga  cg  u
     U             AU       cc  ag 

>mmu-mir-154 (-25.00)   [mmu-miR-154:6-27] [mmu-miR-154*:42-63]

            U      UGCC    - uuu 
gaagaUAGGUUA CCGUGU    UUCG c   a
|||||||||||| ||||||    |||| |   u
uuuUUAUCCAGU GGCACA    AAgc g   u
            U      UACU    a ugc 

>mmu-mir-155 (-27.30)   [mmu-miR-155:4-26]

              UGU A        uu gcc 
cugUUAAUGCUAAU   G UAGGGGUu  g   u
||||||||||||||   | ||||||||  |    
gacaauuacgauug   c auccucag  c   c
              --u c        -u agu 

>ath-MIR156a (-57.10)   [ath-miR156a:21-40]

c      aac   -aa   a         -   -         a   ---      uu    ua 
 aagaga   gca   gaa cUGACAGAA GAG AGUGAGCAC caa   aggcaa  ugca  u
 ||||||   |||   ||| ||||||||| ||| ||||||||| |||   ||||||  ||||   
 uucucu   cgu   cuu gacugucuu cuc ucacucgug guu   uucguu  acgu  c
u      agu   ggc   a         u   g         c   cuc      -c    ua 

>ath-MIR156b (-94.40)   [ath-miR156b:47-66]

-      ----           u  u  uu    -aau   -a      ----a           -     -       au   g   cu      u 
 gcuaga    agagggagaga gg ga  gagg    gca  cagaga     aacUGACAGAA GAGAG UGAGCAC  gca gca  guuaug g
 ||||||    ||||||||||| || ||  ||||    |||  ||||||     ||||||||||| ||||| |||||||  ||| |||  ||||||  
 cgguuu    ucucucucucu uc cu  cucc    cgu  gucucu     uugacugucuu cucuc acucgug  ugu cgu  caauau u
u      aaac           c  u  cu    aguu   cc      auccg           u     c       cg   g   uu      c 

>ath-MIR156c (-50.40)   [ath-miR156c:12-31]

c  aua   a        -    -         a   ---     cuu     g 
 gc   gaa cUGACAGA AGAG AGUGAGCAC caa   aggca   ugcau u
 ||   ||| |||||||| |||| ||||||||| |||   |||||   ||||| u
 cg   cuu gacugucu ucuc ucacucgug guu   uucgu   acgua c
u  -gc   a        a    g         c   cuc     -uu     g 

>ath-MIR156d (-57.80)   [ath-miR156d:18-37]

g        aaa     --        -            a      g  agu       a 
 auggggga   gaagu  UGACAGAA GAGAGUGAGCAC caaagg ga   uguauaa a
 ||||||||   |||||  |||||||| |||||||||||| |||||| ||   ||||||| g
 uacuuccu   cuuca  acuguuuu cucucacucgug guuuuc uu   auauguu u
-        ---     au        u            c      g  ggu       u 

>ath-MIR156e (-61.90)   [ath-miR156e:7-26]

   a         -                    ggu   uu     ---    uu 
agg ggUGACAGA AGAGAGUGAGCACacauggu   uuc  gcaug   cuuu  u
||| ||||||||| ||||||||||||||||||||   |||  |||||   ||||  g
ucc ccacugucu ucucucauucguguguaucg   aag  cguac   ggga  a
   -         c                    ---   uu     uuu    uu 

>ath-MIR156f (-64.12)   [ath-miR156f:21-40]

   u  u    aauu  ---u      A  -                    ggcu   uu    auuug 
gag gg gagg    ga    ggUGAC GA AGAGAGUGAGCACacauggu    uuc  gcau     a
||| || ||||    ||    |||||| || ||||||||||||||||||||    |||  ||||     a
cuc cc cucc    cu    ccacug cu ucucucacucguguguaucg    aag  cgua     g
   -  u    cucu  uccc      c  a                    ----   uu    ccuug 

>ath-MIR157a (-48.30)   [ath-miR157a:4-24]

-   U         -A             u  -      a   uuc    c 
 gug UGACAGAAG  UAGAGAGCACaga ga ugagau caa   ggag a
 ||| |||||||||  ||||||||||||| || |||||| |||   ||||  
 cac acugucuuc  aucucucguguuu cu auucua guu   ucuu u
c   u         cg             c  c      c   ---    g 

>ath-MIR157b (-57.06)   [ath-miR157b:19-39]

u   ---a    -u    -a   U         -A             u  -      a   uuccuc 
 ggg    ggca  ugau  gug UGACAGAAG  UAGAGAGCACaga ga uaagau caa      g
 |||    ||||  ||||  ||| |||||||||  ||||||||||||| || |||||| |||      c
 ccc    ccgu  auug  cac acugucuuc  aucucucguguuu cu auucua guu      a
a   acua    uu    cc   u         cg             c  c      c   ucuucg 

>ath-MIR157c (-80.50)   [ath-miR157c:24-44]

     u     ------u    uu   u  U        -           uaaggaugacaugcaaguacauacauauauaucaucacaccgcauguggaugauaaaaua 
agguu gagag       gaug  ggu gU GACAGAAG AUAGAGAGCAC                                                            u
||||| |||||       ||||  ||| || |||||||| |||||||||||                                                            g
uccaa cucuc       cuau  cca ca cugucuuc uaucucucgug                                                            u
     u     uucuucu    uu   c  -        a           uuuucucaucucuacguccaagagagagaaagagagggagagaaagaaacuuaaacaaua 

>ath-MIR157d (-73.00)   [ath-miR157d:24-43]

        u     u ------u   u c         -           ua    ugcuaugcaaaacagacacagauauguguuucuaauuguauuucauacuuuaaccuc 
guggaggg gauag g       ggu g UGACAGAAG AUAGAGAGCAC  agga                                                         a
|||||||| ||||| |       ||| | ||||||||| |||||||||||  ||||                                                         a
caucucuc uuauc c       cca c acugucuuc uaucucucgug  uccu                                                         a
        u     u uuucuuu   - u         g           ua    uaucucuacgucuaucagaagaucgagaagauagaaagaaagaaaaaaauauaguug 

>ath-MIR158a (-40.60)   [ath-miR158a:63-82]

  -        u u   cuu           a   u     a  ug   a 
ac acgucauc c gug   cuuugucuaca uuu ggaaa ag  aug c
|| |||||||| | |||   ||||||||||| ||| ||||| ||  |||  
ug uguaguag g cau   GAAACAGAUGU AAA CCUuu uc  uac g
  c        u c   aAC           -   C     c  gu   c 

>ath-MIR159a (-75.90)   [ath-miR159a:163-183]

            aa        cau    -u    ------       aga      g  a  c    g uc     -    cu       guaa 
guagagcuccuu  aguucaaa   gagu  gagc      aggguaa   aaagcu cu ag uaug a  ccaua agcc  aauccuu    a
||||||||||||  ||||||||   ||||  ||||      |||||||   |||||| || || |||| |  ||||| ||||  |||||||    g
cAUCUCGAGGGA  UUAGGUUU   cuca  uucg      ucccguu   uuucga ga uc auac u  gguau uugg  uuaggaa    u
            AG        cuu    uu    guaauu       caa      g  c  u    g ua     a    -u       aaaa 

>ath-MIR160a (-47.50)   [ath-miR160a:4-24]

      C       CU         a   u   cc     a 
guaUGC UGGCUCC  GUAUGCCAu ugc gag  caucg g
|||||| |||||||  ||||||||| ||| |||  ||||| u
uauacg accgagg  uaugcggua gug cuc  guagc a
      u       ag         g   c   ca     u 

>ath-MIR160b (-42.30)   [ath-miR160b:5-25]

       C     C -           a  aaaac        ag 
gucgUGC UGGCU C CUGUAUGCCAc ag     aucgauuu  u
||||||| ||||| | ||||||||||| ||     ||||||||  u
caguacg acuga g gacaugcggug uc     uagcuaaa  u
       a     u a           a  ---ac        ac 

>ath-MIR160c (-49.80)   [ath-miR160c:5-25]

       C       C          ga ug aua         g 
guuaUGC UGGCUCC UGUAUGCCAc  g  g   ccgauuuug u
||||||| ||||||| ||||||||||  |  |   |||||||||  
caguacg acugagg acaugcggug  c  c   ggcuaaaau u
       a       a          gc gu ---         u 

>ath-MIR161 (-65.20)   [ath-miR161.2:38-58] [ath-miR161.1:47-67]

u    ga    gg      ac   uuuau     c   C      U            C         cc    uuuu     ----        
 gcuu  ucuc  uuuuug  cag     ugcgu gaU AAUGCA UGAAAGUGACUA AUCGGGGUu  gauu    uuguu    cuucaua 
 ||||  ||||  ||||||  |||     ||||| ||| |||||| |||||||||||| |||||||||  ||||    |||||    |||||| u
 cgaa  aggg  aaaaau  guu     acgua cua uuacgu acuuucacugau uggucccaa  cuaa    gacaa    gaaguag 
a    -a    ag      --   ----u     a   a      c            u         --    ---u     aggc        

>ath-MIR162a (-57.50)   [ath-miR162a:89-109]

u   ug -     -  - ug    ----u       g    c    c        c   c   gaac    u 
 agu  g aagaa ga g  agag     cgcugga gcag gguu aucgaucu uuc ugu    acau a
 |||  | ||||| || |  ||||     ||||||| |||| |||| |||||||| ||| |||    |||| a
 uca  u uucuu cu u  ucuc     gcGACCU CGUC CCAA UAGCUaga aag acg    ugua a
u   gu a     u  a gu    cguuu       A    U    A        u   u   aaaa    a 

>ath-MIR162b (-47.80)   [ath-miR162b:79-99]

    g    --       g    c    c       a    ------c        uuu 
gagu aagu  cgcugga gcag gguu aucgauc auuc       ugugaaua   a
|||| ||||  ||||||| |||| |||| ||||||| ||||       ||||||||    
cucg uucg  gcGACCU CGUC CCAA UAGCUag uaag       acauuugu   u
    -    uc       A    U    A       c    aacgaaa        uuu 

>ath-MIR163 (-125.00)   [ath-miR163:294-317]

acccgguggauaaaaucgaguuccaaccucuucaacgacaacgauuucaacacucucuuccaggaacaacuuccuccaggcagaugauacuaaagugcuggaguuccc      ugag  u     cau     aa     -a      a      ----gg     -   a 
                                                                                                            gguucc    ag gaguc   aucaa  ugcgc  uucguu ucacuu      uugaa ccc u
                                                                                                            ||||||    || |||||   |||||  |||||  |||||| ||||||      ||||| ||| u
                                                                                                            ccaagg    uc cucag   uaguu  augcg  agguaa agugga      aauuu ggg u
----ugugcccccuauuaUAGCUUCAAGGUUCAGGAGAAGUUgcugaaaucguagaugcuaaauucgugacgcgucaaugaagaagcuggcacgagaaggauucuucu      ugca  -     ---     -a     ca      -      gguuua     a   g 

>ath-MIR164a (-48.20)   [ath-miR164a:19-39]

      ga u   c            CA   C         ccaa    ---c   a 
ggguga  a cuc auguUGGAGAAG  GGG ACGUGCAaa    caaa    acg a
||||||  | ||| ||||||||||||  ||| |||||||||    ||||    ||| a
cccacu  u gag uacaaccucuuc  uuc ugcacguuu    guuu    ugc u
      uc c   -            aa   a         auuc    acuc   c 

>ath-MIR164b (-65.50)   [ath-miR164b:3-23]

     A    CA         CAuu          a    ----   u    c    --a      g     a     a 
gaUGG GAAG  GGGCACGUG    acuagcucau uaua    cac cuca caca   augcgu uauau ugcgg a
||||| ||||  |||||||||    |||||||||| ||||    ||| |||| ||||   |||||| ||||| |||||  
cuacc cuuc  cccguguac    ugauugagua guau    gug gagu gugu   ugugua auaua guguu u
     a    ua         uucu          g    agua   u    u    gug      g     -     u 

>ath-MIR165a (-48.70)   [ath-miR165a:86-106]

    a    a   uu      a           auagauauauacauguguaug 
guug gggg aug  gucugg ucgaggauauu                     u
|||| |||| |||  |||||| |||||||||||                     u
caac CCCC UAC  CGGACC GGCUccuauga                     a
    c    C   UU      A           gagauacuagugaacuuagua 

>ath-MIR165b (-65.30)   [ath-miR165b:137-157]

u  --a     u   -u -     u    a   uu      a    g        aaac    acac    uu      u   a          g 
 ga   gaggc auu  c uguug gggg aug  guuugg ucga gauaucau    gcau    augu  auaugu aug ugcauuauau a
 ||   ||||| |||  | ||||| |||| |||  |||||| |||| ||||||||    ||||    ||||  |||||| ||| |||||||||| c
 cu   uuccg uaa  g acaac CCCC UAC  CGGACC GGCU cuauggua    cgua    uaca  uauaua uac auguaaugua u
a  aac     u   uu u     u    C   UU      A    g        -cac    --ca    --      -   -          g 

>ath-MIR166a (-68.00)   [ath-miR166a:134-154]

-a     uuucu uu   a     c  uu      cu       u    cuc      u   uguuggaucucuuucgaucuaacaa 
  ggggc     c  uug gggga ug  gucugg  cgaggac cugg   gcucua uca                         u
  |||||     |  ||| ||||| ||  ||||||  ||||||| ||||   |||||| |||                          
  ccucg     g  aac CCCCU AC  CGGACC  GCUucug gauu   ugggau agu                         c
uc     ---uu uu   c     U  UU      AG       c    --u      u   uuagacuuuagacuuccaaguuaag 

>ath-MIR166b (-52.40)   [ath-miR166b:96-116]

u  a     c  uu      cu   g   u  --u        a     -   --      u 
 ug gggga ug  gucugg  cga gac cu   auucuaau caauc uca  uuugaa a
 || ||||| ||  ||||||  ||| ||| ||   |||||||| ||||| |||  ||||||  
 ac CCCCU AC  CGGACC  GCU cug ga   ugggauua guuag agu  agacuu c
a  c     U  UU      AG   g   u  uuu        -     u   cu      a 

>ath-MIR166c (-46.50)   [ath-miR166c:103-123]

     --u   u    a a   u  uu      cu     -    ga  aagagaaucacucgaauuaau 
gcgau   uag guug g gga ug  gucugg  cgagg ucau  ag                     u
|||||   ||| |||| | ||| ||  ||||||  ||||| ||||  ||                     u
cgcua   auc caau C CCU AC  CGGACC  GCUcu agua  uc                     g
     uuc   -    c C   U  UU      AG     u    ga  ccaaaagaauuaaacaagaag 

>ath-MIR166d (-41.60)   [ath-miR166d:87-107]

     a a     auu      cu     -    ga  aagaucgguagauugauu 
gguug g ggaau   gucugg  cgagg ucau  ag                  c
||||| | |||||   ||||||  ||||| ||||  ||                   
ccaac C CCUUA   CGGACC  GCUcu agua  uc                  a
     c C     CUU      AG     u    aa  ccuaaagugagaaauuuu 

>ath-MIR166e (-49.30)   [ath-miR166e:119-139]

u           uu      ca   g c c      uagaucuauauuugauuauauauauaugucucuu 
 ugaggggaaug  gucugg  cga g c uuaacu                                  c
 |||||||||||  ||||||  ||| | | ||||||                                  u
 acuCCCCUUAC  CGGACC  GCU c g aauugg                                  u
a           UU      AG   g a u      cauuuuacuaguaaguacauaucugauuacuuau 

>ath-MIR166f (-42.10)   [ath-miR166f:78-98]

     c   u      u      cu   g c    -ca   -  ---      u 
aaguu agg gaauga gccugg  cga a cauu   auc uc   augauc c
||||| ||| |||||| ||||||  ||| | ||||   ||| ||   ||||||  
uucaa uCC CUUACU CGGACC  GCU u guag   uag ag   uauuag a
     c   C      U      AG   g a    uag   u  caa      u 

>ath-MIR166g (-47.90)   [ath-miR166g:85-105]

     --uua     u  a      uu      cu     -    gg     aauuc   a 
gcgau     ggguu ag ggaaug  guuugg  cgagg ucau  agagu     guu a
|||||     ||||| || ||||||  ||||||  ||||| ||||  |||||     ||| c
cgcua     uccaa uC CCUUAC  CGGACC  GCUcu agua  ucuca     caa c
     uuuua     c  C      UU      AG     u    aa     aaacu   c 

>ath-MIR167a (-57.90)   [ath-miR167a:19-39]

u     ac   -  u u a         C              -  -  -u     -au  u    ug    
 ggugc  cgg ca c g UGAAGCUGC AGCAUGAUCUAauu ag cu  ucuuu   cc uugu  ugu 
 |||||  ||| || | | ||||||||| |||||||||||||| || ||  |||||   || ||||  || u
 ccacg  guc gu g c acuuugacg uuguacuagauuag uc ga  agaga   gg agca  acu 
c     cu   a  u c c         c              c  u  cu     auu  u    gu    

>ath-MIR167b (-48.30)   [ath-miR167b:10-30]

     ca     A    - -C           u   u    aa   aug      g 
gggaa  agUGA GCUG C  AGCAUGAUCUA cuu gguu  gag   aaugug a
|||||  ||||| |||| |  ||||||||||| ||| ||||  |||   ||||||  
uccuu  ucacu cgac g  ucguacuggau gaa ccaa  uuc   uuauac a
     cc     c    a uc           c   c    -a   --g      a 

>ath-MIR168a (-69.60)   [ath-miR168a:18-38]

    a   -  c  g      C          U     A       ggcugacacagccucgugacuuu 
cacc ucg gg uc gauUCG UUGGUGCAGG CGGGA ccaauuc                       u
|||| ||| || || |||||| |||||||||| ||||| |||||||                        
gugg agc cc ag cuaagu aacuacguuc gcccu gguuagg                       a
    -   u  u  g      c          c     a       gacgaguguuugguuauuuccaa 

>ath-MIR168b (-62.50)   [ath-miR168b:19-39]

     gg   u   g      C          U     Acugauug   g  --      a    uc 
uuacc  cgg cuc gauUCG UUGGUGCAGG CGGGA        gcu ac  accgac cgug  u
|||||  ||| ||| |||||| |||||||||| |||||        ||| ||  |||||| ||||   
agugg  gcc gag cuaagu aacuauguuc gcccu        cga ug  ugguug guac  u
     -a   u   g      c          u     --------   g  uu      -    ug 

>ath-MIR169a (-77.86)   [ath-miR169a:18-38]

      -           C         UG           uaaaugaucuuucuuuauacucuauuaagacaauuuaguuucaaacuuuuuuuuuuuuuuuuuuuugaagg 
gugacg aaaguagugug AGCCAAGGA  ACUUGCCGAuu                                                                       a
|||||| ||||||||||| |||||||||  |||||||||||                                                                       u
cgcugu uuucauugcac ucgguuccu  ugaacggcuag                                                                       u
      g           a         gu           uacaaugaaaaagaaaaaccaaaauauauagaacauaaaauaugccuuauuauauaggauuaaagaaggac 

>ath-MIR170 (-40.49)   [ath-miR170:59-79]

        uc cucu         c       c      ucucuuu 
cgagagag  c    gauauuggc ugguuca ucagau       u
||||||||  |    ||||||||| ||||||| ||||||        
gcucucuc  g    CUAUAACUG GCCGAGU AGUcua       a
        cu -acu         U       U      cucaauc 

>ath-MIR171a (-46.60)   [ath-miR171a:88-108]

          cc  uu         c       c      cuuaccugaccacacacguag 
augagagagu  cu  gauauuggc ugguuca ucagau                     a
||||||||||  ||  ||||||||| ||||||| ||||||                      
ugcucucuca  ga  CUAUAACCG GCCGAGU AGUcua                     u
          -u  cu         C       U      uuagaucucucuuauuacaua 

>ath-MIR172a (-43.00)   [ath-miR172a:78-98]

--u c  ug               a   cuguugauggacgguggugauuc 
   g ug  gcaucaucaagauuc cau                       a
   | ||  ||||||||||||||| |||                        
   c AC  CGUAGUAGUUCUAAG gua                       c
cgg U  GU               A   aaaguaucucuugaaacaccucu 

>ath-MIR172b (-36.40)   [ath-miR172b*:5-24] [ath-miR172b:71-91]

--a gc      C           A    gaa  uga    u        
   g  GCAGCA CAUUAAGAUUC Caug   au   uaaa acccuaa 
   |  |||||| ||||||||||| ||||   ||   |||| |||||| a
   c  CGUCGU GUAGUUCUAAG guau   ua   guuu ugggauu 
caa UA      A           A    aug  -ua    -        

>ath-MIR173 (-43.07)   [ath-miR173:9-30]

     a            G      A      u  ucaaaaaag   u  u 
uaagu cuUUCGCUUGCA AGAGAA UCACag gg         uug ag u
||||| |||||||||||| |||||| |||||| ||         ||| ||  
guucg gaaagcgaaugu ucucuu aguguc cc         aau uc u
     a            g      -      u  uuucucuga   -  u 

>ath-MIR159b (-85.60)   [ath-miR159b:168-188]

------g            ga       u       uu   ------    ug    -      g  a  c     auc      -----         aau       
       gaagagcuccuu  aguucaa ggagggu  agc      aggg  aagu aaagcu cu ag uaugg   ccauaa     gccuuauca   ucaaua 
       ||||||||||||  ||||||| |||||||  |||      ||||  |||| |||||| || || |||||   ||||||     |||||||||   ||||| u
       cUUCUCGAGGGA  UUAGGUU cuucuca  ucg      uccc  uuca uuucga ga uc auacc   gguauu     uggaauagu   aguuaa 
cucucua            AG       U       cu   guaauu    ca    c      g  c  u     gua      uuuuu         ---       

>mmu-mir-10b (-24.50)   [mmu-miR-10b:5-27] [mmu-miR-10b*:45-66]

     A    G     C          -ug  ac 
uauaU CCCU UAGAA CGAAUUUGUG   gu  c
||||| |||| ||||| ||||||||||   ||   
auAUA GGGG AUCUU GCUUAGACac   ua  c
     A    -     A          uga  ca 

>mmu-mir-129-1 (-30.90)   [mmu-miR-129-5p:6-26]

     -       C   CU      G   uu  -  c 
uggau CUUUUUG GGU  GGGCUU Cug  cu cu g
||||| ||||||| |||  |||||| |||  || ||  
aucua gaaaaac cca  cccgaa gac  ga ga a
     u       c   uu      g   -u  u  c 

>mmu-mir-181a-2 (-28.73)   [mmu-miR-181a:7-29] [mmu-miR-181a-2*:54-75]

   u  A   U      CU       A    gggauuc 
cca gg ACA UCAACG  GUCGGUG GUuu       a
||| || ||| ||||||  ||||||| ||||       a
gGU CC UGU AGUUGC  CAGCCAc caaa       a
   U  A   C      --       -    aaaacaa 

>mmu-mir-182 (-29.14)   [mmu-miR-182:7-31]

     uU       U -G      UCA      uaaggu 
accau  UUGGCAA G  UAGAAC   CACCGg      a
|||||  ||||||| |  ||||||   ||||||       
uggua  aaccguu c  aucuug   guggcc      a
     uc       - ag      ---      cagggu 

>mmu-mir-183 (-26.90)   [mmu-miR-183:6-27] [mmu-miR-183*:45-66]

    g      --AC     GA        --   ac 
cugu UAUGGC    UGGUA  AUUCACUg  uga  a
|||| ||||||    |||||  ||||||||  |||   
gaca AUACCG    GCCAU  UAAGUGac  acu  g
    A      GGAA     --        ug   cu 

>mmu-mir-184 (-28.90)   [mmu-miR-184:45-66]

   u         c      ag     -    ug 
ccu uccuuauca uuuucc  ccagc uuug  a
||| ||||||||| ||||||  ||||| ||||   
gga GGGAAUAGU AAGAGG  GGUug gaau  c
   U         C      CA     u    cu 

>mmu-mir-185 (-38.00)   [mmu-miR-185:7-28]

      UG   A     G         Au  uc 
agggau  GAG GAAAG CAGUUCCUG  gg  c
||||||  ||| ||||| |||||||||  ||   
uuccug  cuc cuuuc gucggggac  cc  c
      gu   -     g         --  uc 

>mmu-mir-186 (-33.44)   [mmu-miR-186:7-28] [mmu-miR-186*:46-67]

                U    UU      ucucau 
acuuucCAAAGAAUUC CCUU  GGGCUu      u
|||||||||||||||| ||||  ||||||       
ugaaGGGUUUUUUAAG GGAA  CCCGaa      u
                U    -U      uuuuau 

>mmu-mir-187 (-28.90)   [mmu-miR-187:40-61]

uca    a           c  -  c - ug 
   ggcu caacacaggac cg gg g c  c
   |||| ||||||||||| || || | |   
   CCGA GUUGUGUUCUG GC cc c g  u
-GG    C           U  U  c a uc 

>mmu-mir-188 (-30.30)   [mmu-miR-188-5p:6-26] [mmu-miR-188-3p:45-65]

   ca  UC         GU      -ugag u 
ucu  CA  CCUUGCAUG  GGAGGG     c c
|||  ||  |||||||||  ||||||     | u
agg  GU  GGGACGUAC  CCUCcc     g c
   AC  UU         AC      caaaa u 

>mmu-mir-24-1 (-26.32)   [mmu-miR-24-1*:6-28] [mmu-miR-24:44-65]

    g  G   A         UA     ucuca 
cucc GU CCU CUGAGCUGA  UCAGU     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacac 

>mmu-mir-190 (-23.60)   [mmu-miR-190:6-27]

    - UG               UA     uuau 
cugu g  AUAUGUUUGAUAUAU  GGUug    u
|||| |  |||||||||||||||  |||||     
gaca c  uauacgaacuauaua  ucaac    u
    u cu               --     cuaa 

>mmu-mir-191 (-36.90)   [mmu-miR-191:7-29] [mmu-miR-191*:49-70]

      C          C  AA       uu  -  c 
agcggg AACGGAAUCC AA  GCAGCUG  gu cu c
|||||| |||||||||| ||  |||||||  || ||  
ucguCC UUGCUUUAGG UU  CGUCGac  ua ga a
      C          -  CA       cu  c  g 

>hsa-mir-192 (-39.49)   [hsa-miR-192:24-44] [hsa-miR-192*:67-88]

gccgagacc   u  --   g g  C         -     A       ugcucuc 
         gag gc  aca g cu UGACCUAUG AAUUG CAGCCag       g
         ||| ||  ||| | || ||||||||| ||||| |||||||        
         cuc cg  ugu u GA ACUGGAUAC UUAAC GUCgguc       u
cgaccguaa   -  cu   a g  C         C     C       uccccuc 

>mmu-mir-193 (-32.00)   [mmu-miR-193*:7-28] [mmu-miR-193:41-62]

   ag     U     CG   A  A    agu 
gag  cUGGG CUUUG  GGC AG UGAg   g
|||  ||||| |||||  ||| || ||||    
cuc  GACCC GAAAC  CCG UC Acuu   u
   cU     U     AU   G  A    gac 

>mmu-mir-194-1 (-34.10)   [mmu-miR-194:7-28]

      U         A      G    --   u 
aucggg GUAACAGCA CUCCAU UGGA  cug g
|||||| ||||||||| |||||| ||||  |||  
uagucu cauugucgu gaggug accu  ggc c
      u         c      -    ua   u 

>mmu-mir-195 (-49.40)   [mmu-miR-195:21-41]

a    ca     -     cucU          -A          u  gga 
 cacc  acucu ccugg    AGCAGCACAG  AAUAUUGGCa gg   a
 ||||  ||||| |||||    ||||||||||  |||||||||| ||   g
 gugg  uggga ggacc    ucgucguguc  uuauaaccgu cu   u
a    --     c     ----          gg          -  gag 

>hsa-mir-196a-1 (-25.80)   [hsa-miR-196a:7-28]

      UA   A    C         - Gc ugg 
gugaau  GGU GUUU AUGUUGUUG G  c   g
||||||  ||| |||| ||||||||| |  |   u
cacuua  cca caaa uacaacaac c  g   u
      gc   c    u         a aa ucu 

>hsa-mir-197 (-42.40)   [hsa-miR-197:48-69]

        c    a       ca    ga   -   a 
ggcugugc gggu gagaggg  gugg  ggu aag g
|||||||| |||| |||||||  ||||  ||| |||  
ccgguaCG CCCA CUCUUCC  CACU  cca uuc c
        A    C       AC    Uc   c   u 

>hsa-mir-198 (-15.44)   [hsa-miR-198:6-27]

     -GG  CAG        U   UUCcug 
ucauu   UC   AGGGGAGA AGG      u
|||||   ||   |||||||| |||       
aguaa   ag   ucucuucu ucc      g
     aua  aua        -   uuuuua 

>mmu-mir-199a-1 (-28.21)   [mmu-miR-199a-5p:6-28] [mmu-miR-199a-3p:46-67]

   auC       U        C   -------    g 
gcc   CCAGUGU CAGACUAC UGU       UCag a
|||   ||||||| |||||||| |||       ||||  
cgg   GGUUACA GUCUGAUG ACA       gguc g
   AUU       C        -   uguacag    g 

>hsa-mir-199a-1 (-29.20)   [hsa-miR-199a-5p:6-28] [hsa-miR-199a-3p:47-68]

   aaC       U        C   U  ---g     
gcc   CCAGUGU CAGACUAC UGU Ca    gagg 
|||   ||||||| |||||||| ||| ||    ||| c
cgg   GGUUACA GUCUGAUG ACA gu    cucu 
   AUU       C        -   u  guaa     

>mmu-mir-200b (-31.20)   [mmu-miR-200b*:9-30] [mmu-miR-200b:45-66]

     ggc    -    UG     C      u gug 
gccgu   CAUC UUAC  GGCAG AUUGGA a   u
|||||   |||| ||||  ||||| |||||| |    
cggcA   GUAG AAUG  CCGUC UAAUcu u   c
     ---    U    GU     A      c agu 

>mmu-mir-201 (-32.60)   [mmu-miR-201:6-27]

        U   U            UUc   a 
uaccuUAC CAG AAGGCAUUGUUC   uau u
|||||||| ||| ||||||||||||   |||  
augggaug guc uuccgugacaag   aua u
        u   u            uaa   a 

>mmu-mir-202 (-35.40)   [mmu-miR-202-5p:9-29] [mmu-miR-202-3p:45-66]

     u           -A          Ug       
guucc uuUUCCUAUGC  UAUACUUCUU  uggauc 
||||| |||||||||||  ||||||||||  ||||| u
cgagg AGAAGGGUACG  AUAUGGAGAa  aucugg 
     u           CG          --       

>mmu-mir-203 (-35.60)   [mmu-miR-203*:10-31] [mmu-miR-203:48-69]

   u    c         U    G    A     c    
gcc gguc AGUGGUUCU GACA UUCA CAguu ugu 
||| |||| ||||||||| |||| |||| ||||| || a
cgg ccaG UCACCAGGA UUGU AAGU Guuaa acg 
   c    A         U    A    -     c    

>mmu-mir-204 (-33.16)   [mmu-miR-204:6-27]

u    U          A     U    gagaau 
 ggac UCCCUUUGUC UCCUA GCCU      a
 |||| |||||||||| ||||| ||||      u
 cuug agggaaacgg agggu cgga      a
a    c          a     -    ggaagu 

>mmu-mir-205 (-33.90)   [mmu-miR-205:7-28]

      UC           C        ucuua 
cucuug  CUUCAUUCCAC GGAGUCUG     u
||||||  ||||||||||| ||||||||      
gaggac  gaagugaggug cuuuagac     g
      uc           a        caacc 

>mmu-mir-206 (-31.80)   [mmu-miR-206:46-67]

     -                  c u     auau 
ccagg ccacaugcuucuuuauau c cauag    c
||||| |||||||||||||||||| | |||||    u
gguuu GGUGUGUGAAGGAAUGUA G GUauc    c
     u                  A -     acga 

>mmu-mir-207 (-43.50)   [mmu-miR-207:52-74]

    c     u      cu  -         -     g ag 
aagg agggg gagggg  gc gggaggagc cgggc g  g
|||| ||||| ||||||  || ||||||||| ||||| |   
uuuc uCUCC CUCCUC  CG UCCUCUUCG guucg c  c
    -     -      -U  G         c     g gu 

>hsa-mir-208a (-32.60)   [hsa-miR-208a:44-65]

u   g           g  c  gg      c  a 
 gac ggcgagcuuuu gc cg  uuauac ug u
 ||| ||||||||||| || ||  |||||| || g
 cug uUGUUCGAAAA CG GC  AAUAug ac c
a   g           A  A  AG      c  u 

>hsa-mir-129-1 (-29.40)   [hsa-miR-129-5p:5-25] [hsa-miR-129*:49-70]

    -       C   CU      G   uu cu  c 
ggau CUUUUUG GGU  GGGCUU Cug  c  cu a
|||| ||||||| |||  |||||| |||  |  ||  
ucUA GAAAAAC CCA  CCCGAA gac  g  ga a
    U       C   UU      g   -u au  c 

>hsa-mir-148a (-28.20)   [hsa-miR-148a*:6-27] [hsa-miR-148a:44-65]

              -  -A    CC    -   ag 
gaggcAAAGUUCUG AG  CACU  GACU cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 

>hsa-mir-30c-2 (-25.24)   [hsa-miR-30c:7-29] [hsa-miR-30c-2*:47-68]

   uacU       U   ACA         guggaa 
aga    GUAAACA CCU   CUCUCAGCu      a
|||    ||||||| |||   |||||||||       
ucu    CAUUUGU GGA   GAGGGUCga      g
   uUCU       C   --A         aagaau 

>hsa-mir-30d (-28.10)   [hsa-miR-30d:6-27] [hsa-miR-30d*:46-67]

guu  U         CCC           gua  ac 
   gu GUAAACAUC   GACUGGAAGcu   ag  a
   || |||||||||   |||||||||||   ||   
   CG CGUUUGUAG   CUGACUUUCga   uc  c
cau  U         --A           --a  ga 

>mmu-mir-122 (-33.20)   [mmu-miR-122:6-27]

      GG       C           -  uc 
agcugU  AGUGUGA AAUGGUGUUUG ug  c
||||||  ||||||| ||||||||||| ||  a
ucgaua  ucacacu uuaccgcaaac ac  a
      aa       a           u  ca 

>mmu-mir-143 (-36.60)   [mmu-miR-143:40-60]

      g         g      u  -  ag 
ccugag ugcagugcu caucuc gg uc  u
|||||| ||||||||| |||||| || ||   
ggaCUC AUGUCACGA GUAGAG cu ag  u
      G         A      U  g  gg 

>mmu-mir-30e (-52.50)   [mmu-miR-30e:17-38] [mmu-miR-30e*:59-80]

g        uu  ua            UU           g aaggu 
 ggcagucu  gc  cUGUAAACAUCC  GACUGGAAGcu u     g
 ||||||||  ||  ||||||||||||  ||||||||||| |      
 ccgucgga  cg  GACAUUUGUAGG  CUGACUUUCga g     u
a        --  gC            --           g agagu 

>hsa-mir-139 (-34.90)   [hsa-miR-139-5p:7-28] [hsa-miR-139-3p:44-65]

gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUCCAGu u  c
   ||||||| ||| || |||||||||||| |  u
   aUGAGGU GUC CG GCGCAGAGGucg a  c
-ca       U   C  -            g gg 

>hsa-mir-147 (-24.10)   [hsa-miR-147:47-66]

      -a   caa      ug     ---aca   g 
aaucua  aga   cauuuc  cacac      cca a
||||||  |||   ||||||  |||||      ||| c
uuagau  UCU   GUAAAG  GUGUG      ggu u
      CG   -UC      GU     accgaa   a 

>hsa-mir-7-1 (-48.00)   [hsa-miR-7:24-46] [hsa-miR-7-1*:66-87]

--u    u  -      a  u        A     A       U      --     a 
   ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUGUu  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguAUACC UCUGA CACUAAA CAACag  aaauc a
gac    c  u      -  c        G     -       -      cu     a 

>hsa-mir-7-2 (-46.90)   [hsa-miR-7:32-54] [hsa-miR-7-2*:72-93]

cuggauacaga    acc       c    cU  A     A U     U       ucuua 
           gugg   ggcuggc ccau  GG AGACU G GAUUU GUUGUug     c
           ||||   ||||||| ||||  || ||||| | ||||| |||||||      
           cgcu   ccgaccg gguA  CC UCUGA C CUAAA CAACaac     u
----------a    --a       u    AU  A     C -     -       ucgcg 

>hsa-mir-7-3 (-39.10)   [hsa-miR-7:31-53]

agauua   u  cugu     a        U  AA A  A       U      c  au 
      gag gg    ggucu gugcugug GG  G CU GUGAUUU GUUGUu ug  g
      ||| ||    ||||| |||||||| ||  | || ||||||| |||||| ||   
      cuu cc    ucaga cgcgauac cc  c ga cacugaa caacag au  u
---cag   c  ----     -        u  gg c  -       -      c  ca 

>hsa-mir-10a (-32.39)   [hsa-miR-10a:22-44] [hsa-miR-10a*:63-84]

-----gauc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguAUA GGGG AUCUA GCUUAAACac       u
ucucgccuc   aau    uu        A    -     U          ugguguu 

>hsa-mir-10b (-45.00)   [hsa-miR-10b:27-49] [hsa-miR-10b*:66-87]

cca      guaa     u        A    G     C          -ug   u 
   gagguu    cguug cuauauaU CCCU UAGAA CGAAUUUGUG   gua c
   ||||||    ||||| |||||||| |||| ||||| ||||||||||   |||  
   cuucaa    guagc gguauaUA GGGG AUCUU GCUUAGACAc   uau c
--a      aaac     u        A    -     A          uga   g 

>hsa-mir-34a (-50.70)   [hsa-miR-34a:22-43] [hsa-miR-34a*:64-85]

-    -a  --    -  ug     uU        -   A          -guga  a 
 ggcc  gc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu     gc a
 ||||  ||  |||| ||  |||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  gcac uc  gaaga  CCGUCAUA GAA CGACUAACga     ug u
c    gg  uu    g  gu     UC        U   -          aggaa  a 

>hsa-mir-181a-2 (-54.00)   [hsa-miR-181a:39-61] [hsa-miR-181a-2*:77-98]

agaagggcuaucaggccagccuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguuCC UGU AGUUGC  CAGUCAC CAaa    u
------------------------a             A   C      --       -    aaag 

>hsa-mir-181b-1 (-34.90)   [hsa-miR-181b:36-58]

ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUu   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     guaaguaac   agucacucga   gg g
-------------------uucgcc       -caac         --a          aca  u 

>hsa-mir-181c (-44.66)   [hsa-miR-181c:27-48] [hsa-miR-181c*:65-86]

c   -aaauuug   a  g  ug   gAA        CU       A     ggca 
 gga        cca gg uu  ggg   CAUUCAAC  GUCGGUG GUuug    g
 |||        ||| || ||  |||   ||||||||  ||||||| |||||    c
 ccu        ggu cc ga  ccC   GUGAGUUG  CAGCUAC CAAac    u
u   accguuaa   -  g  gu   -AG        -C       -     ggac 

>hsa-mir-182 (-47.14)   [hsa-miR-182:23-46] [hsa-miR-182*:67-87]

ga    -  --ug    c      uU       U -G      UCA      ugaggu 
  gcug cu    ccuc ccccgu  UUGGCAA G  UAGAAC   CACUgg      a
  |||| ||    |||| ||||||  ||||||| |  ||||||   ||||||       
  cggc ga    ggag gggguA  AACCGUU C  AUCUUG   GUggcc      a
ca    c  cuca    c      UC       - AG      ---      uaggac 

>hsa-mir-183 (-41.90)   [hsa-miR-183:27-48] [hsa-miR-183*:66-87]

ccgcaga   u  ---c  -         g      --AC     GA        --   ac 
       gug ga    uc cuguucugu UAUGGC    UGGUA  AUUCACUg  uga  a
       ||| ||    || ||||||||| ||||||    |||||  ||||||||  |||   
       cac cu    ag gacgagaca AUACCG    GCCAU  UAAGUGac  acu  g
-----ag   -  agac  a         A      GGAA     --        ug   cu 

>hsa-mir-187 (-47.91)   [hsa-miR-187*:35-56] [hsa-miR-187:71-92]

g u      caccaugacacag    aga    g    A           C  -  C - ug 
 g cgggcu             ugug   ccuc GGCU CAACACAGGAC CG GG g c  c
 | ||||||             ||||   |||| |||| ||||||||||| || || | |   
 c gccugg             acgc   ggaG CCGA GUUGUGUUCUG GC cc c g  u
a -      -------------    -ag    G    C           U  U  c a uc 

>hsa-mir-196a-2 (-51.20)   [hsa-miR-196a:25-46] [hsa-miR-196a*:62-83]

-ug    - -uc       --c                  A          a ug   
   cucg c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
   |||| |   |||||||   |||||||||||||||||| |||||||||| |  | u
   gagc g   uuggcug   acauuGAGUCCGUCAAAG ACAACGGCuc a  uu 
cgg    u cuu       acu                  A          a gu   

>hsa-mir-199a-2 (-43.20)   [hsa-miR-199a-5p:31-53] [hsa-miR-199a-3p:70-91]

aggaa   u  ggaga    -    c   gcC       U        C   --UCa  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| |||     ||   
     cga ga     ggga cggg cag   GGUUACA GUCUGAUG ACA     cc  a
----a   -  -----    a    u   AUU       C        -   uguug  gu 

>hsa-mir-199b (-42.90)   [hsa-miR-199b-5p:26-48] [hsa-miR-199b-3p:65-86]

cca    -acacc    cu  -     C       U       U    U  ----  a 
   gagg      ucca  cc gucua CCAGUGU UAGACUA CUGU Ca    gg c
   ||||      ||||  || ||||| ||||||| ||||||| |||| ||    ||  
   cucc      gggu  gg cggAU GGUUACA GUCUGAU GACA gu    cc u
-gg    cagauu    cg  u     U       C       -    u  uaaa  c 

>hsa-mir-203 (-56.40)   [hsa-miR-203:65-86]

g     gg a u   g         c         u    g    a     - ug 
 uguug  g c cgc cgcuggguc agugguucu aaca uuca caguu c  u
 |||||  | | ||| ||||||||| ||||||||| |||| |||| ||||| |   
 gcgac  c g gcg gcggcccaG UCACCAGGA UUGU AAGU Guuaa g  a
a     ag g c   g         A         U    A    -     c cg 

>hsa-mir-204 (-42.26)   [hsa-miR-204:33-54]

ggcuacagucuuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acuug agggaaacgg agggu cgga      a
--------------c   c  u    uua     c          a     -    ggaagu 

>hsa-mir-205 (-49.02)   [hsa-miR-205:34-55] [hsa-miR-205*:71-91]

aaagaucc    acaa       gcuu      UC           C        ucuca 
        ucag    uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        ||||    |||||||    ||||||  ||||||||||| ||||||||     a
        aguc    agguacg    gaggaC  GAAGUGAGGUG CUUUAGac     c
------ac    ---g       ----      UU           A        caacc 

>hsa-mir-210 (-60.70)   [hsa-miR-210:66-87]

accc  ca    -c           gg     c   cc   -      c  c -     
    gg  gugc  uccaggcgcag  cagcc cug  cac cgcaca ug g cugc 
    ||  ||||  |||||||||||  ||||| |||  ||| |||||| || | ||| c
    cc  cgcg  ggguccguguc  GUCGG GAC  GUG GCGUGU ac c gacc 
---c  ag    ac           uA     C   -A   U      C  c a     

>hsa-mir-211 (-45.80)   [hsa-miR-211:26-47]

-  --ac   -gccau     uug     U         CA     C    agg  u 
 uc    cug      gugac   ugggc UCCCUUUGU  UCCUU GCCU   gc c
 ||    |||      |||||   ||||| |||||||||  ||||| ||||   || u
 ag    gac      cacug   acucg ggggaaacg  aggga cggg   cg g
g  gcac   acccuu     uug     u         ac     -    --a  a 

>hsa-mir-212 (-50.80)   [hsa-miR-212:71-91]

cggggcaccccgcccgga   c   c   -ca  u     cu      c      ccc     
                  cag gcg cgg   cc uggcu  agacug uuacug   gggc 
                  ||| ||| |||   || |||||  |||||| ||||||   ||| c
                  guc cgc gcc   GG ACUGA  UCUGAC AAUgac   cccg 
----------ccgccccg   -   a   aCC  C     CC      -      --u     

>hsa-mir-181a-1 (-38.30)   [hsa-miR-181a:24-46] [hsa-miR-181a*:64-85]

-u    -uu   -    -   uc  u A   U      CU       A    g  au 
  gagu   uga gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu ga  u
  ||||   ||| |||| |||  || | ||| ||||||  ||||||| |||| ||  a
  cuca   acu ccaa cgg  uc C UGU AGUUGC  CAGCUAC CAaa cu  a
ac    ucu   a    u   ua  C A   U      --       -    a  aa 

>hsa-mir-214 (-67.62)   [hsa-miR-214*:30-51] [hsa-miR-214:71-92]

ggccu      acaga           u          ACA            aacau 
     ggcugg     guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           U          CAC            cacuc 

>hsa-mir-215 (-33.40)   [hsa-miR-215:27-47]

aucauuca   a      ------      a A  A    -U   U          uaua 
        gaa ugguau      acagga a UG CCUA  GAA UGACAGACaa    g
        ||| ||||||      |||||| | || ||||  ||| ||||||||||    c
        cuu aucgug      ugucuu u ac ggau  cuu acugucuguu    u
------aa   c      ucagua      a a  c    uu   u          ugag 

>hsa-mir-216a (-40.70)   [hsa-miR-216a:19-40]

----  u     u   ----------     u         CU   A        ---a   u 
    ga ggcug gag          uuggc UAAUCUCAG  GGC ACUGUGAg    ugu c
    || ||||| |||          ||||| |||||||||  ||| ||||||||    |||  
    cu ccgau cuu          aaucg auuaggguc  cug ugacacuc    aca a
agca  c     c   uaacgagaca     u         -u   g        ccua   u 

>hsa-mir-217 (-33.40)   [hsa-miR-217:35-57]

aguauaauuauuacaua    uu     c c  a  C     C          U -   aag 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAu   a
                 ||||  ||||| | || || ||||| |||||||||| | |||    
                 caaa  cuacg c uc gu acgua uccuugacua c cug   a
--------------gaa    -u     a u  c  u     a          c a   acu 

>hsa-mir-218-1 (-42.90)   [hsa-miR-218:25-45] [hsa-miR-218-1*:68-89]

-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaGGUA CACGAACUG  UUGGUAca  aaug   a
a   cu  -  a   a   c      C         CC        -a    agu 

>hsa-mir-218-2 (-46.30)   [hsa-miR-218:25-45] [hsa-miR-218-2*:67-88]

gac   --uc  u    g       uUU         CU        gguggaacga  g 
   cag    gc gcgg gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||    || |||| |||||||   |||||||||  ||||||||          ||  
   guc    cg ugcc cgaaagG   CACGAACUG  UUGGUACa          gc a
-ac   cucu  -    a       CGC         UC        --------ag  a 

>hsa-mir-219-1 (-54.50)   [hsa-miR-219-5p:21-41] [hsa-miR-219-1-3p:62-83]

-    c --------c    c       cU   U     A  G         a   uau 
 ccgc c         gggc gcggcuc  GAU GUCCA AC CAAUUCUcg guc   g
 |||| |         |||| |||||||  ||| ||||| || ||||||||| |||   g
 ggcg g         cccg cgccgaG  CUG CAGGU UG GUUGAGAgc cgg   c
g    a cuccaaacc    c       CC   -     C  A         -   ccu 

>hsa-mir-220a (-43.20)   [hsa-miR-220a:23-43]

-ga     u  ca    -    --c    C        -   -      g    a    
   cagug gg  uugu aggg   uCCA ACCGUAUC UGA CACUUU ggcg ggg 
   ||||| ||  |||| ||||   |||| |||||||| ||| |||||| |||| || c
   gucau cu  ggca uccu   gggu uggcguag acu guggaa ucgu cca 
gua     u  -a    c    caa    c        u   u      g    a    

>hsa-mir-221 (-47.20)   [hsa-miR-221*:25-46] [hsa-miR-221:65-87]

-u     ----       cugg   a    -  UG   U         AUUU    -   c 
  gaaca    uccaggu    ggc ugaA CC  GCA ACAAUGUAG    cugu guu g
  |||||    |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
  cuugu    aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
cu     acaa       ----   g    U  GU   C         ----    a   a 

>hsa-mir-222 (-54.10)   [hsa-miR-222*:31-52] [hsa-miR-222:69-89]

gcu           uaggua  c   au              -     AUC   ucuu 
   gcuggaaggug      cc uca  ggCUCAGUAGCCAG UGUAG   CUg    u
   |||||||||||      || |||  |||||||||||||| |||||   |||    c
   cgaucuucuac      gg agu  cUGGGUCAUCGGUC ACAUC   gac    g
--u           ------  u   cu              U     GAc   uaau 

>hsa-mir-223 (-47.90)   [hsa-miR-223*:26-47] [hsa-miR-223:68-89]

c    ccuccu   -     a    cC U              GAGUUg       cau 
 cugg      gca gugcc cgcu  G GUAUUUGACAAGCU      gacacuc   g
 ||||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
 gacc      cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-    ---auu   a     c    AC C              ------       aug 

>hsa-mir-224 (-36.60)   [hsa-miR-224:8-28] [hsa-miR-224*:53-75]

       CA         U   U      a u   ug  u 
gggcuuu  AGUCACUAG GGU CCGUUu g aga  au g
|||||||  ||||||||| ||| |||||| | |||  || u
cccgaaA  UCAGUGAUC CCG GGUAAA c uuu  ua g
       CA         -   U      A -   gu  c 

>cel-mir-124 (-40.00)   [cel-miR-124*:18-40] [cel-miR-124:61-81]

gu    - -uu     c      G    CUA   A       ----    au 
  ccca c   gucau ugGCAU CACC   GUG CUUUAGU    ggac  c
  |||| |   ||||| |||||| ||||   ||| |||||||    ||||   
  gggu g   cggug ACCGUA GUGG   CAC GGAAUca    ucug  u
--    a uac     c      A    -CG   -       accu    aa 

>cel-mir-228 (-44.20)   [cel-miR-228:16-38]

-----       -        A    C    C    A   A   -  aug a 
     ccuuauc ccguucgc AUGG ACUG AUGA UUC CGG cu   c u
     ||||||| |||||||| |||| |||| |||| ||| ||| ||   | a
     ggaguag ggcaggcg uacc uggc uacu agg gcc ga   g a
uaauu       u        a    a    a    -   c   a  -ca c 

>cel-mir-229 (-57.80)   [cel-miR-229:8-33] [cel-miR-229*:88-109]

       A        G U        CCA    ggaaugccccccauugauuuuuuc 
cgccggc AUGACACU G UAUCUUUU   UCGu                        c
||||||| |||||||| | ||||||||   ||||                         
gcggccG UACUGUGG C AUGGAAAG   Agca                        c
       A        G U        ---    aagguuaaaaaaggggggcuuuuc 

>cel-mir-230 (-37.90)   [cel-miR-230*:17-39] [cel-miR-230:61-83]

uug    -         A        -      U       u   aaca 
   augu aaugccguc CUUGGUCG GCGAUU AAUAUUA cag    u
   |||| ||||||||| |||||||| |||||| ||||||| |||    a
   uacg uuauggcAG GGACCAGC UGUUGA UUAUGau guu    g
uua    c         A        G      -       u   aaag 

>cel-mir-231 (-32.60)   [cel-miR-231:61-84]

ua   cc  -a          a     --   aa        ---g   cuu 
  gca  ac  gguuguucug cuguu  uca  agcuugua    uau   a
  |||  ||  |||||||||| |||||  |||  ||||||||    |||    
  ugu  ug  ucaacAAGAC GACAA  AGU  UCGAAUau    aua   a
-g   uu  gc          G     CU   GC        acaa   aau 

>cel-mir-232 (-35.60)   [cel-miR-232:61-83]

aa     auu        c        uc    au      - uuaau  u 
  guuca   uuuggauc cugcaguu  gaug  uuuauc c     uc g
  |||||   |||||||| ||||||||  ||||  |||||| |     ||  
  caagu   agaucuAG GGCGUCAA  CUAC  AAAUag g     ag a
-a     acu        U        UU    GU      u ----u  a 

>cel-mir-233 (-39.40)   [cel-miR-233:61-81]

aua    -   uu          c   c -        c    u  uaac 
   uagc auc  ucugucucgc cau c cguugcuc aaua uc    a
   |||| |||  |||||||||| ||| | |||||||| |||| ||    a
   gucg uag  agauagGGCG GUA G GUAACGAG UUau ag    c
--c    g   uc          U   C C        -    u  ugaa 

>cel-mir-234 (-25.80)   [cel-miR-234:61-81]

--caaaaaauga     c       ca    u       aaaa    uc 
            ucaaa gguauuc  gagu gauaaua    ugcg  a
            ||||| |||||||  |||| |||||||    ||||   
            aguUU CCAUAAG  CUCG UUAUUau    acgc  g
auguguaucauc     C       AG    -       -cua    cu 

>cel-mir-235 (-31.52)   [cel-miR-235:61-82]

-u  gaagaua    g        uu  cu  u     a   ----g   a 
  cc       ucag aucaggcc  gg  ga ugcaa auu     uuc c
  ||       |||| ||||||||  ||  || ||||| |||     ||| c
  gg       aguc uAGUCCGG  CC  CU ACGUU Uaa     aag g
gc  -aaugag    -        -C  CU  C     A   auuaa   u 

>cel-mir-236 (-36.50)   [cel-miR-236:61-83]

ucg     -c    -         -       uu  a    u   -  gacu 
   gugac  gaug uccagcguc uuaccug  ca uauu aga cu    a
   |||||  |||| ||||||||| |||||||  || |||| ||| ||    u
   uacug  cugu aggUCGCAG AAUGGAC  GU AUAA Ucu ga    c
---     ua    u         U       -U  C    -   a  gaaa 

>cel-mir-237 (-35.80)   [cel-miR-237:16-38]

--------------     ca   cg      C   G  UU     A      c  a 
              uucua  uug  uggUCC UGA AA  CUCGA CAGCUu aa g
              |||||  |||  |||||| ||| ||  ||||| |||||| ||  
              aagau  aac  accagg acu uu  gagcu gucgaa uu u
caaggguucacuag     --   aa      a   g  uu     -      c  g 

>cel-mir-238 (-38.40)   [cel-miR-238*:16-39] [cel-miR-238:61-83]

----u   cau              UUC     C  U        cau    c 
     cuc   ugacuguuUGGAUG   UCGGA GU CAAAGCua   ccaa a
     |||   ||||||||||||||   ||||| || ||||||||   ||||  
     gag   auugauAGACUUAC   AGCCU CA GUUUcgau   gguu a
guacc   --u              CGU     -  U        ---    a 

>cel-mir-239a (-32.69)   [cel-miR-239a:16-38]

------u    guuu     u         C  A   GU      caauuuu 
       acac    gcaau UUUGUACUA AC UAG  ACUGGa       c
       ||||    ||||| ||||||||| || |||  ||||||        
       ugug    cguua aaacgugau ug auc  ugaccu       a
aguuugu    -gcu     c         c  -   ug      auauaaa 

>cel-mir-239b (-37.50)   [cel-miR-239b:16-37] [cel-miR-239b*:58-79]

--------     aga   a          UA         A   -   a  ua 
        gcgac   ugc auuUUUGUAC  CACAAAAGU CUG guc uu  a
        |||||   ||| ||||||||||  ||||||||| ||| ||| ||   
        cguug   acg uAAAAACGUG  GUGUUUUCA Gac cgg ag  g
ucuauuuu     --a   g          UG         C   u   -  uu 

>cel-mir-240 (-23.60)   [cel-miR-240*:22-43] [cel-miR-240:61-82]

uuguua   -acuu    a  u         U A A    A     ugaa 
      gaa     uuuc aa CGAGGAUUU G G CUAG AUGcu    u
      |||     |||| || ||||||||| | | |||| |||||    u
      cuu     aaag uU GCUUCUAAA C C GGUC Uacga    g
-----a   gacau    a  C         C C C    A     ucau 

>cel-mir-241 (-33.40)   [cel-miR-241:16-36]

--c  gg      a  u        G  C    -     -   cau ca 
   gg  guguca ag UGAGGUAG UG GAGA AAUGA cgg   c  u
   ||  |||||| || |||||||| || |||| ||||| |||   |   
   uc  uacagu uc acuucguc ac cucu uuacu gcu   g  a
gca  gg      g  u        g  u    g     u   aau au 

>cel-mir-242 (-33.40)   [cel-miR-242:16-36]

---------     c c      a     U   CCU     U    -a   a 
         uggcu g gagagu UUGCG AGG   UUGCU CGAg  gag a
         ||||| | |||||| ||||| |||   ||||| ||||  |||  
         aucgg c cuuuca aacgc ucc   aacga gcuu  cuu g
aaaaaacgu     c c      a     c   uau     c    ga   c 

>cel-mir-243 (-55.70)   [cel-miR-243*:20-38] [cel-miR-243:61-83]

--ugu     cauaa             G               -  gcuc 
     ucacg     gccugaUAUCUCG UGCGAUCGUACcgua uc    a
     |||||     ||||||||||||| ||||||||||||||| ||    c
     agugc     uggaCUAUAGGGC GCGCUAGCAUGGCau ag    a
agguu     ----a             G               u  auuc 

>cel-mir-244 (-38.20)   [cel-miR-244:16-39] [cel-miR-244*:58-78]

------  c  -u        cU         UAC    UG     -   cau 
      cu ca  aucucaau  CUUUGGUUG   AAAG  GUAUG gcu   c
      || ||  ||||||||  |||||||||   ||||  ||||| |||   g
      ga gu  uagaguua  GAAAUCGAC   UUUC  CAUac cga   a
uuuucg  u  uu        AG         --U    GU     a   aua 

>cel-mir-245 (-31.80)   [cel-miR-245:61-82]

cugaauu      ugg           caa  u   u     uuu  uua 
       caaugu   agagcuauuug   gg acc aauug   ga   u
       ||||||   |||||||||||   || ||| |||||   ||    
       guuacg   uCUCGAUGAAC   CC UGG UUAac   cu   u
--cguuu      uua           CUC  C   -     --u  uag 

>cel-mir-246 (-25.32)   [cel-miR-246:61-81]

a  ug  uuauaa    u g    a   uugu           uccca 
 uc  aa      aaca c ccua ccg    cauguaauauu     g
 ||  ||      |||| | |||| |||    |||||||||||     a
 ag  uu      uugu G GGAU GGC    GUACAUUauag     g
c  gu  -caaac    C A    G   -UUU           uaaaa 

>cel-mir-247 (-37.00)   [cel-miR-247*:21-42] [cel-miR-247:61-82]

auuacca        -     U      A  U     A     cau   gc 
       gcuauuuu ccaag AGAGAA AG UUCUA UUACC   cau  a
       |||||||| ||||| |||||| || ||||| |||||   |||   
       cggugaaa gguUC UCUCUU UC GAGAU AGUgg   gua  c
---ucag        a     U      A  C     C     --u   aa 

>cel-mir-248 (-29.60)   [cel-miR-248:60-83]

uuucccg  -   -  cu     a    g     -a  -  a   u     uac 
       gc ugc aa  acggu agcg uaucc  gc cg ugu uucaa   u
       || ||| ||  ||||| |||| |||||  || || ||| |||||    
       cg acg uu  uguuA UCGC AUAGG  CG GC ACA Aaguu   g
-------  u   c  uu     C    A     CA  U  -   U     uac 

>cel-mir-249 (-40.60)   [cel-miR-249:61-83]

aua     gaa     a       a    c   uu     -   ca    c 
   cucuu   cgacu gcaacgc caaa guc  cugug cga  acau u
   |||||   ||||| ||||||| |||| |||  ||||| |||  ||||  
   gagaa   gcuga CGUUGCG GUUU CAG  GACAC guu  ugua g
aag     --a     C       A    U   --     U   --    a 

>cel-mir-250 (-38.50)   [cel-miR-250:60-80]

----a    cuuc g    c   uu      c  c     c  -   aaca 
     gggu    g acca gcc  caguug cu gugau cg cca    c
     ||||    | |||| |||  |||||| || ||||| || |||    a
     ccca    c uggu CGG  GUCAAC GA CACUA gc ggu    a
uuuua    ugcu g    A   UU      U  -     A  a   aaau 

>cel-mir-251 (-35.00)   [cel-miR-251:19-42]

-ac      ugac -     U          U  CG         gg  g 
   uuucaa    c ccuug UAAGUAGUGG GC  CUCUUAUUa  uu a
   ||||||    | ||||| |||||||||| ||  |||||||||  ||  
   aaaguu    g ggaac auucaucacu ug  gagaauaau  ga a
uuu      uaaa u     u          -  au         --  a 

>cel-mir-252 (-29.50)   [cel-miR-252:21-43]

uccaggg   --uc        A       U  U  C C      cc   agu 
       guc    uuucaguu UAAGUAG AG GC G AGGUAA  gcc   c
       |||    |||||||| ||||||| || || | ||||||  |||   u
       uag    aaaguuaa auucguc uc cg c uccauu  cgg   a
------g   uuau        a       u  -  u a      --   aaa 

>cel-mir-253 (-47.90)   [cel-miR-253*:28-48] [cel-miR-253:64-84]

-----  auu    - ga           uu    - A   C       -   AC  c 
     ga   guuc c  ucgccgcucuu  caCA C CCU ACUAACA CUG  Ca c
     ||   |||| |  |||||||||||  |||| | ||| ||||||| |||  ||  
     cu   caag g  agcggcgGGAA  GUGU G GGA UGAUUgu gau  gu g
cuuug  --g    u ac           GG    U C   -       a   ac  a 

>cel-mir-254 (-46.90)   [cel-miR-254:59-81]

--acua     -a             aa  -au      c       - au 
      ugcau  uugccgccuacag  gc   agauuu cacaaac c  u
      |||||  |||||||||||||  ||   |||||| ||||||| |  c
      acgua  agcggcGGAUGUC  CG   UCUAAA GUguuug g  g
uuuuug     ca             AG  CUU      C       u ga 

>cel-mir-255 (-29.40)   [cel-miR-255:62-83]

   ug  -ucgac       -     ---             g     c  -   au 
cag  gu      uaaauuu uggag   guaagaaaucuuu uaguu uc cgu  u
|||  ||      ||||||| |||||   ||||||||||||| ||||| || |||   
guc  ua      guuuaaa acuuc   CAUUUUUUAGAGA GUCAA ag gca  g
   cu  uauaaa       c     aGA             A     A  u   gu 

>cel-mir-256 (-30.50)   [cel-miR-256:66-86]

-------gcaag        agg   a     agacgg   aga    cc    u 
            gagugcag   cuu cuaug      uca   ggcg  uccg c
            ||||||||   ||| |||||      |||   ||||  |||| a
            cucAUGUC   GAA GAUAC      GGU   cugc  aggu c
cauuuuaaaaaa        --A   -     --GUAA   ggg    au    g 

>cel-mir-257 (-33.80)   [cel-miR-257:16-37]

auaauauuucccg       --   -    -U  -C   U  u   cu         gg 
             cuGAGUA  UCA GGAG  AC  CAG GA cgc  ucacauauu  g
             |||||||  ||| ||||  ||  ||| || |||  |||||||||  a
             gacucau  agu ccuu  ug  guc cu gcg  aguguauga  a
------------g       gu   a    cu  ac   -  -   uu         ag 

>cel-mir-258-1 (-24.60)   [cel-miR-258:6-26]

gcaauGG     A -   AA          -      uugaa uu   g 
       UUUUG G AGG  UCCUUUUaca uauuug     g  uuc c
       ||||| | |||  |||||||||| ||||||     |  |||  
       gaagc c ucc  aggaagaugu auaagc     u  aag u
--guuuu     a g   ga          c      uggug uu   c 

>cel-mir-259 (-35.30)   [cel-miR-259:19-42]

---uc        --a       A        -  U    U   A   ucuuu 
     agucauug   aacgagu AAUCUCAU CC AAUC GGU GCA     c
     ||||||||   ||||||| |||||||| || |||| ||| |||      
     ucagugau   uuguuca uuagggua gg uuag cca cgu     g
uuuuu        aaa       g        c  u    -   c   uccaa 

>cel-mir-260 (-21.05)   [cel-miR-260:69-88]

-c    aacaaaauua         aauuu  ua    g   uuugcuuuacca    g 
  guac          uugcgagag     uu  acau gcg            gguc a
  ||||          |||||||||     ||  |||| |||            ||||  
  uaug          GAUGUUCUC     AA  UGUA UGc            ucag u
uu    -gucuaacag         -----  GC    G   ----------ua    a 

>cel-mir-261 (-13.71)   [cel-miR-261:66-84]

ugauggcuuuucuggauuugu   --c     -   u    ag   c    aaaaaaaa 
                     ucc   uucac gug agaa  aaa gagc        u
                     |||   ||||| ||| ||||  ||| ||||        c
                     agg   aagug CAC UUUU  UUU UUCG        u
-----------------uuau   uau     G   -    GA   -    AUugugau 

>cel-mir-262 (-13.40)   [cel-miR-262:74-93]

gugcaaaauuguauuaaaaua   uu   ug  uu   -aaaa       ucaauuuuu 
                     aac  uau  ga  aca     aaaugua         c
                     |||  |||  ||  |||     |||||||         u
                     uug  aUA  CU  UGU     UUUGcau         u
------------ugacgaucg   uc   GU  UU   AGCUC       uuuuacuuu 

>hsa-mir-200b (-44.30)   [hsa-miR-200b*:21-42] [hsa-miR-200b:57-78]

cca  uc    ag    g c    -    UG     C      u  ag 
   gc  gggc  ccgu g CAUC UUAC  GGCAG AUUGGA gg  u
   ||  ||||  |||| | |||| ||||  ||||| |||||| ||  c
   cg  cccg  ggcg c GUAG AAUG  CCGUC UAAUcu cu  a
gca  -u    -a    g A    U    GU     A      -  gg 

>dme-mir-263a (-36.26)   [dme-miR-263a:15-38]

uaga     g   a  UA   G     GA   AU       guaauu 
    ucucg cac GU  AUG CACUG  AGA  UCACggg      u
    ||||| ||| ||  ||| |||||  |||  |||||||      u
    agagc gug ua  uac gugau  ucu  agugccc      u
aaua     -   g  uc   g     uc   --       aacaua 

>cel-mir-264 (-32.80)   [cel-miR-264:60-79]

u   gg    -cga    u   --u      a   ug    -   c  u 
 ggc  cggu    caug aca   aucacc guc  gcuu uuc cg u
 |||  ||||    |||| |||   |||||| |||  |||| ||| ||  
 ccg  gcca    GUAU UGU   UGGUGG CGG  cgaa gag gc u
a   ag    uagg    -   UGU      G   --    c   c  c 

>cel-mir-265 (-36.50)   [cel-miR-265:60-79]

    ug cu    -    -      g ug     ----c    uu 
gguu  a  uacc cccu ccuucc c  gccgc     guuu  a
||||  |  |||| |||| |||||| |  |||||     ||||  u
ccaa  u  AUGG GGGA GGAGGG G  uggug     caag  u
    gu -U    U    A      A Uu     uaguu    ua 

>cel-mir-266 (-57.30)   [cel-miR-266:23-42]

u u  a  c             A                      a 
 g cu aa uugggcaaaaguu GGCAAGACUUUGGCAAAGCuug a
 | || || ||||||||||||| ||||||||||||||||||||||  
 c ga uu aacccguuuucaa ccguuuugaaaccguuuugaac u
a c  c  a             c                      c 

>cel-mir-267 (-37.70)   [cel-miR-267:16-35]

uaaaa     --       C      U   U      a    a   u 
     guuuc  aaaacCC GUGAAG GUC GCUGCA ucua auu u
     |||||  ||||||| |||||| ||| |||||| |||| |||  
     caagg  uuuuggg uacuuc cag ugacgu agau uag u
augcc     ac       u      u   c      -    a   a 

>cel-mir-268 (-32.60)   [cel-miR-268:18-41]

g    ug cuuu       C      U         UU    -uc  a 
 gaag  g    gaagcGG AAGAAU AGAAGCAGU  GGUg   ag c
 ||||  |    ||||||| |||||| |||||||||  ||||   || a
 uuuc  u    uuucguc uuuuug ucuucguca  ucac   uc c
u    gu --uc       u      u         -c    uca  a 

>cel-mir-269 (-35.20)   [cel-miR-269:13-32]

           g       CUC   -CA        a  uau   gc 
gggcaaaaguu GGCAAGA   UGG   AAACUugg uu   gcu  g
||||||||||| |||||||   |||   |||||||| ||   |||  c
ccuguuuuuaa cuguucu   acc   uuugaacc aa   uga  c
           a       -ca   cag        c  -uu   aa 

>cel-mir-270 (-36.10)   [cel-miR-270:64-83]

guc  u  -  -       c   c    -  --    uc       gugg 
   gc ag cc ucuuuac ugc uaca ca  ccuu  ugccuac    c
   || || || ||||||| ||| |||| ||  ||||  |||||||    a
   cg uc gg aGAGGUG ACG AUGU GU  GGga  acggaug    c
cac  -  a  u       -   -    A  AC    ga       guua 

>cel-mir-271 (-36.70)   [cel-miR-271:24-43]

aauagaaaac    cc     gc    C    G         -  gac 
          gggg  cgccg  UCGC GGGU GGAAAGCAU Uc   a
          ||||  |||||  |||| |||| ||||||||| ||    
          cccu  gcggc  agcg ucua cuuuuugug ag   g
-ucacuacua    ua     uc    -    a         c  aac 

>cel-mir-272 (-36.50)   [cel-miR-272:67-84]

      - --a  u   gg     ag   gg   ag   c      aag 
cgcagg c   cg gca  uaugu  gca  cgu  gcc guaggc   u
|||||| |   || |||  |||||  |||  |||  ||| ||||||    
gcgucc g   GU UGU  GUACG  UGU  gua  cgg cgucug   g
      a aag  U   GG     GA   aa   --   a      gau 

>cel-mir-273 (-48.69)   [cel-miR-273:59-78]

   -uc     g              uu       u    uuuuuuu 
acc   guuuu ggagcagccggcau  uacgggc acac       a
|||   ||||| ||||||||||||||  ||||||| ||||        
ugg   uaaaa uuucGUCGGCUGUG  AUGCCCG Ugug       a
   cuu     g              UC       -    uaguuaa 

>dme-mir-184 (-33.70)   [dme-miR-184*:22-42] [dme-miR-184:61-82]

gguuggcc    c  u  ua         -     U  -  CCG   gcac 
        ggug au cg  cCCUUAUCA UUCUC CG CC   ugu    u
        |||| || ||  ||||||||| ||||| || ||   |||     
        ccac ua gc  GGGAAUAGU AAGAG GC GG   aca    u
cuacuuaa    -  u  uC         C     -  A  Uca   gaaa 

>dme-mir-274 (-42.90)   [dme-miR-274:19-44]

uccug              --       C  A  CU           gu      
     uguugcaguuucgU  UUUGUGA CG CA  AACGGGUAAUu  uuggc 
     ||||||||||||||  ||||||| || ||  |||||||||||  |||| c
     acgacguuaaagua  aaacacu gc gu  uugcucauuag  gaccg 
----a              uu       a  -  uu           --      

>dme-mir-275 (-46.40)   [dme-miR-275:59-81]

uguaaa    c     u         -a    ug   gg     guuuu 
      gucu cuacc ugcgcgcua  ucag  acc  ggcug     u
      |||| ||||| |||||||||  ||||  |||  |||||      
      caga ggugg GCGCGCGAU  AGUC  UGG  CUgac     u
uauaua    c     u         GA    CA   -A     auaua 

>dme-mir-92a (-38.00)   [dme-miR-92a:55-76]

-----aa  ug   uu        a     -     u   c    -ug a 
       ua  aau  cccguagg cggga aggug caa guuu   c u
       ||  |||  |||||||| ||||| ||||| ||| ||||   | u
       au  uug  gggUAUCC GCCCU UUCAC GUU Caaa   g u
acaaaua  gu   gc        G     G     -   A    uaa c 

>dme-mir-219 (-34.60)   [dme-miR-219:19-41]

---ua    -g     u   ua    U     AA           ----   a 
     auuc  auuuu agc  UGAU GUCCA  CGCAAUUCUUG    uug u
     ||||  ||||| |||  |||| |||||  |||||||||||    ||| a
     uaag  uaaag ucg  gcua cgggu  gcguugggaac    aac u
caaca    aa     c   gc    -     ca           uuau   u 

>dme-mir-276a (-38.62)   [dme-miR-276*:16-38] [dme-miR-276a:54-75]

-----------cc      uug   uC    A     AG          uucau 
             ugguuu   cca  AGCG GGUAU  AGUUCCUACG     u
             ||||||   |||  |||| |||||  ||||||||||     a
             accaga   ggu  UCGU CCAUA  UCAAGGAUgc     u
gaaccaacaaaaa      --a   UC    G     CU          ucaaa 

>dme-mir-277 (-40.30)   [dme-miR-277:59-81]

----   a g       gc  -   gu    -            c  aaa u 
    uug a guuuugg  ug cgu  cagg agugcauuugca ug   c a
    ||| | |||||||  || |||  |||| |||||||||||| ||   | u
    aac u caagacc  AC GCA  GUCU UCACGUAAAUgu ac   g c
uucu   a g       uu  A   UG    A            -  gaa u 

>dme-mir-278 (-37.20)   [dme-miR-278:57-78]

-------gu      acgg     c       u     a  a     g   ca 
         aauggu    ugcga cggauga gguuc ca cgacc ugu  u
         ||||||    ||||| ||||||| ||||| || ||||| |||  u
         uuaccg    augUU GCCUGCU UCAGG GU GCUgg gca  u
agcaacugu      --ca     U       U     -  G     -   aa 

>dme-mir-133 (-37.30)   [dme-miR-133:57-78]

---accug    -    ug             cauc  gu     -  guu 
        caac acug  uguagcugguuga    gg  cagau cu   u
        |||| ||||  |||||||||||||    ||  ||||| ||    
        guug ugac  aUGUCGACCAACU    CC  GUUua ga   u
caacagua    g    cg             -UCC  UG     c  acu 

>dme-mir-279 (-36.40)   [dme-miR-279:67-88]

ggaauucau         u          g     c  uguu     uug   u 
         acuacuguu uuagugggug ggguc ag    ucaca   auu u
         ||||||||| |||||||||| ||||| ||    |||||   ||| c
         ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   uga u
-------cu         u          A     A  ----     uua   u 

>dme-mir-33 (-33.20)   [dme-miR-33:24-44]

cucuuccucug      a    a  -G       U   C C        ucc a 
           gagaug cacg AG  UGCAUUG AGU G AUUGucug   c a
           |||||| |||| ||  ||||||| ||| | ||||||||   |  
           cuuuac gugu uc  acgugac uca c uaacggac   g u
---------ca      -    c  ga       u   a a        uuc u 

>dme-mir-280 (-25.60)   [dme-miR-280:10-36]

---------u      --ua     U   G                --A      
          ggcuuu    UGUAU UAC UUGCAUAUGAAAUGAU   uuuau 
          ||||||    ||||| ||| ||||||||||||||||   |||| a
          cuggag    acgua aug gacguauauuuuauua   aaaug 
gucacaccuc      cuga     u   -                gac      

>dme-mir-281-1 (-32.51)   [dme-miR-281-1*:15-36] [dme-miR-281:58-80]

      ag  a           -UG     C      ccagaaac 
cgaaua  ug auaAAGAGAGC   UCCGU GACAGU        u
||||||  || |||||||||||   ||||| ||||||        a
gcuuau  au UGUUUCUCUCG   AGGUA CUGUca        u
      -a  a           UUA     -      cuauaauu 

>dme-mir-282 (-42.30)   [dme-miR-282:13-40]

a    -    -cuaA           AC      U      Ugcau   a 
 guuu ccuu     AUCUAGCCUCU  UAGGCU UGUCUG     ucg a
 |||| ||||     |||||||||||  |||||| ||||||     ||| a
 caag ggaa     uggauuggaga  auccga acagac     agc g
a    c    ccaug           au      u      ----u   c 

>dme-mir-283 (-29.55)   [dme-miR-283:20-40]

cucacac     uc      AA           U         agcuaagccu 
       gauuc  aaaggU  AUAUCAGCUGG AAUUCUggg          a
       |||||  ||||||  ||||||||||| |||||||||           
       uuaag  uuuuca  uaugguugacu uuaaggcuc          a
-------     uu      gc           -         acaaaguaua 

>dme-mir-284 (-41.70)   [dme-miR-284:64-92]

----         c              a   uguagccugugagggcaag 
    guugcaguu cuggaauuaaguug cug                   g
    ||||||||| |||||||||||||| |||                   c
    cggcGUUAA GACCUUAGUUCAAC GAC                   u
agcc         C              -   UGAAGUccucguaauaagu 

>dme-mir-281-2 (-32.60)   [dme-miR-281-2*:15-36] [dme-miR-281:60-82]

     u  gaa ug        -UA     C      ---ca    aa 
cgaau gu   a  AAGAGAGC   UCCGU GACAGU     aguu  g
||||| ||   |  ||||||||   ||||| ||||||     ||||   
gcuua ca   U  UUCUCUCG   AGGUA CUGUca     uuag  a
     -  aua GU        UUA     -      uaaug    cc 

>dme-mir-34 (-37.50)   [dme-miR-34:17-40]

aauug   a  -   uu        U  U   C        --ua c    ua 
     gcu ug cgc  UGGCAGUG GG UAG UGGUUGUG    g caau  u
     ||| || |||  |||||||| || ||| ||||||||    | ||||  u
     cga ac gcg  gccgucac uc auc accgacac    c guug  g
-----   -  a   cc        u  u   -        uuaa a    cc 

>dme-mir-124 (-31.30)   [dme-miR-124:57-79]

---ucauuuggua     uu   c      c      ag    a    uau 
             cguuu  cuc ugguau cacugu  gccu uaug   u
             |||||  ||| |||||| ||||||  |||| ||||   u
             gcaag  gaG ACCGUA GUGGCG  CGGA AUac   c
uaaacaucuugac     -c   A      A      CA    -    cac 

>dme-mir-79 (-36.10)   [dme-miR-79:60-81]

u  ag   -acuu    u        cgc       g     --   au 
 ga  cug     gcca ugcuuugg   uuuagcu uauga  uag  u
 ||  |||     |||| ||||||||   ||||||| |||||  |||  u
 cu  gac     cggu ACGAAACC   AGAUCGA AUacu  auc  a
a  -g   gucuu    U        AUU       A     uc   aa 

>dme-mir-276b (-39.50)   [dme-miR-276*:23-45] [dme-miR-276b:62-83]

aaaac   -      uuua   uC    A     A           uuc  au 
     cga agucuu    cca  AGCG GGUAU GAGUUCCUACG   cu  a
     ||| ||||||    |||  |||| ||||| |||||||||||   ||   
     gcu ucagga    ggu  UCGU CCAUA UUCAAGGAUgc   ga  u
--cca   g      ----   UC    G     A           --u  cu 

>dme-mir-210 (-38.12)   [dme-miR-210:53-73]

------------aaa   -g     ugc        gc   -         uuaga 
               ggu  cuuau   agcugcug  cac ugcacaaga     c
               |||  |||||   ||||||||  ||| |||||||||     u
               ccg  gaaug   UCGGCGAC  GUG GCGUGUUcu     u
ccgacaacgaagaua   ga     uuA        -A   U         cagaa 

>dme-mir-285 (-34.54)   [dme-miR-285:64-85]

---  ga       -a     ga    u      a    --uaucag   aa 
   uc  aucgaag  acuga  ucga uggugc uaga        gag  c
   ||  |||||||  |||||  |||| |||||| ||||        |||   
   ag  uaguuuu  UGACU  AGCU ACCACG AUcu        cuc  c
caa  aa       CG     AA    U      -    caauuuaa   ac 

>dme-mir-100 (-27.10)   [dme-miR-100:12-33]

-------------------c    a     AA       AU   AA      - u uuu 
                    cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
                    |||| |||||  |||||||  |||  |||||| | |    
                    guaa ugucu  ggguauu  ggc  gaacau g c   a
acgguuuuuggucaacaaac    c     ga       ac   ca      u u uau 

>dme-mir-92b (-33.50)   [dme-miR-92b:60-81]

---uaaaa  u   cu a         u c c     uu      --ug au 
        cg cac  g uguaggccg g c agugc  auuugu    c  u
        || |||  | ||||||||| | | |||||  ||||||    |   
        gc gug  u aCGUCCGGC C G UCACG  UAAaca    g  u
cagcugac  u   ag a         C U A     -U      uaaa cu 

>dme-mir-286 (-27.30)   [dme-miR-286:65-87]

---         aaug    a   -    a     ucuuuuucaaagaaag 
   uuaaaauug    gcga ugu cggu ugguc                g
   |||||||||    |||| ||| |||| |||||                 
   aauuuuaau    UGCU ACA GCCA AUCAG                u
uaa         aUCG    C   A    G     Ugaagcgaauuagcuu 

>dme-mir-287 (-23.80)   [dme-miR-287:65-85]

ggacgccggggauguaugggugug  g    -  -    --   -gc           a 
                        ua gguc ug aaau  uuu   acacauuuaca u
                        || |||| || ||||  |||   ||||||||||| a
                        gu ucag AC UUUG  AAA   UGUGUaaaugu a
-----------------------a  g    C  G    CU   AGU           u 

>dme-mir-87 (-40.90)   [dme-miR-87:61-81]

-----          auu        -u  c     g     ------cu   a 
     aacacauuuc   cgcgccug  au uugcu aaccg        gcc u
     ||||||||||   ||||||||  || ||||| |||||        ||| u
     uuguguaaag   GUGUGGAC  UA AACGA UUggc        cgg a
acgau          agu        UU  A     G     cuagcaac   u 

>dme-mir-263b (-37.70)   [dme-miR-263b:16-36]

uu    -ac       C        G G     U     -u   c 
  gcug   uuugagu UUGGCACU G AGAAU CACag  uga u
  ||||   ||||||| |||||||| | ||||| |||||  ||| u
  cggc   aaauuca aaccgugg c ucuug guguc  auu u
uu    caa       a        g g     -     uu   a 

>dme-mir-288 (-33.12)   [dme-miR-288:66-88]

     a      aauuagcg   ca      --c       auaauuaa    g 
cggcc ugucgu        gag  cggcau   gccggcg        ugac g
||||| ||||||        |||  ||||||   |||||||        ||||  
gccgg acaGUA        CUU  GCUGUA   Ugguugc        acug u
     c      ---CUUUA   UA      CUU       --------    g 

>dme-mir-289 (-27.00)   [dme-miR-289:16-41]

-gag     a  -aa      UA         --A    G  ACU      c 
    uuuac gu   aaUAAA  UUUAAGUGG   GCCU CG   ucaguc c
    ||||| ||   ||||||  |||||||||   |||| ||   |||||| u
    aaaug ca   uuguuu  gaguucacu   uggg gu   agucag c
caga     -  cgg      gc         gaa    -  --c      u 

>dme-bantam (-25.50)   [dme-bantam:52-74]

au     uac    c          uu      g   -  uu 
  uugac   gaaa cgguuuucga  ugguuu acu gu  u
  |||||   |||| ||||||||||  |||||| ||| ||  u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga ca  c
--     ---    A          UU      G   a  ua 

>mmu-mir-290 (-35.60)   [mmu-miR-290-5p:14-35] [mmu-miR-290-3p:49-72]

    u  u    uA  -C      U  G          uuu 
cuca cu gcgg  CU  AAACUA GG GGCACUUUuu   u
|||| || ||||  ||  |||||| || ||||||||||   u
gagu gg cgcC  GA  UUUGAU CC CCGUGAAAaa   c
    u  c    CC  AU      -  G          uuu 

>mmu-mir-291a (-44.30)   [mmu-miR-291a-5p:14-35] [mmu-miR-291a-3p:50-71]

         c   -  U            C  C    gagc 
ccuauguag ggc CA CAAAGUGGAGGC CU UCUu    c
||||||||| ||| || |||||||||||| || ||||     
ggguacguc cCG GU GUUUCACCUUCG GA Agag    u
         a   U  -            U  A    uaag 

>mmu-mir-292 (-41.10)   [mmu-miR-292-5p:12-33] [mmu-miR-292-3p:50-73]

     u           --A    G   U    UGga     a 
cagcc gugauACUCAA   CUGG GGC CUUU    uuuuc u
||||| |||||||||||   |||| ||| ||||    |||||  
guugg cacUGUGAGUU   GACC CCG GAAA    agaag c
     c           UUG    G   U    ----     g 

>mmu-mir-293 (-31.30)   [mmu-miR-293*:14-35] [mmu-miR-293:48-69]

u      u  gg    -      G    A      Guuc 
 ucaauc gu  uACU CAAACU UGUG CAUUUU    u
 |||||| ||  |||| |||||| |||| ||||||    u
 aguuag cg  GUGA GUUUGA ACGC GUGAag    u
g      c  uU    U      G    C      aaug 

>mmu-mir-294 (-33.30)   [mmu-miR-294*:15-36] [mmu-miR-294:51-72]

u       a  c    U     U      C  A   aa   u 
 uccauau gc auAC CAAAA GGAGGC CU UCU  gcu u
 ||||||| || |||| ||||| |||||| || |||  |||  
 aggugua cg UGUG GUUUU CCUUCG GA Agg  uga u
g       c  u    U     C      U  A   --   a 

>mmu-mir-295 (-30.70)   [mmu-miR-295*:7-28] [mmu-miR-295:43-65]

  u          U    -     AC     gac 
gg gagACUCAAA GUGG GGCAC  UUCug   u
|| |||||||||| |||| |||||  |||||   g
cc cUCUGAGUUU CAUC UCGUG  AAgau   u
  u          U    A     -A     aca 

>mmu-mir-296 (-43.70)   [mmu-miR-296-5p:13-33] [mmu-miR-296-3p:47-68]

    -     u        C  C         G   -u c 
gggc cuuuc ggAGGGCC CC CUCAAUCCU Uug  g u
|||| ||||| |||||||| || ||||||||| |||  |  
ccug ggaag CCUCUCGG GG GGGUUGGGA Gac  c c
    u     u        A  U         -   uu g 

>mmu-mir-297a-1 (-35.90)   [mmu-miR-297a:15-36]

             u       UG    -        Ug 
auauguauguaug AUGUAUG  UGCA UGUGCAUG  c
||||||||||||| |||||||  |||| ||||||||   
uguacauacguau uauauau  acgu auacguau  a
             -       gu    u        gu 

>mmu-mir-297a-2 (-36.40)   [mmu-miR-297a:36-57]

u                 ug u    ug  u 
 guaugugcaugcauaug  c caug  ug g
 |||||||||||||||||  | ||||  ||  
 uauauaUGUACGUGUAC  G GUAU  Ac u
g                 GU U    GU  a 

>mmu-mir-298 (-43.00)   [mmu-miR-298:11-33]

   gg   uu   A   -       -         uug    u 
cca  ccu  GGC GAG GAGGGCU GUUCUUCCC   aguu u
|||  |||  ||| ||| ||||||| |||||||||   ||||  
ggu  gga  ucg cuc cuuccga caaggaggg   ucag a
   ga   -u   a   u       u         ---    u 

>mmu-mir-299 (-42.30)   [mmu-miR-299*:7-28] [mmu-miR-299:39-60]

     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucUU GCCAAAUGGCAGGGUGUAUgua  a
     C                      ug 

>mmu-mir-300 (-35.50)   [mmu-miR-300*:6-27] [mmu-miR-300:51-72]

   a           G  AU             gc   a 
gcu cUUGAAGAGAG UU  CCUUUGUguguuu  uuu c
||| ||||||||||| ||  |||||||||||||  |||  
cga gagCUUCUCUC AA  GGGAACGUAUaag  aag g
   g           G  -C             ua   c 

>mmu-mir-301a (-39.40)   [mmu-miR-301a:51-73]

      aa   c    c    ---u          ----a       
ccugcu  cgg ugcu ugac    uuauugcacu     cuguac 
||||||  ||| |||| ||||    ||||||||||     ||||| u
ggacga  gcc aCGA ACUG    GAUAACGUGA     gacauu 
      gc   u    A    UUAU          Cgagc       

>mmu-mir-302a (-30.90)   [mmu-miR-302a*:6-27] [mmu-miR-302a:44-66]

   c    U        UU           aga 
cca cACU AAACGUGG  GUACUUGCuuu   c
||| |||| ||||||||  |||||||||||   c
ggu GUGG UUUGUACC  CGUGAAUgaaa   u
   A    U        UU           gaa 

>mmu-mir-34c (-31.60)   [mmu-miR-34c:13-35] [mmu-miR-34c*:46-67]

     ag     A   A    A     C      C  a 
agucu  uuacu GGC GUGU GUUAG UGAUUG ua u
|||||  ||||| ||| |||| ||||| |||||| ||  
ucaga  aauGG CCG CACA CAAUC ACUAAc au a
     aa     A   A    C     -      c  g 

>mmu-mir-34b (-34.10)   [mmu-miR-34b-5p:14-36] [mmu-miR-34b-3p:51-72]

     cg    -guA       UAA    C       -   g 
gugcu  guuu    GGCAGUG   UUAG UGAUUGU agu c
|||||  ||||    |||||||   |||| ||||||| ||| g
cacgg  caaa    CCGUCAC   AAUC ACUAAca ucg g
     aa    aCUA       CUC    -       g   u 

>mmu-let-7d (-49.82)   [mmu-let-7d:16-37] [mmu-let-7d*:70-91]

      uu       A              C      -------uua         
aauggg  ccuagga GAGGUAGUAGGUUG AUAGUU          gggcagag 
||||||  ||||||| |||||||||||||| ||||||          ||||||| a
uuauuc  ggauUCU UUCCGUCGUCCAGC UAUCaa          cccguuuu 
      cg       -              A      uugaggaaca         

>mmu-mir-106a (-22.70)   [mmu-miR-106a:5-27]

    -CA       AA  G     -GU       
augu   AAGUGCU  CA UGCAG   AGcuuu 
||||   |||||||  || |||||   ||||| u
uaca   uucacga  gu acguc   uugagu 
    uuc       cc  g     auc       

>mmu-mir-106b (-43.60)   [mmu-miR-106b:12-32] [mmu-miR-106b*:52-73]

        ga -UA       G       AGAUa    uc u 
ccugcugg  c   AAGUGCU ACAGUGC     gugg  c c
||||||||  |   ||||||| |||||||     ||||  | u
ggacgacc  G   UUCAUGG UGUCACG     Cauc  g c
        uC UCG       G       ----C    gu u 

>mmu-mir-130b (-32.10)   [mmu-miR-130b*:13-34] [mmu-miR-130b:51-72]

      u    cA       CC         A  guggg  u 
ggcuug ugga  CUCUUUC  UGUUGCACU CU     cc c
|||||| ||||  |||||||  ||||||||| ||     ||  
ccgggc gucU  GGGAAAG  GUAACGUGA ga     gg u
      u    AC       UA         C  ----a  g 

>dme-mir-303 (-26.90)   [dme-miR-303:7-29]

        UA     C C             aau 
ucuuggUU  GGUUU A AGGAAACUGGUuu   a
||||||||  ||||| | |||||||||||||    
agaacuaa  cuaaa u uccuuugaucaaa   a
        uc     a c             agc 

>dme-mir-31b (-36.60)   [dme-miR-31b:14-35]

    -     aau     A     UC  A       agagcacagcggaucgaacauuuuauc 
caaa uaaug   uUGGC AGAUG  GG AUAGCUG                           g
|||| |||||   ||||| |||||  || |||||||                           u
guuu auuac   aacug ucuac  cc uaucggc                           c
    c     guu     a     -u  g       gaaaaguuuuuauuaguguaaaaaagc 

>dme-mir-304 (-32.90)   [dme-miR-304:12-34]

    ca    a       AAU       U     c -   u  g 
gcag  uuga UAAUCUC   UUGUAAA GUGAG g guu aa c
||||  |||| |||||||   ||||||| ||||| | ||| ||  
cguc  agcu guuagag   aacguuu cacuc c cag uu c
    ag    c       guu       -     a g   u  a 

>dme-mir-305 (-24.50)   [dme-miR-305:8-30]

     cu U         U  G     CU  u  guc 
caugu  A UGUACUUCA CA GUGCU  Gg gu   u
|||||  | ||||||||| || |||||  || ||    
guaua  u acaugaagu gu cacgg  cc ca   c
     ac c         u  a     --  -  aug 

>dme-mir-9c (-27.30)   [dme-miR-9c:13-34]

    uu    uuU         UCU    G     u  uuc   c 
auuu  gcug   CUUUGGUAU   AGCU UAGAu gu   acg a
||||  ||||   |||||||||   |||| ||||| ||   ||| c
uaaa  cgac   gaaaccaua   ucga aucua ua   ugu a
    uu    cuc         uuu    a     c  -ua   u 

>dme-mir-306 (-43.50)   [dme-miR-306:15-36] [dme-miR-306*:52-73]

-g      c au   U       UU           --   - u 
  uccacu g  ggc CAGGUAC  AGUGACUCUCA  Aug c u
  |||||| |  ||| |||||||  |||||||||||  ||| |  
  ggguga c  uCG GUCCGUG  UCACUGGGGGu  uac g u
ca      - cg   U       UC           uu   a u 

>dme-mir-9b (-30.80)   [dme-miR-9b:15-37]

u   --u        cUC         UUU    G     u  uua 
 gca   auuauuug   UUUGGUGAU   AGCU UAUGg gu   u
 |||   ||||||||   |||||||||   |||| ||||| ||    
 cgu   ugguaaac   aaaccauua   ucga auacc ua   g
a   cuu        caa         -uu    g     u  uau 

>dme-let-7 (-30.44)   [dme-let-7:11-31]

  u      uU   G     G           guaauu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa      a
|| ||||||  ||| ||||| |||||||||||       
ag ucguuu  uuc aucgu uaacauaucau      c
  u      cu   g     g           acuaca 

>dme-mir-125 (-31.70)   [dme-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dme-mir-307 (-40.10)   [dme-miR-307:56-75]

u        -   a         ccu  g       -u    uc 
 gucuugcu uug cucacucaa   gg ugugaug  uauu  g
 |||||||| ||| |||||||||   || |||||||  ||||  a
 caggacga agc GAGUGAGUU   CC ACACUac  augg  u
a        u   -         CCU  A       cu    ua 

>dme-mir-308 (-24.70)   [dme-miR-308:42-63]

           u       u    uu c u 
cucgcaguaua uuuugug uuug  u g u
||||||||||| ||||||| ||||  | | u
GAGUGUCAUAU AGGACAC AAac  a c u
           U       U    cu a g 

>dme-mir-31a (-40.30)   [dme-miR-31a:14-36]

        ua       A     U         UGAcguugaaaa 
uccguugg  aauUGGC AGAUG CGGCAUAGC            g
||||||||  ||||||| ||||| |||||||||            c
agguaacu  uugacug ucuac gucguaucg            g
        ug       a     -         cgagaaguuuua 

>dme-mir-309 (-20.10)   [dme-miR-309:44-65]

      c       c   uu    u   c aau 
auuaua gacaaac uug  cggu uug c   u
|||||| ||||||| |||  |||| ||| |   u
uaauAU CUGUUUG AAU  GUCA Gac g   c
      C       A   GG    C   c aac 

>dme-mir-310 (-36.40)   [dme-miR-310:54-75]

     -aa       c   g    uc     u       u   u 
aacau   acauuug agg cggg  gugug cagugua uua a
|||||   ||||||| ||| ||||  ||||| ||||||| ||| u
uugua   uguaaaU UCC GCCC  CACAC GUUAUau gau c
     acc       U   G    UU     -       c   u 

>dme-mir-311 (-19.90)   [dme-miR-311:52-73]

   a   cau       -a    au   g  u     -   au 
ucu gau   uuuucgg  cggu  aug gu aauau uuc  u
||| |||   |||||||  ||||  ||| || ||||| |||  u
aga cua   aaaAGUC  GCCA  UAC CG UUAUa aag  g
   a   --u       CG    CU   A  -     u   cu 

>dme-mir-312 (-20.00)   [dme-miR-312:43-64]

    u   u    a    g     u   cauu 
gauu ggu cguc caag gcaau cug    u
|||| ||| |||| |||| ||||| |||    u
uuAG CCG GCAG GUUC CGUUA gau    u
    U   -    A    A     U   caau 

>dme-mir-313 (-21.60)   [dme-miR-313:46-67]

      -u    c   u  gg        ----   u 
auuuuc  gcug gga gg  gcaguacu    guu u
||||||  |||| ||| ||  ||||||||    ||| u
uaaaAG  CGAC CUU UC  CGUUAUga    caa u
      CC    A   U  -A        guua   u 

>dme-mir-314 (-29.80)   [dme-miR-314:70-90]

u  u       g     u    cu    uaguu    ---a   c   ca 
 cg aacuugu uggcu cgaa  uacc     gagg    aaa ucc  u
 || ||||||| ||||| ||||  ||||     ||||    ||| |||   
 GC UUGAAUA ACCGA GCUU  AUgg     cucc    uuu agg  g
G  -       -     -    --    ----u    auug   u   cu 

>dme-mir-315 (-34.80)   [dme-miR-315:12-33]

       auaa   UG          A       cuc    u 
cacuuau    UUU  AUUGUUGCUC GAAAGCc   auug u
|||||||    |||  |||||||||| |||||||   |||| u
gugaaua    aaa  uaauaacgag cuuucgg   ugac a
       gacc   gu          -       --u    c 

>dme-mir-316 (-29.00)   [dme-miR-316:16-37]

      -    c   u           G   -A   G    ucaa 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uua gcggaaaaagg gaa  gac gcaa    u
      u    u   u           -   ag   a    cacc 

>dme-mir-317 (-38.60)   [dme-miR-317:56-79]

    --a  u         aua    --     c      u aa  a 
augc   ac gccauuggg   cacc  cugug ucgcuu g  ug a
||||   || |||||||||   ||||  ||||| |||||| |  || a
uacg   ug cggUGACCU   GUGG  GACAC AGUgaa c  ac u
    guu  c         AUG    UC     A      - ga  g 

>dme-mir-318 (-24.90)   [dme-miR-318:43-64]

u          c   c        uu   caca 
 uuaugggaua aca aguucagu  ugu    c
 |||||||||| ||| ||||||||  |||     
 aguACUCUAU UGU UCGGGUCA  acg    u
g          U   U        CU   aacu 

>dme-mir-2c (-28.60)   [dme-miR-2c:63-85]

    au    c  u       -      aag     aagaaagauauuucu 
ucgu  cuua uu caauguc aucaaa   ggcug               g
||||  |||| || ||||||| ||||||   |||||                
agcg  gagu aa guuaCGG UAGUUU   CCGAC               c
    ac    -  c       G      CGA     ACUAUgcuaaguuua 

>dme-mir-iab-4 (-25.20)   [dme-miR-iab-4-5p:7-28] [dme-miR-iab-4-3p:41-64]

    -aa            U    C   Ag  u 
ucgu   ACGUAUACUGAA GUAU CUG  ug a
||||   |||||||||||| |||| |||  || u
agca   UGCAUAUGACUU CAUA GGC  au c
    CAA            C    U   cu  c 

>hsa-let-7g (-40.50)   [hsa-let-7g:5-26] [hsa-let-7g*:62-82]

a   U        A            ugagg    -a  a    a 
 ggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
 ||| |||||||| ||||||||||||     ||||  || ||||  
 cCG UUCCGUCA CGGACAUGUCaa     uaga  ac augg c
a   -        C            -----    gg  -    c 

>hsa-let-7i (-39.60)   [hsa-let-7i:6-27] [hsa-let-7i*:62-83]

c    U                 U   --------  u     ugu 
 uggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
 |||| ||||||||||||||||| |||        || |||||   a
 aUCG UUCCGUCAUCGAACGCG Caa        uc gcccg   c
-    -                 U   uagaggug  -     uua 

>hsa-mir-1-2 (-35.64)   [hsa-miR-1:53-74]

a      c                     ac     ugaaca 
 ccuacu agaguacauacuucuuuaugu  ccaua      u
 |||||| |||||||||||||||||||||  |||||       
 ggaugg uuuUAUGUAUGAAGAAAUGUA  GGUau      a
c      u                     -A     cguaac 

>hsa-mir-15b (-32.70)   [hsa-miR-15b:20-41] [hsa-miR-15b*:58-79]

u    --g       gua   U       C  C      UA   g  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gAU UCGUCGU UA UACUAA  gua ga  u
u    aaa       aaa   C       U  U      GC   -  ac 

>hsa-mir-23b (-36.04)   [hsa-miR-23b*:20-41] [hsa-miR-23b:58-78]

c     u c  -   c   u   --          -  C      gugacu 
 ucagg g uc ugg ugc UGG  GUUCCUGGCA UG UGAUUU      u
 ||||| | || ||| ||| |||  |||||||||| || ||||||       
 gguuc c ag acc acg aCC  UAGGGACCGU AC ACUAaa      a
c     - -  c   a   c   AU          U  -      auuaga 

>hsa-mir-27b (-50.40)   [hsa-miR-27b*:19-40] [hsa-miR-27b:61-81]

-    -    aaca                  AUUG        ugau     
 accu cucu    aggugcAGAGCUUAGCUG    GUGAACag    uggu 
 |||| ||||    ||||||||||||||||||    ||||||||    ||| u
 ugga gaga    uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
g    a    --ag                  --GA        --uc     

>hsa-mir-30b (-37.60)   [hsa-miR-30b:17-38] [hsa-miR-30b*:55-76]

a     uu      caU          U  -A        uaaua 
 ccaag  ucaguu   GUAAACAUCC AC  CUCAGCUg     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   CAUUUGUAGG UG  GGGUCggu     a
a     --      CUU          -  GA        uaggu 

>hsa-mir-122 (-46.60)   [hsa-miR-122:15-36] [hsa-miR-122*:51-72]

c        -      GG       C           --u  c 
 cuuagcag agcugU  AGUGUGA AAUGGUGUUUG   gu u
 |||||||| ||||||  ||||||| |||||||||||   ||  
 ggaucguc ucgAUA  UCACACU UUACCGCAAac   ca a
c        a      AA       A           uau  a 

>hsa-mir-124-1 (-35.92)   [hsa-miR-124*:14-35] [hsa-miR-124:53-72]

a      uc   cC        A   GA        uaaau 
 ggccuc  ucu  GUGUUCAC GCG  CCUUGAUu     g
 ||||||  |||  |||||||| |||  ||||||||     u
 ucgggg  aga  CGUAAGUG CGC  GGAAUuaa     c
g      ua   aC        G   AC        cauac 

>hsa-mir-124-2 (-51.20)   [hsa-miR-124*:25-46] [hsa-miR-124:62-81]

a     au   ----            cC        A   GA        uaau 
 ucaag  uag    aggcucugcucu  GUGUUCAC GCG  CCUUGAUu    g
 |||||  |||    ||||||||||||  |||||||| |||  ||||||||    u
 aguuc  guc    uccgaggcgaga  CGUAAGUG CGC  GGAAUuaa    c
a     ac   ggca            aC        G   AC        caua 

>hsa-mir-124-3 (-40.30)   [hsa-miR-124*:15-36] [hsa-miR-124:53-72]

u    -   c    - C        A   GA        uaaug 
 gagg gcc cucu g GUGUUCAC GCG  CCUUGAUu     u
 |||| ||| |||| | |||||||| |||  ||||||||      
 cucc cgg gaga C CGUAAGUG CGC  GGAAUuaa     c
c    g   a    a -        G   AC        cauau 

>hsa-mir-125b-1 (-43.40)   [hsa-miR-125b:15-36] [hsa-miR-125b-1*:55-76]

u    uc   u   UC  UG   C           Au     c 
 gcgc  cuc cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  ||| |||  ||  ||| |||||||||||  ||||| g
 cgug  gag gUC  GG  UCU GGAUUGGGCAc  uaaau u
u    cu   c   GA  GU   C           -c     u 

>hsa-mir-128-1 (-35.90)   [hsa-miR-128:50-70]

u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 

>hsa-mir-130a (-42.60)   [hsa-miR-130a*:21-42] [hsa-miR-130a:55-76]

u     -       a        C      UG  A   UCU  a 
 gcugc uggccag gcucuuUU ACAUUG  CU CUG   GC c
 ||||| ||||||| |||||||| ||||||  || |||   ||  
 ugaug gccgguU CGGGAAAA UGUAAC  GA gau   ug c
g     u       A        U      GU  C   cac  u 

>hsa-mir-132 (-48.40)   [hsa-miR-132*:23-44] [hsa-miR-132:59-80]

c   cccc    -  c a    a         UUC          --gu g 
 cgc    gcgu cu c gggc ACCGUGGCU   GAUUGUUACU    g g
 |||    |||| || | |||| |||||||||   ||||||||||    |  
 gcg    cgca ga g cccG UGGUACCGA   CUGACAAUgg    c a
c   cacc    c  c c    C         CAU          aggu a 

>hsa-mir-133a-1 (-40.50)   [hsa-miR-133a:53-74]

a      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 

>hsa-mir-133a-2 (-47.50)   [hsa-miR-133a:59-80]

g  a    --     uuu    g       aa  u  a        g cug 
 gg gcca  aaugc   gcua agcuggu  aa gg accaaauc a   u
 || ||||  |||||   |||| |||||||  || || |||||||| |    
 cc cggu  uuacg   cgau UCGACCA  UU CC UGGUUUag u   c
g  g    ag     ugu    G       AC  C  C        g aac 

>hsa-mir-135a-1 (-44.72)   [hsa-miR-135a:17-39] [hsa-miR-135a*:56-77]

a g         u u          UU            uucua 
 g ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
 | ||||||||| | ||||||||||  ||||||||||||     u
 c ggggcggca G GGUGCCGAGG  UAGGGAUAUacu     g
a a         c C          -U            cacuc 

>hsa-mir-135a-2 (-35.10)   [hsa-miR-135a:23-45]

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 

>hsa-mir-137 (-49.10)   [hsa-miR-137:59-81]

g u  u   --           ug   g           ug a     -  g 
 g cc cug  acucucuucgg  acg guauucuuggg  g uaaua cg a
 | || |||  |||||||||||  ||| |||||||||||  | ||||| || u
 c gg gac  ugagaggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
a -  c   ca           GA   G           GU -     u  a 

>hsa-mir-138-2 (-36.00)   [hsa-miR-138:10-32] [hsa-miR-138-2*:57-78]

c u   u  AG             UCA     -ac   c  cg 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg UG  GACCACAGCACUU   UCGgc   uuc uc  a
a u   U  -G             -UA     cca   -  cu 

>hsa-mir-140 (-55.00)   [hsa-miR-140-5p:23-44] [hsa-miR-140-3p:62-82]

u       ucucu        -  A             A       uu   uc 
 gugucuc     guguccug cC GUGGUUUUACCCU UGGUAGg  acg  a
 |||||||     |||||||| || ||||||||||||| |||||||  |||   
 cacgggg     cauaggac GG CACCAAGAUGGGA ACCAUcu  ugu  u
c       ----c        a  -             C       --   cg 

>hsa-mir-141 (-48.90)   [hsa-miR-141*:17-38] [hsa-miR-141:59-80]

c    g    u   -u       --    U        -   ugg  ua 
 ggcc gccc ggg  cCAUCUU  CCAG ACAGUGUU GGA   uc  a
 |||| |||| |||  |||||||  |||| |||||||| |||   ||  u
 uugg uggg ccc  GGUAGAA  GGUC UGUCACAA ccu   ag  u
c    g    -   uc       AU    -        U   cga  ug 

>hsa-mir-142 (-44.70)   [hsa-miR-142-5p:16-36] [hsa-miR-142-3p:52-74]

g        g   c           A         Uaa ag a 
 acagugca uca cCAUAAAGUAG AAGCACUAC   c  c c
 |||||||| ||| ||||||||||| |||||||||   |  |  
 ugucaugu agu GGUAUUUCAUC UUUGUGAUG   g  g u
g        g   A           C         -Ug ga g 

>hsa-mir-143 (-51.90)   [hsa-miR-143*:27-48] [hsa-miR-143:61-81]

-gc    c  ccug    c ag      G         G      U  -  ag 
   gcag gc    ucuc c  ccugaG UGCAGUGCU CAUCUC GG Uc  u
   |||| ||    |||| |  |||||| ||||||||| |||||| || ||   
   cguc ug    agag g  ggaCUC AUGUCACGA GUAGAG cu ag  u
cga    u  uuga    a aa      G         A      U  g  gg 

>hsa-mir-144 (-44.40)   [hsa-miR-144*:15-36] [hsa-miR-144:52-71]

-u   -    u      G        A         -A    gc 
  ggg gccc ggcugG AUAUCAUC UAUACUGUA  Guuu  g
  ||| |||| |||||| |||||||| |||||||||  ||||   
  ccc cggg cugaUC UGUAGUAG AUAUGACAU  caga  a
cc   a    c      A        -         ca    gu 

>hsa-mir-145 (-41.62)   [hsa-miR-145:16-38] [hsa-miR-145*:54-75]

c   u  u     c  UC    U  C            uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu UC  GUCA AA GGUCCUUAGGgg     u
u   u  u     -  UU    U  A            uagaa 

>hsa-mir-152 (-48.20)   [hsa-miR-152:54-74]

u    cc  c              g  a    cc    cgg   c 
 gucc  cc ggcccagguucugu au cacu  gacu   gcu u
 ||||  || |||||||||||||| || ||||  ||||   |||  
 cagg  gg ccgGGUUCAAGACA UA GUGA  CUga   cga g
c    aa  c              G  C    --    ---   g 

>hsa-mir-153-1 (-48.10)   [hsa-miR-153:54-75]

c     g         -             -c       --   au 
 ucaca cugccagug ucauuuuugugau  ugcagcu  agu  u
 ||||| ||||||||| |||||||||||||  |||||||  |||   
 ggugu gacgguuaC AGUGAAAACACUG  ACGUUga  uca  c
c     g         U             AU       cc   cu 

>hsa-mir-153-2 (-41.30)   [hsa-miR-153:53-74]

a     gg      -             gu       -a  aa 
 gcggu  ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g     aa      U             AU       cc  ag 

>hsa-mir-191 (-49.00)   [hsa-miR-191:16-38] [hsa-miR-191*:58-79]

c   u   c      CA         C  AA       uu  -  c 
 ggc gga agcggg  ACGGAAUCC AA  GCAGCUG  gu cu c
 ||| ||| ||||||  ||||||||| ||  |||||||  || ||  
 ccg ccu ucguCC  UGCUUUAGG UU  CGUCGac  ua ga a
u   u   c      CC         -  CG       cu  c  g 

>hsa-mir-9-1 (-42.00)   [hsa-miR-9:16-38] [hsa-miR-9*:55-76]

c       guug   UC               G      u  ug 
 gggguug    uua  UUUGGUUAUCUAGCU UAUGAg gg  u
 |||||||    |||  ||||||||||||||| |||||| ||  g
 ccccaau    aaU  AAGCCAAUAGAUCGA AUAcuu cu  g
a       -aaa   GA               A      -  ga 

>hsa-mir-9-2 (-40.10)   [hsa-miR-9:16-38] [hsa-miR-9*:53-74]

g    c     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aaU  AAGCCAAUAGAUCGA AUAcuu  g u
a    -     a   GA               A      cu g 

>hsa-mir-9-3 (-41.10)   [hsa-miR-9:16-38] [hsa-miR-9*:55-76]

g    cc       -  C               G     gu  ca 
 gagg  cguuucu cU UUUGGUUAUCUAGCU UAUGA  gc  c
 ||||  ||||||| || ||||||||||||||| |||||  ||   
 cucu  guaaaga GA AAGCCAAUAGAUCGA AUAcu  cg  a
a    ua       U  -               A     gc  ag 

>hsa-mir-125a (-48.10)   [hsa-miR-125a-5p:15-38] [hsa-miR-125a-3p:53-74]

u     u u     UC  UG   C    UA        ----  a 
 gccag c cuagg  CC  AGA CCUU  ACCUGUGA    gg c
 ||||| | |||||  ||  ||| ||||  ||||||||    ||  
 cgguc g gguCC  GG  UCU GGAG  UGGACAcu    cc a
c     u c     GA  GU   U    --        ggga  u 

>hsa-mir-125b-2 (-40.60)   [hsa-miR-125b:17-38] [hsa-miR-125b-2*:54-75]

a  aga   uu     UC  UG   C   A        -gg   u 
 cc   cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
 ||   |||  |||||  ||  ||| ||| ||||||||   |||  
 gg   gag  ggauc  GG  UCU GGA UGAACACU   aug u
a  --g   gc     CA  GU   C   C        aca   a 

>hsa-mir-126 (-40.20)   [hsa-miR-126*:15-35] [hsa-miR-126:52-73]

c    gc     - a           U       C cug   c 
 gcug  gacgg g CAUUAUUACUU UGGUACG G   uga a
 ||||  ||||| | ||||||||||| ||||||| |   |||  
 cggc  cugcc C GUAAUAAUGAG GCCAUGC c   acu c
a    ac     G -           U       U -aa   u 

>hsa-mir-127 (-41.10)   [hsa-miR-127-5p:23-44] [hsa-miR-127-3p:57-78]

-----  u   ca   ucu      ugCUG         G  C      --  a 
     ug gau  cug   ccagcc     AAGCUCAGA GG UCUGAU  uc g
     || |||  |||   ||||||     ||||||||| || ||||||  || a
     ac cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacu  u   aa   --u      -----         G  U      cu  a 

>hsa-mir-129-2 (-48.80)   [hsa-miR-129-5p:15-35] [hsa-miR-129-3p:57-78]

u             -       C   CU      ---     acau 
 gcccuucgcgaau CUUUUUG GGU  GGGCUU   GCugu    a
 ||||||||||||| ||||||| |||  ||||||   |||||     
 cgggaggcguuUA GAAAAAC CCA  CCCGAA   cgaua    a
g             C       C   UU      ggc     acuc 

>hsa-mir-134 (-35.20)   [hsa-miR-134:8-29]

c     gU        U  -A   G    ---    g 
 agggu  GUGACUGG UG  CCA AGGG   Gcau c
 |||||  |||||||| ||  ||| ||||   |||| a
 uccca  cacugauc ac  ggu uccc   ugug c
c     ac        c  cg   g    acu    u 

>hsa-mir-136 (-45.80)   [hsa-miR-136:15-37] [hsa-miR-136*:49-70]

u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuUCUGAG UAAAC   GCUACUACcu   a
u        a        -     UCU          cgu 

>hsa-mir-138-1 (-58.80)   [hsa-miR-138:23-45] [hsa-miR-138-1*:63-84]

c    gca          g   AG             UCA       gc a 
 ccug   ugguguggug ggc  CUGGUGUUGUGAA   GGCCGuu  c a
 ||||   |||||||||| |||  |||||||||||||   |||||||  | u
 ggac   aucacaccac CCG  GACCACAACACUU   UCGgcaa  g c
-    ---          a   -G             -CA       ga a 

>hsa-mir-146a (-40.30)   [hsa-miR-146a:21-42] [hsa-miR-146a*:57-78]

c     -----u      u     uU            C  U     g  uc 
 cgaug      guaucc cagcu  GAGAACUGAAUU CA GGGUU ug  a
 |||||      |||||| |||||  |||||||||||| || ||||| ||  g
 gcuac      uauagg gucGA  UUCUUGACUUAA GU UCCag ac  u
u     ugucuc      -     -C            A  C     -  ug 

>hsa-mir-149 (-55.80)   [hsa-miR-149:15-37] [hsa-miR-149*:56-76]

g     -    g   U U G      G     A     g g   g 
 ccggc gccc agc C G CUCCGU UCUUC CUCCC u cuu u
 ||||| |||| ||| | | |||||| ||||| ||||| | |||  
 ggucg cggg uCG G C GGGGCA GGAGG GAggg a gag c
a     a    g   U U G      G     -     - g   c 

>hsa-mir-150 (-57.50)   [hsa-miR-150:16-37] [hsa-miR-150*:51-72]

c      u  -            AC   U       U -   g 
 ucccca gg cccugUCUCCCA  CCU GUACCAG G cug g
 |||||| || ||||||||||||  ||| ||||||| | |||  
 aggggu cc ggGACAGGGGGU  GGA CAUGGUC c gac c
c      -  a            CC   -       c a   u 

>hsa-mir-154 (-37.50)   [hsa-miR-154:15-36] [hsa-miR-154*:51-72]

g       u            U      UGCC    - uuu 
 ugguacu gaagaUAGGUUA CCGUGU    UUCG c   a
 ||||||| |||||||||||| ||||||    |||| |   u
 accauga uuuUUAUCCAGU GGCACA    AAgc g   u
a       c            U      UACU    a ugu 

>hsa-mir-184 (-37.90)   [hsa-miR-184:53-74]

c       g c         c      a c     -    ug 
 cagucac u cccuuauca uuuucc g ccagc uuug  a
 ||||||| | ||||||||| |||||| | ||||| ||||   
 guuagug a GGGAAUAGU AAGAGG C GGUug gaau  c
a       g U         C      - A     u    gu 

>hsa-mir-185 (-53.10)   [hsa-miR-185:15-36] [hsa-miR-185*:50-71]

a     c       UG   A     G         Au  uc 
 ggggg gagggau  GAG GAAAG CAGUUCCUG  gg  c
 ||||| |||||||  ||| ||||| |||||||||  ||   
 cccuc cuucCUG  CUC CUUUC GUCGGGGAc  cc  c
a     c       GU   -     G         -c  uc 

>hsa-mir-186 (-41.24)   [hsa-miR-186:15-36] [hsa-miR-186*:54-75]

u     u                 U     U      ucuggu 
 gcuug aacuuucCAAAGAAUUC CCUUU GGGCUu      u
 ||||| ||||||||||||||||| ||||| ||||||       
 cgagu uugaaGGGUUUUUUAAG GGAAA CCCGaa      u
u     -                 U     -      uuuuau 

>hsa-mir-188 (-39.80)   [hsa-miR-188-5p:15-35] [hsa-miR-188-3p:54-74]

u    -  uc   ca  UC         GU      -ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  GU  GGGACGUAC  CCUCcc     g c
c    c  -u   AC  UU         AC      caaaa u 

>hsa-mir-190 (-32.50)   [hsa-miR-190:15-36]

u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cguuc g gaca c  uauacaaacuauaua  ucaac    u
c     u u    u cu               --     cuaa 

>hsa-mir-193a (-50.80)   [hsa-miR-193a-5p:21-42] [hsa-miR-193a-3p:55-76]

cgaggau   a             U     CG   G  A   gggu 
       ggg gcugagggcUGGG CUUUG  GGC AG UGA    g
       ||| ||||||||||||| |||||  ||| || |||     
       ccc cggcucuUGACCC GAAAC  CCG UC Acu    u
------g   c             U     AU   G  A   aggc 

>hsa-mir-194-1 (-38.30)   [hsa-miR-194:15-36]

a    - uu      U         A      G    cu  gu 
 uggu g  aucaag GUAACAGCA CUCCAU UGGA  gu  a
 |||| |  |||||| ||||||||| |||||| ||||  ||   
 acca u  uaguuu cauugucgu gaggug accu  ua  c
a    u gg      u         a      -    -u  ac 

>hsa-mir-195 (-46.44)   [hsa-miR-195:15-35] [hsa-miR-195*:53-74]

a   u     g  cU          -A          caggga 
 gcu cccug cu  AGCAGCACAG  AAUAUUGGCa      a
 ||| ||||| ||  ||||||||||  ||||||||||       
 ugg gggac ga  UCGUCGUGUC  UUAUAACCgu      g
g   u     g  CC          GG          cugagc 

>hsa-mir-206 (-43.90)   [hsa-miR-206:53-74]

u    c                        cc     u g uu 
 gcuu ccgaggccacaugcuucuuuauau  ccaua g a  a
 |||| ||||||||||||||||||||||||  ||||| | |   
 ugaa ggcuuuGGUGUGUGAAGGAAUGUA  GGUau c u  c
g    c                        -A     - g uu 

>cbr-let-7 (-41.90)   [cbr-let-7:13-34]

a    gg a           U  G           ----   au 
 cugg  u cggUGAGGUAG AG UUGUAUAGUUu    aga  a
 ||||  | ||||||||||| || |||||||||||    |||  u
 gacc  a gccacuccauc uu aacguaucaag    ucu  u
g    au a           u  g           uggc   ca 

>cbr-lin-4 (-40.30)   [cbr-lin-4:21-41]

a      gcuuu  g    -uU   U    C    A      -    uc 
 ucagau     cg ccug   CCC GAGA CUCA GUGUGA gcgu  u
 ||||||     || ||||   ||| |||| |||| |||||| ||||  g
 agucug     gc ggac   ggg cucu gggu cgcacu cgua  a
g      -----  a    cau   c    c    c      u    ca 

>cbr-mir-1 (-40.00)   [cbr-miR-1:56-76]

u     -----g   ag           c      gc     -    ac 
 gcugu      ccg  cugcauacuuc uuacau  ccaua cugu  u
 |||||      |||  ||||||||||| ||||||  ||||| ||||  g
 cggca      ggc  gAUGUAUGAAG AAUGUA  GGUau ggua  u
g     aucuaa   aa           A      -A     a    ag 

>cbr-mir-34 (-34.40)   [cbr-miR-34:18-39]

a  c   -    g   -u A       -U   U     G   -  u  a 
 ag acu caug ucg  g GGCAGUG  GGU AGCUG UUG ca ac c
 || ||| |||| |||  | |||||||  ||| ||||| ||| || ||  
 uc uga guac agc  c ccgucac  cca ucggc aac gu ug a
c  c   u    a   cc a       uu   -     -   a  -  g 

>cbr-mir-42 (-52.30)   [cbr-miR-42:61-80]

u       guc                 c   uuuu        uua u 
 aacccuu   ggaccuuuguggguguu gcc    cggugaag   c g
 |||||||   ||||||||||||||||| |||    ||||||||   | a
 uugggaa   ccuggaGACAUCUACAA UGG    GCCACuuc   g a
c       -au                 U   ----        uuc u 

>cbr-mir-43 (-36.50)   [cbr-miR-43:57-79]

a      --      c      u    -au   u     u   - gaaa 
 ggcgau  ucugcc gugaca caag   gcu gugau aug c    a
 ||||||  |||||| |||||| ||||   ||| ||||| ||| |    u
 ucguua  aggcgg CGCUGU GUUC   UGA CACUA Uac g    g
a      uu      a      C    AUU   -     -   a gguu 

>cbr-mir-44 (-46.40)   [cbr-miR-44:61-81]

-    --a       u         -   gu        -   gaa   c 
 gaga   gggccga cuggaugug cuc  uagucaua gac   uca a
 ||||   ||||||| ||||||||| |||  |||||||| |||   |||  
 cucu   uccgguU GACUUACAC GAG  AUCAGUau cug   agu c
a    agg       C         A   --        a   gaa   u 

>cbr-mir-45-1 (-40.20)   [cbr-miR-45:55-75]

a      c          -   gu         uaa   c u 
 gugcca gcuggaugug cuc  uagucauag   ccu a c
 |||||| |||||||||| |||  |||||||||   ||| | a
 cgcggu CGACUUACAC GAG  AUCAGUauu   gga u a
c      U          A   --         --c   c u 

>cbr-mir-45-2 (-40.40)   [cbr-miR-45:55-75]

a      c            cg          uaa   c u 
 gugcca gcuggauguguu  uuagucauag   ccu a c
 |||||| ||||||||||||  ||||||||||   ||| | a
 cgcggu CGACUUACACAG  GAUCAGUauu   gga u a
c      U            -A          --c   c u 

>cbr-mir-46 (-34.50)   [cbr-miR-46:58-79]

g    a  ag g ag           -cg     u      uc  uug 
 agau ca  u a  cugaagagagc   ucuau gacagu  gc   u
 |||| ||  | |  |||||||||||   ||||| ||||||  ||   u
 ucua gu  a u  gACUUCUCUCG   AGGUA CUGUcg  ug   u
a    a  cu g -a           CUG     -      --  uac 

>cbr-mir-47 (-40.50)   [cbr-miR-47:57-78]

u    -   gaaga           -     uu       ------   a 
 agcu gag     cugaagggagc uuucu  ugacagu      ucg u
 |||| |||     ||||||||||| |||||  |||||||      |||  
 ucgg cuc     gACUUCUCUCG GGAGG  ACUGUca      agc u
c    u   aagug           C     -U       uucuca   u 

>cbr-mir-48 (-37.70)   [cbr-miR-48:18-40]

a   c   uc    u u    G    CU   UA    C      auc 
 gaa cau  ggga g UGAG UAGG  CAG  GAUG GAggag   c
 ||| |||  |||| | |||| ||||  |||  |||| ||||||    
 cuu gug  cccu c gcuc aucc  guc  cuac cuccuu   a
a   c   uu    u c    a    -u   ug    a      acc 

>cbr-mir-49 (-42.90)   [cbr-miR-49:61-82]

-        cauuug     c            a u     c  c  - au 
 accgaaac      ccauc gcaguuuuuugu g gugcu cg gc c  c
 ||||||||      ||||| |||||||||||| | ||||| || || |   
 ugguuuug      gguAG CGUCGAAGAGCA C CACGA gc cg g  u
u        ----aa     A            - -     A  c  u au 

>cbr-mir-50 (-57.00)   [cbr-miR-50:18-41]

u    -    -       c              UU          cu    a 
 ucca ccca ccggccg UGAUAUGUCUGAUA  CUUGGGUUau  gaua u
 |||| |||| ||||||| ||||||||||||||  ||||||||||  |||| g
 aggu gggu ggccggc gcuaugcagauuau  gaacucaaug  uugu a
a    u    c       a              --          --    u 

>cbr-mir-52 (-34.70)   [cbr-miR-52:19-42]

u    c    --    a u C      A   A   UUC    C    cau 
 uucc gcuc  ugac g c ACCCGU CAU UGU   CGUG Uuga   a
 |||| ||||  |||| | | |||||| ||| |||   |||| ||||    
 aagg ugag  acug c g ugggcg gua aca   gcac aacu   g
c    c    cu    g c a      a   -   -ua    u    cga 

>cbr-mir-57 (-33.90)   [cbr-miR-57:15-38]

-     gag      ---    CU    A  G    G     uc   a 
 gcucu   uucguc   UACC  GUAG UC AGCU UGUGU  uga g
 |||||   ||||||   ||||  |||| || |||| |||||  |||  
 cgagg   agguag   gugg  cauc ag ucga gcaca  acu u
a     -ua      caa    au    -  a    -     -u   a 

>cbr-mir-58 (-36.00)   [cbr-miR-58:59-80]

a         c    auu  c        a  cca       u 
 uccauugcc uacu   cg aucucauc cu   guauaua a
 ||||||||| ||||   || |||||||| ||   |||||||  
 aggUAACGG AUGA   GC UAGAGUag ga   uauauau u
a         C    CUU  -        -  --a       a 

>cbr-mir-60 (-26.30)   [cbr-miR-60:46-68]

u     ag        -   a     a   a   cc 
 ucuug  cuggaaag gug cauaa auc ugu  a
 |||||  |||||||| ||| ||||| ||| |||   
 agaAC  GAUCUUUU CAC GUAUU Uag gca  a
c     CU        A   -     A   c   cg 

>cbr-mir-67 (-30.56)   [cbr-miR-67:59-82]

u     -uu   a  a    a     -cu      u     gacaau 
 agaua   ucg uc acuc uucug   gguugu augcu      u
 |||||   ||| || |||| |||||   |||||| |||||      g
 ucuau   agc AG UGAG AAGAU   CCAACA Uacga      a
u     cuu   c  A    A     CCU      C     auuagu 

>cbr-mir-71 (-35.20)   [cbr-miR-71:11-29]

a     a  a         U         g   u   a 
 gcuga cg UGAAAGACA GGGUAGUGA acg cgg g
 ||||| || ||||||||| ||||||||| ||| |||  
 ugacu gc gcuuuuugu cuuaucacu ugc gcu c
c     a  c         -         a   u   c 

>cbr-mir-73 (-36.42)   [cbr-miR-73:56-78]

c    -  -   a     c     u  -c    aa    ca  uaucu 
 gguc cc uca acaac gagcu cc  cguc  gcca  gc     c
 |||| || ||| ||||| ||||| ||  ||||  ||||  ||     u
 ccag gg agu uguUG CUUGA GG  GUAG  CGGU  cg     g
a    a  c   a     A     C  UU    AA    --  uuaca 

>cbr-mir-74 (-36.22)   [cbr-miR-74:54-75]

c    u        u    a    uc     -   ucuca 
 gcac uuugggcu ccau ucuu  ccagc ucc     u
 |||| |||||||| |||| ||||  ||||| |||     u
 cgug AGAUCUGA GGUA AGAA  GGUcg agg     u
a    u        C    A    -C     u   uauca 

>cbr-mir-75 (-30.00)   [cbr-miR-75:57-78]

u    ga -   a   c  u      ca     c    -  --   a 
 gcga  c cga uug ag cgguug  agcuu aaua ca  gac a
 ||||  | ||| ||| || ||||||  ||||| |||| ||  |||  
 cgcu  g gcu aAC UC GCCAAC  UCGAA UUau gu  uug u
g    ac u   a   U  C      CA     A    a  uc   g 

>cbr-mir-77-1 (-43.34)   [cbr-miR-77:61-82]

-      -u                 cu    g     a   auaguc 
 gagcug  gaauuuggauagcugug  cuga gaaau aca      a
 ||||||  |||||||||||||||||  |||| ||||| |||       
 cuuggc  uuuaaACCUGUCGAUAC  GACU CUUua ugu      c
g      uc                 CG    A     c   acccca 

>cbr-mir-79 (-32.70)   [cbr-miR-79:57-78]

a    --auu u    u          uc     aa    u   auu 
 gaac     c ccga cuuuggugau  agcuu  auga aga   c
 ||||     | |||| ||||||||||  |||||  |||| |||   a
 cuug     g ggcU GAAACCAUUG  UCGAA  UAcu ucu   g
g    accuu c    C          GA     -A    -   gca 

>cbr-mir-80 (-33.90)   [cbr-miR-80:61-83]

u   -ca   -uu   c  a         --     u  a       -c  u 
 gga   cuc   ucg uc gcuuucgac  augau cu aacaaua  gc g
 |||   |||   ||| || |||||||||  ||||| || |||||||  ||  
 ccu   gag   agc AG CGAAAGUUG  UACUA GA Uuguugu  cg u
a   aua   cuu   a  C         AU     -  G       aa  c 

>cbr-mir-81 (-34.60)   [cbr-miR-81:57-78]

c    -u      uc         cu      g   ---   auaa 
 guga  uaacgg  gguuuucac  ugaucu aga   gca    c
 ||||  ||||||  |||||||||  |||||| |||   |||     
 cacu  auuguU  UCGAAAGUG  ACUAGA Ucu   cgu    c
u    uc      GA         CU      G   auu   aaga 

>cbr-mir-82 (-43.20)   [cbr-miR-82:59-80]

a       -cu      a         c       g    ---g   ca 
 aguucuu   agcgac gguuuucgc gugaucu caga    uuc  u
 |||||||   |||||| ||||||||| ||||||| ||||    |||   
 ucaggag   ucguUG CCGAAAGUG UACUAGA GUcu    aag  g
c       aau      A         C       -    acaa   aa 

>cbr-mir-85 (-39.60)   [cbr-miR-85:50-73]

c        c           -  g    a      aga 
 cccggugc cgcuuuuucag ua uuug aaccag   u
 |||||||| ||||||||||| || |||| ||||||   g
 gggucaCG GCGGAAAAGUU AU AAAC Uugguu   a
u        U           U  G    A      gau 

>cbr-mir-86 (-43.70)   [cbr-miR-86:16-38]

c      ----      -           G  UU   A   U     auca 
 gaguca    augccg uuUAAGUGAAU CU  GCC CAG Cuucg    u
 ||||||    |||||| ||||||||||| ||  ||| ||| |||||    g
 cucagu    ugcggc ggauucacuua ga  cgg guc gaagu    u
a      uccu      c           -  uu   -   c     acac 

>cbr-mir-87 (-41.40)   [cbr-miR-87:61-80]

-  u    cccac     -       u     c u    a   -  - ugu 
 gg ugug     ccggc cgccuga acuuu g cuca ccu cg c   c
 || ||||     ||||| ||||||| ||||| | |||| ||| || |   a
 cc acac     ggccg GUGGACU UGAAA C GAGU Gga gc g   g
a  c    ---aa     U       U     - -    -   u  u uaa 

>cbr-mir-90 (-38.30)   [cbr-miR-90:58-79]

c      ----        c   u     -    u        caa   aa 
 gcacuc    auuucaag ggc uucaa cgac auaucaac   auc  g
 ||||||    |||||||| ||| ||||| |||| ||||||||   |||   
 ugugag    uagaguuC CCG AAGUU GUUG UAUAGUug   uag  c
u      guuu        C   U     U    -        -ca   au 

>cbr-mir-124 (-43.20)   [cbr-miR-124:61-81]

u      --uc    ua      c    uga   a       -   c  g 
 uuccag    guca  uggcgu cacc   gug cuuuagu gga au u
 ||||||    ||||  |||||| ||||   ||| ||||||| ||| || a
 aggguc    cggu  ACCGUA GUGG   CAC GGAAUca ccu ug u
u      uuaa    gc      A    -CG   -       a   u  a 

>cbr-mir-228 (-42.20)   [cbr-miR-228:17-39]

   c    -     c  A    C         A   A   -a  caa 
auc cacc cuguu gc AUGG ACUGCAUGA UUC CGG  ug   a
||| |||| ||||| || |||| ||||||||| ||| |||  ||    
uag gugg ggcag cg uacc uggcguacu agg gcc  ac   g
   a    u     u  a    a         -   c   ag  agc 

>cbr-mir-230 (-35.70)   [cbr-miR-230:59-81]

a      - u     aua        -      u    g     g   a 
 aaaugc c uaccg   cuuggucg acaauu aaua uaucu auu a
 |||||| | |||||   |||||||| |||||| |||| ||||| |||  
 uuuacg g auggu   GGACCAGC UGUUGA UUAU auagg uag u
c      a u     AAA        G      -    G     -   u 

>cbr-mir-232-1 (-31.60)   [cbr-miR-232:57-79]

a    -   u        u        uu  ccau      -  acc 
 uuca aga uucggauc ccguaguu  ga    uuuauc ca   u
 |||| ||| |||||||| ||||||||  ||    |||||| ||   a
 aagu uuu aggucuAG GGCGUCAA  CU    AAAUag gu   a
c    g   u        U        UU  ACGU      u  aau 

>cbr-mir-233 (-38.92)   [cbr-miR-233:60-82]

a   -    -u              c - u      c    u  aaacc 
 agc auuu  ucugucccgcgcau c c uuguuc aaua uc     a
 ||| ||||  |||||||||||||| | | |||||| |||| ||     g
 ucg uaag  agacAGGGCGUGUA G G AACGAG UUau ag     u
g   a    uu              C C U      -    u  aaaga 

>cbr-mir-234 (-27.10)   [cbr-miR-234:59-79]

g   --c    aaa a     c       c     g       aa    a 
 acu   uagc   g ucaaa gguauuc ugagu aauaaua  aaug g
 |||   ||||   | ||||| ||||||| ||||| |||||||  ||||  
 uga   gucg   c aguUU CCAUAAG GCUCG UUAUUau  uuac u
g   aaa    -aa -     C       A     -       -c    c 

>cbr-mir-236 (-38.50)   [cbr-miR-236:61-83]

a      --caa           -       uu  a    u   -   acca 
 agugac     uguccagcguc uuaccug  ca uauu aga cug    a
 ||||||     ||||||||||| |||||||  || |||| ||| |||     
 uuacug     auaggUCGCAG AAUGGAC  GU AUAA Ucu gau    a
g      uucug           U       -U  C    -   c   accc 

>cbr-mir-241 (-36.40)   [cbr-miR-241:14-34]

a    --    a  c        G       -     --   aagg 
 cggu  guca ag UGAGGUAG UGUGAGA AAUGA  cga    c
 ||||  |||| || |||||||| ||||||| |||||  |||    u
 gcca  uagu uc acuucguc acgcucu uuacu  gcu    c
a    uu    g  a        g       g     uu   aauu 

>cbr-mir-244 (-46.70)   [cbr-miR-244:18-41]

a  c     uc                  CA          -  uc 
 cc aaauu  ucgauuUCUUUGGUUGUA  AAGUGGUAUG gc  u
 || |||||  ||||||||||||||||||  |||||||||| ||   
 gg uuuag  agcuaaggaaaucgacau  uucgccauac cg  c
a  u     uu                  --          u  uu 

>cbr-mir-245 (-31.90)   [cbr-miR-245:53-74]

u     u   -           caa  u   u     uuu  cu 
 caaug cga agagcugcuug   gg acc aauug   ga  c
 ||||| ||| |||||||||||   || ||| |||||   ||   
 guuac guu uCUCGAUGAAC   CC UGG UUAac   cu  u
u     -   a           CUC  C   -     --u  ua 

>cbr-mir-248 (-32.70)   [cbr-miR-248:61-83]

u   -       -auu a    a    c     -uu -   u      aa  uu 
 gca aacugau    c cgau agcg uaucc   c cgu guauuc  gc  g
 ||| |||||||    | |||| |||| |||||   | ||| ||||||  ||   
 ugu uuggcua    g gcuA UCGC AUAGG   G GCA CAUgag  ug  g
u   a       gucu a    C    A     CUC U   -      -c  uu 

>cbr-mir-250 (-34.80)   [cbr-miR-250:56-77]

u    --     ac   uu      c  c     c  -   aau 
 cuuc  ggacc  gcc  caguug cu gugau cg ccg   c
 ||||  |||||  |||  |||||| || ||||| || |||   u
 gaag  ccuGG  CGG  GUCAAC GA CACUa gc ggu   g
u    uu     CA   UU      U  -     a  a   aau 

>cbr-mir-251 (-42.20)   [cbr-miR-251:17-40]

c      gaca                U  C          gaau 
 ccaaau    ucucgUUAAGUAGUGG GC GCUCUUAUUa    u
 ||||||    |||||||||||||||| || ||||||||||    a
 gguuua    agagcaauucaucgcu ug ugagaauaau    u
a      aagg                -  u          gaac 

>cbr-mir-252 (-37.90)   [cbr-miR-252:17-39]

a    -  ----        a       U  U  C C      -   c  cc 
 gguc uc    ucccaguu UAAGUAG AG GC G AGGUAA Ccg uu  a
 |||| ||    |||||||| ||||||| || || | |||||| ||| ||   
 ccag ag    aggguuaa auucguc uc cg c uccauu ggu aa  g
g    u  uuuu        g       u  -  u a      u   u  aa 

>cbr-mir-259 (-29.44)   [cbr-miR-259:17-37]

a    --u gaa      A       UC    UC    U   uuuuca 
 guca   c   acgagu AAUCUCA  CUAA  UGGU gca      a
 ||||   |   |||||| |||||||  ||||  |||| |||       
 cagu   g   uguucg uuagggu  gguu  gcca cgu      u
-    uau auc      g       uu    ua    u   uuuuca 

>cbr-mir-268 (-26.60)   [cbr-miR-268:7-31]

---u    c  C      U         UUUG U     aca 
    gaag GG AAGAAU AGAAGCAGU    G gucag   c
    |||| || |||||| |||||||||    | |||||   a
    cuuc uc uuuuug ucuucguca    c caguc   c
ucuu    u  -      u         ---- u     acu 

>hsa-mir-320a (-46.40)   [hsa-miR-320a:48-69]

      c   -ccuc         uu       c      g 
gcuucg ucc     cgccuucuc  cccgguu uucccg a
|||||| |||     |||||||||  ||||||| ||||||  
uggagu agg     GCGGGAGAG  GGGUCGA AAgggc g
      -   aaaaA         UU       A      u 

>ath-MIR319a (-74.49)   [ath-miR319a:154-174]

    a          g      u   c   uc  g u           a -  u   ac        c  aa  c      gccaaaa 
agag gagcuuccuu agucca uca agg  gu a augauucaauu g cu ccg  ucauucau ca  ua cgaguc       u
|||| |||||||||| |||||| ||| |||  || | ||||||||||| | || |||  |||||||| ||  || ||||||        
ucUC CUCGAGGGAA UCAGGU agu ucu  ua u uacuagguuaa c ga ggc  aguaagua gu  au gcucag       u
    C          G      U   u   cu  g -           a a  u   gu        a  aa  u      aucaaac 

>ath-MIR319b (-80.80)   [ath-miR319b:152-172]

  a     uu          cu       uaauau    -         -ga      ac        c  aa     a    aa   u 
ag gagcu  cuucggucca  cauggag      guga gauuuaauu   cucucg  ucauucau ca  uacca auga  gaa u
|| |||||  ||||||||||  |||||||      |||| |||||||||   ||||||  |||||||| ||  ||||| ||||  |||  
UC CUCGA  GAAGUCAGGU  guaucuc      cacu cugaguuaa   gagagc  aguaagua gu  auggu uacu  cuu u
  C     GG          Uc       ----uu    u         aca      gu        a  aa     a    --   g 

>mmu-mir-19b-2 (-41.20)   [mmu-miR-19b:54-76]

a                  --        guu    -      g 
 cuuacgauuaguuuugca  gauuugca   cagc guauau u
 ||||||||||||||||||  ||||||||   |||| ||||||  
 ggguguuAGUCAAAACGU  CUAAACGU   GUcg uauaua g
a                  AC        ---    g      a 

>mmu-mir-30c-1 (-35.40)   [mmu-miR-30c:17-39] [mmu-miR-30c-1*:56-77]

a     uu    ugu U       U   ACA         ---g  a 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    ug g
 |||||  ||||   | ||||||| |||   |||||||||    ||  
 gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ac c
a     --    uuC U       U   --A         ugga  u 

>mmu-mir-30c-2 (-29.14)   [mmu-miR-30c:14-36] [mmu-miR-30c-2*:54-75]

   u a    uauU       U   ACA         gugaaa 
gag g caga    GUAAACA CCU   CUCUCAGCu      a
||| | ||||    ||||||| |||   |||||||||       
uuc c gucu    CAUUUGU GGA   GAGGGUCga      g
   - -    cUCU       C   --A         aagaau 

>mmu-mir-30d (-34.00)   [mmu-miR-30d:12-33]

a    u   u U         CCC           guaa  c 
 aguc gug c GUAAACAUC   GACUGGAAGcu    gc a
 |||| ||| | |||||||||   |||||||||||    ||  
 ucgg cau g cguuuguag   cugacuuucga    cg c
c    u   c u         --a           --ac  a 

>mmu-mir-148a (-41.10)   [mmu-miR-148a*:23-44] [mmu-miR-148a:61-82]

a    guu        u              -  -A    CC    -   ag 
 gcca   uggucuuu gagacAAAGUUCUG AG  CACU  GACU cug  u
 ||||   |||||||| |||||||||||||| ||  ||||  |||| |||  a
 uggu   gucggaga cucUGUUUCAAGAC UC  GUGA  CUga gau  u
c    ---        u              A  AC    --    a   ag 

>mmu-mir-192 (-37.69)   [mmu-miR-192:14-34]

c   c   g g  C         -     A       uacucuu 
 gug aca g cu UGACCUAUG AAUUG CAGCCag       u
 ||| ||| | || ||||||||| ||||| |||||||        
 cac ugu u ga acuggauac uuaac gucgguc       u
c   u   a g  c         c     c       uccucuc 

>mmu-mir-196a-1 (-37.10)   [mmu-miR-196a:24-45]

u    c gg     uga     g     A    C         - Gc ugg 
 gagc g  acugu   gugaa UAGGU GUUU AUGUUGUUG G  c   c
 |||| |  |||||   ||||| ||||| |||| ||||||||| |  |   u
 uucg c  ugacg   uacuu gucca caaa uacagcaac c  g   u
c    u au     --g     a     c    c         a aa ucu 

>mmu-mir-196a-2 (-45.10)   [mmu-miR-196a:16-37] [mmu-miR-196a*:52-73]

a     uc                  A          a ug   
 gcuga  uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
 |||||  |||||||||||||||||| |||||||||| |  | u
 ugacu  acauugAGUCCGUCAAAG ACAACGGCUc a  uu 
c     --                  A          a gu   

>mmu-mir-200a (-43.20)   [mmu-miR-200a*:16-37] [mmu-miR-200a:54-75]

c    - c   g        -             C    uu  uu 
 uggg c ucu ugggCAUC UUACCGGACAGUG UGGA  uc  g
 |||| | ||| |||||||| ||||||||||||| ||||  ||  g
 accc g gga acuUGUAG AAUGGUCUGUCAC AUcu  ag  c
c    a u   a        C             A    -c  uu 

>mmu-mir-208a (-40.50)   [mmu-miR-208a:50-71]

u         g  ug       g  c  gg      c  a 
 uccuuugac gg  agcuuuu gc cg  uuauac ug c
 ||||||||| ||  ||||||| || ||  |||||| || a
 aggagacug uU  UCGAAAA CG GC  AAUAug ac c
g         g  GU       A  A  AG      c  u 

>mmu-let-7a-1 (-43.50)   [mmu-let-7a:13-34] [mmu-let-7a*:64-85]

u     g     U   GU                uuagggucacac 
 ucacu uggga GAG  AGUAGGUUGUAUAGUU            c
 ||||| ||||| |||  ||||||||||||||||            c
 agugg auCCU UUC  UCAUCUAACAUAUCaa            a
u     a     -   UG                uagagggucacc 

>mmu-let-7a-2 (-41.00)   [mmu-let-7a:17-38]

c    u  u      uU   G   U             uagaguuac   aa 
 ugca gu cccagg  GAG UAG AGGUUGUAUAGUU         auc  g
 |||| || ||||||  ||| ||| |||||||||||||         |||   
 acgu ca ggguuc  uuc auc uccgacaugucaa         uag  g
c    u  -      cu   g   c             ---------   ag 

>mmu-let-7b (-49.00)   [mmu-let-7b:7-28] [mmu-let-7b*:61-82]

g     U                     ----  ---a      u 
 caggg GAGGUAGUAGGUUGUGUGGUU    uc    gggcag g
 ||||| |||||||||||||||||||||    ||    |||||| a
 guCCC UUCCGUCAUCCAACAUAUCaa    ag    cccguu u
a     -                     uaga  ccuc      g 

>mmu-let-7c-1 (-43.30)   [mmu-let-7c:16-37] [mmu-let-7c-1*:61-82]

u      a      uU   G   U             ua  g ua a 
 gugugc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
 |||||| ||||||  ||| ||| |||||||||||||  || |  | c
 cacacg agguuC  UUC AUC UCCAACAUGUCaa  uu a  g c
u      -      CU   G   U             --  g gg u 

>mmu-let-7c-2 (-48.70)   [mmu-let-7c:14-35] [mmu-let-7c-2*:62-83]

a     -   g   U   GU                uugggcucugc 
 cggcc uuu ggg GAG  AGUAGGUUGUAUGGUU           c
 ||||| ||| ||| |||  ||||||||||||||||            
 gccgg gaa uCC UUC  UCAUCUAACAUAUCaa           c
c     u   g   U   UG                uggcgucucgc 

>mmu-let-7e (-45.90)   [mmu-let-7e:15-36]

c    cc  c   cU   G                U  ggaaga ac 
 gcgc  cc ggg  GAG UAGGAGGUUGUAUAGU ga      c  c
 ||||  || |||  ||| |||||||||||||||| ||      |   
 cgcg  gg ccc  uuc auccuccggcauauca cu      g  c
c    uc  a   cu   g                -  --agag ag 

>mmu-let-7f-1 (-44.40)   [mmu-let-7f:8-29] [mmu-let-7f*:64-85]

a    a UG                      ---------       u 
 ucag g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
 |||| |  ||||||||||||||||||||||         ||||||| a
 aguC C  UCCGUUAUCUAACAUAUCaaua         ucccauu u
g    - CU                      gaggauuug       u 

>mmu-let-7f-2 (-40.70)   [mmu-let-7f:8-29]

u      U   GU                uuagggucauac 
 guggga GAG  AGUAGAUUGUAUAGUU            c
 |||||| |||  ||||||||||||||||             
 cacccu uuc  ucaucugacauaucaa            c
g      -   ug                uagagguucuac 

>mmu-mir-15a (-31.22)   [mmu-miR-15a:15-36] [mmu-miR-15a*:52-73]

c     gaguaaa UA        UA          ga gu 
 ccuug       g  GCAGCACA  AUGGUUUGUG  u  u
 |||||       |  ||||||||  ||||||||||  |  g
 ggaac       C  CGUCGUGU  UACCGGACgu  a  a
a     -auaaaA UC        CA          gg aa 

>mmu-mir-16-1 (-39.00)   [mmu-miR-16:16-37] [mmu-miR-16*:58-79]

a       gg   c          -  A        C u   gauu 
 ugucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
 |||||||  ||| |||||||||| || |||||||| | |||     
 acgguug  aug AGUCGUCGUG CA UUAUGACC c auu    u
a       ga   a          U  G        u c   aaag 

>mmu-mir-16-2 (-38.60)   [mmu-miR-16:17-38]

c  g     uc    cU         UA        C  ag   aau 
 au cuugu  cacu  AGCAGCACG  AAUAUUGG Gu  uga   a
 || |||||  ||||  |||||||||  |||||||| ||  |||    
 ua ggaca  guga  ucgucgugu  uuauaacc ca  auu   a
a  g     gu    uu         ua        a  -a   aua 

>mmu-mir-18a (-31.00)   [mmu-miR-18a:17-39] [mmu-miR-18a*:58-79]

u     -        u   --   U   UC   U    A   -  -a  u 
 gcgug cuuuuugu cUA  AGG GCA  UAG GCAG UAG ug  ag a
 ||||| |||||||| |||  ||| |||  ||| |||| ||| ||  ||  
 uguau gaagaaua gGU  UCC CGU  AUC CGUC Auc ac  uc g
c     u        c   CU   U   GA   C    -   u  ga  a 

>mmu-mir-20a (-41.00)   [mmu-miR-20a:27-49] [mmu-miR-20a*:63-84]

g  u  u  --g      ucu    c   -A       UA        G   u   u 
 ug ga gu   acagcu   guag acU  AAGUGCU  UAGUGCAG UAG gug a
 || || ||   ||||||   |||| |||  |||||||  |||||||| ||| |||  
 ac cu ca   ugucga   cguc uGA  UUCACGA  AUUACGUC Auc uac g
g  -  -  aga      --c    a   AA       GC        -   -   c 

>mmu-mir-21 (-46.20)   [mmu-miR-21:18-39] [mmu-miR-21*:56-77]

u      ccu                A     A     A    u a 
 guacca   ugucggaUAGCUUAUC GACUG UGUUG cugu g a
 ||||||   |||||||||||||||| ||||| ||||| |||| | u
 uauggu   acaguCUGUCGGGUAG CUGAC ACAAC ggua c c
c      uuu                -     G     -    - u 

>mmu-mir-22 (-42.00)   [mmu-miR-22*:19-40] [mmu-miR-22:57-78]

a  --u   u   cc               -     A      u  ccu 
 cc   ggc gag  gcaguAGUUCUUCAG UGGCA GCUUUA gu   g
 ||   ||| |||  ||||||||||||||| ||||| |||||| ||   a
 gg   ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
c  ucc   u   -c               G     -      -  acc 

>mmu-mir-23a (-32.50)   [mmu-miR-23a:46-66]

c  a   c     -       g    g      a  c 
 gg cgg ugggg uuccugg gaug gauuug ug c
 || ||| ||||| ||||||| |||| |||||| || a
 cc guc aCCUU AGGGACC UUAC CUAaac ac g
c  a   a     U       G    A      -  u 

>mmu-mir-24-2 (-48.90)   [mmu-miR-24-2*:25-46] [mmu-miR-24:61-82]

-   ucu    ----     ccgc    c  G   A         AA    ug  u 
 gcc   cucc    gggcu    cucc GU CCU CUGAGCUGA  CAGU  au c
 |||   ||||    |||||    |||| || ||| |||||||||  ||||  ||  
 cgg   gagg    cccga    gagG CA GGA GACUUGACU  GUca  ug c
a   -uc    aucc     -ccu    A  A   C         CG    cg  a 

>mmu-mir-26a-1 (-50.40)   [mmu-miR-26a:16-37]

a     -   g      U         C          g gca g 
 aggcc gug ccucgU CAAGUAAUC AGGAUAGGCU u   g u
 ||||| ||| |||||| ||||||||| |||||||||| |   |  
 uccgg cgc ggggca guucauugg ucuuauccgg g   c c
g     g   a      c         u          g -aa c 

>mmu-mir-26b (-42.70)   [mmu-miR-26b:15-35] [mmu-miR-26b*:51-72]

u  -    ga   -   U        UC         ug    g 
 gc ccgg  ccc agU CAAGUAAU  AGGAUAGGU  uggu c
 || ||||  ||| ||| ||||||||  |||||||||  ||||  
 cg ggcc  ggg UCG GUUCAUUA  UCUUGUCCg  acca u
c  u    gg   C   -        CC         --    g 

>mmu-mir-29a (-35.14)   [mmu-miR-29a*:16-37] [mmu-miR-29a:54-75]

a    uuagagg            UUU       C    ucaa 
 cccc       augACUGAUUUC   UGGUGUU AGag    u
 ||||       ||||||||||||   ||||||| ||||    a
 gggg       uAUUGGCUAAAG   ACCACGA Ucuu    g
a    uuaguaa            UCU       -    uuaa 

>mmu-mir-29c (-35.40)   [mmu-miR-29c*:16-37] [mmu-miR-29c:54-75]

a         -  ggc           UCC       ---     u 
 ucucuuaca ca   UGACCGAUUUC   UGGUGUU   Cagag c
 ||||||||| ||   |||||||||||   |||||||   ||||| u
 gggggaugu gu   AUUGGCUAAAG   ACCACGA   guuuu g
a         a  ---           UUU       Ucu     u 

>mmu-mir-27a (-37.20)   [mmu-miR-27a*:14-35] [mmu-miR-27a:56-76]

u  -  u a  a  A         UG  U       a  uccac 
 gg cc g gg gc GGGCUUAGC  CU GUGAGCA gg     a
 || || | || || |||||||||  || ||||||| ||      
 cc gg c cc CG CUUGAAUCG  GA CACUUgu cu     g
c  a  u -  c  C         GU  -       g  gaaac 

>mmu-mir-31 (-48.80)   [mmu-miR-31:28-49] [mmu-miR-31*:64-86]

u   c   uaac     acu      gA     G   C         -U   gaa 
 gcu cug    ucgga   ggagag  GGCAA AUG UGGCAUAGC  Guu   c
 ||| |||    |||||   ||||||  ||||| ||| |||||||||  |||    
 cga gac    agucu   ccuuuC  CCGUU UAC ACCGUAUCG  caa   u
u   c   ----     -gu      UA     A   A         Uc   gag 

>mmu-mir-92a-2 (-40.90)   [mmu-miR-92a*:16-37] [mmu-miR-92a:55-75]

u    --a   a   a     G     U    G  U     -      
 gccc   uuc ucc cAGGU GGGAU GGUG CA UACuu guguu 
 ||||   ||| ||| ||||| ||||| |||| || ||||| |||| a
 uggg   aag agg GUCCG CCCUG UCAC GU AUgaa uauag 
u    aga   a   a     G     U    -  U     a      

>mmu-mir-93 (-47.20)   [mmu-miR-93:15-37] [mmu-miR-93*:54-75]

a   a         -CA       -     U    G   u  aau 
 guc ugggggcuc   AAGUGCU GUUCG GCAG UAG gu   u
 ||| |||||||||   ||||||| ||||| |||| ||| ||   a
 cag acccccgaG   UUCACGA CGAGU CGUC Auc ca   c
a   g         CCC       U     -    -   -  guc 

>mmu-mir-96 (-47.30)   [mmu-miR-96:24-46]

c     cca       gg  g  U         G     UU     ug -  cu 
 cagua   ucugcuu  cc au UUGGCACUA CACAU  UUGCU  u gu  c
 |||||   |||||||  || || ||||||||| |||||  |||||  | ||   
 gucgu   gggcgaa  gg ua aaccgugau gugua  aacga  g cg  u
c     --c       aa  g  u         -     cu     gu u  cc 

>mmu-mir-34a (-43.30)   [mmu-miR-34a:20-41]

c   c    -    a    uU        -   A          --gug   a 
 cag ugug agua uucu  GGCAGUGU CUU GCUGGUUGUu     agu u
 ||| |||| |||| ||||  |||||||| ||| ||||||||||     |||  
 guu acac ucgu aaga  ccgucaua gaa cgacuaacga     ucg u
u   -    g    g    uc        u   -          aggaa   a 

>mmu-mir-129-2 (-48.20)   [mmu-miR-129-5p:15-35] [mmu-miR-129-3p:57-78]

u             -       C   CU      ---     acau 
 gccuuucgcgaau CUUUUUG GGU  GGGCUU   GCugu    a
 ||||||||||||| ||||||| |||  ||||||   |||||     
 cgggaggcgcuUA GAAAAAC CCA  CCCGAA   cgaua    a
g             C       C   UU      ggc     acuc 

>mmu-mir-98 (-50.10)   [mmu-miR-98:16-37]

c   -      ug   U                 U    ---------      aggg 
 ugc acaugc  ggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||| ||||||  ||| ||||||||||||||||| ||||         ||||||    u
 acg ugugug  ucc uuucaucauucaacaua caau         accccg    u
u   g      gu   -                 u    agaagaaug      gauu 

>mmu-mir-103-1 (-36.00)   [mmu-miR-103:52-74]

u     c    c  --    u  u           c   u g a 
 ucuua ugcc uc  ggcu cu uacagugcugc uug u c u
 ||||| |||| ||  |||| || ||||||||||| ||| | |  
 agagu acgg AG  UCGG GA AUGUUACGACG Aac a g a
c     u    a  UA    -  C           -   u g u 

>mmu-mir-103-2 (-32.10)   [mmu-miR-103:52-74]

g    c  g      --   u  u           ----    ua 
 ucuu gu cuuuca  gcu cu uacagugcugc    cuug  g
 |||| || ||||||  ||| || |||||||||||    ||||  c
 agaa ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
a    c  a      AU   -  C           Aacu    uu 

>rno-mir-322 (-42.60)   [rno-miR-322:23-44] [rno-miR-322*:61-80]

ccucgcuga   -       a  CA     AA             g auu 
         cuc cgaaggg ug  GCAGC  UUCAUGUUUUGGA u   g
         ||| ||||||| ||  |||||  ||||||||||||| |    
         ggg gcuuccc AC  CGUCG  AAGUACAAAacuu g   c
------aaa   u       c  AA     CG             g aac 

>mmu-mir-322 (-42.80)   [mmu-miR-322:23-44] [mmu-miR-322*:61-81]

ccucguuga   -       c  CA     AA             g auu 
         cuc cgaaggg ug  GCAGC  UUCAUGUUUUGGA u   g
         ||| ||||||| ||  |||||  ||||||||||||| |    
         ggg gcuuccc AC  CGUCG  AAGUACAAAacuu g   c
------aag   u       C  AA     CG             g aac 

>rno-mir-323 (-37.00)   [rno-miR-323*:16-37] [rno-miR-323:51-71]

---uu      u g        G U     GCGC  U    uca 
     gguacu g agagAGGU G CCGUG    GU CGCu   u
     |||||| | |||||||| | |||||    || ||||    
     cuaugg c uuUCUCCA C GGCAC    CA gcgg   u
cuaau      - g        G U     AUUA  C    uau 

>mmu-mir-323 (-37.00)   [mmu-miR-323-5p:16-37] [mmu-miR-323-3p:51-71]

---uu      u g        G U     GCGC  U    uca 
     gguacu g agagAGGU G CCGUG    GU CGCu   u
     |||||| | |||||||| | |||||    || ||||    
     cuaugg c uuUCUCCA C GGCAC    CA gcgg   u
cuaau      - g        G U     AUUA  C    uau 

>rno-mir-301a (-37.50)   [rno-miR-301a:61-83]

ccugc    ua     ga  ac    c    ---u          ----a       
     uggc  cugcu  cg  ugcu ugac    uuauugcacu     cuguac 
     ||||  |||||  ||  |||| ||||    ||||||||||     ||||| u
     aucg  gacga  gc  aCGA ACUG    GAUAACGUGA     gacaug 
----c    --     gg  cu    A    UUAU          Cgauc       

>rno-mir-324 (-36.70)   [rno-miR-324-5p:16-38] [rno-miR-324-3p:51-72]

cu      gc     C   U C   A     U   U  aaag 
  gacuau  cuccu GCA C CCU GGGCA UGG GU    c
  ||||||  ||||| ||| | ||| ||||| ||| ||     
  cugaug  gggGG CGU G GGA CCCGU ACC ca    u
--      uu     U   C U   C     C   -  gagg 

>mmu-mir-324 (-37.90)   [mmu-miR-324-5p:18-40] [mmu-miR-324-3p:53-72]

aacu      gc     C   U C   A     U   U  aaag 
    gacuau  cuccu GCA C CCU GGGCA UGG GU    c
    ||||||  ||||| ||| | ||| ||||| ||| ||     
    cugaug  ggggg CGU G GGA CCCGU ACC ca    u
cagu      uu     U   C U   C     C   -  gagg 

>rno-mir-325 (-42.60)   [rno-miR-325-5p:16-38] [rno-miR-325-3p:54-75]

----------a              CC   U                Uu gug 
           uauagugcuugguu  UAG AGGUGCUCAGUAAGUG  u   a
           ||||||||||||||  ||| ||||||||||||||||  |    
           gugucacgaacuAA  AUC UCCACGAGUUAUUUgc  a   c
ggucucggauc              CU   C                uu aua 

>mmu-mir-325 (-42.60)   [mmu-miR-325*:16-38] [mmu-miR-325:54-75]

----------a              CC   U                Uu gug 
           uauagugcuugguu  UAG AGGUGCUCAGUAAGUG  u   a
           ||||||||||||||  ||| ||||||||||||||||  |    
           gugucacgaacuAA  AUC UCCACGAGUUAUUUgc  a   c
ggucucggauc              CU   C                uu aua 

>mmu-mir-326 (-51.70)   [mmu-miR-326:60-80]

cuc        guu          c       uugu  a     guuau 
   aucugucu   gggcuggggg agggccu    ga ggcgg     g
   ||||||||   |||||||||| |||||||    || |||||      
   uagacgga   ccUGACCUCC UCCCGGG    CU CCgcu     c
auu        -gc          U       ---U  -     agacu 

>rno-mir-326 (-56.90)   [rno-miR-326:60-80]

cuc        g            c       uugu  a     guuau 
   aucugucu uggggcuggggg agggccu    ga ggcgg     g
   |||||||| |||||||||||| |||||||    || |||||      
   uagacgga gcccUGACCUCC UCCCGGG    CU CCgcu     c
auu        -            U       ---U  -     agacu 

>rno-mir-327 (-38.30)   [rno-miR-327:16-34]

---------------------      --    c   uCCUU         G   G  g 
                     gucuga  ugcc uca     GAGGGGCAU AGG Ua u
                     ||||||  |||| |||     ||||||||| ||| || c
                     caggcu  acgg agu     cucccugua ucc au a
ggaguguucgguaagguugua      uc    u   ----u         g   g  g 

>rno-let-7d (-51.32)   [rno-let-7d:14-35] [rno-let-7d*:68-89]

u    u       A              C      -------uua         
 gggc ccuagga GAGGUAGUAGGUUG AUAGUU          gggcagag 
 |||| ||||||| |||||||||||||| ||||||          ||||||| a
 uccg ggauUCU UUCCGUCGUCCAGC UAUCaa          cccguuuu 
u    -       -              A      uugaggaaca         

>rno-mir-328 (-50.81)   [rno-miR-328:48-69]

---     -      -------     ga     u     agaaa  au 
   ugggg cagggg       ggcag  ggggc caggg     gc  c
   ||||| ||||||       |||||  ||||| |||||     ||  u
   acccc gucccc       CCGUC  UCCCG GUCcc     cg  a
uaa     u      UGCCUUC     UC     -     -----  ac 

>mmu-mir-328 (-52.40)   [mmu-miR-328:61-82]

cugucuc  ag cu     a         ga     u     a aaa  a 
       gg  c  ggggc ggggggcag  ggggc caggg g   gu u
       ||  |  ||||| |||||||||  ||||| ||||| |   ||  
       cc  g  cccUG CUUCCCGUC  UCCCG GUCcc c   ca c
--ugaac  cu uc     C         UC     -     - -ga  u 

>rno-mir-329 (-36.50)   [rno-miR-329:61-82]

uguucgcuuc      c            uu      cuc      -   g 
          ugguac ggaagagagguu  cugggu   uguuuc uuu a
          |||||| ||||||||||||  ||||||   |||||| ||| u
          acuaug cuuUUUUUCCAA  GACCCA   ACAAag aag g
-----ccuaa      a            UC      --C      u   a 

>mmu-mir-329 (-36.50)   [mmu-miR-329:61-82]

uguucgcuuc      c            uu      cuc      -   g 
          ugguac ggaagagagguu  cugggu   uguuuc uuu a
          |||||| ||||||||||||  ||||||   |||||| ||| u
          acuaug cuuUUUUUCCAA  GACCCA   ACAAag aag g
-----ccuaa      a            UC      --C      u   a 

>rno-mir-330 (-41.92)   [rno-miR-330:21-42] [rno-miR-330*:60-82]

acccuuu   -  u u           --    -    U   AG    uucaa 
       ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
       ||| || | |||||||||||  |||| |||| |||  ||||     a
       ucg cu g gauggAGAGAC  CCGG ACAC GAA  CGag     u
------c   u  c c           GU    G    -   -A    caauc 

>mmu-mir-330 (-41.92)   [mmu-miR-330:22-43] [mmu-miR-330*:61-83]

gacccuuu   -  u u           --    -    U   AG    uucaa 
        ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
        ||| || | |||||||||||  |||| |||| |||  ||||     a
        ucg cu g gauggAGAGAC  CCGG ACAC GAA  CGag     u
-------c   u  c c           GU    G    -   -A    caacc 

>rno-mir-331 (-44.32)   [rno-miR-331:61-81]

gaguc   ucuu         u        u    u       au ccaga 
     ugg    guuuggguu guucuagg augg cccaggg  c     u
     |||    ||||||||| |||||||| |||| |||||||  |     c
     acc    caaauccaa cAAGAUCC UAUC GGGUCCC  g     a
----u   ----         c        -    C       CG accaa 

>mmu-mir-331 (-43.72)   [mmu-miR-331-5p:26-47] [mmu-miR-331-3p:61-81]

gagucu  uuuu         u        U    U       AU Ccaga 
      gg    guuuggguu guuCUAGG AUGG CCCAGGG  C     u
      ||    ||||||||| |||||||| |||| |||||||  |     c
      cc    caaauccaa cAAGAUCC UAUC GGGUCCC  g     a
----ug  ----         c        -    C       CG accaa 

>rno-mir-140 (-55.00)   [rno-miR-140:22-43] [rno-miR-140*:61-81]

-   u    cucu        -  A             A       uu   uc 
 gug cucu    guguccug cC GUGGUUUUACCCU UGGUAGg  aca  a
 ||| ||||    |||||||| || ||||||||||||| |||||||  |||   
 cac gagg    cauaggac GG CACCAAGAUGGGA ACCAUcu  ugu  u
c   -    ---u        a  -             C       --   cg 

>rno-mir-335 (-39.70)   [rno-miR-335:16-38]

--------ucuuu    c        A         C        Uuu    u 
             uggg gggggUCA GAGCAAUAA GAAAAAUG   guuu u
             |||| |||||||| ||||||||| ||||||||   |||| c
             acuc ccuccagu cucguuauu cuuuuugc   caaa g
accgauauuguuu    u        c         a        ---    u 

>rno-mir-336 (-36.10)   [rno-miR-336:16-36]

--------au  ga   u     U  -      --CAU         - ugag 
          gu  ccg gccuc CA CCCUUC     AUCUAGUCU c    a
          ||  ||| ||||| || ||||||     ||||||||| |     
          ca  ggu cggag gu gggaag     uaggucaga g    a
auuucgaggu  aa   c     u  a      uaccu         a uaaa 

>rno-mir-337 (-49.60)   [rno-miR-337:60-82]

aguguagugagaa uu         -   c         c         u  ca 
             g  ggggggugg gaa ggcgucaug aggaguuga ug  c
             |  ||||||||| ||| ||||||||| ||||||||| ||   
             c  ucccccacu cUU CCGUAGUAU UCCUCGACU ac  a
-----------aa -u         u   U         A         U  cg 

>mmu-mir-337 (-49.60)   [mmu-miR-337-5p:27-47] [mmu-miR-337-3p:61-81]

caguguagugagaa uu         -   C         C         u  ca 
              g  ggggggugg GAA GGCGUCAUG AGGAGUUga ug  c
              |  ||||||||| ||| ||||||||| ||||||||| ||   
              c  ucccccacu cuu CCGUAGUAU UCCUCGACU ac  a
-------------a -u         u   U         A         U  cg 

>rno-mir-148b (-34.60)   [rno-miR-148b-5p:24-45] [rno-miR-148b-3p:61-82]

caggcacucuu   a       uG         U  A   ------    -  u 
           agc uuugagg  AAGUUCUGU AU CAC      UCAG Gc g
           ||| |||||||  ||||||||| || |||      |||| ||  
           ucg aagcucU  UUCAAGACA UA GUG      aguc cg u
------aucuu   a       GU         C  C   ACUgaa    u  g 

>mmu-mir-148b (-34.60)   [mmu-miR-148b:61-82]

caggcacccuu   a       ug         u  a   ------    -  u 
           agc uuugagg  aaguucugu au cac      ucag gc g
           ||| |||||||  ||||||||| || |||      |||| ||  
           ucg aagcucU  UUCAAGACA UA GUG      aguc cg u
------aucuu   a       GU         C  C   ACUgaa    u  g 

>rno-mir-338 (-27.20)   [rno-miR-338*:6-27] [rno-miR-338:41-63]

uccc      U   -         -   G g g 
    cAACAA AUC CUGGUGCUG AGU g u c
    |||||| ||| ||||||||| ||| | |  
    GUUGUU UAG GACUACGAC Uca u a a
agaA      U   U         C   g g c 

>mmu-mir-338 (-42.20)   [mmu-miR-338-5p:26-47] [mmu-miR-338-3p:61-82]

caacgcugcaca   c      cc      U   -         -   G g g 
            ggc guccuc  cAACAA AUC CUGGUGCUG AGU g u c
            ||| ||||||  |||||| ||| ||||||||| ||| | |  
            ucg cgggag  GUUGUU UAG GACUACGAC Uca u a a
--------accg   a      aa      U   U         C   g g c 

>rno-mir-339 (-44.20)   [rno-miR-339-5p:16-38] [rno-miR-339-3p:51-73]

----------ac         a c U C     C  C   A      --   u 
            gggguggac c g C CUGUC UC AGG GCUCAC  Gua g
            ||||||||| | | | ||||| || ||| ||||||  |||  
            ccccaccug g C G GACAG AG UCC CGAGUg  cgu c
aacccgucacgu         a A C A     C  C   G      uc   c 

>mmu-mir-339 (-44.10)   [mmu-miR-339-5p:16-38] [mmu-miR-339-3p:51-73]

----------ac       c    aU C     CU  -   A      --   u 
            ggggugg cacu  C CUGUC  CC AGG GCUCAC  Gua g
            ||||||| ||||  | |||||  || ||| ||||||  |||  
            ccccacc gugG  G GACAG  GG UCC CGAGUg  cgu c
caccugucacgu       u    CC A     -C  C   G      uc   c 

>rno-mir-340 (-32.80)   [rno-miR-340-5p:19-40] [rno-miR-340-3p:61-83]

cacuu     c      aU       -CAA      U    g     ug 
     guacu ggugug  UAUAAAG    UGAGAC GAUU ucaug  u
     ||||| ||||||  |||||||    |||||| |||| |||||  c
     uaugg ccauaC  AUAUUUC    ACUCUG CUag ggugu  g
-auuc     u      CG       AUUG      C    -     uu 

>mmu-mir-340 (-34.10)   [mmu-miR-340-5p:19-40] [mmu-miR-340-3p:61-82]

caauu     u      aU       -CAA      U    g     ug 
     guacu ggugug  UAUAAAG    UGAGAC GAUU ucaua  u
     ||||| ||||||  |||||||    |||||| |||| |||||  c
     uaugg ccauac  AUAUUUC    ACUCUG CUag ggugu  g
-auuc     u      CG       AUUG      C    -     uu 

>rno-mir-341 (-47.10)   [rno-miR-341:57-77]

aaaau   --  u   ag       gu          cu   u   u a 
     gau  ga guc  uuggccg  cggccgaucg  cgg cug c g
     |||  || |||  |||||||  ||||||||||  ||| ||| | u
     cug  cu cgg  gacUGGC  GCUGGCUAGC  GCU ggc g c
--cuu   uc  u   cu       UG          UG   -   u a 

>mmu-mir-341 (-47.10)   [mmu-miR-341:57-77]

aaaau   --  u   ag       gu          cu   u   u a 
     gau  ga guc  uuggccg  cggccgaucg  cgg cug c g
     |||  || |||  |||||||  ||||||||||  ||| ||| | u
     cug  cu cgg  gacUGGC  GCUGGCUAGC  GCU ggc g c
--cuu   uc  u   cu       UG          UG   -   u a 

>rno-mir-342 (-48.90)   [rno-miR-342-5p:19-40] [rno-miR-342-3p:61-83]

gaaaau    u        G      --UA      AUUGA      ugg  a 
      gggc caaggugA GGGUGC    UCUGUG     Gggaca   uc a
      |||| |||||||| ||||||    ||||||     ||||||   ||  
      uccg guuccacU CCCACG    AGACAC     CUCUgu   ag u
-agucg    -        G      CUAA      ----A      -ua  g 

>mmu-mir-342 (-48.90)   [mmu-miR-342-5p:19-40] [mmu-miR-342-3p:61-83]

gaaaau    u        G      --UA      AUUGA      ugg  a 
      gggc caaggugA GGGUGC    UCUGUG     Gggaca   uc a
      |||| |||||||| ||||||    ||||||     ||||||   ||  
      uccg guuccacU CCCACG    AGACAC     CUCUgu   ag u
-agucg    -        G      CUAA      ----A      -ua  g 

>rno-mir-343 (-40.60)   [rno-miR-343:61-80]

gcaccuucauggacc   --a    - -g    ug  g         c   --     
               ugg   guag a  uggg  ug cggggggag agg  gccc 
               |||   |||| |  ||||  || ||||||||| |||  ||| a
               acc   cguc u  ACCC  GU GCCUCCCUC Ucc  cggg 
--------------a   gua    c AG    GU  -         -   aa     

>rno-mir-344-1 (-52.10)   [rno-miR-344-5p:23-46] [rno-miR-344-3p:61-83]

------c      cagaguuu    ca        CC         UC        a 
       ugcagc        uuac  gUCAGGCU  UGGCUAGAU  CAGGuacc a
       ||||||        ||||  ||||||||  |||||||||  ||||||||  
       acgucg        aaUG  CAGUCCGA  ACCGAUCUA  GUccaugg c
aaagaaa      --------    -C        -A         --        u 

>mmu-mir-344-1 (-58.70)   [mmu-miR-344:61-83]

cugcagc        uuac          cc         uc        a 
       caggguuu    cagucaggcu  uggcuagau  cagguacc g
       ||||||||    ||||||||||  |||||||||  ||||||||  
       gucccgaa    GUCAGUCCGA  ACCGAUCUA  GUccaugg c
---acaa        ---U          -A         --        u 

>rno-mir-345 (-47.60)   [rno-miR-345-5p:16-36] [rno-miR-345-3p:54-75]

--------acc   gu     c  G U          C   U    -      
           caa  ccagg cU C GACCCCUAGU CAG GCuu guggu 
           |||  ||||| || | |||||||||| ||| |||| |||| g
           guu  ggucc GA G CUGGGGAUCA GUC Cggg caucg 
ggacaccucua   ug     A  G U          A   C    u      

>mmu-mir-345 (-47.60)   [mmu-miR-345-5p:17-38] [mmu-miR-345-3p:55-76]

--------acc   gu     c  G U          C   U    -      
           caa  ccagg cu C GACCCCUAGU CAG GCUU guggu 
           |||  ||||| || | |||||||||| ||| |||| |||| g
           guu  ggucC GA G CUGGGGAUCA GUC cggg caucg 
ggacaccucua   ug     A  G U          A   C    u      

>rno-mir-346 (-49.00)   [rno-miR-346:16-38]

-----------     g ug    u    CU    G   G        U  guug 
           ucugu u  ggca cUGU  GCCU AGU CCUGCCUC cu    c
           ||||| |  |||| ||||  |||| ||| |||||||| ||     
           agacg g  ccgu gacg  cggg ucg ggacggag ga    u
cuuccucgucg     - gu    c    uc    -   g        -  aguc 

>mmu-mir-346 (-50.60)   [mmu-miR-346:16-38]

-----------     g ug    u    CU    G   G        U  guug 
           ucugu u  ggcg cUGU  GCCC AGU CCUGCCUC cu    c
           ||||| |  |||| ||||  |||| ||| |||||||| ||     
           agacg g  ccgu gacg  cggg ucg ggacggag ga    u
cuuccucgucg     - gu    c    uc    -   g        -  aguc 

>rno-mir-347 (-49.50)   [rno-miR-347:61-79]

-    -    -     ug   g     c  g    uca       uc 
 gagc cccu gcugg  ggc cgggg gg gguu   ggugguc  g
 |||| |||| |||||  ||| ||||| || ||||   |||||||  c
 cuug gggg cgACC  CUG GUCUC CU Ucag   ccgccgg  g
c    a    u     CG   G     C  G    --c       ug 

>rno-mir-349 (-36.00)   [rno-miR-349:61-82]

-------   g  u    caugua         g  -         ucua c   u 
       gaa ac cuag      agguugggg ag ggggcugug    g aag c
       ||| || ||||      ||||||||| || |||||||||    | |||  
       cuu ug gaUC      UCCAAUUCU UC UCCCGACac    c uuc u
ccucggc   g  -    ------         G  G         --cc c   u 

>rno-mir-129-2 (-50.90)   [rno-miR-129:19-39] [rno-miR-129*:61-82]

agacu             -       C   CU      ---     acau 
     gcccuucgcgaau CUUUUUG GGU  GGGCUU   GCugu    a
     ||||||||||||| ||||||| |||  ||||||   |||||     
     cgggaggcgcuUA GAAAAAC CCA  CCCGAA   cgaua    a
-cgcg             C       C   UU      ggc     acuc 

>rno-mir-20a (-36.40)   [rno-miR-20a:16-38] [rno-miR-20a*:52-72]

     ucu    c   -A       UA        G   u   u 
cagcu   guag acU  AAGUGCU  UAGUGCAG UAG gug c
|||||   |||| |||  |||||||  |||||||| ||| |||  
gucga   cguc ugA  UUCACGA  AUUACGUC Auc uac g
     --c    a   CA       GC        -   -   u 

>rno-mir-350 (-28.02)   [rno-miR-350:61-84]

agaugccuug      c   a  -      cac u      -     gugag 
          cuccua aag gu aaagug   g gcuuug ggaca     g
          |||||| ||| || ||||||   | |||||| |||||     a
          gaggau uuc CA UUUCAC   C CGAAAC CUUgu     a
-----guuga      -   c  C      AUA C      A     aauaa 

>mmu-mir-350 (-32.12)   [mmu-miR-350:61-82]

agaugccuug      c   a  -      c   c      -     gugag 
          cuccua aag gu aaagug aug gcuuug ggaca     g
          |||||| ||| || |||||| ||| |||||| |||||     a
          gaggau uuc ca UUUCAC UAC CGAAAC CUUgu     a
-----guuga      -   c  C      A   C      A     aauaa 

>rno-mir-7a-1 (-44.00)   [rno-miR-7a:19-41] [rno-miR-7a*:60-81]

ugu      a  u        A     A       U      --     a 
   uggccu gu cugugUGG AGACU GUGAUUU GUUGUu  uuuag u
   |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   accgga ca gguaUACC UCUGA CACUAAA CAACAg  gaauc a
ucc      -  c        G     -       -      ca     a 

>rno-mir-351 (-32.50)   [rno-miR-351:16-40]

cauggcac     u     UG   A   C     G    Agg ga 
        cucca uUCCC  AGG GCC UUUGA CCUG   u  a
        ||||| |||||  ||| ||| ||||| ||||   |   
        gaggu aaggg  ucc cgg gaacu ggac   a  a
--------     c     --   g   a     -    aaa aa 

>mmu-mir-351 (-37.79)   [mmu-miR-351:16-39]

----ca      ----     u     UG   A   C     G    gagugaa 
      uggcac    cuccg uUCCC  AGG GCC UUUGA CCUG       a
      ||||||    ||||| |||||  ||| ||| ||||| ||||        
      auugug    gaggu aaggg  ucc cgg gaacu ggac       a
cuucaa      agaa     c     --   g   a     -    aaaaaaa 

>rno-mir-352 (-14.00)   [rno-miR-352:61-81]

guacauauguugaagauuauuaauauauagagugg ug     g  -    ua  a   g 
                                   g  uugug ug guag  ug uau u
                                   |  ||||| || ||||  || ||| A
                                   u  agcAU AU CGUU  AU AUG G
--------------------------aguauguga gu     G  A    GG  G   A 

>rno-mir-135b (-49.70)   [rno-miR-135b:16-38]

------c     --                   CAU          uug ug 
       gcucu  gcuguggccUAUGGCUUUU   UCCUAUGUGA   c  u
       |||||  |||||||||||||||||||   ||||||||||   |   
       cgggg  ugacaucggguaccgaaaa   gggauguacu   g  u
ccucgaa     ag                   -uc          caa cc 

>mmu-mir-135b (-49.70)   [mmu-miR-135b:16-38]

------c     --                   CAU          uug ug 
       gcucu  gcuguggccUAUGGCUUUU   UCCUAUGUGA   c  c
       |||||  |||||||||||||||||||   ||||||||||   |   
       cgggg  ugacaucggguaccgaaaa   gggauguacu   g  u
ccucgaa     ag                   -uc          caa cc 

>rno-mir-151 (-47.40)   [rno-miR-151:16-36] [rno-miR-151*:51-71]

--------------a   cu      c            CA          u uc 
               gcg  uuccug ccUCGAGGAGCU  CAGUCUAGUa g  u
               |||  |||||| ||||||||||||  |||||||||| |  c
               ugc  agggac GGAGUUCCUCGG  GUCAGAUCau c  c
gcccuccacucauac   -u      a            -A          c cu 

>rno-mir-101b (-33.40)   [rno-miR-101b:61-81]

aucugagac  -a  ug  c                    c a    --g  g 
         ug  ac  uc uuuuucgguuaucaugguac g ugcu   ua a
         ||  ||  || |||||||||||||||||||| | ||||   ||  
         ac  ug  gg aagAAGUCGAUAGUGUCAUG C AUgg   gu u
-------cu  cg  gu  u                    A -    aaa  c 

>mmu-mir-101b (-39.70)   [mmu-miR-101b:61-81]

aucugagac  -a      c                  accgau      g  c 
         ug  acugcc uuuuucgguuaucauggu      gcugua cu u
         ||  |||||| ||||||||||||||||||      |||||| || g
         ac  uggcgg aagAAGUCGAUAGUGUCA      UGACAU ga a
-------cu  cg      u                  ------      g  a 

>hsa-mir-200c (-31.30)   [hsa-miR-200c*:5-26] [hsa-miR-200c:44-66]

  cu    -      A        U   u  ggu 
cc  CGUC UUACCC GCAGUGUU GGg gc   u
||  |||| |||||| |||||||| ||| ||    
gg  GUAG AAUGGG CGUCAUAA cuc ug   g
  AG    U      C        U   -  agg 

>hsa-mir-1-1 (-30.00)   [hsa-miR-1:46-67]

u    a                gc     ---   a 
 ggga acauacuucuuuauau  ccaua   ugg c
 |||| ||||||||||||||||  |||||   ||| c
 cucU UGUAUGAAGAAAUGUA  GGUau   auc u
a    A                -A     cga   g 

>mmu-mir-1-2 (-25.30)   [mmu-miR-1:47-68]

u     c                ac     uga  a 
 cagag acauacuucuuuaugu  ccaua   ac u
 ||||| ||||||||||||||||  |||||   || u
 guuuU UGUAUGAAGAAAUGUA  GGUau   ug c
-     A                -A     -cg  a 

>osa-MIR156a (-57.80)   [osa-miR156a:7-26]

     g       -     -        a      uguu   uu     aau 
ggagg UGACAGA AGAGA GUGAGCAC cguggu    ucc  gcaua   g
||||| ||||||| ||||| |||||||| ||||||    |||  |||||   a
ccucc acugucu ucucu cacucgug gcaucg    agg  cguau   u
     -       c     u        c      ----   uu     ccg 

>osa-MIR156b (-94.20)   [osa-miR156b:43-62]

u    --          a   --    ucua     uu   ----a  u        -             a      gcuu          - a 
 uguc  uugagagggg aga  gauc    ugggu  ugg     gg cUGACAGA AGAGAGUGAGCAC cacggu    ucuuagcaug c a
 ||||  |||||||||| |||  ||||    |||||  |||     || |||||||| ||||||||||||| ||||||    |||||||||| |  
 acag  gacucucuuc ucu  uuag    acccg  acc     cc gacugucu ucucucacucgug gugucg    agggucguac g g
g    uu          c   aa    uaua     -u   acuug  -        a             c      ----          c a 

>osa-MIR156c (-91.10)   [osa-miR156c:29-48]

            gg u       g ---          -     -               gacu   uu     cu aa 
ggaggaagagag  g gagaggu a   ggcUGACAGA AGAGA GUGAGCACacauggu    uuc  gcaug  g  u
||||||||||||  | ||||||| |   |||||||||| ||||| |||||||||||||||    |||  |||||  |   
ccucuuucucuc  u cucucua u   ccgacugucu ucucu cacucguguguaucg    aag  cguac  c  g
            uu -       g uua          c     u               ----   uu     -u ag 

>osa-MIR156d (-63.20)   [osa-miR156d:20-39]

    --a      cau    ------u        -   -         a     ugau  c   c   a 
ggag   agcucu   gaga       UGACAGAA GAG AGUGAGCAC cggcg    gg cgg aua a
||||   ||||||   ||||       |||||||| ||| ||||||||| |||||    || ||| ||| a
ccuc   ucggga   cucu       acugucuu cuc ucacucgug gccgc    cc gcc uau u
    aac      -cu    uucuccc        u   c         c     ---u  u   c   c 

>osa-MIR156e (-73.40)   [osa-miR156e:10-29]

     ga          -   -         a     gggc          - g 
ggcgc  ggUGACAGAA GAG AGUGAGCAC cggcc    gugacggcac c g
|||||  |||||||||| ||| ||||||||| |||||    |||||||||| | c
ccgug  cuacugucuu cuc ucacucgug gccgg    cgcugccgug g g
     gc          u   g         c     ----          c g 

>osa-MIR156f (-81.30)   [osa-miR156f:4-23]

           -    -        a       c  a   caucgaucuaucaaucuucccuucgacaggauagcuagauagaaagaaagagag 
aguUGACAGAA GAGA GUGAGCAC cagcggc ag cug                                                      g
||||||||||| |||| |||||||| ||||||| || |||                                                       
ucgacugucuu cucu cacucgug gucgccg uc gac                                                      c
           u    u        c       -  -   auaguaguaguaguaaaguagagagagagagagagagaagguaccggcggcugc 

>osa-MIR156g (-61.00)   [osa-miR156g:4-23]

          -     -        a      gcagacugcaucugaauuaccuguug 
ggcUGACAGA AGAGA GUGAGCAC cagcgg                          c
|||||||||| ||||| |||||||| ||||||                           
ucgacugucu ucucu cacucgug guugcc                          g
          c     u        c      guucgacgcaggcagcagaagaagca 

>osa-MIR156h (-65.70)   [osa-miR156h:9-28]

     u          -   -         a     c  c   u  c    g 
gagau guUGACAGAA GAG AGUGAGCAC cggcg gg ggc ag cauc g
||||| |||||||||| ||| ||||||||| ||||| || ||| || |||| c
cucua cgacugucuu cuc ucgcucgug gccgc cc ccg uc guag g
     -          u   c         c     -  -   -  c    g 

>osa-MIR156i (-60.70)   [osa-miR156i:3-22]

         -    -         a      g cgga       cgg 
ggUGACAGA AGAG AGUGAGCAC cggccg g    acggcac   c
||||||||| |||| ||||||||| |||||| |    |||||||    
cuacugucu ucuc ucacucgug gccggc c    ugccgug   g
         g    g         c      g ----       uag 

>osa-MIR156j (-102.10)   [osa-miR156j:42-61]

          ----      uc   cau    aaggc     u          -   -         a     c  c   u  c    g 
uuggggcggg    gcggga  gag   auga     gagau guUGACAGAA GAG AGUGAGCAC cggcg gg ggc ag cauc g
||||||||||    ||||||  |||   ||||     ||||| |||||||||| ||| ||||||||| ||||| || ||| || |||| c
agccccgccc    cgcccu  cuc   uacu     cucua cgacugucuu cuc ucgcucgug gccgc cc ccg uc guag g
          ccua      cc   -ac    -----     -          u   c         c     -  -   -  c    g 

>osa-MIR160a (-49.10)   [osa-miR160a:4-24]

      C       C          a  u    ac     caug 
gugUGC UGGCUCC UGUAUGCCAc ca guag  caacc    g
|||||| ||||||| |||||||||| || ||||  |||||     
cguacg accgagg acgugcggug gu cauc  guugg    u
      a       a          g  -    -c     ucug 

>osa-MIR160b (-67.60)   [osa-miR160b:30-50]

     --uu  uuuu    --   uugaga      C       C              gu   cca     ugg 
aaggu    gg    gauc  ggc      gcgUGC UGGCUCC UGUAUGCCAcucau  agc   aucca   u
|||||    ||    ||||  |||      |||||| ||||||| ||||||||||||||  |||   |||||   g
uuccg    uc    cuag  ccg      cguacg accgagg acgugcggugggug  ucg   uaggu   u
     ucuu  -ucu    ua   ----ug      a       a              --   ---     uug 

>osa-MIR160c (-60.20)   [osa-miR160c:7-27]

         C       C         cu    -   a     aaa   c 
ggaaugUGC UGGCUCC UGUAUGCCA  cauc uag gcaac   cuu u
||||||||| ||||||| |||||||||  |||| ||| |||||   |||  
ccuuauacg accgagg acgugcggu  guag auc cguug   gag g
         a       c         ag    u   -     -ga   c 

>osa-MIR160d (-72.80)   [osa-miR160d:8-28]

gg  a     C       C         cu   -    cu       ucagu    -    c     ---    c 
  gg uaUGC UGGCUCC UGUAUGCCA  cgc guag  gccaaac     ugaa acaa ugccu   ucuc c
  || ||||| ||||||| |||||||||  ||| ||||  |||||||     |||| |||| |||||   |||| g
  cc guacg accgagg gcgugcggu  gcg cauc  cgguuug     gcuu uguu acgga   agag g
--  a     a       a         ag   u    -u       --cau    g    -     cuu    c 

>osa-MIR162a (-70.49)   [osa-miR162a:143-163]

     ugc    gc    u            cc     u  c    ----   gcugauccaggagcggcgaauuucuuugagaggg 
gguga   cugg  gcag gguuuaucgauc  uuccc gc uugu    ggc                                  u
|||||   ||||  |||| ||||||||||||  ||||| || ||||    |||                                   
ccgcu   GACC  CGUC CCAAAUAGCUag  aaggg cg aaca    ccg                                  g
     cuu    UA    U            cu     -  c    gcaa   acguuguuccugguuuuccuucuuuuuuuuucuu 

>osa-MIR164a (-69.30)   [osa-miR164a:17-37]

       --      c u        C   G        -   auau    aucauc    --u     -u  uc u -ua  u 
gugagaa  ggaccg g UGGAGAAG AGG CACGUGCA ugc    guuc      aucu   cuucc  cc  c c   gc c
|||||||  |||||| | |||||||| ||| |||||||| |||    ||||      ||||   |||||  ||  | |   ||  
cacucuu  ucuggc c accucuuc ucu gugcacgu acg    caag      uaga   gaagg  gg  g g   cg c
       uu      c u        c   g        c   --cu    -----a    uuu     uu  gu u uuc  a 

>osa-MIR164b (-68.50)   [osa-miR164b:9-29]

    a           CA         CAuu        cuc  -c  c       
gugc cggUGGAGAAG  GGGCACGUG    accaucca   gc  ug cggccg 
|||| |||||||||||  |||||||||    ||||||||   ||  || ||||| c
cacg gccaccucuuc  cccguguac    ugguaggu   cg  ac gccggc 
    a           ug         uucu        -ac  uu  c       

>osa-MIR166a (-67.16)   [osa-miR166a:110-130]

u         ugcu      u      uu         a          caccuugcgguuuugaggaugauu 
 gaagcuauu    ucugag ggaaug  gucugguuc aggucucaug                        u
 |||||||||    |||||| ||||||  ||||||||| ||||||||||                        g
 cuucgauag    agacuC CCUUAC  CGGACCAGG Ucuagggugc                        u
a         ----      C      UU         C          cuacucuccuuacuuuuuggaacg 

>osa-MIR166b (-87.27)   [osa-miR166b:168-188]

           cau    a        uu      cu     -    uuuua    -     -      -   --     cu     --c    uccuagcuu    u 
gggagccuuuu   uuug ggggaaug  gucugg  cgggg cuac     auuu cucuc ucuuuu gau  aucuu  uuucu   gauc         gauc u
|||||||||||   |||| ||||||||  ||||||  ||||| ||||     |||| ||||| |||||| |||  |||||  |||||   ||||         ||||  
cccucgggaag   aaac CCCCUUAC  CGGACC  GCUcu gaug     uaga gagag agagaa cug  uagaa  aaaga   cuag         cuag u
           -ac    c        UU      AG     a    -ucug    u     u      a   ac     --     auu    cuaaacucu    u 

>osa-MIR166c (-73.40)   [osa-miR166c:91-111]

g        -----        uu                aa    g   ggaauggcggauuc 
 gcaguuga     ggggaaug  gucugguccgagaccu  cacc ggc              a
 ||||||||     ||||||||  ||||||||||||||||  |||| |||               
 ugucaacu     CCCCUUAC  CGGACCAGGCUuuggg  gugg ucg              g
u        caacc        UU                gg    a   aacgaaucgacguc 

>osa-MIR166d (-55.50)   [osa-miR166d:91-111]

ga      uuc    u          uu      cu      g  uggagaaaccucugaucga 
  agcuuu   acuu gaggggaaug  gucugg  cgaggu ca                   u
  ||||||   |||| ||||||||||  ||||||  |||||| ||                    
  ucgaaa   ugaa cuCCCCUUAC  CGGACC  GCUcua gu                   c
cc      ---    -          UU      AG      -  cagagaugucuaguuugga 

>osa-MIR166e (-62.20)   [osa-miR166e:108-128]

          u      uu         a  gc   uu     g  u   uuuu    guuua      ca 
uguuucuggg ggaaug  gucugguuc ag  ccc  aggau ug gau    gaug     ugcauu  u
|||||||||| ||||||  ||||||||| ||  |||  ||||| || |||    ||||     ||||||   
auagagacuC CCUUAC  CGGACCAAG Uc  ggg  uucua gc cua    cuac     gcguag  c
          C      UU         C  uu   -u     g  u   ---u    ---aa      uu 

>osa-MIR166f (-59.80)   [osa-miR166f:72-92]

-    cauc        a      uc      c          a    a   gu 
 cgau    uuguugag ggaaug  gucugg cugagaucgu ccac gug  g
 ||||    |||||||| ||||||  |||||| |||||||||| |||| |||  g
 gcug    aacaacuC CCUUAC  CGGACC GGCUcuggca ggug cac  g
g    -cuc        C      UU      A          -    -   au 

>osa-MIR167a (-65.30)   [osa-miR167a:14-34] [osa-miR167a*:110-131]

         u      A    C  -            uc     a  cg    --ug      uac    g 
uagugugaa gagUGA GCUG CA GCAUGAUCUAgc  ugauu au  gcac    uuggcg   aguc a
||||||||| |||||| |||| || ||||||||||||  ||||| ||  ||||    ||||||   ||||  
gucacacuu UUUACU CGAC GU CGUACUAgauug  acuaa ug  ugug    gacugc   ucag u
         c      C    A  A            uc     a  ug    ucua      uaa    u 

>osa-MIR167b (-82.50)   [osa-miR167b:18-38]

        g  -a   -c         - -               --u  ag  -a    auc   -      c    g    ga 
gugcccaa ag  aag  gUGAAGCUG C CAGCAUGAUCUAacu   gc  ac  agaa   agc ucagcu gcug uuuc  a
|||||||| ||  |||  ||||||||| | |||||||||||||||   ||  ||  ||||   ||| |||||| |||| ||||   
cacggguu uc  uuc  cacuuugac g gucguacuagauugg   ug  ug  ucuu   ucg agucga cggc gaag  c
        g  cc   cu         a u               uag  ca  ag    -cu   g      u    g    ga 

>osa-MIR167c (-80.60)   [osa-miR167c:17-37]

u      ----     c      A      --             ucuga       a      ------gu    -----     cug 
 guccaa    gggaa gagUGA GCUGCC  AGCAUGAUCUAgc     augauca caagau        gcuc     ccaca   c
 ||||||    ||||| |||||| ||||||  |||||||||||||     ||||||| ||||||        ||||     |||||   c
 cggguu    cccuu uucacu cgacgg  ucguacuggaucg     uacuggu guucug        cgag     ggugu   u
a      guua     c      c      cg             uuccg       -      aucguugu    uucua     ccu 

>osa-MIR169a (-99.60)   [osa-miR169a:38-58]

    ---   -     g    u    u   a     u    C         UG          c   c   cu       --a       
cgcc   ggc ggccu acau ggga cgg ggcca ggug AGCCAAGGA  ACUUGCCGAu gau gau  aucuaug   agcuaa 
||||   ||| ||||| |||| |||| ||| ||||| |||| |||||||||  |||||||||| ||| |||  |||||||   ||||| g
gcgg   ccg ccgga ugua uccu guc ccggu cuac ucgguucuu  ugaacgguua cua cua  uagguac   ucgauc 
    ugu   g     a    c    c   c     u    a         gu          a   c   cc       cgg       

>osa-MIR171a (-46.00)   [osa-miR171a:67-87]

---    a  gc          a         c   g           ag 
   ggaa ga  gauauuggug gguucaauc gau auugguuuuac  c
   |||| ||  |||||||||| ||||||||| ||| |||||||||||  a
   ccuu cu  CUAUAACCGC CCGAGUUAG cua ugacuaaaaug  g
ucu    -  --          G         U   -           gu 

>hsa-mir-155 (-29.70)   [hsa-miR-155:4-26] [hsa-miR-155*:43-64]

              C   A        -u   c 
cugUUAAUGCUAAU GUG UAGGGGUu  uug c
|||||||||||||| ||| ||||||||  |||  
gACAAUUACGAUUA UAC AUCCUCag  aac u
              -   -        uc   c 

>hsa-mir-181b-2 (-35.00)   [hsa-miR-181b:16-38]

cuga   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUu ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     guaaguaac  uagucacucaa cu  g
acaa   a     caaac         --           -  aa 

>mmu-mir-107 (-41.10)   [mmu-miR-107:52-74]

-             --c    u  u           c   u   a 
 uucucugugcuuu   agcu cu uacaguguugc uug ggc u
 |||||||||||||   |||| || ||||||||||| ||| ||| g
 gagagacacgaaA   UCGG GA AUGUUACGACG Aac uug g
c             CUA    -  C           -   -   a 

>mmu-mir-10a (-32.39)   [mmu-miR-10a:22-44] [mmu-miR-10a*:63-84]

-----gacc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguAUA GGGG AUCUA GCUUAAACac       u
acucgccuc   aau    uu        A    -     U          ugguguu 

>mmu-mir-17 (-39.10)   [mmu-miR-17:14-36] [mmu-miR-17*:51-72]

     a       -CA       UA  G     GUAGu    u 
gucag auaaugu   AAGUGCU  CA UGCAG     gaug g
||||| |||||||   |||||||  || |||||     ||||  
caguc uauuacG   UUCACGG  GU ACGUC     cuac u
     g       AUG       GA  G     ---Au    g 

>mmu-mir-19a (-39.10)   [mmu-miR-19a*:13-34] [mmu-miR-19a:49-71]

    c  u                 --      ---    ag 
gcag cc cuguUAGUUUUGCAUAG  UUGCAC   UACa  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>mmu-mir-25 (-37.80)   [mmu-miR-25:52-73]

    a ug   ag    g     uu g     u   --  ac 
ggcc g  uug  aggc gagac  g gcaau gcu  gg  g
|||| |  |||  |||| |||||  | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg  cc  u
    c gu   AG    G     UU A     -   gu  cg 

>mmu-mir-28 (-38.10)   [mmu-miR-28:14-35] [mmu-miR-28*:54-75]

   c   a     A  G             ----UU     gcc 
ggu ccu ccuuc AG AGCUCACAGUCUA      GAGuu   u
||| ||| ||||| || |||||||||||||      |||||    
uca gga gggAG UC UCGAGUGUUAGAU      cuuag   u
   c   c     G  G             CACccu     ucu 

>mmu-mir-32 (-31.90)   [mmu-miR-32:6-27]

        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCAu g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuuuuaua  gugug ugauuuaacgua c  cg c
        gu     -            a uc  g 

>mmu-mir-100 (-28.80)   [mmu-miR-100:13-34]

    -uu c    A   CG    UC   A      c  au 
ccug   g caca ACC  UAGA  CGA CUUGUG ug  u
||||   | |||| |||  ||||  ||| |||||| ||   
ggau   c gugu ugg  aucu  guu gaacac ac  c
    ugu u    a   au    gu   c      -  gu 

>mmu-mir-139 (-34.90)   [mmu-miR-139-5p:7-28] [mmu-miR-139-3p:43-64]

gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUCCAGu u  c
   ||||||| ||| || |||||||||||| |  u
   auGAGGU GUC CG GCGCAGAGGUcg a  c
-ca       U   C  -            g gg 

>mmu-mir-200c (-31.60)   [mmu-miR-200c*:5-26] [mmu-miR-200c:45-67]

  cu    -      A        U   u   gg 
cc  CGUC UUACCC GCAGUGUU GGg gcu  u
||  |||| |||||| |||||||| ||| |||  u
gg  GUAG AAUGGG CGUCAUAA cuc uga  g
  AG    U      C        U   -   gg 

>mmu-mir-210 (-48.80)   [mmu-miR-210:66-87]

cc  gg -a  cc u     cu    a     a   cc   -      c  c   gc 
  gg  c  gu  c ccagg  cagg cagcc cug  cac cgcaca ug guu  u
  ||  |  ||  | |||||  |||| ||||| |||  ||| |||||| || |||   
  cc  g  cg  g ggucc  gucu GUCGG GAC  GUG GCGUGU ac cag  c
--  aa cg  ac -     cu    A     C   -A   U      C  c   gc 

>mmu-mir-212 (-41.30)   [mmu-miR-212:56-77]

    -  c   c   -ca  u     cu      c      ccc  g 
gggc ag gcg cgg   cc uggcu  agacug uuacug   gg c
|||| || ||| |||   || |||||  |||||| ||||||   ||  
cccg uc cgc gcc   GG ACUGA  UCUGAC AAUgac   cc c
    g  -   a   ACC  C     CC      -      -uu  g 

>mmu-mir-181a-1 (-29.22)   [mmu-miR-181a:14-36] [mmu-miR-181a-1*:54-75]

    -   uc  u A   U      CU       A    ggaau 
gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
|||| |||  || | ||| ||||||  ||||||| ||||     c
ccaa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
    u   ua  C A   U      --       -    aauaa 

>mmu-mir-214 (-67.62)   [mmu-miR-214*:30-51] [mmu-miR-214:71-92]

ggccu      acaga           u          ACA            aacau 
     ggcugg     guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           U          CAC            cacuc 

>mmu-mir-216a (-30.00)   [mmu-miR-216a:7-28]

u    u         CU   A        --   uc 
 uggu UAAUCUCAG  GGC ACUGUGAg  aug  c
 |||| |||||||||  ||| ||||||||  |||  c
 aucg auuaggguc  cug ugacacuc  uac  u
a    u         -u   g        cu   ua 

>mmu-mir-218-1 (-38.70)   [mmu-miR-218:25-45] [mmu-miR-218-1*:64-85]

gugauaaugga   a   u      U         CU        ---g   gcg 
           gcg gau uucugU GUGCUUGAU  AACCAUGU    cuu   a
           ||| ||| |||||| |||||||||  ||||||||    |||   g
           cgc cug aaggua CACGAACUG  UUGGUACA    gag   g
acaucuuucga   a   c      C         CC        AAaa   uau 

>mmu-mir-218-2 (-44.50)   [mmu-miR-218:25-45] [mmu-miR-218-2*:67-88]

gac   uu -cc   gg       uUU         CU        gguggaacga  g 
   cag  g   gcg  gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||  |   |||  |||||||   |||||||||  ||||||||          ||  
   guc  c   cgc  cgaaagG   CACGAACUG  UUGGUACa          gc a
-ac   cu ucu   ua       CGC         UC        --------ag  a 

>mmu-mir-219-1 (-60.00)   [mmu-miR-219:21-41]

---------ccguccc    c       cU   U     A            a   ucu 
                gggc gcggcuc  GAU GUCCA ACGCAAUUCUcg guc   g
                |||| |||||||  ||| ||||| |||||||||||| |||   g
                cccg cgccgag  cug caggu ugcguugagagc cgg   c
gggggagcuccaaacc    c       cc   -     c            -   ccu 

>mmu-mir-223 (-45.20)   [mmu-miR-223:68-89]

u    ccaucu   -gu        cc u              gaguug         u 
 cugg      gca   gucacgcu  g guauuugacaagcu      gacacucug g
 ||||      |||   ||||||||  | ||||||||||||||      ||||||||| u
 gacu      cgu   cgguguga  C CAUAAACUGUUUGA      CUGUgagau g
-    ---auc   acu        AC C              ------         g 

>mmu-mir-320 (-44.80)   [mmu-miR-320:48-69]

gccucg    --   ---c         uu       c      g 
      ccgc  ccu    cgccuucuc  cccgguu uucccg a
      ||||  |||    |||||||||  ||||||| ||||||  
      ggug  gga    GCGGGAGAG  GGGUCGA AAgggc g
-----g    ua   aaaA         UU       A      u 

>mmu-mir-26a-2 (-44.90)   [mmu-miR-26a:14-35]

g     gg ug  UU         C          --   uc 
 gcugc  c  ga  CAAGUAAUC AGGAUAGGCU  gug  c
 |||||  |  ||  ||||||||| ||||||||||  |||   
 cgacg  g  cu  guucauuag ucuuguccgg  uac  g
g     ga gu  uu         u          ag   cu 

>mmu-mir-33 (-33.60)   [mmu-miR-33:6-26] [mmu-miR-33*:46-67]

              A UU         guucu  c 
cugugGUGCAUUGU G  GCAUUGCAu     gg a
|||||||||||||| |  |||||||||     || a
ggCACUACGUGACA C  UGUAACgug     cc u
              C UU         ----u  a 

>mmu-mir-211 (-57.20)   [mmu-miR-211:26-47]

-    -u    ccu      ug               CA     U    ag  cu 
 cugc  ugga   gugacc  ugggcUUCCCUUUGU  UCCUU GCCU  gc  c
 ||||  ||||   ||||||  |||||||||||||||  ||||| ||||  ||   
 gacg  aucu   cacugg  acucggggggaaacg  aggaa cgga  ug  u
a    uc    --c      ug               ac     -    -g  ag 

>mmu-mir-221 (-44.00)   [mmu-miR-221:60-82]

a       cugg   a    -  ug   u         auuu    -   u 
 uccaggu    ggc ugaa cc  gca acaauguag    cugu guu g
 |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
 aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
a       ----   g    U  GU   C         ----    a   a 

>mmu-mir-222 (-41.20)   [mmu-miR-222:49-69]

-  c    u              -     auc   ucuu 
 cc ucag ggcucaguagccag uguag   cug    u
 || |||| |||||||||||||| |||||   |||    g
 gg gguc cUGGGUCAUCGGUC ACAUC   gac    g
c  u    u              U     GAc   uaau 

>mmu-mir-224 (-37.10)   [mmu-miR-224:8-28]

       UA         U   U      a u   ug  uu 
gggcuuu  AGUCACUAG GGU CCGUUu g aga  gu  g
|||||||  ||||||||| ||| |||||| | |||  ||   
cccgaaa  ucagugauc ccg gguaaa c uuu  ua  u
       ca         -   u      a -   gu  cg 

>mmu-mir-29b-2 (-31.24)   [mmu-miR-29b:52-74]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuUU UGACUAAAGU UACCAC GA Ucua      u
         G          U      -  -    uguuuc 

>mmu-mir-199a-2 (-43.40)   [mmu-miR-199a-5p:31-53] [mmu-miR-199a-3p:70-91]

uggaa   uca  aga    -    c   gcC       U        C   --UCa  ac 
     gcu   gg   uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     |||   ||   |||| |||| |||   ||||||| |||||||| |||     ||   
     cga   cc   ggga cggg cag   GGUUACA GUCUGAUG ACA     cc  a
----a   ---  ---    a    u   AUU       C        -   uguug  gu 

>mmu-mir-199b (-42.90)   [mmu-miR-199b*:26-48] [mmu-miR-199b:65-86]

cca    -auacc    cu  -     C       U        C   U  ----  a 
   gagg      ucca  cc gucua CCAGUGU UAGACUAC UGU Ca    gg c
   ||||      ||||  || ||||| ||||||| |||||||| ||| ||    ||  
   cucc      gggu  gg cggAU GGUUACA GUCUGAUG ACA gu    cc u
-gg    cagauu    cg  u     U       C        -   u  uaaa  c 

>mmu-mir-135a-2 (-34.80)   [mmu-miR-135a:23-45]

a  uaaa     ucua   c            U            -u gua 
 ga    uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA  c   a
 ||    |||||    ||| |||||||||||| ||||||||||||  |    
 cu    aagug    cau aaguaccgaagg uagggauguacu  g   u
a  -uaa     -uua   a            -            cu aaa 

>mmu-mir-124-1 (-35.92)   [mmu-miR-124*:14-35] [mmu-miR-124:53-72]

a      uc   cC        A   GA        uaaau 
 ggccuc  ucu  GUGUUCAC GCG  CCUUGAUu     g
 ||||||  |||  |||||||| |||  ||||||||     u
 ucgggg  aga  CGUAAGUG CGC  GGAAUuaa     c
g      ua   aC        G   AC        cauac 

>mmu-mir-124-2 (-45.70)   [mmu-miR-124*:25-46] [mmu-miR-124:62-81]

a     au   ----  a         cC        A   GA        uaau 
 ucaag  cag    ag cucugcucu  GUGUUCAC GCG  CCUUGAUu    g
 |||||  |||    || |||||||||  |||||||| |||  ||||||||    u
 aguuc  guc    uc gaggcgaga  CGUAAGUG CGC  GGAAUuaa    c
a     ac   ggca  c         aC        G   AC        caua 

>mmu-mir-19b-1 (-38.02)   [mmu-miR-19b:54-76]

    ggu                 -  -      uc    uguau 
cacu   cuaugguuaguuuugca gg uuugca  cagc     a
||||   ||||||||||||||||| || ||||||  ||||     a
gugg   ggugucAGUCAAAACGU CC AAACGU  GUcg     u
    --u                 A  U      --    ucuua 

>mmu-mir-92a-1 (-35.30)   [mmu-miR-92a:50-70]

---cu   uac            uu  c           uuu 
     uuc   acagguugggau  gu gcaaugcugug   c
     |||   ||||||||||||  || |||||||||||    
     gag   uGUCCGGCCCUG  CA CGUUAUgguau   u
gguuu   --u            UU  -           guc 

>mmu-mir-9-1 (-42.00)   [mmu-miR-9:16-38] [mmu-miR-9*:55-76]

c       guug   UC               G      u  ug 
 gggguug    uua  UUUGGUUAUCUAGCU UAUGAg gg  u
 |||||||    |||  ||||||||||||||| |||||| ||  g
 ccccaau    aaU  AAGCCAAUAGAUCGA AUAcuu cu  g
a       -aaa   GA               A      -  ga 

>mmu-mir-9-3 (-41.10)   [mmu-miR-9:16-38] [mmu-miR-9*:55-76]

g    cc       -  C               G     gu  ca 
 gagg  cguuucu cU UUUGGUUAUCUAGCU UAUGA  gc  c
 ||||  ||||||| || ||||||||||||||| |||||  ||   
 cucu  guaaaga GA AAGCCAAUAGAUCGA AUAcu  cg  a
a    ca       U  -               A     gc  ag 

>mmu-mir-138-1 (-45.60)   [mmu-miR-138:23-45] [mmu-miR-138*:61-82]

cucua   ug    u   -  a AG             UCA       gc a 
     gca  gugu gug gg c  CUGGUGUUGUGAA   GGCCGuu  c a
     |||  |||| ||| || |  |||||||||||||   |||||||  | u
     cgu  cacg cac cc G  GACCACAACACUU   UCGGCaa  g c
--gaa   --    u   a  - -G             -CA       ga a 

>mmu-mir-181b-1 (-32.70)   [mmu-miR-181b:12-34]

a       aucAA         CUG          gaa  g 
 ggucaca     CAUUCAUUG   UCGGUGGGUu   cu u
 |||||||     |||||||||   ||||||||||   ||  
 ccggugu     guaaguaac   agucacucga   ga g
-       -caac         --a          aaa  u 

>mmu-mir-181c (-45.30)   [mmu-miR-181c:17-38]

g   a  g       gAA        CU       A     ggca 
 cca gg uuugggg   CAUUCAAC  GUCGGUG GUuug    g
 ||| || |||||||   ||||||||  ||||||| |||||    c
 ggu cc gagcccc   gugaguug  cagcuac caaac    u
a   -  g       -ag        -c       -     agac 

>mmu-mir-125b-1 (-30.70)   [mmu-miR-125b-5p:15-36] [mmu-miR-125b-3p:55-76]

ugcgcuccccu   UC  UG   C           Au     c 
           cag  CC  AGA CCUAACUUGUG  guuua c
           |||  ||  ||| |||||||||||  ||||| g
           gUC  GG  UCU GGAUUGGGCAc  uaaau u
-----------   GA  GU   C           -c     u 

>mmu-mir-128-2 (-37.20)   [mmu-miR-128:48-68]

       a          aug      aa    g gag 
caguggg aggggggccg   cacugu  gaga u   u
||||||| ||||||||||   ||||||  |||| |    
gucaucc UUUCUCUGGC   GUGACA  CUcu g   a
       c          CAA      --    g acg 

>hsa-mir-128-2 (-39.40)   [hsa-miR-128:52-72]

u ug       a          aua      ac    g gag 
 g  caguggg aggggggccg   cacugu  gaga u   u
 |  ||||||| ||||||||||   ||||||  |||| |    
 u  gucaucc UUUCUCUGGC   GUGACA  CUcu g   a
c gu       c          CAA      --    g acg 

>mmu-mir-7a-1 (-47.10)   [mmu-miR-7a:24-46] [mmu-miR-7a*:66-87]

--u    u  u     a  u        A     A       U      --     a 
   ugga gu ggccu gu cugugUGG AGACU GUGAUUU GUUGUu  uuuag u
   |||| || ||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu ca ccgga ca gguAUACC UCUGA CACUAAA CAACag  aaauc a
gac    c  -     -  c        G     -       -      ca     a 

>mmu-mir-7a-2 (-41.70)   [mmu-miR-7a:19-41]

-  ucg       c    u   A     A U     U       ug cu 
 gg   ggccagc ccgu UGG AGACU G GAUUU GUUGUug  u  c
 ||   ||||||| |||| ||| ||||| | ||||| |||||||  |   
 cu   cuggucg ggua acc ucuga c cugaa caacaac  a  u
a  uua       u    c   g     c -     -       cu ug 

>mmu-mir-7b (-36.60)   [mmu-miR-7b:30-52]

aggagcggaguacgu   -   g       U  AAGAC         U      c  au 
               gag cca ugcuaug GG     UUGUGAUUU GUUGUu ug  a
               ||| ||| ||||||| ||     ||||||||| |||||| ||   
               cuc ggu gcgauac cc     gacacugaa caacag au  u
-----uuccacuauc   a   -       u  -gacc         -      u  ag 

>mmu-mir-217 (-37.10)   [mmu-miR-217:34-56]

aaacauagucauuaca    uu       c  a  C     C         -CU    aag 
                guuu  gauguug ag UA UGCAU AGGAACUGA   GGAu   a
                ||||  ||||||| || || ||||| |||||||||   ||||    
                caaa  cuacgac uc gu acgua uccuugacu   ccua   c
--------------aa    -u       u  c  u     a         acc    auu 

>hsa-mir-194-2 (-50.00)   [hsa-miR-194:15-36] [hsa-miR-194*:51-72]

-      c      cU         A      G    agu   c 
 ugguuc cgcccc  GUAACAGCA CUCCAU UGGA   gcc a
 |||||| ||||||  ||||||||| |||||| ||||   |||  
 accggg gcgggG  UAUUGUCGU GGGGUG ACCu   ugg c
g      a      UC         C      -    ---   u 

>mmu-mir-194-2 (-48.30)   [mmu-miR-194:16-37]

g     c       cU         A      G    agu   c 
 uggcu ccacccu  GUAACAGCA CUCCAU UGGA   gcc a
 ||||| |||||||  ||||||||| |||||| ||||   |||  
 aucgg ggugggg  uauugucgu ggggug accu   ugg c
g     c       uc         c      -    ---   u 

>hsa-mir-106b (-44.90)   [hsa-miR-106b:12-32] [hsa-miR-106b*:52-73]

     c     -UA       G       A A    --  uc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagu  gg  c
||||| |||||   ||||||| ||||||| | ||||  ||   
ggacg ccuCG   UUCAUGG UGUCACG C aucg  cc  u
     a     UCG       G       C -    ug  uc 

>hsa-mir-29c (-35.40)   [hsa-miR-29c*:16-37] [hsa-miR-29c:54-75]

a         -  ggc           UCC       ---     u 
 ucucuuaca ca   UGACCGAUUUC   UGGUGUU   Cagag c
 ||||||||| ||   |||||||||||   |||||||   ||||| u
 gggggaugu gu   AUUGGCUAAAG   ACCACGA   guuuu g
a         a  ---           UUU       Ucu     u 

>hsa-mir-30c-1 (-35.40)   [hsa-miR-30c:17-39] [hsa-miR-30c-1*:56-77]

a     cu    ugu U       U   ACA         ---g  a 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    ug g
 |||||  ||||   | ||||||| |||   |||||||||    ||  
 gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ac c
a     --    uuC U       U   --A         ugga  u 

>hsa-mir-200a (-47.50)   [hsa-miR-200a*:16-37] [hsa-miR-200a:54-75]

c    - c   g        -            -----------     A 
 cggg c ccu ugagCAUC UUACCGGACAGU           GCUGG u
 |||| | ||| |||||||| ||||||||||||           ||||| u
 gccc g gga acuUGUAG AAUGGUCUGUCA           cgacc u
c    a u   a        C            CAAUcucaguu     c 

>hsa-mir-302a (-33.40)   [hsa-miR-302a*:6-28] [hsa-miR-302a:44-66]

   c    U         U           gaa 
cca cACU AAACGUGGA GUACUUGCUuu   a
||| |||| ||||||||| |||||||||||   c
ggu GUGG UUUGUACCU CGUGAAUgaag   u
   A    U         U           aaa 

>hsa-mir-101-2 (-31.40)   [hsa-miR-101:49-69]

  ug  c                    c a    guaua 
ac  uc uuuuucgguuaucaugguac g ugcu     u
||  || |||||||||||||||||||| | ||||      
ug  gg aagAAGUCAAUAGUGUCAUG C AUgg     c
  gu  u                    A -    aaagu 

>hsa-mir-219-2 (-49.90)   [hsa-miR-219-5p:19-39] [hsa-miR-219-2-3p:62-83]

a   a       c     U   U     AA           uac a  c 
 cuc ggggcuu gccac GAU GUCCA  CGCAAUUCUug   g gu u
 ||| ||||||| ||||| ||| |||||  |||||||||||   | || g
 ggg ccucgag cggUG CUA CAGGU  GUGUUAAGAgc   c cg c
-   -       u     U   -     CG           caa -  g 

>mmu-mir-219-2 (-48.40)   [mmu-miR-219:19-39]

a   a       c     U   U     AA           uac a  c 
 cuc ggggcuu gccac GAU GUCCA  CGCAAUUCUug   g gu u
 ||| ||||||| ||||| ||| |||||  |||||||||||   | || g
 ggg ccucgag uggug cua caggu  guguuaagagc   c cg c
-   -       u     u   -     cg           caa -  g 

>hsa-mir-34b (-33.80)   [hsa-miR-34b*:13-35] [hsa-miR-34b:50-71]

     cg    -gUA       UCA    C        -  g 
gugcu  guuu    GGCAGUG   UUAG UGAUUGua cu u
|||||  ||||    |||||||   |||| |||||||| || g
cacgg  caaa    CCGUCAC   AAUC ACUAACau gg g
     aa    acUA       CUC    -        u  u 

>hsa-mir-34c (-30.00)   [hsa-miR-34c-5p:13-35] [hsa-miR-34c-3p:46-67]

     ag     A   A    A     C      C  a 
agucu  uuacu GGC GUGU GUUAG UGAUUG ua u
|||||  ||||| ||| |||| ||||| |||||| ||  
uuaga  aauGG CCG CACA CAAUC ACUAAc au a
     aa     A   G    C     -      c  g 

>hsa-mir-299 (-40.50)   [hsa-miR-299-5p:7-28] [hsa-miR-299-3p:39-60]

     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucUU GCCAAAUGGUAGGGUGUAUgua  a
     C                      ua 

>hsa-mir-301a (-32.80)   [hsa-miR-301a:51-73]

a     aa  a     c    ---u          ----a       
 cugcu  cg augcu ugac    uuauugcacu     cuguac 
 |||||  || ||||| ||||    ||||||||||     ||||| u
 gacga  gu uaCGA ACUG    GAUAACGUGA     gacauu 
g     aa  c     A    UUAU          Cgauc       

>hsa-mir-99b (-30.00)   [hsa-miR-99b:7-28] [hsa-miR-99b*:45-66]

     cC         AC   C    C - -   c 
ggcac  ACCCGUAGA  CGA CUUG G g ggc u
|||||  |||||||||  ||| |||| | | |||  
cuguG  UGGGUGUCU  GCU GAAC c c ccg u
     CC         GU   C    a a g   c 

>hsa-mir-296 (-41.40)   [hsa-miR-296-5p:14-34] [hsa-miR-296-3p:48-69]

  ga      ca       C  C         G   ugc 
ag  cccuuc  gAGGGCC CC CUCAAUCCU Uug   c
||  ||||||  ||||||| || ||||||||| |||   u
uc  gggaag  CUCUCGG GG GGGUUGGGA Gac   a
  uc      uC       A  U         -   uua 

>hsa-mir-130b (-36.40)   [hsa-miR-130b*:13-33] [hsa-miR-130b:51-72]

      c    cA       CC         A  --a   g 
ggccug ccga  CUCUUUC  UGUUGCACU Cu   uag c
|||||| ||||  |||||||  ||||||||| ||   |||  
cuggac ggcU  GGGAAAG  GUAACGUGA ga   guc c
      u    AC       UA         C  agg   g 

>hsa-mir-30e (-53.00)   [hsa-miR-30e:17-38] [hsa-miR-30e*:59-80]

g        uu  ua            UU           g aag u 
 ggcagucu  gc  cUGUAAACAUCC  GACUGGAAGcu u   g g
 ||||||||  ||  ||||||||||||  ||||||||||| |   |  
 ccgucgga  cg  GACAUUUGUAGG  CUGACUUUCga g   c u
a        --  gC            --           g aga u 

>hsa-mir-26a-2 (-42.24)   [hsa-miR-26a:14-35] [hsa-miR-26a-2*:52-73]

      gg ug  UU         C          guuucc 
ggcugu  c  ga  CAAGUAAUC AGGAUAGGCU      a
||||||  |  ||  ||||||||| ||||||||||       
ucgacg  g  CU  GUUCAUUAG UCUUAUCCgg      u
      ga gu  UU         U          aguguc 

>cbr-mir-72 (-50.50)   [cbr-miR-72:17-35]

u  a   --   cga  uA    -     U   AU      a   aaaucagaaaucgaaau 
 gg cuc  gcc   gc  GGCA GAUGU GGC  AGCuga ugc                 u
 || |||  |||   ||  |||| ||||| |||  |||||| |||                 c
 cc gag  cgg   cg  ccgu cuaca ccg  ucgacu gcg                 g
a  a   uu   aug  ua    g     -   cu      c   cgcuuuaaguuugaaaa 

>cel-mir-353 (-39.90)   [cel-miR-353:33-53]

uguugaaguauugcaaaagcaaa    ggg    AUU C     --           u          
                       ggac   caCA   G CAUGU  GUUGGUAUUau gcuucaagu 
                       ||||   ||||   | |||||  ||||||||||| |||||||| u
                       ccug   gugu   c guacg  uaacuauaaug cgaaguuua 
----------------------g    -aa    gcu u     aa           u          

>cel-mir-354 (-33.02)   [cel-miR-354:80-100]

         cuaagcaccuu  u     u       -    ucc  cuc  c   caua 
cagagccga           gg gcggc gcagacg ggua   gg   ga guu    c
|||||||||           || ||||| ||||||| ||||   ||   || |||     
guuuugguu           CC CGUCG UGUUUGU CCAu   cc   cu cag    a
         ---------aU  U     U       U    uuu  uuu  u   cacu 

>cel-mir-355 (-36.80)   [cel-miR-355:23-43]

-----aauaa      ---ga     a    U         -CU        ---ag  a 
          ugucaa     auuga uggU UGUUUUAGC   GAGCUAUG     uc u
          ||||||     ||||| |||| |||||||||   ||||||||     ||  
          gcaguu     uaacu accg acaaaaucg   uucgauac     ag c
aguuuuugaa      aauuc     a    u         uuc        guaua  g 

>cel-mir-356 (-29.20)   [cel-miR-356:26-46]

-uaaaguu    ugag   a       U   CA   -  -   A    Aucaa  ua 
        uccu    aac auguggU GAG  ACG CG AAC AAUC     ug  a
        ||||    ||| ||||||| |||  ||| || ||| ||||     ||  a
        agga    uug uacacca cuc  ugc gc uug uuag     ac  u
aagacuuu    -uga   c       -   ug   a  a   c    --gcg  uu 

>cel-mir-357 (-43.02)   [cel-miR-357:65-87]

a   --ug       cacca     uc   a     -   c    a     gaaca 
 cgc    uacuacu     gcgga  ccu caacg cug gcau ugcau     c
 |||    |||||||     |||||  ||| ||||| ||| |||| |||||     a
 gcg    augauga     cgcuU  GGA GUUGC GAC CGUA AUgua     a
c   uaaa       -caua     GA   C     U   -    A     aaagu 

>cel-mir-358 (-34.11)   [cel-miR-358*:20-42] [cel-miR-358:67-87]

---aaac    --     cug c     -   C   C  U    C    aaacuuac 
       ucgc  gacgg   g gACCU GGC AGG AU CCAA UGUc        a
       ||||  |||||   | ||||| ||| ||| || |||| ||||        a
       agcg  uugcc   c CUGGA CUG UCC UA GGUU acag        a
uugcuua    ac     uaa u     A   -   C  U    A    cucuuucg 

>cel-mir-359 (-39.40)   [cel-miR-359:62-83]

--------aa  -    uu   a       -        u  c  a    u      ccu 
          ug cucc  gaa uuucaau cguuagag aa ac cagu acacga   c
          || ||||  ||| ||||||| |||||||| || || |||| ||||||   a
          ac gagg  cuu gaaguuA GCAGUCUC UU UG GUCA Ugugcu   u
guugguuuua  a    -u   -       A        U  C  -    C      aac 

>cel-mir-360 (-42.60)   [cel-miR-360*:26-46] [cel-miR-360:65-85]

cau   -guu       -au             C  UU          a   gcaa 
   ucu    aggaagc   caaugugUUGUGA CG  GUUACGGUCA uuu    a
   |||    |||||||   ||||||||||||| ||  |||||||||| |||     
   gga    ucuuuug   guuacauAACACU GC  UAAUGCCAGU aaa    u
--u   aacc       cuu             U  CC          a   aagu 

>hsa-mir-361 (-32.30)   [hsa-miR-361-5p:6-27] [hsa-miR-361-3p:45-67]

     UU         --U  A    U     auaa 
ggagc  AUCAGAAUC   CC GGGG ACuuu    u
|||||  |||||||||   || |||| |||||     
cuucg  UAGUCUUAG   GG CCCC Ugaaa    u
     UU         UGU  A    C     aacu 

>mmu-mir-361 (-29.50)   [mmu-miR-361:6-27]

     UU         --U  A    U    agua 
gaagc  AUCAGAAUC   CC GGGG ACuu    u
|||||  |||||||||   || |||| ||||     
cuuug  uagucuuag   gg cccc ugaa    u
     uu         ugu  a    c    aagu 

>hsa-mir-362 (-31.70)   [hsa-miR-362-5p:5-28] [hsa-miR-362-3p:42-63]

c             ACC        -A Ug  a 
 uugAAUCCUUGGA   UAGGUGUG  G  cu u
 |||||||||||||   ||||||||  |  || u
 aACUUAGGAACUU   AUCCACAC  c  ga u
a             ---        AA gu  c 

>mmu-mir-362 (-29.30)   [mmu-miR-362-5p:5-28] [mmu-miR-362-3p:42-63]

cuc           ACC        AA   u  u 
   gAAUCCUUGGA   UAGGUGUG  Ugc gc u
   |||||||||||   ||||||||  ||| ||  
   CUUAGGAACUU   GUCCACAC  Acg ug c
aaA           ---        -A   -  a 

>hsa-mir-363 (-25.40)   [hsa-miR-363*:7-28] [hsa-miR-363:50-71]

u   gu         CA  A         -----g   a 
 guu  CGGGUGGAU  CG UGCAAUUUu      aug g
 |||  |||||||||  || |||||||||      ||| u
 caa  GUCUACCUA  GC ACGUUAAaa      uac a
c   AU         UG  -         agagga   u 

>mmu-mir-363 (-22.30)   [mmu-miR-363:50-71]

u   au        -  a  a         gg  ggug 
 guu  caggugga ac cg ugcaauuuu  uu    u
 |||  |||||||| || || |||||||||  ||     
 caa  GUCUACCU UG GC ACGUUAAaa  ag    a
c   AU        A  -  -         gg  gaua 

>hsa-mir-365-1 (-35.40)   [hsa-miR-365:56-77]

acc      aa        ac           ----   -   uuu 
   gcaggg  aaugaggg  uuuugggggca    gau gug   c
   ||||||  ||||||||  |||||||||||    ||| |||   c
   cguucu  uUAUUCCU  AAAAUCCCCGU    cua cac   a
--a      cg        -A           AAUa   u   cuu 

>mmu-mir-365-1 (-35.36)   [mmu-miR-365:56-77]

acc      aa        ac           ga    uuucca 
   gcaggg  aaugaggg  uuuugggggca  ugug      u
   ||||||  ||||||||  |||||||||||  ||||      u
   cguucu  uUAUUCCU  AAAAUCCCCGU  AUac      c
--a      cg        -A           -A    uaucgc 

>hsa-mir-365-2 (-40.10)   [hsa-miR-365*:29-50] [hsa-miR-365:68-89]

agaguguucaa g   --       a        AC   C       -----    U   u 
           g aca  gcaagaa aaugAGGG  UUU AGGGGCA     GCUG guu u
           | |||  ||||||| ||||||||  ||| |||||||     |||| |||  
           c ugu  cguucuu uUAUUCCU  AAA UCCCCGU     ugac cag c
-----gggcua g   ga       g        AA   -       AAUac    u   u 

>hsa-mir-302b (-29.10)   [hsa-miR-302b*:11-32] [hsa-miR-302b:47-69]

     cuuca   UU          UG   U  guga 
gcucc     ACU  AACAUGGAAG  CUU Cu    c
|||||     |||  ||||||||||  ||| ||    u
ugagG     UGA  UUGUACCUUC  GAA ga    u
     ----A   UU          GU   U  aaau 

>hsa-mir-302c (-32.00)   [hsa-miR-302c*:8-29] [hsa-miR-302c:43-65]

    ug  UU             C    -G  u 
ccuu  cU  AACAUGGGGGUAC UGCU  ug g
||||  ||  ||||||||||||| ||||  || a
ggaG  GA  UUGUACCUUCGUG AUga  ac a
    GU  CU             A    aa  a 

>hsa-mir-302d (-29.20)   [hsa-miR-302d*:6-27] [hsa-miR-302d:44-66]

  u u    U                ---C   ga 
cc c ACUU AACAUGGAGGCACUUG    ugu  c
|| | |||| ||||||||||||||||    |||   
gg G UGAG UUGUACCUUCGUGAAU    aca  a
  U -    U                aaaa   gu 

>hsa-mir-367 (-28.90)   [hsa-miR-367*:6-27] [hsa-miR-367:44-65]

                UA     C    uugaa 
ccauuACUGUUGCUAA  UGCAA UCUg     u
||||||||||||||||  ||||| ||||      
gguAGUGGUAACGAUU  ACGUU Aggu     a
                UC     A    uaaau 

>hsa-mir-376c (-24.02)   [hsa-miR-376c:43-63]

    g     ua     u         uguua 
aaaa gugga  uuccu cuauguuua     u
|||| |||||  ||||| |||||||||     u
uuuU CACCU  AAGGA GAUACAAau     u
    G     UA     -         uggua 

>hsa-mir-369 (-29.30)   [hsa-miR-369-5p:9-30] [hsa-miR-369-3p:44-64]

u   ag               UA      Cuuua 
 uga  ggAGAUCGACCGUGU  UAUUCG     u
 |||  |||||||||||||||  ||||||      
 acu  UUUCUAGUUGGUACA  AUAAgc     u
g   cu               UA      uucag 

>hsa-mir-370 (-32.60)   [hsa-miR-370:48-69]

      agaa       ca gu   u    u   a ag 
agacag    gccaggu  c  cuc gcag uac c  c
||||||    |||||||  |  ||| |||| ||| |  u
ucuguc    UGGUCCA  G  GGG CGUC Gug g  c
      ----       AG UG   U    C   a ca 

>hsa-mir-371 (-39.10)   [hsa-miR-371-5p:6-25] [hsa-miR-371-3p:42-64]

            CU    G         u   c 
guggcACUCAAA  GUGG GGCACUuuc gcu u
||||||||||||  |||| ||||||||| |||  
cauUGUGAGUUU  UACC CCGUGAAag ugg c
            UC    G         -   u 

>hsa-mir-372 (-27.10)   [hsa-miR-372:42-64]

gug   -         g -      a    gaug 
   ggc cucaaaugu g agcacu uucu    u
   ||| ||||||||| | |||||| ||||    c
   cUG GAGUUUACA C UCGUGA AAgg    c
-ca   C         G G      -    ugaa 

>hsa-mir-373 (-35.94)   [hsa-miR-373*:6-27] [hsa-miR-373:44-66]

         -     G            uuuuug 
gggauACUC AAAAU GGGGCGCUUUCC      u
||||||||| ||||| ||||||||||||       
cccUGUGGG UUUUA CUUCGUGAAGgg      c
         G     G            ucaugu 

>hsa-mir-374a (-35.20)   [hsa-miR-374a:12-33] [hsa-miR-374a*:42-63]

     c   c            C           u 
uacau ggc aUUAUAAUACAA CUGAUAAGUGu a
||||| ||| |||||||||||| |||||||||||  
augug cug UAAUGUUAUGUU GACUAUUCacg u
     u   U            A           a 

>hsa-mir-375 (-26.20)   [hsa-miR-375:40-61]

c  -    a      ccu  c     c  gac 
 cc cgcg cgagcc   cg acaaa cg   c
 || |||| ||||||   || ||||| ||    
 gg GUGC GCUCGG   GC UGUUU gc   u
c  A    -      CUU  U     u  gag 

>hsa-mir-376a-1 (-18.20)   [hsa-miR-376a*:7-28] [hsa-miR-376a:44-64]

u    g  A    C    U      --GUA   u 
 aaaa GU GAUU UCCU CUAUGA     cau a
 |||| || |||| |||| ||||||     ||| u
 uuuU CA CUAA AGGA GAUACU     gua u
c    G  C    A    -      Aauua   u 

>hsa-mir-377 (-27.80)   [hsa-miR-377*:7-28] [hsa-miR-377:45-66]

uu              C   -    A    - uuu 
  gagcAGAGGUUGCC UUG GUGA UUCg c   a
  |||||||||||||| ||| |||| |||| |   u
  uuUGUUUUCAACGG AAC CACU Aagu g   u
-g              A   A    -    u uau 

>hsa-mir-378 (-39.20)   [hsa-miR-378*:5-26] [hsa-miR-378:43-63]

   g  C              UGU      ccu 
agg CU CUGACUCCAGGUCC   GUguua   a
||| || ||||||||||||||   ||||||    
ucc GA GACUGAGGUUCAGG   CAcgau   g
   G  A              --U      aaa 

>hsa-mir-379 (-26.60)   [hsa-miR-379:6-26] [hsa-miR-379*:44-65]

    a    A       GA       -  uu u 
agag UGGU GACUAUG  ACGUAGG cg  a g
|||| |||| |||||||  ||||||| ||  |  
ucUC AUCA CUGGUAC  UGUAUcc gu  u a
    A    C       AA       a  cu u 

>hsa-mir-380 (-24.80)   [hsa-miR-380*:5-26] [hsa-miR-380:40-61]

      GUU       GA       C   c 
aagaUG   GACCAUA  ACAUGCG uau u
||||||   |||||||  ||||||| |||  
UUCUAC   CUGGUAU  UGUAUgc gug c
      -AC       AA       u   u 

>hsa-mir-381 (-35.00)   [hsa-miR-381:49-70]

      a  c   g        u        --g   u 
uacuua ag gag uugcccuu guauauuc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   cag u
      G  U   G        -        gua   u 

>hsa-mir-382 (-28.50)   [hsa-miR-382:11-32]

    u       -A           UG      - uuu 
uacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuuuuuu  caacaggcacu  cuaagc g   u
    -       ca           ua      a uau 

>hsa-mir-383 (-27.30)   [hsa-miR-383:7-28]

   -c  A      AA    A        uug   gga 
cuc  uc GAUCAG  GGUG UUGUGGCU   ggu   u
|||  || ||||||  |||| ||||||||   |||    
gag  ag cugguc  ucac gacaccga   cua   a
   aa  a      cg    -        ---   auu 

>mmu-mir-375 (-26.20)   [mmu-miR-375:40-61]

c  -    a      ccu  c     c  gac 
 cc cgcg cgagcc   cg acaaa cg   c
 || |||| ||||||   || ||||| ||    
 gg GUGC GCUCGG   GC UGUUU gc   u
c  A    -      CUU  U     u  gag 

>mmu-mir-376a (-16.21)   [mmu-miR-376a*:6-27] [mmu-miR-376a:44-64]

u    G  A    C    U      GUacaaua 
 aaaa GU GAUU UCCU CUAUGA        u
 |||| || |||| |||| ||||||        u
 uuuU CA CUAA AGGA GAUGCU        a
c    G  C    A    -      Aaucagua 

>mmu-mir-377 (-27.80)   [mmu-miR-377:44-65]

u              c   -    a    - uuu 
 gagcagagguugcc uug guga uucg c   a
 |||||||||||||| ||| |||| |||| |   u
 uuUGUUUUCAACGG AAC CACU Aagu g   u
g              A   A    -    u uag 

>mmu-mir-378 (-39.20)   [mmu-miR-378*:5-26] [mmu-miR-378:43-63]

   g  C              UGU      ccu 
agg CU CUGACUCCAGGUCC   GUguua   c
||| || ||||||||||||||   ||||||    
ucc GA GACUGAGGUUCAGG   CAcgau   g
   G  A              --U      aaa 

>mmu-mir-379 (-27.40)   [mmu-miR-379:6-26]

    a    A       GA       -  uua 
agag UGGU GACUAUG  ACGUAGG cg   u
|||| |||| |||||||  ||||||| ||   g
ucuc auca cugguac  uguaucc gu   u
    a    c       aa       a  uuu 

>mmu-mir-380 (-27.00)   [mmu-miR-380-5p:4-25] [mmu-miR-380-3p:40-61]

      GUU       GA       c   u 
aagAUG   GACCAUA  ACAUGCG uac u
||||||   |||||||  ||||||| |||  
UUCUAC   CUGGUAU  UGUAUgc gug c
      -AC       GA       u   u 

>mmu-mir-381 (-35.00)   [mmu-miR-381:49-70]

      a  c   g        u        --g   u 
uacuua ag gag uugcccuu guauauuc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   cag u
      G  U   G        -        gua   u 

>mmu-mir-382 (-28.50)   [mmu-miR-382:11-32] [mmu-miR-382*:49-70]

    u       -A           UG      - uuu 
uacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuUUUUU  CAACAGGCACU  CUaagc g   u
    -       CA           UA      a ugu 

>mmu-mir-383 (-28.90)   [mmu-miR-383:4-25]

----cucA      AA    A        uug   gga 
        GAUCAG  GGUG CUGUGGCU   ggu   u
        ||||||  |||| ||||||||   |||    
        cugguc  ucac gacaccga   cua   a
gagaaaga      cg    -        ---   auu 

>cel-lsy-6 (-26.90)   [cel-lsy-6:49-69]

c    -          a   u       a   aaaaa 
 cauc aaaugcgucu gua caaaauc ugu     c
 |||| |||||||||| ||| ||||||| |||      
 guaG UUUACGCAGA UAU GUUUUag aca     u
a    C          G   -       -   aaaug 

>hsa-mir-340 (-36.00)   [hsa-miR-340:16-37] [hsa-miR-340*:58-79]

--uu     u      aU       -CAA      U    g     ug 
    guacc ggugug  UAUAAAG    UGAGAC GAUU ucaua  u
    ||||| ||||||  |||||||    |||||| |||| |||||  c
    uaugg ccauac  AUAUUUC    ACUCUG CUag ggugu  g
auuc     u      CG       AUUG      C    -     uu 

>hsa-mir-330 (-46.52)   [hsa-miR-330-5p:18-39] [hsa-miR-330-3p:57-79]

cuuu   -  u a           --    -    U   AG    ugcaa 
    ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ccg cu g gacggAGAGAC  CCGG ACAC GAA  CGag     u
---c   u  c c           GU    C    -   -A    ccaac 

>hsa-mir-328 (-46.30)   [hsa-miR-328:48-69]

--u  ag           ga     u     a aaa  g 
   gg  ugggggggcag  ggggc caggg g   gu c
   ||  |||||||||||  ||||| ||||| |   ||  
   cc  GCCUUCCCGUC  UCCCG GUCcc c   ca a
guc  cU           UC     -     - -ga  u 

>hsa-mir-342 (-47.70)   [hsa-miR-342-5p:19-39] [hsa-miR-342-3p:61-83]

gaaac     u        G      --UA      AUUGA      ugg  a 
     ugggc caaggugA GGGUGC    UCUGUG     gggaca   uu a
     ||||| |||||||| ||||||    ||||||     ||||||   ||  
     auccg guuccacU CCCACG    AGACAC     CUCUgu   ag u
-auuc     -        G      CUAA      ----A      -ua  g 

>hsa-mir-337 (-40.30)   [hsa-miR-337-5p:23-43] [hsa-miR-337-3p:61-82]

guagucagua uu         -   C   U     C        -   ca 
          g  ggggggugg GAA GGC UCAUA AGGAGUUg aug  c
          |  ||||||||| ||| ||| ||||| |||||||| |||   
          c  uccccuaCU CUU CCG AGUAU UCCUCgac uau  a
--------aa -u         U   U   U     A        c   ug 

>hsa-mir-323 (-37.70)   [hsa-miR-323-5p:16-37] [hsa-miR-323-3p:51-71]

---uu      u g        G U     GCGC  U    uua 
     gguacu g agagAGGU G CCGUG    GU CGCu   u
     |||||| | |||||||| | |||||    || ||||    
     cuauga c uuUCUCCA C GGCAC    CA gcgg   u
cuaau      - g        G U     AUUA  C    uau 

>hsa-mir-326 (-55.80)   [hsa-miR-326:60-79]

cuc        guu          c       uugu  a     -g  g 
   aucugucu   gggcuggagg agggccu    ga ggcgg  ug u
   ||||||||   |||||||||| |||||||    || |||||  || g
   uaggcgga   cccGACCUCC UCCCGGG    CU CCgcu  ac c
acu        -gc          U       ---U  -     ag  u 

>hsa-mir-151 (-46.20)   [hsa-miR-151-5p:11-31] [hsa-miR-151-3p:47-67]

---------------u      c            CA          u ucu 
                uuccug ccUCGAGGAGCU  CAGUCUAGUa g   c
                |||||| ||||||||||||  |||||||||| |    
                agggac GGAGUUCCUCGA  GUCAGAUCau c   a
cuccacucauacuggu      a            -A          c ccu 

>hsa-mir-135b (-47.20)   [hsa-miR-135b:16-38] [hsa-miR-135b*:55-76]

-------ca    -                   CAU          --   cu 
         cucu gcuguggccUAUGGCUUUU   UCCUAUGUGA  uug  g
         |||| |||||||||||||||||||   ||||||||||  |||   
         ggga ugacaucGGGUACCGAAAA   GGGAUGUAcu  aac  u
ccucgagcg    g                   -UC          ca   cc 

>hsa-mir-148b (-35.00)   [hsa-miR-148b*:25-46] [hsa-miR-148b:63-84]

caagcac  uu   a       ug         U  A    CA    gugg u 
       ga  agc uuugagg  AAGUUCUGU AU CACU  GGCu    c c
       ||  ||| |||||||  ||||||||| || ||||  ||||    | u
       cu  ucg aagcucU  UUCAAGACA UA GUGA  CUga    g c
-----au  -u   a       GU         C  C    --    --aa u 

>hsa-mir-331 (-43.52)   [hsa-miR-331-5p:26-47] [hsa-miR-331-3p:61-81]

gaguuugguuuu         u        U    U       AU Ccaga 
            guuuggguu guuCUAGG AUGG CCCAGGG  C     u
            ||||||||| |||||||| |||| |||||||  |     c
            cgaauccaa cAAGAUCC UAUC GGGUCCC  g     a
----------cu         c        -    C       CG accaa 

>hsa-mir-324 (-38.60)   [hsa-miR-324-5p:16-38] [hsa-miR-324-3p:53-72]

cu      gc     C   U C   A     U   U  aaag 
  gacuau  cuccc GCA C CCU GGGCA UGG GU    c
  ||||||  ||||| ||| | ||| ||||| ||| ||     
  cugaug  gggGG CGU G GGA CCCGU Acc ca    u
--      uu     U   C U   C     C   -  gagg 

>hsa-mir-338 (-26.22)   [hsa-miR-338-5p:6-27] [hsa-miR-338-3p:42-63]

   c      U   -         -   Gauga 
ucu cAACAA AUC CUGGUGCUG AGU     c
||| |||||| ||| ||||||||| |||     u
aga GUUGUU UAG GACUACGAC Uca     c
   a      U   U         C   gcgga 

>hsa-mir-339 (-49.20)   [hsa-miR-339-5p:15-37] [hsa-miR-339-3p:50-72]

----------c       c    cU C     C  C   A       u  g 
           ggggcgg cgcu  C CUGUC UC AGG GCUCACG gu c
           ||||||| ||||  | ||||| || ||| ||||||| ||  
           ccccguc gcgG  G GACAG AG UCC CGAGUgu cg c
cgcgucuguga       c    CC A     C  C   G       c  u 

>hsa-mir-335 (-41.50)   [hsa-miR-335:16-38] [hsa-miR-335*:52-73]

-------u  -uu    c        A         C        U  gu 
        gu   ugag gggggUCA GAGCAAUAA GAAAAAUG uu  c
        ||   |||| |||||||| ||||||||| |||||||| ||   
        cg   acuc ccuCCAGU CUCGUUAUU CUUUUUgc aa  a
acuuauau  uuu    u        C         A        c  au 

>mmu-mir-335 (-45.20)   [mmu-miR-335-5p:16-38] [mmu-miR-335-3p:56-77]

--------ucuuu    c        A         C        Uuu    u 
             uggg gggggUCA GAGCAAUAA GAAAAAUG   guuu u
             |||| |||||||| ||||||||| ||||||||   |||| c
             acuc cccCCAGU CUCGUUAUU CUUUUUgc   caaa g
accgauauugggu    u        C         A        ---    u 

>cbr-lsy-6 (-32.40)   [cbr-lsy-6:50-70]

-    a         ca   u       a    aaag 
 ccac gaaugcguc  gua caaaauc cauc    a
 |||| |||||||||  ||| ||||||| ||||    g
 gguG CUUACGCAG  UAU GUUUUag gugg    a
c    C         AG   -       -    caua 

>cel-mir-392 (-37.52)   [cel-miR-392:68-89]

uuuuugaaaauc       cgugu  a    g   u         g      gaaca 
            ucgcaga     uc guca cau cgugguuga gauauc     c
            |||||||     || |||| ||| ||||||||| ||||||     a
            agcgucu     ag cAGU GUG GCACUAGCU CUAUag     a
-----gacaauc       --uuu  a    A   U         A      aaaaa 

>mmu-mir-133a-2 (-35.60)   [mmu-miR-133a*:23-43] [mmu-miR-133a:59-80]

a aa  ----ca     uuu    a       AA  U  A        -ag u 
 g  gc      aaugc   gcug aGCUGGU  AA GG ACCAAAUc   c g
 |  ||      |||||   |||| |||||||  || || ||||||||   | u
 c  cg      uuacg   cgau UCGACCA  UU CC UGGUUUag   g u
a gc  cacuag     cgu    G       AC  C  C        gua g 

>mmu-mir-133b (-61.20)   [mmu-miR-133b:66-87]

c       --gg    --g   --       c        ca  c  a      u  g      
 cuccaaa    gagu   gcc  cccugcu uggcuggu  aa gg accaag cc ucuuc 
 |||||||    ||||   |||  ||||||| ||||||||  || || |||||| || |||| c
 gagguuu    cucg   cgg  gggacga AUCGACCA  UU CC UGGUUU gg agagu 
a       auaa    aaa   uc       c        AC  C  C      -  -      

>hsa-mir-133b (-48.40)   [hsa-miR-133b:66-87]

c   a  a  --aa --a    --       c        ca  c  a      u  g      
 cuc ga ga    g   ugcc  cccugcu uggcuggu  aa gg accaag cc ucuuc 
 ||| || ||    |   ||||  ||||||| ||||||||  || || |||||| || |||| c
 gag uu cu    c   acgg  gggacga AUCGACCA  UU CC UGGUUU gg agagu 
a   g  c  gacc gua    uc       c        AC  C  C      -  -      

>mmu-mir-181b-2 (-33.50)   [mmu-miR-181b:16-38]

uuga     -   cucAA         CU           ---  a 
    uggcu gca     CAUUCAUUG  GUCGGUGGGUu   ug a
    ||||| |||     |||||||||  |||||||||||   || u
    accgg cgu     guaaguaac  uagucacucaa   ac g
aaaa     g   caaac         --           cca  u 

>hsa-mir-325 (-32.70)   [hsa-miR-325:16-38]

----------a              CC   U    G C      GU Uu gug 
           uacagugcuugguu  UAG AGGU U CAGUAA  G  u   a
           ||||||||||||||  ||| |||| | ||||||  |  |    
           gugucacgaacuaa  auc ucca g guuauu  u  a   c
ggucucggauc              cu   c    g a      ug uu aua 

>hsa-mir-345 (-51.30)   [hsa-miR-345:18-39]

---------acc       u      G U       A  C         ug u 
            caaaccc aggucu C GACUCCU GU CAGGGCUCg  a g
            ||||||| |||||| | ||||||| || |||||||||  |  
            guuuggg uccgga g cugggga ca gucccgggu  u g
cgacagcuauaa       -      g u       g  a         gg c 

>hsa-mir-346 (-50.20)   [hsa-miR-346:20-42]

-g u      g ug    u    CU    -  AUG        U  guug 
  g cucugu u  ggcg cUGU  GCCC GC   CCUGCCUC cu    c
  | |||||| |  |||| ||||  |||| ||   |||||||| ||     
  c gagacg g  ccgu gacg  cggg cg   ggacggag ga    u
gg -      - gu    c    uc    u  --g        -  aguc 

>rno-let-7a-1 (-43.50)   [rno-let-7a:13-34]

u     g     U   GU                uuagggucacac 
 ucacu uggga GAG  AGUAGGUUGUAUAGUU            c
 ||||| ||||| |||  ||||||||||||||||            c
 agugg auccu uuc  ucaucuaacauaucaa            a
u     a     -   ug                uagagggucacc 

>rno-let-7a-2 (-39.20)   [rno-let-7a:17-38]

cg   u c       cU   G   U             uagaguuac 
  gca g ucccagg  GAG UAG AGGUUGUAUAGUU         a
  ||| | |||||||  ||| ||| |||||||||||||         a
  cgu c aggguuc  uuc auc uccgacaugucaa         c
ca   u -       cu   g   c             uagagggaa 

>rno-let-7b (-47.60)   [rno-let-7b:7-28] [rno-let-7b*:61-82]

g     U                     -  -----    ca   a 
 cgggg GAGGUAGUAGGUUGUGUGGUU uc     aggg  gug u
 ||||| ||||||||||||||||||||| ||     ||||  |||  
 guCCC UUCCGUCAUCCAACAUAUCaa ag     uccc  cgc g
a     -                     u  aagcc    --   u 

>rno-let-7c-1 (-43.30)   [rno-let-7c:16-37]

u      a      uU   G   U             ua  g ua a 
 gugugc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
 |||||| ||||||  ||| ||| |||||||||||||  || |  | c
 cacacg agguuc  uuc auc uccaacaugucaa  uu a  g c
u      -      cu   g   u             --  g gg u 

>rno-let-7c-2 (-48.70)   [rno-let-7c:14-35]

a     -   g   U   GU                uugggcucugc 
 cggcc uuu ggg GAG  AGUAGGUUGUAUGGUU           c
 ||||| ||| ||| |||  ||||||||||||||||            
 gccgg gaa ucc uuc  ucaucuaacauaucaa           c
c     u   g   u   ug                uggcgucucgc 

>rno-let-7e (-45.90)   [rno-let-7e:15-36] [rno-let-7e*:60-81]

c    cc  c   cU   G                U  ggaaga ac 
 gcgc  cc ggg  GAG UAGGAGGUUGUAUAGU ga      c  c
 ||||  || |||  ||| |||||||||||||||| ||      |   
 cgcg  gg ccC  UUC AUCCUCCGGCAUAUCa cu      g  c
c    uc  a   CU   G                -  --agag ag 

>rno-let-7f-1 (-44.40)   [rno-let-7f:8-29]

a    a UG                      ---------       u 
 ucag g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
 |||| |  ||||||||||||||||||||||         ||||||| a
 aguc c  uccguuaucuaacauaucaaua         ucccauu u
g    - cu                      gaggauuug       u 

>rno-let-7f-2 (-40.70)   [rno-let-7f:8-29]

u      U   GU                uuagggucauac 
 guggga GAG  AGUAGAUUGUAUAGUU            c
 |||||| |||  ||||||||||||||||             
 cacccu uuc  ucaucugacauaucaa            c
g      -   ug                uagagguucuac 

>rno-let-7i (-42.10)   [rno-let-7i:6-27] [rno-let-7i*:62-83]

     U                 U   --------  u     ugu 
cuggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
||||| ||||||||||||||||| |||        || |||||   a
gaUCG UUCCGUCAUCGAACGCG Caa        uc gcccg   c
     -                 U   uagaggug  -     uua 

>rno-mir-7a-2 (-36.60)   [rno-miR-7a:19-41]

-ggaca       c    c   A     A U     U       u uc 
      gaccagc cugu UGG AGACU G GAUUU GUUGUug g  u
      ||||||| |||| ||| ||||| | ||||| ||||||| |  g
      cugguug ggua acc ucuga c cugaa caacaac c  u
acuaca       u    c   g     c -     -       - ug 

>rno-mir-7b (-30.20)   [rno-miR-7b:29-51]

aggccagaacacau   -   aug     U  AAGAC         U      c  au 
              gag cca   cuaug GG     UUGUGAUUU GUUGUu ug  a
              ||| |||   ||||| ||     ||||||||| |||||| ||   
              cuc ggu   gauac cc     gacacugaa caacag au  u
----uuccacuacc   a   -ga     u  -gacc         -      u  ag 

>rno-mir-9-1 (-42.00)   [rno-miR-9:16-38] [rno-miR-9*:55-76]

c       guug   UC               G      u  ug 
 gggguug    uua  UUUGGUUAUCUAGCU UAUGAg gg  u
 |||||||    |||  ||||||||||||||| |||||| ||  g
 ccccaau    aaU  AAGCCAAUAGAUCGA AUAcuu cu  g
a       -aaa   GA               A      -  ga 

>rno-mir-9-3 (-40.10)   [rno-miR-9:16-38] [rno-miR-9*:55-76]

--    gcc       -  C               G     gu  ca 
  ggag   cguuucu cU UUUGGUUAUCUAGCU UAUGA  gc  c
  ||||   ||||||| || ||||||||||||||| |||||  ||   
  ucuc   guaaaga GA AAGCCAAUAGAUCGA AUAcu  cg  a
aa    --a       U  -               A     gc  ag 

>rno-mir-9-2 (-40.10)   [rno-miR-9:16-38] [rno-miR-9*:53-74]

g    c     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aaU  AAGCCAAUAGAUCGA AUAcuu  g u
a    -     a   GA               A      cu g 

>rno-mir-10a (-32.39)   [rno-miR-10a-5p:22-44] [rno-miR-10a-3p:63-84]

-----gacc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguAUA GGGG AUCUA GCUUAAACac       u
acucgccuc   aau    uu        A    -     U          ugguguu 

>rno-mir-10b (-39.50)   [rno-miR-10b:28-49]

cca     guaa     u        a    G     C          -Ug  ac 
   aaguu    cguug cuauauau CCCU UAGAA CGAAUUUGUG   gu  c
   |||||    ||||| |||||||| |||| ||||| ||||||||||   ||   
   uucaa    guagc gguauaua gggg aucuu gcuuagacac   ua  c
-ac     aaac     u        a    -     a          uga  ca 

>rno-mir-15b (-30.30)   [rno-miR-15b:20-41]

u    --a       gua   U       C  C      UA   a  ac 
 ugga   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
u    aaa       aaa   c       u  u      gc   -  ac 

>rno-mir-16 (-37.40)   [rno-miR-16:17-38]

caua     uc    cU         UA        C  ag   aau 
    cuugu  cgcu  AGCAGCACG  AAUAUUGG Gu  uga   a
    |||||  ||||  |||||||||  |||||||| ||  |||    
    ggaca  guga  ucgucgugu  uuauaacc ca  auu   a
auag     gu    uu         ua        a  -a   aua 

>rno-mir-17-1 (-43.70)   [rno-miR-17-5p:14-36] [rno-miR-17-3p:51-72]

     g         -        A  G     GUAGu    u 
gucag auaauguCA AAGUGCUU CA UGCAG     ggug g
||||| ||||||||| |||||||| || |||||     ||||  
caguc uguuacGGU UUCACGGA GU ACGUC     cuac u
     g         G        A  G     ---Au    g 

>rno-mir-18a (-31.00)   [rno-miR-18a:17-39]

u     -        u   --   U   UC   U    A   -  -a  u 
 gcgug cuuuuugu cUA  AGG GCA  UAG GCAG UAG ug  ag a
 ||||| |||||||| |||  ||| |||  ||| |||| ||| ||  ||  
 uguau gaagaaua ggu  ucc cgu  auc cguc auc ac  uc g
c     u        c   cu   u   ga   c    -   u  ga  a 

>rno-mir-19b-1 (-38.02)   [rno-miR-19b:54-76]

    ggu                 -  -      uc    uguau 
cacu   cuaugguuaguuuugca gg uuugca  cagc     a
||||   ||||||||||||||||| || ||||||  ||||     a
gugg   ggugucAGUCAAAACGU CC AAACGU  GUcg     u
    --u                 A  U      --    ucuua 

>rno-mir-19b-2 (-38.40)   [rno-miR-19b:62-84]

      cuac                 --        guu    -      g 
acauug    uuacgguuaguuuugca  gauuugca   cagc guauau u
||||||    |||||||||||||||||  ||||||||   |||| ||||||  
uguagu    aguguuAGUCAAAACGU  CUAAACGU   GUcg uauaua g
      ----                 AC        ---    g      g 

>rno-mir-19a (-34.90)   [rno-miR-19a:49-71]

    c  u     c           --      ---    ag 
gcag cc cuguu guuuugcauag  uugcac   uaca  a
|||| || ||||| |||||||||||  ||||||   ||||  a
cguc gg gguAG CAAAACGUAUC  AACGUG   augu  g
    c  u     U           UA      Uug    aa 

>rno-mir-21 (-43.60)   [rno-miR-21:18-39] [rno-miR-21*:56-77]

u      ccu      gU        A     A     A    u a 
 guacca   ugucgg  AGCUUAUC GACUG UGUUG cugu g a
 ||||||   ||||||  |||||||| ||||| ||||| |||| | u
 uauggu   acaguC  UCGGGUAG CUGAC ACAAC ggua c c
c      uuu      UG        -     G     -    - u 

>rno-mir-22 (-42.80)   [rno-miR-22*:19-40] [rno-miR-22:57-78]

a  --    u   cc               -     A      u  ccu 
 cc  uggc gag  gcaguAGUUCUUCAG UGGCA GCUUUA gu   g
 ||  |||| |||  ||||||||||||||| ||||| |||||| ||   a
 gg  accg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
c  uc    u   -c               G     -      -  acc 

>rno-mir-23a (-32.90)   [rno-miR-23a*:10-31] [rno-miR-23a:46-66]

c  c   c     -       G    G      a  c 
 gg cgg uGGGG UUCCUGG GAUG GAUUUg ug c
 || ||| ||||| ||||||| |||| |||||| || a
 cc guc aCCUU AGGGACC UUAC CUAaac ac g
c  a   a     U       G    A      -  u 

>rno-mir-23b (-33.64)   [rno-miR-23b:58-78]

cuca  -u c  -   c   u   --          -  c      gugacu 
    cc  g uc ugg ugc ugg  guuccuggca ug ugauuu      u
    ||  | || ||| ||| |||  |||||||||| || ||||||       
    gg  c ag acc acg aCC  UAGGGACCGU AC ACUAaa      g
---c  uu c  u   a   c   AU          U  -      auuaga 

>rno-mir-24-1 (-26.32)   [rno-miR-24-1*:6-27] [rno-miR-24:44-65]

    g  G   A         UA     ucuca 
cucc GU CCU CUGAGCUGA  UCAGu     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacac 

>rno-mir-24-2 (-53.50)   [rno-miR-24-2*:25-46] [rno-miR-24:61-82]

-   -u    ---cu     ccgc       G   A         AA    ug  u 
 gcc  cucc     gggcu    cuccuGU CCU CUGAGCUGA  CAGU  au c
 |||  ||||     |||||    ||||||| ||| |||||||||  ||||  ||  
 cgg  gagg     cccga    gagGACA GGA GACUUGACU  GUca  ug c
a   uc    auacc     -ccu       A   C         CG    cg  a 

>rno-mir-25 (-38.40)   [rno-miR-25*:14-35] [rno-miR-25:52-73]

    a ug   ag    G      C G     U   --  ac 
ggcc g  uug  AGGC GAGACA G GCAAU GCu  gg  g
|||| |  |||  |||| |||||| | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUGU C CGUUA Cgg  cc  u
    c gu   AG    G      U A     -   gu  cg 

>rno-mir-26a (-48.40)   [rno-miR-26a:16-37]

a     -   g      U         C          g gca g 
 aggcc gug ccuugU CAAGUAAUC AGGAUAGGCU u   g u
 ||||| ||| |||||| ||||||||| |||||||||| |   |  
 uccgg cgc ggggca guucauugg ucuuauccgg g   c c
g     g   a      c         u          g -aa c 

>rno-mir-26b (-42.60)   [rno-miR-26b:15-35] [rno-miR-26b*:51-72]

u  -    ga   -   U        UC         ug    g 
 gc ccgg  ccc agU CAAGUAAU  AGGAUAGGU  uggu c
 || ||||  ||| ||| ||||||||  |||||||||  ||||  
 cg ggcc  ggg UCG GUUCAUUA  UCUUGUCCg  accg u
c  u    gg   C   -        CC         --    g 

>rno-mir-27b (-50.40)   [rno-miR-27b:61-81]

-    -    aaca                  auug        ugau     
 accu cucu    aggugcagagcuuagcug    gugaacag    uggu 
 |||| ||||    ||||||||||||||||||    ||||||||    ||| u
 ugga gaga    uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
g    a    --ag                  --GA        --uc     

>rno-mir-27a (-38.90)   [rno-miR-27a*:14-35] [rno-miR-27a:56-76]

u  -  u u  a  A         UG  U       a  u  ac 
 gg cc g gg gc GGGCUUAGC  CU GUGAGCA gg cu  a
 || || | || || |||||||||  || ||||||| || ||  g
 cc gg c cc CG CUUGAAUCG  GA CACUUgu cu ga  c
c  a  u -  c  C         GU  -       g  -  aa 

>rno-mir-28 (-41.20)   [rno-miR-28:14-35] [rno-miR-28*:54-75]

   c   a   gcA                --UU   -u  cu 
ggu ccu ccc   AGGAGCUCACAGUCUA    GAG  uc  u
||| ||| |||   ||||||||||||||||    |||  ||  u
uca gga ggg   UCCUCGAGUGUUAGAU    cuc  ag  u
   c   c   AGG                CACc   uu  uc 

>rno-mir-29b-2 (-31.24)   [rno-miR-29b-2*:11-32] [rno-miR-29b:52-74]

         -          C      G  U    uuuucc 
cuucuggaa gCUGGUUUCA AUGGUG CU AGau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuUU UGACUAAAGU UACCAC GA Ucua      u
         G          U      -  -    uguuuc 

>rno-mir-29a (-35.14)   [rno-miR-29a*:16-37] [rno-miR-29a:54-75]

a    uuagagg            UUU       C    ucaa 
 cccc       augACUGAUUUC   UGGUGUU AGag    u
 ||||       ||||||||||||   ||||||| ||||    a
 gggg       uAUUGGCUAAAG   ACCACGA Ucuu    g
a    uuaguaa            UCU       -    uuaa 

>rno-mir-29b-1 (-30.42)   [rno-miR-29b-1*:15-36] [rno-miR-29b:51-73]

-cu       -          U      GU      UUaaa 
   ucaggaa gcuggUUUCA AUGGUG  UUAGAU     u
   ||||||| |||||||||| ||||||  ||||||     a
   gguucUU UGACUAAAGU UACCAC  GAUcug     g
ggu       G          U      --      uuagu 

>rno-mir-29c (-35.40)   [rno-miR-29c*:16-37] [rno-miR-29c:54-75]

a         -  ggc           UCC       ---     u 
 ucucuuaca ca   UGACCGAUUUC   UGGUGUU   Cagag c
 ||||||||| ||   |||||||||||   |||||||   ||||| u
 gggggaugu gu   AUUGGCUAAAG   ACCACGA   guuuu g
a         a  ---           UUU       Ucu     u 

>rno-mir-30c-1 (-35.40)   [rno-miR-30c:17-39] [rno-miR-30c-1*:56-77]

a     uu    ugu U       U   ACA         ---g  a 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    ug g
 |||||  ||||   | ||||||| |||   |||||||||    ||  
 gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ac c
a     --    uuC U       U   --A         ugga  u 

>rno-mir-30e (-52.50)   [rno-miR-30e:17-38] [rno-miR-30e*:59-80]

g        uu  ua            UU           g aaggu 
 ggcagucu  gc  cUGUAAACAUCC  GACUGGAAGcu u     g
 ||||||||  ||  ||||||||||||  ||||||||||| |      
 ccgucgga  cg  GACAUUUGUAGG  CUGACUUUCga g     u
a        --  gC            --           g agagu 

>rno-mir-30b (-42.10)   [rno-miR-30b-5p:16-37] [rno-miR-30b-3p:54-75]

-     uuu     c            U   -        --   u 
 ccgag   caguu aUGUAAACAUCC ACA CUCAGCUg  uca a
 |||||   ||||| |||||||||||| ||| ||||||||  |||  
 gguuc   gucga UGCAUUUGUAGG UGU GGGUCggu  agu c
a     --u     C            -   A        ug   a 

>rno-mir-30d (-34.00)   [rno-miR-30d:12-33] [rno-miR-30d*:52-73]

a    u   u U         CCC           guaa  c 
 aguc gug c GUAAACAUC   GACUGGAAGcu    gc a
 |||| ||| | |||||||||   |||||||||||    ||  
 ucgg cau G CGUUUGUAG   CUGACUUUCga    cg c
c    u   C U         --A           --ac  a 

>rno-mir-30a (-38.00)   [rno-miR-30a:6-27] [rno-miR-30a*:47-68]

   a            UC           -----   a 
gca cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaaa   c 

>rno-mir-30c-2 (-29.14)   [rno-miR-30c:14-36] [rno-miR-30c-2*:54-75]

   u a    uacU       U   ACA         gugaaa 
gag g caga    GUAAACA CCU   CUCUCAGCu      a
||| | ||||    ||||||| |||   |||||||||       
uuc c gucu    CAUUUGU GGA   GAGGGUCga      g
   - -    cUCU       C   --A         aagaau 

>rno-mir-31 (-46.40)   [rno-miR-31:28-49]

u   c   aaac ug  acu      gA     G   C         -U   gaa 
 gcu cug    u  ga   ggagag  GGCAA AUG UGGCAUAGC  Guu   c
 ||| |||    |  ||   ||||||  ||||| ||| |||||||||  |||    
 cga gac    a  cu   ccuuuc  ccguu uac accguaucg  caa   u
u   c   ---- gu  -gu      ua     a   a         uc   gag 

>rno-mir-32 (-33.60)   [rno-miR-32:6-27]

        UG     U            - uu  c 
ggggaUAU  CACAU ACUAAGUUGCAu g  gu a
||||||||  ||||| |||||||||||| |  ||  
cucuuaua  gugug ugauuuaacgua c  cg c
        gu     -            a uc  g 

>rno-mir-33 (-35.80)   [rno-miR-33:6-26]

              A UU         guucu  c 
ccgugGUGCAUUGU G  GCAUUGCAu     gg a
|||||||||||||| |  |||||||||     || g
ggcacuacgugaca c  uguaacgug     cc u
              c uu         ----u  a 

>rno-mir-34b (-34.10)   [rno-miR-34b:13-35]

     cg    -gUA       UAA    C       -   g 
gugcu  guuu    GGCAGUG   UUAG UGAUUGu agu c
|||||  ||||    |||||||   |||| ||||||| ||| g
cacgg  caaa    ccgucac   aauc acuaaca ucg g
     aa    acua       cuc    -       g   u 

>rno-mir-34c (-31.60)   [rno-miR-34c:13-35] [rno-miR-34c*:46-67]

     ag     A   A    A     C      C  a 
agucu  uuacu GGC GUGU GUUAG UGAUUG ua u
|||||  ||||| ||| |||| ||||| |||||| ||  
ucaga  aauGG CCG CACA CAAUC ACUAAc au a
     aa     A   A    C     -      c  g 

>rno-mir-34a (-43.90)   [rno-miR-34a:20-41]

c    u   -    a    uU        -   A          --gug   a 
 cggc gug agua uucu  GGCAGUGU CUU GCUGGUUGUu     agu u
 |||| ||| |||| ||||  |||||||| ||| ||||||||||     |||  
 guug cac ucgu aaga  ccgucaua gaa cgacuaacga     ucg u
u    -   g    g    uc        u   -          aggaa   a 

>rno-mir-92a-1 (-36.80)   [rno-miR-92a:48-68]

---cu   uac            uu  c           uu 
     uuc   acagguugggau  gu gcaaugcugug  u
     |||   ||||||||||||  || |||||||||||   
     gag   uGUCCGGCCCUG  CA CGUUAUgauau  c
gguuu   --u            UU  -           gu 

>rno-mir-92a-2 (-40.80)   [rno-miR-92a:55-75]

u    ---a   a   a     g     u     cau     guguu 
 gccc    uuc ucc caggu gggau agugc   uacuu     a
 ||||    ||| ||| ||||| ||||| |||||   |||||      
 uggg    aag agg GUCCG CCCUG UCACG   AUgaa     g
u    agaa   a   a     G     U     -UU     aaaua 

>rno-mir-93 (-48.20)   [rno-miR-93:15-37]

a   a         -CA       -     U    G   ug  u 
 guc ugggggcuc   AAGUGCU GUUCG GCAG UAG  ca u
 ||| |||||||||   ||||||| ||||| |||| |||  || g
 cag acccccgag   uucacga cgagu cguc auc  gu c
a   g         ccc       u     -    -   ca  c 

>rno-mir-96 (-49.10)   [rno-miR-96:24-46]

c     cca       gg  g  U        A      UU      ---   uc 
 cagua   ucugcuu  cc au UUGGCACU GCACAU  UUGCUu   gug  u
 |||||   |||||||  || || |||||||| ||||||  ||||||   |||   
 gucgu   gggcgaa  gg ua aaccguga cgugua  aacgag   cgc  c
c     --c       aa  g  u        -      cu      ucu   cu 

>rno-mir-98 (-52.00)   [rno-miR-98:16-37]

c   -      ug   U                 U    ---------      aggg 
 ugc acaugc  ggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||| ||||||  ||| ||||||||||||||||| ||||         ||||||    u
 acg ugugug  ccc uuucaucauucaacaua caau         accccg    u
u   g      gu   -                 u    agaagaaua      gauu 

>rno-mir-99a (-38.70)   [rno-miR-99a:13-34] [rno-miR-99a*:50-71]

cc     g    A         UC   U      g  aag 
  cauug caua ACCCGUAGA  CGA CUUGUG ug   u
  ||||| |||| |||||||||  ||| |||||| ||    
  gugac guGU UGGGUAUCU  GCU GAACac gc   g
gu     g    C         UU   C      -  cag 

>rno-mir-99b (-30.00)   [rno-miR-99b:7-28] [rno-miR-99b*:45-66]

     cC         AC   C    C - -   c 
ggcac  ACCCGUAGA  CGA CUUG G g ggc u
|||||  |||||||||  ||| |||| | | |||  
cuguG  UGGGUGUCU  GCU GAAC c c ccg u
     CC         GU   C    a a g   c 

>rno-mir-100 (-28.80)   [rno-miR-100:13-34]

    -uu c    A   CG    UC   A      c  ac 
ccug   g caca ACC  UAGA  CGA CUUGUG ug  c
||||   | |||| |||  ||||  ||| |||||| ||   
ggau   c gugu ugg  aucu  guu gaacac ac  a
    ugu u    a   au    gu   c      -  gu 

>rno-mir-101a (-36.20)   [rno-miR-101a*:10-31] [rno-miR-101a:47-67]

u   cuggc                  A    gucca 
 gcc     UCAGUUAUCACAGUGCUG UGCu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uaggA                  -    aaauc 

>rno-mir-103-2 (-32.10)   [rno-miR-103:52-74]

g    c  g      --   u  u           ----    ua 
 ucuu gu cuuuca  gcu cu uacagugcugc    cuug  g
 |||| || ||||||  ||| || |||||||||||    ||||  c
 agaa ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
a    c  a      AU   -  C           Aacu    uu 

>rno-mir-103-1 (-36.00)   [rno-miR-103:52-74]

u     c    c  --    u  u           c   u g a 
 ucuua ugcc uc  ggcu cu uacagugcugc uug u c u
 ||||| |||| ||  |||| || ||||||||||| ||| | |  
 agagu acgg AG  UCGG GA AUGUUACGACG Aac a g a
c     u    a  UA    -  C           -   u g u 

>rno-mir-106b (-43.60)   [rno-miR-106b:12-32] [rno-miR-106b*:52-73]

        ga -UA       G       AGAUa    uc u 
ccugcugg  c   AAGUGCU ACAGUGC     gugg  c c
||||||||  |   ||||||| |||||||     ||||  | u
ggacgacc  G   UUCAUGG UGUCACG     Cauc  g c
        uC UCG       G       ----C    gu u 

>rno-mir-107 (-35.10)   [rno-miR-107:52-74]

-      c      --a    u  u           c   u   a 
 uucucu ugcuuu   agcu cu uacaguguugc uug ggc u
 |||||| ||||||   |||| || ||||||||||| ||| ||| g
 gagaga acgaaA   UCGG GA AUGUUACGACG Aac uug g
c      c      CUA    -  C           -   -   a 

>rno-mir-122 (-43.00)   [rno-miR-122:15-36]

c        -    c GG       CA          -   c 
 cuuagcag agcu U  AGUGUGA  AUGGUGUUUG ugu c
 |||||||| |||| |  |||||||  |||||||||| ||| a
 ggaucguc ucga a  ucacacu  uaccgcaaac aca a
c        a    c aa       ac          u   a 

>rno-mir-124-3 (-40.30)   [rno-miR-124*:15-36] [rno-miR-124:53-72]

u    -   c    - C        A   GA        uaaug 
 gagg gcc cucu g GUGUUCAC GCG  CCUUGAUu     u
 |||| ||| |||| | |||||||| |||  ||||||||      
 cucc cgg gaga C CGUAAGUG CGC  GGAAUuaa     c
c    g   a    a -        G   AC        cauau 

>rno-mir-124-1 (-35.92)   [rno-miR-124*:14-35] [rno-miR-124:53-72]

a      uc   cC        A   GA        uaaau 
 ggccuc  ucu  GUGUUCAC GCG  CCUUGAUu     g
 ||||||  |||  |||||||| |||  ||||||||     u
 ucgggg  aga  CGUAAGUG CGC  GGAAUuaa     c
g      ua   aC        G   AC        cauac 

>rno-mir-124-2 (-45.70)   [rno-miR-124*:25-46] [rno-miR-124:62-81]

a     au   ----  a         cC        A   GA        uaau 
 ucaag  cag    ag cucugcucu  GUGUUCAC GCG  CCUUGAUu    g
 |||||  |||    || |||||||||  |||||||| |||  ||||||||    u
 aguuc  guc    uc gaggcgaga  CGUAAGUG CGC  GGAAUuaa    c
a     ac   ggca  c         aC        G   AC        caua 

>rno-mir-125a (-44.50)   [rno-miR-125a-5p:15-38] [rno-miR-125a-3p:53-74]

u     c u ug  UC  UG   C    UA        ----  a 
 gccgg c c  gg  CC  AGA CCUU  ACCUGUGA    gg c
 ||||| | |  ||  ||  ||| ||||  ||||||||    ||  
 cgguc g g  CC  GG  UCU GGAG  UGGACAcu    cc g
-     c c gu  GA  GU   U    --        ggga  u 

>rno-mir-125b-1 (-37.40)   [rno-miR-125b-5p:15-36] [rno-miR-125b-3p:55-76]

u    uc c u   UC  UG   C           Au     c 
 gcgc  c c cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  | | |||  ||  ||| |||||||||||  ||||| g
 cgug  g g gUC  GG  UCU GGAUUGGGCAc  uaaau u
-    cu a c   GA  GU   C           -c     u 

>rno-mir-125b-2 (-37.80)   [rno-miR-125b-5p:17-38] [rno-miR-125b*:56-77]

accaga   uu     UC  UG   C   A        -gg   u 
      cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
      |||  |||||  ||  ||| ||| ||||||||   |||  
      gag  ggaUC  GG  UCU GGA UGAACAcu   aug u
---gga   gc     CA  GU   C   C        aca   a 

>rno-mir-126 (-30.70)   [rno-miR-126*:9-29] [rno-miR-126:46-67]

u   a  a           U       C cug   c 
 gac gc CAUUAUUACUU UGGUACG G   uga a
 ||| || ||||||||||| ||||||| |   |||  
 cug uG GUAAUAAUGAG GCCAUGC c   acu c
a   g  C           U       U -aa   u 

>rno-mir-127 (-39.80)   [rno-miR-127:57-78]

-----uuu   ca   ucu      ugcug         g  c      --  a 
        gau  cug   ccagcc     aagcucaga gg ucugau  uc g
        |||  |||   ||||||     ||||||||| || ||||||  || a
        cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacuacu   aa   --u      -----         G  U      cu  a 

>rno-mir-128-1 (-35.90)   [rno-miR-128:50-70]

u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 

>rno-mir-128-2 (-40.50)   [rno-miR-128:52-72]

u ug       a          aug      aa    g gag 
 g  caguggg aggggggccg   cacugu  gaga u   u
 |  ||||||| ||||||||||   ||||||  |||| |    
 u  gucaucc UUUCUCUGGC   GUGACA  CUcu g   a
c gu       c          CAA      --    g acg 

>rno-mir-129-1 (-29.50)   [rno-miR-129:6-26]

u    -       C   CU      G   uu  -  c 
 gggu CUUUUUG GGU  GGGCUU Cug  cu cu c
 |||| ||||||| |||  |||||| |||  || ||  
 ucua gaaaaac cca  cccgaa gac  ga ga a
-    u       c   uu      g   -u  u  c 

>rno-mir-130a (-42.30)   [rno-miR-130a:55-76]

u     -u     ga        c      ug  a  guc   a 
 gcugc  ggccg  gcucuuuu acauug  cu cu   uac c
 |||||  |||||  |||||||| ||||||  || ||   |||  
 ugaug  ccggc  CGGGAAAA UGUAAC  GA ga   aug g
-     uu     UA        U      GU  C  gcc   u 

>rno-mir-130b (-35.80)   [rno-miR-130b:51-72]

      c    ca       cc         a  guggg  u 
ggcuug ugga  cucuuuc  uguugcacu cu     cc c
|||||| ||||  |||||||  ||||||||| ||     ||  
ccggac gccU  GGGAAAG  GUAACGUGA ga     gg u
      u    AC       UA         C  ----a  g 

>rno-mir-132 (-47.10)   [rno-miR-132:59-80]

cc  cccc    -  c a    a         uuc          -g     
  gc    gcgu cu c gggc accguggcu   gauuguuacu  uggg 
  ||    |||| || | |||| |||||||||   ||||||||||  ||| a
  cg    cgca ga g cccG UGGUACCGA   CUGACAAUgg  gcca 
cu  cacc    c  c c    C         CAU          ag     

>rno-mir-133a (-37.90)   [rno-miR-133a:52-73]

-      uuu    a       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 

>rno-mir-134 (-34.90)   [rno-miR-134:8-29]

c     gU        U  -A   G    Gcgu  a 
 agggu  GUGACUGG UG  CCA AGGG    gc c
 |||||  |||||||| ||  ||| ||||    || u
 uccca  cacugauc ac  ggu uccc    ug u
c     ac        c  cg   g    -acu  u 

>rno-mir-135a (-34.80)   [rno-miR-135a:23-45] [rno-miR-135a*:62-83]

a  uaaa     ucua   c            U            -u gua 
 ga    uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA  c   a
 ||    |||||    ||| |||||||||||| ||||||||||||  |    
 cu    aagug    cau AAGUACCGAAGG UAGGGAUGUacu  g   u
a  -uaa     -uua   A            -            cu aaa 

>rno-mir-136 (-45.80)   [rno-miR-136:15-37] [rno-miR-136*:49-70]

u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuUCUGAG UAAAC   GCUACUACcu   a
u        a        -     UCU          cga 

>rno-mir-137 (-51.30)   [rno-miR-137:59-81]

g   -  cug           ug   g           ug a     -  g 
 gcc cu   acucucuucgg  acg guauucuuggg  g uaaua cg a
 ||| ||   |||||||||||  ||| |||||||||||  | ||||| || u
 cgg ga   ugagaggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
a   c  cca           GA   G           GU -     u  a 

>rno-mir-138-2 (-33.90)   [rno-miR-138:9-31]

gu   u  AG             UCA     ---ac   caa 
  ugc gc  CUGGUGUUGUGAA   GGCCG     gag   c
  ||| ||  |||||||||||||   |||||     |||   g
  acg ug  gaccacagcacuu   ucggc     cuc   c
cc   u  -g             -ua     ccauu   cua 

>rno-mir-138-1 (-51.30)   [rno-miR-138:23-45] [rno-miR-138*:61-82]

cu   g  ug    u       AG             UCA       gc a 
  cug ca  gugu gugggac  CUGGUGUUGUGAA   GGCCGuu  c a
  ||| ||  |||| |||||||  |||||||||||||   |||||||  | u
  gac gu  cacg cacucuG  GACCACAACACUU   UCGGCaa  g c
-g   -  --    u       -G             -CA       ga a 

>rno-mir-139 (-34.90)   [rno-miR-139-5p:7-28] [rno-miR-139-3p:43-64]

gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUCCAGu u  c
   ||||||| ||| || |||||||||||| |  u
   auGAGGU GUC CG GCGCAGAGGUcg a  c
-ca       U   C  -            g gg 

>rno-mir-141 (-42.10)   [rno-miR-141:58-79]

-         u a u       --    u          au    gaa 
 ggcugacuc g g ccaucuu  ccag gcaguguugg  gguu   g
 ||||||||| | | |||||||  |||| ||||||||||  ||||   u
 uugacuggg c c GGUAGAA  GGUC UGUCACAAUc  ucga   a
c         c c c       AU    -          -c    agc 

>rno-mir-142 (-44.70)   [rno-miR-142-5p:16-36] [rno-miR-142-3p:52-74]

g        g   c           A         Uaa ag a 
 acagugca uca cCAUAAAGUAG AAGCACUAC   c  c c
 |||||||| ||| ||||||||||| |||||||||   |  |  
 ugucaugu agu GGUAUUUCAUC UUUGUGAUG   g  g u
g        g   A           C         -Ug ga g 

>rno-mir-143 (-63.30)   [rno-miR-143:60-81]

---        c  g      ag      g         g      u  -  ag 
   gcggagcg cu ucuccc  ccugag ugcagugcu caucuc gg uc  u
   |||||||| || ||||||  |||||| ||||||||| |||||| || ||   
   cgucuugu ga agaggg  ggACUC AUGUCACGA GUAGAG cu ag  u
cga        a  -      aa      G         A      U  g  gg 

>rno-mir-144 (-36.80)   [rno-miR-144:50-69]

-   --   u      g        a         -a    gu 
 ggg  ccu ggcugg auaucauc uauacugua  guuu  g
 |||  ||| |||||| |||||||| |||||||||  ||||   
 ccc  ggg cugaUC UGUAGUAG AUAUGACAU  caga  a
c   au   u      A        -         ca    gu 

>rno-mir-145 (-40.42)   [rno-miR-145:16-38]

ca  u  u     c  UC    U  C            uggau 
  cc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
  || || ||||| ||  |||| || ||||||||||||     c
  gg ac ggagu uc  guca aa gguccuuagggg     u
uc  u  u     -  uu    u  a            uagaa 

>rno-mir-146a (-40.00)   [rno-miR-146a:17-38]

---------ugug     u     cU            C        --   g 
             uaucc cagcu  GAGAACUGAAUU CAUGGGUU  aua c
             ||||| |||||  |||||||||||| ||||||||  |||  
             auagg gucga  uucuugacuuga guguccag  ugu a
uacugcuaucucg     -     -u            a        ac   a 

>rno-mir-150 (-53.30)   [rno-miR-150:16-37]

c        g            AC   U       U -   u 
 uucucaag cccugUCUCCCA  CCU GUACCAG G cug g
 |||||||| ||||||||||||  ||| ||||||| | ||| c
 agggguuc gggacagggggu  gga caugguc c gac c
c        a            cc   -       c a   u 

>rno-mir-152 (-49.70)   [rno-miR-152:53-73]

ugu   --                 g  a    cc    cgg   c 
   ucc  ccgggcccagguucugu au cacu  gacu   gcu u
   |||  ||||||||||||||||| || ||||  ||||   |||  
   agg  ggcccgGGUUCAAGACA UA GUGA  CUga   cga g
--c   au                 G  C    --    ---   g 

>rno-mir-153 (-41.30)   [rno-miR-153:53-74]

a     gg      -             gu       -a  aa 
 gcggu  ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g     aa      U             AU       cc  ag 

>rno-mir-154 (-36.90)   [rno-miR-154:15-36]

gc      u            U      UGCC    - uuu 
  ggugcu gaagaUAGGUUA CCGUGU    UUCG c   a
  |||||| |||||||||||| ||||||    |||| |   u
  ccauga uuuuuauccagu ggcaca    aagc g   u
aa      c            u      uacu    a ugc 

>rno-mir-181c (-45.30)   [rno-miR-181c:24-45]

---agaacuug   a  g       gAA        CU       A     ggca 
           cca gg uuugggg   CAUUCAAC  GUCGGUG GUuug    g
           ||| || |||||||   ||||||||  ||||||| |||||    c
           ggu cc gagcccc   gugaguug  cagcuac caaac    u
cccaccgucaa   -  g       -ag        -c       -     agac 

>rno-mir-181a-2 (-35.67)   [rno-miR-181a:39-61]

agaugggcaaccaaggcagccuuaa     cu   u  A   U      CU  C    A    gggauuca 
                         gagga  cca gg ACA UCAACG  GU GGUG GUuu        a
                         |||||  ||| || ||| ||||||  || |||| ||||         
                         uucuu  ggu cc ugu aguugc  ca ccac caaa        a
------------------------a     ag   u  a   c      --  a    -    aaaaacaa 

>rno-mir-181b-1 (-34.50)   [rno-miR-181b:36-58]

ccugugcagagaugauguuuacaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUu   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     guaaguaac   agucacucga   ga g
-------------------uucgcc       -caac         --a          aaa  u 

>rno-mir-181b-2 (-31.10)   [rno-miR-181b:15-37]

-uga     -   cucAA         CUG          ---  a 
    uggcu gca     CAUUCAUUG   UCGGUGGGUu   ug a
    ||||| |||     |||||||||   ||||||||||   || u
    accgg cgu     guaaguaac   ggucacucaa   ac g
aaaa     g   caaac         --u          cca  u 

>rno-mir-183 (-37.40)   [rno-miR-183:27-48]

cca a ag g  a   c  uc    g      --AC     GA        --   ac 
   g g  u ug cuc ug  cugu UAUGGC    UGGUA  AUUCACUg  uga  a
   | |  | || ||| ||  |||| ||||||    |||||  ||||||||  |||   
   c c  a ac gag ac  gaca auaccg    gccau  uaagugac  gcu  g
-ag g cu g  a   -  ga    a      ggaa     --        ug   cu 

>rno-mir-184 (-40.70)   [rno-miR-184:47-68]

----     u                ag     -    ug 
    cacuu cccuuaucaguuuucc  ccagc uuug  a
    ||||| ||||||||||||||||  ||||| ||||   
    gugaa GGGAAUAGUCAAGAGG  GGUug aaau  c
guca     U                CA     u    gu 

>rno-mir-185 (-53.10)   [rno-miR-185:14-35]

-     u       UG   A     G         Au  uc 
 ggggg gagggau  GAG GAAAG CAGUUCCUG  gg  c
 ||||| |||||||  ||| ||||| |||||||||  ||   
 cccuc cuuccug  cuc cuuuc gucggggac  cc  c
a     u       gu   -     g         --  uc 

>rno-mir-186 (-42.14)   [rno-miR-186:15-36]

u     c                 U     U      ucucau 
 gcuua aacuuucCAAAGAAUUC CCUUU GGGCUu      u
 ||||| ||||||||||||||||| ||||| ||||||       
 cgagu uugaaggguuuuuuaag ggaaa cccgaa      u
u     -                 u     -      uuuuau 

>rno-mir-187 (-47.50)   [rno-miR-187:66-87]

gg  ucaca    acaa    ga     a    a           c  -  c - ug 
  gc     ggac    ugcg  uccuc ggcu caacacaggac cg gg g c  c
  ||     ||||    ||||  ||||| |||| ||||||||||| || || | |   
  cg     ucug    acgc  gggaG CCGA GUUGUGUUCUG GC cc c g  u
-a  -----    ---g    -a     G    C           U  U  c a uc 

>rno-mir-190 (-32.50)   [rno-miR-190:15-36]

u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cguuc g gaca c  uauacgaacuauaua  ucaac    u
c     u u    u cu               --     cuaa 

>rno-mir-191 (-48.90)   [rno-miR-191:15-37]

-   u   c      C          C  AA       uu  -  c 
 ggc gga agcggg AACGGAAUCC AA  GCAGCUG  gu cu c
 ||| ||| |||||| |||||||||| ||  |||||||  || ||  
 ccg ccu ucgucc uugcuuuagg uu  cgucgac  ua ga a
u   u   c      c          -  ca       cu  c  g 

>rno-mir-192 (-40.50)   [rno-miR-192:24-44]

-gucaaga  ga   c   g g  C         -     A       uacuc  a 
        ug  gug aca g cu UGACCUAUG AAUUG CAGCCag     ug u
        ||  ||| ||| | || ||||||||| ||||| |||||||     ||  
        ac  cgc ugu u ga acuggauac uugac gucgguc     gc c
cgaccgua  uc   u   a g  c         c     c       --ucc  u 

>rno-mir-193 (-50.30)   [rno-miR-193*:20-41] [rno-miR-193:54-75]

gcggac          ag     U     CG   A  A    ggu 
      gggagcugag  cUGGG CUUUG  GGC AG UGAg   g
      ||||||||||  ||||| |||||  ||| || ||||    
      cccucggcuc  GACCC GAAAC  CCG UC Acuu   u
------          cU     U     AU   G  A    gac 

>rno-mir-194-1 (-44.70)   [rno-miR-194:15-36]

a     -      cgU         A      GU   -   u 
 uggag ucauca   GUAACAGCA CUCCAU  GGA cug g
 ||||| ||||||   ||||||||| ||||||  ||| |||  
 accuc gguagu   cauugucgu gaggug  ccu gac c
-     c      uuu         c      ac   a   a 

>rno-mir-194-2 (-48.30)   [rno-miR-194:15-36]

-u   uc       cU         A      G    ---   g 
  ggc  ccacccc  GUAACAGCA CUCCAU UGGA   agu c
  |||  |||||||  ||||||||| |||||| ||||   |||  
  ucg  ggugggg  uauugucgu ggggug accu   uca c
gg   ga       uc         c      -    uag   c 

>rno-mir-195 (-45.70)   [rno-miR-195:15-35]

a   cu    g  cU          -A          c  g a 
 acu  ccug cu  AGCAGCACAG  AAUAUUGGCa gg u a
 |||  |||| ||  ||||||||||  |||||||||| || | g
 ugg  ggac ga  ucgucguguc  uuauaaccgu cu a u
g   ug    g  cc          gg          -  g g 

>rno-mir-196a (-48.80)   [rno-miR-196a:25-46] [rno-miR-196a*:61-82]

-------uguuugcuca     uc                  A          a ug   
                 gcuga  uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
                 |||||  |||||||||||||||||| |||||||||| |  | u
                 ugacu  acauugAGUCCGUCAAAG ACAACGGCUc a  uu 
cgggagcugcuuuuggc     --                  A          a gu   

>rno-mir-199a (-44.40)   [rno-miR-199a-5p:31-53] [rno-miR-199a-3p:70-91]

uggaagcuu    aga    -    c   gcC       U        C   --UCa  ac 
         cugg   uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
         ||||   |||| |||| |||   ||||||| |||||||| |||     ||   
         gacc   ggga cggg cag   GGUUACA GUCUGAUG ACA     cc  a
-------ac    ---    a    u   AUU       C        -   uguug  gu 

>rno-mir-200c (-31.60)   [rno-miR-200c:45-66]

  cu    -      a        u   u   gg 
cc  cguc uuaccc gcaguguu ggg gcu  u
||  |||| |||||| |||||||| ||| |||  u
gg  GUAG AAUGGG CGUCAUAA cuc uga  g
  aG    U      C        U   -   gg 

>rno-mir-200a (-42.70)   [rno-miR-200a:54-75]

cu   - c   g        -             c    uu  uu 
  ggg c ucu ugggcauc uuaccggacagug ugga  uc  g
  ||| | ||| |||||||| ||||||||||||| ||||  ||  g
  ccc g gga acuUGUAG AAUGGUCUGUCAC AUcu  ag  c
-a   a u   a        C             A    -c  uu 

>rno-mir-200b (-41.50)   [rno-miR-200b:57-79]

ccaacuu    ag    g c    -    ug     c      u gug 
       gggc  ccgu g cauc uuac  ggcag auugga a   u
       ||||  |||| | |||| ||||  ||||| |||||| |    
       cccg  ggcg C GUAG AAUG  CCGUC UAAUcu u   c
-gcacgu    -a    g A    U    GU     A      c agu 

>rno-mir-203 (-49.20)   [rno-miR-203:52-73]

-------------       u    c         u    g    a     - ug 
             gcgcgcc gguc agugguucu aaca uuca caguu c  u
             ||||||| |||| ||||||||| |||| |||| ||||| |   
             cgcgcgg ccaG UCACCAGGA UUGU AAGU Guuaa g  a
agcggcgacggca       c    A         U    A    -     c cg 

>rno-mir-204 (-44.56)   [rno-miR-204:33-54] [rno-miR-204*:72-93]

ggcuacagcccuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acUUG AGGGAAACGG AGGGU CGga      a
--------------c   c  u    uua     C          A     -    ggaagu 

>rno-mir-205 (-50.90)   [rno-miR-205:33-54]

aaa    cccagacaa      ggu       UC           C        ucuua 
   cagc         uccaug   ccuccug  CUUCAUUCCAC GGAGUCUG     u
   ||||         ||||||   |||||||  ||||||||||| ||||||||      
   gucg         agguac   ggaggac  gaagugaggug cuuuagac     g
acc    ---------      ---       uc           a        caacc 

>rno-mir-206 (-35.10)   [rno-miR-206:51-72]

--   c  c                     c u     auau 
  cuu cc aggccacaugcuucuuuauau c cauag    c
  ||| || ||||||||||||||||||||| | |||||    a
  gaa gg uuuGGUGUGUGAAGGAAUGUA G GUauc    c
gu   c  u                     A -     gcgu 

>rno-mir-208 (-40.50)   [rno-miR-208:50-71]

u         g  ug       g  c  gg      c  a 
 uccuuugac gg  agcuuuu gc cg  uuauac ug c
 ||||||||| ||  ||||||| || ||  |||||| || u
 aggagacug uU  UCGAAAA CG GC  AAUAug ac c
g         g  GU       A  A  AG      c  u 

>rno-mir-210 (-47.30)   [rno-miR-210:66-87]

cc  gg -a  cc u     cu    a     a   cc    -     c  c   gc 
  gg  c  gu  c ccagg  cagg cagcc cug  caca gcaca ug guu  u
  ||  |  ||  | |||||  |||| ||||| |||  |||| ||||| || |||   
  cc  g  cg  g ggucc  gucu GUCGG GAC  GUGU CGUGU ac cag  c
--  aa cg  ac -     cu    A     C   -A    G     C  c   gc 

>rno-mir-211 (-57.70)   [rno-miR-211:26-47]

-ca  -u    ccu      u                CA     U    ag  cu 
   gc  ugga   gugacc cugggcUUCCCUUUGU  UCCUU GCCU  gc  c
   ||  ||||   |||||| ||||||||||||||||  ||||| ||||  ||   
   cg  aucu   cacugg gacucggggggaaacg  aggaa cggg  ug  u
aga  uc    --c      u                ac     -    -g  ag 

>rno-mir-212 (-49.10)   [rno-miR-212:72-93]

cgggauauccccgccc    -  c   c   -ca  u     cu      c      ccc     
                gggc ag gcg cgg   cc uggcu  agacug uuacug   gggc 
                |||| || ||| |||   || |||||  |||||| ||||||   ||| c
                cccg uc cgc gcc   GG ACUGA  UCUGAC AAUgac   cccg 
------------ccgc    g  -   a   ACC  C     CC      -      --u     

>rno-mir-181a-1 (-31.12)   [rno-miR-181a:15-37] [rno-miR-181a*:55-76]

-----------a    -   uc  u A   U      CU       A    ggaau 
            gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
            |||| |||  || | ||| ||||||  ||||||| ||||     c
            ccaa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
ccucaucuauua    u   ua  C A   U      --       -    aauaa 

>rno-mir-214 (-63.62)   [rno-miR-214:71-91]

guccuggauggaca a           u          aca            aacau 
              g guugucaugug cugccugucu   cuugcugugcag     c
              | ||||||||||| ||||||||||   ||||||||||||     c
              c caacaguacac GACGGACAGA   GGACGACAuguc     g
---------uccga c           u          CAC            cacuc 

>rno-mir-216a (-36.10)   [rno-miR-216a:19-40]

-----------guua   a  ag     u         CU   A        --   uc 
               gcu ug  uuagu UAAUCUCAG  GGC ACUGUGAg  aug  c
               ||| ||  ||||| |||||||||  ||| ||||||||  |||  c
               cga ac  aaucg auuaggguc  cug ugacacuc  uac  u
cuccaguuccuuuaa   g  -a     u         -u   g        cu   ua 

>rno-mir-217 (-33.80)   [rno-miR-217:32-55]

accacagucauugua    u     c c  a  C     C         C   AUaa     
               guuu gaugu g ag UA UGCAU AGGAACUGA UGG    gacu 
               |||| ||||| | || || ||||| ||||||||| |||    ||| c
               caaa cuacg c uc gu acgua uccuugacu acc    cuga 
--------------a    u     a u  c  u     a         -   ---a     

>rno-mir-218-2 (-44.50)   [rno-miR-218:25-45] [rno-miR-218*:67-88]

gac   uu -cc   gg       uUU         CU        gguggaacga  g 
   cag  g   gcg  gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||  |   |||  |||||||   |||||||||  ||||||||          ||  
   guc  c   cgc  cgaaagG   CACGAACUG  UUGGUACa          gc a
-ac   cu ucu   ua       CGC         UC        --------ag  a 

>rno-mir-218-1 (-42.70)   [rno-miR-218:25-45]

-   au  c  a   a   u      U         CU        gc    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   cu  -  a   a   c      c         cc        -a    agu 

>rno-mir-219-1 (-60.00)   [rno-miR-219-5p:21-41] [rno-miR-219-1-3p:62-83]

---------cuguccc    c       cU   U     A            a   ucu 
                gggc gcggcuc  GAU GUCCA ACGCAAUUCUcg guc   g
                |||| |||||||  ||| ||||| |||||||||||| |||   g
                cccg cgccgaG  CUG CAGGU UGCGUUGAGAgc cgg   c
gggggagcuccaaacc    c       CC   -     C            -   ccu 

>rno-mir-219-2 (-47.30)   [rno-miR-219-5p:19-39] [rno-miR-219-2-3p:62-83]

acuca       c     U   U     AA           uac a  c 
     ggggcuu accac GAU GUCCA  CGCAAUUCUug   g gu u
     ||||||| ||||| ||| |||||  |||||||||||   | || g
     ccucgag uggUG CUA CAGGU  GUGUUAAGAgc   c cg c
---gg       u     U   -     CG           caa -  g 

>rno-mir-221 (-44.00)   [rno-miR-221:65-87]

----ugaaua       cugg   a    -  ug   u         auuu    -   u 
          uccaggu    ggc ugaa cc  gca acaauguag    cugu guu g
          |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
          aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
cucuuuacga       ----   g    U  GU   C         ----    a   a 

>rno-mir-222 (-52.50)   [rno-miR-222:62-82]

--aa    uag      c    u              -     auc   ucuu 
    ggau   ggugcc ucag ggcucaguagccag uguag   cug    u
    ||||   |||||| |||| |||||||||||||| |||||   |||    g
    ucua   cuacgg aguc cUGGGUCAUCGGUC ACAUC   gac    g
ucga    ---      u    u              U     GAc   uaau 

>rno-mir-223 (-43.80)   [rno-miR-223:68-88]

u    ccuucu   -gu        cc u              gaguug         u 
 cugg      gca   guuacgcu  g guauuugacaagcu      gacacucug g
 ||||      |||   ||||||||  | ||||||||||||||      ||||||||| u
 gacu      cgu   cgguguga  C CAUAAACUGUUUGA      CUGUgagau g
-    ---auu   acu        aC C              ------         g 

>rno-mir-290 (-36.90)   [rno-miR-290:14-36]

-   u  u  -      C     A   G          uuu 
 uca cu gc gguuCU AAACU UGG GGCACUUUUU   u
 ||| || || |||||| ||||| ||| ||||||||||    
 agu gg cg ccggga uuugg acc ccgugaaaaa   c
g   u  c  u      u     -   g          uuu 

>rno-mir-291a (-41.50)   [rno-miR-291a-5p:14-35] [rno-miR-291a-3p:50-72]

  g       a  -  U            C  C   ug   c 
cc guguagu gc CA CAAAGUGGAGGC CU UCU  ggc c
|| ||||||| || || |||||||||||| || |||  |||  
gg uacguca CG GU GUUUCACCUUCG GA Aga  ucg g
  g       C  U  -            U  A   --   a 

>rno-mir-292 (-32.70)   [rno-miR-292-5p:12-33] [rno-miR-292-3p:51-73]

   c u           --A    G   U    UGgg     u 
caa c gugauACUCAA   CUGG GGC CUUU    uuuuc u
||| | |||||||||||   |||| ||| ||||    |||||  
guu g cauUGUGAGUU   GACC CCG GAAa    agaag u
   a c           UUG    G   U    ----     g 

>rno-mir-296 (-41.00)   [rno-miR-296*:13-33] [rno-miR-296:47-68]

g   -     u        C  C         G   -u c 
 gac cuuuc ggAGGGCC CC CUCAAUCCU Uug  g u
 ||| ||||| |||||||| || ||||||||| |||  |  
 cug ggaag CCUCUCGG GG GGGUUGGGA Gac  c c
-   u     u        A  U         -   uu g 

>rno-mir-297 (-29.30)   [rno-miR-297:5-27]

-     UG    U      G            c 
 augcA  UAUG GUGCAU UAUGCAUGcaug a
 |||||  |||| |||||| ||||||||||||  
 ugugu  gugu cacgug guauguauguau u
g     gu    u      -            g 

>rno-mir-298 (-47.80)   [rno-miR-298:11-33]

   gg   uc       -       -         uug    u 
cca  ccu  GGCAGAG GAGGGCU GUUCUUCCC   gguu u
|||  |||  ||||||| ||||||| |||||||||   ||||  
ggu  gga  ucgucuc cuuccga caaggaggg   ucag a
   ga   -u       u       u         ---    u 

>rno-mir-299 (-42.30)   [rno-miR-299:7-28]

     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucuu gccaaauggcaggguguaugua  a
     c                      ug 

>rno-mir-300 (-35.50)   [rno-miR-300-5p:6-27] [rno-miR-300-3p:51-72]

   a           G  AU             gc   a 
gcu cUUGAAGAGAG UU  CCUUUGUguguuu  uuu c
||| ||||||||||| ||  |||||||||||||  |||  
cga gagCUUCUCUC AA  GGGAACGUAUaag  aag g
   g           G  -C             ua   c 

>rno-mir-320 (-46.60)   [rno-miR-320:48-69]

gc    c      ---c         uu       c      g 
  cucg uguccu    cgccuucuc  cccgguu uucccg a
  |||| ||||||    |||||||||  ||||||| ||||||  
  gggu auagga    GCGGGAGAG  GGGUCGA AAgggc g
--    -      aaaA         UU       A      u 

>mmu-mir-215 (-37.30)   [mmu-miR-215:30-50]

agcucuc    ucaac  ug       gaA  A     -  UU        c     g 
       agca     gg  uacagga   UG CCUAU GA  UGACAGAC gugca c
       ||||     ||  |||||||   || ||||| ||  |||||||| |||||  
       ucgu     cu  augucuu   ac ggaug cu  acugucug uaugu u
aaauuca    ---ca  gu       aua  c     u  -u        -     g 

>ath-MIR167d (-126.00)   [ath-miR167d:18-39]

u      -u     aa           C  C           auc    ca  -c            u    aaacuucuuuauaauuuaugcacacacauacagcucuuaauggccacaacucaaaguuauaauuagugcaugaucucuaguuauuugacugcuuuuaauauauguuuauggauucacg 
 guuggu  uuuag  gcUGAAGCUGC AG AUGAUCUGGua   gcua  ua  gacauacacaca cacu                                                                                                                      c
 ||||||  |||||  ||||||||||| || |||||||||||   ||||  ||  |||||||||||| ||||                                                                                                                       
 caacca  aaauc  ugacuucgacg uc uacuggaucau   ugau  au  uugugugugugu guga                                                                                                                      a
a      cu     ac           -  c           -ga    ag  au            -    cugugugugugguguauguagauauauauaugauuauuuuugucuuaaaacuugcccaaguuuaacuacacaugguauguguuucacguacguacauuuaauacauguaugugugugu 

>ath-MIR169b (-82.30)   [ath-miR169b:43-63]

     c    u  aa        agu    u      u    C    -     UG           cgu    aac   g       a    gu 
cccaa ggag ag  uugcauga   ggag agagua aaug AGCC AAGGA  ACUUGCCGGaa   uguu   cau cauauga uaau  g
||||| |||| ||  ||||||||   |||| |||||| |||| |||| |||||  |||||||||||   ||||   ||| ||||||| ||||   
ggguu ccuu uc  aacguacu   cuuc ucucgu uuac ucgg uuccu  ugaacggucuu   acaa   gua guguauu auua  a
     -    -  -a        cuu    -      u    a    c     gu           uau    ---   -       a    gu 

>ath-MIR169c (-131.62)   [ath-miR169c:113-133]

ucguccauuaugaguauuaauuaugguuagggaaucuuacagaaugaaaaugaaggugugaauggauu  c     ua      u     -u     aa    cauu     uC     A              --       uauuaugauuacucuauauucgauuuauauuauggagaugaugguuuauauauauuuacuuaucuacauaguuuuag 
                                                                    gu ucauc  aagccu gaaug  gggaa  aggc    guugu  AGCCA GGAUGACUUGCCGG  uagcuug                                                                             u
                                                                    || |||||  |||||| |||||  |||||  ||||    |||||  ||||| ||||||||||||||  |||||||                                                                              
                                                                    ca aguag  uucgga cuuac  uccuu  ucug    caacg  ucggu ucuacugaacggcc  aucgaac                                                                             u
------------------------aguagguauaaguauaguauaaucacuauaaacccuaaaaaaug  c     ca      u     uc     -c    ---u     ua     a              cg       caaugugaagaacgggguuguguguauauauuuauucauuuaugaaaaagcauaauauaaugcaugcuuuuuuuuag 

>ath-MIR169d (-65.70)   [ath-miR169d:41-61]

     a      c   -   g     auu      u     U         A          augu      ca    uu 
guauc uagagu uug cau gaaaa   aaagaa gagau GAGCCAAGG UGACUUGCCG    uaucaa  aauc  a
||||| |||||| ||| ||| |||||   |||||| ||||| ||||||||| ||||||||||    ||||||  ||||   
uauag aucuca aac gua cuuuu   uuucuu cuuug cucgguucc guugaacggc    gugguu  uuag  a
     -      -   u   a     -cu      c     u         a          --cu      --    uc 

>ath-MIR169e (-75.30)   [ath-miR169e:69-89]

-------ugaugaugaugaugagucacuaauuaauu     a      c   -   g     au  aa  u     U         A          auuuucucaacgaau 
                                    guauc uagagu uug cau gaaaa  ag  aa gagau GAGCCAAGG UGACUUGCCG               c
                                    ||||| |||||| ||| ||| |||||  ||  || ||||| ||||||||| ||||||||||               u
                                    cauag aucuca aac gua cuuuu  uc  uu cuuug cucgguuuc guugaacggc               u
acuacuuacuacuacuauauauacuauacaccaauc     -      -   u   g     cu  cc  c     u         a          cuaugguauuaguca 

>ath-MIR169f (-74.10)   [ath-miR169f:32-52]

      u     a       ac       auU         A           uuuaaacccaaccgguuuaugaccauuga 
gggucu gcaug aggaaua  gaaugga   GAGCCAAGG UGACUUGCCGg                             u
|||||| ||||| |||||||  |||||||   ||||||||| |||||||||||                             u
cuuaga uguac uucuuau  cuugcuu   cucgguucc guugaacgguc                             u
      u     c       cu       cgu         a           ugugcuuaguugucuaacacuuacucugg 

>ath-MIR169g (-115.43)   [ath-miR169g:144-164] [ath-miR169g*:204-224]

-ugccuauaaauaccuucaucacgaguaugacaagaucac   a       -agaaaggu       -    ga      ------------         ----      g  ucucuaguu     aga      u    --      au      u    uU         A            uuuuuu     au     uaa 
                                        aag caagaaa         agagaaa acau  uaauga            ugauuacga    ugauga ag         guauc   gggucu gcau  ggaaga  agagaa gagg  GAGCCAAGG UGACUUGCCGgg      uacca  gaauc   u
                                        ||| |||||||         ||||||| ||||  ||||||            |||||||||    |||||| ||         |||||   |||||| ||||  ||||||  |||||| ||||  ||||||||| ||||||||||||      |||||  |||||   u
                                        uuc guuuuuu         ucuuuuu ugua  guuacu            acuagugcu    acuacu uc         uauag   cucaga ugua  uuuucu  ucucuu cuuu  cUCGGUUCC GUUGAACGGCCU      guggu  cuuag   a
acguuuuuguuuuuagacuaguaaguuuagcuuuuuggca   g       aagcguagu       g    aa      uuaauguuucaa         aagu      a  ---------     aac      c    gg      --      c    gu         A            ------     --     uca 

>ath-MIR169h (-80.50)   [ath-miR169h:46-66]

u  uau        aug    c       --       c    g   -          U    U     -  uuuua     uauaua  a      cac  g 
 ca   aagagaaa   guga augaaga  augagaa uugu ugg UAGCCAAGGA GACU GCCUG cg     gacca      uc aagacu   uc a
 ||   ||||||||   |||| |||||||  ||||||| |||| ||| |||||||||| |||| ||||| ||     |||||      || ||||||   ||  
 gu   uucucuuu   cacu uacuucu  uacucuu aaca acu aucgguuccu cuga cggac gc     uuggu      ag uucuga   ag u
g  uuu        --a    -       cu       -    a   u          -    -     u  --ugg     ----ug  a      --u  c 

>ath-MIR169i (-88.50)   [ath-miR169i:40-60]

     -a      aa       -u       u     uu  -          U    U      -c     -----gu        uuuagugucuuguuugaaguca 
gaagg  gauguc  agaugaa  agaagaa cauau  gg UAGCCAAGGA GACU GCCUGa  ucuuu       guaaaaug                      c
|||||  ||||||  |||||||  ||||||| |||||  || |||||||||| |||| ||||||  |||||       ||||||||                       
cuucc  uuacag  ucuacuu  ucuucuu guaua  cc aucgguuccu cuga cggacu  agaaa       cguuuuac                      u
     ac      ac       uc       -     uu  u          -    -      au     aaauauu        caguaacgaacuauguugaaua 

>ath-MIR169j (-84.74)   [ath-miR169j:51-71]

gaguauaaugaggaagagaggucuaacauggcgaaaagagucauguuua           U    U      -u   uuuc    c  u        uuguaauucaug     ug           auu 
                                                 gUAGCCAAGGA GACU GCCUGa  cuu    accu ca gauucaau            gguuu  gauuauuauac   c
                                                 ||||||||||| |||| ||||||  |||    |||| || ||||||||            |||||  |||||||||||    
                                                 uaucgguuccu cuga cggacu  gga    uggg gu cuaaguug            cuaaa  uuaauaauaug   a
-------------------------gcacuuacuuuuuucguacaguuc           -    -      uu   ---u    c  u        ----------ua     gu           aaa 

>ath-MIR169k (-86.80)   [ath-miR169k:43-63]

-uua     -       aa  a   -au         a   uu  -          U    U     -cu   ----c               augucaug     aa     u 
    gaagg agauguc  ag uga   aggagaaca uau  gg UAGCCAAGGA GACU GCCUG   ucu     ugaacaaaauggucg        uuuug  gugac a
    ||||| |||||||  || |||   ||||||||| |||  || |||||||||| |||| |||||   |||     |||||||||||||||        |||||  ||||| u
    cuucc uuuauag  uc acu   ucuucuugu aua  cc aucgguuccu cuga cggac   aga     auuuguuuuaccagu        agaac  uauug a
ccua     a       ac  a   cuu         -   uu  u          -    -     uac   uaaau               ------aa     ca     a 

>ath-MIR169l (-81.24)   [ath-miR169l:44-64]

augaagaagagaggucuaauauggcgaaaagagucauguuua           U    U      -u   uuuc    c  u        uuuaaguucgug     ug           g u 
                                          aUAGCCAAGGA GACU GCCUGa  cuu    accu ca gauucaau            gauuu  gauuauuaugc u u
                                          ||||||||||| |||| ||||||  |||    |||| || ||||||||            |||||  ||||||||||| | a
                                          uaucgguuucu cuga cggacu  gga    uggg gu cuaaguug            cuaga  uuaauaauaug a a
----------------------cuacuucuuucguacaguuc           -    -      uu   ---u    c  u        ----------ua     gu           g a 

>ath-MIR169m (-93.71)   [ath-miR169m:42-62]

ua     -   a   aa      -au       u     uu  -          U    U     -uu    ----            guuagug    -      caa     u 
  gaagg aga guc  agauga   agaagaa cauau  gg UAGCCAAGGA GACU GCCUG   ucuu    ugaguaaaaugg       ucau guuuga   gugac a
  ||||| ||| |||  ||||||   ||||||| |||||  || |||||||||| |||| |||||   ||||    ||||||||||||       |||| ||||||   ||||| u
  cuucc uuu cag  ucuacu   ucuucuu guaua  cc aucgguuccu cuga cggac   agaa    acucauuuuacc       agua cgaacu   uauug a
ua     a   g   ac      cuc       -     uu  u          -    -     uac    aacu            -------    a      --a     a 

>ath-MIR169n (-79.30)   [ath-miR169n:45-65]

gaugaagaagagaggucuaacauggcggaaagcgucauguuua           U    U      -u   uuuc    c  c       uuucaaauu    cau    ga         cuu 
                                           gUAGCCAAGGA GACU GCCUGa  cuu    gccu ca gauucaa         caug   uuug  uuauuauac   u
                                           ||||||||||| |||| ||||||  |||    |||| || |||||||         ||||   ||||  |||||||||    
                                           uaucgguuucu cuga cggacu  gga    uggg gu cuaaguu         guac   aaac  gauaauaug   u
--------------------uaccuaccuuuuucguacaguuc           -    -      uu   ---u    c  u       ---------    uau    ug         aaa 

>ath-MIR171b (-46.70)   [ath-miR171b:78-98]

-----ugcaa   --aa    a      a ug          a     --    c    uaa 
          ggu    cgcg gauauu g  cgguucaauc aauag  ucgu cucu   c
          |||    |||| |||||| |  |||||||||| |||||  |||| ||||    
          cca    gcGC CUAUAA C  GCCGAGUUag uuguu  ggca gagg   u
acgguaaaaa   aaug    A      C GU          c     gu    a    uac 

>ath-MIR171c (-54.80)   [ath-miR171c:90-110]

ugagcgcacuaucggacaucaaauacga        ug             -      uac     ug 
                            gauauugg  cgguucaaucaga aaaccg   ucuuu  u
                            ||||||||  ||||||||||||| ||||||   |||||   
                            CUAUAACC  GCCGAGUUaguuu uuuggc   agaaa  u
-------------------auuugcGCA        GU             a      --u     uu 

>ath-MIR172c (-57.10)   [ath-miR172c:98-118]

        uuc  u    g                a  --a  -       uau  ---g       aa 
agcuacug   gc guug agcaucaucaagauuc ca   au caucaag   uc    uguaaau  a
||||||||   || |||| |||||||||||||||| ||   || |||||||   ||    |||||||   
ucggugac   cg cGAC UCGUAGUAGUUCUAAG gu   ua guaguuu   ag    guauuua  c
        uaa  u    G                A  aug  u       -uu  auua       cc 

>ath-MIR172d (-49.20)   [ath-miR172d:88-108]

       -gu    ua     a    u         ag        uucucu  u      uc 
agucauu   uugc  uugca cauc ucaagauuc  aaaucaga      ua ggguuu  u
|||||||   ||||  ||||| |||| |||||||||  ||||||||      || ||||||   
ucgguaa   aacg  GACGU GUAG AGUUCUAAG  uuugguuu      au uccgag  u
       auu    gc     C    U         Ag        ---uuu  u      uu 

>ath-MIR390a (-51.60)   [ath-miR390a:18-38]

    --      au u  a          G           --u   -   c  a 
guag  agaaga  c gu AAGCUCAGGA GGAUAGCGCCa   gau gau ac u
||||  ||||||  | || |||||||||| |||||||||||   ||| ||| ||  
cauc  ucuucu  g ua uuugaguccu ccuaucgcggu   uua cua ug u
    au      cg u  c          a           uuu   u   u  c 

>ath-MIR390b (-58.20)   [ath-miR390b:15-35]

     au      aA         G           uggcucaccagugcuguauguuu 
gagaa  agcuau  AGCUCAGGA GGAUAGCGCCa                       u
|||||  ||||||  ||||||||| |||||||||||                        
uucuu  ucgaua  uugaguccu ccuaucgcggu                       g
     cu      cc         a           ugucuauauguacaugcguauau 

>ath-MIR391 (-64.70)   [ath-miR391:68-88]

    --       cacau    g   ----     cu   u  a g  u    aac    a   -   au     U  C          G  C      -----cu      
uaga  gugauua     acaa ugg    ucuug  ucu cu u gu uuaa   ugca aua aag  uugcU CG AGGAGAGAUA CG CAucac       cuucu 
||||  |||||||     |||| |||    |||||  ||| || | || ||||   |||| ||| |||  ||||| || |||||||||| || ||||||       |||| a
aucu  cacuaau     uguu acu    ggaac  aga ga g ca aauu   acgu uau uuc  aacga gc uccucucuau gc guggug       gaaga 
    cc       -aacu    g   uuau     -u   -  - g  u    -cu    a   a   cu     u  a          g  a      aucaauu      

>ath-MIR393a (-47.00)   [ath-miR393a:11-32]

a     a              C    U     -u     aggugaauucuccccauauuuucuuua 
 gagga ggaUCCAAAGGGAU GCAU GAUCC  aauua                           u
 ||||| |||||||||||||| |||| |||||  |||||                           a
 uuccu cuuagguuucucua cgua cuagg  uuggu                           a
c     a              u    -     uu     ucguuuaaaaacacuaaauaaacgguu 

>ath-MIR393b (-57.90)   [ath-miR393b:11-32]

      a                   U     ---u  u     ugauuuauuccccaauaauuguuuuuuuuuuccuucu 
agagaa ggaUCCAAAGGGAUCGCAU GAUCC    aa uaagc                                     c
|||||| ||||||||||||||||||| |||||    || |||||                                      
uuucuu cuuagguuucucuagcgua cuagg    uu auucg                                     a
      a                   -     ccuu  c     uuuuacaaaccuuaaacaaaaagaagguagaaagcua 

>ath-MIR394a (-53.10)   [ath-miR394a:14-33]

  u    -  a   -      U C GU            -a     -au          a 
cu acag uc ucu UUGGCA U U  CCACCUCCuucu  uacau   augcaugugu u
|| |||| || ||| |||||| | |  ||||||||||||  |||||   ||||||||||  
ga uguc ag aga aaccgu a a  gguggaggaaga  gugug   ugcguauaua a
  u    u  -   u      c u ug            aa     cuu          u 

>ath-MIR394b (-53.10)   [ath-miR394b:14-33]

  u     ga   -      U C             ucucuauauuuauguguaauaagu 
cu acaga  ucu UUGGCA U UGUCCACCUCCuc                        g
|| |||||  ||| |||||| | |||||||||||||                         
ga ugucu  aga aaccgu a acggguggaggag                        u
  u     ag   u      c u             aaugcuuuguguggcaucuaugca 

>ath-MIR395a (-42.90)   [ath-miR395a:63-83]

   uc   ua         ug         u    gauaca    u 
aug  ucc  gaguuccuc  agcacuuca uggg      auuu u
|||  |||  |||||||||  ||||||||| ||||      ||||  
uac  agg  CUCAAGGGG  UUGUGAAGU accu      uaaa c
   cc   cc         GU         C    -auuag    u 

>ath-MIR395b (-44.10)   [ath-miR395b:70-90]

   u c   u         uu         u    aa    uca     a 
aug c cca gaguucccu  aacgcuuca uguu  auac   aagcc c
||| | ||| |||||||||  ||||||||| ||||  ||||   ||||| a
uac g ggu CUCAGGGGG  UUGUGAAGU acaa  uaug   uuugg u
   u u   u         GU         C    ca    ---     u 

>ath-MIR395c (-43.80)   [ath-miR395c:70-90]

   uc   -au         uu         u     a    uca     a 
aug  cac   gaguucccu  aacgcuuca uguug auac   aagcc c
|||  |||   |||||||||  ||||||||| ||||| ||||   ||||| a
uac  gug   CUCAGGGGG  UUGUGAAGU acaau uaug   uuugg u
   -u   guu         GU         C     a    ---     u 

>ath-MIR395d (-43.00)   [ath-miR395d:70-90]

   u c  ua         ug         u     --au      uuca 
aug c uc  gaguucucc  aacacuuca uggaa    uuguua    g
||| | ||  |||||||||  ||||||||| |||||    ||||||     
uac g ag  CUCAAGGGG  UUGUGAAGU accuu    gacaau    u
   u u  cc         GU         C     aauu      cgaa 

>ath-MIR395e (-39.50)   [ath-miR395e:65-85]

auguuu   -a         ug         u      u  a     u 
      ucu  gaguuccuc  agcacuuca uggaga ac auuuu u
      |||  |||||||||  ||||||||| |||||| || |||||  
      ggg  CUCAAGGGG  UUGUGAAGU aucuuu ug uaaaa a
-uaguc   cc         GU         C      -  a     u 

>ath-MIR395f (-54.10)   [ath-miR395f:82-102]

     c   u                    u       -acu   --uu   -   u 
auguc ccu gaguucccuuaaacgcuuca uguucau    uug    auc auc a
||||| ||| |||||||||||||||||||| |||||||    |||    ||| |||  
uacag gga CUCAGGGGGGUUUGUGAAGU acaagua    aac    uag uag u
     u   u                    C       gucu   uaac   c   c 

>ath-MIR396a (-51.40)   [ath-miR396a:11-31]

c       uc            C            a -u  -uu    uuuuuuuuuuuuucuuuugauaucucu 
 ucuguau  UUCCACAGCUUU UUGAACUGcaaa c  uc   caga                           u
 |||||||  |||||||||||| |||||||||||| |  ||   ||||                           a
 agacaua  agggugucgaaa aacuuggcguuu g  ag   gucu                           c
c       ga            u            a uu  cuc    cuauacuucuuuuagugauaaaauacg 

>ath-MIR396b (-48.00)   [ath-miR396b:11-31]

g     ac                   A     uuuuucauuuccauuguuuuuuucuuaaacaaa 
 gucau  uuUUCCACAGCUUUCUUGA CUUuc                                 a
 |||||  ||||||||||||||||||| |||||                                 g
 cagua  aaagggugucgaaagaacu gaagg                                 u
a     ca                   c     uuuuacgaauuagaauuucaaaaaaaagaagaa 

>ath-MIR397a (-42.80)   [ath-miR397a:11-31]

-u   u      C                A     u   g     uuu      g 
  gaa gaacaU AUUGAGUGCAGCGUUG UGuaa uuc uuuug   uucauu u
  ||| |||||| |||||||||||||||| ||||| ||| |||||   ||||||  
  cuu uuugua uaacucgcguugcgac auauu aag aaaau   agguaa u
au   -      u                c     u   -     --u      g 

>ath-MIR397b (-34.40)   [ath-miR397b:11-31]

-u   u      C          U          auuu     a   ----u    ca 
  gaa gaacaU AUUGAGUGCA CGUUGAUGua    uacuu uuu     auuc  u
  ||| |||||| |||||||||| ||||||||||    ||||| |||     ||||  u
  cuu uuugua uaacuuacgu gcgacuauau    augaa aaa     uaag  g
au   -      u          u          ----     g   uuaau    uu 

>ath-MIR398a (-39.84)   [ath-miR398a:75-95]

ugaaau        a     a  u       --ua  cu        uucaaa 
      uucaaagg guggc ug gaacaca    uc  augguuuc      u
      |||||||| ||||| || |||||||    ||  ||||||||       
      aaguUUCC CACUG AC CUUGUGU    ag  uaccaaag      u
cccucu        C     G  U       uuug  -u        uuaccu 

>ath-MIR398b (-51.50)   [ath-miR398b:86-106]

u   u    a     u    a          c   u   caac       ---        
 gga cucg caggg ugau ugagaacaca gag aau    ggcugua   augacgc 
 ||| |||| ||||| |||| |||||||||| ||| |||    |||||||   |||||| u
 ucu gagu GUCCC ACUG ACUCUUGUGU cuu uug    ucgacau   uacugca 
u   c    c     C    G          a   -   -cuc       ugu        

>ath-MIR398c (-46.10)   [ath-miR398c:85-105]

u   u    a     u    a         -----     caaucaac    a    ---      
 gga cucg caggg ugau ugagaacac     acgag        ggcu uaac   gacgc 
 ||| |||| ||||| |||| |||||||||     |||||        |||| ||||   |||| u
 ucu gagu GUCCC ACUG ACUCUUGUG     ugcuc        ucga auug   cugca 
u   c    c     C    G         Uacuu     --------    c    uua      

>ath-MIR399a (-51.60)   [ath-miR399a:93-113]

aaau c           a       a        a   -     c     -u uu     cu 
    g auuacagggua gaucucu uuggcagg aac cauua uuaga  c  ugcau  c
    | ||||||||||| ||||||| |||||||| ||| ||||| |||||  |  |||||   
    c uaauGUCCCGU UUAGAGG AACCGUcu uug gugau aauuu  g  acgua  u
ucuu u           -       A        a   a     u     uc uu     uu 

>ath-MIR399b (-61.00)   [ath-miR399b:105-125]

uc               c      a          c    cuuccaaauauacacauacauauaug 
  acuaguuuuagggcg cucucc uuggcagguc uuua                          a
  ||||||||||||||| |||||| |||||||||| ||||                          a
  uggucaaaGUCCCGU GAGAGG AACCGUccag aaau                          u
cu               U      A          u    auuuagcuaguagccuuuaaaagcua 

>ath-MIR399c (-57.89)   [ath-miR399c:84-104]

        a        u      a        c   u      uuu  aucuuuu 
ggagcagu auagggca cuuucu uuggcagg gac uggcua   gu       g
|||||||| |||||||| |||||| |||||||| ||| ||||||   ||        
cuucguca uGUCCCGU GAGAGG AACCGUuc cug aucggu   ca       u
        c        U      A        a   u      uau  guucuug 

>ath-MIR399d (-45.40)   [ath-miR399d:70-90]

  u      a u        a     a       -uc     -----g  ua 
gg uggauu c gggcgaau cuccu uggcaga   gcauu      gc  g
|| |||||| | |||||||| ||||| |||||||   |||||      ||  a
cc acuuaa G CCCGUUUA GAGGA ACCGUcu   cguaa      cg  u
  u      c C        -     A       cuu     aaugaa  ua 

>ath-MIR399e (-48.70)   [ath-miR399e:79-99]

-   a     a ag        c   a       u     u      -cccu  u 
 gaa gcauu c  ggcgaauc ucu uuggcag ggaag ugauga     ua a
 ||| ||||| |  |||||||| ||| ||||||| ||||| ||||||     || u
 cuu cguaa G  CCGUUUAG AGG AACCGUc ccuuu acuacu     au g
a   -     c CU        -   A       u     u      cuuuu  u 

>ath-MIR399f (-49.60)   [ath-miR399f:88-108]

auau c     a     a    a  a          u  -     -uu    cu       
    g auuac gggca gauc cc uuggcagaga cu auuac   cauu  ugcauc 
    | ||||| ||||| |||| || |||||||||| || |||||   ||||  ||||| a
    c uaauG CCCGU UUAG GG AACCGUcucu ga uggug   guaa  acguau 
uucu u     G     -    A  A          c  g     uuu    au       

>osa-MIR393 (-61.60)   [osa-miR393:11-31]

u        a                U     u   uc   -  ---------  cu    u 
 ggggaagc UCCAAAGGGAUCGCAU GAUCc uca  gcu cu         cg  cgcu c
 |||||||| |||||||||||||||| ||||| |||  ||| ||         ||  |||| c
 cuccuucg agguuuuccuagcgua cuagg agu  cga ga         gc  gcgg a
u        g                -     c   -u   c  acaucugcu  ug    u 

>osa-MIR394 (-45.84)   [osa-miR394:14-33]

ua   - g      -      U C           -uu     auccuca    ca 
  cug a aguucu UUGGCA U UGUCCACCUCC   gucga       gaga  g
  ||| | |||||| |||||| | |||||||||||   |||||       ||||   
  gau u ucgagg aaccgu a acggguggagg   uaguu       cucu  a
-g   g g      u      c u           uuc     gucuaua    aa 

>osa-MIR395b (-45.60)   [osa-miR395b:56-76]

ga u c             u                c   g a 
  g c cuaggaguuccuu caagcacuuuacgaca acu u u
  | | ||||||||||||| |||||||||||||||| ||| |  
  c g gauuCUCAAGGGG GUUUGUGAAGUGcugu uga a u
cg u u             -                -   g g 

>osa-MIR395d (-45.70)   [osa-miR395d:58-78]

  au     u         u              ----    cua 
gu  ugucg gaguucccu caagcacuucacgu    ggca   u
||  ||||| ||||||||| ||||||||||||||    ||||   c
ca  auagc CUCAAGGGG GUUUGUGAAGUGua    ccgu   u
  cu     u         -              ucau    aac 

>osa-MIR395e (-46.20)   [osa-miR395e:58-78]

  au               u   c         ----u   a  gu 
gu  uaucgagaguucccu caa cacuucacg     ggc cu  u
||  ||||||||||||||| ||| |||||||||     ||| ||   
ca  auagcuCUCAAGGGG GUU GUGAAGUGu     ccg ga  u
  cu               -   U         guuau   -  ac 

>osa-MIR395g (-42.50)   [osa-miR395g:56-76]

guau  c  u         u             --u    cua 
    ca cg gaguucccu cgaacacuucacg   ggca   u
    || || ||||||||| |||||||||||||   ||||   u
    gu gc CUCAAGGGG GUUUGUGAAGUGu   ccgu   u
uacu  a  u         -             uau    aac 

>osa-MIR395h (-57.10)   [osa-miR395h:82-102]

u                     c         -   ---   u    -  -    a aa 
 uguuaccuggaguuuccucaa acacuucac auc   ugc aggc cc uauu c  u
 ||||||||||||||||||||| ||||||||| |||   ||| |||| || |||| |   
 acgguggauCUCAAGGGGGUU UGUGAAGUG ugg   acg ucug gg guaa g  u
c                     -         a   uua   -    a  u    c cg 

>osa-MIR395i (-47.30)   [osa-miR395i:69-89]

guuu            u                 ------     uu     u 
    uaccgggaguuc cuucaagcacuucacgu      agagc  ucuau g
    |||||||||||| |||||||||||||||||      |||||  |||||  
    augguuCUCAAG GGGGUUUGUGAAGUGua      uuucg  aggua a
aacc            -                 acaaga     --     c 

>osa-MIR395j (-52.90)   [osa-miR395j:82-102]

    uc  a          g             -   aa     guuac     ugu 
gugu  cc agaguuccuu caagcacuucaca uag  cuucu     ucuca   a
||||  || |||||||||| ||||||||||||| |||  |||||     |||||    
cacg  gg uCUCAAGGGG GUUUGUGAAGUGu auc  gaaga     agggu   a
    gu  a          -             c   --     guuca     uac 

>osa-MIR395k (-46.20)   [osa-miR395k:69-89]

guuu           u                  ------       uc  u 
    uaucgggaguu ccuucaagcacuucacgu      agagcuu  ua u
    ||||||||||| ||||||||||||||||||      |||||||  ||  
    auaguuCUCAA GGGGGUUUGUGAAGUGua      uuucgag  au g
aacc           -                  acaagg       gu  a 

>osa-MIR395l (-44.80)   [osa-miR395l:74-94]

gc      u              c          ---uuuc     ca 
  guuccu ccaagcacuucaca agagcuuuua       ucuca  u
  |||||| |||||||||||||| ||||||||||       |||||  c
  CAAGGG GGUUUGUGAAGUGu uuucgaagau       agagu  g
CU      -              -          uaauuca     ua 

>osa-MIR395s (-42.80)   [osa-miR395s:56-76]

guau  c  u         u             --u    cua 
    ca cg gaguucccu caagcacuucacg   ggca   u
    || || ||||||||| |||||||||||||   ||||   u
    gu gc CUCAAGGGG GUUUGUGAAGUGu   ccgu   u
ccuu  a  u         -             uau    aac 

>osa-MIR395t (-61.60)   [osa-miR395t:113-133]

uuau   -        c         c      ---gc  a         --a        -ug   -----    cc 
    cca cuggaguu uccucaaac acuuca     ag uagcuagcu   ggccucau   cau     ugca  a
    ||| |||||||| ||||||||| ||||||     || |||||||||   ||||||||   |||     ||||  c
    ggu ggcCUCAA AGGGGUUUG UGAAGU     uc gucgauuga   ccggggua   gua     acgu  u
-aac   u        -         -      Gauau  -         aaa        cga   ucaau    ug 

>osa-MIR395c (-38.90)   [osa-miR395c:59-79]

guau    a       u                -    a  auua 
    uauc agaguuc cuuuaagcacuucaua cgac cc    u
    |||| ||||||| |||||||||||||||| |||| ||     
    gugg uCUCAAG GAGGUUUGUGAAGUGu guug gg    u
uacu    c       -                u    -  auau 

>osa-MIR395a (-69.20)   [osa-miR395a:112-132]

u    c             u   uc       --   g      au    --a        u c  ug  cu   a 
 uguc acuggaguucucc caa  cacuuca  gua auagcu  ggcu   ggccucau g au  ca  guu c
 |||| ||||||||||||| |||  |||||||  ||| ||||||  ||||   |||||||| | ||  ||  |||  
 acag ugacCUCAAGGGG GUU  GUGAAGU  uau uaucga  ucga   ccggggua c ua  gu  caa a
c    u             -   -C       Ga   g      --    aaa        - -  gu  --   u 

>osa-MIR395f (-36.00)   [osa-miR395f:55-75]

u     c         u   u  c           ---  au 
 uaucg ggguucccu caa ca uucacauggua   cu  u
 ||||| ||||||||| ||| || |||||||||||   ||   
 guagc CUCAAGGGG GUU GU AAGUGuaucau   ga  u
u     u         -   U  U           ccg  ac 

>osa-MIR395u (-28.70)   [osa-miR395u:56-76]

---      cca   a      u     aa     ga      auu 
   acacug   gga uucccu caagc  uucau  aacaau   u
   ||||||   ||| |||||| |||||  |||||  ||||||   u
   ugugac   uCU AAGGGG GUUUG  AAGUG  uuguug   g
cgc      ---   A      -     CG     --      aga 

>osa-MIR396a (-64.70)   [osa-miR396a:11-31]

     ug  c            C         acgcaugaugaauaaucccuuugguuaauugugaucuggucucu 
cuuug  au UUCCACAGCUUU UUGAACUGc                                            g
|||||  || |||||||||||| |||||||||                                             
gagac  ua agggugucgaaa aacuugacg                                            a
     gu  a            u         agagagacuacgguuacguuggcuagcucagauugaugcuagag 

>osa-MIR396b (-52.80)   [osa-miR396b:11-31]

         c            C           -   ---    ag     a    cc 
cuuuguggu UUCCACAGCUUU UUGAACUGcau cuu   ugag  agauu gcau  c
||||||||| |||||||||||| ||||||||||| |||   ||||  ||||| ||||   
gagacauua agggugucgaaa aacuugacgug gag   guuc  uuuag ugug  u
         a            u           u   cac    gu     g    ua 

>osa-MIR396c (-68.80)   [osa-miR396c:11-31]

u     gc                   A     -     --g    a   -----a     auu    ga  gau 
 gccau  cuUUCCACAGCUUUCUUGA CUUcu cuugu   ccuc cuc      cuuuc   acug  ga   a
 |||||  ||||||||||||||||||| ||||| |||||   |||| |||      |||||   ||||  ||    
 cggua  gaagggugucgaaagaacu ggaga gaacg   ggag ggg      gaagg   ugac  cu   u
a     aa                   g     a     uga    a   auauuc     ---    ua  acg 

>osa-MIR397a (-58.20)   [osa-miR397a:11-31]

a          C        C           acaa   -ua       -c    ug 
 ucaaaugcaU AUUGAGUG AGCGUUGAUGa    cgg   accgguc  augu  a
 |||||||||| |||||||| |||||||||||    |||   |||||||  ||||   
 gguuugcgua uaacucac ucgcgacuacu    guc   uggccgg  uacg  u
c          c        u           acua   uag       uu    cg 

>osa-MIR397b (-50.60)   [osa-miR397b:11-31]

  g      aUU    A      C    A       gcc    ggcuaaauuaauuag 
ag gaaggc   AUUG GUGCAG GUUG UGaaccu   ggcc               c
|| ||||||   |||| |||||| |||| |||||||   ||||                
uc uuuccg   uaac cacguc cgac acuugga   ucgg               a
  g      cac    c      a    c       aac    ucaaagucugaaaga 

>osa-MIR398a (-49.80)   [osa-miR398a:85-105]

gcu           a   gua            g   caauacaauguauggugagc 
   gaacccagagg gug   cugagaacacag ugc                    u
   ||||||||||| |||   |||||||||||| |||                     
   uuuggguUUCC CAC   GACUCUUGUGUc aug                    a
uuc           C   -UG            a   ucuuaaugagguaauauguc 

>osa-MIR398b (-62.20)   [osa-miR398b:58-78]

        ua         g              -u   g  g 
ggaguucc  caggggcga cugggaacacacgg  gau ag c
||||||||  ||||||||| ||||||||||||||  ||| || g
ucucaggg  GUCCCCGCU GACUCUUGUGUgcu  cug uc g
        cc         G              uu   g  u 

>osa-MIR399a (-69.50)   [osa-miR399a:119-139]

cugu    ua           a          aagggcaagcaguagaaaccaugcgugcuugcuagagcugg 
    gaau  cagggcaguuc ccuuuggcac                                         a
    ||||  ||||||||||| ||||||||||                                         a
    uuua  GUCCCGUUAAG GGAAACCGUg                                         a
cugu    gc           A          cucuagacacuagggacuugguacguuacgauggucguagu 

>osa-MIR399b (-44.40)   [osa-miR399b:67-87]

guga    ca   u           c          -  aga gc  aa 
    gaau  cag gcgauucuccu uggcauggca ug   g  cu  a
    ||||  ||| ||||||||||| |||||||||| ||   |  ||  a
    cuua  GUC CGUUAAGAGGA ACCGUgccgu ac   c  ga  a
aaga    cc   C           A          c  --g -a  ga 

>osa-MIR399c (-61.00)   [osa-miR399c:80-100]

c  c    ua          u               cgga   aa   au c   g 
 gg gaau  cagggcgguu cuccuuuggcacgua    ggc  ggc  g ggu a
 || ||||  |||||||||| |||||||||||||||    |||  |||  | ||| a
 cc cuua  GUCCCGUUAA GAGGAAACCGUgcgu    ccg  ucg  c cua a
a  a    gc          -               ---a   -a   au u   a 

>osa-MIR399d (-124.14)   [osa-miR399d:256-276]

        a     -          c        gcauucua     uuuuguaauuguauaugcauccaagguauauacaguccggccauggugcuacauugcaaucauccauaugugauugcauuguguauauauauacau 
aagacagu guagg cagcucuccu uggcaggu        gguga                                                                                                g
|||||||| ||||| |||||||||| ||||||||        |||||                                                                                                g
uucuguca cGUCC GUUGAGAGGA ACCGUccg        ccacu                                                                                                u
        g     C          A        --gcaaaa     uaaguuagcgauguaccgcuagcuaguuucgaucaucgucgaccauauauguauguacguguauugguuggcuauauacuaccagauaguuuccgg 

>osa-MIR399e (-55.30)   [osa-miR399e:88-108]

aca      a c   ug       c         uuc    c  ca  --       ug 
   ugcauu c ggg  agucuuc uuggcagug   gaau gg  gu  accgguc  c
   |||||| | |||  ||||||| |||||||||   |||| ||  ||  |||||||  a
   acguaa G CCC  UUAGAGG AACCGUcgc   cuug cc  ua  uggcuag  a
uca      c A   GU       A         -ca    a  ac  ac       ug 

>osa-MIR399f (-48.87)   [osa-miR399f:87-107]

ug       a c    cau        g       gu   c  --auu   cacuucac 
  guggauu c gggc   gucuccuu ggcagag  gau ag     gca        u
  ||||||| | ||||   |||||||| |||||||  ||| ||     |||         
  caccuaa G CCCG   UAGAGGAA CCGUcuc  uug uc     cgu        u
ua       c A    -UU        A       uc   u  gaucu   ucuccaac 

>osa-MIR399g (-61.30)   [osa-miR399g:89-109]

au   c     a      cua    a        --       -  ug  ua    uau   u 
  gug auugc gggcaa   cucc uuggcaga  gggaugg au  ga  ugga   ggc g
  ||| ||||| ||||||   |||| ||||||||  ||||||| ||  ||  ||||   |||  
  cac uagcG CCCGUU   GAGG AACCGUcu  cccuacc ua  uu  accu   ucg a
cu   u     A      -UA    A        au       c  gu  --    ---   u 

>osa-MIR399h (-59.84)   [osa-miR399h:69-89]

cca      a              c           ------------c    g 
   ugcauu cugggcaggucucc uuggcaguggc             gauc a
   |||||| |||||||||||||| |||||||||||             |||| g
   acguaa GACCCGUUCAGAGG AACCGUcaccg             cuag c
uag      c              A           aaaacgcaccaaa    u 

>osa-MIR399i (-50.04)   [osa-miR399i:86-106]

guga    ca   u           c     u    -   a  -  ------------g    g 
    gaau  cag gcaguucuccu uggca ggag ggc ag ag             agcu a
    ||||  ||| ||||||||||| ||||| |||| ||| || ||             ||||  
    cuua  GUC CGUCGAGAGGA ACCGU ccuu ccg uc uc             ucga a
guga    cc   C           A     c    u   a  g  aaauaguagguaa    u 

>osa-MIR399j (-55.60)   [osa-miR399j:76-96]

          c     uc     uc         a  ---au    ---   cuu 
aguccaguuu agggc  cucuc  uuggcaggg gc     guga   agu   u
|||||||||| |||||  |||||  ||||||||| ||     ||||   |||    
ucaggucaaa UCCCG  GAGAG  AACCGUcuc cg     uacu   ucg   u
          A     UU     GA         c  acuuu    cac   aug 

>osa-MIR399k (-42.70)   [osa-miR399k:76-96]

  c  c   g u         g           auguugcaguucaucaucg 
ag ug auu c gggcaaguu uccuuuggcag                   a
|| || ||| | ||||||||| |||||||||||                   u
uc ac uaa G CCCGUUUAA AGGAAACCGUc                   g
  u  u   g C         -           aucagaccauugggggucc 

>ebv-mir-BHRF1-1 (-25.50)   [ebv-miR-BHRF1-1:4-25]

-ua       GA    C     A    cc  uu 
   uUAACCU  UCAG CCCGG GUUg  ug  u
   |||||||  |||| ||||| ||||  ||   
   aguugga  aguc gggcc caau  ac  c
aac       ga    c     c    -c  ua 

>ebv-mir-BHRF1-2 (-27.10)   [ebv-miR-BHRF1-2*:6-27] [ebv-miR-BHRF1-2:41-62]

       A           C       ugau 
cuuuuAA UUCUGUUGCAG AGAUAGC    a
||||||| ||||||||||| |||||||    c
gaaAGUU AAGACGGCGUU UCUAUug    c
       A           U       uaac 

>ebv-mir-BHRF1-3 (-23.20)   [ebv-miR-BHRF1-3:3-24]

--uc      GA      U      Aca   aau 
    UAACGG  AGUGUG AAGCAC   cgu   u
    ||||||  |||||| ||||||   |||   u
    auugcu  ucgcac uucgug   gcg   g
uaaa      uc      -      ---   aac 

>ebv-mir-BART1 (-30.90)   [ebv-miR-BART1-5p:6-29] [ebv-miR-BART1-3p:42-63]

-   g --U U       -    AC        a  a 
 ggg g   C UAGUGGA AGUG  GUGCUGUG au c
 ||| |   | ||||||| ||||  |||||||| ||  
 ccc c   G AUCACCU UCGC  CACGAUac ug a
g   g uCU U       A    --        c  g 

>ebv-mir-BART2 (-25.90)   [ebv-miR-BART2-5p:3-24] [ebv-miR-BART2-3p:39-62]

ac        G  -U    -       uguc 
  UAUUUUCU CA  UCGC CCUUGCg    c
  |||||||| ||  |||| |||||||     
  AUAAAAGA GU  AGCG GGAAcgu    a
AA        G  UU    A       uguu 

>ath-MIR400 (-39.60)   [ath-miR400:12-32]

--u    a ug         G              a a    gu      a 
   gagg u  uuUAUGAGA UAUUAUAAGUCACu c uuug  aagcaa g
   |||| |  ||||||||| |||||||||||||| | ||||  ||||||  
   uuuu g  aaguacucu auaguauucaguga g aaac  uuuguu u
acg    a gu         a              a c    uc      g 

>ath-MIR401 (-70.80)   [ath-miR401:108-128]

uauauagacccuaaaaacgucca     u       caa   u   a  c  c         -c     cuucu a     u  a    uuuag     -uugc g   C  AACU        C      - a 
                       gggac aauaaug   aua gga au uu uggggcaaa  uugag     g aaacu ga agcg     gguuu     u ggc GA    GGUGUCGA CGACAc c a
                       ||||| |||||||   ||| ||| || || |||||||||  |||||     | ||||| || ||||     |||||     | ||| ||    |||||||| |||||| |  
                       cccug uuguuac   uau ccu ug aa accucguuu  gauuc     c uuuga uu uugc     ccaag     a ucg cu    ucacagcu gcugug g g
------------aagauacguua     -       cuc   u   c  u  a         uu     cuuuu c     -  c    uaaaa     uccuu g   -  --ac        c      u a 

>ath-MIR402 (-105.13)   [ath-miR402:67-88]

cguggua     -    -g   u            u   ccuuu     uuaacccauauuuuc           C    U           acaucu   -       --a    gucauuuuucugaaaucuucuugccucaauuuccaacagcagauucaucuu 
       gauaa guuu  agu gcauaguggcag cuu     guuug               augaUUCGAGG CUAU AAACCUCUGuu      gcu uuuugaa   aguu                                                   u
       ||||| ||||  ||| |||||||||||| |||     |||||               ||||||||||| |||| |||||||||||      ||| |||||||   ||||                                                   c
       cuauu caaa  uca cguaucaucguc gag     caaac               uacuaagcucc gaua uuuggggauaa      cga aaagcuu   ucag                                                   a
----aaa     u    ag   u            u   -----     -------------ua           a    -           aauuuc   u       cag    aauuaaagaaggguggaguaaaaaagauaguuuuugauugccuaguagguu 

>ath-MIR403 (-38.79)   [ath-miR403:103-123]

uugucauuaga    u  u     au    u    u                ggcuuuauguaagagauucu 
           agag cg auuac  guuu gugc ugaaucuaauucaaca                    u
           |||| || |||||  |||| |||| ||||||||||||||||                    u
           uuuc gu uaauG  CAAA CACG ACUUAGAUUagguugu                    a
-----------    u  c     CU    -    C                uguuucuaauauccuuaaca 

>ath-MIR404 (-87.20)   [ath-miR404:16-39]

uagca  -uu  uuu  UUAAC   G                           gug       a  cu  -c    g 
     ug   cg   cA     GCU GCGGUUGCGGCAGCggcugcgguagcg   gcggcaa ca  ac  gcag u
     ||   ||   ||     ||| |||||||||||||||||||||||||||   ||||||| ||  ||  ||||  
     gc   gc   gu     ugg cgccaacgccgucgccgacgccgucgc   cgccguu gu  ug  uguu u
--gca  uuu  -uu  uucuu   a                           aga       -  uu  cu    g 

>ath-MIR405a (-79.60)   [ath-miR405a:90-113]

uca      g       --acc    c       uaa        guuuaugauua               -              u 
   aaaugg uaaccca     caac caacuca   ucaaauga           aaugaguuauggguu gacccaacucauuu g
   |||||| |||||||     |||| |||||||   ||||||||           ||||||||||||||| ||||||||||||||  
   uuuacc auugggu     guug guugggu   aguuuacu           uuacUCAAUACCCAA CUGGGUUGAGUAaa u
--a      a       aaauu    a       ---        -----------               U              u 

>ath-MIR405b (-59.00)   [ath-miR405b:70-93]

uuaacccauuuaaca     accc         -----------                              a 
               auuca    aucaaauga           aaugaguuauggguuagacccaacucauuu a
               |||||    |||||||||           ||||||||||||||||||||||||||||||  
               ugagu    uaguuuacu           uuacUCAAUACCCAAUCUGGGUUGAGUAaa c
---------------     --au         caaauauuaau                              a 

>ath-MIR405d (-47.20)   [ath-miR405d:49-72]

acccaucaa    ---               -              u 
         auga   aaugaguuauggguu gacccaacucauuu g
         ||||   ||||||||||||||| ||||||||||||||  
         uacu   uuacUCAAUACCCAA CUGGGUUGAGUAaa u
------aaa    aau               U              u 

>ath-MIR406 (-35.40)   [ath-miR406:107-127]

uaaa    uaa          uca      agcacauaucaau    --       a     c    auuaguucuuaaa          agacaguaacuauucaaaUAGAAUG 
    gucu   uuuuuaguua   cgauuu             cuau  agauuug uuuuu uuuu             uuuugauuug                         C
    ||||   ||||||||||   ||||||             ||||  ||||||| ||||| ||||             ||||||||||                          
    uagg   aaaaaucaau   gcuaaa             gaua  ucugagc aaaaa aaaa             aaaacuaagc                         U
--gg    ---          -ua      ----------aau    cu       -     a    -------------          aaagaaagccuaaGACCUAAUGUUA 

>ath-MIR407 (-143.50)   [ath-miR407:72-92]

---                     c         u          caa                         a   A                    c    cc            a       a  c  a 
   ugggaaaaauguuaaaaaaau gccaacuuu aaaaauggga   aaaaaucgccaacuccugaaauguc UUU AAUCAUAUACUUUUGGUuga uuuu  agaaagauaaua agcaaag uu gu a
   ||||||||||||||||||||| ||||||||| ||||||||||   ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||  |||||||||||| ||||||| || || u
   accuuuuuuacaguuuuuuua cgguugaaa uuuuuacccu   uuuuuagugguugaggacuuuacag aaa uuaguguaugaaaacuaacu aaga  ucuuucuauugu ucguuuc aa ca c
gua                     a         c          -ac                         c   a                    c    aa            c       a  a  a 

>ath-MIR408 (-65.10)   [ath-miR408:120-140]

aag     auu    uu         --gaagac     --g u     ---        --------------------------       caa    a      auu   uuuac       uuaa 
   guuag   ggua  gcaaugaaa        aaagc   g aauga   gagagaga                          cagggaa   gcag gcaugg   gag     uaaaaca    a
   |||||   ||||  |||||||||        |||||   | |||||   ||||||||                          |||||||   |||| ||||||   |||     |||||||    c
   caauc   ucau  cguuauuuu        uuucg   c uuacu   cucucucu                          GUCCCUU   CGUC CGUAcc   cuc     guuuugu    g
--g     --g    --         aagguaac     aca u     uuc        cuuuauaucucuuuuuuucucccuCG       CUC    A      cau   ----u       cuca 

>ath-MIR156g (-49.90)   [ath-miR156g:11-30]

auaacga   C    -               a  u    cuuu   u     g 
       agg GACA GAAGAGAGUGAGCAC ca ggcu    uuc agcau c
       ||| |||| ||||||||||||||| || ||||    ||| |||||  
       ucc cugu cuucucucauucgug gu ucga    aag ucgua u
ucucucg   u    u               c  c    ----   c     c 

>ath-MIR156h (-42.00)   [ath-miR156h:12-31]

augaaaa   u  A      -            -a     g uua      ag 
       aug UG CAGAAG AAAGAGAGCACa  ccugg a   gcaaaa  a
       ||| || |||||| ||||||||||||  ||||| |   ||||||   
       uac ac gucuuc uuucucucgugu  gggcu u   cguuuu  u
gcguuac   c  c      c            ga     g ucc      ga 

>ath-MIR158b (-30.70)   [ath-miR158b:56-75]

   u u   cuu           cu     -a     ug   a 
auc c gug   cuuugucuaca  uuugg  aaagg  aug u
||| | |||   |||||||||||  |||||  |||||  |||  
uag g cau   GAAACAGAUGU  AAACC  uuuuc  uac a
   u c   aAC           --     CC     gu   u 

>ath-MIR159c (-91.00)   [ath-miR159c:195-215]

guguaac                -c      a         ---caa   ---uu      cuaaaau c            u  a   cu     a     a    gcggug    a 
       agaaggagcucccuuc  uccaaa cgaagagga      gau     gaggaa       g agaaucuaagag uc ugu  uccuc uagag gugc      uuaa a
       ||||||||||||||||  |||||| |||||||||      |||     ||||||       | |||||||||||| || |||  ||||| ||||| ||||      ||||  
       uuuUCCUCGAGGGAAG  AGGUUU gcuucucuu      cua     cucuuu       c ucuuagauucuc ag acg  agggg auuuc cacg      aguu g
cuucuuc                UU      -         cucuua   uacau      ---cucc -            c  c   uu     a     a    -aaaga    c 

>ath-MIR319c (-86.90)   [ath-miR319c:170-190]

    uau        a              u        gaaa      a gg           g   ac    c  uc  aa    c     ag   aac 
uaga   agaaggag uucuuucaguccag cauggaua    aagaag g  uagaaauaucu ccg  ucau ca  ca  cacu guggu  aga   g
||||   |||||||| |||||||||||||| ||||||||    |||||| |  ||||||||||| |||  |||| ||  ||  |||| |||||  |||   a
aucu   ucUUCCUC AGGGAAGUCAGGUU gugucuau    uucuuc c  guuuuuauaga ggc  agua gu  gu  guga cgcca  uuu   u
    uuu        G              u        ----      - ua           g   gu    a  gu  ca    -     aa   aaa 

>ath-MIR164c (-41.00)   [ath-miR164c:11-31]

ua    u  a     A  C              cacaaaugaaaucgauc 
  acac ug UGGAG AG AGGGCACGUGCGaa                 g
  |||| || ||||| || ||||||||||||||                  
  ugug ac accuc uc ucuugugcacgcuu                 g
uc    c  a     a  a              uuauacuaguuguucau 

>ath-MIR167c (-67.10)   [ath-miR167c:12-32]

c  g      -uU                  U    uc       ---     ----       uaguuaauaaauauuuuau 
 ca uagcag   AAGCUGCCAGCAUGAUCU Gucu  cucucuu   agguu    ucauaua                   a
 || ||||||   |||||||||||||||||| ||||  |||||||   |||||    |||||||                   u
 gu aucguc   uuugauggucguacugga caga  gagagag   uucga    aguauau                   a
-  a      cac                  u    ga       aga     uacu       uagaacauucuuguucuuu 

>ath-MIR172e (-53.90)   [ath-miR172e:95-115]

guaguc  a         c           a  aga    u  uu     ---   -uu   c 
      gc gaugcagca cauuaagauuc ca   gaug gg  cccuu   ugc   ucg c
      || ||||||||| ||||||||||| ||   |||| ||  |||||   |||   ||| u
      cg cUACGUCGU GUAGUUCUAAG gu   cuau cc  gggaa   acg   agc c
cauaaa  a         A           G  gag    u  uu     aag   ccu   u 

>osa-MIR156k (-61.40)   [osa-miR156k:11-31]

uu  ga ug        -   -G          --a   -     c      ga 
  ga  g  aUGACAGA AGA  AGAGAGCACA   ccc ggcag agcgac  c
  ||  |  |||||||| |||  ||||||||||   ||| ||||| ||||||  g
  cu  c  uacugucu ucu  ucucucgugu   ggg ccguc ucgcug  g
ac  gc gu        a   ag          gcc   a     u      gc 

>osa-MIR156l (-59.70)   [osa-miR156l:11-31]

gcuaggga  C       -    -               ucu   cuu       u g  -----------           gac 
        gc GACAGAA GAGA GUGAGCAUAuauagu   uuc   gcauaug g uc           auauguguguu   u
        || ||||||| |||| |||||||||||||||   |||   ||||||| | ||           |||||||||||   g
        cg cugucuu cucu cacucguguauaucg   aag   cguguac u ag           uauauacauag   a
cuauuaaa  a       u    u               ---   -uu       u g  agagagagaua           aga 

>osa-MIR159a (-114.70)   [osa-miR159a.2:201-221] [osa-miR159a.1:242-262]

guugu   c  u                  aa     u   gc   -    c   ug    g     u    g uc    u      cu   uguucaucauucagcucgagaucugaaagaaacuacuccaauuua 
     gga gu gagcuccuuucgguccaa  agggg guu  ugu gggu gau  agcu cuggg caug a  ccgu agccua  cca                                             u
     ||| || ||||||||||||||||||  ||||| |||  ||| |||| |||  |||| ||||| |||| |  |||| ||||||  |||                                              
     ucu cG CUCGAGGGAAGUUAGGUU  Ucucc cag  aca ccca cuA  UCGA GACCC GUAC U  ggua ucggau  ggu                                             a
uguuu   a  U                  --     -   gu   u    a   CG    G     C    G Uc    u      ag   uguugcucaugagguaguaaaaggauagauguguguaugauaauc 

>osa-MIR159b (-79.30)   [osa-miR159b:158-178]

     u  a ug            u     u  aa    uaucug    -  -   a a   g    u     guuc    uau        aua 
gguua ga g  gagcuccuuucg uccaa ga  gguu      aagg gu gau c gcu cuug ucaug    ccac   ucuaucuc   g
||||| || |  |||||||||||| ||||| ||  ||||      |||| || ||| | ||| |||| |||||    ||||   ||||||||   g
cuagu cu c  CUCGAGGGAAGU AGGUU cu  ccag      uucc ca cua g cga gaac aguac    ggug   ggauagag   a
     u  a GU            U     U  ca    ---ucg    u  a   a c   g    c     guuu    uuc        aaa 

>osa-MIR159c (-103.10)   [osa-miR159c:167-187]

   ga   a a                    u   g        ----    a  aug  g  g   au     g u    c  -       u   -a   a 
gag  gga g ggagcuccuuucgauccaau cag agaggaag    uggu gg   ca cu ccg  ucaug a accu ug gagugca ggc  gca u
|||  ||| | |||||||||||||||||||| ||| ||||||||    |||| ||   || || |||  ||||| | |||| || ||||||| |||  |||  
cuc  ucu c CCUCGAGGGAAGUUAGGUUA guu ucuccuuc    acca cc   gu ga ggc  aguac u uggg ac uucacgu ccg  ugu g
   uc   a A                    -   a        uguu    c  -aa  a  g   cc     g u    u  g       -   ga   c 

>osa-MIR159d (-100.10)   [osa-miR159d:159-179]

ugau   -  ga                    u   g       ----    ug  aug  g  g    u     g u    c    -  u  u   g 
    gug ag  ggagcuccuuucgauccaau cag agaggaa    gugg  gg   ca cu ccgg ucaug a accu ugca gu ca gcc g
    ||| ||  |||||||||||||||||||| ||| |||||||    ||||  ||   || || |||| ||||| | |||| |||| || || |||  
    cac uc  CCUCGAGGGAAGUUAGGUUA guu ucuccuu    uacc  cc   gu ga gguc aguac u uggg acgu ca gu cgg u
-auc   a  gG                    -   a       gugu    gu  -aa  a  g    c     g u    u    u  c  c   a 

>osa-MIR159e (-89.20)   [osa-miR159e:161-181]

g   a  -a   a          u         u   g        ----   ua  aug  g  g   gu     g u    c    - u c     a 
 aug ag  aga gagcucccuu cgauccaau cag agaggaag    ugg  gg   ca cu ccg  ucaug a accu ugga g g agggc a
 ||| ||  ||| |||||||||| ||||||||| ||| ||||||||    |||  ||   || || |||  ||||| | |||| |||| | | ||||| a
 uac uc  ucU CUCGAGGGAA GUUAGGUUA guu ucuccuuc    acc  cc   gu ga ggc  aguac u uggg acuu c c uccug u
-   a  ga   C          -         -   a        uguu   gc  -aa  a  g   uc     g u    u    u c a     a 

>osa-MIR159f (-95.50)   [osa-miR159f:158-178]

gaagaagaagac                  uc  g         ----    a  aug  g  g    u     g u    c    -     u  c 
            gagcucccuucgauccaa  ca gagaggaag    uggu gg   ca cu ccgg ucaug a accu ugca gugca gu g
            ||||||||||||||||||  || |||||||||    |||| ||   || || |||| ||||| | |||| |||| ||||| || u
            CUCGAGGGAAGUUAGGUU  gu uucuccuuc    acca cc   gu ga ggcc aguac u uggg acgu cacgu cg a
cucucuccacAU                  -C  a         uguu    c  -aa  a  g    c     g u    u    u     u  g 

>osa-MIR319a (-101.50)   [osa-miR319a:162-181]

---  u     aa a    u            cu u        u        --uua      g   aa       u  ac         aagu    g 
   ug guaag  g gagc cucuucagucca  c cagauggc guaggguu     uuagcu ccg  ucaucca uc  cuaccaaga    ugca g
   || |||||  | |||| ||||||||||||  | |||||||| ||||||||     |||||| |||  ||||||| ||  |||||||||    ||||  
   ac cguuC  C CUCG GGGAAGUCAGGU  g guuugccg cgucucga     aaucga ggc  aguaggu ag  gaugguucu    augu a
cga  u     -- -    U            Ug u        -        uuuaa      g   gc       c  gc         --cu    g 

>osa-MIR319b (-99.20)   [osa-miR319b:168-187]

--  u   u   a a    gu           cu  u         ua      -   --  g  g   ac        c  ca   c    aagaaa    ug 
  ga gga gga g gagc  ccuucagucca  ca gggcggugc  gggucg aau  ua cu ccg  ucauucac ca  ugc aagc      cgcu  a
  || ||| ||| | ||||  |||||||||||  || |||||||||  |||||| |||  || || |||  |||||||| ||  ||| ||||      ||||   
  cu ccu ccu C CUCG  GGAAGUCAGGU  gu ucugccgcg  ucuagc uug  au ga ggc  aguaagug gu  acg uucg      gcga  g
ag  -   -   C -    UG           Uc  u         -c      c   ca  g  g   ga        a  ag   a    ----aa    ua 

>osa-MIR160e (-59.10)   [osa-miR160e:11-31]

gua    a     C    U  C         cu    ug  u      cc     acu 
   gggg uaUGC UGGC CC UGUAUGCCG  cgca  gc gccaac  aauga   c
   |||| ||||| |||| || |||||||||  ||||  || ||||||  |||||    
   uccc guacg accg gg gcgugcggc  gcgu  cg cgguug  uugcu   g
uuc    g     a    u  a         au    --  c      --     cua 

>osa-MIR160f (-60.40)   [osa-miR160f:11-31]

-  auu   g    C         G       u   a      u    - u 
 gg   aac cUGC UGGCUCCCU AAUGCCA ccg gaagcg gccg c g
 ||   ||| |||| ||||||||| ||||||| ||| |||||| |||| |  
 uc   uug gacg acugaggga uuacggu ggu cuucgu cggc g u
c  -gu   g    u         g       u   c      -    c g 

>osa-MIR162b (-52.70)   [osa-miR162b:104-124]

u      ugc    gc    u            uc    c   c     -cugc  --c     au  c 
 ggguga   cugg  gcag gguuuaucgauc  uucc ugc uugug     uc   gaucg  gc c
 ||||||   ||||  |||| ||||||||||||  |||| ||| |||||     ||   |||||  ||  
 uucacu   GACC  CGUC CCGAAUAGCUag  aagg acg aacau     ag   uuagu  cg g
u      cua    UA    U            cu    -   c     auaau  uuc     --  u 

>osa-MIR164c (-55.32)   [osa-miR164c:11-31]

-     cu  u        CA           aaaugca    --     g  -     aau 
 agguu  ug UGGAGAAG  GGGUACGUGCA       cacc  gguug uc gagcu   u
 |||||  || ||||||||  |||||||||||       ||||  ||||| || |||||    
 uccgg  ac accucuuc  cucgugcacgu       gugg  ccagc ag cucga   a
u     -u  c        cc           -aagcua    ua     -  u     aca 

>osa-MIR164d (-61.10)   [osa-miR164d:11-31]

caaa              C  G         cgacg     g      g 
    ccgugcUGGAGAAG AG GCACGUGCU     gcggg cuggcu g
    |||||||||||||| || |||||||||     ||||| ||||||  
    gguacgaccucuuc uc cguguacga     cguuc ggccgg c
cuuc              c  g         -----     -      c 

>osa-MIR164e (-83.10)   [osa-miR164e:11-31]

uu    ag          CA                     guguagcuucgcugcgcguccaug 
  gugc  ggUGGAGAAG  GGGCACGUGAGcggccaucca                        g
  ||||  ||||||||||  |||||||||||||||||||||                         
  cacg  ccaccucuuc  ccuguguacuugcugguaggu                        c
gu    ag          ug                     uugaggucuagugcgcgcaagcgg 

>osa-MIR166j (-64.61)   [osa-miR166j:115-135]

agaua     uu      c          a            -------      -g  -      --a       u 
     ggugu  ggaaug aguuugaucc agaucugccuau       auauau  gu guguau   ucauauc u
     |||||  |||||| |||||||||| ||||||||||||       ||||||  || ||||||   |||||||  
     ccaca  CCUUAC UCGGACUAGG Ucuagauggaug       ugugug  ca cguaua   gguauag g
-----     CU      U          C            gggacag      ga  a      ggg       u 

>osa-MIR166k (-69.40)   [osa-miR166k:97-117]

auua          u   uu      cu      a      acuccgguuucuccuuuccuac 
    gguuaagggg uug  gucugg  cgaggc uccggg                      u
    |||||||||| |||  ||||||  |||||| ||||||                       
    ccaauuUCCC AAC  CGGACC  GCUccg aggcuc                      g
cgua          U   UU      AG      -      gagcggccuuuaauccgcggag 

>osa-MIR166l (-59.40)   [osa-miR166l:87-107]

-   a              uu         a     u   --   --     -aaa   uu 
 guu gguuaaggggauug  gucugguuc agguc cca  cau  ugugc    aug  c
 ||| ||||||||||||||  ||||||||| ||||| |||  |||  |||||    |||   
 cga ccaauuUCCCUAAC  CGGACCAGG Ucuag ggu  gua  acacg    uac  a
a   -              UU         C     u   uc   gg     gagg   uu 

>osa-MIR167d (-52.30)   [osa-miR167d:11-31]

   u  g  c         -              gagugcuuauuaggugaggg 
cau ag ag UGAAGCUGC CAGCAUGAUCUGau                    c
||| || || ||||||||| ||||||||||||||                    a
gug uc uc acuuugacg gucguacuagacua                    g
   u  g  u         u              gaaacaaaaccgucaguuaa 

>osa-MIR167e (-100.30)   [osa-miR167e:11-31]

u        a         C             ugucaggcaugagccaaaucuauccaugguguuggugguacugaaauuaccgcguuuucgagguuuuucgucgugucaacuugcgaagggaauuacggguucu 
 gugagaga UGAAGCUGC AGCAUGAUCUGgu                                                                                                       u
 |||||||| ||||||||| |||||||||||||                                                                                                        
 cacucucu acuucgacg uuguacuagacua                                                                                                       g
c        c         -             ccucgguuuaagguuagugaggguggagaaugacuuugaguguucuuguuaguauuaagauggagaugauugguucggguguggaggauagugguuacgagua 

>osa-MIR167f (-50.00)   [osa-miR167f:11-31]

  ca  u               C          caca   gu       c ga  aug 
ca  ag ggaUGAAGCUGCCAG AUGAUCUGau    gua  ucucuag u  ug   a
||  || ||||||||||||||| ||||||||||    |||  ||||||| |  ||    
gu  uc ucuacuuugacgguc uacuagacua    cgu  agagauc a  ac   u
  ac  u               -          ----   ac       c aa  auu 

>osa-MIR167g (-40.50)   [osa-miR167g:11-31]

   a  c             A C         aa  aucu 
cau ag aggUGAAGCUGCC G AUGAUCUGa  gc    c
||| || ||||||||||||| | |||||||||  ||    a
gua uc ucuacuucgacgg c uacuagacu  cg    a
   c  u             c -         ag  acca 

>osa-MIR167h (-47.16)   [osa-miR167h:11-31]

c  a   u           C             ga    ga      -accucuc   ucug 
 ac agu ggUGAAGCUGC AGCAUGAUCUGau  ugau  ugaucc        uca    u
 || ||| ||||||||||| |||||||||||||  ||||  ||||||        |||     
 ug ucg cuacuuugaug ucguacuggacua  gcua  acuagg        agu    g
u  g   u           -             --    --      cauuaauu   ucuu 

>osa-MIR167i (-90.70)   [osa-miR167i:11-31]

u       gc         C              c     uugcacugcugaauauauugaauucagccaggagcugcuacugcaguucugaucucgauc 
 gugagag  UGAAGCUGC AGCAUGAUCUGguc augag                                                            u
 |||||||  ||||||||| |||||||||||||| |||||                                                             
 cacucuc  acuucgacg uuguacuagacuag uacuu                                                            g
u       uc         -              c     uaauuucuguaccuacggaaguuuggcuaguuuagguauguaucgagucuuguugcuuac 

>osa-MIR168a (-52.20)   [osa-miR168a:11-31] [osa-miR168a-3p:56-79]

  c   g gc             AU     C   cc   g   c 
cg cuc g  UCGCUUGGUGCAG  CGGGA ccg  gcc ccg u
|| ||| |  |||||||||||||  ||||| |||  ||| |||  
gc gag c  AGUGAACCACGUU  GCCCU Ggc  cgg ggc g
  c   g UA             CC     A   --   -   c 

>osa-MIR168b (-38.20)   [osa-miR168b:11-31]

--u   cuu u    CU  G      U     Acu  ucu  a     -   c    
   ggu   g gAGG  UG UGCAGC CGGGA   gu   ug uggac ugg agg 
   |||   | ||||  || |||||| |||||   ||   || ||||| ||| || a
   ccg   c cucc  ac guguug guccu   cg   ac accug acc uca 
uug   -uu -    uu  g      u     cac  -uc  c     u   -    

>osa-MIR169b (-63.40)   [osa-miR169b:11-31]

     ga   C         UG         uac    au     uu  aagguacuauaugu 
gaacg  aug AGCCAAGGA  ACUUGCCGG   gugu  gcaug  uc              g
|||||  ||| |||||||||  |||||||||   ||||  |||||  ||               
cuugu  ugc ucgguuccu  ugaacggcc   uaca  cguac  ag              c
     uc   a         gu         uuu    gu     cu  auuuugucaacccc 

>osa-MIR169c (-56.70)   [osa-miR169c:11-31]

-gaac   a  C          -            ccuggua  g    aauc       
     ggg ug AGCCAAGGAU GACUUGCCGGcu       uu gggg    ucagcu 
     ||| || |||||||||| ||||||||||||       || ||||    ||||| u
     ucc ac ucgguuccug cugaacggccga       ag uucc    agucgu 
cucga   -  a          u            ----uug  g    gcga       

>osa-MIR169d (-46.02)   [osa-miR169d:11-31]

auuuau         AA      A           -----------u     uguu 
      cgugUAGCC  GGAUGA UUGCCGGcguu            cacgc    g
      |||||||||  |||||| |||||||||||            |||||     
      guacaucgg  uuuacu aacggccgcgg            gugcg    a
ccguuu         ac      g           uugaauauauac     uggu 

>osa-MIR169e (-59.50)   [osa-miR169e:11-31]

gcu      ---           ---           -  -  gu   --ugu    -  --     c    a 
   gguugu   gUAGCCAAGGA   UGACUUGCCGG cc ug  uug     ucau ca  gcaau cagc u
   ||||||   |||||||||||   ||||||||||| || ||  |||     |||| ||  ||||| ||||  
   ccaaca   caucgguuucu   auugaacggcc gg ac  agc     agug gu  cguua gucg a
---      uua           uuu           a  u  gu   uagcu    u  gc     u    u 

>osa-MIR169f (-68.70)   [osa-miR169f:11-31]

g   a     -          U   U    UAaugccuaugugcauguguuuauacgcugcucaucugcauuuugauuauccccu 
 cug uucgg UAGCCAAGGA GAC UGCC                                                       g
 ||| ||||| |||||||||| ||| ||||                                                        
 ggc aggcu aucgguuccu cug acgg                                                       a
-   g     u          u   u    auauauacauacucaugucucaugauguguguguauauuaacugcuguccugacu 

>osa-MIR169g (-67.40)   [osa-miR169g:11-31]

cu   u  --   -         U    U       -gu    u       g u  -  u     ga 
  gcc cu  ggU AGCCAAGGA GACU GCCUAuu   gcuc ucugaau a gc ag gccau  u
  ||| ||  ||| ||||||||| |||| |||||||   |||| ||||||| | || || |||||  c
  cgg ga  ccg ucgguuccu cuga cggauag   cgag agacuug u cg uc cggug  a
--   u  gu   a         -    -       agc    u       g -  g  -     ug 

>osa-MIR169h (-58.36)   [osa-miR169h:11-31]

uua    u   -         U    U       -uc     g  u          aauuau 
   gcuc ggU AGCCAAGGA GACU GCCUGug   cuugu ug aaggaucauu      u
   |||| ||| ||||||||| |||| |||||||   ||||| || ||||||||||      a
   ugag ccg ucgguuccu cuga cggguac   ggacg ac uuccuaguaa      u
uag    u   a         -    -       uuu     -  u          aagacu 

>osa-MIR169i (-52.20)   [osa-miR169i:11-31]

gua    u  -          U    U       uc  u  gua    a     c 
   gcuc gg UAGCCAAGGA GACU GCCUGug  cu gu   gagg ucauu a
   |||| || |||||||||| |||| |||||||  || ||   |||| ||||| g
   ugag cu aucgguuccu cuga cggauac  gg ca   uucc aguaa a
-gc    u  g          -    -       uu  u  -ag    g     a 

>osa-MIR169j (-61.50)   [osa-miR169j:11-31]

-    a  u   -         U    U       ucucug u         -u  a  -a   ug 
 ucgc uc ggU AGCCAAGGA GACU GCCUGug      c caugugcag  ag ag  aga  c
 |||| || ||| ||||||||| |||| |||||||      | |||||||||  || ||  |||   
 ggcg ag ccg ucgguuccu cuga cggacac      g guauacguc  uc uc  ucu  a
c    -  u   a         -    -       --ucua u         uu  g  ga   uu 

>osa-MIR169k (-73.70)   [osa-miR169k:11-31]

u          -         U    U      -- gc   u  g    ag     u   uuaauuag    a   u ug     
 cugucuagaU AGCCAAGGA GACU GCCUGu  g  cuc ug agag  aggug agc        cagc ugg u  agca 
 |||||||||| ||||||||| |||| ||||||  |  ||| || ||||  ||||| |||        |||| ||| |  ||| u
 ggcgggucug ucgguuccu cuga cggaca  c  gag ac ucuc  uucgc ucg        guug gcu a  ucgu 
c          a         -    -      uu ua   u  g    -g     u   -----cua    -   - gu     

>osa-MIR169l (-49.60)   [osa-miR169l:11-31]

uuau   -uga          U    U       -u  uc c          gca 
    cuc    UAGCCAAGGA GACU GCCUGug  cc  c ugaaggauua   a
    |||    |||||||||| |||| |||||||  ||  | ||||||||||   u
    gag    aucgguuccu cuga cggguac  gg  g auuuccuagu   u
-ggu   uccg          -    -       uu  uc a          aau 

>osa-MIR169m (-64.40)   [osa-miR169m:11-31]

-ug  u  u   -         U    U        auuuau             u  gaucaauggauggau 
   ag cc ggU AGCCAAGGA GACU GCCUGuau      auauauaugugug gu               u
   || || ||| ||||||||| |||| ||||||||      ||||||||||||| ||               g
   uc gg ccg ucgguuccu cuga cggacaug      uauauauacguac cg               a
cca  -  c   a         -    -        ------             u  gacguucgucgaacu 

>osa-MIR169n (-82.80)   [osa-miR169n:11-31]

cu  -       -         U    U        guuuu   u   guug  u        caucuaucagccguugcagauuugcagugg 
  cc cuuuggU AGCCAAGAA GACU GCCUAugu     gcc ugu    gc cauccauc                              c
  || ||||||| ||||||||| |||| ||||||||     ||| |||    || ||||||||                               
  gg gagaccg ucgguucuu cugg cggguacg     cgg gua    cg guagguag                              a
-c  u       a         -    c        ----u   u   ---a  u        uguucuuaaagaaagacuuugggaaauuag 

>osa-MIR169o (-81.90)   [osa-miR169o:11-31]

cu  -       -         U    U     c  uuuu   c  uguug  u     -   cgucuaucuaucugccauggcagauggc 
  cc cuuuggU AGCCAAGAA GACU GCCUA gc    gcc uc     gc caucc auc                            a
  || ||||||| ||||||||| |||| ||||| ||    ||| ||     || ||||| |||                             
  gg gagaccg ucgguucuu cugg cgggu cg    cgg ag     cg guagg uag                            g
-c  u       a         -    c     a  ---u   -  --uaa  u     a   uguucuuaaagaaagucuuugggaauua 

>osa-MIR169p (-62.16)   [osa-miR169p:11-32]

     a              CAA         aucaacagagaaggacugccagucuccggc 
gagca ggugUAGCCAAGGA   ACUUGCCGG                              c
||||| ||||||||||||||   |||||||||                              a
cucgu cuacgucgguuccu   ugaacggcc                              a
     c              -ac         ggccgcuaccggcugccgcuccaauuaauu 

>osa-MIR169q (-40.20)   [osa-miR169q:11-31]

-cca   a  c          -    -   CA  aa  ag   a      ---  uu 
    cuc gg UAGCCAAGGA GACU GCC  UG  cc  cuu aaggau   ca  a
    ||| || |||||||||| |||| |||  ||  ||  ||| ||||||   ||   
    gag cu aucgguuccu cuga cgg  ac  gg  gga uuccua   gu  a
aaua   a  -          a    a   ac  -a  ag   c      auc  ua 

>osa-MIR171b (-56.30)   [osa-miR171b:70-90]

---      acgg        g               -  cuu u     gga 
   gcgacg    gauauugg gcgguucaaucagaa ag   g gcucc   a
   ||||||    |||||||| ||||||||||||||| ||   | |||||    
   cgcugc    CUAUAACC UGCCGAGUUAGUuuu uc   c cgagg   g
cua      ---a        G               c  -au u     agc 

>osa-MIR171c (-51.50)   [osa-miR171c:69-89]

gu  ga   g        ug             a  cuu u     gaa 
  gg  acg gauauugg  cgguucaaucaga ag   g gcucc   g
  ||  ||| ||||||||  ||||||||||||| ||   | |||||    
  cc  ugc CUAUAACC  GCCGAGUUAGUuu uc   c cgggg   g
uu  gc   a        GU             c  -ac u     agc 

>osa-MIR171d (-56.20)   [osa-miR171d:105-125]

uugua   au         c       c     ----------    u   c g    -ga   g     ga 
     gcu  gauguuggc cggcuca ucaga          ugga cau g ugca   aga ugcau  a
     |||  ||||||||| ||||||| |||||          |||| ||| | ||||   ||| |||||  u
     cga  CUAUAACCG GCCGAGU AGUcu          accu gua u augu   ucu acgua  c
uacca   cu         U       U     ucaaggucgu    c   - g    gac   g     gu 

>osa-MIR171e (-58.90)   [osa-miR171e:89-109]

-u    g   u         u       c     c     uggc    u  ---a       c 
  ggua cua gauguuggc cggcuca ucaga ggcau    guga gc    aagcaug a
  |||| ||| ||||||||| ||||||| ||||| |||||    |||| ||    |||||||  
  ucgu gau CUAUAACCG GCCGAGU AGUcu uugug    cacu cg    uucgugc u
uc    -   u         U       U     -     --uu    -  aucg       g 

>osa-MIR171f (-62.10)   [osa-miR171f:97-117]

 g   ag  c                     a          c      acuagcuaagcaa 
g gag  ug gauguuggcaugguucaauca accgggcaaa uuaugc             g
| |||  || ||||||||||||||||||||| |||||||||| ||||||             a
c uuc  ac CUAUAACCGUGCCGAGUUAGU ugguuuguuu gguaug             u
 g   ga  a                     c          u      acguauagggacg 

>osa-MIR171g (-46.60)   [osa-miR171g:59-79]

       ca        a             agcaa    aaa   c 
gacaugg  ugguauug cuuggcucaucuc     cagc   cug a
|||||||  |||||||| |||||||||||||     ||||   |||  
cuguacu  aCUAUAAC GAGCCGAGUGGAG     gucg   gac u
       uc        C             -----    --c   g 

>osa-MIR172a (-49.20)   [osa-miR172a:79-99]

g         gc ug               a  u   ---------------   auauau 
 uguuugcgg  g  gcaucaucaagauuc ca cca               ugc      c
 |||||||||  |  ||||||||||||||| || |||               |||       
 acagacgcc  C  CGUAGUAGUUCUAAG gu ggu               acg      a
a         UA GU               A  c   uuagccuacauauac   cagaac 

>osa-MIR172b (-96.81)   [osa-miR172b:208-228]

g          c ug               --      uacau       augcauaugucuaugcaucuuugagcuuguuguucugaucucaacaaccuagcuagcuaauauuucucu 
 ugauuucuga g  gcaucaucaagauuc  acacau     ugcaugc                                                                     c
 |||||||||| |  |||||||||||||||  ||||||     |||||||                                                                      
 auuaaaggcU C  CGUAGUAGUUCUAAG  ugugua     guguacg                                                                     c
a          A GU               Gg      uauau       caaauuaaucgaagcuagagagagaagagagagguacgcacguugguacguaguacguccagucccggu 

>osa-MIR172c (-61.70)   [osa-miR172c:81-101]

   g    g                         gugccgcacggcacacguau 
cuu uugc ggugcagcgucaucaagauucacgu                    c
||| |||| |||||||||||||||||||||||||                    g
gag aacg cCACGUCGUAGUAGUUCUAAGUgcg                    g
   a    a                         ugcuacugaugugaacuuuu 

>osa-MIR166g (-70.60)   [osa-miR166g:115-135]

          cu         g   a   a     auugcuuggugcaaaauacuagggcauuguuguaag 
agcauggugu  ggaauggag cug ucc agauc                                    u
||||||||||  ||||||||| ||| ||| |||||                                    g
ucgugccaca  CCUUACUUC GAC AGG Ucuag                                    c
          CU         G   C   C     gagcuauuguuugagccuuuguuuuuucuugauuac 

>osa-MIR166h (-67.50)   [osa-miR166h:89-109]

gg                uu g    cu   g  a       cuuaau   ucu     ga 
  uggcuuguggggaaug  g cugg  cga gu uccacau      ucc   ccggc  u
  ||||||||||||||||  | ||||  ||| || |||||||      |||   |||||   
  gccgaacgCUCCUUAC  C GACC  GCU cg aggugug      ggg   ggccg  c
ua                UU G    AG   g  a       -----c   cuc     ag 

>osa-MIR166i (-66.31)   [osa-miR166i:115-135]

agaua     uu      c          a            -------      -g  -      --a       u 
     ggugu  ggaaug aguuugaucc agaucugccuau       auauau  gu guguau   ucauauc u
     |||||  |||||| |||||||||| ||||||||||||       ||||||  || ||||||   |||||||  
     ccaca  CCUUAC UCGGACUAGG Ucuagauggaug       ugugug  ca cguaua   gguauag g
cauaa     CU      U          C            gggacag      ga  a      ggg       u 

>hsa-mir-384 (-15.00)   [hsa-miR-384:57-76]

u    aau    a   uua       c   -----   aa    uau 
 guua   cagg auu   aacaauu cua     gac  uaug   a
 ||||   |||| |||   ||||||| |||     |||  ||||   a
 caau   gucc uaA   UUGUUAA GAU     cug  auac   u
a    ---    g   UAC       A   CCUUA   -a    uug 

>mmu-mir-384 (-28.10)   [mmu-miR-384-5p:16-38] [mmu-miR-384-3p:57-78]

u    aau    a     A       C     C    -Ug   aa 
 guua   cagg auUGU AACAAUU CUAGG AAUG   uau  u
 ||||   |||| ||||| ||||||| ||||| ||||   |||  g
 caau   gucc UAACA UUGUUAA GAUCC UUAc   aug  u
a    ---    g     C       A     -    uga   gu 

>osa-MIR171h (-44.50)   [osa-miR171h:54-74]

----------a   -      g      uu        u             guu 
           gaa gaagag acaugg  ugguauug uucggcucauguc   c
           ||| |||||| ||||||  |||||||| |||||||||||||   a
           cuu cuucuu uguacU  ACUAUAAC AAGCCGAGUGuag   c
ucuucaagaga   a      a      -C        C             aca 

>osa-MIR393b (-58.50)   [osa-miR393b:27-48] [osa-miR393b-3p:103-123]

ucggccugaggaaacua u      c           C         U gc  -  -ua  -   a       cc 
                 g ggagga UCCAAAGGGAU GCAUUGAUC g  ua gc   uc ucg ucgaucg  u
                 | |||||| ||||||||||| ||||||||| |  || ||   || ||| |||||||   
                 c ccuuuU AGGUUUCCCUA CGUGACUag c  gu cg   ag agc agcuagc  c
---------------uu u      A           A         - ua  g  ugc  c   -       ua 

>osa-MIR408 (-87.80)   [osa-miR408:153-173]

-------     uucu u  uu -      -----  a    a      u       a   u    u     uau      auguagauuauuccuugcacaagagaugauga 
       gggag    g ga  g gagagg     ag ggag caggga gaggcag gca ggga ggggc   caacag                                u
       |||||    | ||  | ||||||     || |||| |||||| ||||||| ||| |||| |||||   ||||||                                 
       cucuc    c cu  c cucucc     uc ccuC GUCCCU CUCCGUC CGU cccu ccucg   guuguu                                g
ugugucu     -ucu u  cu u      acacg  c    G      U       A   C    c     -uu      guggucgguagagagucuugaguaagugucga 

>hsa-mir-196b (-34.30)   [hsa-miR-196b:15-36] [hsa-miR-196b*:50-71]

--     uc      uU       U  C           ucca 
  acugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
  |||||  ||||||  ||||||| || |||||||||||     
  ugacu  ucauua  UCCGUCA AG ACGACAGCUcu    c
gu     --      CU       C  C           cuuu 

>mmu-mir-196b (-35.80)   [mmu-miR-196b:16-37]

-      uc      uU       U  C           ucca 
 aacugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
 ||||||  ||||||  ||||||| || |||||||||||     
 uugacu  ucauua  uccguca ag acgacagcucu    c
g      --      cu       c  c           cuuu 

>rno-mir-196b (-35.80)   [rno-miR-196b:16-37]

-      uc      uU       U  C           ucca 
 aacugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
 ||||||  ||||||  ||||||| || |||||||||||     
 uugacu  ucauua  uccguca ag acgacagcucu    c
g      --      cu       c  c           cuuu 

>osa-MIR172d (-56.90)   [osa-miR172d:91-111]

aaac     -   c    a         c           a     -----   u  u  cuaaa  a 
    agucg gug uugc ggugcagca caucaagauuc caucg     agu ca cc     cg g
    ||||| ||| |||| ||||||||| ||||||||||| |||||     ||| || ||     ||  
    ucagc cgc aacg cUACGUCGU GUAGUUCUAAG guagu     uca gu gg     gc a
-uca     u   a    a         A           A     guaua   -  c  uugga  u 

>osa-MIR171i (-55.40)   [osa-miR171i:88-108]

----uaaaa               c          -           auuacag  ac  c  c 
         agagguauuggcgug cucaauccga aggcauggcug       gc  cu ga c
         ||||||||||||||| |||||||||| |||||||||||       ||  || ||  
         ucuCUAUAACUGCGC GAGUUAGGuu uuuguaccgac       cg  ga cu g
cuucguucc               C          c           ----gua  -c  u  a 

>osa-MIR167j (-65.50)   [osa-miR167j:26-46]

---- ug ga   -     - cu a     c         -             -    uu c  u   --uu        ugaa 
    u  u  ugu gugca c  u agcag UGAAGCUGC CAGCAUGAUCUGa ucuu  g ga cuc    uuuuuauc    u
    |  |  ||| ||||| |  | ||||| ||||||||| ||||||||||||| ||||  | || |||    ||||||||     
    a  g  aca cacgu g  a ucguc acuuugacg gucgugcuagacu agaa  c cu ggg    aaagguag    a
uuua gu uc   u     a cu a     u         c             u    -u -  u   uuau        uuga 

>osa-MIR166m (-76.70)   [osa-miR166m:147-167]

cuc     u      ----ug  u      cuc          uu  uu         a   ---  u  u   guccuacaucacauuuuuuuuucuuuguucu 
   ugcuu gguggu      gc gauguu   gguuaagggg  ug  gucugguuc agg   cc cc gcu                               g
   ||||| ||||||      || ||||||   ||||||||||  ||  ||||||||| |||   || || |||                               a
   acgga cuacca      cg uuacga   ccaauuUCCC  AC  CGGACCAGG Ucc   gg gg cgg                               a
--u     -      uaauug  u      ---          UU  UU         C   agu  u  u   uacguaguacguguguguguagguagucuuu 

>osa-MIR166n (-52.30)   [osa-miR166n:64-84]

-uga       cu    a a       c   c         a        c 
    uccaugg  guug g ggaauga guc ggucugaag ucgccguc c
    |||||||  |||| | ||||||| ||| ||||||||| ||||||||  
    agguacu  cagu C CCUUACU CGG CCAGGCUuc gguggcgg c
ccca       --    a C       U   A         -        a 

>osa-MIR164f (-131.10)   [osa-miR164f:24-44]

----  ag au         c   a          C               cua a  uuc    -     cc    cg            cacuc   -     - c  c 
    ug  g  ggcgaggcg gcg ggUGGAGAAG AGGGCACGUGCAuuc   g gc   cguc cagcu  ccgg  ggcuagcuagcu     cgc cgccg c gc g
    ||  |  ||||||||| ||| |||||||||| |||||||||||||||   | ||   |||| |||||  ||||  ||||||||||||     ||| ||||| | ||  
    ac  c  ccgcuccgc cgu ccaccucuuc ucccguguacguagg   c cg   guag gucgg  ggcc  ucggucggucgg     gcg gcggc g cg c
agga  ga gu         a   g          u               --- a  uac    a     cc    --            --cac   c     c c  c 

>mmu-mir-409 (-38.10)   [mmu-miR-409-5p:15-37] [mmu-miR-409-3p:47-68]

u     u       A    AC         -    - AUc 
 gguac cggagag GGUU  CCGAGCAAC UUUG C   u
 ||||| ||||||| ||||  ||||||||| |||| |    
 cuaug gcuuuUC CCAA  GGCUCGUUG AAGc g   g
a     -       C    GU         U    a gag 

>mmu-mir-410 (-35.80)   [mmu-miR-410:50-70]

g    c       g    ug      a  a     - uuu 
 ggua uugagga aggu  ucugug ug guucg c   a
 |||| ||||||| ||||  |||||| || ||||| |   u
 ccau aacuuuU UCCG  AGACAC AU UAAgc g   u
a    -       G    GU      A  A     a uaa 

>mmu-mir-376b (-34.40)   [mmu-miR-376b*:14-35] [mmu-miR-376b:51-71]

u      u           A     U         cgug  u 
 gguauu aaaagGUGGAU UUCCU CUAUGGUUA    cu c
 |||||| ||||||||||| ||||| |||||||||    ||  
 cuauga uuuUUCACCUA AAGGA GAUACUAau    gg c
a      c           C     -         ---a  u 

>mmu-mir-411 (-30.00)   [mmu-miR-411:16-36] [mmu-miR-411*:51-72]

u      ug   a a    A      A A       - uuu 
 gguacu  gag g UAGU GACCGU U GCGUACG c   a
 ||||||  ||| | |||| |||||| | ||||||| |   u
 cuauga  cuc C AUCA CUGGCA A UGUAUgc g   c
a      --   C A    C      C A       a ugu 

>mmu-mir-412 (-33.30)   [mmu-miR-412:52-71]

      g g    a    c      c   aa    -    u 
ggguau g acgg uggu gaccag ugg  agua auug u
|||||| | |||| |||| |||||| |||  |||| ||||  
cccgug c uGCC AUCA CUGGUC ACU  Ucau uaau u
      g -    G    C      C   --    g    c 

>mmu-mir-370 (-42.40)   [mmu-miR-370:48-69]

       g         ca gu   u    u   a  g 
agacgga agaccaggu  c  cuc gcag uac ca c
||||||| |||||||||  |  ||| |||| ||| || u
ucugucu uuUGGUCCA  G  GGG CGUC Gug gu c
       g         AG UG   U    C   a  a 

>gga-mir-29a (-34.70)   [gga-miR-29a:55-75]

a    uu agagg            uuu       c    ucaa 
 cccc  u     augacugauuuc   ugguguu agag    u
 ||||  |     ||||||||||||   ||||||| ||||    a
 gggg  a     uaUUGGCUAAAG   ACCACGA Ucuu    a
a    uu -guga            UUU       -    uuau 

>gga-mir-29b-1 (-32.62)   [gga-miR-29b:51-73]

    -     -          u      gu      uuaac 
ccuc aggaa gcugguuuca auggug  uuagau     u
|||| ||||| |||||||||| ||||||  ||||||     a
ggag uucUU UGACUAAAGU UACCAC  GAUcug     u
    g     G          U      --      uuacu 

>gga-let-7i (-39.60)   [gga-let-7i:6-26]

c    U                 U   --------  u     ugu 
 uggc GAGGUAGUAGUUUGUGC GUu        gg cgggu   g
 |||| ||||||||||||||||| |||        || |||||   a
 aucg uuccgucaucgaacgcg caa        uc gcccg   c
-    -                 u   uagaggug  -     uua 

>gga-mir-135a-2 (-39.10)   [gga-miR-135a:23-45]

a   aaa     ucua                U            u g a 
 gau   uucac    guguuuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    |||||||||||||||| |||||||||||| | | u
 cua   aagug    cauaaaguaccgaagg uagggauguacu u a a
a   -aa     -uua                -            c g a 

>gga-mir-33 (-37.60)   [gga-miR-33:6-25]

     G          UU         --g   u 
cugua UGCAUUGUAG  GCAUUGCau   ugc g
||||| ||||||||||  |||||||||   ||| g
gacau acgugacguc  uguaacgug   aug c
     g          cu         uca   a 

>gga-let-7a-3 (-34.10)   [gga-let-7a:4-25]

   U   GU                ---------u     u 
ggg GAG  AGUAGGUUGUAUAGUU          uaggg u
||| |||  ||||||||||||||||          ||||| a
ucc uuc  ucaucuaacauaucaa          guccc u
   u   ug                uagacugucc     g 

>gga-let-7b (-43.10)   [gga-let-7b:6-27]

    aU                     ucaggguagugauuu 
cagg  GAGGUAGUAGGUUGUGUGGUU               u
||||  |||||||||||||||||||||                
gucc  uuccgucauccaacauaucaa               g
    -c                     uagaggacuaacccc 

>gga-mir-99a (-37.80)   [gga-miR-99a:13-34] [gga-miR-99a*:50-70]

cca         A         UC   U       ugaa 
   auuggcaua ACCCGUAGA  CGA CUUGUGu    a
   ||||||||| |||||||||  ||| |||||||    u
   ugacugugU UGGGUAUCU  GCU GAACacg    g
gua         C         UC   C       ucac 

>gga-let-7c (-33.50)   [gga-let-7c:11-32]

  a      uU   G   U             ua  g ua a 
gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
|| ||||||  ||| ||| |||||||||||||  || |  | c
cg agguuc  uuc auc uccaacaugucaa  uu a  g c
  -      cu   g   u             --  g gg u 

>gga-mir-125b (-37.90)   [gga-miR-125b:17-38]

a  aga   uu     UC  UG   C   A        ----g   u 
 uc   cuu  ccuag  CC  AGA CCU ACUUGUGA     guu u
 ||   |||  |||||  ||  ||| ||| ||||||||     |||  
 ag   gag  ggauc  gg  ucu gga ugaacacu     cga g
-  -gg   gc     ca  gu   c   c        aacaa   u 

>gga-mir-155 (-28.00)   [gga-miR-155:3-24]

u           U    A        -    c 
 gUUAAUGCUAA CGUG UAGGGGuu uuua c
 ||||||||||| |||| |||||||| ||||  
 caauuacgauu guac auccucag aagu u
a           -    -        u    c 

>gga-mir-222-1 (-35.10)   [gga-miR-222:57-80]

-----  u  u  cc     auc             -     auu   ucuu 
     ug ag ug  cauca   gcucaguagucag uguag   cug    u
     || || ||  |||||   ||||||||||||| |||||   |||     
     ac uc ac  guagu   UGGGUCAUCGGUC ACAUC   gac    a
ucuau  -  u  -a     CUC             U     GAc   uaac 

>gga-mir-221 (-43.20)   [gga-miR-221:64-86]

gacug       uugg  cau     ug   u         auuu    -   u 
     uccaggu    gg   gaacc  gca acaauguag    cugu guu g
     |||||||    ||   |||||  ||| |||||||||    |||| ||| u
     agguccg    cC   UUUGG  CGU UGUUACAUC    GAca cga u
----a       ucga  ---     GU   C         ----    a   a 

>gga-mir-92 (-36.70)   [gga-miR-92:48-68]

- uu   ac            c   u       ug gcg 
 c  ucu  acagguugggau agu gcaaugc  u   u
 |  |||  |||||||||||| ||| |||||||  |    
 g  gga  uGUCCGGCCCUG UCA CGUUAUg  g   u
g uu   gu            U   -       gu ucu 

>gga-mir-19b (-38.00)   [gga-miR-19b:54-76]

       cuc              -  -      uc    --u     
cacuguu   ugguuaguuuugca gg uuugca  cagc   guau 
|||||||   |||||||||||||| || ||||||  ||||   ||| g
gugacgg   gucAGUCAAAACGU CC AAACGU  GUcg   caua 
       --u              A  U      --    ucu     

>gga-mir-20a (-42.50)   [gga-miR-20a:19-41]

-------ug      cuu    c   -A                 ----G    g 
         acagcu   guag acU  AAGUGCUUAUAGUGCAG     UAGu u
         ||||||   |||| |||  |||||||||||||||||     ||||  
         ugucga   cguc uga  uucacgaauauuacguc     auca u
acaucaaga      --u    a   aa                 aucua    c 

>gga-mir-19a (-34.10)   [gga-miR-19a:49-71]

g   u  u                 --      ---    gg 
 cag cu cuguuaguuuugcauag  uugcac   uaca  a
 ||| || |||||||||||||||||  ||||||   ||||  a
 guc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
-   c  u                 UA      Uug    aa 

>gga-mir-18a (-27.30)   [gga-miR-18a:14-35]

----gu         a   --   U   UC   U    A   -  aa u 
      gcuuuuugu cUA  AGG GCA  UAG GCAG UAg ug  g a
      ||||||||| |||  ||| |||  ||| |||| ||| ||  | g
      ugaagaaua ggu  ucc cgu  auc cguc auc ac  u a
cuguau         c   cu   u   ga   c    -   u  ga u 

>gga-mir-17 (-33.00)   [gga-miR-17-5p:14-37] [gga-miR-17-3p:52-71]

     a       -CA        A  G     GUA  gaua 
gucag guaaugu   AAGUGCUU CA UGCAG   GU    u
||||| |||||||   |||||||| || |||||   ||     
caguu uauuacg   UUCACGGA GU ACGUC   ca    a
     g       aUG        A  G     Auc  agau 

>gga-mir-16-1 (-30.99)   [gga-miR-16:14-35]

gucu   a    c         -  A        U uuaaaac 
    guc uacu UAGCAGCAC GU AAUAUUGG G       u
    ||| |||| ||||||||| || |||||||| |        
    cgg auga gucgucgug ca uuaugacc c       g
---u   a    a         u  a        u uauaaau 

>gga-mir-15a (-30.64)   [gga-miR-15a:14-34]

     gcauaac UA        UA         gggu   g 
ccuug       g  GCAGCACA  AUGGUUUGU    uuu a
|||||       |  ||||||||  |||||||||    |||  
ggaac       c  cgucgugu  uaccggacg    gga a
     auaaaaa uc        ua         ---u   a 

>gga-mir-26a (-37.50)   [gga-miR-26a:10-30]

   a  ug  U         C          -   ucc 
guc cc  gU CAAGUAAUC AGGAUAGGCu gua   a
||| ||  || ||||||||| |||||||||| |||    
cgg gg  ca guucauugg ucuuauccgg cgu   u
   a  gu  c         u          u   ccu 

>gga-mir-153 (-40.80)   [gga-miR-153:53-72]

a      g      -             gu       -a  aa 
 gcgguu ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||| |||||| |||||||||||||  |||||||  ||  a
 ugucaa gguuac AGUGAAAACACUG  ACGUUga  cg  u
g      a      u             AU       cc  ag 

>gga-mir-148a (-25.60)   [gga-miR-148a:44-65]

  ag            --a    ca    -   gu 
ga  caaaguucugug   cacu  gacu cug  u
||  ||||||||||||   ||||  |||| |||  a
cu  GUUUCAAGACAU   GUGA  CUga gau  c
  cU            CAC    --    c   ag 

>gga-mir-196-2 (-32.80)   [gga-miR-196:16-36]

---------     cucu      U          A      U    cucc 
         aacug    gugguu AGGUAGUUUC UGUUGU GGgg    a
         |||||    |||||| |||||||||| |||||| ||||    c
         uugac    cauuaa uccgucaaag acgaca cucu    c
cuacuauag     --uu      u          c      u    cuuu 

>gga-mir-138-1 (-52.30)   [gga-miR-138:22-38]

cccugccg     c    a  AG             UCa      - a  a 
        ggugc gugc gc  CUGGUGUUGUGAA   ggccgu c cc g
        ||||| |||| ||  |||||||||||||   |||||| | ||  
        ccacg cacg ug  gaccacaacacuu   ucggca g gg u
-----aca     u    g  -g             -ca      a a  c 

>gga-mir-128-2 (-39.10)   [gga-miR-128:52-72]

uguc    u             uua      aa    g gag 
    cagc ggaaggggggccg   cacugu  gaga u   u
    |||| |||||||||||||   ||||||  |||| |    
    gucg ccuUUUCUCUGGC   GUGACA  CUcu g   a
cugu    u             CAA      --    g acg 

>gga-mir-187 (-43.60)   [gga-miR-187:56-75]

aaacuau    aga    c    a                a c  u 
       ugug   ccuc ggcu caacacaggacauggg g uu u
       ||||   |||| |||| |||||||||||||||| | ||  
       acac   ggag CCGA GUUGUGUUCUGUGCUc c ag c
-------    -gg    a    C                c a  u 

>gga-mir-32 (-30.20)   [gga-miR-32:6-26]

-    a          U           -  uu  c 
 ggag UAUUGCACAU ACUAAGUUGCa ug  gu a
 |||| |||||||||| ||||||||||| ||  ||  
 uuuc auagcgugug ugauuuaacgu ac  cg c
c    -          -           g  uc  g 

>gga-mir-133a-1 (-37.70)   [gga-miR-133a:53-74]

-      uuu    a       aa  u  a        accuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

>gga-mir-1a-2 (-33.24)   [gga-miR-1a:53-73]

a      c    c                ac     ugaaca 
 ccugcu agag acauacuucuuuaugu  ccaua      u
 |||||| |||| ||||||||||||||||  |||||       
 ggacgg uuuu UGUAUGAAGAAAUGUA  GGUau      a
c      u    A                -A     cguaac 

>gga-mir-124a (-35.70)   [gga-miR-124a:51-72]

------------   c     c   cc        a   ga        uaau 
            agg ucugc ucu  guguucac gcg  ccuugauu    g
            ||| ||||| |||  |||||||| |||  ||||||||    u
            ucc aggcg aga  CGUAAGUG CGC  GGAAUUaa    c
uuacggcggacc   u     -   AC        G   AC        caua 

>gga-mir-30d (-27.60)   [gga-miR-30d:6-27]

guu  U         CCC           guag 
   gc GUAAACAUC   GACUGGAAGcu    c
   || |||||||||   |||||||||||    a
   cg cguuuguag   cugacuuucga    g
---  u         --a           guuc 

>gga-mir-30b (-31.70)   [gga-miR-30b:16-37]

-    cuu      ccU          U  -A       aua  a 
 cuaa   uuaguu   GUAAACAUCC AC  CUCAGCU   ac a
 ||||   ||||||   |||||||||| ||  |||||||   || g
 gguu   agucaa   cauuuguagg ug  gggucgg   ug u
a    --c      cuu          -  gg       -ga  g 

>gga-mir-216 (-40.20)   [gga-miR-216:19-39]

--------------gaug      aa     u         CUG  A        c   u 
                  gcugug  uuggc UAAUCUCAG   GC ACUGUGag agu a
                  ||||||  ||||| |||||||||   || |||||||| ||| a
                  cgacac  aaucg auuaggguc   ug ugacacuc uua u
guaaucucguuucuuuaa      -a     u         -ua  g        -   a 

>gga-mir-217 (-31.60)   [gga-miR-217:32-55]

aaagucacugcaga   cuu     c c  a  C     C          U -   aau 
              guu   gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
              |||   ||||| | || || ||||| |||||||||| | |||    
              caa   cuacg c uc gu acgua uccuugacua c cug   a
-----------gaa   -au     a u  c  u     a          c a   acu 

>gga-mir-194 (-28.50)   [gga-miR-194:14-35]

uggug  c   uaU         A      G    cuac 
     cu uca   GUAACAGCA CUCCAU UGGA    a
     || |||   ||||||||| |||||| ||||    c
     ga agu   cauugucgu gaggug accu    u
-----  u   uuu         a      -    ucag 

>gga-mir-215 (-33.20)   [gga-miR-215:26-46]

uc    a   cu    uc     a A  A     -   U      ACu  uuuc 
  agua gaa  ggug  cagga a UG CCUAU GAA UGACAG   gc    a
  |||| |||  ||||  ||||| | || ||||| ||| ||||||   ||    a
  ucau cuu  ucac  gucuu u ac ggaua cuu acuguc   cg    a
-u    c   -u    gu     a a  c     u   u      ---  ugua 

>gga-mir-30a (-36.00)   [gga-miR-30a-5p:6-27] [gga-miR-30a-3p:48-69]

   a            UC           g gaagc 
gcg cUGUAAACAUCC  GACUGGAAGcu u     a
||| ||||||||||||  ||||||||||| |      
cgu GACGUUUGUAGG  CUGACUUUCgg g     g
   C            --           g uagac 

>gga-mir-30c-2 (-28.20)   [gga-miR-30c:7-30]

   uacU       U   ACA         ----gu g 
agg    GUAAACA CCU   CUCUCAGCU      g a
|||    ||||||| |||   |||||||||      |  
ucc    cauuugu gga   gagggucga      c a
   cucu       c   --a         aagaau a 

>gga-mir-133b (-37.20)   [gga-miR-133b:49-69]

------- u     c        ca  c  a        cgucu  u 
       c cugcu uggcuggu  aa gg accaagcc     uc u
       | ||||| ||||||||  || || ||||||||     ||  
       g gacga AUCGACCA  UU CC UGGUUugg     ag c
aaaaguu u     u        AC  C  C        -----  g 

>gga-mir-206 (-30.10)   [gga-miR-206:45-66]

------     g                cc     -   au 
      gagau acaugcuucuuuauau  ccaua ugg  u
      ||||| ||||||||||||||||  ||||| |||   
      cuuuG UGUGUGAAGGAAUGUA  GGUau guc  a
gaggga     G                -A     c   gg 

>gga-mir-223 (-43.20)   [gga-miR-223:59-79]

----cu   -    ag    gcgu              gaguuu       a u 
      gca gugc  cacu    guauuugacaagcu      gacacuc g c
      ||| ||||  ||||    ||||||||||||||      ||||||| | u
      cgu cacg  guga    CAUAAACUGUUUGA      CUGUgag c g
acgagu   u    ga    aCCC              ------       a g 

>gga-mir-18b (-30.10)   [gga-miR-18b:15-36]

cgugguc         --   U    C   U     UA  --g     
       cuuguguUA  AGG GCAU UAG GCAGU  gu   acgu 
       |||||||||  ||| |||| ||| |||||  ||   ||| a
       gaacacggu  ucc cgua auc cguca  ua   ugcg 
-------         cu   u    a   c     uc  aga     

>gga-mir-106 (-32.10)   [gga-miR-106:14-35]

  u  a  ug   -AA         C G     G   -a    
cc ug gu  ugc   AAGUGCUUA A UGCAG UAg  gcu 
|| || ||  |||   ||||||||| | ||||| |||  || c
gg gc ca  acg   uucacgaau u acguc auc  cga 
  u  -  gu   guc         a g     -   ca    

>gga-mir-302a (-23.60)   [gga-miR-302a:43-64]

   ca   u         u ug   g    gu 
cca  acu aaaugugga g  cuu cuuu  u
|||  ||| ||||||||| |  ||| ||||  c
ggu  UGA UUUGUACCU C  GAA gaaa  u
   AG   U         U GU   a    ag 

>gga-mir-218-1 (-38.05)   [gga-miR-218:24-44]

---u  uaau  a   a   u      U         CU        gguugugag 
    ga    gu gcg gau uucugU GUGCUUGAU  AACCAUGU         g
    ||    || ||| ||| |||||| |||||||||  ||||||||          
    cu    cg cgc cug aaggua cacgaacug  uugguaca         u
acau  --uu  a   a   c      c         uc        aaaugagua 

>gga-mir-103-2 (-35.90)   [gga-miR-103:51-73]

u      g      --   u  u           c   uu   u 
 cucugu cuuuca  gcu cu uacagugcugc uug  gcg u
 |||||| ||||||  ||| || ||||||||||| |||  |||  
 gagaca gaaAGU  CGG GA AUGUUACGACG Aac  ugu c
-      a      AU   -  C           -   --   a 

>gga-mir-203 (-38.80)   [gga-miR-203:56-77]

-----   -a     c     gc         u    g    a     cuc 
     cuc  gccuc uuggu  agugguucu aaca uuca caguu   u
     |||  ||||| |||||  ||||||||| |||| |||| |||||   a
     ggg  cggag gacca  UCACCAGGA UUGU AAGU Guuaa   u
gcuac   cc     c     GU         U    A    -     uac 

>gga-mir-107 (-29.60)   [gga-miR-107:50-72]

c   u      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 agg acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   u      CUA    -  C           -   -   a 

>gga-mir-10b (-41.40)   [gga-miR-10b:27-48]

ca   c   a  a     u        A    G     C          uga   u 
  gaa guu uu cguug cuauauaU CCCU UAGAA CGAAUUUGUg   uau c
  ||| ||| || ||||| |||||||| |||| ||||| ||||||||||   |||  
  cuu caa aa guagc gguauaua gggg aucuu gcuuagacac   aua a
-a   -   a  c     u        a    -     a          -ug   u 

>gga-mir-128-1 (-36.00)   [gga-miR-128:50-70]

u    u      uuc       uaa      cu       u 
 gagc guugaa   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       u 

>gga-mir-181a-1 (-32.00)   [gga-miR-181a:20-42] [gga-miR-181a*:60-81]

-----ugua      -   uc  u A   U      CU       A    gga  u 
         gugguu gcu  ag g ACA UCAACG  GUCGGUG GUuu   au u
         |||||| |||  || | ||| ||||||  ||||||| ||||   ||  
         uaccaa cga  uc C UGU AGUUGC  CAGCUAC CAaa   ug a
uccuccucc      u   cc  C A   U      --       -    -ag  a 

>gga-mir-181b-1 (-34.20)   [gga-miR-181b:15-36]

--aaaa       aucAA         CUG           aa  a 
      ggucaca     CAUUCAUUG   UCGGUGGGuuu  cu u
      |||||||     |||||||||   |||||||||||  ||  
      ccggugu     guaaguaac   agucacucgaa  gg g
uacacc       -caac         --a           ca  u 

>gga-mir-199-2 (-42.20)   [gga-miR-199:29-51] [gga-miR-199*:67-86]

gaagcguccggagauccu    c   gcC       U        C   ---U   ga 
                  gcuc guc   CCAGUGU CAGACUAC UGU    Cag  c
                  |||| |||   ||||||| |||||||| |||    |||  a
                  cggg cag   GGUUACA GUCUGAUG ACA    guc  a
-------acgaaagggaa    u   auu       C        -   Uguu   gu 

>gga-mir-137 (-44.30)   [gga-miR-137:55-76]

---u   --           ug   g           ug a     -  g 
    cug  acucucuucgg  acg guauucuuggg  g uaaua cg a
    |||  |||||||||||  ||| |||||||||||  | ||||| || u
    ggc  ugagaggagcu  UGC CAUAAGAAUUC  U AUugu gc u
cggc   ca           GA   G           GU -     u  a 

>gga-mir-16-2 (-32.80)   [gga-miR-16:17-38]

ccuac    uc   ccU         UA        U  ag   aau 
     uugu  cgc   AGCAGCACG  AAUAUUGG Gu  uaa   a
     ||||  |||   |||||||||  |||||||| ||  |||    
     gacg  gcg   ucgucgugu  uuauaacc ca  auu   a
-uaga    gu   aau         ua        c  -a   cca 

>gga-mir-15b (-35.00)   [gga-miR-15b:19-40]

ugagg       gua  cU       C  C           g  gu 
     ccuuaaa   cu  AGCAGCA AU AUGGUUUGCAu cu  a
     |||||||   ||  ||||||| || ||||||||||| ||  g
     ggaauuu   ga  ucgucgu ua uacuaagcgua ga  u
---aa       aaa  uu       u  u           -  ag 

>gga-mir-190 (-40.20)   [gga-miR-190:15-36]

u       u    - UG               UA     uuau 
 gcaggac cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||||| |||| |  |||||||||||||||  |||||     
 cguccug gaca c  uauacaaacuauaua  ucaac    u
c       u    u cu               --     cuaa 

>gga-mir-204-2 (-41.40)   [gga-miR-204:27-48]

cuacu     ugugu   cug     U         CA    A     g aga 
     gagac     gac   ugggc UCCCUUUGU  UCCU UGCCU g   u
     |||||     |||   ||||| |||||||||  |||| ||||| |   c
     cucug     cug   acucg agggaaacg  aggg acgga u   a
--cuu     -----   ucg     u         ac    -     g gac 

>gga-mir-7-2 (-49.10)   [gga-miR-7:20-41]

--  ac     cg       cU  A     A       U     u  au  cu 
  gg  ggccg  gugcccu  GG AGACU GUGAUUU GUUGu gu  gg  c
  ||  |||||  |||||||  || ||||| ||||||| ||||| ||  ||   
  cc  ccggc  cgcggga  cc ucuga cacugaa caaca ca  cc  a
cg  --     -a       uu  g     -       -     c  --  cu 

>gga-mir-184 (-27.60)   [gga-miR-184:53-74]

ccgcucucacc         c      a c     -u  uuc 
           cccuuauca uuuucc g ccagc  uc   g
           ||||||||| |||||| | |||||  ||    
           GGGAAUAGU AAGAGG C GGUug  ag   c
----------U         C      - A     uc  ucu 

>gga-mir-138-2 (-30.50)   [gga-miR-138:9-25]

- u   u  AG       U     UCa     --------ac   a 
 g ugc gc  CUGGUGU GUGAA   ggccg          ggc a
 | ||| ||  ||||||| |||||   |||||          |||  
 c acg ug  gaccaca cacuu   ucggc          ucg g
a u   u  -g       u     -ua     cuaucauccu   c 

>gga-mir-140 (-50.60)   [gga-miR-140:22-42] [gga-miR-140*:62-82]

ugcgucu     -       -  A             A       uu   uc 
       cuccg uguccug cc GUGGUUUUACCCU UGGUAGg  acg  a
       ||||| ||||||| || ||||||||||||| |||||||  |||   
       ggggc guagggC GG CACCAAGAUGGGA ACCaucu  ugu  u
------c     c       A  -             C       --   cg 

>gga-let-7g (-38.80)   [gga-let-7g:5-25]

a   U        A            ugagg    -a  a    a 
 ggc GAGGUAGU GUUUGUACAGUu     gucu  ug uacc c
 ||| |||||||| ||||||||||||     ||||  || ||||  
 ccg uuccguca cggacaugucaa     uaga  ac augg c
-   -        c            -----    gg  -    c 

>gga-mir-135a-1 (-43.24)   [gga-miR-135a:15-37]

-      c    c           UU            uuauac 
 gccuca uguc ugUAUGGCUUU  AUUCCUAUGUGA      a
 |||||| |||| |||||||||||  ||||||||||||       
 uggggu gcgg acgugccgaag  uagggauauacu      u
c      c    a           -u            ucgccc 

>gga-let-7d (-44.00)   [gga-let-7d:16-36]

-auu    u       A       UG     C      uuagggcagggauu 
    gggc ccuagga GAGGUAG  GGUUG AUAGUu              u
    |||| ||||||| |||||||  ||||| ||||||               
    uucg ggauucu uuccguc  ccaac uaucaa              u
uuau    -       -       gu     a      uggaggaacacucg 

>gga-let-7f (-43.30)   [gga-let-7f:7-28]

    a UG                      ---------       u 
ucag g  AGGUAGUAGAUUGUAUAGUUgu         aggguag u
|||| |  ||||||||||||||||||||||         ||||||| a
aguc c  uccguuaucuaacauaucaaua         ucccauu u
    - cu                      gaggacuug       u 

>gga-let-7a-1 (-35.50)   [gga-let-7a:13-34]

ugca  g     U   GU                uuagg   aua    c 
    cu uggga GAG  AGUAGGUUGUAUAGUU     guc   cccg a
    || ||||| |||  ||||||||||||||||     |||   ||||  
    ga auccu uuc  ucaucuaacauaucaa     uag   gggu a
----  a     -   ug                -----   --a    c 

>gga-mir-146a (-39.40)   [gga-miR-146a:16-37]

--------gu      uc    uU         A           guaau   auc 
          guaucc  agcu  GAGAACUGA UUCCAUGGGUU     uga   c
          ||||||  ||||  ||||||||| |||||||||||     |||    
          uauagg  ucga  uucuugacu gggguacccag     acu   u
cuucugucuu      -u    -c         c           -----   guu 

>gga-mir-103-1 (-34.90)   [gga-miR-103:48-70]

ugc       --    u  u           c   u g a 
   ugccuuc  ggcu cu uacagugcugc uug u c u
   |||||||  |||| || ||||||||||| ||| | |  
   acggaAG  UCGG GA AUGUUACGACG Aac a g a
guc       UA    -  C           -   u g u 

>gga-mir-218-2 (-37.40)   [gga-miR-218:12-32]

----------- g        uUU         CU        ------g   ga 
           g gguuuucc   GUGCUUGAU  AACCAUGU       gua  a
           | ||||||||   |||||||||  ||||||||       |||   
           c ucggaagg   cacgaacug  uugguaca       cau  c
cgucccucaua g        uac         uc        aguuaaa   aa 

>gga-mir-205b (-39.00)   [gga-miR-205b:26-47]

auacacuacuagg    uc      CC       C   C        uca  gc 
             gccu  cugaug  CUUCAUU CAC GGAAUCUG   gu  a
             ||||  ||||||  ||||||| ||| ||||||||   ||   
             cgga  gacuac  gaaguaa gug cuuuagac   ca  g
---------ucga    ga      cc       a   a        ---  aa 

>gga-mir-130b (-25.90)   [gga-miR-130b:52-73]

gggcgggcugccc       cc         a  -  ca g 
             cucuuuc  uguugcacu cu gu  c g
             |||||||  ||||||||| || ||  |  
             GGGAAAG  AUAACGUGA ga cg  g u
------ugacUGC       UA         C  g  ac c 

>gga-mir-301 (-31.64)   [gga-miR-301:57-81]

uggcu     u    cug   c         ---      a  gucugc 
     gcugg aucg   gcu ugacaaugu   ugcacu cu      a
     ||||| ||||   ||| |||||||||   |||||| ||       
     ugacc uggu   CGA ACUGUUAUA   ACGUGA ga      c
----c     u    uUA   A         AUA      C  aauaaa 

>gga-mir-130a (-34.20)   [gga-miR-130a:52-73]

ug      u    a        uc         a  g -  a 
  cuguug ccag gcccuuuu  uguuguacu cu g ca u
  |||||| |||| ||||||||  ||||||||| || | ||  
  gacggu gguU CGGGAAAA  AUAACGUGA ga u gu u
--      c    A        UU         C  g a  a 

>gga-mir-181b-2 (-31.70)   [gga-miR-181b:16-37]

cuaa   -     aucAA         CU           uucau 
    ugg cugca     CAUUCAUUG  GUCGGUGGGuu     u
    ||| |||||     |||||||||  |||||||||||      
    acc ggcgu     guaaguaac  uagucacucaa     g
----   a     caaac         --           cuauc 

>gga-mir-181a-2 (-30.10)   [gga-miR-181a:24-46]

gccaucuuuggaua       u A   U      CU       A    gagaa 
              gcuucag g ACA UCAACG  GUCGGUG GUuu     c
              ||||||| | ||| ||||||  ||||||| ||||      
              uggaguu c ugu aguugc  cagcuac caaa     u
--------------       c a   c      --       -    aagaa 

>gga-mir-126 (-41.30)   [gga-miR-126*:14-34] [gga-miR-126:51-73]

-     ug     c           U       C cug   c 
 gcugg  acggc CAUUAUUACUU UGGUACG G   uga a
 |||||  ||||| ||||||||||| ||||||| |   |||  
 cgacu  uguCG GUAAUAAUGAG GCCAUGC c   acu c
a     gg     C           U       U -aa   u 

>gga-mir-199-1 (-35.20)   [gga-miR-199:15-37] [gga-miR-199*:53-72]

------c    - u c     C       U        C   U   gacu 
       ucca c c gucug CCAGUGU CAGACUAC UGU Cag    a
       |||| | | ||||| ||||||| |||||||| ||| |||     
       gggu g g cggau GGUUACA GUCUGAUG ACA guu    c
ccacaua    c u u     u       C        -   U   agag 

>gga-mir-219 (-39.70)   [gga-miR-219:10-30]

--       c U   U     A           -----     - u 
  cucugcu c GAU GUCCA ACGCAAUUCUu     gugcg c g
  ||||||| | ||| ||||| |||||||||||     ||||| |  
  gagacga g cua caggu uguguuaagaa     caugc g g
ua       u u   -     c           ccaag     c a 

>gga-mir-1a-1 (-28.30)   [gga-miR-1a:46-66]

u    g                gc     u  acc 
 gaga acauacuucuuuauau  ccaua ga   u
 |||| ||||||||||||||||  ||||| ||   g
 cuuu UGUAUGAAGAAAUGUA  GGUau cu   g
a    A                -A     -  aac 

>gga-mir-133a-2 (-35.00)   [gga-miR-133a:61-82]

gugaggcca     uuu    a       aa  u  a        aacug 
         aaugc   gcua agcuggu  aa gg accaaauc     u
         |||||   |||| |||||||  || || ||||||||      
         uuacg   cgaU UCGACCA  UU CC UGGUUuag     u
------uag     ugu    G       AC  C  C        guaac 

>gga-mir-200a (-37.34)   [gga-miR-200a:52-73]

   - -    g        -             c    uuucuu 
ggu c cucu ugggcauc uuacuagacagug ugga      g
||| | |||| |||||||| ||||||||||||| ||||       
cca g ggga auuUGUAG AAUGGUCUGUCAC AUcu      g
   a u    a        C             A    uaucua 

>gga-mir-200b (-31.62)   [gga-miR-200b:46-68]

-----------     uac    -    ug     c      uguuc 
           gccau   cauc uuac  ggcag auugga     u
           |||||   |||| ||||  ||||| ||||||     c
           uggug   GUAG AAUG  CCGUC UAAUcu     u
cacgugcuuug     uUA    U    GU     A      uuuug 

>gga-mir-34a (-50.60)   [gga-miR-34a:21-43]

--g     --    -  ug     uU        -   A          --gug   a 
   ccagc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUU     agc a
   |||||  |||| ||  |||||  |||||||| ||| ||||||||||     |||  
   gguug  acac uc  gaaga  ccgucaua gaa cgacuaacga     uug u
ccg     uu    a  gu     uc        u   -          aggaa   a 

>gga-mir-124b (-39.40)   [gga-miR-124b:50-71]

----------a       cg   u           aga        uaau 
           gccccag  uuu guguucacugc   ccuugauu    g
           |||||||  ||| |||||||||||   ||||||||    u
           cgggguu  aaA CGUAAGUGACG   GGAAUUag    c
gucggguccga       ug   C           CAC        caca 

>gga-mir-1b (-24.20)   [gga-miR-1b:42-62]

---           c    gc     ugga   g 
   acauacuucuu auau  ccaua    guc g
   ||||||||||| ||||  |||||    |||  
   UGUAUGAAGAA UGUA  GGUau    cgg c
cuA           U    -A     --ug   c 

>gga-mir-133c (-39.70)   [gga-miR-133c:49-70]

u    uc   g       aaa    -a        aacu 
 gccu  cug ggcuggu   aagg  accagauc    a
 ||||  ||| |||||||   ||||  ||||||||    c
 cggg  gaC UCGACCA   UUCC  UGGUUuag    a
a    gu   G       -AC    CC        guca 

>gga-mir-30e (-53.00)   [gga-miR-30e:19-37]

c g       auc  u             UU           g gag  g 
 g ggcaguc   gc gcUGUAAACAUCC  GACUGGaagcu u   gu u
 | |||||||   || |||||||||||||  ||||||||||| |   ||  
 c ucgucgg   cg cgacauuuguagg  cugacuuucgg g   cg c
a g       --a  u             --           g --g  a 

>gga-mir-30c-1 (-38.60)   [gga-miR-30c:17-40]

a     cu    cac         -    ACA        Ug gaa 
 ccaug  guag   gUGUAAACA UCCU   CUCUCAGC  u   c
 |||||  ||||   ||||||||| ||||   ||||||||  |   u
 gguac  cguc   cgcauuugu agga   gagggucg  g   c
a     --    uuc         u    ---        gu gag 

>gga-mir-100 (-24.90)   [gga-miR-100:13-34]

  u -uu c    A   CG     C   A      guca 
cc g   g caca ACC  UAGAU CGA CUUGUG    u
|| |   | |||| |||  ||||| ||| ||||||    a
gg c   c gugu ugg  aucua guu gaacac    u
  u ugu u    a   au     u   c      accu 

>gga-let-7a-2 (-25.20)   [gga-let-7a:5-26]

   uU   G   U             uagaa ua a 
agg  GAG UAG AGGUUGUAUAGUU     u  c c
|||  ||| ||| |||||||||||||     |  | c
ucc  uuc auc uccaacaugucaa     a  g a
   -u   g   c             --uag gg a 

>gga-mir-34b (-32.40)   [gga-miR-34b:13-35]

      g    -gCA       UAG    C       accca 
gugcuu guuu    GGCAGUG   UUAG UGAUUGu     g
|||||| ||||    |||||||   |||| |||||||      
cacgga caaa    ccgucac   aauc acuaaca     c
      a    acua       uua    -       ccccg 

>gga-mir-34c (-29.40)   [gga-miR-34c:13-35]

agc  gg     A   A    A     C      --  a 
   cu  uuacc GGC GUGU GUUAG UGAUUG  Cc c
   ||  ||||| ||| |||| ||||| ||||||  ||  
   ga  aaugg ccg caca caauc acuaac  gg c
---  aa     a   a    c     -      ca  a 

>gga-let-7j (-36.00)   [gga-let-7j:2-23]

---- UG         GU         --------u       g    
    g  AGGUAGUAG  UGUAUAGUU         gguggga gga 
    |  |||||||||  |||||||||         ||||||| || u
    c  uccguuauc  acauaucaa         uuacccu ucu 
aauu cu         ug         uaguggacu       g    

>gga-let-7k (-27.50)   [gga-let-7k:4-25]

--------  cU   GU         A      -  ------    uc 
        gg  GAG  AGUAGAUUG AUAGUU gu      ggag  c
        ||  |||  ||||||||| |||||| ||      ||||  u
        cc  uuc  ucaucuaac uaucaa cg      ccuc  a
agaggaau  -u   ug         a      u  aguuuc    cu 

>gga-mir-135a-3 (-47.50)   [gga-miR-135a:16-38]

-----      g  --                 AU          -   cu 
     cccucu cu  guggucUAUGGCUUUUU  UCCUAUGUGA uug  u
     |||||| ||  |||||||||||||||||  |||||||||| |||  u
     gggagg ga  caucggguaccgaaaag  gggauguacu aau  u
ccuca      g  cu                 -c          c   cc 

>gga-mir-29c (-38.10)   [gga-miR-29c:55-74]

-         -  ggc           ucu       ---     uc 
 ucucuuaca ca   ugaccgauuuc   ugguguu   cagag  u
 ||||||||| ||   |||||||||||   |||||||   |||||  c
 gggggaugu gu   auUGGCUAAAG   ACCACGA   gucuu  a
a         a  ---           UUU       Ucu     ug 

>gga-mir-29b-2 (-31.02)   [gga-miR-29b:51-73]

cc       -          c      g  u    uuucc 
  ucuggaa gcugguuuca auggug cu agau     c
  ||||||| |||||||||| |||||| || ||||     a
  ggaucUU UGACUAAAGU UACCAC GA Ucua     c
ga       G          U      -  -    uguuu 

>gga-mir-205a (-42.22)   [gga-miR-205a:22-43]

ga  -a      ggu   g    C           C        ucucg 
  ca  uccaug   ucu uugU CUUCAUUCCAC GGAGUCUG     u
  ||  ||||||   ||| |||| ||||||||||| ||||||||     a
  gu  agguac   aga aaca gaagugaggug cuuuagac     c
-a  ag      ---   g    c           a        caauc 

>gga-mir-196-1 (-33.30)   [gga-miR-196:24-44]

ugaacuag     cucu                C     G   Ggc    a 
        aacug    gugaauUAGGUAGUUU AUGUU UUG   uuua a
        |||||    |||||||||||||||| ||||| |||   |||| u
        uugac    cauuuaguccaucaaa uacaa aac   aaau u
-------a     --cu                c     g   -ac    u 

>gga-mir-7-3 (-35.50)   [gga-miR-7:19-40]

cugu      gcu        A  A   G      U        gauu 
    ggucug   cugugUGG AG CUA UGAUUU GUUGuuau    u
    ||||||   |||||||| || ||| |||||| ||||||||    a
    cuagac   gacauacc uc gau acuaaa caacagug    u
-cuu      -ac        g  c   -      -        gaaa 

>gga-mir-101 (-35.40)   [gga-miR-101:48-69]

      c                    cg     guaua 
acuauc uuuuucgguuaucaugguac  gugcu     c
|||||| ||||||||||||||||||||  |||||      
uggugg aagAAGUCAAUAGUGUCAUG  CAUGg     g
      u                    -A     aaagu 

>gga-mir-204-1 (-39.76)   [gga-miR-204:33-54]

gucaacagugucuguucau     ccg     U          A    A     gaaaau 
                   gugac   uggac UCCCUUUGUC UCCU UGCCU      a
                   |||||   ||||| |||||||||| |||| |||||      u
                   uacug   acuug agggaaacgg aggg gcggg      a
------------------c     uca     c          a    -     ggaagu 

>gga-mir-7-1 (-40.30)   [gga-miR-7:23-44]

---    u  -      a  u        A     A       U      --     a 
   ugga gu uggucu gu cugugUGG AGACU GUGAUUU GUUGuu  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg acuaga ca gguauacc ucuga cacuaaa caacag  aaauu a
gac    c  u      -  c        g     -       -      uu     a 

>gga-mir-23b (-39.90)   [gga-miR-23b:52-72]

u  ug       u   --          -  a      gug   u 
 gu  uggcugu ugg  guuccuggca ug ugauuu   agu a
 ||  ||||||| |||  |||||||||| || ||||||   |||  
 ca  accgaua aCC  UAGGGACCGU AC ACUAaa   uua a
c  gu       c   AU          U  -      --a   g 

>gga-mir-27b (-50.30)   [gga-miR-27b:61-81]

-    -    ggug                  auug        u  uug 
 accu cucu    aggugcagagcuuagcug    gugaacag ga   u
 |||| ||||    ||||||||||||||||||    |||||||| ||   u
 ugga gaga    uccaCGUCUUGAAUCGGU    CACUUguu cu   u
g    a    --ag                  --GA        u  ccc 

>gga-mir-24 (-27.60)   [gga-miR-24:44-65]

    g  g   a         ua     uc  au 
cucc gu ccu cugagcuga  ucagu  ug  u
|||| || ||| |||||||||  |||||  ||   
gagG CA GGA GACUUGACU  GGUca  ac  u
    A  A   C         -C     -u  au 

>gga-mir-31 (-41.30)   [gga-miR-31:25-46]

uucuuucaug    g u      gA     G             -U   aac 
          caga c ggaggg  GGCAA AUGUUGGCAUAGC  Guu   c
          |||| | ||||||  ||||| |||||||||||||  |||    
          gucu g ccuuuc  cuguu uacaaccguaucg  caa   u
----------    - u      ua     a             uc   aaa 

>gga-mir-122-1 (-37.00)   [gga-miR-122:9-31]

----   -      GG       C           Ugucc 
    cag agcugU  AGUGUGA AAUGGUGUUUG     a
    ||| ||||||  ||||||| |||||||||||      
    guc ucgaua  ucacacu uuaccgcaaac     a
gaug   a      aa       a           uaucu 

>gga-mir-183 (-34.70)   [gga-miR-183:15-37]

-----------a   c    c   g      --AC     GA        --   aa 
            cuc uguu ugu UAUGGC    UGGUA  AUUCACUG  ugc  c
            ||| |||| ||| ||||||    |||||  ||||||||  |||   
            gag acga aca auaccg    accau  uaagugac  gcg  c
agcgcccagaaa   -    a   a      ggau     --        ug   cc 

>gga-mir-7b (-42.30)   [gga-miR-7b:23-44]

------u  a   u     a  u        A     A      UU       --     a 
       gg cau ggucu gu cugugUGG AGACU GUGAUU  UGUUguu  uuuag u
       || ||| ||||| || |||||||| ||||| ||||||  |||||||  |||||  
       cc gua ucaga ca gguauacc ucuga cacuaa  acaacag  aaauc a
gacaucu  -   -     -  c        a     -      --       uu     a 

>gga-mir-122-2 (-37.00)   [gga-miR-122:9-31]

----   -      GG       C           Ugucc 
    cag agcuaU  AGUGUGA AAUGGUGUUUG     a
    ||| ||||||  ||||||| |||||||||||      
    guc ucgaua  ucacacu uuaccgcaaac     a
gaug   a      aa       a           uaucu 

>gga-mir-142 (-44.70)   [gga-miR-142-5p:14-35] [gga-miR-142-3p:53-74]

g        g   C           A         u aa a    
 acagugca uca CCAUAAAGUAG AAGCACUAC a  c gca 
 |||||||| ||| ||||||||||| ||||||||| |  | || c
 ugucaugu agu GGUAUUUCAUC UUUGUGAUG U  g cgu 
g        g   a           C         - gg a    

>gga-mir-196-3 (-40.10)   [gga-miR-196:24-44]

--------uuucaugc       cu      U          A          a   g 
                agcugau  gugguu AGGUAGUUUC UGUUGUUGGg uug c
                |||||||  |||||| |||||||||| |||||||||| ||| u
                uugacug  cauuaa uccgucaaag acaacggcuc gau u
cgggaacuacuucuga       --      u          a          -   u 

>gga-mir-9-2 (-40.10)   [gga-miR-9:16-38]

g    c     g   UC               G      ug u 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aau  aagccaauagaucga auacuu  g u
a    -     a   ga               a      cu g 

>dps-bantam (-25.50)   [dps-bantam:52-74]

au     uac    c          uu      g   -  uu 
  uugac   gaaa cgguuuucga  ugguuu acu gu  u
  |||||   |||| ||||||||||  |||||| ||| ||  u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga ca  u
--     ---    A          UU      G   a  ua 

>dps-let-7 (-29.62)   [dps-let-7:11-31]

  u      uU   G     G           guacu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa     u
|| ||||||  ||| ||||| |||||||||||     c
ag ucguuu  uuc aucgu uaacauaucau     a
  u      cu   g     g           gcuag 

>dps-mir-1 (-34.80)   [dps-miR-1:53-74]

---   uuu  --ga            c        a   -  auaa 
   gcc   ga    guuccaugcuuc uugcauuc aua gu    c
   |||   ||    |||||||||||| |||||||| ||| ||     
   cgg   cu    cGAGGUAUGAAG AAUGUAAG Uau cg    a
gaa   --u  aaag            A        G   a  aaau 

>dps-mir-2a-1 (-40.14)   [dps-miR-2a:47-69]

          -     -         a    auuuug 
gcugggcuca caaag ugguuguga augc      c
|||||||||| ||||| ||||||||| ||||       
cggcuCGAGU GUUUC ACCGACACU Uacg      u
          A     G         A    cccguu 

>dps-mir-2a-2 (-32.90)   [dps-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g aac 

>dps-mir-2b-1 (-41.90)   [dps-miR-2b:48-70]

                  -    g    cg  uug  a 
cugcgacgcucuuuaaag uggc guga  ug   gu a
|||||||||||||||||| |||| ||||  ||   ||  
ggcguugCGAGGAGUUUC ACCG CACU  ac   ua u
                  G    A    AU  uua  a 

>dps-mir-2b-2 (-37.30)   [dps-miR-2b:54-76]

       a          -         a   --uuu  cuu 
uuguguc uucuucaaag ugguuguga aug     gc   u
||||||| |||||||||| ||||||||| |||     ||    
agcacag GAGGAGUUUC ACCGACACU Uac     cg   u
       C          G         A   uuauc  uau 

>dps-mir-2c (-27.10)   [dps-miR-2c:64-86]

-u   auc    c  u       -      aa      aagaaa     -a   gc 
  ggu   cuua uu caguguc aucaaa  uggcug      gauau  uuu  a
  |||   |||| || ||||||| ||||||  ||||||      |||||  |||   
  cua   gagu aa guuaCGG UAGUUU  ACCGAC      CUAUg  aag  u
ag   --c    -  c       G      CG      -----A     cg   uu 

>dps-mir-3 (-34.39)   [dps-miR-3:48-69]

g                   g    u   ucuacgu 
 auccugggaugcauuuugu cagu aug       g
 ||||||||||||||||||| |||| |||        
 uaggACUCUGUGUGAAACG GUCA Uac       a
-                   G    C   uccuacu 

>dps-mir-4 (-25.50)   [dps-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag      u 
u  caau a  uuc  uggu guc agc     gugauu c
|  |||| |  |||  |||| ||| |||     |||||| u
g  guug u  aAG  ACCA CAG UCG     UAcuag c
 gu    c ug   UU    A   A   --AAA      u 

>dps-mir-iab-4 (-26.50)   [dps-miR-iab-4-5p:7-28] [dps-miR-iab-4-3p:41-64]

    -a             U    C   Ag  u 
ucgu  uACGUAUACUGAA GUAU CUG  ug a
||||  ||||||||||||| |||| |||  || u
agca  AUGCAUAUGACUU CAUA GGC  au c
    CA             C    U   cu  c 

>dps-mir-5 (-27.20)   [dps-miR-5:5-27]

--    -       C               cgu    u 
  gcua AAAGGAA GAUCGUUGUGAUAUG   uaau c
  |||| ||||||| |||||||||||||||   |||| a
  cgau uuuccuu uuagugacacuauac   auug c
cg    a       -               ---    c 

>dps-mir-6-1 (-29.80)   [dps-miR-6:50-71]

-uuugaag             ug     c     ---   c 
        uagagagaauagu  cugug uauau   guc u
        |||||||||||||  ||||| |||||   |||  
        gUUUUUCUUGUCG  GACAC AUaua   cag u
aaauccau             GU     U     ucu   c 

>dps-mir-6-3 (-30.20)   [dps-miR-6:53-74]

    a             ug   c        uucaa u 
caaa agaagggaacggu  cug ugauguag     g u
|||| |||||||||||||  ||| ||||||||     | u
guuu uUUUUUCUUGUCG  GAC ACUAUauu     c u
    g             GU   -        uaaca g 

>dps-mir-6-2 (-26.79)   [dps-miR-6:58-79]

cc     c       c  ug   c       uuauccacc  u 
  aaccg agggaac gc  cug ugauaua         ca c
  ||||| ||||||| ||  ||| |||||||         ||  
  uuggU UUUCUUG CG  GAC ACUAUau         gu u
--     U       U  GU   -       --cuuuaca  u 

>dps-mir-7 (-32.00)   [dps-miR-7:15-37]

ga      u     U       U  U     --       u   c 
  guguau ccgua GGAAGAC AG GAUUU  UGUUGUu ggu u
  |||||| ||||| ||||||| || |||||  ||||||| |||  
  uacgug ggcau ucuucug uc cuaaa  acaauaa ucg c
uc      c     -       u  c     ua       -   u 

>dps-mir-8 (-31.42)   [dps-miR-8:53-75]

        cu uu -       -   g     c      uccuu 
aaggacau  g  c acaucuu acc ggcag auuaga     u
||||||||  |  | ||||||| ||| ||||| ||||||     a
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu     g
        -- cu C       A   A     A      ccaua 

>dps-mir-9a (-29.00)   [dps-miR-9a:10-32]

    -     U       UAU      G     -  gau 
gcua uguug CUUUGGU   CUAGCU UAUGA gu   a
|||| ||||| |||||||   |||||| ||||| ||    
cgau auaau gaagcca   gaucga auacu ca   a
    u     u       uuc      a     g  aua 

>dps-mir-9b (-31.44)   [dps-miR-9b:15-37]

u   --c        aUC         UUU    G     uguaua 
 gca   auuauuug   UUUGGUGAU   AGCU UAUGg      u
 |||   ||||||||   |||||||||   |||| |||||       
 cgu   ugguaaac   aaaccacua   ucga auacc      c
a   uuu        cca         -uu    g     uagaaa 

>dps-mir-9c (-28.50)   [dps-miR-9c:13-34]

    uu    uuU         UCU    G     u  uuuu   a 
auuu  gcug   CUUUGGUAU   AGCU UAGAu gu    ugc c
||||  ||||   |||||||||   |||| ||||| ||    ||| a
uaaa  cgac   gaaaccaua   ucga aucua ua    aug u
    uu    cuc         uuu    a     c  ---u   u 

>dps-mir-10 (-31.00)   [dps-miR-10:9-29]

     ucu   -  G    U             acauu 
ccacg   ACC CU UAGA CCGAAUUUGUuuu     a
|||||   ||| || |||| |||||||||||||      
ggugu   ugg ga aucu ggcuuaaacagga     g
     guu   a  g    u             auuuc 

>dps-mir-11 (-25.50)   [dps-miR-11:45-65]

--   uu u          uu      cc  c  gac 
  cuc  g caagaacuua  cuguga  ug gu   a
  |||  | ||||||||||  ||||||  || ||    
  gag  C GUUCUUGAGU  GACACU  ac cg   u
gc   -u -          CU      AC  -  auu 

>dps-mir-12 (-30.90)   [dps-miR-12:7-29]

      UG     U    C          -  gcuuu 
uacggc  AGUAU ACAU AGGUACUGGU gu     a
||||||  ||||| |||| |||||||||| ||      
gugccg  ucaua ugua uucaugacca ca     a
      ca     u    -          a  accua 

>dps-mir-13a (-24.56)   [dps-miR-13a:47-68]

    u   c       -c        a   uugcau 
uacg aac caucaaa  gguuguga aug      u
|||| ||| |||||||  |||||||| |||      u
gugc uUG GUAGUUU  CCGACACU Uac      a
    u   A       UA        A   uaaacu 

>dps-mir-13b-1 (-21.10)   [dps-miR-13b:44-65]

   -ug           u      ccu    uacu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||    u
ggu   AGCAGUUUUAC GACACU   AUac    u
   uUG           C      ---    uaag 

>dps-mir-13b-2 (-24.50)   [dps-miR-13b:45-66]

auuu  g          a      gc    u uuu 
    ac cgucaaaaug cuguga  uaug g   u
    || |||||||||| ||||||  |||| |    
    UG GCAGUUUUAC GACACU  AUac c   u
-guu  A          C      --    u uag 

>dps-mir-14 (-26.40)   [dps-miR-14:41-61]

        c    cg      c    -ug u 
ugugggag gaga  gggacu acug   c u
|||||||| ||||  |||||| ||||   |  
auAUCCUC CUCU  UUCUGA Ugau   g u
        U    UU      C    gaa u 

>dps-mir-31a (-37.30)   [dps-miR-31a:14-36]

        ua       A     U         UGAaguugaaaa 
ucuguugg  aauUGGC AGAUG CGGCAUAGC            g
||||||||  ||||||| ||||| |||||||||            c
agguaacu  uugacug ucuac gucguaucg            g
        ua       a     -         caagaguuucua 

>dps-mir-31b (-22.80)   [dps-miR-31b:5-27]

-----------aau     A     UC  A       -Agag    aaga 
              uUGGC AGAUG  GG AUAGCUG     caaa    a
              ||||| |||||  || |||||||     ||||     
              aacug ucuac  cc uaucggc     guuu    g
aguuuacuuacguu     a     -u  g       guaaa    agua 

>dps-mir-33 (-37.62)   [dps-miR-33:16-36]

ccg      a    c  -G           C C        uccau 
   gagaug cacg AG  UGCAUUGUAGU G AUUGucug     c
   |||||| |||| ||  ||||||||||| | ||||||||     u
   cuuuac gugu uc  acguaacguca c uaacggac     u
--a      -    c  ga           a a        uuuag 

>dps-mir-34 (-37.70)   [dps-miR-34:17-38]

aauug   a  -   uu        U  U   C        --ua c    aua 
     gcu ug cgc  UGGCAGUG GG UAG UGGUUGug    g caaa   u
     ||| || |||  |||||||| || ||| ||||||||    | ||||    
     cga ac gcg  gccgucac uc auc accgacac    c guuu   u
-----   -  a   cc        u  u   -        uuac a    ccg 

>dps-mir-79 (-27.40)   [dps-miR-79:55-76]

cugcucu   uc        cgc       g     uag  u 
       gcu  ugcuuugg   uuuagcu uauga   au u
       |||  ||||||||   ||||||| |||||   || a
       cgg  ACGAAACC   AGAUCGA AUacu   ua a
---gucu   uU        AUU       A     uca  a 

>dps-mir-87 (-31.50)   [dps-miR-87:60-80]

-------  u     auu        -u  c     g     ------u  -  a 
       ca auuuc   cgcgccug  au uugcu aaccg       ag cc u
       || |||||   ||||||||  || ||||| |||||       || || a
       gu uaaag   GUGUGGAC  UA AACGA UUggc       uc gg a
acgaauu  u     agu        UU  A     G     ccuacuu  u  u 

>dps-mir-92a (-38.00)   [dps-miR-92a:54-75]

-------aua   a           a     -     u   c    uaaau 
          gag uugcccguagg cggga aggug caa guuu     u
          ||| ||||||||||| ||||| ||||| ||| ||||      
          uuc ggcgggUAUCC GCCCU UUCAC GUU Caaa     u
acacauacug   -           G     G     -   A    caagu 

>dps-mir-92b (-35.70)   [dps-miR-92b:60-81]

---uaaaa  u   -  ga         u c c     uu      c   gu 
        cg cac cu  uguaggccg g c agugc  auuugu guu  u
        || ||| ||  ||||||||| | | |||||  |||||| |||  u
        gc gug ga  aCGUCCGGC C G UCACG  UAAaca uaa  g
caacacac  u   a  -g         C U A     -U      -   aa 

>dps-mir-100 (-29.60)   [dps-miR-100:12-33]

-------------------c    a     AA        U   AA      - u uuu 
                    cauu acaga  CCCGUAAU CCG  CUUGUG c g   u
                    |||| |||||  |||||||| |||  |||||| | |    
                    guaa ugucu  ggguauua ggc  gaacau g c   a
acgguuuuuggucaacaaac    c     ga        c   ca      u u uau 

>dps-mir-124 (-33.20)   [dps-miR-124:57-79]

-----uc    g  a      ucucc      c      ag    a    uau 
       guuu gu cguuuu     ugguau cacugu  gccu uaug   u
       |||| || ||||||     |||||| ||||||  |||| ||||   u
       caaa ca gcgaGA     ACCGUA GUGGCG  CGGA AUac   c
aucaucu    g  g      -----      A      CA    -    cag 

>dps-mir-125 (-31.70)   [dps-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dps-mir-133 (-39.40)   [dps-miR-133:56-77]

------ua    g    u              cauc  gu     -  auu 
        caac gcug auguagcugguuga    gg  cagau cu   u
        |||| |||| ||||||||||||||    ||  ||||| ||   u
        guug ugac uaUGUCGACCAACU    CC  GUUua ga   a
caaccuua    g    -              -UCC  UG     u  acu 

>dps-mir-184 (-33.70)   [dps-miR-184:61-82]

ggucgacc    c  u  ua         -     g  -  ccg   gcau 
        ggug au cg  cccuuauca uucuc cg cc   ugu    u
        |||| || ||  ||||||||| ||||| || ||   |||     
        ccac ua gc  GGGAAUAGU AAGAG GC GG   aca    a
cuacucaa    -  u  uC         C     -  A  Uca   gaaa 

>dps-mir-210 (-36.82)   [dps-miR-210:50-70]

------------   -a     ugc        gc   -         uuaga 
            ggu  cuuau   agcugcug  cac ugcacaaga     u
            |||  |||||   ||||||||  ||| |||||||||     u
            ccg  gaaug   UCGGCGAC  GUG GCGUGUUcu     u
acuacgauuaua   ga     uuA        -A   U         cagaa 

>dps-mir-219 (-33.00)   [dps-miR-219:19-41]

---ua    -g     u   ua    U     AA           uug  a 
     auuc  auuuu agc  UGAU GUCCA  CGCAAUUCUUG   au u
     ||||  ||||| |||  |||| |||||  |||||||||||   || c
     uaag  uaaag ucg  gcua caggu  guguugggaac   ua c
caaca    aa     c   gc    -     ca           uca  a 

>dps-mir-263a (-38.14)   [dps-miR-263a:14-37]

-aca     g   a  UA   G     GA   AU       guuuuu 
    ucccg cac GU  AUG CACUG  AGA  UCACggg      c
    ||||| ||| ||  ||| |||||  |||  |||||||       
    agggc gug ua  uac gugau  ucu  agugccc      a
acuc     -   g  uc   g     uc   --       aacaua 

>dps-mir-263b (-37.70)   [dps-miR-263b:16-36]

uu     -    g cuC        G G     U     uug  uu 
  gcugg cauu g   UUGGCACU G AGAAU CACag   gu  c
  ||||| |||| |   |||||||| | ||||| |||||   ||   
  cggcu guaa c   aaccgugg c ucuug guguc   ua  c
-u     u    g uaa        g g     -     uua  ua 

>dps-mir-274 (-41.30)   [dps-miR-274:19-44]

ucccg             -UU      C  A  CU        AUgg   g 
     ugcugcaguuuca   UUGUGA CG CA  AACGGGUA    cug c
     |||||||||||||   |||||| || ||  ||||||||    |||  
     acgacguuaaagu   aacacu gc gu  uugcucau    gac c
----a             cau      a  -  uu        -cag   g 

>dps-mir-275 (-46.90)   [dps-miR-275:56-78]

aaa    cc              -a    ag   gg     guuuu 
   gucu  uaccaugcgcgcua  ucag  acc  ggcug     u
   ||||  ||||||||||||||  ||||  |||  |||||      
   caga  gugguGCGCGCGAU  AGUC  UGG  CUgac     u
--a    uc              GA    CA   -A     gucac 

>dps-mir-276a (-38.46)   [dps-miR-276a:56-77]

----------cc      uug   uc    a     ag          uucaua 
            ugguuu   cca  agcg gguau  aguuccuacg      u
            ||||||   |||  |||| |||||  ||||||||||      u
            accaga   ggu  UCGU CCAUA  UCAAGGAUgc      a
aagcaacagaaa      --a   UC    G     CU          ucaaau 

>dps-mir-276b (-38.20)   [dps-miR-276b:62-83]

aaa c  -    u  uua   uc    a     a           u  cgua 
   g ga agcc cu   cca  agcg gguau gaguuccuacg gc    u
   | || |||| ||   |||  |||| ||||| ||||||||||| ||     
   c cu ucgg ga   ggu  UCGU CCAUA UUCAAGGAUgc ug    c
cua -  g    -  ---   UC    G     A           -  aaac 

>dps-mir-277 (-38.90)   [dps-miR-277:59-81]

----   a g       gu  -   gu    -            --  gaaac 
    uug a guuuugg  ug cgu  cagg agugcauuugca  cu     a
    ||| | |||||||  || |||  |||| ||||||||||||  ||      
    aac u caagacc  AC GCA  GUCU UCACGUAAAUgu  ga     u
uucu   a g       uu  A   UG    A            uc  agucu 

>dps-mir-278 (-39.00)   [dps-miR-278:57-78]

-------gu      acgg     c       u     a  a      u  cu 
         aauggu    ugcga cggacga gguuc ca cgaccg gu  c
         ||||||    ||||| ||||||| ||||| || |||||| ||  u
         uuaccg    augUU GCCUGCU UCAGG GU GCUggu ca  u
agcgacugu      --ca     U       U     -  G      -  aa 

>dps-mir-279 (-37.30)   [dps-miR-279:62-83]

ucau         u          a     c  uguu     uug   u 
    acuacuguu uuagugagug ggguc ag    ucaca   auu u
    ||||||||| |||||||||| ||||| ||    |||||   ||| c
    ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   uga u
--cu         u          A     A  ----     uua   u 

>dps-mir-280 (-31.60)   [dps-miR-280:9-35]

---------       ---a     U   G                --A      
         ggcuuuu    UGUAU UAC UUGCAUAUGAAAUGAU   uuuau 
         |||||||    ||||| ||| ||||||||||||||||   |||| a
         ccgagaa    acgug aug gacguauauuuuauua   aaaug 
guuaccugu       gucg     u   -                gac      

>dps-mir-281-1 (-33.73)   [dps-miR-281:56-78]

      gg  a           -ug     c      caacgua 
cgaaua  ug auaaagagagc   uccgu gacagu       c
||||||  || |||||||||||   ||||| ||||||       c
gcuuau  au UGUUUCUCUCG   AGGUA CUGUca       a
      -a  a           UUA     -      uaauuua 

>dps-mir-281-2 (-33.30)   [dps-miR-281:59-81]

      gug a           -ua     c      ---ca    a 
cgaaua   a auaaagagagc   uccgu gacagu     aguu a
||||||   | |||||||||||   ||||| ||||||     |||| u
gcuuau   u UGUUUCUCUCG   AGGUA CUGUca     uuag c
      -aa a           UUA     -      uaaug    a 

>dps-mir-282 (-37.70)   [dps-miR-282:10-37]

---ug    -auaA           AC      U      Ugcau   aa 
     ccuu     AUCUAGCCUCU  UAGGCU UGUCUG     uug  a
     ||||     |||||||||||  |||||| ||||||     |||   
     ggaa     uggauuggaga  auccga acagac     agc  a
aagaa    ccaug           au      u      ----u   cc 

>dps-mir-283 (-30.00)   [dps-miR-283:18-38]

cucac     uc      AA           U         a cuaag  a 
     gauuc  aaaggU  AUAUCAGCUGG AAUUCUggg g     ca g
     |||||  ||||||  ||||||||||| ||||||||| |     || a
     uuaag  uuuuca  uaugguugacu uuaaggcuc c     gu u
-----     uu      gc           -         a --aaa  a 

>dps-mir-284 (-44.40)   [dps-miR-284:64-92]

----         c              acuguguagccugggaaggcaag 
    guugcaguu cuggaauuaaguug                       g
    ||||||||| ||||||||||||||                        
    cggcGUUAA GACCUUAGUUCAAC                       c
aacc         C              GACUGAAGUcuucgucacgaguu 

>dps-mir-285 (-33.50)   [dps-miR-285:65-86]

---  ga       -a     ga    u      a    uaucaa     cuc 
   uc  aucgaag  acuga  ucga uggugc uaga      gagga   g
   ||  |||||||  |||||  |||| |||||| ||||      |||||    
   ag  uaguuuu  UGACU  AGCU ACCACG AUcu      cuuuu   c
cca  ag       CG     AA    U      -    ---caa     aau 

>dps-mir-286 (-32.84)   [dps-miR-286:62-84]

---         aaug    u   -               --uuacca    
   uuaaaauua    gcga ugu cgguuuggucgcuuu        ggg 
   |||||||||    |||| ||| |||||||||||||||        || u
   gauuuuaau    UGCU ACA GCCAGAUCAGUgaag        ccu 
uaa         aUCG    C   A               cgaacuag    

>dps-mir-287 (-19.00)   [dps-miR-287:52-72]

------a    ug    uggggccugaa     gc           a 
       ugug  agug           auuuu  acacauuuaca u
       ||||  ||||           |||||  ||||||||||| a
       aCAC  UUGC           UAAAA  UGUGUaaaugu a
aguguca    GU    -----------     GU           u 

>dps-mir-288 (-36.41)   [dps-miR-288:65-87]

-    a      -------   ua   -   ua      u       a  a 
 ggcc ugucgu       aau  gca ggg  cagcgu gccggcg ua u
 |||| ||||||       |||  ||| |||  |||||| ||||||| || u
 ccgg acaGUA       UUA  UGU CUU  guugca ugguugc gu a
g    c      CUUUACU   GC   A   Ug      c       a  a 

>dps-mir-289 (-30.30)   [dps-miR-289:16-41]

-gag     a   -a      UA         ---     ----- C  -    g 
    uuuac gug  aaUAAA  UUUAAGUGG   AGCCU     G GA CUgg a
    ||||| |||  ||||||  |||||||||   |||||     | || ||||  
    aaaug cac  uuguuu  gaguucacu   ucggg     c cu gacc c
caga     -   gg      gc         caa     ucagc u  c    u 

>dps-mir-304 (-28.10)   [dps-miR-304:12-34]

    ca    a       AAU       U     c au ug    
gcag  uuga UAAUCUC   UUGUAAA GUGAG g  u  agg 
||||  |||| |||||||   ||||||| ||||| |  |  || c
cguc  agcu guuagag   aacguuu cacuc c  a  uua 
    aa    c       guc       -     a ac gu    

>dps-mir-305 (-24.50)   [dps-miR-305:8-30]

     cu U         U  G     CU  u  guc 
caugu  A UGUACUUCA CA GUGCU  Gg gu   c
|||||  | ||||||||| || |||||  || ||    
guaua  u acaugaagu gu cacgg  cc ca   u
     ac c         u  a     --  -  aug 

>dps-mir-306 (-38.80)   [dps-miR-306:13-34]

-    uu     cU       UU  U        --   - u 
 cacu  gccgg  CAGGUAC  AG GACUCUCA  Aug c u
 ||||  |||||  |||||||  || ||||||||  ||| |  
 gugg  cgguc  guccgug  uc cugagagu  uac g u
g    --     ac       uc  u        uc   a c 

>dps-mir-307 (-38.10)   [dps-miR-307:56-75]

         -   a         ccu  g       -u    uc 
ugucuugcu uug cucacucaa   gg ugugaug  uauu  g
||||||||| ||| |||||||||   || |||||||  ||||  a
auaggacga agc GAGUGAGUU   CC ACACUac  augg  u
         u   -         CCU  A       cu    ua 

>dps-mir-308 (-27.20)   [dps-miR-308:41-62]

           u       uuuug      c 
cucgcaguaua uuuugug     uugugu u
||||||||||| |||||||     |||||| g
GAGUGUCAUAU AGGACAC     Aacgca a
           U       ---UA      a 

>dps-mir-309 (-25.50)   [dps-miR-309:43-64]

      c         ug      u    caac 
auuaua gauaaacuu  uucagu uugc    u
|||||| |||||||||  |||||| ||||     
uaauAU CUGUUUGAA  GGGUCA Gacg    u
      U         GU      C    uucg 

>dps-mir-314 (-30.30)   [dps-miR-314:69-89]

u  u       g     u   au     uaguu    ---a   c   g 
 cg aacuugu uggcu cga  guacc     gagg    aaa ucc a
 || ||||||| ||||| |||  |||||     ||||    ||| ||| a
 GC UUGAAUA ACCGA GCU  UAUgg     cucc    uuu agg a
G  -       -     -   --     ----u    auug   u   u 

>dps-mir-315 (-29.93)   [dps-miR-315:12-33]

       cuau       U       A       cuuauaa 
cacuuau    UUUUGAU GUUGCUC GAAAGCc       u
|||||||    ||||||| ||||||| |||||||       u
gugaaua    gaaacua uaacgag cuuucgg       a
       aacc       u       -       uugacca 

>dps-mir-316 (-29.00)   [dps-miR-316:16-37]

      -    c   u           G   -A   G    uuau 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uua gcggaaaaagg gaa  gac gcaa    c
      u    u   u           -   ag   a    cuag 

>dps-mir-317 (-35.49)   [dps-miR-317:55-78]

u   --  u         aua    --     c      ugaauau 
 gca  ac gccguuggg   cacc  cugug ucgcuu       g
 |||  || |||||||||   ||||  ||||| ||||||        
 cgu  ug cggUAACCU   GUGG  GACAC AGUgaa       g
a   cu  c         AUG    UC     A      cgaacgu 

>dps-mir-318 (-24.10)   [dps-miR-318:43-64]

u          c  c         uu  -  ac 
 uuaugggaug ac aaguucagu  ug uc  a
 |||||||||| || |||||||||  || ||  u
 aauACUCUAU UG UUCGGGUCA  ac ag  u
g          U  U         CU  g  cu 

>dre-mir-7b (-42.30)   [dre-miR-7b:23-43]

ugaac     -    cuu     U  A     U       U     ug  aguu 
     gcugg cuug   cugug GG AGACU GUGAUUU GUUgu  uu    a
     ||||| ||||   ||||| || ||||| ||||||| |||||  ||     
     cgacc ggac   gacau cc ucugg cacuaaa caaca  ga    g
--cua     c    -ac     c  g     -       -     gu  agua 

>dre-mir-7a-1 (-22.29)   [dre-miR-7a:3-25]

-------------  U  A     A       U      guuucuu 
             ug GG AGACU GUGAUUU GUUGUu       c
             || || ||||| ||||||| ||||||        
             ac cc ucuga cacugaa caacag       u
ucccgggcgagcg  u  a     -       -      ucuuucg 

>dre-mir-7a-2 (-32.90)   [dre-miR-7a:13-35]

----------      g    aU  A     A       U      gug  gu 
          uuuugg cauu  GG AGACU GUGAUUU GUUGUu   ac  c
          |||||| ||||  || ||||| ||||||| ||||||   ||  a
          aagacc guga  cc ucuga cacugaa caacag   ug  u
cugcucaccu      a    cu  g     -       -      uca  ac 

>dre-mir-10a (-36.50)   [dre-miR-10a:18-39] [dre-miR-10a*:55-76]

--------uguc     u        A     U   UC          ugaau 
            uguca cuauauaU CCCUG AGA  CGAAUUUGUg     a
            ||||| |||||||| ||||| |||  ||||||||||      
            acagu gauguAUA GGGGU UCU  GCUUAAACgc     u
cgcaacacaaau     u        A     -   GU          ugaca 

>dre-mir-10b-1 (-29.66)   [dre-miR-10b:10-32]

gu        A    G     C          ugaaaa 
  cuauauaU CCCU UAGAA CGAAUUUGUG      a
  |||||||| |||| ||||| ||||||||||      a
  gguauaug gggg aucuu gcuuagacac      u
cu        a    -     a          uuacaa 

>dre-mir-34 (-39.60)   [dre-miR-34:19-40]

cugcu    gu    -  c         -   A          g   gga 
     guga  gguu cu UGGCAGUGU CUU GCUGGUUGUu ugu   g
     ||||  |||| || ||||||||| ||| |||||||||| |||   u
     cacu  ucaa ga gccgucaua gaa cgacuaacga gca   g
--uuc    gc    a  c         u   -          a   aga 

>dre-mir-181b-1 (-27.90)   [dre-miR-181b:37-58]

cauguacgcaccuucaguucuucaaa       aucA          CUG    U     ua  cu 
                          ggucaua    ACAUUCAUUG   UCGG GGGuu  gu  u
                          |||||||    ||||||||||   |||| |||||  ||   
                          ccggugu    uguaaguaac   aguc cucga  ca  g
--------------------uuagac       -caa          --a    u     --  au 

>dre-mir-181b-2 (-31.30)   [dre-miR-181b:16-37]

cuaa  -      auaAA         CU           ---  u 
    ug acugca     CAUUCAUUG  GUCGGUGGGuu   uc a
    || ||||||     |||||||||  |||||||||||   || a
    ac uggcgu     guaaguaac  uagucacucaa   ag u
---a  g      caaac         --           cac  a 

>dre-mir-182 (-21.80)   [dre-miR-182:4-25] [dre-miR-182*:48-68]

guaU       U -G      UCA      ---   g 
    UUGGCAA G  UAGAAC   CAcugg   uga g
    ||||||| |  ||||||   ||||||   ||| u
    AACCGUU C  AUCUUG   GUggcc   acu a
-AUC       - AG      ---      uag   g 

>dre-mir-183 (-37.94)   [dre-miR-183:16-38]

---------ga   c        g      --AC     GA        ugaaag 
           cuc uguucugu UAUGGC    UGGUA  AUUCACUG      c
           ||| |||||||| ||||||    |||||  ||||||||       
           gag acgagaca auaccg    accau  uaagugac      a
gcaccaagaaa   -        a      ggaa     --        uaucac 

>dre-mir-187 (-48.80)   [dre-miR-187:61-80]

ugaccuguggcu gg   gg                  ----     c  u 
            g  cca  ggcugcaacacaggacau    gggag ug c
            |  |||  ||||||||||||||||||    ||||| || u
            c  ggu  CCGACGUUGUGUUCUGUG    cccuc ac c
-----------g aa   ga                  CUcg     -  u 

>dre-mir-192 (-38.40)   [dre-miR-192:16-36]

cuaggac       gA  A     -          C    guuug 
       acagggu  UG CCUAU GAAUUGACAG Cagu     c
       |||||||  || ||||| |||||||||| ||||      
       ugucccg  ac ggaug cuugacuguc gucg     a
------u       uc  c     u          c    accug 

>dre-mir-196a-1 (-45.50)   [dre-miR-196a:21-42]

------------c   c     gu        U          A          auu    
             gcg ggcug  gcgugguu AGGUAGUUUC UGUUGUUGGG   ggc 
             ||| |||||  |||||||| |||||||||| ||||||||||   || u
             ugc uugac  ugcauuag uccgucaaag acaacagcuc   ccu 
cgggaacuacuuc   -     --        u          a          ggu    

>dre-mir-199-1 (-35.30)   [dre-miR-199:15-37] [dre-miR-199*:53-74]

u  -   u c   auC       U        C   ---    ga 
 cc ugc c guc   CCAGUGU CAGACUAC UGU   UCag  u
 || ||| | |||   ||||||| |||||||| |||   ||||  c
 gg acg g cag   GGUUACA GUCUGAUG ACA   gguc  a
-  u   u u   aUU       C        -   Ugu    au 

>dre-mir-199-2 (-39.70)   [dre-miR-199:30-52] [dre-miR-199*:68-89]

ggaguuuuuguggacgcccgu  c     C       U        C   U    aau 
                     cc gccug CCAGUGU CAGACUAC UGU Cagg   u
                     || ||||| ||||||| |||||||| ||| ||||    
                     gg cggaU GGUUACA GUCUGAUG ACA guuu   a
---------------------  u     U       C        -   U    gug 

>dre-mir-199-3 (-43.10)   [dre-miR-199:16-38]

-------cc    --   c     C       U A      C      ucau  u 
         uccc  ccu gccug CCAGUGU C GACUAC UGUUCa    gc g
         ||||  ||| ||||| ||||||| | |||||| ||||||    ||  
         aggg  ggg cggau gguuaca g cugaug acaagu    cg c
cacacacac    uc   u     u       c c      -      ----  a 

>dre-mir-203a (-33.10)   [dre-miR-203a:70-91]

guguuugggucucuucuggucccu     gc         u    g    a     cua 
                        cuggu  agugguucu aaca uuca caguu   u
                        |||||  ||||||||| |||| |||| |||||   c
                        gacca  UCACCAGGA UUGU AAGU Guuaa   u
------------------------     GU         U    A    -     aac 

>dre-mir-204-1 (-34.10)   [dre-miR-204:18-39]

---------------ucauguga   gug        UUU   A    ---A   C 
                       ccu   gacUUCCC   GUC UCCU    UGC U
                       |||   ||||||||   ||| ||||    ||| g
                       gga   cugaaggg   cgg ggga    aug g
cgcuuacuacugcggacucgcag   -aa        --u   -    gaua   a 

>dre-mir-205 (-35.30)   [dre-miR-205:19-40]

aaacua     ca     UC      U    C        --  uag 
      cugug  uucua  CUUCAU CCAC GGAGUCUG  ug   u
      |||||  |||||  |||||| |||| ||||||||  ||    
      ggcac  aggau  gaagug ggug cuuuagac  ac   u
-----a     aa     gu      u    a        ua  uug 

>dre-mir-210 (-25.69)   [dre-miR-210*:8-29] [dre-miR-210:48-69]

gca   a    A   ACUA       U  cgccuau 
   ggu AGCC CUG    ACGCACA UG       u
   ||| |||| |||    ||||||| ||        
   ccA UCGG GAC    UGCGUGU ac       c
-ga   A    C   AGUG       C  cucaccu 

>dre-mir-181a-1 (-30.90)   [dre-miR-181a:14-36] [dre-miR-181a*:56-77]

guuu   u   u A   U      CU       A    -gag  a 
    gcc cag g ACA UCAACG  GUCGGUG GUuu    cu a
    ||| ||| | ||| ||||||  ||||||| ||||    ||  
    cgg guc C UGU AGUUGC  CAGCUAC CAaa    gg a
----   c   C A   U      --       -    aaaa  u 

>dre-mir-214 (-56.00)   [dre-miR-214:62-82]

ugacuga a  -  ug               aca            aacuu 
       g gc gu  ucugucugccugucu   cuugcugugcag     c
       | || ||  |||||||||||||||   ||||||||||||      
       c cg cg  agacaGACGGACAGA   GGACGACAuguc     c
---uccg c  a  gu               CAC            cacgu 

>dre-mir-216a-1 (-39.60)   [dre-miR-216a:15-36]

-    auuuu     U         U   AA       --ua   u 
 gcug     uggca AAUCUCAGC GGC  CUGUGAg    gug u
 ||||     ||||| ||||||||| |||  |||||||    |||  
 cgac     acugu uuggggucg ucg  gacacuc    uac u
a    -acac     c         -   cg       uccc   u 

>dre-mir-217-1 (-49.50)   [dre-miR-217:25-46]

augagaa     u          aUAC                U  ---a  a 
       cuuuc gauguuggug    UGCAUCAGGAACUGAU GG    ug u
       ||||| ||||||||||    |||||||||||||||| ||    || a
       gaaag cuacgacuac    acguaguccuugacua cc    ac u
------a     -          ccuc                -  gagg  u 

>dre-mir-219-1 (-33.97)   [dre-miR-219:15-36]

a     -    ag  U   U     AA           uaacauau 
 ggguc ccag  au GAU GUCCA  CGCAAUUCUUg        a
 ||||| ||||  || ||| |||||  |||||||||||         
 cuuag gguc  ug cua caggu  guguuaagaac        a
-     a    gu  u   -     cc           cuaaauau 

>dre-mir-219-2 (-24.90)   [dre-miR-219:1-22]

---------------U   U     AA           ugaaa  -  g 
                GAU GUCCA  CGCAAUUCUUg     ug uc a
                ||| |||||  |||||||||||     || ||  
                cua caggu  guguuaagagc     ac ag g
ccucggaggucguugu   -     cc           ---ug  u  c 

>dre-mir-220 (-36.20)   [dre-miR-220:23-43]

-ga     uggcg   ua   ---c   ACA        --         g  a ac g 
   cagug     uug  ggg    uCC   ACCGUAUC  GGACACUUu gg g  g c
   |||||     |||  |||    |||   ||||||||  ||||||||| || |  |  
   gucau     ggc  ucc    agg   uggcguag  cuuguggaa uc c  c a
gua     -ucua   gc   ucaa   -cc        ua         g  a -a c 

>dre-mir-221 (-38.00)   [dre-miR-221:48-70]

-------------------   gu     ug   u         auuu     u     
                   guc  gaacc  gca acaauguag    cugug ggua 
                   |||  |||||  ||| |||||||||    ||||| ||| c
                   cgg  UUUGG  CGU UGUUACAUC    GAcau cuau 
cucgucuuaauaagacgac   aC     GU   C         ----     -     

>dre-mir-222 (-45.30)   [dre-miR-222:68-91]

gccgguggcuu  -uc      u   g   u             -     auc   ugu 
           gu   gggugc cau aga gcucaguagucag uguag   cug   c
           ||   |||||| ||| ||| ||||||||||||| |||||   |||   a
           cg   uuuacg gua uCU UGGGUCAUCGGUC ACAUC   gac   c
----------u  ucu      -   g   C             U     GAc   uaa 

>dre-mir-223 (-35.50)   [dre-miR-223:71-91]

cucuccuccugaucuagacu        a a              gugguu       gau 
                    cuucucuu g guauuugacagacu      gacacuc   c
                    |||||||| | ||||||||||||||      |||||||   u
                    ggagagaa C CAUAAACUGUUUGA      CUGUggg   a
--------------------        C C              ------       gaa 

>cbr-mir-353 (-32.60)   [cbr-miR-353:30-50]

gaagauaugcaaaauaaaaa    ggg    A   U     --           u  uu      
                    gcau   caCA GUA CAUGU  GUUGGUAUCau gu  caagu 
                    ||||   |||| ||| |||||  ||||||||||| ||  |||| u
                    cgug   gugu cau guacg  uagcuauggua cg  guuua 
---------------aacag    -aa    g   c     aa           u  uu      

>cbr-mir-64 (-44.50)   [cbr-miR-64:25-47]

u    aau  uc   -       -ac    A   UGA    U U     u  aaag 
 caag   cc  ggc cucgccg   CAUG CAC   AGCG G ACGGA gg    u
 ||||   ||  ||| |||||||   |||| |||   |||| | ||||| ||     
 guuu   gg  ccg gagcggc   guac gug   ucgc c ugccu cc    u
-    cac  uu   u       aac    c   uga    - u     u  gaag 

>cbr-mir-231 (-39.60)   [cbr-miR-231:56-79]

------cu      ---  aau               -uc   -        uu     
        agcacc   uc   guuguucugucuguu   cau agcuuaua  guaa 
        ||||||   ||   |||||||||||||||   ||| ||||||||  ||| g
        uugugg   ag   caacAGGACGGACAA   GUG UCGAAUau  caug 
acuuuuuu      uga  -gu               CAA   C        -u     

>cbr-mir-356 (-33.70)   [cbr-miR-356:20-40]

----------------------ccucauccaaccaa     A     -AAC   -AA      C   u 
                                    ugugg UGAGC    GCG   CAAAUC ucu a
                                    ||||| |||||    |||   |||||| |||  
                                    acacc acucg    cgc   guuuag aga u
gagcagaagacuaaggaccguggaagacuuucgguc     -     ccgc   acc      -   a 

>cbr-mir-83 (-32.80)   [cbr-miR-83:66-87]

gcagaa   a - ---a u      a              u  a  u  -  --  ga 
      ggc c c    c cgaaaa acugaguuuaugug gu cu ga cg  gc  u
      ||| | |    | |||||| |||||||||||||| || || || ||  ||  c
      ccg g g    g gcuuuU UGACUUAAAUAUAC CA GA cu gc  cg  a
uuugaa   a a acag u      G              -  C  U  a  aa  ag 

>cbr-mir-246 (-35.90)   [cbr-miR-246:65-86]

---gaaaagu  -    gauaa      a    g       u        -    aa 
          cc uagu     aacagc ccug ccaauau auguaaua ucag  g
          || ||||     |||||| |||| ||||||| |||||||| ||||  c
          gg aucg     uugUCG GGAU GGUUAUG UACAUUau aguu  a
uggguaaauu  u    --aac      A    G       -        u    aa 

>cbr-mir-51 (-49.50)   [cbr-miR-51:44-66]

cgucaucgaaucucaacgucaaacggauccgaagacguccaucUACC          ---U       Ua    uaa  g gaa 
                                               CGUAGCUCCU    GCCAUGU  cugg   aa u   c
                                               ||||||||||    |||||||  ||||   || |   a
                                               guauugagga    cgguaca  ggcc   uu a   u
-----------------------uuagaacuuuggaguugugcagaa          ugac       ug    ugg  g agg 

>cbr-mir-357-1 (-33.80)   [cbr-miR-357:67-87]

-----cuaca  aga   ga        c   g    c  c u          --cua    
          uc   aga  cagcgaau ccg caau ac g gcauuuucau     cca 
          ||   |||  |||||||| ||| |||| || | ||||||||||     || g
          ag   ucu  guugcuua GGC GUUA UG C CGUAAAAgua     gga 
uacgaaauua  --g   aa        A   A    C  A -          aucac    

>cbr-mir-253 (-41.50)   [cbr-miR-253:29-49]

--a   --uuu    -a     a            - A   C       -   ACUac 
   aca     uucg  guuuc guccuucucaCA C CCU ACUAACA CUA     a
   |||     ||||  ||||| |||||||||||| | ||| ||||||| |||      
   ugu     aagc  uagag cgggaagggugu g gga ugauugu gau     g
acg   uucau    ag     g            u c   -       a   cuuua 

>cbr-mir-70 (-35.70)   [cbr-miR-70:58-80]

-------------------a      a  uau    a      g   -       ag     --  u 
                    aaacgg ug   cucu ggaaca cca ucaugua  acauu  uc a
                    |||||| ||   |||| |||||| ||| |||||||  |||||  || a
                    uuugcc au   gaGA CCUUGU GGU AGUGCAU  Uguag  ag c
aaaccuuuuuauuuucuucc      -  -uu    C      -   U       AA     aa  u 

>cbr-mir-358 (-41.39)   [cbr-miR-358:63-84]

-------a   -  -cauu        u   -     ucc         a  u auaucca 
        cuc cc     cggauuga acc cgacu   ggauaccaa ug c       a
        ||| ||     |||||||| ||| |||||   ||||||||| || |        
        gag gg     gucuaacu uGG GCUGA   CCUAUGGUU AC g       c
uguuguga   c  cacau        c   U     -UU         A  u cuuugcu 

>cbr-mir-61 (-42.40)   [cbr-miR-61:58-80]

----------uacuuga      u       c         cuaa     c  -   g 
                 ucggug cucgagc gaguuaagg    uaguc uu ccg u
                 |||||| ||||||| |||||||||    ||||| || ||| g
                 agucau gagCUCG CUCAGUUCC    AUCAG aa ggu u
cccgccccaguuucucg      u       U         -AAG     U  u   a 

>cbr-mir-360 (-37.00)   [cbr-miR-360:63-83]

--uuc   -aaaa    -  c      u      c  uu          ---au   u 
     cau     aagc gc uagggu uuguga cg  guuacgguca     uca g
     |||     |||| || |||||| |||||| ||  ||||||||||     |||  
     gua     uucg ug guucca AACACU GC  UAAUGCCAGU     agu u
uuaaa   auaag    g  u      c      U  CC          aacac   c 

>cbr-mir-239a (-33.80)   [cbr-miR-239a:29-51]

gagaaugac     aa   uau  g            CAAU     A     --   - ag 
         gaucc  guu   gc auuUUUGUACUA    UAGGU CUGGa  cac c  c
         |||||  |||   || ||||||||||||    ||||| |||||  ||| |   
         uuagg  caa   cg uaaaaacaugau    aucua gaccu  gug g  a
----uagaa     -a   --u  a            -cau     a     au   a cg 

>cbr-mir-249 (-42.70)   [cbr-miR-249:75-96]

auuuguuauuuugugcgc   caa g u                    a    ac      uga 
                  ccu   u c acuagcaacgcucaaaaauc cugu  gacaaa   c
                  |||   | | |||||||||||||||||||| ||||  ||||||   u
                  gga   a g ugauCGUUGUGAGUUUUUAG GACA  CUguuu   a
------------------   -ag g c                    -    --      uau 

>cbr-mir-240 (-36.80)   [cbr-miR-240:72-93]

cgcugucuuuauuuuga     -uu      u         c      u a    aa   c 
                 aacug   uucaaa cgagaauuu gaggcc g augc  gaa c
                 |||||   |||||| ||||||||| |||||| | ||||  |||  
                 uugau   aaguuU GCUUUUAAA CUCCGG C Uacg  uuu g
----------gugcgca     uuu      C         C      U A    ag   u 

>cbr-mir-254 (-41.50)   [cbr-miR-254:63-85]

cuccacucua   -                aa   -uc     u    c  - a 
          ugc ggguugccguauacag  gca   gauuu caca gc c u
          ||| ||||||||||||||||  |||   ||||| |||| || | g
          acg uuuagcggcAUAUGUC  CGU   CUAAA GUgu cg g a
guuauaccag   a                AA   UUU     C    c  c u 

>cbr-mir-239b (-39.90)   [cbr-miR-239b:20-40]

---------------------ua    -  -aca   a            C       UA    cu 
                       ggac ag    ugc auuuUUGUACUG ACAAAAG  CUGa  a
                       |||| ||    ||| |||||||||||| |||||||  ||||  u
                       ccug uc    acg uaagaacgugac uguuuuc  gacu  u
uuaacaaauuagggauuuuuuua    g  gaga   g            c       gc    cu 

>cbr-mir-62 (-29.02)   [cbr-miR-62:61-82]

------cccuugcaacucggcuauuauaag           cc      -c     c 
                              guggguuagau  cauauc  uuccg u
                              |||||||||||  ||||||  ||||| u
                              CAUUCGAUCUA  GUAUAG  aaggu g
aucguggcagaaccucuacaacucucugGA           AU      Ua     a 

>cbr-mir-55 (-41.90)   [cbr-miR-55:68-90]

-aaa     -a    cacaaa     a            -    gu      -   cac 
    auuga  ucgu      ggggg cucggcggaaaa uaug  gguaua cua   a
    |||||  ||||      ||||| |||||||||||| ||||  |||||| |||   g
    uaacu  agca      ucccc GAGCCGUCUUUU AUAU  CCAUau gau   u
ggaa     ac    ----cc     -            U    GC      a   aag 

>cbr-mir-84 (-29.00)   [cbr-miR-84:39-60]

uugcuauauauucagccguacugucugaaaau    u      U    U C    C   C   guaa 
                                aaca cUGAGG AGUU G AAUG UGU gac    c
                                |||| |||||| |||| | |||| ||| |||    u
                                uugu ggcucc ucaa c uuac aca cug    g
----------------------aucggaaaac    c      u    c -    u   a   aaaa 

>cbr-mir-354 (-30.62)   [cbr-miR-354:80-100]

cc        cuaagugccuu  u     u       -    ucc  -----c   --a   u 
  agagccga           gg gcggc acagacg ggua   gg      ucg   ugu c
  ||||||||           || ||||| ||||||| ||||   ||      |||   |||  
  uuuugguu           CC CGUCG UGUUUGU CCAu   cc      agc   aca a
--        ---------uU  U     U       U    uuu  uuucuc   gcc   u 

>cbr-mir-35 (-42.60)   [cbr-miR-35:59-80]

-----------ua u      ----cu       c          u  uu        uu   a 
             g ccaguu      ggacauu gcggguuuuu cc  cggugaua  cga g
             | ||||||      ||||||| |||||||||| ||  ||||||||  |||  
             c ggucag      ucuguGA CGUUCAAAAG GG  GCCACUau  gcu a
uauguucguuuua u      cuucgu       A          U  --        -c   a 

>cbr-mir-36 (-55.80)   [cbr-miR-36:64-85]

auu   au    -    -                   ug  g     u    acu 
   cca  ugaa accu ucggaccauugugaauuuu  cu cggug uaca   a
   |||  |||| |||| |||||||||||||||||||  || ||||| ||||   a
   ggu  acuu uggg agccuggUAACGCUUAAAA  GG GCCAC augu   c
---   gu    a    u                   GU  -     U    cua 

>cbr-mir-38 (-58.40)   [cbr-miR-38:70-91]

--     u ug   - -                 --     uu       --------     c 
  auuca g  gag c cuggaccuguaccgggu  ucucu  gugguga        uauga a
  ||||| |  ||| | |||||||||||||||||  |||||  |||||||        |||||  
  uaggu c  cuc g gaccuggaUAUGGUCCA  AGAGG  CACUauu        auacu a
gg     - gu   a c                 AC     GC       ccuuacca     c 

>cbr-mir-39 (-46.20)   [cbr-miR-39:65-86]

---auauuc         --        c     g  c     g a      ag  au 
         cagagaugc  agggagcc aacug uu ucacu c gugaua  cu  g
         |||||||||  |||||||| ||||| || ||||| | ||||||  ||  u
         gucucuacg  uuucucgG UUGGC AA AGUGG G CACUau  ga  u
guccccuau         aa        A     A  A     - C      cu  ca 

>cbr-mir-40 (-47.26)   [cbr-miR-40:71-92]

c     ---au   c     u     c   g    uu    g a      u  cgcauu 
 ucugu     ccc ugccc caccc agc gguu  cauc c gugaua ga      c
 |||||     ||| ||||| ||||| ||| ||||  |||| | |||||| ||      a
 agaca     ggg gcggg guggG UCG CUAA  GUGG G CACUau cu      a
-     ccuau   c     u     A   A    CU    - C      u  uuacca 

>cbr-mir-41 (-43.00)   [cbr-miR-41:68-88]

-----      cag     aaau       ug          gua      caaca   aag 
     ugaaag   guccc    gccuugg  guuuuucgcc   gugaua     ucg   c
     ||||||   |||||    |||||||  ||||||||||   ||||||     |||    
     auuuuu   caggg    uggaACC  CAAAAAGUGG   CACUau     agc   c
uguuu      --a     ---c       CU          -GC      -----   aua 

>cbr-mir-355 (-42.60)   [cbr-miR-355:33-53]

cuacugauu   a         aa    a    U         CU -       ----   u 
         aug uuagucagc  ucgg uggU UGUUUUAGC  G AGCUAUG    ugu a
         ||| |||||||||  |||| |||| |||||||||  | |||||||    |||  
         uac agucaguug  agcu acca acaaaaucg  c ucgauac    acg u
---------   -         --    a    u         uu a       uuau   u 

>rno-mir-421 (-33.90)   [rno-miR-421:10-30]

    cu      -    UUA            a   aaa 
caca  guaGGC CUCA   AAUGUUUGUUGa uga   a
||||  |||||| ||||   |||||||||||| |||   a
gugu  cguccg gggu   uuacagacaacu acu   u
    cu      c    uaa            -   aag 

>ath-MIR413 (-36.11)   [ath-miR413:6-26]

   cc        UCUUG       Cau    uaa    aggaaccaug     g  --  ag 
gau  AUAGUUUC     UUCUGCA   ccac   cuuc          uccca uu  uc  g
|||  ||||||||     |||||||   ||||   ||||          ||||| ||  ||   
cug  uaucaagg     aagacgu   ggug   gaag          agggu aa  ag  u
   cu        --uca       auc    uua    -guaaacaaa     g  cu  au 

>ath-MIR414 (-23.36)   [ath-miR414:25-45]

uca   uua   uc   a        ---A     A  -   A  G    - aucauc 
   uca   uca  auc ucauauUC    UCUUC UC AUC UC UCAu c      a
   |||   |||  ||| ||||||||    ||||| || ||| || |||| |      u
   agu   agu  uag aguaugag    agaag ag uag ag agua g      c
-ag   -ug   -u   -        agug     -  a   a  -    u cuacua 

>ath-MIR415 (-27.00)   [ath-miR415:3-23]

   AC     A     --       auauucucugucuuuuuuuguggcaaaagu 
agA  AGAGC GAAAC  AGAACAU                              a
|||  ||||| |||||  |||||||                               
ucu  ucucg uuuug  ucuugua                              a
   cu     a     gu       agcuaccauuuucucaacagaagagcggua 

>ath-MIR416 (-27.90)   [ath-miR416:57-77]

   aac     cc   uu             -gcg  -g      
cga   ugaac  ggu  guacguauggacc    uc  uugga 
|||   |||||  |||  |||||||||||||    ||  |||| a
gcu   ACUUG  UCA  CAUGCAUGCUUGG    ag  aaccu 
   ---     --   --             acca  aa      

>ath-MIR417 (-27.80)   [ath-miR417:78-98]

        u   -aa  -gg  aa    -cg      uuu           uc  cuu   ga 
aaauauau caa   gu   uc  aaca   ucacua   ccuuuauguuu  cc   auu  u
|||||||| |||   ||   ||  ||||   ||||||   |||||||||||  ||   |||   
uuuauaua guu   ua   AG  UUGU   AGUGAU   GGAAGuacaaa  gg   uaa  g
        -   gua  aua  -C    UUA      ---           uu  ---   ag 

>ath-MIR418 (-9.60)   [ath-miR418:48-68]

     au    --a   -ua    aaaa   aaa   ga 
uuuaa  uuag   auc   gcgu    aga   ucc  a
|||||  ||||   |||   ||||    |||   |||   
agauu  AGUC   UAG   UGUA    Ucu   agg  u
     CC    AAG   UAG    ---A   -ca   ac 

>ath-MIR419 (-28.80)   [ath-miR419:4-24]

aaaUUA   A       G     G  ---auua        g    guc      u 
      UGA UGCUGAG AUGUU uu       cgagcaau agau   uuuuuu a
      ||| ||||||| ||||| ||       |||||||| ||||   ||||||  
      acu acgauuc uacag ag       guucguug uuua   aaaaaa a
-uuuaa   -       -     g  aacguuc        g    --a      a 

>ath-MIR420 (-11.41)   [ath-miR420:4-24]

uu       --AAUCAC      G  aaaau    uacu   cuaucaac 
  cUAAACU        GGAAAU CA     ugga    aca        u
  |||||||        |||||| ||     ||||    |||         
  gauuuga        ccuuua gu     auuu    ugu        u
uu       guaauuua      a  gcucu    cucu   uuucuuuu 

>osa-MIR413 (-19.80)   [osa-miR413:5-25]

ac g  AG    AC    UC     auguggaaaacaguuagcacucuaucugagu 
  g CU  UUUC  UUGU  UGCAC                               c
  | ||  ||||  ||||  |||||                                
  c ga  gaag  aaca  acgug                               g
ua a  cu    -a    uu     aaaauaaaaagacauuauuacgaacccuaau 

>osa-MIR414 (-46.50)   [osa-miR414:14-34]

      g  g   U --A     A  AU A  G     g augaaa    ca    a 
guugcc cu ccg C   UCCUC UC  C UC UCCuu c      ccgc  gcaa u
|||||| || ||| |   ||||| ||  | || ||||| |      ||||  ||||  
cggcgg ga ggc g   agggg ag  g ag gggag g      ggcg  cguu c
      g  -   u ggg     g  gg a  g     g -----g    --    c 

>osa-MIR415 (-38.70)   [osa-miR415:21-41]

------------agaga    -      g   aAA   AAC   A  AGAG     guguauacacaacacugcaacuauc 
                 guuu uacaga cag   CAG   AGA GC    CAGcu                         c
                 |||| |||||| |||   |||   ||| ||    |||||                         c
                 cgaa augucu guc   guu   ucu cg    gucga                         u
gaacuucgaaaacgaaa    c      -   --g   -cc   -  ---a     ccaaagacgaaacagggagucacua 

>osa-MIR416 (-27.00)   [osa-miR416:87-107]

      g   ------       gaa    u    --     uac   gg  g   a    
gaugag agu      augaaua   agaa uaga  aaagc   ggu  uu uug gca 
|||||| |||      |||||||   |||| ||||  |||||   |||  || ||| || g
cuACUU UCA      UGCUUGU   ucuu gucu  uuucg   uca  aa aac cgc 
      G   CAUGCC       --g    u    cg     -uc   aa  a   -    

>osa-MIR417 (-11.50)   [osa-miR417:44-64]

uu   u         ---a    uuaa   ucuu 
  ugg acaaauuug    auuc    auc    a
  ||| |||||||||    ||||    |||    u
  ACC UGUUUAAGU    UAAG    uag    a
gu   U         GAUG    --ua   uauu 

>osa-MIR418 (-18.10)   [osa-miR418:42-62]

c  u  -  gucu   -auc   --    c           ca 
 gu ag cu    gca    ugc  cauu uuaucaucgca  u
 || || ||    |||    |||  |||| |||||||||||  u
 ca uc ga    ugu    acG  GUAA AGUAGUAGUGU  U
c  c  u  --ac   cuuu   CA    -           AA 

>osa-MIR419 (-16.80)   [osa-miR419:17-37]

ucu   - -ugu      U  UG -AU  UGACGAU  UG      ----u   cuu 
   ucu c    ucucug GA  A   GC       GU  uagaug     gaa   u
   ||| |    |||||| ||  |   ||       ||  ||||||     |||    
   aga g    agaggu cu  u   cg       ua  aucugu     cuu   u
---   u uuau      c  gu guu  ---uaag  gu      ugucu   uuu 

>osa-MIR420 (-29.80)   [osa-miR420:8-28]

u    ---ac           CGG     A   ----u   -a       aaa     ccaa  cu   a  a  c     a 
 ucca     UAAAUUAAUCA   AAAUG Ucu     uga  uuguuaa   uacuu    ug  caa ua uu caaga a
 ||||     |||||||||||   ||||| |||     |||  |||||||   |||||    ||  ||| || || |||||  
 gggu     auuuaauuagu   uuuac aga     auu  aacaauu   augaa    ac  guu au aa guucu a
u    guaua           -aa     c   uuaau   aa       --c     acuc  ag   c  a  a     a 

>ath-MIR426 (-21.70)   [ath-miR426:14-34]

-gaggggggaca      -GGAA  U       A   guaguacuagaauacuugu 
            auUUUU     AU UGUCCUU CGg                   c
            ||||||     || ||||||| |||                    
            uaaaaa     ua acaggaa gcc                   c
cucaaauuaaaa      aggag  u       -   aauaaaguuuagcaguaca 

>osa-MIR426 (-30.90)   [osa-miR426:7-27]

       UUUG    UU GUCC        ag     caaaauuuagugaggcaaugaaugaaaagacaucuagcg 
ucgcauU    GAAG  U    UUACGaaa  gcuag                                       a
|||||||    ||||  |    ||||||||  |||||                                       u
agcguaa    cuuc  a    agugcuuu  cgguu                                       a
       ----    cu --aa        -a     ucaaacuguguaaaaucccaauaguuuaaaauuaaaauc 

>hsa-mir-422a (-40.00)   [hsa-miR-422a:10-31]

-----   --a     AC   A       U    AG    ga    - uc 
     gag   gaagc  UGG CUUAGGG CAGA  GCcu  gucu c  u
     |||   |||||  ||| ||||||| ||||  ||||  |||| |   
     cuc   uuucg  acc gaguccc gucu  cggg  uaga g  g
ggucc   cug     -a   -       u    cu    --    c uc 

>hsa-mir-423 (-48.80)   [hsa-miR-423-5p:17-39] [hsa-miR-423-3p:53-75]

-----auaa       u            -AG   G    A     cua 
         aggaagu aggcUGAGGGGC   AGA CGAG CUUUu   u
         ||||||| ||||||||||||   ||| |||| |||||   u
         uccuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
cgcgcccaa       u            GAG   G    -     ccu 

>hsa-mir-424 (-42.30)   [hsa-miR-424:11-32] [hsa-miR-424*:48-68]

---------------------       a  C      AA             g   u 
                     cgagggg ua AGCAGC  UUCAUGUUUUGAA ugu c
                     ||||||| || ||||||  ||||||||||||| ||| u
                     gcucccc aU UCGUCG  GAGUGCAAAACuu gua a
gggguggaagauggaaggggu       c  A      CG             g   a 

>mmu-mir-425 (-33.80)   [mmu-miR-425:13-35] [mmu-miR-425*:54-74]

    u  u    AAU       U  C     U  ----Ag   g 
aaag gc uugg   GACACGA CA UCCCG UG      ugg c
|||| || ||||   ||||||| || ||||| ||      |||  
uuuc cg gacC   CUGUGCU GU AGGGC Ac      acc a
    u  u    CGC       -  A     U  cgaaga   c 

>hsa-mir-425 (-35.70)   [hsa-miR-425:14-36] [hsa-miR-425*:55-76]

     c  u    AAU       U  C     U  A  -----  g 
gaaag gc uugg   GACACGA CA UCCCG UG gu     gg c
||||| || ||||   ||||||| || ||||| || ||     ||  
cuuuc cg gaCC   CUGUGCU GU AGGGC Ac cg     cc a
     u  u    CGC       -  A     U  -  aagag  c 

>xla-mir-427 (-24.90)   [xla-miR-427:45-66]

   a          --   u  c   ug g cug 
agc cccaaaacgg  ggc cu ucu  u a   a
||| ||||||||||  ||| || |||  | |    
uuG GGGUUUUGUC  UCG GA Aga  a u   a
   C          UU   U  A   gu g auu 

>xla-mir-428 (-23.00)   [xla-miR-428:43-64]

   --gu     u    --     c  gu     ug 
cac    cggcc aacu  ggagc cu  cucau  c
|||    ||||| ||||  ||||| ||  |||||  a
gug    GUUGG UUGA  UCUCG GA  gagug  g
   aguc     C    UC     U  AU     uc 

>xla-mir-429 (-29.70)   [xla-miR-429:43-63]

-      u -          ug       cu   u 
 uggaug c uuaccagaca  guuagau  gga g
 |||||| | ||||||||||  |||||||  |||  
 accuGC G AAUGGUCUGU  UAAUcug  ucu c
u      C U          CA       --   a 

>xla-mir-19b (-32.80)   [xla-miR-19b:44-66]

  uc u        a  -   -      u    ug  u 
gc  c gucaguuu gc ugg uuugca cagc  gc a
||  | |||||||| || ||| |||||| ||||  ||  
cg  g cAGUCAAA CG ACC AAACGU GUcg  ug c
  gu u        A  U   U      -    --  u 

>xla-mir-20 (-29.40)   [xla-miR-20:8-30]

-     -ucCA           G     G   ---u  u 
 gcagu     AAGUGCUCAUA UGCAG UAG    ug a
 |||||     ||||||||||| ||||| |||    ||  
 cguca     uucacggguau auguc auc    ac u
u     ugaca           a     -   uugu  u 

>xla-mir-18 (-33.40)   [xla-miR-18:9-31]

          --   U    C   U     UA   a aua 
ccuuguguUA  AGG GCAU UAG GCAGU  Gug c   g
||||||||||  ||| |||| ||| |||||  ||| |    
gggacacggu  ucc cgua auc cguca  uac g   c
          uu   u    a   c     uc   - aug 

>xla-mir-133a (-34.70)   [xla-miR-133a:53-74]

      uu g   a       aa  u  a        accuc 
cagugc  u cua agcuggu  aa gg accaaauc     u
||||||  | ||| |||||||  || || ||||||||      
guuacg  a gaU UCGACCA  UU CC UGGUUuag     u
      uu g   G       AC  C  C        guaac 

>zma-MIR156d (-65.30)   [zma-miR156d:16-35] [zma-miR156d*:80-101]

a    c        ------         -    -        a     -c    aacg      
 ggcu ucgagaga      uUGACAGAA GAGA GUGAGCAC cggcg  gacg    acaua 
 |||| ||||||||      ||||||||| |||| |||||||| |||||  ||||    |||| g
 ucgg agcucucu      GACUGUCUU CUCU CACUCGug gccgc  cugc    uguac 
-    u        uucucC         U    U        c     uc    cgua      

>zma-MIR156f (-80.80)   [zma-miR156f:21-40] [zma-miR156f*:131-152]

u  c  cu   u  u u           -    -           u    c  a    aucuauauacggcugccccaaagcgacg 
 gg ug  aga gg g ggcUGACAGAA GAGA GUGAGCACgca cggc ag cugc                            g
 || ||  ||| || | ||||||||||| |||| ||||||||||| |||| || ||||                             
 cc ac  ucu uc c uCGACUGUCUU CUCU CACUCGugcgu gucg uc gacg                            a
u  u  --   c  u -           U    U           u    -  -    cggauccggauccgauccguagguagcu 

>zma-MIR156g (-68.50)   [zma-miR156g:4-23] [zma-miR156g*:99-120]

           -    -           u    cagacugcaucuauauacggcugcucc 
ggcUGACAGAA GAGA GUGAGCACgca cggc                           u
||||||||||| |||| ||||||||||| ||||                           g
uCGACUGUCUU CUCU CACUCGugcgu gucg                           g
           U    U           u    ucgacgcggaaccguagauagguaagc 

>zma-MIR156b (-58.70)   [zma-miR156b:21-40] [zma-miR156b*:86-106]

     a    uu   ag u        -    A        a      gguu     c    a 
agaug guuu  uga  g uUGACAGA AGAG GUGAGCAC cacggu    ucuua caug g
||||| ||||  |||  | |||||||| |||| |||||||| ||||||    ||||| |||| u
ucuac cgaa  acu  c GACUGUCU UCUC CACUCGug gugucg    aggau guac g
     c    cu   ca U        A    C        c      ----     c    u 

>zma-MIR156c (-68.10)   [zma-miR156c:21-40]

          agg   aa         -     -        a      gccu   uu      uguauga  g 
gguggaggag   uga  gcUGACAGA AGAGA GUGAGCAC cauggu    uuc  gcauga       uc a
||||||||||   |||  ||||||||| ||||| |||||||| ||||||    |||  ||||||       ||  
cuaucuccuc   auu  cgacuguuu ucucu cacucgug guaucg    aag  cguacu       ag g
          aag   ac         c     u        c      ----   cu      -----ug  a 

>zma-MIR156e (-78.80)   [zma-miR156e:20-39] [zma-miR156e*:87-108]

c  - c   c c  gc    -       -    -         a     ggu          cggc 
 cg g ggg g gc  gcgg UGACAGA AGAG AGUGAGCAC cggcc   gugacggcac    g
 || | ||| | ||  |||| ||||||| |||| ||||||||| |||||   ||||||||||     
 gc c ccc c cg  cgcC ACUGUCU UCUC UCACUCGug gccgg   cgcugccgug    c
-  a u   a a  gu    U       C    G         c     ---          uagg 

>zma-MIR156a (-79.90)   [zma-miR156a:18-37] [zma-miR156a*:114-135]

u    ucc ug    ----         -     -        a      g   a        ---a   -  c   au     
 ucgu   g  gcua    acUGACAGA AGAGA GUGAGCAC cagcgg cag cugcaucg    ucg au ugc  ccga 
 ||||   |  ||||    ||||||||| ||||| |||||||| |||||| ||| ||||||||    ||| || |||  ||| g
 ggca   c  cgau    UGACUGUCU UCUCU CACUCGug gucguc guc gacguagu    agc ug acg  ggca 
c    --u gu    cucc         C     U        c      -   -        agua   a  c   -c     

>zma-MIR156h (-80.00)   [zma-miR156h:20-39] [zma-miR156h*:78-99]

c       c  g  c    -        -   -         a     gggc        a 
 gggcucg gc cg gcgg UGACAGAA GAG AGUGAGCAC cggcc    gugacggc c
 ||||||| || || |||| |||||||| ||| ||||||||| |||||    ||||||||  
 uccgggc ug gu cgcC ACUGUCUU CUC UCACUCGug gccgg    cgcugccg g
c       c  -  -    U        U   G         c     ----        u 

>zma-MIR156i (-69.70)   [zma-miR156i:13-32] [zma-miR156i*:80-101]

c    c   -------c         -    -         a  g   g cgga         g 
 gcgg ggg        ggUGACAGA AGAG AGUGAGCAC cg ccg g    acggcaccg c
 |||| |||        ||||||||| |||| ||||||||| || ||| |    ||||||||| g
 cgcc ccc        CUACUGUCU UCUC UCACUCGug gc ggc c    ugccguggu g
u    -   ucucucac         A    G         c  a   g ----         a 

>zma-MIR160a (-57.20)   [zma-miR160a:10-30] [zma-miR160a*:77-97]

u  ug       C       C          a   gu    cc     caga 
 ug  ugcgUGC UGGCUCC UGUAUGCCAc cau  agcg  caacc    u
 ||  ||||||| ||||||| |||||||||| |||  ||||  |||||     
 ac  acGUACG ACCGGGG ACGUGCGgug gug  ucgu  guugg    g
u  cu       A       A          g   --    cc     aauy 

>zma-MIR160c (-51.70)   [zma-miR160c:7-27] [zma-miR160c*:76-96]

a        C    U  C         cu     agagcaacgacagcu 
 ggaugUGC UGGC CC UGUAUGCCA  caucu               u
 |||||||| |||| || |||||||||  |||||                
 ucuAUACG ACCG GG ACGUGCGgu  guaga               g
c        A    U  U         ag     auauccguugggaug 

>zma-MIR160d (-71.59)   [zma-miR160d:21-41] [zma-miR160d*:105-125]

-  cc     cgg     -a     C       C         cu    -   cu      --ucaucau   u 
 gg  agggg   gaucg  uaUGC UGGCUCC UGUAUGCCA  cgca ugg  gccaac         gca a
 ||  |||||   |||||  ||||| ||||||| |||||||||  |||| |||  ||||||         ||| c
 cc  uccuc   cuagc  GUACG ACCGAGG GCGUGCGgu  gcgu acc  cgguug         cgu a
u  --     -ua     ca     A       U         ag    c   -u      cugaucgau   c 

>zma-MIR160b (-64.31)   [zma-miR160b:21-41] [zma-miR160b*:83-103]

c    --    cg   cg       C       C        Acacauguagcca     ug    ga 
 gauc  ggcu  ugu  ugugUGC UGGCUCC UGUAUGCC             acccg  gcgu  u
 ||||  ||||  |||  ||||||| ||||||| ||||||||             |||||  ||||   
 cuag  ccgg  aca  acGUACG ACCGAGG ACGUGCGg             ugggu  cgua  u
a    ua    --   au       A       A        -------------     gu    gg 

>zma-MIR164a (-70.80)   [zma-miR164a:19-39] [zma-miR164a*:116-136]

c     c       a  c        C           A    cauaccauauagcuagacgauguucucucucg 
 aguga aaggacc cg UGGAGAAG AGGGCACGUGC ugcg                                c
 ||||| ||||||| || |||||||| ||||||||||| ||||                                 
 ucacu uuucugg gC ACCUCUUC UCUUGUGCACg acgc                                u
u     c       a  U        C           c    auggguagguauguacuucgaaccagcucgcc 

>zma-MIR164d (-106.20)   [zma-miR164d:20-40] [zma-miR164d*:178-197]

u            -  acgc        C   G       A     auacgccauucucgaucucuccucuccaccacuacugcaucuagcuaucuccauggaugga 
 gagugagaagga cc    UGGAGAAG AGG CACGUGC ugcac                                                             u
 |||||||||||| ||    |||||||| ||| ||||||| |||||                                                             g
 uucacucuuucu gg    ACCUCUUC UCU GUGCACg acgug                                                             u
c            u  cacU        C   G       c     ucggucguacguacucgagcgaucgaauaacgaagaggcuagcuaggucaggcucgaugca 

>zma-MIR164b (-72.30)   [zma-miR164b:21-41] [zma-miR164b*:93-112]

u       ggc     g           CA        G  -uu        ---aug     g g 
 agacggu   ugugc uggUGGAGAAG  GGGCACGU CA   accaucca      ccgcc g u
 |||||||   ||||| |||||||||||  |||||||| ||   ||||||||      ||||| | g
 ucuguca   gcacg gCCACCUCUUC  CCCGUGUA gu   ugguaggu      ggugg u g
u       --a     a           UA        -  ucu        agguaa     g g 

>zma-MIR164c (-180.30)   [zma-miR164c:18-38] [zma-miR164c*:235-255]

u         c  g           C             u uu  c    -          u   agcggccggcggcccggcucucgcagucacgcguacgucgccugagcggcgcgcgcgagagagagagaca 
 ggcgaggug gc cggUGGAGAAG AGGGCACGUGCAu c  uc gucg ccggccggcu ggc                                                                      c
 ||||||||| || ||||||||||| ||||||||||||| |  || |||| |||||||||| |||                                                                      g
 ccgcuccgc cg gCUACCUCUUC UCCCGUGUACgug g  ag uagc ggccggccgg ccg                                                                      g
u         a  g           U             c -u  c    c          -   accgaccgaccgacccaaagucuucgaucgacgacguggacguggucaaucggcgcggccgcugcuggac 

>zma-MIR169a (-72.60)   [zma-miR169a:21-41] [zma-miR169a*:92-112]

    cu    ga        C         UG         ucgaugugacgccucuugaucuc 
uagg  cggg  cuauggug AGCCAAGGA  ACUUGCCGA                       g
||||  ||||  |||||||| |||||||||  |||||||||                        
gucc  gucc  ggugccAC UCGGUUCUU  UGAACGGcu                       u
    uc    uc        A         GU         acuagccgcugcuagacugcugc 

>zma-MIR169b (-82.20)   [zma-miR169b:21-41] [zma-miR169b*:118-138]

    cu    ga        C         UG          cuaucgucgaucaacgagcgacgccucugaugucu 
uagg  cggg  cuacggug AGCCAAGGA  ACUUGCCGAu                                   g
||||  ||||  |||||||| |||||||||  ||||||||||                                    
gucc  gucc  ggugccAC UCGGUUCUU  UGAACGGcua                                   a
    uc    uc        A         GU          ucuacuacuaccagacugcugcuaucuacagcucu 

>zma-MIR167a (-88.20)   [zma-miR167a:17-37] [zma-miR167a*:151-172]

u     -----  c   u      A    C  -            uc       guu     cauauuagc     uccac      -      u      -    
 gcucu     ug gaa gagUGA GCUG CA GCAUGAUCUAgc  ugauuug   ggcac         aggcg     gcacag cuagac agagug gcc 
 |||||     || ||| |||||| |||| || ||||||||||||  |||||||   |||||         |||||     |||||| |||||| |||||| || u
 cgggg     ac cuu cUUACU CGAC GU CGUACUAGauug  gcuaaac   ccgug         uucgc     uguguc ggucug ucucgc cgc 
-     ucuua  a   c      C    A  A            uu       -gu     --------u     ---uc      u      c      g    

>zma-MIR167b (-71.70)   [zma-miR167b:19-39] [zma-miR167b*:88-110]

a         -au              - -              gacgg   ug   u  -u   gc 
 gugcccaag   aaagggUGAAGCUG C CAGCAUGAUCUAac     cau  cuc gc  gcu  a
 |||||||||   |||||||||||||| | ||||||||||||||     |||  ||| ||  |||  g
 cacggguuu   uuucUCACUUUGAC G GUCGUACUAGauug     gua  gag cg  cgg  u
a         ccc              A U              -----   gu   -  uu   ag 

>zma-MIR167d (-76.20)   [zma-miR167d:17-37] [zma-miR167d*:93-115]

u      ----     c      A     --              ucuga         cgaaaa     a 
 gcccaa    gggaa gagUGA GCUGC  CAGCAUGAUCUAgc     gugaucacc      agaac a
 ||||||    ||||| |||||| |||||  ||||||||||||||     |||||||||      |||||  
 cggguu    cccuu uUCACU CGACG  GUCGUACUGGaucg     uacuggugg      ucuug u
a      gcug     c      C     UC              uuccg         -----a     a 

>zma-MIR167c (-80.10)   [zma-miR167c:17-37] [zma-miR167c*:92-114]

u      ----     c      A       --            uc  a        -g    gaga 
 gcccaa    gggaa gagUGA GCUGCCA  GCAUGAUCUAgc  gg gugaucac  cgag    a
 ||||||    ||||| |||||| |||||||  ||||||||||||  || ||||||||  ||||    c
 cggguu    cccuu uUCACU CGACGGU  CGUACUAGaucg  cc uacuggug  gcuc    a
a      ccug     c      C       GU            uu  g        ga    gaua 

>zma-MIR160e (-60.80)   [zma-miR160e:9-29]

a   aa     C    U  C         cu    -        ac 
 ggg  uaUGC UGGC CC UGUAUGCCA  cgca cggcuacc  a
 |||  ||||| |||| || |||||||||  |||| ||||||||  c
 ccc  guacg accg gg gcgugcggu  gcgu gccggugg  c
c   cg     a    u  a         cg    c        cc 

>zma-MIR166a (-76.13)   [zma-miR166a*:6-26] [zma-miR166a:189-209]

-  a        UU      CU    Gc gc      -  -    u   uu   uagucucucuucucuccuagcagcuacucuucgcuuccuacuccuaucucgau 
 ug ggGGAAUG  GUCUGG  CGGG  c  cgccgc cg cucc ucc  cuc                                                     c
 || ||||||||  ||||||  ||||  |  |||||| || |||| |||  |||                                                     c
 ac CCCCUUAC  CGGACC  GCUc  g  guggug gc gagg agg  gag                                                     c
a  c        UU      AG    ua au      a  a    c   -c   ccagagcuagguucucuccccccuucuccuucuucuucuucuucuucuucucu 

>zma-MIR162 (-55.70)   [zma-miR162*:3-23] [zma-miR162:110-129]

    GC    U            uc     u  c    gcugguccggccgggaguggugguuc 
cuGG  GCAG GGUUUAUCGAUC  uuccu gc uugu                          a
||||  |||| ||||||||||||  ||||| || ||||                          a
gACC  CGUC CCAAAUAGCUgg  aaggg cg aaca                          g
    UA    U            cu     -  c    aacgcucgacgacguuguuauuuugc 

>zma-MIR166h (-48.40)   [zma-miR166h*:3-23] [zma-miR166h:56-75]

         C   C       ACg    -a    u  ug 
ggGGAAUGA GUC GGUCCGA   agcc  cggc gc  c
||||||||| ||| |||||||   ||||  |||| ||   
cCCCUUACU CGG CCAGGCU   ucgg  gccg cg  u
         U   A       ---    gc    c  cg 

>zma-MIR166e (-42.20)   [zma-miR166e:67-86]

        uu      cu      --   ga   auac     u 
ggggaaug  gucugg  cgaggu  gca  aac    agauc c
||||||||  ||||||  ||||||  |||  |||    ||||| a
cCCCUUAC  CGGACC  GCUcua  ugu  uug    ucugg u
        UU      AG      gc   uc   --ga     c 

>zma-MIR166i (-53.10)   [zma-miR166i*:3-23] [zma-miR166i:63-82]

        UC      - G         a  a      gugc 
ggGGAAUG  GUCUGG C CGAGAccgu cc gacgac    u
||||||||  |||||| | ||||||||| || ||||||    c
cCCCUUAC  CGGACC G GCUcuggca gg cugcug    u
        UU      A -         -  -      gcuc 

>zma-MIR166f (-48.40)   [zma-miR166f:58-77]

         c   c       aca    a    u cu    
ggggaauga guc gguccga   agcc cggc g  gcu 
||||||||| ||| |||||||   |||| |||| |  || g
cCCCUUACU CGG CCAGGCU   ucgg gccg c  cgc 
         U   A       ---    c    c au    

>zma-MIR166g (-62.20)   [zma-miR166g*:3-23] [zma-miR166g:106-125]

        UU        G       aa    rcgaauua     c    cc     a    - aua 
ggGGAAUG  GUCUGGUU GAGAccu  cacc        aucau caug  augga gcag c   u
||||||||  |||||||| |||||||  ||||        ||||| ||||  ||||| |||| |    
cCCCUUAC  CGGACCAG CUuugga  gugg        uagua guac  uaucu cguc g   g
        UU        G       ag    --------     c    -c     a    c ccc 

>zma-MIR166b (-48.44)   [zma-miR166b*:3-23] [zma-miR166b:96-115]

gu      UU         A        cuwucc          ----------ug uc    c 
  GGAAUG  GUCUGGUUC AGGucuug      gauuugagga            a  caug u
  ||||||  ||||||||| ||||||||      ||||||||||            |  ||||  
  CCUUAC  CGGACCAGG Ucuagaac      cuagacuccu            u  guac u
cC      UU         C        ----au          uguuuuuuuuga gu    g 

>zma-MIR166c (-44.60)   [zma-miR166c*:3-23] [zma-miR166c:72-91]

        UU      CU      --    a   -acgca        
ggGGAAUG  GUCUGG  CGAGGu  gcag aac      gaucuca 
||||||||  ||||||  ||||||  |||| |||      |||||| u
cCCCUUAC  CGGACC  GCUcua  uguu uug      cuggagc 
        UU      AG      gu    g   guucug        

>zma-MIR166d (-41.16)   [zma-miR166d*:3-23] [zma-miR166d:84-103]

gu      UU         A      uu   uuugu      ---ucugug   a 
  GGAAUG  GUCUGGUUC AGGucu  ugc     gaucca         uag g
  ||||||  ||||||||| ||||||  |||     ||||||         ||| c
  CCUUAC  CGGACCAGG Ucuaga  acg     cuaggu         auc u
cC      UU         C      --   ----u      uccuuauga   u 

>zma-MIR171a (-42.20)   [zma-miR171a*:3-23] [zma-miR171a:79-98]

          A             gauguauuuuucuuauauauaaau 
gaUAUUGGCG GGUUCAAUCAGAu                        u
|||||||||| |||||||||||||                        u
cUAUAACCGC CCGAGUUAGUcug                        g
          G             ugaccuaaguguggaaguacguac 

>zma-MIR171b (-47.50)   [zma-miR171b*:4-23] [zma-miR171b:65-84]

  g                       a  cuu c     agg 
cg GAUAUUGGCGCGGUUCAAUCaga ag   g gcucc   c
|| ||||||||||||||||||||||| ||   | |||||    
gC CUAUAACCGUGCCGAGUUaguuu uc   c cgggg   c
  A                       c  -ac u     agc 

>zma-MIR172a (-37.30)   [zma-miR172a:63-82]

gc ug               a  acc   -  a      cc 
  g  gcaucaucaagauuc ca   cau ca uccgaa  a
  |  ||||||||||||||| ||   ||| || ||||||  c
  C  CGUAGUAGUUCUAAG gu   gua gu agguuu  u
uA GU               A  -ay   c  a      ag 

>zma-MIR172d (-34.60)   [zma-miR172d*:4-23] [zma-miR172d:54-73]

        C           A    - -c  -  u g 
gugCAGCA CAUCAAGAUUC CAuc c  ca gc c a
|||||||| ||||||||||| |||| |  || || | u
uACGUCGU GUAGUUCUAAG guag g  gu cg g c
        A           A    a ua  a  u u 

>zma-MIR172b (-56.42)   [zma-miR172b*:4-23] [zma-miR172b:106-125]

        C           A    guccaacucaug       c          cuu  aug     u 
gugCAGCA CAUCAAGAUUC CAuc            caucaug auauaugcau   ca   augcg g
|||||||| ||||||||||| ||||            ||||||| ||||||||||   ||   ||||| c
uACGUCGU GUAGUUCUAAG guag            guaguau uauauaugug   gu   uacgc c
        A           A    -----------a       a          --u  --g     u 

>zma-MIR172c (-53.90)   [zma-miR172c*:4-23] [zma-miR172c:103-122]

        C  C        A    -  acuc    gcaucuucagugaugcaugcaugcucu 
gugCAGCA CA CAAGAUUC CAuc ca    ucac                           g
|||||||| || |||||||| |||| ||    ||||                            
uACGUCGU GU GUUCUAAG guag gu    agug                           u
        A  A        A    a  ----    uauacguauaucgacgacgcucuguag 

>sbi-MIR166d (-45.50)   [sbi-miR166d:67-86]

        uu      cu      g   g    ug -     u 
ggggaaug  gucugg  cgaggu cag aaca  c agauc c
||||||||  ||||||  |||||| ||| ||||  | ||||| a
cCCCUUAC  CGGACC  GCUcua guu uugu  g ucugg u
        UU      AG      -   g    ua a     c 

>sbi-MIR166c (-54.20)   [sbi-miR166c:74-93]

        uu        g      uaa      gaau   c    ga 
ggggaaug  gucugguc gagacc   caccgc    cau caug  g
||||||||  |||||||| ||||||   ||||||    ||| ||||   
cCCCUUAC  CGGACCAG CUuugg   guggug    gua guac  c
        UU        G      uag      ----   c    ga 

>sbi-MIR166b (-52.30)   [sbi-miR166b:52-71]

         u   c         a    gu  g  g 
ggggaauga guc gguccgaag cgcu  gc gc a
||||||||| ||| ||||||||| ||||  || ||  
cCCCUUACU CGG CCAGGCUuc gcgg  cg cg a
         U   A         g    --  g  a 

>sbi-MIR166a (-47.50)   [sbi-miR166a:88-107]

gu      uu         a        cuugu          -   uuug   a 
  ggaaug  gucugguuc aggucucg     gauuuaagga uga    ugc u
  ||||||  ||||||||| ||||||||     |||||||||| |||    |||  
  CCUUAC  CGGACCAGG Ucuagagu     cuaaguuccu auu    aug g
cC      UU         C        ---au          u   uuua   c 

>sbi-MIR172b (-61.63)   [sbi-miR172b:150-169]

gc ug               a     ugcuugcaaaugcauacaugcaucucugccgccuucuuugccugccauuaauagcagu 
  g  gcaucaucaagauuc cacac                                                          u
  |  ||||||||||||||| |||||                                                           
  C  CGUAGUAGUUCUAAG gugug                                                          u
uA GU               G     uauguguauauauaagugucuccguauauacuacgucgucgucgauuuuguacaucau 

>sbi-MIR172c (-49.80)   [sbi-miR172c:99-118]

        c           a   gguccaacucaugcaucuucagugaugcucaugu 
gugcagca caucaagauuc cau                                  g
|||||||| ||||||||||| |||                                  a
uACGUCGU GUAGUUCUAAG gua                                  u
        A           A   gaguaguguauacguauauaucguugacgcucgg 

>sbi-MIR172a (-47.70)   [sbi-miR172a:82-101]

                    a    cagc     cu ggug      -     ac 
gugcagcaucaucaagauuc cauc    ucauc  c    auaugc uauau  a
|||||||||||||||||||| ||||    |||||  |    |||||| |||||   
uACGUCGUAGUAGUUCUAAG guag    aguag  g    uaugcg auaua  u
                    A    ----     -u ----      u     aa 

>sbi-MIR156a (-51.20)   [sbi-miR156a:1-20]

U       -    -        a     -c     acg      
 GACAGAA GAGA GUGAGCAC cggcg  gacga   gcaua 
 ||||||| |||| |||||||| |||||  |||||   |||| a
 cugucuu cucu cacucgug gccgc  cugcu   uguau 
a       u    u        c     uc     gua      

>sbi-MIR156c (-46.62)   [sbi-miR156c:1-20]

U      -     -        a      gccu   uu      ugaau 
 GACAGA AGAGA GUGAGCAC cauggu    uuc  gcauga     g
 |||||| ||||| |||||||| ||||||    |||  ||||||     a
 cugucu ucucu cacucgug guaucg    aag  cguacu     g
a      c     u        c      ----   cu      uaggu 

>sbi-MIR156b (-54.00)   [sbi-miR156b:1-20]

U      -             a      gguu          a 
 GACAGA AGAGAGUGAGCAC cacggu    ucuuagcaug g
 |||||| ||||||||||||| ||||||    |||||||||| u
 cugucu ucucucacucgug gugucg    aggguuguac g
a      a             c      ----          c 

>sbi-MIR160d (-51.00)   [sbi-miR160d:1-21]

U  C       C         cu   -u   cu    acaacucauacu      u 
 GC UGGCUCC UGUAUGCCA  cgc  uag  gcca            acguug u
 || ||||||| |||||||||  |||  |||  ||||            ||||||  
 cg accgagg gcgugcggu  gcg  auc  cggu            ugcagc a
a  a       a         ag   uc   -u    ------------      a 

>sbi-MIR160a (-44.80)   [sbi-miR160a:1-21]

U  C       C          a   -    cc     caua 
 GC UGGCUCC UGUAUGCCAc cau guag  caacc    u
 || ||||||| |||||||||| ||| ||||  |||||     
 cg accgggg acgugcggug gug cguc  guugg    g
a  a       a          g   u    -c     aauc 

>sbi-MIR160c (-38.50)   [sbi-miR160c:1-21]

U  C    U  C         cu    -   aucaa      c 
 GC UGGC CC UGUAUGCCA  cauc uag     caacua c
 || |||| || |||||||||  |||| |||     ||||||  
 cg accg gg acgugcggu  guag auc     guuggu u
a  a    u  c         ug    u   ----c      a 

>sbi-MIR160b (-43.70)   [sbi-miR160b:1-21]

U  C       C          acauguagcccaacccgu 
 GC UGGCUCC UGUAUGCCAc                  g
 || ||||||| ||||||||||                   
 cg accgagg acgugcggug                  g
a  a       a          ggugucguagguuagugc 

>sbi-MIR160e (-53.90)   [sbi-miR160e:1-21]

U  C    U  C         cu    -        acccca     au 
 GC UGGC CC UGUAUGCCA  cgca cggcuacc      agauc  c
 || |||| || |||||||||  |||| ||||||||      |||||  g
 cg accg gg gcgugcggu  gcgu gccggugg      ucuag  a
a  a    u  a         cg    c        -----c     cu 

>sbi-MIR164 (-63.20)   [sbi-miR164:1-21]

U       CA         CAuu        augccgccaagcucgauccuccucugagcuu 
 GGAGAAG  GGGCACGUG    accaucca                               g
 |||||||  |||||||||    ||||||||                                
 ccucuuc  cccguguac    ugguaggu                               c
a       ua         uucu        aggucgguaccgaccgcucgacuaccucgau 

>sbi-MIR167a (-50.10)   [sbi-miR167a:1-21]

U  A      --             ucuga u       -    aaga 
 GA GCUGCC  AGCAUGAUCUAgc     g gaucacc cgag    a
 || ||||||  |||||||||||||     | ||||||| ||||    c
 cu cgacgg  ucguacuggaucg     c cuggugg gcuu    a
a  c      cg             uuccg u       a    gaua 

>sbi-MIR167b (-89.80)   [sbi-miR167b:1-21]

U       - -              aacg  a    -uc  c         c     -   u   uu   uugucuccauggagaagacagcggcaaagc 
 GAAGCUG C CAGCAUGAUCUAac    gc uugc   cu cguguagcg ccugu gcu gcu  ugc                              u
 ||||||| | ||||||||||||||    || ||||   || ||||||||| ||||| ||| |||  |||                              u
 cuuugac g gucguacuagauug    ug aacg   ga gugcgucgu gggcg cgg cgg  aug                              a
a       a u              guag  -    uuc  a         u     g   u   gu   cuuuucggucguucgauucgcuucguuucg 

>sbi-MIR169b (-52.40)   [sbi-miR169b:1-21]

C         UG          -u   u   u  aua   u   a  ca  a 
 AGCCAAGGA  ACUUGCCGGa  aug gca gc   ugu aca gg  gc u
 |||||||||  ||||||||||  ||| ||| ||   ||| ||| ||  ||  
 ucgguuccu  ugaacggccu  ugu cgu cg   aca ugu cc  cg a
a         gu          cu   c   c  --a   u   c  -a  u 

>sbi-MIR169a (-46.20)   [sbi-miR169a:1-21]

C         UG         u   u     caaacucc       ucu 
 AGCCAAGGA  ACUUGCCGA cga cgaug        ucugaug   g
 |||||||||  ||||||||| ||| |||||        |||||||    
 ucgguucuu  ugaacggcu guu gcuau        agacuac   a
a         gu         -   -     -------u       ucu 

>gga-mir-20b (-34.20)   [gga-miR-20b:11-33]

------          -CA           G     G   c  gg 
      cuagcaguau   AAGUGCUCAUA UGCAG UAG uu  c
      ||||||||||   ||||||||||| ||||| ||| ||  a
      gauugucaug   uucacgggugu auguc auc ag  u
gaaaua          aca           a     -   c  gu 

>hsa-mir-18b (-19.80)   [hsa-miR-18b:6-28] [hsa-miR-18b*:49-70]

ug     --   U    C   U     UA  --g     
  uguUA  AGG GCAU UAG GCAGU  Gu   aagc 
  |||||  ||| |||| ||| |||||  ||   ||| a
  aCGGU  UCC CGUA AUC CGUca  ua   uucg 
--     CU   C    A   C     uc  aga     

>hsa-mir-20b (-29.80)   [hsa-miR-20b:6-28] [hsa-miR-20b*:44-65]

     -CA           G     -GU    uu 
aguac   AAGUGCUCAUA UGCAG   AGuu  g
|||||   ||||||||||| |||||   ||||  g
ucauG   UUCACGGGUAU AUGUC   ucag  c
     ACC           G     Auc    ua 

>oar-mir-431 (-46.90)   [oar-miR-431:13-35]

-----    c      gU          C  U A   AGGccacacu 
     cguc ugcgag  GUCUUGCAGG CG C UGC          g
     |||| ||||||  |||||||||| || | |||           
     gcag acgcuc  cgggacguuc gc g acg          a
acaca    a      ug          u  u g   uugcaaaggc 

>oar-mir-127 (-43.70)   [oar-miR-127:58-80]

------------  -uu   --uc   guc   a   u   g         g  c      --  a 
            gc   uga    acu   ucc gcc gcu aagcucaga gg ucugau  uc g
            ||   |||    |||   ||| ||| ||| ||||||||| || ||||||  || a
            cg   acu    uga   agg ugg CGG UUCGAGUCU CC AGGCUA  ag a
uugggcuuccuu  ucu   ccuc   ---   c   U   -         G  U      cu  a 

>oar-mir-432 (-34.80)   [oar-miR-432:17-39]

gcaugacuccu     U U     UA       G     a   uu   uu 
           ccaag C UGGAG  GGUCAUU GGUGG ucc  uau  c
           ||||| | |||||  ||||||| ||||| |||  |||   
           gguuc g accuc  ucgguag ucacc ggg  gua  c
---------gc     u u     -c       g     -   -u   uc 

>oar-mir-136 (-48.10)   [oar-miR-136:20-42]

ucg   -        g        C     UUU          uuc 
   gau gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
   ||| |||||||| |||||||| |||||   ||||||||||   u
   cua cuugggag cuucugag uaaac   gcuacuaccu   a
-ua   u        a        -     ucu          cgc 

>mmu-mir-431 (-43.70)   [mmu-miR-431:13-33] [mmu-miR-431*:56-77]

-----    c       U          C  U A     ----   aca 
     cguc ugcgagg GUCUUGCAGG CG C UGCAg    gcc   c
     |||| ||||||| |||||||||| || | |||||    |||    
     gcag acgcUCU CGGGACGUUC GC G ACguu    ugg   u
cuaca    a       U          U  U G     gcaa   cag 

>mmu-mir-433 (-45.70)   [mmu-miR-433*:15-36] [mmu-miR-433:67-88]

------------------------ugcccgg      gUA   U           U   --------  g     cu 
                               ggagaa   CGG GAGCCUGUCAU AUU        Ca agagg  a
                               ||||||   ||| ||||||||||| |||        || |||||   
                               ccucuU   GCU CUCGGGUAGUA UAg        gu ucucc  g
cccgacggaaguaccacaccacggcgaugga      GUG   C           C   gaagaguu  g     ua 

>mmu-mir-434 (-38.80)   [mmu-miR-434-5p:23-44] [mmu-miR-434-3p:60-81]

ucgacucug           -a  C    C C      UG      uacu 
         gguuugaacca  aG UCGA U AUGGUU  AACCAu    u
         |||||||||||  || |||| | ||||||  ||||||     
         ccaagcuuggU  UC AGCU A UACCAA  UUggug    a
------cua           CC  -    C C      GU      cuua 

>dre-mir-430a-1 (-32.50)   [dre-miR-430a:61-82]

cu  u  uguu      -auc g      c     -      g   ugg     
  gc ac    gucacu    g ugcccu acaaa ggcacu acu   augc 
  || ||    ||||||    | |||||| ||||| |||||| |||   ||| u
  cg ug    caguga    u AUGGGG UGUUU UCGUGA Ugg   uacg 
au  -  --uc      acuu G      U     A      A   -ug     

>dre-mir-430b-1 (-26.40)   [dre-miR-430b:61-83]

auugauagaaacca  u  g   a          --     u      uuuaa 
              gu ga guc acucuaacuu  uagca cuuucu     g
              || || ||| ||||||||||  ||||| ||||||      
              cg uu uaG UGGGGUUGAA  AUCGU GAAAga     c
--------------  u  g   A          CU     -      ugaaa 

>dre-mir-430c-1 (-23.90)   [dre-miR-430c:60-81]

uucaaucuaaagcac        c        c         gauu  ucc 
               auuaagau acuucaaa aggagcauu    ug   u
               |||||||| |||||||| |||||||||    ||   u
               uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
-------gacaggaa        A        C         --AU  uug 

>sbi-MIR393 (-77.60)   [sbi-miR393:20-40]

-ac    c           a                U        acuccuuccauucuaucaugggug 
   aaug cuggaggaagc UCCAAAGGGAUCGCAU GAUCcguc                        g
   |||| ||||||||||| |||||||||||||||| ||||||||                        u
   uuac gaucuccuucg agguuuuccuagcgua cuaggcag                        c
uca    a           g                -        cccuugcuucaggaacaucugcug 

>sbi-MIR394a (-43.20)   [sbi-miR394a:21-40]

cuuuacaua   - g      -      U C           --uu  ccau  u  ga 
         cug a aguucc UUGGCA U UGUCCACCUCC    gc    cg ca  u
         ||| | |||||| |||||| | |||||||||||    ||    || ||   
         gau u ucgagg aaccgu a acagguggagg    cg    gu gu  a
---ucuccg   g g      u      c u           uuuu  --uu  -  au 

>sbi-MIR395b (-51.00)   [sbi-miR395b:66-86]

guua      g  u c             g               -  a  gu 
    gguuug ug c cuaggaguucucu caagcacuucacgag gc uc  u
    |||||| || | ||||||||||||| ||||||||||||||| || ||  u
    cuaaac ac g gauuCUCAAGGGG GUUUGUGAAGUGuuu cg ag  u
uuua      -  u u             -               u  -  ag 

>sbi-MIR395a (-78.50)   [sbi-miR395a:111-131]

gguug             ug         a     u      g  gca        cccu     a     -c    u 
     guugguugucacc  gaguucucc caaac acuuca ua   acacacac    aguuu augca  cgug u
     |||||||||||||  ||||||||| ||||| |||||| ||   ||||||||    ||||| |||||  ||||  
     cgacuaacggugg  CUCAAGGGG GUUUG UGAAGU au   ugugugug    ucgag ugugu  guac u
-uuaa             gu         -     -      G  aca        ----     g     uu    g 

>sbi-MIR395d (-51.90)   [sbi-miR395d:64-84]

ucaa u ug   u c             g               -  a  u 
    g u  gug c ccaggaguucucu caaacacuucacaaa gc cu u
    | |  ||| | ||||||||||||| ||||||||||||||| || || u
    c a  cac g gguuCUCAAGGGG GUUUGUGAAGUGuuu cg ga u
uuua u gu   c u             -               u  a  u 

>sbi-MIR395e (-50.20)   [sbi-miR395e:66-86]

auua    --       ccc           g               -  a  au 
    gguu  ugguguc   gggaguucucu caagcacuucacgag gc cu  u
    ||||  |||||||   ||||||||||| ||||||||||||||| || ||   
    ccaa  accguag   uuCUCAAGGGG GUUUGUGAAGUGuuu cg ga  u
uuua    uc       ---           -               u  a  gu 

>sbi-MIR396b (-64.90)   [sbi-miR396b:21-41]

aga      -       ga c            C         aucucuaagaggagcagcuug 
   uggccu ucuuugu  u UUCCACAGCUUU UUGAACUGc                     a
   |||||| |||||||  | |||||||||||| |||||||||                     a
   accgga agagacg  a agggugucgaaa aacuugacg                     c
--a      g       uc a            u         uggacgaguacguccaucucu 

>sbi-MIR396a (-52.10)   [sbi-miR396a:21-41]

aca   - c   c    c  c            C         aug  -  u    c  u u  a 
   ugg c cuc uugc gu UUCCACAGCUUU UUGAACUGc   cu gg agug ug g gc u
   ||| | ||| |||| || |||||||||||| |||||||||   || || |||| || | ||  
   acc g gag gacg ua agggugucgaaa aacuugacg   ga cc uuau ac c ug c
--g   a a   a    u  a            u         -ga  a  -    a  - u  c 

>sbi-MIR396c (-45.10)   [sbi-miR396c:21-41]

uucaa  cc   c   gc                   A     ccuccuccuccucucucuuagaaggguagcuuugaac 
     gu  aug cau  cuUUCCACAGCUUUCUUGA CUUcu                                     a
     ||  ||| |||  ||||||||||||||||||| |||||                                     u
     ca  uac gua  gaagggugucgaaagaacu gaaga                                     c
aggaa  -a   a   aa                   g     aaccucucucucucucucucucucucucucucucucu 

>sbi-MIR399a (-69.60)   [sbi-miR399a:97-117]

ugccg    c       ua           gu         aaag   c  c   aa ua     -  a 
     gcgc ggcgaau  cggggcaguuc  cuuuggcac    gca gu cag  c  cucga ug g
     |||| |||||||  |||||||||||  |||||||||    ||| || |||  |  ||||| || g
     cgug ccgcuua  GUCCCGUUAAG  GAAACCGUg    cgu ca guc  g  gaguu ac g
gaaga    c       gc           AG         ----   a  a   aa uc     c  u 

>sbi-MIR399c (-63.00)   [sbi-miR399c:91-111]

caua   u    -au    ua       ca             agaugcaugcagcagaaugcau 
    ugc gagc   gaau  cagggua  ucuccuuuggcac                      a
    ||| ||||   ||||  |||||||  |||||||||||||                      u
    acg cucg   cuua  GUCCCGU  AGAGGAAACCGUg                      a
--ua   u    gau    gc       UA             cgagcugucaaagcguauacgu 

>sbi-MIR399d (-113.30)   [sbi-miR399d:166-186]

gu c      a             -          c       -   u aucgucgucgucaucgacggcugguucuguguucauccggauccaucgugcagc 
  g aggcug agacaguuguagg cagcucuccu uggcagg cgg c                                                      c
  | |||||| ||||||||||||| |||||||||| ||||||| ||| |                                                      g
  c uucgac ucugucagcGUCC GUUGAGAGGA ACCGUcc gcu g                                                      u
-u c      c             C          A       u   - cugcaugcacgcacguauuacguacguacauuggcuuauaaugacguacguacg 

>sbi-MIR399e (-57.80)   [sbi-miR399e:87-107]

acaugc     -  ----      a c   ug        c       aacuuggcuggucgccugg 
      ggggc ca    ugcauu c ggg  ggucuccu uggcagu                   u
      ||||| ||    |||||| | |||  |||||||| |||||||                   c
      cccug gu    acguaa G CCC  UUAGAGGA ACCGUca                   c
------     a  uuug      c A   GU        A       cagacgugcguccauagua 

>sbi-MIR399f (-49.53)   [sbi-miR399f:81-101]

caua       c a     a c    c uu       g          uugaauuuuacuuu    g 
    ugcgagu g ggauu c gggc a  ucuccuu ggcagaguaa              gcug a
    ||||||| | ||||| | |||| |  ||||||| ||||||||||              ||||  
    auguuua c ccuaa G CCCG U  AGAGGAA CCGUcucguu              uggc u
uaua       - a     c A    - UU       A          --------------    c 

>sbi-MIR399b (-59.50)   [sbi-miR399b:82-102]

uagcu      --ga    ca   u           c     --u       g      u au 
     cagggu    gaau  cag gcagcucuccu uggca   gaaggcu agagag c  g
     ||||||    ||||  ||| ||||||||||| |||||   ||||||| |||||| |  a
     gucccg    cuua  GUC CGUCGAGAGGA ACCGU   uuuccgg ucuuuu g  g
--aac      auua    cc   C           A     ccc       -      - ac 

>sbi-MIR399g (-56.30)   [sbi-miR399g:86-106]

ccaga      cu  c   g u      c  c           -au    --aaugu      a 
     ugugca  ug auu c gggcaa uu uccuuuggcag   gcgc       gcuccg c
     ||||||  || ||| | |||||| || |||||||||||   ||||       ||||||  
     acacgu  ac uaa G CCCGUU AA AGGAAACCGUc   cgcg       cggggu c
-accg      cc  u   g C      U  -           auc    ccuucuu      c 

>sbi-MIR156d (-66.90)   [sbi-miR156d:21-41]

-   -acc    gag  a          -A    -          --a   -a   cc       a 
 ugg    ucug   ug gugaUGACAG  AGAG AGAGAGCACA   ccc  gca  agcgagg g
 |||    ||||   || ||||||||||  |||| ||||||||||   |||  |||  ||||||| a
 acc    ggac   gc cgcuacuguc  ucuc ucucucgugu   ggg  cgu  ucgcucc a
a   cacc    --a  -          ac    g          gcc   ag   cu       g 

>sbi-MIR164b (-71.90)   [sbi-miR164b:21-41]

- a        c  a     c        C  G         -  u  u  - ug a 
 g ggggcgag aa ccgug UGGAGAAG AG GCACGUGCU cg cg cg c  c u
 | |||||||| || ||||| |||||||| || ||||||||| || || || |  |  
 c ccccgcuc uu gguac accucuuc uc cgugcacga gc gc gc g  g g
a -        -  c     a        c  g         c  u  u  u gu c 

>sbi-MIR166e (-61.70)   [sbi-miR166e:112-132]

-caa  u  ag     g    u       uu         a      -c  -   c   -ca        u    uu 
    gu ga  guuag uuaa gggguug  gucugguuc aggucg  ca cag aga   aagcccau uugc  a
    || ||  ||||| |||| |||||||  ||||||||| ||||||  || ||| |||   |||||||| ||||  g
    cg cu  cgauc aauu CCCUAAC  CGGACCAGG Ucuagc  gu guu ucu   uuugggua gacg  c
uaua  u  -a     -    U       UU         C      ua  a   a   cua        c    ua 

>sbi-MIR167d (-79.80)   [sbi-miR167d:21-41]

gug        u u     c         -             ----   --g  ga    uauu    a      c 
   gugcaucc c aguag UGAAGCUGC CAGCAUGAUCUGa    uga   gu  gguu    ugcu guuggu a
   |||||||| | ||||| ||||||||| |||||||||||||    |||   ||  ||||    |||| |||||| c
   cacguagg g ucguc acuuugacg gucguacuagacu    acu   ca  ccgg    acga caaucg a
-ua        u c     u         u             agca   aaa  ac    uagu    -      g 

>sbi-MIR167f (-66.44)   [sbi-miR167f:21-41]

uccg    -a   g   u               C         gaaacuag        ccuuuuacugauuuccaucuagccugcaucuaua 
    gugc  cua agg ggaUGAAGCUGCCAG AUGAUCUGa        ugcuugau                                  u
    ||||  ||| ||| ||||||||||||||| |||||||||        ||||||||                                   
    cacg  ggu uuc ucuacuuugacgguc ugcuagacu        gcgaauug                                  a
--aa    ac   a   u               -         -----aga        auaguagucugguacuaaguacguaguuccauau 

>sbi-MIR167g (-66.70)   [sbi-miR167g:21-41]

auu     a  -uua     c         -                  auuucuuuuacu    aa u 
   ugugc cc    agcag UGAAGCUGC CAGCAUGAUCUGaucuua            ggca  c u
   ||||| ||    ||||| ||||||||| ||||||||||||||||||            ||||  |  
   acacg gg    ucguc acuuugacg gucgugcuagacuagaau            ccgu  g c
--g     a  uuaa     c         c                  ------------    -a g 

>sbi-MIR167e (-77.81)   [sbi-miR167e:21-41]

agug    -a    a   u           C              u   uauauau    a  a     -ga     -    gac    a     cg 
    gugc  ccac agu ggUGAAGCUGC AGCAUGAUCUGaug cuu       auua uu ccucu   uuucu cccu   uguu uggau  a
    ||||  |||| ||| ||||||||||| |||||||||||||| |||       |||| || |||||   ||||| ||||   |||| |||||   
    cacg  ggug ucg cuacuuugaug ucguacuggacuac gag       uaau aa ggaga   aagga gggg   auag acuua  u
--ua    ag    g   c           -              -   -------    -  -     aag     a    agu    -     ag 

>sbi-MIR167c (-82.80)   [sbi-miR167c:20-40]

cu   c    -       gu         C                -  --g    -   -    -  c 
  uug uggu gugagag  UGAAGCUGC AGCAUGAUCUGguggc cg   ccgg ccg gcgu cu u
  ||| |||| |||||||  ||||||||| |||||||||||||||| ||   |||| ||| |||| ||  
  aac acca cgcucuc  acuucgacg uuguacuagaccgcug gc   ggcu ggc cgcg ga c
-a   c    a       uc         -                c  aga    a   u    u  a 

>sbi-MIR168 (-65.80)   [sbi-miR168:21-41]

gcc  c  g   c     gc             AU     C   --   -   u 
   gc gc ccg cucgg  UCGCUUGGUGCAG  CGGGA cug  ccg ccg g
   || || ||| |||||  |||||||||||||  ||||| |||  ||| |||  
   cg cg ggc gagcc  agugaaccacguu  gcccu gac  ggc ggc c
-gc  a  a   c     ua             cc     a   ag   a   u 

>sbi-MIR169c (-70.80)   [sbi-miR169c:21-41]

-u          ugc   u   -        A     U       cggccuugcgaguuccgguu 
  ggcgagagcc   cuu ggU AGCCAAGG UGACU GCCUAca                    g
  ||||||||||   ||| ||| |||||||| ||||| |||||||                     
  ccguucucgg   gag ccg ucgguucc acugg cgggugu                    c
gu          --u   u   a        -     -       uuggguugacuugaccggua 

>sbi-MIR169d (-41.60)   [sbi-miR169d:21-41]

uggcgagagccugccuuuggUAG      A     U       uggcauugcgaguuccgguu 
                       CCAAGG UGACU GCCUAca                    g
                       |||||| ||||| |||||||                     
                       gguucc acugg cgggugu                    c
-----------------------      -     -       uugagucgacuugaccggua 

>sbi-MIR169f (-85.60)   [sbi-miR169f:21-41]

-c         acu   cu   -         U    U       gc ----u    u -   - -    -        c 
  gaugagagc   gcu  ggU AGCCAAGGA GACU GCCUGug  c     ccac c cac c ugcg gcaggagg u
  |||||||||   |||  ||| ||||||||| |||| |||||||  |     |||| | ||| | |||| ||||||||  
  cuacucucg   cga  ccg ucgguuccu cuga cggacgc  g     ggug g gug g gcgc cgucuucu c
uc         --g   cu   a         -    -       ua cuguu    u u   u c    g        u 

>sbi-MIR169g (-79.50)   [sbi-miR169g:21-41]

gc        u      a   -         U    U       gccucuuggcuuggcuugagagcuuauuaacuc 
  gauaagag cugccc gaU AGCCAAGGA GACU GCCUGug                                 u
  |||||||| |||||| ||| ||||||||| |||| |||||||                                 g
  cuauucuc ggcggg cug ucgguuccu cuga cggacac                                 u
-u        -      c   a         -    -       uagcuccgguguucuucucguuuaauuugcacg 

>sbi-MIR169i (-84.80)   [sbi-miR169i:21-41]

--    g     ccc    u            U              u   cucuguuggcaauuccuccagccauggagauugcac 
  gaug agagc   cuuu gcUAGCCAAGAA GACUUGCCUAugca gcc                                    a
  |||| |||||   |||| |||||||||||| |||||||||||||| |||                                     
  cuac ucucg   gaga cgaucgguucuu cuggacggguacgu cgg                                    a
ac    -     --u    c            -              -   uguaacguagguaguagauacggcguuuuuaagugg 

>sbi-MIR171b (-76.40)   [sbi-miR171b:93-113]

au     -c  c   c    g                    c      uc       aga  aga g 
  ggccg  cg gcg gacg gguauuggcgcgguucaauu gagagc  gagcccu   cu   c c
  |||||  || ||| |||| |||||||||||||||||||| ||||||  |||||||   ||   | c
  ucggu  gu cgc cugc CUAUAACCGUGCCGAGUUAG cucucg  cucgggg   ga   g a
--     aa  u   c    a                    U      -u       -ga  gag g 

>sbi-MIR171d (-63.22)   [sbi-miR171d:114-134]

-aua      u    g  au         u       c     --    cucuccgauccucagcucguguccauug 
    auggaa agua cu  gauguuggc cggcuca ucaga  ccac                            c
    |||||| |||| ||  ||||||||| ||||||| |||||  ||||                            g
    uaccuu ucau ga  CUAUAACCG GCCGAGU AGUcu  ggug                            a
uaua      c    -  cu         U       U     uu    cuggucgcuguauauauguacuagcuac 

>sbi-MIR171a (-77.50)   [sbi-miR171a:122-142]

uugguu    -     -ag  c                        caucgcccggcaaggugacuuaaauuuugcgcuuuc 
      ggcu gagag   ug gauguuggcaugguucaaucaaau                                    g
      |||| |||||   || ||||||||||||||||||||||||                                     
      ccga cucuu   ac CUAUAACCGUGCCGAGUUAGUuug                                    a
---uau    u     cca  a                        ugccacggaccuuuguggagggacguggagcuagcu 

>sbi-MIR171c (-45.54)   [sbi-miR171c:70-90]

aga   --   c       ca        a             ucauc   agcaaa 
   acg  aga gacaugg  ugguauug cuuggcucaucuc     cac      c
   |||  ||| |||||||  |||||||| |||||||||||||     |||       
   ugc  ucu cuguacu  aCUAUAAC GAGCCGAGUGGAG     gug      u
---   ga   a       uc        C             --ucc   aacacu 

>sbi-MIR172e (-62.50)   [sbi-miR172e:76-96]

u g a    a   uc   a         g             -  -   -  aag   u 
 c g gccg cuc  ugc ggugcagca caucaagguucgc ca gca gc   cga c
 | | |||| |||  ||| ||||||||| ||||||||||||| || ||| ||   |||  
 g c cggc gag  acg cCACGUCGU GUAGUUCUAAGUg gu ugu cg   gcu g
c g -    c   ua   a         A             u  g   g  -ga   a 

>sbi-MIR166f (-62.90)   [sbi-miR166f:100-120]

ccuuggu      ------               uu g    cu   g  a  -  ---cg   --    uu     u 
       cauggg      gguuuguggggaaug  g cugg  cga gc uc cg     ucc  uggc  gcaga c
       ||||||      |||||||||||||||  | ||||  ||| || || ||     |||  ||||  |||||  
       guaccu      ccaaacgCUCCUUAC  C GACC  GCU cg ag gc     agg  aucg  cguuu g
-------      acgugg               UU G    AG   g  g  a  uagaa   cc    uc     u 

>sbi-MIR171e (-55.50)   [sbi-miR171e:85-105]

--    g      gacg      c         u             - u   ugcuuc       u 
  agga gaagaa    acaugg gugguauug uucggcucauguc c ucu      gagucug c
  |||| ||||||    |||||| ||||||||| ||||||||||||| | |||      |||||||  
  ucuu cuucuu    uguacU CACUAUAAC AAGCCGAGUGuag g agg      uuuaggc g
ag    a      ---a      -         C             u u   -----u       u 

>sbi-MIR159 (-96.90)   [sbi-miR159:204-224]

a   a       a   u     u  ag    cuuuu  -u   -    u c   g    u     guuc    uau         ucauguauguguguauguacucuagaggg 
 gcg agcuccu uca uccaa ga  ggcc     ca  ggg uggu c gcu cucg ucaug    ccac   ccuaucuca                             c
 ||| ||||||| ||| ||||| ||  ||||     ||  ||| |||| | ||| |||| |||||    ||||   |||||||||                             c
 cGU UCGAGGG AGU AGGUU cu  ccgg     gu  ccc gcca g cga gagc aguac    ggug   ggauagagu                             c
a   C       A   U     U  cg    ---uc  uc   u    c u   g    c     guuu    uuc         uucugacugcugguguacuuagagaagag 

>sbi-MIR319 (-117.10)   [sbi-miR319:191-210]

    c       ---uu    -----uau  -cc   u   a a    gu           cu     gc     ua        ----   g  g   ac        c  ca   c    aaac   ca  g 
cugc gccaugg     guga        gg   gga gga g gagc  ccuucagucca  caggg  ggugc  gggucgaa    uua cu ccg  ucauucac ca  ugc aagc    ggc  ug a
|||| |||||||     ||||        ||   ||| ||| | ||||  |||||||||||  |||||  |||||  ||||||||    ||| || |||  |||||||| ||  ||| ||||    |||  ||  
gacg cgguacc     cauu        cc   ccu ccu C CUCG  GGAAGUCAGGU  guuuc  ccacg  ucuagcuu    aau ga ggc  aguaagug gu  acg uucg    ucg  gc a
    -       cauuu    uguuaauu  ucc   -   C -    UG           Uc     ua     -c        cgaa   g  g   ga        a  ag   u    ---a   -a  a 

>ame-bantam (-32.60)   [ame-bantam:50-72]

    -----a       cu                 ga    uaga 
ucga      aacgaaa  gguuuucacaaugauuu  caga    u
||||      |||||||  |||||||||||||||||  ||||     
agcu      uuguuUU  UCGAAAGUGUUACUAGA  GUcu    u
    gaaaag       AG                 --    uagc 

>ame-mir-1-1 (-42.30)   [ame-miR-1:52-73]

       augcu            c    uuc     -  g   
ccgggcg     guuccgugcuuc uuac   ccaua gu ga 
|||||||     |||||||||||| ||||   ||||| || | u
ggcccgc     cGAGGUAUGAAG AAUG   GGUau ca cg 
       ---gu            A    UAA     g  g   

>ame-mir-12 (-47.20)   [ame-miR-12:13-35]

                   U   U           ---g  a 
aagacaugggugUGAGUAU ACA CAGGUACUGGU    ug u
||||||||||||||||||| ||| |||||||||||    || a
uucuguacucgcauucaua ugu guucaugacca    ac u
                   u   -           acag  u 

>ame-mir-124 (-30.77)   [ame-miR-124:51-73]

u    cuu            g    cc   ugccaacu 
 gcuc   gcguucacugcg gcuu  aug        u
 ||||   |||||||||||| ||||  |||         
 cgaG   CGUAAGUGGCGC CGGA  Uac        u
g    AAC            A    -A   uuaaaacu 

>ame-mir-125 (-42.00)   [ame-miR-125:24-45]

     --  cu  - g          C  CU    CC   A       --c    c 
guaaa  gc  gc c cgucgccggu CC  GAGA  CUA CUUGUGA   gucg g
|||||  ||  || | |||||||||| ||  ||||  ||| |||||||   ||||  
cguuu  cg  cg g guagcgguua gg  cucu  gau ggacacu   uagc a
     uc  -u  u a          u  -u    ua   c       cua    c 

>ame-mir-133 (-35.40)   [ame-miR-133:57-78]

         g  -            cac  gu     a a   ca 
uaauguuaa cu uagcugguugaa   gg  caaau u ucg  c
||||||||| || ||||||||||||   ||  ||||| | |||   
auuacaguu ga GUCGACCAACUU   CC  GUUua g agu  g
         -  U            -CC  UG     c c   ua 

>ame-mir-184 (-41.70)   [ame-miR-184:56-77]

-uuc   -   aaa c         -      u       -  agaa 
    gug ccc   g cccuuauca uucucc guccggu gu    u
    ||| |||   | ||||||||| |||||| ||||||| ||    u
    cac ggg   c GGGAAUAGU AAGAGG CAGGUca ca    g
aaga   u   agc C         C      -       g  gauu 

>ame-mir-210 (-39.62)   [ame-miR-210:51-71]

u   --     a gc        gc   -         uuaga 
 gga  cccua u  agcugcug  cac ugcacaaga     c
 |||  ||||| |  ||||||||  ||| |||||||||     a
 ccu  ggggu g  UCGGCGAC  GUG GCGUGUUcu     u
a   uu     a uA        -A   U         cagaa 

>ame-mir-219 (-37.93)   [ame-miR-219:20-42]

aa      -  --   ag  aa    U    AA            ucuaaac 
  uugaau gu  cuc  gc  UGAU GUCC  ACGCAAUUCUUG       g
  |||||| ||  |||  ||  |||| ||||  ||||||||||||       g
  aacuua cg  gag  cg  acua cagg  uguguuaagaac       u
-c      g  ug   cu  cg    -    gg            uaaagca 

>ame-mir-263 (-40.19)   [ame-miR-263:13-36]

    u    u    AA       U   AGAA        ggauuua 
agcu ggac cuGU  AUGGCAC GGA    UUCACggg       a
|||| |||| ||||  ||||||| |||    ||||||||        
ucgg ccug gaca  uacugug ccu    aggugccc       g
    -    c    ca       c   --cg        gggcaaa 

>ame-mir-276 (-38.34)   [ame-miR-276:52-73]

u    g  a     c    a     ag         guagug 
 ggua ag uccag agcg gguau  aguuccuac      u
 |||| || ||||| |||| |||||  |||||||||       
 ccgu uc agguU UCGU CCAUA  UCAAGGAUg      u
g    -  -     C    G     CU         aaagac 

>ame-mir-277 (-37.40)   [ame-miR-277:51-73]

     uu    -c           - c         c ggcc 
ggcag  gggg  ucgugccagau g gcguuuaca g    c
|||||  ||||  ||||||||||| | ||||||||| |    u
cuguc  cucu  AGCAUGGUCUA C CGUAAAUgu c    g
     cu    AC           U A         - auaa 

>ame-mir-278 (-44.40)   [ame-miR-278:57-78]

-uca     ag    uc        -    u        --    uu 
    cgagu  ugug  cggaugag gucu caucgacc  guga  u
    |||||  ||||  |||||||| |||| ||||||||  ||||  a
    gcuca  acgU  GCCUGCUU CAGG GUGGCUgg  uacu  a
agga     ga    UU        U    -        aa    uu 

>ame-mir-281 (-41.50)   [ame-miR-281:61-83]

cgac   --a    c c -             -ua     c      aug   au 
    gaa   ggcg g g cuauaaagagagc   uccau gacagu   guu  a
    |||   |||| | | |||||||||||||   ||||| ||||||   |||   
    cuu   ucgu c c gaUGUUUCUCUCG   AGGUA CUGUca   cag  a
gcaa   gua    - a a             UUG     -      ---   au 

>ame-mir-282 (-39.80)   [ame-miR-282:15-42]

    a    aa             CUC       U     G auau 
ggac gagu  cuuGAUUUAGCCU   CUAGGCU UGUCU U    a
|||| ||||  |||||||||||||   ||||||| ||||| |    a
cuug cucg  ggacuggauugga   gauccga acaga g    a
    -    --             uaa       u     g caag 

>ame-mir-2-1 (-46.50)   [ame-miR-2:54-76]

      ugu  ac      -     -             cugau  g 
ggcgcg   gc  cgcuca caaag ugguugugauaug     ac a
||||||   ||  |||||| ||||| |||||||||||||     ||  
cugcgc   cg  gCGAGU GUUUC ACCGACACUAUac     ug g
      -ug  gu      A     G             ----u  c 

>ame-mir-2-2 (-43.10)   [ame-miR-2:50-72]

   -        u c        -             -  aa 
ucg acuguucc c caucagag ugguugugaugug gu  c
||| |||||||| | |||||||| ||||||||||||| ||  u
agc uggcaagg G GUAGUUUC ACCGACACUAUgc ca  u
   g        C A        G             u  gg 

>ame-mir-305 (-37.60)   [ame-miR-305:16-38]

  a   --u -     u     UA     U        CU    aa 
gg ggc   g caugu aAUUG  CUUCA CAGGUGCU  Ggug  c
|| |||   | ||||| |||||  ||||| ||||||||  ||||  u
uc ccg   c guaua uuaac  gaggu guccacgg  ccau  c
  -   ugu a     c     gc     u        -c    ag 

>ame-mir-315 (-32.44)   [ame-miR-315:12-33]

       -a  c  U            A       uugauu 
gcucuuu  ug UU UGAUUGUUGCUC GAAAGCc      a
|||||||  || || |||||||||||| |||||||       
ugggaaa  ac aa acuaauaacggg cuuucgg      u
       gc  u  u            -       uuauag 

>ame-mir-317 (-49.40)   [ame-miR-317:55-79]

             a    -      --   c         g ggg 
gcucucggagaac ggga gccacu  cug guucacucg u   u
||||||||||||| |||| ||||||  ||| ||||||||| |   a
cgggagucuuuUG CUCU UGGUGG  GAC CAAGUgggc a   a
             A    A      UC   A         g agu 

>ame-mir-7 (-37.20)   [ame-miR-7:15-37]

        g   caU   A  C         --      -  ua 
cgagcgcc uug   GGA GA UAGUGAUUU  UGUUGU uc  c
|||||||| |||   ||| || |||||||||  |||||| ||  u
gcucgcgg aac   ccu cu aucacuaag  acaaua ag  u
        a   -au   a  a         ga      u  cu 

>ame-mir-8 (-31.52)   [ame-miR-8:52-74]

     a    uuc       -   g     c      uugaa 
ggagu ucug   acaucuu acc ggcag auuaga     g
||||| ||||   ||||||| ||| ||||| ||||||     u
ccuua ggac   UGUAGAA UGG CUGUC UAAUcu     u
     -    ugC       A   A     A      uccag 

>ame-mir-9a (-38.50)   [ame-miR-9a:15-37]

u    c   ca  uU       U        G     -  auu 
 ggcg gga  uu  CUUUGGU AUCUAGCU UAUGA gu   a
 |||| |||  ||  ||||||| |||||||| ||||| ||    
 ccgc ccu  aa  gaggcca uggaucga auacu ca   u
a    u   cg  uu       u        a     a  gcu 

>ame-mir-9b (-43.10)   [ame-miR-9b:18-40]

uaau   ag   u               C            ccuu 
    gcu  ugc cuuuGCUUUGGUAAU UAGCUUUAUGAu    a
    |||  ||| ||||||||||||||| ||||||||||||    a
    cga  acg gaaaugaaaccauua aucgagauacua    u
guuu   aa   -               u            aaau 

>ame-mir-iab-4 (-34.50)   [ame-miR-iab-4:15-36]

   aaa  c     -            U    -  U  gu u 
gug   cc ccugu ACGUAUACUGAA GUAU CC GA  g a
|||   || ||||| |||||||||||| |||| || ||  | u
cac   gg ggaca ugcauaugacuu caua gg cu  c u
   auc  a     a            c    u  c  gu u 

>aga-bantam (-28.10)   [aga-bantam:70-92]

u  g     g  a   aauc      c         uuuuc     g    a   uu 
 gu uggau aa ugu    acagaa cgguuuuca     gaucu acuu uuu  u
 || ||||| || |||    |||||| |||||||||     ||||| |||| |||  u
 ca acuua uu aca    uguuUU GUCGAAAGU     CUAGA Ugaa aaa  c
g  -     a  a   ----      A         -UUCA     G    c   ca 

>aga-let-7 (-32.60)   [aga-let-7:15-35]

  -      c  u u    G    U           acc   gu 
gc cuacuc cg g UGAG UAGU GGUUGUAUAGU   gug  u
|| |||||| || | |||| |||| |||||||||||   |||  c
ug gauggg gc c auuc aucg cuaacauauca   cau  c
  a      u  u c    a    c           gcu   aa 

>aga-mir-1 (-36.70)   [aga-miR-1:62-83]

gaagcaa    g   aa            c        a    uau   u 
       agcu cga  guuccaugcuuc uugcauuc auag   guu g
       |||| |||  |||||||||||| |||||||| ||||   ||| u
       ucgg guu  cGAGGUAUGAAG AAUGUAAG Uauc   caa a
--cuuga    -   ag            A        G    --c   a 

>aga-mir-10 (-41.70)   [aga-miR-10:22-42]

  cg  uu           cc   -  G    U           -ug   u 
gu  au  auguucuacau  ACC CU UAGA CCGAAUUUGUu   aau u
||  ||  |||||||||||  ||| || |||| |||||||||||   |||  
ca  ug  uacggggugug  ugg ga aucu ggcuuaaacaa   uua a
  au  uu           uu   a  g    u           uaa   u 

>aga-mir-100 (-40.12)   [aga-miR-100:15-36]

   --     u ug   A      G     AA      -  gcacu 
gcc  ccguc g  gaA CCCGUA AUCCG  CUUGUG cu     g
|||  ||||| |  ||| |||||| |||||  |||||| ||     u
cgg  ggcag u  cuu ggguau uaggc  gaacac gg     a
   uu     c gu   a      a     aa      a  ucaac 

>aga-mir-124 (-36.40)   [aga-miR-124:53-75]

     uu   c             ag    g    --u   a 
cguuu  cuc ugguguucacugu  gccu uaug   ucu u
|||||  ||| |||||||||||||  |||| ||||   ||| u
gcaag  gaG ACCGUAAGUGGCG  CGGA AUac   agg g
     -c   A             CA    -    uuu   c 

>aga-mir-125 (-33.80)   [aga-miR-125:30-51]

       u      uuuguau        UC  U    C CU         cuau guu 
uauuguu cguuuu       cugcugau  CC GAGA C  AACUUGUGA    c   g
||||||| ||||||       ||||||||  || |||| |  |||||||||    |    
auggcaa guagag       ggcgauua  gg cucu g  uugaacacu    g   c
       c      -----uu        -u  c    a uu         --uu aaa 

>aga-mir-133 (-13.30)   [aga-miR-133:34-55]

uguugacgcaauauuuucccuuugcgaa    uUUGGUCCCCU   ACCA  U 
                            ugca           UCA    GC G
                            ||||           |||    ||  
                            acgu           agu    cg U
-------------------ugacaacua    ----------u   --ga  a 

>aga-mir-13b (-40.90)   [aga-miR-13b:56-77]

u    ----         -    a            cc    c     a 
 gcuc    guggucagg ucgu aaaaugguugug  gugu gauuu a
 ||||    ||||||||| |||| ||||||||||||  |||| ||||| g
 cgag    caccaguuU AGCA UUUUACCGACAC  UAUa uugaa a
a    uucu         G    G            --    c     a 

>aga-mir-14 (-36.70)   [aga-miR-14:58-78]

  -   a  -a   u       c    uu      u    -   auc 
gc ccg ua  gcc gugggag gaga  aaggcu gcug guu   a
|| ||| ||  ||| ||||||| ||||  |||||| |||| |||   c
cg ggc au  ugg uAUCCUC CUCU  UUCUGA Ugau caa   g
  u   a  ca   c       U    UU      C    g   auu 

>aga-mir-184 (-35.50)   [aga-miR-184:51-71]

    c     aa         -     u  -  ccg   gcu 
ggug acucg  cccuuauca uucuu cg cc   ugu   u
|||| |||||  ||||||||| ||||| || ||   |||    
ccac ugggc  GGGAAUAGU AAGAG GC GG   aca   u
    -     cc         C     -  A  Uca   auc 

>aga-mir-210 (-27.60)   [aga-miR-210:49-69]

         ugc     c  ac   -         uua a 
gaaauucau   agcug ug  cac ugcacaaga   g a
|||||||||   ||||| ||  ||| |||||||||   |  
uuuugggua   UCGGC AC  GUG GCGUGUUcu   c u
         uuA     A  -A   U         cag g 

>aga-mir-219 (-34.30)   [aga-miR-219:11-33]

u    -    c  AU      AA           uccu  -      
 uucu agcu UG  UGUCCA  CGCAAUUCUUG    gu gcugg 
 |||| |||| ||  ||||||  |||||||||||    || |||| u
 aagg ucgg gc  acaggu  guguugagaac    ca cgauu 
-    c    u  cu      ca           ---u  u      

>aga-mir-263 (-34.02)   [aga-miR-263:11-34]

     g   -aU   A  G     GA    UU       uuuuu 
cccug uac   GUA UG CACUG  AGAA  CACggga     u
||||| |||   ||| || |||||  ||||  |||||||     u
gggac aug   cau ac gugau  ucuu  gugcccu     c
     -   auc   -  g     uc    --       uacaa 

>aga-mir-275 (-47.40)   [aga-miR-275:61-83]

u      ucu      a       -ag    a   gg    --    aca 
 gagccg   aaugac cgcgcua   cagg acc  gacu  uggu   c
 ||||||   |||||| |||||||   |||| |||  ||||  ||||    
 cucggc   uuauuG GCGCGAU   GUCC UGG  CUga  aucg   a
a      ---      C       GAA    A   -A    cg    cuu 

>aga-mir-276 (-36.00)   [aga-miR-276-5p:14-33] [aga-miR-276-3p:55-76]

-------   gacug   uc    A     AG           -uaa  g 
       ggu     cca  AGCG GGUAU  AGUUCCUAcgg    uc a
       |||     |||  |||| |||||  |||||||||||    ||  
       ccg     ggu  UCGU CCAUA  UCAAGGAUguu    ag u
ccauuug   --aua   UC    G     CU           ucaa  u 

>aga-mir-277 (-35.30)   [aga-miR-277:59-81]

          -a   gu    -            ----  -g    a 
guuuuggggu  cgu  caga ggugcauuuaca    uc  aacu u
||||||||||  |||  |||| ||||||||||||    ||  |||| u
uaagaccuuA  GCA  GUCU UCACGUAAAUgu    gg  uuga c
          CA   UG    A            uuau  ag    c 

>aga-mir-278 (-40.80)   [aga-miR-278:54-75]

   acgg             u     u  a     guuc   u 
ggu    uacggacggacga agucu ca cgacc    cgu u
|||    ||||||||||||| ||||| || |||||    ||| g
ccg    augUUUGCCUGCU UCAGG GU GCUgg    gca a
   --ga             U     -  G     ---a   c 

>aga-mir-279 (-31.90)   [aga-miR-279:56-77]

u   uau   ug a          a      ugauu     --   a 
 ucc   cag  u aaugggugug aucuag     ucaca  uga u
 |||   |||  | |||||||||| ||||||     |||||  |||  
 agg   guu  A UUACUCACAC UAGAUC     AGUgu  gcu u
a   uuu   gu A          C      -----     ua   u 

>aga-mir-281 (-37.60)   [aga-miR-281:57-79]

--------gca       a  aaa           -ua     c      ag ga 
           aucgaau ug   auaaagagagc   uccgu gacagu  g  u
           ||||||| ||   |||||||||||   ||||| ||||||  |  a
           uagcuua ac   UAUUUCUCUCG   AGGUA CUGUca  u  u
cgugcaacuua       -  aug           UUA     -      cu aa 

>aga-mir-282 (-39.50)   [aga-miR-282:12-39]

-guaa    gcuA           UC      U      Uaca  u 
     caga    AUCUAGCCUCU  UAGGCU UGUCUG    gu u
     ||||    |||||||||||  |||||| ||||||    ||  
     gucu    uggauuggaga  guccga acagac    cg c
cgauc    aaag           cu      u      caaa  u 

>aga-mir-283 (-36.70)   [aga-miR-283:14-34]

u     c       AA           U     Ua  cuau  auc 
 ucgac gaaaggU  AUAUCAGCUGG AAUUC  gg    ca   c
 ||||| |||||||  ||||||||||| |||||  ||    ||    
 agcug cuuuuca  uauagucgacu uuagg  cc    gu   a
g     c       cc           -     gc  -uac  gcu 

>aga-mir-2-1 (-33.20)   [aga-miR-2:58-80]

gcau u    u   -      -         a    ugcacuu     
    g ccug cuc ucaaag uggcuguga augg       ucga 
    | |||| ||| |||||| ||||||||| ||||       ||| u
    c ggau GAG AGUUUC ACCGACACU Uacu       agcc 
---g c    C   U      G         A    ---cuau     

>aga-mir-2-2 (-43.60)   [aga-miR-2:59-81]

uau      --cc        -        c        u     uu   u 
   ugggug    augcauug ucaucaaa uugguugu guagc  gcu u
   ||||||    |||||||| |||||||| |||||||| |||||  ||| g
   auccau    ugcguaaC AGUAGUUU GACCGACA UAUcg  uga a
---      ucac        G        C        C     -u   u 

>aga-mir-305 (-31.30)   [aga-miR-305:15-37]

u      -     cuAU         U  G     CU   ggauu 
 uuguca caugu    UGUACUUCA CA GUGCU  Ggu     u
 |||||| |||||    ||||||||| || |||||  |||      
 aacagu gugua    acaugaggu gu cacgg  cca     g
g      c     ucuc         u  a     -c   aaaga 

>aga-mir-307 (-32.80)   [aga-miR-307:56-75]

----uggac   u  u u  a  a         ccu  g       c     
         uca uc c cg uc cucacucaa   gg ugugaug uuuu 
         ||| || | || || |||||||||   || ||||||| ||| u
         agu ag g gc ag GAGUGAGUU   CC ACACUac aagu 
accaaaauc   u  - c  c  c         CCU  A       u     

>aga-mir-308 (-43.70)   [aga-miR-308:59-80]

-----gcuuc   u                  uc       g    -   cuu 
          ucg gcgauguuucgcaguaua  ccuguga uuug cua   u
          ||| ||||||||||||||||||  ||||||| |||| |||    
          ggc cguuguaGAGUGUCAUAU  GGACACU AAac ggu   u
cggauucauu   -                  GA       -    u   aac 

>aga-mir-315 (-24.20)   [aga-miR-315:8-29]

uauaaa                A      --cg   cg 
      aUUUUGAUUGUUGCUC GAAAGC    ugu  a
      |||||||||||||||| ||||||    |||  u
      ugaaacuaaugacggg cuuucg    acg  u
auaaac                -      cuua   aa 

>aga-mir-317 (-44.04)   [aga-miR-317:56-80]

      u              -  --u    c     -  gcauau 
cgucuc gccacugggauacu cc   ugug ucgcu gu      c
|||||| |||||||||||||| ||   |||| ||||| ||       
guaggg cggUGACUCUAUGG GG   ACAC AGUga ca      g
      c              U  UCU    A     u  aacuua 

>aga-mir-7 (-29.30)   [aga-miR-7:15-37]

      aca     U       U  U     U      u gcuu 
ggcaaa   uugua GGAAGAC AG GAUUU GUUGUu g    a
||||||   ||||| ||||||| || ||||| |||||| |     
ccguuu   aacau cuuucug uc cuaaa uaacaa c    u
      -ga     -       c  u     -      u auag 

>aga-mir-79 (-33.20)   [aga-miR-79:59-80]

gug   -u      cgc       cgc       g     --   aau 
   ccc  uuuguc   gcuuugg   uuuagcu uauga  uag   u
   |||  ||||||   |||||||   ||||||| |||||  |||    
   ggg  aagcag   CGAAACC   AGAUCGA AUacu  auc   u
-ca   uu      aUA       AUU       A     uu   aag 

>aga-mir-8 (-33.10)   [aga-miR-8:54-76]

    guc  uu -       -   g     c      u     a 
gggu   ug  c acaucuu acc ggcag auuaga auguu u
||||   ||  | ||||||| ||| ||||| |||||| |||||  
cccg   gc  g UGUAGAA UGG CUGUC UAAUcu uauag c
    --a  cu C       A   A     A      u     g 

>aga-mir-9a (-28.60)   [aga-miR-9a:11-33]

      -   cU       UAU      G     g   au 
gucaau guu  CUUUGGU   CUAGCU UAUGA ugu  u
|||||| |||  |||||||   |||||| ||||| |||  u
caguua uaa  gaagcca   gaucga auacu gca  u
      a   uu       uac      a     -   aa 

>aga-mir-92a (-42.80)   [aga-miR-92a:51-72]

-     ----         c      cu    a    a    u  u 
 ucagg    acuacgcgu ggccgg  caag gcaa auug gu u
 |||||    ||||||||| ||||||  |||| |||| |||| || c
 agucc    uggugugUA CCGGCC  GUUC CGUU Uaau ca a
a     ggaa         U      CU    A    A    -  u 

>aga-mir-92b (-35.50)   [aga-miR-92b:54-75]

    -ucc  a      a  u          uu     - ugau 
gggc    gg uguagg cg gacaggugca  auuug c    u
||||    || |||||| || ||||||||||  ||||| |    u
cccg    uc aCGUCC GC CUGUUCACGU  UAAac g    u
    ccau  g      G  C          --     u uaac 

>aga-mir-9b (-35.72)   [aga-miR-9b:15-37]

   -   u       AC         UUU          u aaugc 
ugc cac uauuggg  UUUGGUGAU   AGCUGUAUGu g     a
||| ||| |||||||  |||||||||   |||||||||| |     u
aug gug guaaucc  aaaccacua   ucgauauaca c     u
   u   u       aa         -uu          c aaucc 

>aga-mir-9c (-34.40)   [aga-miR-9c:13-34]

u      c  u            CU    G    -      uuu 
 uuccgg ug aUCUUUGGUAUU  AGCU UAGA auguug   u
 |||||| || ||||||||||||  |||| |||| ||||||   c
 aggguc ac uggagaccauga  ucga aucu uauaau   a
a      a  c            uu    a    c      guu 

>aga-mir-iab-4 (-35.20)   [aga-miR-iab-4:15-36]

   c      a  -a            U    -  ---    u 
gug cgcuuc ug  ACGUAUACUGAA GUAU CC   UGAg g
||| |||||| ||  |||||||||||| |||| ||   |||| c
cac gcggag ac  ugcauaugacuu caua gg   auuc u
   a      a  aa            c    u  ccu    a 

>hsa-mir-448 (-51.60)   [hsa-miR-448:71-92]

-----------  c       u a            g   u     ga au    auu  au 
           gc gggaggu g acauccugcaua ugc gccag  a  cccu   uc  a
           || ||||||| | |||||||||||| ||| |||||  |  ||||   ||   
           cg cccucUA C UGUAGGAUGUAU ACG Ugguc  u  gggg   ag  u
acugcuucacc  a       C C            -   U     gg cg    ---  aa 

>mmu-mir-448 (-50.70)   [mmu-miR-448:72-93]

-----------a g       u a            g   u     ga au    a   ca 
            c aggaggu g acauccugcaua ugc gccag  a  cccu cuu  u
            | ||||||| | |||||||||||| ||| |||||  |  |||| |||   
            g uccucUA C UGUAGGAUGUAU ACG Ugguc  u  gggg gaa  a
acugcuucaccc g       C C            -   U     gg cg    a   uc 

>rno-mir-448 (-52.30)   [rno-miR-448:72-93]

-----------a g       u a            g   u     ga au    a   ca 
            c gggaggu g acauccugcaua ugc gccag  a  cccu cuu  u
            | ||||||| | |||||||||||| ||| |||||  |  |||| |||   
            g cccucUA C UGUAGGAUGUAU ACG Ugguc  u  gggg gaa  a
acugcuucaccc g       C C            -   U     gg cg    a   uc 

>cfa-mir-448 (-51.10)   [cfa-miR-448:70-91]

-----------  a       u a            g   u     ga au    auuuu 
           gc gggaggu g acauccugcaua ugc gccag  a  cccu     a
           || ||||||| | |||||||||||| ||| |||||  |  ||||      
           cg cccucUA C UGUAGGAUGUAU ACG Ugguc  u  gggg     u
gcuacuucacc  c       C C            -   U     gg cg    aauca 

>hsa-mir-429 (-40.30)   [hsa-miR-429:51-72]

cgc    c        -uc          ug       cugg 
   cggc gaugggcg   uuaccagaca  guuagac    c
   |||| ||||||||   ||||||||||  |||||||     
   gucg cuaccUGC   AAUGGUCUGU  UAAUcug    c
--c    c        CAA          CA       ucuc 

>mmu-mir-429 (-36.10)   [mmu-miR-429:51-72]

c   cu        u -          ug       cu   u 
 cug  gauggaug c uuaccagaca  guuagau  gga g
 |||  |||||||| | ||||||||||  |||||||  |||  
 ggc  cuaccUGC G AAUGGUCUGU  UAAUcug  ucu c
c   ac        C U          CA       --   a 

>rno-mir-429 (-37.80)   [rno-miR-429:53-74]

u   ugcu        u -          ug       cu   u 
 gcc    gauggaug c uuaccagaca  guuagau  gga g
 |||    |||||||| | ||||||||||  |||||||  |||  
 cgg    cuaccUGC G AAUGGUCUGU  UAAUcug  ucu u
-   -uac        C U          CA       --   a 

>cfa-mir-429 (-37.20)   [cfa-miR-429:53-74]

a   ugcu        u -          cg       - ug   
 gcc    gaugggcg c uuaccagaca  guuagau c  gg 
 |||    |||||||| | ||||||||||  ||||||| |  | u
 cgg    cuacuUGC G AAUGGUCUGU  UAAUcug g  cu 
-   -uac        C U          CA       u gu   

>mmu-mir-365-2 (-41.40)   [mmu-miR-365:68-89]

agagugaucaa g   --       a        ac   c       -----    u   u 
           g aca  gcaagaa aaugaggg  uuu aggggca     gcug guu c
           | |||  ||||||| ||||||||  ||| |||||||     |||| |||  
           c ugu  cguucuu uUAUUCCU  AAA UCCCCGU     ugac cag c
----gaggcua g   ga       g        AA   -       AAUac    u   u 

>cfa-mir-365-2 (-40.10)   [cfa-miR-365:68-89]

agaguguucaa g   --       a        ac   c       -----    u   u 
           g aca  gcaagaa aaugaggg  uuu aggggca     gcug guu u
           | |||  ||||||| ||||||||  ||| |||||||     |||| |||  
           c ugu  cguucuu uUAUUCCU  AAA UCCCCGU     ugac cag c
-----gggcua g   ga       g        AA   -       AAUac    u   u 

>hsa-mir-449a (-39.00)   [hsa-miR-449a:16-37]

-c      ug     c       -    U          ugaa   g 
  ugugug  augag UGGCAGU GUAU GUUAGCUGGU    uau u
  ||||||  ||||| ||||||| |||| ||||||||||    |||  
  auauac  uauuc gucguca cgua caaucggcua    gua g
ac      gu     u       a    -          --cg   a 

>mmu-mir-449a (-44.90)   [mmu-miR-449a:16-37]

-c      ug    cuU      -    U          uga  au 
  ugugug  augg   GGCAGU GUAU GUUAGCUGGU   gu  g
  ||||||  ||||   |||||| |||| ||||||||||   ||   
  acacac  uauc   ucguca cgua caaucgacca   cg  u
ac      gu    cuc      g    -          cgg  ag 

>rno-mir-449a (-47.49)   [rno-miR-449a:16-37]

-c             uU      -    U          ugaguau 
  ugugugcgauggg  GGCAGU GUAU GUUAGCUGGU       g
  |||||||||||||  |||||| |||| ||||||||||        
  auacacguuaucc  ucguca cgua caaucgacca       u
ac             uc      a    -          cggaaaa 

>cfa-mir-449 (-39.00)   [cfa-miR-449:16-37]

-cc     ug     u       -    U          uga  au 
   gugug  auggg UGGCAGU GUAU GUUAGCUGGU   au  a
   |||||  ||||| ||||||| |||| ||||||||||   ||   
   uauac  uauuc aucguca cgua caaucgacua   ua  u
aca     gu     u       a    -          cgg  ag 

>hsa-mir-450a-1 (-35.40)   [hsa-miR-450a:18-39]

--aaac     u       UUU     U              cac 
      gauac aaacugu   UGCGA GUGUUCCUAAUAUg   u
      ||||| |||||||   ||||| ||||||||||||||   a
      cuaug uuugaua   acguu uacaaggguuauau   u
auauaa     u       ugu     u              aaa 

>mmu-mir-450a-1 (-41.40)   [mmu-miR-450a-5p:18-39]

--gaga     u         U     U              ugc 
      gauac gagcuguUU UGCGA GUGUUCCUAAUAUg   u
      ||||| ||||||||| ||||| ||||||||||||||   a
      cugug uucgauaaa acguu uacaaggguuauau   u
acauaa     u         u     u              uaa 

>rno-mir-450a (-39.60)   [rno-miR-450a:17-38]

--gaga    cg         U     U              ugc 
      gaug  gagcugUUU UGCGA GUGUUCCUAAUGug   u
      ||||  ||||||||| ||||| ||||||||||||||   a
      cuac  uuugauaaa acguu uacaaggguuauau   c
acacag    au         u     u              uaa 

>cfa-mir-450a (-35.80)   [cfa-miR-450a:17-38]

--gaaa     u       UUU     U              cag 
      gaugc gaacugU   UGCGA GUGUUCCUAAUAug   u
      ||||| |||||||   ||||| ||||||||||||||   a
      cuaug uuuggua   acguu uacgaggguuauac   u
auauaa     u       cgu     u              aag 

>rno-mir-365 (-38.10)   [rno-miR-365:55-76]

aca       a        ac   c       -----    u   u 
   gcaagaa aaugaggg  uuu aggggca     gcug guu c
   ||||||| ||||||||  ||| |||||||     |||| |||  
   cguucuu uUAUUCCU  AAA UCCCCGU     ugac cag c
--a       g        AA   -       AAUac    u   u 

>cfa-mir-365-1 (-35.40)   [cfa-miR-365:56-77]

acc      aa        ac           ----   -   uuu 
   gcaggg  aaugaggg  uuuugggggca    gau gug   c
   ||||||  ||||||||  |||||||||||    ||| |||   c
   cguucu  uUAUUCCU  AAAAUCCCCGU    cua cac   a
--a      cg        -A           AAUa   u   cuu 

>mghv-mir-M1-1 (-22.40)   [mghv-miR-M1-1:41-62]

ug  c         -  u   ac      c ua 
  gu gaggaagug gg cca  uuuauc c  u
  || ||||||||| || |||  |||||| |   
  ua UUCCUUCAU CC GGU  AGAUag g  a
-a  U         G  -   AA      u ug 

>mghv-mir-M1-2 (-39.30)   [mghv-miR-M1-2:45-66]

-           u u u       a  ga   a 
 gagagggggag g g ggucugu ga  gac u
 ||||||||||| | | ||||||| ||  |||  
 UUCUCCCCCUC C C CCAGACg cu  uug g
U           U - C       g  ag   a 

>mghv-mir-M1-3 (-36.20)   [mghv-miR-M1-3:39-60]

gaagu    -   cu         g     g 
     agcg aac  cugcucacu cccgg c
     |||| |||  ||||||||| ||||| c
     UCGC UUG  GACGAGUGG Gggcc c
---uU    G   AG         A     u 

>mghv-mir-M1-4 (-31.02)   [mghv-miR-M1-4:14-35]

c   cc     --------  UC     --           UC   accuc 
 gag  cugac        ca  GAGGA  GCACGUGUUAU  UAg     u
 |||  |||||        ||  |||||  |||||||||||  |||     c
 cuu  gacug        gu  cuccu  cguguacgaua  auc     u
-   au     aacccuuu  uu     gc           ga   gaccu 

>mghv-mir-M1-5 (-25.20)   [mghv-miR-M1-5:2-23]

--cA   UU   A      -C      -c  u 
    GAG  GAG UCGGGU  GUCUCc  cc g
    |||  ||| ||||||  ||||||  ||  
    cuc  cuc agccca  cggagg  gg g
cuuc   --   g      aa      aa  c 

>mghv-mir-M1-6 (-29.70)   [mghv-miR-M1-6:40-61]

---         c    a       --    u 
   aaccaccuc caca uuucaga  gucu a
   ||||||||| |||| |||||||  |||| g
   UUGGUGGAG GUGU AAAGUcu  uaga c
uUU         U    C       au    c 

>mghv-mir-M1-7 (-26.70)   [mghv-miR-M1-7-5p:1-22] [mghv-miR-M1-7-3p:40-60]

---        AG        ACC      g u 
   AAAGGUGG  GUGCGGUA   Uccuaa a u
   ||||||||  ||||||||   |||||| |  
   UUUCCACC  CGCGCUAU   AGgguu u a
UUA        --        ---      g c 

>mghv-mir-M1-8 (-29.50)   [mghv-miR-M1-8:7-28]

uuuaccAGC       G      U     gga    a 
         ACUCACU GGGGUU GGUCa   gauc a
         ||||||| |||||| |||||   |||| g
         ugaguga ucccaa ccagu   cuag u
--uucuuuu       a      -     ---    a 

>mghv-mir-M1-9 (-23.70)   [mghv-miR-M1-9:39-60]

--u     u  c         u   u  aua 
   gaggu cc ggcaaaugu gga ag   g
   ||||| || ||||||||| ||| ||    
   UUCCA GG CCGUUUACA Ucu uc   g
UUU     -  U         C   -  aau 

>hcmv-mir-UL22A (-23.10)   [hcmv-miR-UL22A:7-26] [hcmv-miR-UL22A*:44-65]

   g - U       C   CC      guu   g 
ccu u c AACUAGC UUC  GUGAGA   uau a
||| | | ||||||| |||  ||||||   |||  
gga A G UUGAUCG AAG  CACUcu   gua a
   G U U       U   AC      -au   c 

>hcmv-mir-UL36 (-48.30)   [hcmv-miR-UL36:6-27] [hcmv-miR-UL36*:50-71]

      -                     gg    uc  u 
ccacgU CGUUGAAGACACCUGGAAAGA  acgu  gc c
|||||| |||||||||||||||||||||  ||||  ||  
ggugCG GCAACUUUUGUGGACCUUUcu  ugca  cg g
      U                     --    --  g 

>hcmv-mir-UL112 (-33.60)   [hcmv-miR-UL112:43-64]

        cc     a   g      c  c  cu 
gacagccu  ggauc cau guuacu ag gu  g
||||||||  ||||| ||| |||||| || ||   
cugUCGGA  CCUAG GUG CAGUGA uc cg  c
        --     A   G      A  -  ac 

>hcmv-mir-UL148D (-38.40)   [hcmv-miR-UL148D:50-70]

a  a       uu    c    a    -g    gga 
 gc ggugagg  gggg ggac acgu  uugc   u
 || |||||||  |||| |||| ||||  ||||    
 cG CCACUUC  CCCC CCUG Ugca  agcg   u
c  -       UU    U    C    ag    gug 

>hcmv-mir-US5-1 (-32.10)   [hcmv-miR-US5-1:43-63]

u              u    u     cag  u 
 gaacgcuuucgucg guuu ucaug   cu u
 |||||||||||||| |||| |||||   || u
 cuUGCGAGAGCAGU CGAA AGUac   ga a
a              C    C     -ca  c 

>hcmv-mir-US5-2 (-25.50)   [hcmv-miR-US5-2:41-62]

g     uu   c          ---cu   a    
 gaggc  ucg cacaccuauc     gaa gcg 
 |||||  ||| ||||||||||     ||| || u
 uuCUG  AGC GUGUGGAUAG     cuu cgu 
u     -U   A          UAUUu   a    

>hcmv-mir-US25-1 (-35.00)   [hcmv-miR-US25-1:5-25] [hcmv-miR-US25-1*:48-69]

u u      - UC    GC        ccg  u  u 
 g gAACCG C  AGUG  UCGGACCg   gc gu u
 | |||||| |  ||||  ||||||||   || ||  
 C CUUGGC G  UCGC  AGCCUggc   cg cg c
a U      U GA    -A        -ca  -  u 

>hcmv-mir-US25-2 (-47.80)   [hcmv-miR-US25-2-5p:6-27] [hcmv-miR-US25-2-3p:64-86]

   uuA    --U  G             -    ucuuc        g 
cgg   GCGG   CU UUCAGGUGGAUGA gggc     acggucgg c
|||   ||||   || ||||||||||||| ||||     ||||||||  
gcc   CGCC   GA AGGUUCACCUAcu uccg     ugucggcu a
   uGG    CUC  G             g    -----        c 

>hcmv-mir-US33 (-34.40)   [hcmv-miR-US33-5p:8-29] [hcmv-miR-US33-3p:45-64]

    g   AU     C          G  c acga 
cacg uuG  UGUGC CGGACCGUGG CG g    a
|||| |||  ||||| |||||||||| || |     
gugc aAC  ACACG GCCUGGCACU gc c    a
    a   CU     A          -  - accc 

>osa-MIR435 (-38.30)   [osa-miR435:97-116]

u    ----ccu    aaa      ccagcag   u   gcg     -  -          gcuuca   - u 
 ucca       uccc   aacucc       acc gga   aaaau ug ccuugaauua      gac c a
 ||||       ||||   ||||||       ||| |||   ||||| || ||||||||||      ||| |  
 aggu       aggg   UUGAGG       UGG CCU   UUuug ac gggauuugau      cug g u
c    uaaaagu    -AG      ----UUA   -   --A     u  a          -aguug   u a 

>osa-MIR437 (-96.07)   [osa-miR437:155-175]

               ug  uu      u         g         a      u                   u     aauuaacaucuaaaau     au     -ca  a 
cccucuguuucauau  ua  guguuu aguuuuguu uaagucaaa uucuuu acuuugaccaaguuuguag aaaau                accaa  aaaua   cu u
|||||||||||||||  ||  |||||| ||||||||| ||||||||| |||||| ||||||||||||||||||| |||||                |||||  |||||   ||  
gggagacaagguaua  au  cacaaa ucaaaacag aUUCAGUUU AAGAGA UGAAAcugguucaaauauc uuuua                ugguu  uuuau   ga u
               gu  uc      -         g         G      U                   u     --------------gu     -c     aca  g 

>osa-MIR438 (-61.60)   [osa-miR438:24-44]

    u uuuu   caaacu  uuU            U                  -     ug  augggaguauauauuauugauauuggauc 
aacg g    ggg      ug   UCCCACGCGUUA AGUGAAAacuuuuggaau auguu  uu                             u
|||| |    |||      ||   |||||||||||| |||||||||||||||||| |||||  ||                             a
uugc c    ccu      ac   agggugcgcaau ucacuuuugaaaacuuug uacag  gg                             g
    - ---u   ucaucu  uau            u                  g     gu  gcauugugugcaauauauuuuaauacgaa 

>osa-MIR390 (-52.60)   [osa-miR390:19-39]

    u       u  u  A         G           c aaa 
ggua ggaacaa cc ug AGCUCAGGA GGAUAGCGCCu g   u
|||| ||||||| || || ||||||||| ||||||||||| |    
ccau ucuuguu gg ac ucgaguccu ucuaucgcgga c   c
    -       u  u  c         a           u aaa 

>osa-MIR439a (-60.80)   [osa-miR439a:66-86]

             uga   a        --u             ug 
uacccugucgaac   cgc guucgaca   guaccugucgaac  u
|||||||||||||   ||| ||||||||   |||||||||||||  g
gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
             UUG   C        ccc             uu 

>osa-MIR439b (-33.90)   [osa-miR439b:36-56]

uu          ug g  u          u 
  ccugucgaau  u gu guucgauagg a
  ||||||||||  | || ||||||||||  
  ggacAGCUUG  G CG CAAGCUGUcc c
--          UU G  C          c 

>osa-MIR439c (-60.80)   [osa-miR439c:66-86]

             uga   a        --u             ug 
uacccugucgaac   cgc guucgaca   guaccugucgaac  u
|||||||||||||   ||| ||||||||   |||||||||||||  g
gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
             UUG   C        ccc             uu 

>osa-MIR439d (-57.90)   [osa-miR439d:71-91]

ccacc             uca  ua        --u             ug 
     uacccugucgaac   cg  guucgaca   guaccugucgaac  u
     |||||||||||||   ||  ||||||||   |||||||||||||  g
     gugggauAGCUUG   GC  CAAGCUGU   uauggauagcuug  g
-----             UUG  GC        ccc             uu 

>osa-MIR439e (-60.90)   [osa-miR439e:71-91]

ccacc             uga   a        --u             ug 
     uacccugucgaac   cgc guucgaca   guaccugucgaac  u
     |||||||||||||   ||| ||||||||   |||||||||||||  g
     gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
-----             UUG   C        ccc             uu 

>osa-MIR439f (-60.90)   [osa-miR439f:69-89]

acc             uga   a        --u             ug 
   uacccugucgaac   cgc guucgaca   guaccugucgaac  u
   |||||||||||||   ||| ||||||||   |||||||||||||  g
   gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
---             UUG   C        ccc             uu 

>osa-MIR439g (-54.90)   [osa-miR439g:64-84]

u          uga   a        --u             ug 
 ccugucgaac   cgc guucgaca   guaccugucgaac  u
 ||||||||||   ||| ||||||||   |||||||||||||  g
 ggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
-          UUG   C        ccc             uu 

>osa-MIR439h (-60.90)   [osa-miR439h:72-92]

accacc             uca   a        --u             ug 
      uacccugucgaac   cgc guucgaca   guaccugucgaac  u
      |||||||||||||   ||| ||||||||   |||||||||||||  g
      gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
------             UUG   C        ccc             uu 

>osa-MIR439i (-61.40)   [osa-miR439i:70-90]

--cacc             uga   a        --u             ug 
      uacccugucgaac   cgc guucgaca   guaccugucgaac  u
      |||||||||||||   ||| ||||||||   |||||||||||||  g
      gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
caaauc             UUG   C        ccc             uu 

>osa-MIR439j (-33.10)   [osa-miR439j:93-113]

      -  a    c     g -a u        ggggcguggcuacagugacacuacaaugu 
gcaggg ac uauc aacgg c  g guucgaua                             u
|||||| || |||| ||||| |  | ||||||||                              
uguccc ug auAG UUGUU G  C CAAGCUGU                             u
      a  g    C     G CG -        acacuaauuuauuaaaauuuuuaucuuuu 

>osa-MIR440 (-60.30)   [osa-miR440:75-98]

      a ug      c   g  c          c        u     caa  -    cc 
auugcu u  uuggug ugg cu guccugauca uaggagac cugau   gc uagg  u
|||||| |  |||||| ||| || |||||||||| |||||||| |||||   || ||||   
uagcga a  agccac auc gA CAGGGCUAGU GUCCUCUG GAuua   ug auuc  a
      g gu      a   g  A          A        U     ---  u    aa 

>osa-MIR396d (-44.50)   [osa-miR396d:21-41]

-      -gu     cau    UC  --CA         GAACU u   cucg       gua  u  u    uu 
 aaagau   gcggg   gcuu  CA    GGCUUUCUU     G gaa    ugggggu   ug gc caug  g
 ||||||   |||||   ||||  ||    |||||||||     | |||    |||||||   || || ||||  g
 uuucug   ugccc   cgag  gu    ucgaaagaa     c cuu    accuccg   gc ug gugu  g
g      ucu     -cu    cu  uaag         -aagu u   ---a       gug  -  -    ua 

>osa-MIR396e (-74.90)   [osa-miR396e:13-33] [osa-miR396e-3p:152-175]

    g    c      CA                g   uc      gu uaugugcucauguugggauuguggucgguggccuccaauucu 
gcgg caug uuUCCA  GGCUUUCUUGAACUGu aac  gugggg  g                                          c
|||| |||| ||||||  |||||||||||||||| |||  ||||||  |                                          u
cgcc guac AAAGGU  CCGAAAGAACUUGGUA uug  caucuc  c                                          g
    -    c      AC                g   uc      ug ugguuucugucuugccccucgagcuguuaagucgaaagaaaa 

>osa-MIR441a (-67.84)   [osa-miR441a:83-106]

aaaauauauu     g    uu   ua   a                         a      c        cuagau 
          aauug uacu  cuc  uuu acaauguaagucauuuuagcauuuc cacauu auauugau      u
          ||||| ||||  |||  ||| ||||||||||||||||||||||||| |||||| ||||||||       
          uuaau auga  gag  aaa uguuacauucaguaaaaucguAAAG GUGUAA UAUAACUA      c
-----aaaac     g    gg   gc   g                         G      A        CCAUua 

>osa-MIR441b (-57.60)   [osa-miR441b:93-116]

uuaucaccacugacaua      cc      c                g  a  uu      c         -uua    auc 
                 cuuccu  guuuca aauguaagucauuuua ua uu  cauauu auauugaug    auga   u
                 ||||||  |||||| |||||||||||||||| || ||  |||||| |||||||||    ||||    
                 gaggga  caaagu uuacauucaguaagau gu AA  GUGUAA UAUAACUAC    uacu   a
---------------ac      ua      a                g  A  GG      A         CAUg    cag 

>osa-MIR441c (-105.20)   [osa-miR441c:95-118]

                          c            uu                                gau 
uacuuccucuguuucauaauguaagu auuuuagcauuu  cauauuuauauugaugguaaugaaucuagaua   a
|||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||    
augaaggaggcaaaguguuacauuca uaagaucguAAA  GUGUAAAUAUAACUACCAUuacuuagaucugu   u
                          a            GG                                aua 

>osa-MIR442 (-83.60)   [osa-miR442:52-75]

       a         a   auaaau  aaaa      -u   --ua      UGA   --                  cuu             c   a g  cu ac     gg   u 
cacauau uggaguauu aau      ga    aauaac  aau    uacaga   CGU  GUAAAUUGCGAGACGAAU   uuaagccuaauug ucc u au  g  aaugu  ugc a
||||||| ||||||||| |||      ||    ||||||  |||    ||||||   |||  ||||||||||||||||||   ||||||||||||| ||| | ||  |  |||||  |||  
gugugua acuucauaa uug      cu    uuauug  uug    augucu   gca  cauuugacgcucugcuua   aauucggauuaau agg a ua  c  uuaca  aug c
       a         a   ---cau  --ga      uu   uuua      uag   ga                  aau             u   c g  au gu     -a   a 

>osa-MIR443 (-61.00)   [osa-miR443:38-59]

     --cau         ccc      ----ag            A  A                     --   a 
cgucc     aaaaacaaa   aaaacu      augugauauAUC CA UACAAUAAAUCUGGAuaggag  ucu u
|||||     |||||||||   ||||||      |||||||||||| || |||||||||||||||||||||  |||  
gcagg     uuuuuguuu   uuuuga      uacacuguauag gu auguuauuuagaucuaucuuc  aga c
     uuuuu         aua      cuuaua            g  c                     au   c 

>osa-MIR445a (-107.10)   [osa-miR445a:241-264]

        a       -                         g      a a      a   uc    augaaa      c                 a  c       au    a   augaaaaguuuacu 
ucacauug auguuug acacuaauuuggaguauuaaacaua acuaau a aaaacu auu  auaa      gcuaau ugcgagacgaauuuuuu ag cuaauua  ccau auu              g
|||||||| ||||||| ||||||||||||||||||||||||| |||||| | |||||| |||  ||||      |||||| ||||||||||||||||| || |||||||  |||| |||              u
agugUAGC UACAAAU UGUGAUUAAAUcucauaauuuguau ugauua u uuuugg uaa  uauu      ugauua gcgcucugcuuagaaaa uc gauuaau  ggua uaa              a
        C       A                         g      a a      a   ga    ggaacc      a                 c  a       gu    c   acuguuacacuacg 

>osa-MIR445b (-113.00)   [osa-miR445b:230-253]

    g          a       -                         g c    -aa      a   uc    augaaa      c           c     a  c       au    a    -   a 
gucc ugucacaucg auguuug acgcuaauuuagaguauuaaacaua a uaau   aaaacu auu  auaa      gcuaau ugcgagacgaa uuuuu ag cuaauua  ccau auua uga a
|||| |||||||||| ||||||| ||||||||||||||||||||||||| | ||||   |||||| |||  ||||      |||||| ||||||||||| ||||| || |||||||  |||| |||| ||| a
cagg acagugUAGC UACAAAU UGUGAUUAAAUcucauaauuuguau u auua   uuuugg uaa  uauu      ugauua gcgcucugcuu gaaaa uc gauuaau  ggua uaau auu g
    g          C       A                         g a    aua      a   ga    ggaacc      a           a     c  a       gu    c    c   u 

>osa-MIR445c (-119.70)   [osa-miR445c:229-252]

cc           a       -                     c   g      a a      a   uc    augaaa      cu                           au    a    -   a 
  gugucacaucg auguuug acgcuaauuuggaguauuaaa aua acuaau a aaaacu auu  auaa      gcuaau  gcgagacgaauuuuuuaagccuaauua  ccau auua uga a
  ||||||||||| ||||||| ||||||||||||||||||||| ||| |||||| | |||||| |||  ||||      ||||||  |||||||||||||||||||||||||||  |||| |||| ||| a
  uacagugUAGC UACAAAU UGUGAUUAAAUcucauaauuu uau ugauua u uuuugg uaa  uauu      ugauua  ugcucugcuuagaaaauucggauuaau  ggua uaau auu g
-a           C       A                     a   g      a a      a   ga    ggaacc      ag                           gu    c    c   u 

>osa-MIR445d (-126.72)   [osa-miR445d:264-287]

u  --    aa                  a      aug         aaaa                 aug     c ---cc   c     cccu ga        c    ug  ucua                a         c     gaugc 
 gg  ccaa  uuuagucccugucacauc gauguu   acacuaauu    guauuaaacauagacua   acaaa c     auu cauaa    g  uuaauucg gaga  aa    uugagucuaauuaauc augauuagc uaugu     u
 ||  ||||  |||||||||||||||||| ||||||   |||||||||    |||||||||||||||||   ||||| |     ||| |||||    |  |||||||| ||||  ||    |||||||||||||||| ||||||||| |||||     a
 cc  gguu  aaaucagggauagugUAG CUACAA   UGUGAUUAA    uauaauuuguauuugau   uguuu g     uaa guauu    c  gauuaagc cucu  uu    aauucggauuaauuag uauuaauug guaca     c
a  ua    -g                  C      AUA         -AUc                 gaa     u auuau   c     uacu uc        a    gu  uaaa                g         u     aauca 

>osa-MIR445e (-123.10)   [osa-miR445e:231-254]

    g          a       -                         g      a a      a   uc    augaaa      c                 a  c       au    a    -   a 
gucc ugucacaucg auguuug acgcuaauuuggaguauuaaacaua acuaau a aaaacu auu  auaa      gcuaau ugcgagacgaauuuuuu ag cuaauua  ccau auua uga a
|||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||| | |||||| |||  ||||      |||||| ||||||||||||||||| || |||||||  |||| |||| ||| a
cagg acagugUAGC UACAAAU UGUGAUUAAAUcucauaauuuguau ugauua u uuuugg uaa  uauu      ugauua gcgcucugcuuagaaaa uc gauuaau  ggua uaau auu g
    g          C       A                         g      a a      a   ga    ggaacc      a                 c  a       gu    c    c   u 

>osa-MIR445f (-134.00)   [osa-miR445f:252-275]

-agau      aaaac    u     g          a       -                         g      a a      a   uc    augaaa      c                 a  c       au    a    -   a 
     ggggcu     uuuu agucc ugucacaucg auguuug acgcuaauuuggaguauuaaacaua acuaau a aaaacu auu  auaa      gcuaau ugcgggacgaauuuuuu ag cuaauua  ccau auua uga a
     ||||||     |||| ||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||| | |||||| |||  ||||      |||||| ||||||||||||||||| || |||||||  |||| |||| ||| a
     cccuga     aaaa ucagg acagugUAGC UACAAAU UGUGAUUAAAUcucauaauuuguau ugauua u uuuugg uaa  uauu      ugauua gcgcucugcuuagaaaa uc gauuaau  ggua uaau auu g
uuugu      ---au    u     g          C       A                         g      a a      a   ga    ggaacc      a                 c  a       gu    c    c   u 

>osa-MIR445g (-114.60)   [osa-miR445g:236-259]

uuuu     g          a       -                         g      a a     ua   uc    augaaa      c                 a  cc      au    a    -   a 
    agucc ugucacaucg auguuug acgcuaauuuggaguauuaaacaua acuaau a aaaac  auu  auaa      gcuaau ugcgagacgaauuuuuu ag  uaauua  ccau auua uga a
    ||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||| | |||||  |||  ||||      |||||| ||||||||||||||||| ||  ||||||  |||| |||| ||| a
    ucagg acagugUAGC UACAAAU UGUGAUUAAAUcuuauaauuuguau ugauua u uuuug  uaa  uauu      ugauua gcguucugcuuagaaaa uc  auuaau  ggua uaau auu g
aaau     g          C       A                         g      a a     ua   ga    ggaacc      a                 c  aa      gu    c    c   u 

>osa-MIR445h (-124.00)   [osa-miR445h:237-260]

u   u     g          a       -                         g      a a      a   uc    augaaa      c                 a  c       au    a    -   a 
 uuu agucc ugucacauug auguuug acacuaauuuggaguauuaaacaua acuaau a aaaacu auu  auaa      gcuaau ugcgagacgaauuuuuu ag cuaauua  ccau auua uga a
 ||| ||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||| | |||||| |||  ||||      |||||| ||||||||||||||||| || |||||||  |||| |||| ||| a
 aaa ucagg acagugUAGC UACAAAU UGUGAUUAAAUcucauaauuuguau ugauua u uuuugg uaa  uauu      ugauua gcgcucugcuuagaaaa uc gauuaau  ggua uaau auu g
a   u     g          C       A                         g      a a      a   ga    ggaacc      a                 c  a       gu    c    c   u 

>osa-MIR445i (-105.70)   [osa-miR445i:203-226]

    uuu     g          a       -                         g      a a      a   uc    augaaa      c                aagcc      a 
acuu   agucc ugucacaucg auguuug acgcuaauuuagaguauuaaauaua acuaau a aaaacu auu  auaa      gcuaau ugugagaugaauuuuu     uaauua u
||||   ||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||| | |||||| |||  ||||      |||||| ||||||||||||||||     |||||| c
ugaa   ucagg acagugUAGC UACAAAU UGUGAUUAAAUuucauaauuuguau ugauua u uuuugg uaa  uauu      ugauua gcgcucugcuuagaaa     auuaau c
    -uu     g          C       A                         g      a a      a   ga    ggaacc      a                -----      a 

>osa-MIR446 (-88.80)   [osa-miR446:105-128]

-------aaa                              c   a  aa        c                         u   gau 
          uauguacuuccuuuguuucacaguguaagu auu ua  auuuccca auuuauauugauguuaaugaaucua aua   a
          |||||||||||||||||||||||||||||| ||| ||  |||||||| ||||||||||||||||||||||||| |||    
          auauaugagggaggcaaaguguuacauuca uaa au  UAAAGGGU UAAGUAUAACUACaauuauuuagau ugu   u
caaguucaag                              a   g  GG        A                         c   aua 

>osa-MIR444a (-90.80)   [osa-miR444a.2:94-114] [osa-miR444a.1:99-119]

au     u              a    ug                      -  ug    -c  a 
  gcaau gggggcagcaagcu gagg  gcaacugcauaauuugcaagaa au  uugg  ug a
  ||||| |||||||||||||| ||||  |||||||||||||||||||||| ||  ||||  || g
  cguug ccucCGUCGUUCGA CUCC  CGUUGACGUauugaacguucuu ua  agcc  ac a
ac     u              A    GU                      a  gu    au  u 

>dre-mir-429 (-39.70)   [dre-miR-429:51-72]

cu   u        u -          ug      ug   u 
  ugu gauggacg c uuaccagaca  guuaga  uaa a
  ||| |||||||| | ||||||||||  ||||||  |||  
  aca cuaccUGC G AAUGGUCUGU  UAAUcu  guu a
gu   -        C U          CA      gu   c 

>hsa-mir-431 (-43.60)   [hsa-miR-431:20-40] [hsa-miR-431*:63-84]

---------------ucc  c     c       U          C  U A     ----   aca 
                  ug uuguc ugcgagg GUCUUGCAGG CG C UGCAg    gcc   c
                  || ||||| ||||||| |||||||||| || | |||||    |||    
                  ac agcag acgcUCU CGGGACGUUC GC G ACguu    ugg   u
gcagcaaccacuacuccu  -     a       U          U  U G     gcaa   cag 

>rno-mir-431 (-45.30)   [rno-miR-431:20-40]

-----------------------  c    ---c          gU U     AGGCCGUCAUGCAggc 
                       uc ugcg    guccugcgag  G CUUGC                c
                       || ||||    ||||||||||  | |||||                 
                       ag acgc    cgggacguuc  c ggacg                a
gcagcaaccgcuacuucuacagc  a    ucuu          ug u     uugcaauggcagucac 

>hsa-mir-433 (-38.20)   [hsa-miR-433:64-85]

  gg      gua   u           u   --------  g     cu 
cc  ggagaa   cgg gagccugucau auu        ca agagg  a
||  ||||||   ||| ||||||||||| |||        || |||||   
gg  ccucuU   GCU CUCGGGUAGUA UAg        gu ucucc  g
  -a      GUG   C           C   gaagaguu  g     ua 

>rno-mir-433 (-38.20)   [rno-miR-433:64-85]

  gg      gua   u           u   --------  g     cu 
cc  ggagaa   cgg gagccugucau auu        ca agagg  a
||  ||||||   ||| ||||||||||| |||        || |||||   
gg  ccucuU   GCU CUCGGGUAGUA UAg        gu ucucc  g
  -a      GUG   C           C   gaagaguu  g     ua 

>hsa-mir-329-1 (-32.60)   [hsa-miR-329:50-71]

     cu           uu ug   uuc      u  aa 
gguac  gaagagagguu  c  ggu   uguuuc uu  u
|||||  |||||||||||  |  |||   |||||| ||   
cuaug  cuUUUCUCCAA  G  CCA   ACAAag ag  g
     ac           UU GU   --C      c  ga 

>hsa-mir-329-2 (-35.20)   [hsa-miR-329:52-73]

g      cu           uu ug   uuc      u  au 
 ugguac  gaagagagguu  c  ggu   uguuuc uu  u
 ||||||  |||||||||||  |  |||   |||||| ||   
 acuaug  cuUUUCUCCAA  G  CCA   ACAAag ag  g
a      ac           UU GU   --C      c  ga 

>hsa-mir-451 (-44.70)   [hsa-miR-451:17-38]

c     a        gA                 A 
 uuggg auggcaag  AACCGUUACCAUUACUG G
 ||||| ||||||||  |||||||||||||||||  
 gaccc uaucguuc  uugguaaugguaaugau U
a     a        uc                 U 

>mmu-mir-451 (-45.70)   [mmu-miR-451:17-38]

cu     au      gA                 A 
  uggga  ggcgag  AACCGUUACCAUUACUG G
  |||||  ||||||  |||||||||||||||||  
  acccu  ucguuc  uuggcaaugguaaugau U
ac     cg      uc                 U 

>rno-mir-451 (-43.90)   [rno-miR-451:17-38]

uu     au      gA                 A 
  uggga  ggcgag  AACCGUUACCAUUACUG G
  |||||  ||||||  |||||||||||||||||  
  acccu  ucguuc  uugguaaugguaaugau U
ac     cg      uc                 U 

>dre-mir-451 (-37.30)   [dre-miR-451:11-32]

          A    G            A 
agaggcggcg AACC UUACCAUUACUG G
|||||||||| |||| ||||||||||||  
uuuccgucgu uugg aaugguaaugau U
          c    g            U 

>hsa-mir-452 (-40.90)   [hsa-miR-452:14-35] [hsa-miR-452*:58-79]

  u          AAC G        G  A        uuug 
gc aagcacuuac   U UUUGCAGA GA ACUGAgac    u
|| ||||||||||   | |||||||| || ||||||||    a
cg uucGUGAAUG   A AAACGUCU CU ugacucug    a
  u          --A G        A  C        uauc 

>mmu-mir-452 (-39.70)   [mmu-miR-452:17-38]

  u     g    aa  G        G  A        uuua 
gc aagca uuac  cU UUUGCAGA GA ACUGAGAC    u
|| ||||| ||||  || |||||||| || ||||||||    a
cg uucgu aaug  ga aaacgucu cu ugacucug    a
  u     g    --  g        a  c        uauc 

>hsa-mir-409 (-38.30)   [hsa-miR-409-5p:15-37] [hsa-miR-409-3p:47-68]

u     u  gg   A    AC         -    - AUc 
 gguac cg  gag GGUU  CCGAGCAAC UUUG C   u
 ||||| ||  ||| ||||  ||||||||| |||| |    
 cuaug gc  uUC CCAA  GGCUCGUUG AAGc g   g
a     -  uu   C    GU         U    a cag 

>mtr-MIR162 (-51.60)   [mtr-miR162:87-107]

agau    -u     uc u a          c    c       u    c  aau       guc 
    gagg  gaagu  g c cuggaugcag gguu aucgauc guuc ug   uuuguuu   u
    ||||  |||||  | | |||||||||| |||| ||||||| |||| ||   |||||||    
    cucc  uuuca  c g GACCUACGUC CCAA UAGCUgg uaag ac   aaacaaa   c
---u    cc     cu - c          U    A       c    u  ---       aug 

>mtr-MIR160 (-59.80)   [mtr-miR160:21-41]

--   -u        uaauu      C       C           ug -     u      g 
  aga  auauauac     gcgUGC UGGCUCC UGUAUGCCAuu  u agagu caucaa a
  |||  ||||||||     |||||| ||||||| |||||||||||  | ||||| ||||||  
  ucu  uauaugug     uguacg accgagg gcgugcgguaa  a uuuca guaguu u
ua   uu        ----u      u       a           gu a     -      g 

>mtr-MIR166 (-48.70)   [mtr-miR166:82-102]

cagac    gaag     ca         u     a       c     guca    uaaa 
     auac    gaguu  ggggaaugg gucug uucgaga cauuc    caag    c
     ||||    |||||  ||||||||| ||||| ||||||| |||||    ||||    a
     uaug    cucga  CCCCUUACU CGGAC AGGCUcu guaag    guuc    g
cguac    -aua     uc         U     C       a     ---a    cgau 

>mtr-MIR169a (-62.50)   [mtr-miR169a:21-41]

a     ca      g    gC         UG        Aca   --uu   -   ugu  a 
 agagg  gagaga uaau  AGCCAAGGA  ACUUGCCG   aca    ggc gaa   uc u
 |||||  |||||| ||||  |||||||||  ||||||||   |||    ||| |||   ||  
 ucuuc  cucucu auug  ucgguuccu  ugaacggc   ugu    ccg cuu   ag g
-     ua      g    ua         gu        -cg   uacu   u   --u  u 

>mtr-MIR169b (-58.00)   [mtr-miR169b:21-41]

a     ca      g    gC         UG   U    A  -acguu   -   ugu  a 
 agagg  gagaga uaau  AGCCAAGGA  ACU GCCG ca      ggc gaa   uc u
 |||||  |||||| ||||  |||||||||  ||| |||| ||      ||| |||   ||  
 ucuuc  cucucu auug  ucgguuccu  uga cggc gu      ccg cuu   ag g
-     ua      g    ua         gu   c    c  guuacu   u   --u  u 

>mtr-MIR399b (-44.70)   [mtr-miR399b:73-93]

----------------          ug     a           uaugg   ua    auuu 
                ucauagggca  ucucu uugguagguga     uga  uuuc    g
                ||||||||||  ||||| |||||||||||     |||  ||||     
                aguGUCCCGU  AGAGG AACCGUucacu     acu  ggag    a
acaaauucgauuugug          CG     A           uaaag   uc    auua 

>mtr-MIR399d (-48.90)   [mtr-miR399d:90-110]

uaaag     a  u  g  a       ug     a           uauggugauauuucauuu 
     uaagc aa ca uc uagggca  ucucu uuggcagguga                  g
     ||||| || || || |||||||  ||||| |||||||||||                   
     auucg uu gu ag AUCCCGU  AGAGG AACCGUucacu                  a
-acaa     a  u  g  c       CG     A           uaaaaaucucggaauuuc 

>mtr-MIR393 (-48.99)   [mtr-miR393:21-41]

aacu  a   u       c            C    U       uaauauuucaacuuuagucacuu 
    gc acu gaggagg aUCCAAAGGGAU GCAU GAUCcua                       u
    || ||| ||||||| |||||||||||| |||| |||||||                       a
    cg uga uuccucu uagguuucccua cgua cuagggu                       a
-cau  a   u       u            c    -       uaauucauaauauacucucuuuu 

>mtr-MIR395a (-55.80)   [mtr-miR395a:96-116]

uuuu     a   uu   u          ug          gc    -    aug     gg      a 
    uguug uug  ucu agaguuccuu  aacgcuucau  auga gaau   uauuu  ucuaau u
    ||||| |||  ||| ||||||||||  ||||||||||  |||| ||||   |||||  ||||||  
    acgac aac  ggg uCUCAAGGGG  UUGUGAAGUA  uacu cuug   auaga  agauua c
-acc     c   uu   u          GU          ac    u    ---     aa      c 

>mtr-MIR395b (-49.80)   [mtr-miR395b:85-105]

uacu         -uc   u          ug         ---    u   a a    -    a 
    uguugauuu   ucu ggaguuccuc  aaugcuuca   aaca gag c aucu ugau g
    |||||||||   ||| ||||||||||  |||||||||   |||| ||| | |||| ||||  
    acaacuaag   agg uCUCAAGGGG  UUAUGAAGU   uugu cuu g uagg auua a
--au         uua   u          GU         Aac    u   - a    u    a 

>mtr-MIR399c (-50.40)   [mtr-miR399c:80-100]

guucu     ug  g    a     a                 ga    uaaaaa    a 
     gcugu  ag aaug uaggg aaaucucuuuuggcaga  ggag      ucuu a
     |||||  || |||| ||||| |||||||||||||||||  ||||      ||||  
     cgaca  uu uuac GUCCC UUUAGAGGAAACCGUuu  ucuu      agga a
guuau     gu  -    c     G                 gg    --ugua    c 

>mtr-MIR399a (-61.90)   [mtr-miR399a:95-115]

ucca        uu    ua a   ug   u    a         a  uagu     ---u     a     
    aguugcag  gaau  c ggg  agu cucc uuggcaggu gc    cacua    augau ugca 
    ||||||||  ||||  | |||  ||| |||| ||||||||| ||    |||||    ||||| ||| u
    ucaacguc  cuua  G CCC  UUA GAGG AACCGUcua cg    gugau    uacua acgu 
-auc        cu    gc A   GU   -    A         a  ---u     ucuu     -     

>mtr-MIR399e (-56.40)   [mtr-miR399e:95-115]

ucca       guu    ua a   ug   u    a         a  uagc     ua    --a     
    aguugca   gaau  c ggg  agu cucc uuggcaggu gc    cacua  ugau   ugca 
    |||||||   ||||  | |||  ||| |||| ||||||||| ||    |||||  ||||   ||| u
    ucaacgu   cuua  G CCC  UUA GAGG AACCGUcua ug    gugau  acua   acgu 
-auc       acu    gc A   GU   -    A         a  ---u     uc    cua     

>mtr-MIR319 (-87.10)   [mtr-miR319:169-188]

auua   g       u    a                 cu  u       u      uuu  a      g   ac     g  u  aa        -ac    a 
    uua aaauaga gaag gagcuuccuucagucca  ca ggaaggg aagggg   ga uuaccu cug  ucauu au ca  cacaauag   aauu u
    ||| ||||||| |||| |||||||||||||||||  || ||||||| ||||||   || |||||| |||  ||||| || ||  ||||||||   ||||  
    aau uuuaucu uuuC CUCGAGGGAAGUCAGGU  gu ucuucuu uuccuu   uu agugga gac  aguaa ug gu  guguuauc   uugg g
auua   a       u    C                 Uc  u       -      -cu  a      g   gu     g  u  aa        gua    g 

>mtr-MIR156 (-102.28)   [mtr-miR156:21-41]

agccau  --au   uc  a     C      -        ACA    cc     acaaguaacaaaaaacuaccaacuaucaacauuuugucuacuaugaagaaaaucacaugucuagacuauaguuacgaauggaagauacauucaaugauguuuaugaaaauuugagacggucgaggacuauaguuacucuaucgcauacauuuaaugacaaaaaaaauuguguacucuua 
      ga    cag  cg gaUGA AGAAGA GAGAGAGC   ccca  ugauu                                                                                                                                                                                   u
      ||    |||  || ||||| |||||| ||||||||   ||||  |||||                                                                                                                                                                                    
      cu    guc  gu uuacu ucuucu cuuucucg   gggu  acuaa                                                                                                                                                                                   u
---ccu  gacc   cc  g     c      u        --a    --     gacaacccuccuuaaggaguguuccauuuugaacugagaaugaauaacguuuuagauuacuaaaaaaaugguacuauaaaugaaaaaaacuuguuaaaaaaaugguacuauaacuuacguuaaaaaauaugacguaaaacuaagaacguaucuuuaacuuacuucuacauaacuuuuau 

>mtr-MIR171 (-40.20)   [mtr-miR171:75-95]

ugaauuccccuc     --uu          u  u        a  c    uu  ug   
            cgcuu    ugauguuggc ug cucaauca au aaag  cu  aa 
            |||||    |||||||||| || |||||||| || ||||  ||  | a
            gcgaa    aCUAUAACCG GC GAGUUAGU ug uuuc  ga  uu 
---cugaaaaua     uuau          U  U        c  a    uu  gu   

>sof-MIR156 (-67.70)   [sof-miR156:21-40]

ggu     a   --gugga          -     -        a      gccu   uu      ugaacg   g 
   ggaga gag       ggcUGACAGA AGAGA GUGAGCAC cauggu    uuc  gcauga      auc a
   ||||| |||       |||||||||| ||||| |||||||| ||||||    |||  ||||||      |||  
   ucucu cuc       ccgacugucu ucucu cacucgug guaucg    aag  cguacu      ugg g
--c     -   aagauug          c     u        c      ----   cu      ------   a 

>sof-MIR396 (-68.80)   [sof-miR396:21-41]

aga      -       ga c            C             -  -aa -   -  c  c    a 
   uggccu ucuuugu  u UUCCACAGCUUU UUGAACUGcaucu cu   g agg ag ag ucga g
   |||||| |||||||  | |||||||||||| ||||||||||||| ||   | ||| || || ||||  
   accgga agagacg  a agggugucgaaa aacuugacgugga ga   c ucc uc uc agcu c
--a      g       uc a            u             c  gua g   a  -  a    c 

>sof-MIR159a (-111.10)   [sof-miR159a:226-246]

ccu    cu      -u  a           a   u     u  ag    -  ucug     --uu  u c   g    u     guuc    uau         ucauguauguguguauguauuuucgagaggg 
   gaug  uggauu  ga gcggagcuccu uca uccaa ga  ggcc gu    aaggg    gu c gcu cucg ucaug    ccac   ccuaucuca                               a
   ||||  ||||||  || ||||||||||| ||| ||||| ||  |||| ||    |||||    || | ||| |||| |||||    ||||   |||||||||                               g
   cuac  accuag  cu cGUCUCGAGGG AGU AGGUU cu  ccgg cg    uuccc    ca g cga gagc aguac    ggug   ggauagagu                               g
--c    cu      uc  a           A   U     U  cg    u  ----     cugc  c u   g    c     guuu    uuc         uucugcuggugguacucucagaucgaggaga 

>sof-MIR159b (-111.40)   [sof-miR159b:227-247]

ccu    cu   a  -u  a           a   u     u  ag    -  ucug     --    u c   g    u     guuc    uau         ucauguauguguguauguauuuucggagaggg 
   gaug  ugg uu  ga gcggagcuccu uca uccaa ga  ggcc gu    aaggg  uggu c gcu cucg ucaug    ccac   ccuaucuca                                a
   ||||  ||| ||  || ||||||||||| ||| ||||| ||  |||| ||    |||||  |||| | ||| |||| |||||    ||||   |||||||||                                 
   cuac  acc ag  cu cGUCUCGAGGG AGU AGGUU cu  ccgg cg    uuccc  gcca g cga gagc aguac    ggug   ggauagagu                                g
--c    cu   a  uc  a           A   U     U  cg    u  ----     cu    c u   g    c     guuu    uuc         uucugcugguggcacucucagaucgaggagag 

>sof-MIR159d (-107.02)   [sof-miR159d:226-246]

ccu    cu      -u  a           a   u     u  ag    -  ucug     uuguucc  ugcucguucaugguucccacuauccuaucucaucauguauguguguauguauuuucgagagggag 
   gaug  uggauu  ga gcggagcuccu uca uccaa ga  ggcc gu    aaggg       gc                                                                 g
   ||||  ||||||  || ||||||||||| ||| ||||| ||  |||| ||    |||||       ||                                                                  
   cuac  accuag  cu cGUCUCGAGGG AGU AGGUU cu  ccgg cg    uuccc       cg                                                                 a
--c    cu      uc  a           A   U     U  cg    u  ----     -cugcca  ucgaguagccaguacguuugguguucgcauagaguaucugcuggggguacucucagaucgaggag 

>sof-MIR159e (-108.00)   [sof-miR159e:225-245]

cu    cu      u  a   -        a   u     u  ag    -  ucug     --    u c   gc   u     guuc    uau         ucauguauguguguauguauuuucgagaggg 
  gaug  uggauu ga gcg gagcuccu uca uccaa ga  ggcc gu    aaggg  uggu c gcu  ucg ucaug    ccac   ccuaucuca                               a
  ||||  |||||| || ||| |||||||| ||| ||||| ||  |||| ||    |||||  |||| | |||  ||| |||||    ||||   |||||||||                               g
  cuac  accuag cu cgU CUCGAGGA AGU AGGUU cu  ccgg cg    uuccc  gcca g cga  agc aguac    ggug   ggauagagu                               g
-c    cu      u  a   U        A   U     U  cg    u  ----     cu    c u   ga   c     guuu    uuc         uucugcugguggcacucucagaucgaggaga 

>sof-MIR159c (-110.70)   [sof-miR159c:199-219]

ugaagacgacgacgaagaagaagauggcgaagaaaagugaucgaa                  uc  g         ----    c    g  g  g    u     g      -cucu       caa   - u 
                                             gagcucccuucgauccaa  ca gaggggaag    uggu gguu ca cu ccgg ucaug augccu     ggugcag   uga c a
                                             ||||||||||||||||||  || |||||||||    |||| |||| || || |||| ||||| ||||||     |||||||   ||| |  
                                             CUCGAGGGAAGUUAGGUU  gu cucccuuuc    acca ccaa gu ga ggcc aguac uguggg     ucacguc   acu g a
------------------------ucucucucuccuuucucucUC                  -C  g         uacu    c    -  a  g    c     g      uacgu       --c   c u 

>sof-MIR167a (-84.00)   [sof-miR167a:21-41]

agug    -a    a   u           C              gugguauauaugaauauaugaugucuuuaccucugaucucucccugacug 
    gugc  ccac agu ggUGAAGCUGC AGCAUGAUCUGaug                                                  u
    ||||  |||| ||| ||||||||||| ||||||||||||||                                                   
    cacg  ggug ucg cuacuuugaug ucguacuggacuac                                                  c
--ua    ag    g   u           -              gaguaauagggagaaagaagggaggggaguaggaccuaaguaccuagcca 

>sof-MIR167b (-87.60)   [sof-miR167b:21-41]

agug    -a    a   u           C              gugguauauaugaauauaugaugucuuuaccucugaucucucccugacug 
    gugc  ccac agu ggUGAAGCUGC AGCAUGAUCUGaug                                                  u
    ||||  |||| ||| ||||||||||| ||||||||||||||                                                   
    cacg  ggug ucg cuacuuugaug ucguacuggacuac                                                  c
--ua    ag    g   u           -              gaguaauagggagaaagaagggaggggaguaggaccuaaguaccuaggca 

>sof-MIR168a (-68.80)   [sof-miR168a:21-41]

gcc  c      c   g gc             AU     C   ccg    g 
   gc gcgccg cuc g  UCGCUUGGUGCAG  CGGGA ccg   cccg c
   || |||||| ||| |  |||||||||||||  ||||| |||   |||| c
   cg cgcggc gag c  agugaaccacguu  gcccu ggc   gggc g
-ac  a      c   g ua             cc     a   --a    a 

>sof-MIR168b (-57.60)   [sof-miR168b:21-40]

ccgcccc      --     gc        -    AU     C   ccg    g 
       gcgccg  ucugg  UCGCUUGG GCAG  CGGGA ccg   cccg c
       ||||||  |||||  |||||||| ||||  ||||| |||   |||| c
       cgcggc  aggcu  agugaacc cguu  gcccu ggc   gggc g
--accga      cg     -a        a    cc     a   --a    a 

>sof-MIR408a (-122.50)   [sof-miR408a:244-264]

agaagau     -    -u    a      u       a   u    u     cau     aaauuuccaauuucuguccuccgcuaggccgcuacugcauuucuguuugcuugcucacaaaacggagggauuugugagaguu 
       gggua uggu  ggag caggga gaggcag gca ggga gaggc   caaca                                                                                  a
       ||||| ||||  |||| |||||| ||||||| ||| |||| |||||   |||||                                                                                  u
       cccgu gcca  ccuC GUCCCU CUCCGUC CGU cccu cuucg   guugu                                                                                  c
---cguu     u    cc    G      U       A   C    c     -uu     ccuguggucgacucgagagucggcagaguccaguccgguaguggugaaguggucccuccguggaagaaacaagaaagacgga 

>sof-MIR408b (-119.00)   [sof-miR408b:247-267]

agaagau     -    -u    a      u       a   u    u     cau    aaaauuuccaauuucuguccuccgcuaggccgcuacugcauuuauguuugcuugcucacaaaacggagggauuugugagaguuau 
       gggua uggu  ggag caggga gaggcag gca ggga ggggc   caac                                                                                     c
       ||||| ||||  |||| |||||| ||||||| ||| |||| |||||   ||||                                                                                      
       cccgu gcca  ccuC GUCCCU CUCCGUC CGU cccu cuucg   guug                                                                                     a
---cguu     u    cc    G      U       A   C    c     -uu    ugguccuguggucgacucgagagucgggagaguccaguccgguaguggugaaguggucccuccguggaagaaacaagaaagacgg 

>sof-MIR408c (-122.70)   [sof-miR408c:247-267]

agaagau     -    -u    a      u       a   u    u     cau    aaaauuuccaauuucuguccuccgcuaggccgcuacugcauuucuguuugcuugcucacaaaacggagggauuugugagaguuau 
       gggua uggu  ggag caggga gaggcag gca ggga ggggc   caac                                                                                     c
       ||||| ||||  |||| |||||| ||||||| ||| |||| |||||   ||||                                                                                      
       cccgu gcca  ccuC GUCCCU CUCCGUC CGU cccu cuucg   guug                                                                                     a
---cguu     u    cc    G      U       A   C    c     -uu    ugguccuguggucgacucgagagucgggagaguccaguccgguaguggugaaguggucccuccguggaagaaacaagaaagacgg 

>sof-MIR408d (-82.40)   [sof-miR408d:176-196]

-ggaa    uguu  auu    a      c       a   u   a     c  u     aaauuuccaauuuccguuugcuugcucacaaaacgaaggugccugccu 
     ggua    ug   ggag caggga gaggcag gca ggg ugggg ca caaca                                                c
     ||||    ||   |||| |||||| ||||||| ||| ||| ||||| || |||||                                                c
     ccgu    ac   ccuC GUCCCU CUCCGUC CGU ccc accuu gu guugu                                                c
cguuc    ugcc  --c    G      U       A   C   -     c  u     gguccuguggucgacucgagagucgggagaguccaguccgguaguggu 

>sof-MIR408e (-105.50)   [sof-miR408e:244-264]

agaagau     -    -u    a      u   g   a   u    -ug    cau     aa  uu   auuucuguccuccgcuaggccgcuacugcauuuauguuugcuugcucacaaaacggagggauuugugagaguua 
       gggua uggu  ggag caggga gag cag gca ggga   aggc   caaca  au  cca                                                                          u
       ||||| ||||  |||| |||||| ||| ||| ||| ||||   ||||   |||||  ||  |||                                                                           
       cccgu gcca  ccuC GUCCCU CUC GUC CGU Cccu   uucg   guugu  ug  ggu                                                                          c
---cguu     u    cc    G      U   A   A   -    uca    -uu     cc  -u   cgacucgagaguaggcagaguccaguccgguaguggugaaguggucccuccguggaagaaacaagaaagacgga 

>gma-MIR156d (-53.70)   [gma-miR156d:21-41]

--cuacuu   aauu     u U         -              u  -   u       uuauauaauauauagc 
        ggu    aaggu g UGACAGAAG AUAGAGAGCACaga ga uga augcaua                a
        |||    ||||| | ||||||||| |||||||||||||| || ||| |||||||                 
        ccg    uucca c acugucuuc uaucucucguguuu cu auu uacgugu                g
cuuuaccu   --ac     - u         a              c  c   c       uaaguaguacucaagg 

>gma-MIR156e (-53.40)   [gma-miR156e:21-41]

---a     u -uu  u    cugU           -         u  u  -   a    -  gaa 
    ggagg g   gg gaug    UGACAGAAGAU AGAGAGCAC ga ga uga augc au   a
    ||||| |   || ||||    ||||||||||| ||||||||| || || ||| |||| ||    
    ccucc c   uc cuac    acugucuucug ucucucgug uu cu acu uacg ua   g
cucc     - ucu  -    ---u           a         u  c  c   c    g  agg 

>gma-MIR156c (-47.40)   [gma-miR156c:146-166]

-----ac     cac    cuuau      ccg      ag  u    ac   u      ca  aaaaugcacagauccugauggagauugcacagg 
       uugac   uagg     cucuuu   uuucug  ca gcau  uca ucacag  uc                                 g
       |||||   ||||     ||||||   ||||||  || ||||  ||| ||||||  ||                                  
       aacug   gucc     GAGAGA   GAAGAC  GU Ugug  agu aguguu  ag                                 c
ccuagga     --a    aaCAC      -UA      -A  -    -a   u      uc  gucucaacucauaccacguuagaucguagugga 

>gma-MIR159a (-89.98)   [gma-miR159a:175-195]

aauu        uuaugaa            ga       uu    aucu    ----   ug   u     g     c      uc      uu     -  ucaaua 
    aaagggga       guggagcuccuu  aguccaa  gagg    uacu    ggg  aau gagcu cuuag uaugga  ccacag  cuacc ca      a
    ||||||||       ||||||||||||  |||||||  ||||    ||||    |||  ||| ||||| ||||| ||||||  ||||||  ||||| ||       
    uuucuucu       cAUCUCGAGGGA  UUAGGUU  uucc    auga    ucc  uua uucga ggguu auaccu  gguguu  gaugg gu      g
-ucu        cuuccca            AG       Uc    aauu    uauu   gu   c     g     u      uc      cu     u  uuucgu 

>gma-MIR160 (-55.30)   [gma-miR160:21-41]

    c  ac     ugu      C       CU          ug     c    c  a 
caug au  auaug   augUGC UGGCUCC  GUAUGCCAuu  uagag ucau ga g
|||| ||  |||||   |||||| |||||||  ||||||||||  ||||| |||| ||  
guac ua  uauac   uauacg accgagg  uaugcgguag  guuuc agua cu c
    a  ca     -uu      a       ag          gu     c    a  a 

>gma-MIR166a (-62.12)   [gma-miR166a:107-127]

-ac      uu   cuu   a        uu      cu   g   c  -ucuuca        --uu      a 
   ggaagc  ugu   uug ggggaaug  gucugg  cga gac cu       ucuugauc    guguag c
   ||||||  |||   ||| ||||||||  ||||||  ||| ||| ||       ||||||||    ||||||  
   ccuucg  aua   aac CCCCUUAC  CGGACC  GCU uug ga       ggaacugg    cguauc u
aaa      -u   -uu   c        UU      AG   g   u  uacauaa        uguu      a 

>gma-MIR166b (-63.77)   [gma-miR166b:128-148]

gcuu        ga   u a a      uu      cu     -    --ggaggagg      a    aguacugagaucagug 
    gcaaaggu  ggu g g ggaaug  gucugg  cgagg ucau          aggagg guag                a
    ||||||||  ||| | | ||||||  ||||||  ||||| ||||          |||||| ||||                 
    cguuuuca  cca c C CCUUAC  CGGACC  GCUcu agua          uucucc cauu                a
uuuu        ac   c - C      UU      AG     u    aaaaaacaca      -    uaaagguaaccuuuga 

>gma-MIR167a (-54.20)   [gma-miR167a:21-41]

gaa    g   --     aa     A    - -            ccuuu      aga   c 
   guuc caa  aggaa  agUGA GCUG C CAGCAUGAUCUA     gguuag   gcu a
   |||| |||  |||||  ||||| |||| | ||||||||||||     ||||||   |||  
   cagg guu  uccuu  ucacu cgac g gucguacuggau     ccaauc   uga a
---    g   ua     cc     c    a u            caguc      --g   g 

>gma-MIR167b (-53.30)   [gma-miR167b:21-41]

aagg   -a   --     aa     A   -  -             cuuu        ggag g 
    guc  caa  aggaa  agUGA GCU GC CAGCAUGAUCUAg    gguuagug    c a
    |||  |||  |||||  ||||| ||| || |||||||||||||    ||||||||    |  
    cag  guu  uccuu  ucacu cga cg gucguacuggauc    ccaaucgu    g g
----   ag   ua     cc     c   u  u             acuc        --ga a 

>gma-MIR168 (-66.20)   [gma-miR168:19-39]

---    gu        ua     C          U     A       uc    -  --aa  ga 
   cacu  gcggucuc  auUCG UUGGUGCAGG CGGGA ccgguuu  gcgc gg    ug  g
   ||||  ||||||||  ||||| |||||||||| ||||| |||||||  |||| ||    ||   
   gugg  cgccggag  uaagu aacuacguuc gcccu gguuaag  cgcg cc    gc  g
caa    --        gc     c          c     a       -c    g  gcug  ga 

>gma-MIR172a (-67.30)   [gma-miR172a:120-140]

uuaac       auuu  g                     a  -- g    -c  ag     --  g   g  uugau   au 
     agucguu    gc gauguagcaucaucaagauuc ca  u caag  gc  guggu  gg ugg ac     gca  c
     |||||||    || ||||||||||||||||||||| ||  | ||||  ||  |||||  || ||| ||     |||  u
     ucagcaa    cg cUACGUCGUAGUAGUUCUAAG gu  a guuu  ug  uaccg  cc acc ug     cgu  a
-cacu       auac  a                     A  ca g    uc  ga     aa  g   g  ----u   ga 

>gma-MIR172b (-67.20)   [gma-miR172b:114-134]

uugac       guuu  g                     a    -    -u  -a       g  a uau  u   au 
     agucguu    gc gauguagcaucaucaagauuc caug caaa  ga  ggugggu gg c   ga gca  c
     |||||||    || ||||||||||||||||||||| |||| ||||  ||  ||||||| || |   || |||  c
     ucggcaa    cg cUACGUCGUAGUAGUUCUAAG gugu guuu  cu  cuaccua cc g   cu cgu  a
-aauu       auac  a                     A    a    uu  gg       a  - --u  -   ga 

>gma-MIR319a (-93.20)   [gma-miR319a:169-188]

cguuga    ccu    -u   a     uu          cuc     u   ag            a -  g   ac       uc  aa           agcg 
      agac   aagg  aag gagcu  cuucagucca   auggg gac  uaagauucaauu g cu ccg  ucauuca  ca  uguugagugua    a
      ||||   ||||  ||| |||||  ||||||||||   ||||| |||  |||||||||||| | || |||  |||||||  ||  |||||||||||     
      ucug   uucc  uuC CUCGA  GAAGUCAGGU   ugucc uug  auucuaaguuaa c ga ggc  aguaagu  gu  acgacucauau    a
-cauuc    -uu    uu   C     GG          Uca     u   -a            a a  g   gu       ga  ag           aaau 

>gma-MIR319b (-82.00)   [gma-miR319b:170-189]

uaaguccuaag   c  --u   a     uu          cu      u   aa     uu      a -  g   ac       uc  aa         aaag ga 
           cga gg   aag gagcu  cuucagucca  uauggg gac  uaaga  ucaauu g cu ccg  ucauuca  ca  ugcugagug    c  a
           ||| ||   ||| |||||  ||||||||||  |||||| |||  |||||  |||||| | || |||  |||||||  ||  |||||||||    |  g
           guu uc   uuC CUCGA  GAAGUCAGGU  augucc uug  auucu  aguuaa c ga ggc  aguaagu  gu  acgacucau    g  a
---ucuucuaa   u  uuu   C     GG          Uc      u   -a     -u      a a  g   gu       ga  aa         ---a aa 

>gma-MIR156a (-57.70)   [gma-miR156a:21-40]

-cacacc   u  a a            -     -        au   agug   u       a 
       aga ug g gaggcUGACAGA AGAGA GUGAGCAC  gcu    gua uuguaug g
       ||| || | |||||||||||| ||||| ||||||||  |||    ||| |||||||  
       ucu ac c cuucgacugucu ucucu cacucgug  ugg    cgu aacauac g
cauuuuu   u  - -            a     u        cg   ---g   u       g 

>gma-MIR396a (-61.90)   [gma-miR396a:21-41]

uca       c       uc            C          uccaaagaguuccuuugcaugcaugc 
   uggcucu uuuguau  UUCCACAGCUUU UUGAACUGca                          c
   ||||||| |||||||  |||||||||||| ||||||||||                          a
   acuggga agacaua  agggugucgaaa aacuuggcgu                          u
-ca       u       ga            u          uuuguucuaaacccucauucucacgg 

>gma-MIR396b (-49.30)   [gma-miR396b:21-41]

cuca  u    ----      c                   A     uau  aucuuau   u  cca 
    ag ccug    gucaug uuUUCCACAGCUUUCUUGA CUUcu   gc       auc cu   c
    || ||||    |||||| ||||||||||||||||||| |||||   ||       ||| ||    
    uc ggac    cgguau agagggugucgaaagaacu gaaga   cg       uag ga   c
----  -    uuaa      a                   c     ucc  --aauuu   -  ccu 

>gma-MIR398a (-50.90)   [gma-miR398a:77-97]

---------------        a    a               cu    ug a  gc       u 
               cucggagg guga ucugagaacacaagg  gguu  c cu  uauauca c
               |||||||| |||| |||||||||||||||  ||||  | ||  ||||||| u
               gaguUUCC CACU GGACUCUUGUGUuuc  uuaa  g ga  auauggu a
uacaguuguccaacc        C    -               au    gu -  --       u 

>gma-MIR398b (-56.90)   [gma-miR398b:96-116]

-a   caaau    uau        a   g                cu    ug a  gc       uga 
  guc     gguu   cucagagg gug aucugagaacacaagg  gguu  c cu  uauauua   u
  |||     ||||   |||||||| ||| ||||||||||||||||  ||||  | ||  |||||||    
  cag     ccaa   gaguUUCC CAC UGGACUCUUGUGUuuc  uuaa  g ga  auauggu   c
ua   -uugu    -cc        C   -                au    gu -  --       uag 

>gma-MIR319c (-104.60)   [gma-miR319c:183-202]

uug       -a      u           cc    c   uu        uaacgaaagauuggguugcugaauuaacugcuagcucacacauucauucauacaauaguau 
   ggaggga  agagag gaaggagcuuc  ucag cca  cauggaga                                                             u
   |||||||  |||||| |||||||||||  |||| |||  ||||||||                                                              
   ccucccu  ucuuuu cuUCCUCGAGG  AGUC GGU  gugucucu                                                             c
--a       cg      u           AA    A   Uc        uucucccaacguuauaucuaugauauaugagggcgaaguaaguguguuauaaugggauuaa 

>gma-MIR156b (-50.60)   [gma-miR156b:21-41]

ug       auaucuc   u       -A       A     -a     g  u   u    g 
  augugag       aug UGACAGA  GAGAGAG GCACA  cccgg aa ggc aaag a
  |||||||       ||| |||||||  ||||||| |||||  ||||| || ||| ||||  
  uacacuu       uac acugucu  uucucuc cgugu  ggguu uu ccg uuuc g
cg       ---acac   u       cc       c     ga     g  u   -    u 

>gma-MIR169a (-57.20)   [gma-miR169a:21-41]

a            agu   gC       G UG           uuauu   --  cu   g 
 agaggaagagag   gau  AGCCAAG A  ACUUGCCGGcg     auu  ug  cau u
 ||||||||||||   |||  ||||||| |  |||||||||||     |||  ||  |||  
 ucuucuucucuc   uug  ucgguuu u  ugaacggccgu     ugg  ac  gua u
-            guu   ua       g gu           uccuu   cc  uc   c 

>zma-MIR171d (-53.60)   [zma-miR171d*:23-43] [zma-miR171d:82-102]

agaa       u   a  au         U       C       uugaa    ----aau  a 
    auggaag gua cu  ggUGUUGGC CGGCUCA UCAGAag     gccg       cc a
    ||||||| ||| ||  ||||||||| ||||||| |||||||     ||||       ||  
    uacuuuc cau ga  CUAUAACCG GCCGAGU AGUcuuu     cggc       gg a
gucg       u   -  cu         U       U       ----g    cgucgau  u 

>zma-MIR171f (-72.11)   [zma-miR171f*:23-43] [zma-miR171f:118-138]

uugguuguu    -     -ag  C                     -------   -    g  cgcggguggcuuauagcuua 
         ggcu gagag   ug GAUGUUGGCAUGGCUCAAUCa       acu cgcc gc                    a
         |||| |||||   || |||||||||||||||||||||       ||| |||| ||                     
         ccga cucuu   AC CUAUAACCGUGCCGAGUUagu       uga gcgg cg                    u
-----auau    u     cca  A                     uaauuug   c    g  uggagcuagcuuacgcgucu 

>zma-MIR394a (-50.61)   [zma-miR394a:21-40] [zma-miR394a*:90-109]

--  c      uga g      -      U C           ucucgccgaucuu      --a u 
  gg gcuuac   a aguucc UUGGCA U UGUCCACCUCC             gcagaa   g u
  || ||||||   | |||||| |||||| | |||||||||||             ||||||   |  
  uc cggaug   u ucgagG AACCGU A ACGGGUGGAgg             ugucuu   c u
cc  -      --- g      U      C U           -uuuuuuuuacgu      gac a 

>zma-MIR394b (-52.50)   [zma-miR394b:21-40] [zma-miR394b*:86-105]

-u  c      u ag      -      U C           cuucuu     -ucuu       
  gg gcuuac g  aguucc UUGGCA U UGUCCACCUCC      gacga     gcagaa 
  || |||||| |  |||||| |||||| | |||||||||||      |||||     ||||| a
  uc cggaug c  ucgagG AACCGU A ACGGGUGGAgg      uuguu     cguuug 
cc  -      - -g      U      C U           -uuugu     uuuuu       

>zma-MIR395b (-59.60)   [zma-miR395b*:23-44] [zma-miR395b:75-95]

gcaac    ug  u               A               accu     caaua 
     guuu  ug uacuaggaGUUCCCU CAAGCACUUCACAAu    uggcu     a
     ||||  || ||||||||||||||| |||||||||||||||    |||||      
     cgaa  ac augguuCUCAAGGGG GUUUGUGAAGUGuug    accgg     a
-uuua    gu  u               -               ----     aaauu 

>zma-MIR395c (-58.54)   [zma-miR395c*:23-44] [zma-miR395c:99-119]

ucuug     uucu c           C G            - -       ------------c   a    cgg 
     guugg    c cuuggaGUUCC U CAAACACUUCAC C Agcuagg             cau gugc   c
     |||||    | ||||||||||| | |||||||||||| | |||||||             ||| ||||    
     cgacc    g ggauCUCAAGG A GUUUGUGAAGUG g ucgaucc             gua cacg   c
-guaa     uauu u           - G            u a       acuagucuauguu   a    uuc 

>zma-MIR395a (-82.10)   [zma-miR395a*:23-45] [zma-miR395a:110-130]

uauug        u    ug         U     C      G U       c     aguuuaa    acug      c 
     guugguug cacc  gaGUUCUCC CAAAC ACUUCA U gcugcac uagcu       uggc    ugcuug g
     |||||||| ||||  ||||||||| ||||| |||||| | ||||||| |||||       ||||    ||||||  
     cgacuaac gugg  CUCAAGGGG GUUUG UGAAGU a cgaugug gucga       gccg    gcgaac u
-uuaa        u    gu         -     -      G u       u     ------g    ----      g 

>zma-MIR396b (-69.90)   [zma-miR396b:21-41] [zma-miR396b*:99-119]

aga      -       ga c            C           cucucagaggagcggcagcuuca 
   uggccu ucuuugu  u UUCCACAGCUUU UUGAACUGcau                       a
   |||||| |||||||  | |||||||||||| |||||||||||                       c
   accgga agagacg  A AGGGUGUCGAAA AACUUGacgua                       u
--g      g       uc A            U           cguggacgacuacgcccaccucc 

>zma-MIR396a (-70.10)   [zma-miR396a:21-41] [zma-miR396a*:100-120]

aca     -   c    c  c            C      UGcaugccgccggcugguggaugcugcgc 
   uggcc cuc uugc gu UUCCACAGCUUU UUGAAC                             g
   ||||| ||| |||| || |||||||||||| ||||||                              
   accgg gag gacg cA AGGGUGUCGAAA AACUUG                             c
--c     a   a    u  A            U      acgcggagaacccuagcuggccuuaaguu 

>zma-MIR399a (-52.50)   [zma-miR399a*:23-43] [zma-miR399a:84-104]

ugugaag     -ga    ca   U           C     -C     c   cca a    cu 
       agggu   gaau  caG GCGGUUCUCCU UGGCA  Gaagg ugg   g gcag  u
       |||||   ||||  ||| ||||||||||| |||||  ||||| |||   | ||||   
       uccca   cuua  GUC CGUUAAGAGGA ACCGU  cuucc acc   c cguu  a
--uaacg     aca    cc   C           A     uc     c   --a -    au 

>zma-MIR399c (-108.30)   [zma-miR399c*:23-43] [zma-miR399c:168-188]

ugc         -au    ua       CG             A   -ga    acacaucaucagucgagagaguaagcucgcugcgugcucgccggccuggga 
   uugcugagc   gaau  caGGGUA  UCUCCUUUGGCAC gca   augc                                                   g
   |||||||||   ||||  |||||||  ||||||||||||| |||   ||||                                                    
   agcgacucg   cuua  GUCCCGU  AGAGGAAACCGUg cgu   uaug                                                   c
--u         gau    gc       UA             -   aua    ccgucgacgacaaguacguagacguggcggcgguaaaccggacgcugaagg 

>zma-MIR399b (-56.90)   [zma-miR399b*:23-43] [zma-miR399b:83-103]

guagcu      --gc    ca   UG          C     U --       u    ga gc 
      cagggu    gaau  caG  CAGCUCUCCU UGGCA G  aaggcug gaga  g  a
      ||||||    ||||  |||  |||||||||| ||||| |  ||||||| ||||  |   
      gucccg    cuua  GUC  GUCGAGAGGA ACCGU c  uuccggu cuuu  c  u
---aac      auua    cc   CU          A     c cg       -    aa ag 

>zma-MIR399d (-55.50)   [zma-miR399d*:18-38] [zma-miR399d:86-106]

--u  a   --ga    ca   U UG        C      Gaa    c  cu ag    ac   c 
   ca ggu    gaau  caG G  GCUCUCCU UGGCAU   ggcg gg  g  aggc  gaa a
   || |||    ||||  ||| |  |||||||| ||||||   |||| ||  |  ||||  |||  
   gu ccg    cuua  GUC C  CGAGAGGA ACCGUa   ccgu cc  c  uccg  cuu g
aac  c   auug    cc   C GU        A      --a    -  -- cu    gu   u 

>zma-MIR399e (-58.30)   [zma-miR399e*:23-43] [zma-miR399e:85-105]

augcc      --    a   u      UU     UC         ---------a    u    u  c 
     uaagcu  gucc guu caGGGC  CUCUU  UUGGCAGGg          agca gaga gc a
     ||||||  |||| ||| ||||||  |||||  |||||||||          |||| |||| ||  
     auucga  cagg caa GUCCCG  GAGAG  AACCGUcuc          ucgu cucu cg u
---gu      cu    a   u      UU     GA         ccaacuucuc    -    -  a 

>zma-MIR399f (-48.00)   [zma-miR399f*:23-44] [zma-miR399f:66-86]

cagga      cc  c     u      C  C           ---Au    ga 
     ugugca  ug auuuc GGGCAA UU UCCUUUGGCAG     gcgc  g
     ||||||  || ||||| |||||| || |||||||||||     ||||   
     acacgu  ac uaagG CCCGUU AA AGGAAACCGUc     cgug  a
-acga      cu  u     C      U  -           gucac    ua 

>zma-MIR156j (-77.50)   [zma-miR156j:21-41] [zma-miR156j*:86-108]

--  a    a   cg  a          -A    -          --a   -a   cc       a 
  cg gugg ccu  gg gcgaUGACAG  AGAG AGAGAGCACA   ccc  gca  agcgagg a
  || |||| |||  || ||||||||||  |||| ||||||||||   |||  |||  ||||||| a
  gc cacc gga  cc cgCUACUGUC  UCUC UCUCUCGUgu   ggg  cgu  ucgcucc a
aa  -    -   ca  -          AC    G          gcc   ag   cu       g 

>zma-MIR159a (-106.00)   [zma-miR159a*:23-43] [zma-miR159a:207-227]

ucgaugcuu      -u  a           A   U     U  ag     uuc   -a    u   u c   g    u     guuc    uau         ucauguguauauauguaaucc 
         uggguu  ga gcgGAGCUCCU UCA UCCAA GA  ggucg   cga  gggc ggu c gcu cucg ucaug    ccac   ccuaucuca                     a
         ||||||  || ||||||||||| ||| ||||| ||  |||||   |||  |||| ||| | ||| |||| |||||    ||||   |||||||||                     u
         accuag  cu cGUCUCGAGGG AGU AGGUU cu  ccggu   guu  cccg cca g cga gagc aguac    ggug   ggauagagu                     g
--ccucccc      uc  a           A   U     U  cg     --c   cc    -   c u   g    c     guuu    uuc         uucugcucucuuugggagggg 

>zma-MIR159b (-103.64)   [zma-miR159b*:23-43] [zma-miR159b:182-202]

uagac     -  uc     --    U           A    UAAa        cu  -u   ug  a     g    u     guuc    ugu         -u  gagaga 
     ggucu gg  uuaag  gcgG GCUCCCUUCAA CCAA    cggucgau  ga  ggg  gu cagcu cucg ucaug    ccac   cccaucuca  ca      g
     ||||| ||  |||||  |||| ||||||||||| ||||    ||||||||  ||  |||  || ||||| |||| |||||    ||||   |||||||||  ||       
     ucaga cc  gguuc  cGUC CGAGGGAAGUU GGUU    gccaguug  cu  ccc  ca gucga gagc aguac    ggug   ggguagagu  gu      a
----u     a  cu     ua    U           A    Uguc        --  uc   ug  c     g    c     guuu    uuc         uc  agagag 

>zma-MIR159c (-110.30)   [zma-miR159c*:23-43] [zma-miR159c:178-198]

--au   ua   a     auc  a                  UC  g         ----    c    g  g  g    u     g      -cucu       caa  -  c 
    gau  aga aggcg   ga GAGCUCCCUUCGAUCCAA  Ca gaggggaag    uggu gguu ca cu ccgg ucaug auaccu     ggugcag   ug gc g
    |||  ||| |||||   || ||||||||||||||||||  || |||||||||    |||| |||| || || |||| ||||| ||||||     |||||||   || ||  
    cug  ucu ucugu   cU CUCGAGGGAAGUUAGGUU  gu cucccuuuc    accg ccga gu ga ggcc aguac uguggg     ucacguc   ac cg c
cugu   --   g     -cu  C                  -C  g         uacu    c    -  a  g    c     g      uacgu       ucc  u  u 

>zma-MIR159d (-107.80)   [zma-miR159d*:23-43] [zma-miR159d:178-198]

--    -   ugcc  uc  uc  a                  UC  g         ----       cug ag  g    u     g      -cucu       caau   cg 
  aaga aga    ga  ga  ga GAGCUCCCUUCGAUCCAA  Ca gagggaaag    uggucgg   c  cu ccgg ucaug auaccu     ggugcag    ggc  a
  |||| |||    ||  ||  || ||||||||||||||||||  || |||||||||    |||||||   |  || |||| ||||| ||||||     |||||||    |||   
  uucu ucu    cu  cu  cU CUCGAGGGAAGUUAGGUU  gu cucccuuuc    accagcc   g  ga ggcc aguac uguggg     ucacguc    ucg  g
ua    c   ----  cu  cu  C                  -C  g         uacu       -aa ca  g    c     g      uacgu       -cac   ua 

>zma-MIR319a (-96.20)   [zma-miR319a*:23-42] [zma-miR319a:171-190]

gguucauguuuucucu     a    U            CU ug       u         --ca      g   ac          ac         a   ug  c 
                ggaag GAGC CUCUUCAGUCCA  C  aaauggc guaggguuu    uuagcu ccg  ucauccauuc  cugccaaga cca  ga a
                ||||| |||| ||||||||||||  |  ||||||| |||||||||    |||||| |||  ||||||||||  ||||||||| |||  ||  
                uuuuC CUCG GGGAAGUCAGGU  g  uuugucg caucucgaa    aaucga ggc  ggugggugag  gaugguucu ggu  cu g
-ucgcaaacucguuug     C    U            Ug ug       -         cuaa      g   gc          cc         -   --  g 

>zma-MIR319c (-103.80)   [zma-miR319c*:23-42] [zma-miR319c:178-197]

--g    au   uucugug    a    U            CU ua       u         --ca      g   ac          ac         a   u  g aag 
   guuu  ggc       gaag GAGC CUCUUCAGUCCA  C  aaauggc guaggguuu    uuagcu ccg  ucauccauuc  cugccaaga cca gg c   c
   ||||  |||       |||| |||| ||||||||||||  |  ||||||| |||||||||    |||||| |||  ||||||||||  ||||||||| ||| || |    
   caaa  ccg       cuuC CUCG GGGAAGUCAGGU  g  uuugucg caucucaaa    aaucga ggc  ggugggugag  gaugguucu ggu cu g   g
uca    -c   --uuuaa    C    U            Ug ca       -         cuaa      g   gc          cc         -   -  g aug 

>zma-MIR319b (-104.30)   [zma-miR319b*:23-43] [zma-miR319b:175-194]

gac     u -  -u  au   a A    GU           CU            ua        ----   g  g   ac        c  ca   c    aaacgg c 
   gacga g gc  gg  gga g GAGC  CCUUCAGUCCA  Caggggcggugc  gggucgaa    uua cu ccg  ucauucac ca  ugc aagc      c a
   ||||| | ||  ||  ||| | ||||  |||||||||||  ||||||||||||  ||||||||    ||| || |||  |||||||| ||  ||| ||||      |  
   uuguu c cg  cc  ccu C CUCG  GGAAGUCAGGU  guuucugccacg  ucuagcuu    aau ga ggc  aguaagug gu  acg uucg      g u
---     c u  cu  cu   C -    UG           Uc            -c        cgaa   g  g   ga        a  ag   u    accaaa g 

>zma-MIR319d (-103.70)   [zma-miR319d*:22-42] [zma-miR319d:174-193]

uggucgccggcc    -   a A    GU           CU            ua        ----   g  g   ac        c  ca   c    aaa  --g c 
            ggau gga g GAGC  CCUUCAGUCCA  Caggggcggugc  gggucgga    uua cu ccg  ucauucac ca  ugc aagc   cg   c a
            |||| ||| | ||||  |||||||||||  ||||||||||||  ||||||||    ||| || |||  |||||||| ||  ||| ||||   ||   |  
            ccua ccu C CUCG  GGAAGUCAGGU  guuucugccacg  ucuagcuu    aau ga ggc  aguaagug gu  acg uucg   gc   g u
-uuuguuccuuu    g   C -    UG           Uc            -c        cgaa   g  g   ga        a  ag   c    --a  aaa g 

>zma-MIR166k (-87.70)   [zma-miR166k*:23-43] [zma-miR166k:129-149]

--gc    u  g  ua              UU      CU  GG            gau    ucauaacauau   u  gu     ua   u 
    augc cg gu  ggucagggGGAUUG  GUCUGG  CG  Gucuccggucga   cgau           acg ac  gcuuc  gcc u
    |||| || ||  ||||||||||||||  ||||||  ||  ||||||||||||   ||||           ||| ||  |||||  ||| g
    uacg gc ua  ccaguuUCCCUAAC  CGGACC  GC  uagaggccagcu   gcug           ugc ug  cgagg  cgg c
ggau    -  g  --              UU      AG  Uu            ---    ----------u   -  au     --   c 

>zma-MIR166j (-64.90)   [zma-miR166j*:23-44] [zma-miR166j:115-135]

caagu  a    -ua          U   UUU         A         caca     gaaa       ---uc  cuug 
     ug agau   gguuaaggGG UUG   GUCUGGUUC AGGucgcca    gcagg    acccauu     gc    a
     || ||||   |||||||||| |||   ||||||||| |||||||||    |||||    |||||||     ||     
     ac ucug   ucaauuUCCC AAC   CGGACCAGG Ucuaguggu    ugucc    uggguag     cg    a
--uau  g    cga          U   -UU         C         ----     -aug       uacca  uacg 

>zma-MIR167e (-63.40)   [zma-miR167e:21-41] [zma-miR167e*:81-102]

uug        u u     c         -             gguguccacagcauau 
   gugugucc c aguag UGAAGCUGC CAGCAUGAUCUGa                a
   |||||||| | ||||| ||||||||| |||||||||||||                u
   cacgcagg g ucguC ACUUUGACG GUCGUACUAGacu                a
-ca        u c     U         U             agcgaucgacgaaggu 

>zma-MIR167f (-60.90)   [zma-miR167f:21-41] [zma-miR167f*:81-102]

-c    a  uu    a    c         -            -     --uc     cu g 
  gugc cc  auua gcag UGAAGCUGC CAGCAUGAUCUG aucuu    guuua  g c
  |||| ||  |||| |||| ||||||||| |||||||||||| |||||    |||||  |  
  cacg gg  uaau cguC ACUUUGACG GUCGUGCUAGac uagaa    uaggu  c a
ga    a  -u    -    C         C            c     ucca     uu a 

>zma-MIR167g (-125.80)   [zma-miR167g:21-41] [zma-miR167g*:207-226]

agug    -a    g   u           C              a  augguggugguauauguaagauggauguaaucuauacuacuaccggccccugucacucucucucucucccccgu 
    gugc  ccac agu ggUGAAGCUGC AGCAUGAUCUGguu ug                                                                          c
    ||||  |||| ||| ||||||||||| |||||||||||||| ||                                                                          c
    cacg  ggug ucg CUACUUUGAUG UCGUACUGGaccag ac                                                                          c
--ua    cc    g   u           -              g  cacgaguaauuaaugggagagagagagagggaaggggagaguagaaccuaagcagcuagguauauacugucagu 

>zma-MIR167h (-87.40)   [zma-miR167h:21-41] [zma-miR167h*:107-125]

acu      -         gu         C            c  cucagacgccggcgggcgucucgagug 
   uugcug cugugagag  UGAAGCUGC AGCAUGAUCUGg ug                           c
   |||||| |||||||||  ||||||||| |||||||||||| ||                            
   aacgac gacgcucuc  ACUUCGACG UUGUACUAGacc ac                           u
--a      c         uC         -            -  uuagguucgcaguggcugcuagcucgc 

>zma-MIR167i (-76.74)   [zma-miR167i:21-41] [zma-miR167i*:94-112]

acu        -       cu         C            cuacucaaa        gc uccca 
   ucgcuggu gugagag  UGAAGCUGC AGCAUGAUCUGg         cgccgccg  c     a
   |||||||| |||||||  ||||||||| ||||||||||||         ||||||||  |      
   agcgacca cgcucuc  ACUUCGACG UUGUACUAGacc         gcgguggc  g     g
--a        a       uC         -            ----acuuc        ua cucgu 

>zma-MIR168a (-65.70)   [zma-miR168a:21-41] [zma-miR168a*:67-86]

gaa  cg     c   g gc             AU     C   ccg    g 
   gc  cgccg cuc g  UCGCUUGGUGCAG  CGGGA ccg   cccg c
   ||  ||||| ||| |  |||||||||||||  ||||| |||   |||| c
   cg  gcggc gag c  AGUGAACCACGUU  GCCCu ggc   gggc g
-ag  ag     c   g uA             CC     a   --a    a 

>zma-MIR168b (-68.90)   [zma-miR168b:21-41] [zma-miR168b*:67-86]

uc   c      u   g gc             AU     C   ccg    g 
  cgc gcgccg cuc g  UCGCUUGGUGCAG  CGGGA ccg   cccg c
  ||| |||||| ||| |  |||||||||||||  ||||| |||   |||| c
  gcg cgcggc gag c  AGUGAACUACGUU  GCCCu ggc   gggc g
-a   a      c   g uA             CC     a   --a    a 

>zma-MIR169c (-72.10)   [zma-miR169c:21-41] [zma-miR169c*:96-117]

au    u       -   a  C          -         Gcuccuggaaccuggaggcgucucag 
  gagg agagaac ggg ug AGCCAAGGAU GACUUGCCG                          c
  |||| ||||||| ||| || |||||||||| |||||||||                           
  cucc ucucuug ucc AC UCGGUUCCUG CUGAACGGc                          u
-u    u       a   -  A          U         ugauucaagauucggugucgugucgu 

>zma-MIR169f (-77.00)   [zma-miR169f:21-41] [zma-miR169f*:113-133]

--  c       a    uuc            U   U      g -         augggcuauggcuacaugccug 
  ac agagcug uucg   agUAGCCAAGGA GAC UGCCUA g uauauaugc                      a
  || ||||||| ||||   |||||||||||| ||| |||||| | |||||||||                       
  ug ucucggc aggc   UCAUCGGUUCCU CUG ACGGau u auauguacg                      g
ac  a       g    ---            U   U      g g         agucgcaguguucucugaccga 

>zma-MIR169g (-64.10)   [zma-miR169g:21-41]

   a  --u    ugc   u   -         U    U       uggu    c   uu c   --u  u   u 
cag gc   agcc   cuc ggU AGCCAAGGA GACU GCCUAca    cucg uag  c ggu   gu gca g
||| ||   ||||   ||| ||| ||||||||| |||| |||||||    |||| |||  | |||   || |||  
guc cg   ucgg   gag ccg ucgguuccu cugg cgggugu    gggu guc  g ccg   ca cgu c
   -  uuc    --u   u   a         -    -       --uu    c   cu a   uau  c   a 

>zma-MIR169h (-64.50)   [zma-miR169h:21-41]

     a     ugc   -uga          U    U       uc  uuguu        a   ga 
caaua gggcc   cuc    UAGCCAAGGA GACU GCCUAug  cu     uacaaagg uca  a
||||| |||||   |||    |||||||||| |||| |||||||  ||     |||||||| |||   
guuau cccgg   gag    aucgguuccu cuga cggaugc  gg     guguuucc ggu  u
     c     --u   uccg          -    -       uu  ---uu        a   gu 

>zma-MIR169i (-85.10)   [zma-miR169i:21-41] [zma-miR169i*:155-172]

- a        gu  c  -u   -         U    U       u cu     -  cu c     u  -aa gac    -  gu     c   -  ag g 
 g ugagagug  ag uc  ggU AGCCAAGGA GACU GCCUGug g  ggcca cg  c ccuca gc   g   cauc uc  gucga cga cg  c a
 | ||||||||  || ||  ||| ||||||||| |||| ||||||| |  ||||| ||  | ||||| ||   |   |||| ||  ||||| ||| ||  |  
 c auucucac  uc ag  ccG UCGGUUCCU CUGA CGGgcac c  cuggu gc  g ggggu cg   c   guag ag  uagcu gcu gc  g g
g c        --  -  uc   A         -    -       u -u     u  au u     u  aag --a    g  ag     a   a  ga c 

>zma-MIR169k (-77.60)   [zma-miR169k:21-41] [zma-miR169k*:97-114]

-c         acu    u   -         U    U       gc uc  -   guc        cg 
  gaugagagc   gcuc ggU AGCCAAGGA GACU GCCUGug  c  ca uca   gcagagga  c
  |||||||||   |||| ||| ||||||||| |||| |||||||  |  || |||   ||||||||   
  cuacucucg   cgag ccG UCGGUUCCU CUGA CGGacgc  g  gu ggu   cgucuucu  u
ac         --g    c   A         -    -       ua cu  u   guu        ug 

>zma-MIR169j (-72.10)   [zma-miR169j:21-41] [zma-miR169j*:116-133]

gcg     -a        a   -         U    U        cu  uu    ug  uu   uc      aaccu  u 
   auaag  gucugucc gaU AGCCAAGGA GACU GCCUGugg  uc  ggcu  gc  ggc  gggcaa     ug g
   |||||  |||||||| ||| ||||||||| |||| ||||||||  ||  ||||  ||  |||  ||||||     ||  
   uauuc  cgggcggg cuG UCGGUUCCU CUGA CGGacacu  ag  ccgg  ug  ccg  cucguu     gc c
---     cc        c   A         -    -        --  cu    --  cu   --      auuuu  a 

>zma-MIR169d (-64.30)   [zma-miR169d:21-41]

gc          --a   a  c          -    -       aaccucucaaugguccacaca 
  aauaggggcc   cuc gg UAGCCAAGGA GACU GCCUAUG                     u
  ||||||||||   ||| || |||||||||| |||| |||||||                     u
  uuauucccgg   gag cu aucgguuccu cuga cggauac                     c
--          aug   a  -          a    a       aggaaacaaauguuuccugga 

>zma-MIR169e (-60.30)   [zma-miR169e:21-41]

gc          --a   a  c          -    -     CGaaccaacacaaagguccacaa 
  aauaggggcc   cuc gg UAGCCAAGGA GACU GCCUA                       u
  ||||||||||   ||| || |||||||||| |||| |||||                       u
  uuauucccgg   gag cu aucgguuccu cuga cggau                       c
--          acg   a  -          a    a     acaggaaacaaauguuuccuagu 

>zma-MIR171c (-47.30)   [zma-miR171c*:23-43] [zma-miR171c:79-99]

ggggaaucgaaaaccuacgg        UG       A     a  cuu c     aaa 
                    gaUAUUGG  CGGUUCA UCAGA ag   g gcucc   g
                    ||||||||  ||||||| ||||| ||   | |||||    
                    CUAUAACC  GCCGAGU AGUuu uc   c cgggg   c
-cguucguuucgcuccugca        GU       C     c  -ac u     acc 

>zma-MIR171j (-68.30)   [zma-miR171j*:23-43] [zma-miR171j:90-110]

-aau  cc     cua    g       A            C      uc        g agagg  a 
    gg  gcgag   gacg ggUAUUG CGCGGUUCAAUU GAgagc  gagcccua c     cc g
    ||  |||||   |||| ||||||| |||||||||||| ||||||  |||||||| |     ||  
    cc  cgcuc   cugc CUAUAAC GUGCCGAGUUAG cucucg  cucggggu g     gg g
cgcu  --     acc    a       C            U      -u        g -----  g 

>zma-MIR171e (-59.90)   [zma-miR171e*:23-43] [zma-miR171e:87-107]

agaa      u    g   u         U       C     c   -   c   c   -  auc 
    auggaa agua cua gaUGUUGGC CGGCUCA UCAGA gac gua gcg gcg ag   a
    |||||| |||| ||| ||||||||| ||||||| ||||| ||| ||| ||| ||| ||    
    uaccuu ucau gau CUAUAACCG GCCGAGU AGUcu uug cgu cgc cgu uc   u
uacg      c    -   u         U       U     -   u   -   -   a  gug 

>zma-MIR171i (-54.50)   [zma-miR171i*:23-43] [zma-miR171i:65-85]

cugguu    -     -ag  c                      ---A   -  g 
      ggcu gagag   ug gaUGUUGGCACGGUUCAAUCAA    ucg cc g
      |||| |||||   || ||||||||||||||||||||||    ||| || c
      ccga cucuu   ac CUAUAACCGUGCCGAGUUAGUu    agu gg c
---gau    u     cca  a                      guuc   u  g 

>zma-MIR171g (-49.00)   [zma-miR171g*:23-43] [zma-miR171g:73-93]

aga   --  gc       ca        A              Cg  ca   ca aa 
   acg  ag  gacaugg  uggUAUUG CUUGGCUCAUCUCU  cc  cac  g  u
   |||  ||  |||||||  |||||||| ||||||||||||||  ||  |||  |   
   ugc  uc  cuguacu  aCUAUAAC GAGCCGAGUGGAGg  gg  gug  c  c
---   ga  ua       uc        C              -a  cc   aa ac 

>zma-MIR172e (-71.30)   [zma-miR172e:135-155]

cagcc    gg    u  ug a ug               a     ugcaugccaacauaaugcgcguguucaugcauccaucgcc 
     agcc  ugau uc  g g  gcaucaucaagauuc cacac                                        g
     ||||  |||| ||  | |  ||||||||||||||| |||||                                        c
     ucgg  acua ag  U C  CGUAGUAGUUCUAAG gugug                                        c
-uaua    ga    u  gu A GU               G     uauguguauauauauauaauauauacuacguacuacgucg 

>zma-MIR166l (-64.90)   [zma-miR166l*:24-43] [zma-miR166l:98-118]

aaagaa      - a      cu         G       A     cuuagguguuaaagcauuauauu 
      cgggag g ggguuu  gGAAUGGAG CUGGUCC AGAuc                       g
      |||||| | ||||||  ||||||||| ||||||| |||||                        
      gcccuc c cccaaa  CCUUACUUC GACCAGG Ucuag                       c
--caca      g a      CU         G       C     aguuuguguuuuggucuuuguuc 

>zma-MIR166m (-73.50)   [zma-miR166m*:23-43] [zma-miR166m:117-137]

uccuuggucu    --------              UU G    CU   G  a  -  ---c    u   u  ca  c    c     uc 
          gggg        guuuguggGGAAUG  G CUGG  CGA Gc uc cg    gucc ggc cg  gu gcag gcaga  g
          ||||        ||||||||||||||  | ||||  ||| || || ||    |||| ||| ||  || |||| |||||   
          cccc        caaacgCUCCUUAC  C GACC  GCU cg ag gc    cagg ccg gc  ca cguc cguuu  u
---------a    uacguggc              UU G    AG   g  g  a  uaga    -   -  --  u    -     ug 

>zma-MIR171k (-51.00)   [zma-miR171k*:24-44] [zma-miR171k:65-85]

-g    -      gacg      c         U             - u   u 
  ggag gaagaa    acaugg gUGGUAUUG UUCGGCUCAUGUc c ucu g
  |||| ||||||    |||||| ||||||||| ||||||||||||| | ||| a
  ucuu cuucuu    uguacU CACUAUAAC AAGCCGAGUGuag g agg c
ag    a      ---a      -         C             u u   u 

>zma-MIR171h (-59.10)   [zma-miR171h*:24-44] [zma-miR171h:85-105]

-     ga     acg      c         U             cuucuu  a        ug 
 gggag  aggag   acaugg gUGGUAUUG UUCGGCUCAUGUc      cg ucgagucu  c
 |||||  |||||   |||||| ||||||||| |||||||||||||      || ||||||||  c
 cccuu  uucuc   uguacU CACUAUAAC AAGCCGAGUGuag      gu gguuuagg  g
a     ac     --a      -         C             -----u  a        uu 

>zma-MIR393a (-59.50)   [zma-miR393a:21-42] [zma-miR393a*:88-109]

cc   aa  u         c           C          au  -  -  c   --   c    
  agg  gc gguggagga UCCAAAGGGAU GCAUUGAUCU  uc uc ac ugc  cgc ugc 
  |||  || ||||||||| ||||||||||| ||||||||||  || || || |||  ||| || u
  ucc  cg ucaccuuuU AGGUUUCCCUA CGUGACUAga  ag ag ug gcg  gcg acg 
cu   -g  c         A           A          ac  c  c  a   ua   u    

>zma-MIR408 (-82.80)   [zma-miR408:152-172]

--------    uugguuuu    u    a      u   a   a   u    u     cau     aaguggagggacuagcuugcgaggcagaaagaaggu 
        gggg        gauu ggag caggga gag cag gca ggga ggggc   caaca                                    g
        ||||        |||| |||| |||||| ||| ||| ||| |||| |||||   |||||                                    c
        cccc        cuag ccuC GUCCCU CUC GUC CGU cccu ccucg   guugu                                    c
cguugcca    --------    -    G      U   C   A   C    c     -uu     gaggguaguagcaaaguggccccuccguggccguga 

>zma-MIR156k (-72.50)   [zma-miR156k:21-40] [zma-miR156k*:85-106]

gg      ccc   ---    au        -    -        c     c  c   c      g 
  cuuagg   cga   agag  UGACAGAA GAGA GCGAGCAC uggcg gg gac ggcaug a
  ||||||   |||   ||||  |||||||| |||| |||||||| ||||| || ||| |||||| a
  gagucc   gcu   ucuc  ACUGUCUU CUCU CGCUCGug gccgc cc cug ccguac c
--      --u   ccc    CG        U    U        c     -  -   -      g 

>zma-MIR160f (-62.20)   [zma-miR160f:21-41] [zma-miR160f*:79-99]

-       aagauag              U  C        -  u    -       cac 
 gagguga       ggaauaUGCCUGGC CC UGUAUGCC Gc cgca uggcuac   c
 |||||||       |||||||||||||| || |||||||| || |||| |||||||    
 cucuauu       uuuuGUACGGACCG GG GCGUGCGg cg gcgu gcuggug   g
c       --aauaa              U  A        u  -    u       ucc 

>sbi-MIR399h (-59.30)   [sbi-miR399h:93-113]

aguguu      ----aa    ca   u           c     u   -   caac     ---ag     g 
      cagggu      gaau  cag gcgguucuccu uggca gga ggc    auagc     gcauu g
      ||||||      ||||  ||| ||||||||||| ||||| ||| |||    |||||     |||||  
      guccca      cuua  GUC CGUUAAGAGGA ACCGU ccu ccg    uaucg     cguaa a
-----g      auaugg    cc   C           A     c   a   ---c     cgaca     g 

>sbi-MIR399i (-59.00)   [sbi-miR399i:82-102]

augcc      --    a   u      uu     uc         a   ----u   --a   c 
     uaagcu  gucc guu cagggc  cucuu  uuggcaggg gca     gag   agc a
     ||||||  |||| ||| ||||||  |||||  ||||||||| |||     |||   |||  
     auucga  cagg caa GUCCCG  GAGAG  AACCGUcuc cgu     cuc   ucg u
---gu      cu    a   u      UU     GA         c   cuugu   guc   a 

>sbi-MIR159b (-108.60)   [sbi-miR159b:214-234]

ugaaugaagauaugaagaagaagacgacgacgaugaagaaggcgaagaaaagcgaacaaa                  uc  g         ----    c    g  g  g    u     g      -cucu       caa   - u 
                                                            gagcucccuucgauccaa  ca gaggggaag    uggu gguu ca cu ccgg ucaug augccu     ggugcag   uga c g
                                                            ||||||||||||||||||  || |||||||||    |||| |||| || || |||| ||||| ||||||     |||||||   ||| |  
                                                            CUCGAGGGAAGUUAGGUU  gu cucccuuuc    acca ccaa gu ga ggcc aguac uguggg     ucacguc   acu g a
---------------------------------------cucuuucucucuuucucucUC                  -C  g         uacu    c    -  a  g    c     g      uacgu       --c   c u 

>sbi-MIR164c (-90.00)   [sbi-miR164c:21-41]

uau       uu    ag        AGCA                      ----uu    u   -    ucuc   u 
   ggugugu  gugc  ggUGGAGA    GGACACGUGAGcgaccauccag      ucca cgc uggc    cgc g
   |||||||  ||||  ||||||||    ||||||||||||||||||||||      |||| ||| ||||    ||| c
   cuacaug  cacg  ccaccucu    ccuguguacucgcugguggguu      aggu gcg gccg    gcg g
-gc       gc    ag        ccug                      gcugcu    u   u    --uc   g 

>sbi-MIR166g (-76.20)   [sbi-miR166g:95-115]

--uc    u  g  ua              uu      cu  gg            -  ---a   uu     
    augc cg au  gguuagggggauug  gucugg  cg  gucuccggucga ga    ucc  ggcc 
    |||| || ||  ||||||||||||||  ||||||  ||  |||||||||||| ||    |||  ||| u
    uacg gc ua  ccaauuUCCCUAAC  CGGACC  GC  uagaggccaguu cu    agg  ccgu 
gauu    -  g  --              UU      AG  Uu            g  guug   --     

>sbi-MIR171f (-54.10)   [sbi-miR171f:80-100]

ugaga    -    cg      c         u          -  aua  c       gug 
     gaau aaga  acaugg gugauguug uucggcucau gc   uc uucuuga   u
     |||| ||||  |||||| ||||||||| |||||||||| ||   || |||||||    
     cuua uucu  uguacU CACUAUAAC AAGCCGAGUA cg   ag aaggacu   a
--aua    c    ua      -         C          g  --g  a       acu 

>sbi-MIR395f (-62.50)   [sbi-miR395f:83-103]

aca     u          c         u             ag     ----a       a 
   auguu gguguuacca gaguucccu caagcacuucaug  gcacc     uuaaaua c
   ||||| |||||||||| ||||||||| |||||||||||||  |||||     |||||||  
   uacaa ucauaguggu CUCAAGGGG GUUUGUGAAGUAu  ugugg     aauuuau u
-gc     c          u         -             aa     auuag       c 

>sbi-MIR156e (-71.60)   [sbi-miR156e:21-40]

cga     c cu  -    au        -    -        c     c  c   c      g 
   uuagg c  ga agag  UGACAGAA GAGA GCGAGCAC cggcg gg ggc ggcaug a
   ||||| |  || ||||  |||||||| |||| |||||||| ||||| || ||| |||||| g
   ggucc g  cu ucuc  acugucuu cucu cgcucgug gccgc cc cug ccguac c
--g     u cu  c    cg        u    u        c     -  -   -      g 

>dre-let-7a-1 (-41.50)   [dre-let-7a:11-32]

   gg     U   GU                uuagg   aca   a 
gac  uggga GAG  AGUAGGUUGUAUAGUU     guc   ccc c
|||  ||||| |||  ||||||||||||||||     |||   ||| a
cug  acucu uuc  ucauccaacauaucaa     uag   ggg c
   aa     -   ug                -----   --a   u 

>dre-let-7a-2 (-30.10)   [dre-let-7a:11-32]

gcccc    cU   G   U             uagaauaac   ac 
     cagg  GAG UAG AGGUUGUAUAGUU         auc  u
     ||||  ||| ||| |||||||||||||         |||   
     gucc  uuc auc uccaacaugucaa         uag  g
-uaga    cu   g   c             ---------   ag 

>dre-let-7a-3 (-45.90)   [dre-let-7a:18-39]

  g   ---       g   U   GU                ---------      u 
ga acu   gucguuu ggg GAG  AGUAGGUUGUAUAGUU         ugaggg u
|| |||   ||||||| ||| |||  ||||||||||||||||         |||||| u
cu uga   cggugaa ccc uuc  ucauucaacauaucaa         guuccc a
  g   ugc       g   u   ug                uagacuguc      a 

>dre-let-7a-4 (-37.50)   [dre-let-7a:15-36]

   -a  u      aU   G   U             ---uaga  ua 
gcg  ug cucggg  GAG UAG AGGUUGUAUAGUU       gu  c
|||  || ||||||  ||| ||| |||||||||||||       ||   
cgc  ac gagcuc  uuc auc uccgacaugucaa       ca  a
   ag  -      cu   g   c             uagaggg  ca 

>dre-let-7a-5 (-47.40)   [dre-let-7a:28-49]

gua  ug    u    u ugg      U          GU         ---ugg    -    au 
   cg  uuuu ggug c   acaagg GAGGUAGUAG  UGUAUAGUU      uggg aggg  c
   ||  |||| |||| |   |||||| ||||||||||  |||||||||      |||| ||||   
   gu  ggaa ccac g   uguucc uuccguuauc  acauaucaa      acuu uccc  a
--c  cu    u    u ---      -          ug         uagugg    g    aa 

>dre-let-7a-6 (-54.20)   [dre-let-7a:29-50]

   -a   aaccug          ca   UG         GU         ---- g    a       
cac  gug      uguguuucuu  agg  AGGUAGUAG  UGUAUAGUU    u uggg aggauc 
|||  |||      ||||||||||  |||  |||||||||  |||||||||    | |||| ||||| a
gug  cac      acacagagag  ucc  uccguuauc  acauaucaa    g acuu uccuac 
   ag   -cagua          --   cu         ug         uagu g    a       

>dre-let-7b (-45.40)   [dre-let-7b:11-32]

ucgga     U                     ---  -----a    ugu 
     caggg GAGGUAGUAGGUUGUGUGGUU   uc      gggu   g
     ||||| |||||||||||||||||||||   ||      ||||   u
     guccc uuccgucauccaacauaucaa   ag      cccg   u
gggaa     -                     uug  gacuac    uuu 

>dre-let-7c-1 (-44.60)   [dre-let-7c:23-44]

   a ag    u  a      cU   G   U             uag      gc 
cug g  ugug gc uccagg  GAG UAG AGGUUGUAUGGUU   aauuuu  c
||| |  |||| || ||||||  ||| ||| |||||||||||||   ||||||   
gac c  acac cg agguuc  uuc auc uccaacaugucaa   uugagg  c
   - ga    u  -      cu   g   u             ---      gu 

>dre-let-7c-2 (-41.50)   [dre-let-7c:15-36]

      a      cU   G   U             ---  ga   a 
gugugc uccagg  GAG UAG AGGUUGUAUGGUU   uc  aug c
|||||| ||||||  ||| ||| |||||||||||||   ||  |||  
cacaug agguuc  uuc auc uccaacaugucaa   ag  uac a
      -      cu   g   u             uug  gg   c 

>dre-let-7d-1 (-37.43)   [dre-let-7d:15-36]

u    -       u U   G   UU            uu  auaauaa 
 gugc guugcgg g GAG UAG  GGUUGUAUGGUU  gc       a
 |||| ||||||| | ||| |||  ||||||||||||  ||       c
 cacg cggcguc c uuc auc  ccaacaugucaa  ug       a
g    u       c u   g   uu            -u  aggcccg 

>dre-let-7d-2 (-39.10)   [dre-let-7d:11-32]

         cU   G   UU            uu  au  uaa 
cgcugcagg  GAG UAG  GGUUGUAUGGUU  gc  ca   u
|||||||||  ||| |||  ||||||||||||  ||  ||   c
guggcgucc  uuc auc  ccaacaugucaa  ug  gu   a
         cu   g   uu            -u  ag  ccg 

>dre-let-7e-1 (-43.10)   [dre-let-7e:15-36]

      --       cU   GU         A        ---------     c 
gcuguu  cuugggg  GAG  AGUAGAUUG AUAGUUgu         ggagc c
||||||  |||||||  |||  ||||||||| ||||||||         ||||| u
cgacag  gaauccu  uuc  ucaucuaac uaucaaua         ucucg g
      cg       --   ug         a        gagucucuc     c 

>dre-let-7f (-47.50)   [dre-let-7f:20-41]

-ug   ---a     g g   u UG                      ---------       u 
   gua    ugcuu u cag g  AGGUAGUAGAUUGUAUAGUUgu         aggguag g
   |||    ||||| | ||| |  ||||||||||||||||||||||         ||||||| a
   cau    acggg a guc c  uccguuaucuaacauaucaaua         uccuauu u
aca   aaag     g -   - cu                      gaagaugug       u 

>dre-let-7g-1 (-40.70)   [dre-let-7g:14-35]

--  g        aaU   GU     U          ----- g     ac 
  gg ggcugugg   GAG  AGUAG UUGUAUAGUU     u ggauc  a
  || ||||||||   |||  ||||| ||||||||||     | |||||   
  uc ucgacacu   uuc  ucauc gacauaucaa     g ucuag  c
cc  g        -cu   ug     c          uagag g     ac 

>dre-let-7g-2 (-45.70)   [dre-let-7g:14-35]

    --         U   GU     U          ----uua     ac 
gugg  acuguggga GAG  AGUAG UUGUAUAGUU       ggauc  a
||||  ||||||||| |||  ||||| ||||||||||       |||||   
cgcc  uggcacccu uuc  ucauc gacauaucaa       ucuag  c
    au         -   ug     u          uagaggg     ac 

>dre-let-7h (-51.31)   [dre-let-7h:19-40]

--    ugg           U                 U      -------    a   gua 
  gagu   cuguguugugg GAGGUAGUAAGUUGUGU GUUguu       gggg uca   u
  ||||   ||||||||||| ||||||||||||||||| ||||||       |||| |||    
  cuca   gacguaauacc uuccgucauuuaacaua caauag       uccc ggu   a
cu    ---           -                 u      aggaagu    -   aug 

>dre-let-7i (-42.80)   [dre-let-7i:11-32]

gu        U    U            U    g  ggga      au 
  guacuggc GAGG AGUAGUUUGUGC GUUg uu    ugugac  u
  |||||||| |||| |||||||||||| |||| ||    ||||||  g
  cgugaccg uucc ucaucgaacgcg cagu ag    guauug  c
gu        -    c            u    -  --ag      cc 

>dre-mir-1-2 (-32.96)   [dre-miR-1:54-75]

    -   u  u                  gc     ugaaca 
gccu acu gg guacauacuucuuuaugu  ccaua      u
|||| ||| || ||||||||||||||||||  |||||      a
ugga ugg uc UAUGUAUGAAGAAAUGUA  GGUau      u
    c   u  u                  -A     cgaaaa 

>dre-mir-1-1 (-43.12)   [dre-miR-1:62-83]

    ---auaua  c       uag                gc     --  aac 
gccc        uc cgcuugg   acauacuucuuuauau  ccaua  ug   a
||||        || |||||||   ||||||||||||||||  |||||  ||    
cggg        ag guggacc   UGUAUGAAGAAAUGUA  GGUau  ac   a
    gcaaaaag  a       cUA                -A     cg  gag 

>dre-mir-7a-3 (-45.57)   [dre-miR-7a:28-50]

ugugug          ---------    -   g   U   A    A   AU        gaaaauga 
      uguguucugc         ccuc ugc gag GGA GACU GUG  UUUGUUGU        a
      ||||||||||         |||| ||| ||| ||| |||| |||  ||||||||         
      acacgagacg         gggg acg cuc ccu cuga cgc  aaacaaca        c
------          uccacaccc    c   a   u   g    -   -c        accaaaaa 

>dre-mir-9-1 (-39.20)   [dre-miR-9:15-37] [dre-miR-9*:55-75]

      ggc     UC               G     ---   u 
gggguu   uguua  UUUGGUUAUCUAGCU UAUGA   gug u
||||||   |||||  ||||||||||||||| |||||   ||| a
cccuaa   acaaU  AAGCCAAUAGAUCGA AUacu   uac u
      -ga     GA               A     ucu   u 

>dre-mir-9-2 (-57.80)   [dre-miR-9:42-64] [dre-miR-9*:80-100]

gcucuccucuggugacuu    acu        u   g   UC               G     g  u c 
                  uugc   uggaggcg guu uua  UUUGGUUAUCUAGCU UAUGA ug g u
                  ||||   |||||||| ||| |||  ||||||||||||||| ||||| || |  
                  aacg   aucuucgc cga aaU  AAGCCAAUAGAUCGA AUacu gc c g
---cguuacgagguaugc    acu        -   g   GA               A     -  - g 

>dre-mir-9-4 (-30.90)   [dre-miR-9:15-37]

-u          uucUC       A       G     -   u 
  ggguuaguuu     UUUGGUU UCUAGCU UAUGA guu a
  ||||||||||     ||||||| ||||||| ||||| ||| u
  cuuaaucaaa     aagccaa agaucga auacu uag g
ac          uaugu       g       a     a   u 

>dre-mir-9-3 (-40.10)   [dre-miR-9:19-41] [dre-miR-9*:57-77]

--------uca        g     -  C               G     --  ua 
           ggggguug uuucu cU UUUGGUUAUCUAGCU UAUGA  gu  u
           |||||||| ||||| || ||||||||||||||| |||||  ||   
           cccuuaau aaaga GA AAGCCAAUAGAUCGA AUacu  ca  a
gguuucuaaaa        -     U  -               A     gu  ca 

>dre-mir-9-5 (-37.70)   [dre-miR-9:16-38] [dre-miR-9*:54-74]

   a  g    g   UC               G     -  au 
gga gc aguu uua  UUUGGUUAUCUAGCU UAUGA gu  u
||| || |||| |||  ||||||||||||||| ||||| ||  u
ccu cg ucaa aaU  AAGCCAAUAGAUCGA AUacu ca  u
   c  -    a   GA               A     u  cg 

>dre-mir-9-6 (-43.80)   [dre-miR-9:15-37] [dre-miR-9*:55-75]

     ua   g   UC               G      u  uu 
ggagg  guu cua  UUUGGUUAUCUAGCU UAUGAg gu  a
|||||  ||| |||  ||||||||||||||| |||||| ||   
ccucc  caa gaU  AAGCCAAUAGAUCGA AUacuu cg  u
     ug   a   GA               A      c  uc 

>dre-mir-9-7 (-32.70)   [dre-miR-9:14-36]

    -        -  C       A       G     guua 
gggu uaguuuuu cU UUUGGUU UCUAGCU UAUGA    u
|||| |||||||| || ||||||| ||||||| |||||    g
ucca aucaaaga ga aagccaa agaucga auacu    a
    u        u  -       g       a     auaa 

>dre-mir-10b-2 (-34.29)   [dre-miR-10b:16-38]

-gua         a   AC        AC  A       uccaaaa 
    gucgucuau ugU  CCUGUAGA  CG AUUUGUG       c
    ||||||||| |||  ||||||||  || |||||||        
    cagcgggua aua  ggacaucu  gc uaaacgc       a
aaug         c   -a        cu  a       uaaaacu 

>dre-mir-10c (-39.19)   [dre-miR-10c:16-37]

     -    -ua       -   G     C          uaaacag 
ccugu cauc   uauaUAC CCU UAGAU CGGAUUUGUg       a
||||| ||||   ||||||| ||| ||||| ||||||||||        
ggaua guag   auguaug ggg aucua gcuuaaacac       c
     u    uug       a   g     u          ugacacg 

>dre-mir-10d (-53.46)   [dre-miR-10d:28-50] [dre-miR-10d*:68-89]

u      -uu    ---c              A    G           G    uuuaca 
 ggaagc   uguu    cgucgucuauauaU CCCU UAGAACCGAAU UGUG      c
 ||||||   ||||    |||||||||||||| |||| ||||||||||| ||||      a
 cuuucg   gcaa    guagcagguauAUG GGGG AUUUUGGCUUA ACac      g
a      ucu    aaac              A    -           G    uuaaac 

>dre-mir-15a-1 (-43.40)   [dre-miR-15a:14-35] [dre-miR-15a*:52-73]

       guac   A         A          ag  au 
ccugucg    ugU GCAGCACAG AUGGUUUGUG  uu  a
|||||||    ||| ||||||||| ||||||||||  ||   
ggacagc    ACG CGUCGUGUC UGCCGGACgu  gg  a
       aaca   G         A          gg  gc 

>dre-mir-15a-2 (-47.50)   [dre-miR-15a:25-46]

gc  -   c  u     uga      A        GA          gugau 
  cg agg uc cuagg   uggugU GCAGCACA  AUGGUUUGUG     a
  || ||| || |||||   |||||| ||||||||  ||||||||||      
  gc ucc ag ggucc   acuacg cgucgugu  ugccggacgu     c
-c  a   -  -     uua      a        ag          agaga 

>dre-mir-15b (-48.75)   [dre-miR-15b:39-60]

gu       caucuuuuuauuu   -   ga  g   u  AG                 U  ---   a 
  cugucgu             agc ccu  gu ccc gU  CAGCACAUCAUGGUUUG Aa   guu u
  |||||||             ||| |||  || ||| ||  ||||||||||||||||| ||   ||| a
  gacagua             uug ggg  cg ggg ca  gucguguaguacuaagc uu   cgg a
-c       --caauuaccucu   a   uc  a   u  cu                 c  aaa   g 

>dre-mir-16a (-35.00)   [dre-miR-16a:13-34]

   u   cg  uU           -        U u   aua  c 
ccu ccu  cu  AGCAGCACGUA AAUAUUGG G guu   gu a
||| |||  ||  ||||||||||| |||||||| | |||   ||  
gga gga  ga  ucgucgugugu uuauaacc c caa   cg a
   c   au  cu           a        - -   --c  g 

>dre-mir-16b (-74.10)   [dre-miR-16b:39-60]

     acuu    g g  a     ------     -        g          -UA          ucaaa  a 
ccuga    ggcc u ug cagac      uggcu gccuggcu UAGCAGCACG   AAUAUUGGAG     gc c
|||||    |||| | || |||||      ||||| |||||||| ||||||||||   ||||||||||     ||  
gggcu    ccgg g gc gucug      gccgg cggauuga gucgucgugc   uuaugaccuc     cg u
     ----    - g  -     ccauuu     g        g          cag          cuaag  u 

>dre-mir-16c (-66.90)   [dre-miR-16c:35-56]

    ---u          -   -au   uug                  -UA         Guuacuccuu   c 
gagg    ugugugugug ugc   gug   ucuugcuuUAGCAGCAUG   AAUAUUGGA          ggc a
||||    |||||||||| |||   |||   ||||||||||||||||||   |||||||||          |||  
uucc    gcacguacac acg   cac   agaacgaagucgucgugc   uuauaaccu          ccg a
    uacu          g   aac   uga                  ucg         ----------   u 

>dre-mir-17a-1 (-50.60)   [dre-miR-17a:41-62] [dre-miR-17a*:79-100]

   cuuu    a u   cuu      ---u     -        -CA        A  G     G   -    a 
gga    cuug g gga   gguugg    gucaa uguauugu   AAGUGCUU CA UGCAG UAg uauu u
|||    |||| | |||   ||||||    ||||| ||||||||   |||||||| || ||||| ||| ||||  
ccu    ggac c ccu   ccaauu    caguu acauaacG   UUCACGGA GU ACGUC Auc auaa g
   --ac    - u   --u      uuac     c        AUC        G  G     -   u    g 

>dre-mir-17a-2 (-31.50)   [dre-miR-17a:14-35]

     u    u  -CA        A  G     G   uuca 
gucac guag gu   AAGUGCUU CA UGCAG UAg    a
||||| |||| ||   |||||||| || ||||| |||    u
cagug cauu cg   uucacgga gu acguc auc    a
     c    u  aac        g  g     -   uaau 

>dre-mir-20b (-36.20)   [dre-miR-20b:20-42]

   uu     u      -ucCA      UC   G     G   ug    
gag  ugucc ggcagu     AAGUGC  ACA UGCAG UAG  cca 
|||  ||||| ||||||     ||||||  ||| ||||| |||  || g
cuu  gcagg ccguua     uucacg  ugu acguc auc  ggu 
   cc     -      ugaac      uc   a     -   ua    

>dre-mir-18a (-33.70)   [dre-miR-18a:11-32]

gg          --   U   UC   U    A   -  -a  u 
  cuuugugcUA  AGG GCA  UAG GCAG UAg ug  ag a
  ||||||||||  ||| |||  ||| |||| ||| ||  ||  
  ggagcacggu  ucc cgu  auc cguc auc ac  uc g
ug          cu   u   ga   c    -   c  ga  a 

>dre-mir-18b (-35.00)   [dre-miR-18b:13-34] [dre-miR-18b*:55-76]

ua  g         --   U        U    A   -  aaau 
  cu cuuaugcUA  AGG GCAUUUAG GCAG UAg ug    a
  || |||||||||  ||| |||||||| |||| ||| ||    g
  gg gaauacGGU  UCC CGUGAAUC CGUC auc ac    a
uc  g         CU   C        C    -   c  gauc 

>dre-mir-18c (-35.40)   [dre-miR-18c:11-32]

-  -c         --   U      U       UA   -a  u 
 gc  uuccugcUA  AGG GCAUCU GUGUAGU  gug  ag a
 ||  |||||||||  ||| |||||| |||||||  |||  ||  
 cg  gaggacggu  ucc uguaga cgcguca  uau  uc g
u  au         uu   u      u       uc   ga  u 

>dre-mir-19a (-35.10)   [dre-miR-19a*:16-37] [dre-miR-19a:53-75]

uggu    uu u  gC             --      UAcaagaa   g 
    gcag  c cu  UAGUUUUGCAUAG  UUGCAC        aac g
    ||||  | ||  |||||||||||||  ||||||        |||  
    cguc  g gg  GUCAAAACGUAUC  AACGUG        Uug g
-cgu    cg u  uA             UA      --------   a 

>dre-mir-19b (-38.20)   [dre-miR-19b*:16-37] [dre-miR-19b:55-77]

    gac  c             -   -       UCA  uuuua 
gcug   cc cggucAGUUUUGC UGG UUUGCAU   Gc     a
||||   || ||||||||||||| ||| |||||||   ||      
cgac   gg guuAGUCAAAACG ACC AAACGUG   cg     g
    ---  u             U   U       Ucg  uguca 

>dre-mir-19c (-43.72)   [dre-miR-19c:64-86]

u  aaaag     uuauc  g             -     -   uc    uuuau 
 gg     cccug     ug ggugaguuuugca ggauu gca  cggc     u
 ||     |||||     || ||||||||||||| ||||| |||  ||||     a
 cc     gggac     gc ucGCUCAAAACGU CCUAA CGU  GUcg     c
a  aaaca     ----c  g             A     A   --    uacaa 

>dre-mir-19d (-44.80)   [dre-miR-19d:53-75]

guu   ug   g    c      -    gg   gu    cu  g 
   gug  gcg ucag uuugcg gggu  gca  cagc  cc u
   |||  ||| |||| |||||| ||||  |||  ||||  ||  
   cgc  cgc AGUC AAACGU CCCA  CGU  GUcg  gg g
cau   gu   g    A      A    AA   --    cc  u 

>dre-mir-20a (-48.60)   [dre-miR-20a:51-73] [dre-miR-20a*:88-109]

   uaaau      c uaau   g   u      a     uc  c      -A           G     G   uauuu 
ucu     aaaucu c    guu cag uguguu gaguu  ag agugcU  AAGUGCUUAUA UGCAG UAG     c
|||     |||||| |    ||| ||| |||||| |||||  || ||||||  ||||||||||| ||||| |||      
aga     uuuaga g    uag guc gcguaa uucga  uc ucauGA  UUCACGAGUGU ACGUC Auc     u
   ucguc      a --cc   g   u      -     --  u      AG           G     -   uacug 

>dre-mir-21-1 (-56.80)   [dre-miR-21:49-71]

      gucuuu     c u   uau    cuuu     u               U       G     G   uuac 
uuaugu      auugg g gga   aagu    cccag gugucagaUAGCUUA CAGACUG UGUUG Cug    a
||||||      ||||| | |||   ||||    ||||| ||||||||||||||| ||||||| ||||| |||    u
aguaua      uagcc c ucu   uuua    ggguu uacagucugucggau gucugac acagc ggc    u
      -aaaau     u u   ---    ---c     u               -       a     -   ccgc 

>dre-mir-21-2 (-48.50)   [dre-miR-21:34-56]

        a   ---aa    -u   uuuc     ug        C      G     G uuug 
agacagac gua     agug  ccc    uguca  UAGCUUAU AGACUG UGUUG C    a
|||||||| |||     ||||  |||    |||||  |||||||| |||||| ||||| |    g
uuuguuug cau     uuau  ggg    acagu  gucggaua ucugac acaac g    u
        g   gcagc    uc   uuuu     cu        a      g     g uuuu 

>dre-mir-22a-1 (-47.50)   [dre-miR-22a:55-76]

  ug   u              -      a      u  ccuug 
gc  acc gcagcaguucuuca cuggca gcuuua gu     u
||  ||| |||||||||||||| |||||| |||||| ||      
cg  ugg uguUGUCAAGAAGU GACCGU CGAAau cg     g
  gu   -              C      -      -  accau 

>dre-mir-22a-2 (-47.50)   [dre-miR-22a:55-76]

  ug   u              -      a      u  ccuug 
gc  acc gcagcaguucuuca cuggca gcuuua gu     u
||  ||| |||||||||||||| |||||| |||||| ||      
cg  ugg uguUGUCAAGAAGU GACCGU CGAAau cg     g
  gu   -              C      -      -  accau 

>dre-mir-22b (-42.00)   [dre-miR-22b:51-72]

      u     uc        -     u       -u   g 
guuacu cacag  guucuuca cuggc agcuuua  gug c
|||||| |||||  |||||||| ||||| |||||||  |||  
caaugg guguU  CGAGAAGU GACCG UCGAAau  cac a
      -     GU        U     -       uc   g 

>dre-mir-23a-1 (-37.70)   [dre-miR-23a:56-77]

      g    - a  --          cc       gguggauaaa  g 
gcugug cggg g gg  guuccuggca  gugauuu          ca a
|||||| |||| | ||  ||||||||||  |||||||          ||  
uggcac gucc c CC  UAGGGACCGU  CACUAaa          gu a
      -    u A  UU          UA       ---------a  a 

>dre-mir-23a-2 (-43.16)   [dre-miR-23a:57-78]

    ---  -   c     -g               a       uuaaac 
cucu   uc ugc ggcca  gggaauuccuggcag gugauuu      c
||||   || ||| |||||  ||||||||||||||| |||||||      u
gaga   ag gug ucggu  CCUUUAGGGACCGUU CACUAag      a
    cuc  u   c     aA               A       ucagua 

>dre-mir-23a-3 (-42.60)   [dre-miR-23a:48-69]

c       --a gg           a       -gg     
 cagcugg   g  auuccuggcag gugauuu   gauu 
 |||||||   |  ||||||||||| |||||||   ||| a
 gucgacc   C  UAGGGACCGUU CACUAaa   cuau 
u       aAC UU           A       aua     

>dre-mir-23b (-34.10)   [dre-miR-23b:51-72]

    cu      --          -  c      ---gug  u 
gugg  gugugg  guucuuggca ug ugauuu      ac g
||||  ||||||  |||||||||| || ||||||      ||  
cacc  cacACC  UAGGGACCGU AC ACUAaa      ug u
    au      AU          U  -      aaaaaa  a 

>dre-mir-24-4 (-43.30)   [dre-miR-24:56-77]

       gu  c       g      a      ua       guu 
gagggcu  uc cacuugu ccugcu aacugg  ucaguau   g
|||||||  || ||||||| |||||| ||||||  |||||||   a
cuccuga  ag gugGACA GGACGA UUGACU  GGUcgug   u
       --  u       A      C      -C       auu 

>dre-mir-24-2 (-41.70)   [dre-miR-24:51-72]

g   ug u       g       u     uaa     g ac 
 ggc  g cuccugu ccugcug gcuga   ucagu g  g
 |||  | ||||||| ||||||| |||||   ||||| |  g
 cug  c gggGACA GGACGAC UGACU   GGUca u  c
-   gu c       A       U     --C     g gu 

>dre-mir-24-3 (-53.60)   [dre-miR-24:80-101]

      -   g   --caua  a   aua a    g ug c    c  g   a         uua    acu  g 
gcugaa cgg agu      ug gag   g ugga c  g cucc gu ccu cugagcuga   cagu   gu c
|||||| ||| |||      || |||   | |||| |  | |||| || ||| |||||||||   ||||   ||  
cgacuu guc uca      ac cuc   c accu g  c gagG CA GGA GACUUGACU   GUca   ca a
      c   g   caaacc  -   aaa -    - gu u    A  A   C         -CG    ---  a 

>dre-mir-24-1 (-33.10)   [dre-miR-24:49-70]

-a  uga     g  g   u         ua     u  a 
  cc   gcucc gu ccu cugagcuga  ucagu gu g
  ||   ||||| || ||| |||||||||  ||||| || u
  gg   ugagG CA GGA GACUUGACU  GGUca ua a
cc  -ug     A  A   C         -C     c  a 

>dre-mir-25 (-43.80)   [dre-miR-25:51-72]

    g     ag    g     uu g    c    g  au 
gccg cgcug  aggc gagac  g gcag ugcc uc  u
|||| |||||  |||| |||||  | |||| |||| ||  c
cggc gugac  UCUG CUCUG  C CGUU ACgg ag  c
    g     AG    G     UU A    -    a  ac 

>dre-mir-26a-1 (-34.20)   [dre-miR-26a:11-32]

uuugg     UU     A    A          -g  a 
     ccugg  CAAGU AUCC GGAUAGGCUu  ug u
     |||||  ||||| |||| ||||||||||  || g
     ggacu  guuca uagg cuuauccgaa  gc u
aguaa     ug     g    g          ag  c 

>dre-mir-26a-2 (-51.40)   [dre-miR-26a:37-58]

guguggacu     g   -    -----       uc   u  U         CA         gu ug 
         ugagu cug gaag     ugguugu  ccu gU CAAGUAAUC  GGAUAGGCU  c  u
         ||||| ||| ||||     |||||||  ||| || |||||||||  |||||||||  |   
         acuca ggu cuuc     gccgacg  gga ca guucauuag  cuuauccgg  g  c
------cgu     a   a    ccguu       gu   u  c         ua         ag uc 

>dre-mir-26a-3 (-64.20)   [dre-miR-26a:39-60]

  aag     a  ---g   ca  -gu            ug  U         C          uugug   u 
cu   cugau cu    agu  gu   guggcugcaacc  gU CAAGUAAUC AGGAUAGGCU     gac a
||   ||||| ||    |||  ||   ||||||||||||  || ||||||||| ||||||||||     |||  
ga   gacua ga    uca  ca   caucgacguugg  ca guucauugg ucuuguccgg     uug g
  gaa     -  agaa   -a  aau            gu  c         u          -----   g 

>dre-mir-26b (-44.80)   [dre-miR-26b:20-41]

  auu       ug     UU         C         -----    u 
gc   uggccuu  ccugg  CAAGUAAUC AGGAUAGGU     Uagu c
||   |||||||  |||||  ||||||||| |||||||||     ||||  
cg   aucggag  ggacu  guucauugg ucuuauccg     auca c
  agc       ga     uu         u         gcaug    c 

>dre-mir-27a (-53.50)   [dre-miR-27a:79-100]

u    aua    g  ugc  -aa      u    u  a          cacu         gaucuc  a 
 cugg   ugau uc   ug   guuucg gagg gc ggacuuagcu    cugugaaca      gg u
 ||||   |||| ||   ||   |||||| |||| || ||||||||||    |||||||||      ||  
 gacc   acua ag   ac   cggagu cucc CG CUUGAAUCGG    GACACUUgu      cc a
g    --g    a  cuc  acc      -    U  C          ---U         ----au  u 

>dre-mir-27b (-49.70)   [dre-miR-27b:57-78]

        ag                   auug        u  uu 
ucuuuucu  caggugcagagcuuagcug    gugaacag ga  g
||||||||  |||||||||||||||||||    |||||||| ||   
aggagagg  gucuACGUCUUGAAUCGGU    CACUUguu cu  a
        -a                   --GA        u  ca 

>dre-mir-27c (-38.80)   [dre-miR-27c*:19-40] [dre-miR-27c:56-76]

    gugu    u            C   U       A  cauc 
gguu    ggug caggaCUUAACC ACU GUGAACA UG    g
||||    |||| |||||||||||| ||| ||||||| ||     
ccag    ccgc GUCUUGAAUUGG UGA CACUUgu ac    a
    aucc    C            -   -       a  uuca 

>dre-mir-27d (-43.70)   [dre-miR-27d:57-78]

u   gag      c            auug       --u    g 
 ucu   cgggug agagcuuggcug    gugaacg   gcau g
 |||   |||||| ||||||||||||    |||||||   |||| c
 aga   gcccAC UCUUGAAUCGGU    CACUUgu   ugug u
a   aaa      U            --GA       uuu    u 

>dre-mir-27e (-47.30)   [dre-miR-27e:65-86]

      --ac      ac     a           aucg       u ga  cc 
gucauc    ucgcuc  ggcgc gagcuuagcua    gugagca u  uc  u
||||||    ||||||  ||||| |||||||||||    ||||||| |  ||   
caguag    agugag  cuGUG CUUGAAUCGGU    CACUUgu a  ag  u
      ggca      gu     A           --GA       c aa  aa 

>dre-mir-29b-1 (-37.20)   [dre-miR-29b:52-73]

cu  u  u    -     a            ca    -  auu 
  gc cc ggaa gcuga uucagauggugc  uaga gu   u
  || || |||| ||||| ||||||||||||  |||| ||    
  cg gg ccuU UGACU AAGUUUACCACG  AUcu cg   u
gc  -  u    G     A            --    a  gua 

>dre-mir-29b-2 (-41.70)   [dre-miR-29b:56-77]

    -    u    -                  uu    gug uga 
ucuc cucc ggaa gcugguuucaaguggugu  uaga   c   u
|||| |||| |||| ||||||||||||||||||  ||||   |   c
agag gggg ucuU UGACUAAAGUUUACCACG  AUcu   g   a
    u    u    G                  --    -aa uaa 

>dre-mir-29b-3 (-38.10)   [dre-miR-29b:55-76]

u       c   -           c      gu      -g  uu 
 cuuccuc aga ugcugguuuca auggug  uuagau  ug  c
 ||||||| ||| ||||||||||| ||||||  ||||||  ||   
 ggagggg ucu GUGACUAAAGU UACCAC  GAUcug  ac  u
g       u   U           U      --      aa  ca 

>dre-mir-29a-1 (-38.83)   [dre-miR-29a:81-102]

u     cccucaucucucucucucuc      ccaaacg            cuu       u   - u cc 
 gaaga                    ucccca       augacugauuuc   uggugcu aga g c  a
 |||||                    ||||||       ||||||||||||   ||||||| ||| | |   
 cuucu                    aggggu       uAUUGGCUAAAG   ACCACGA Ucu c g  u
a     ---------------uaacu      -caguaa            UUU       -   a u uc 

>dre-mir-30a (-36.00)   [dre-miR-30a:14-35]

   uc  u c   U         CCC            ua  gc 
ggc  cu g agu GUAAACAUU   GACUGGAAGuug  au  a
|||  || | ||| |||||||||   ||||||||||||  ||  g
ccg  gg c ucg cguuuguag   cugacuuucgac  ua  a
   gu  u a   u         --u            uc  aa 

>dre-mir-30b (-43.50)   [dre-miR-30b:16-37]

u     ugu      U           A A       gugag u 
 uccag   agucgc GUAAACAUCCU C CUCAGCU     c g
 |||||   |||||| ||||||||||| | |||||||     |  
 agguc   ucagug cguuuguggga g gggucgg     g c
g     -ug      u           g c       -agca a 

>dre-mir-30c (-45.10)   [dre-miR-30c:11-32]

cu                   UA       A   gga    
  ucagggagUGUAAACAUCC  CACUCUC Gcu   gcg 
  |||||||||||||||||||  ||||||| |||   || c
  ggucucucgcguuuguagg  gugaggg cgg   cga 
uc                   --       c   agc    

>dre-mir-30d (-42.40)   [dre-miR-30d:35-56]

gugcu     u  - -  u      u  uuc   c U          CC           -  --g  a 
     guaua gg g ua aacugg ug   aug c GUAAACAUCC  GACUGGAAGcu gu   cu c
     ||||| || | || |||||| ||   ||| | ||||||||||  ||||||||||| ||   ||  
     uaugu cc c gu uugacc gc   uac g cguuuguagg  uugacuuucga ca   gg g
--cau     u  g u  c      u  ---   u u          --           g  aaa  c 

>dre-mir-30e-2 (-41.60)   [dre-miR-30e:11-32] [dre-miR-30e*:51-72]

uacg    a            UU           ggug a 
    ggcu cUGUAAACAUCC  GACUGGAAGcu    c c
    |||| ||||||||||||  |||||||||||    |  
    ccga GACGUUUGUAGG  CUGACUUUCga    g a
ucaa    C            --           ggua u 

>dre-mir-92a-1 (-36.90)   [dre-miR-92a:54-75]

ugguc     cugc            u   a        gugug 
     ccuuu    gcagguugggau ggu gcaaugcu     u
     |||||    |||||||||||| ||| ||||||||      
     ggaaa    UGUCCGGCCCUG UCA CGUUAUgg     u
uguua     ----            U   -        aaguu 

>dre-mir-92a-2 (-48.00)   [dre-miR-92a:55-76]

    ca    --u     ug           c  cc        -  g 
acag  uccc   uucuu  cagguugggau gg  gcaaugcu cu u
||||  ||||   |||||  ||||||||||| ||  |||||||| || g
uguu  aggg   gagaa  GUCCGGCCCUG UC  CGUUAUga gg c
    aa    uac     gU           U  -A        a  u 

>dre-mir-92b (-44.42)   [dre-miR-92b:56-77]

uccuacggg         g       uu           uucaa 
         cagggaggu ugggaug  gugcaguguug     u
         ||||||||| |||||||  |||||||||||     c
         gucCCUCCG GCCCUGC  CACGUUAUaac     u
-------ca         -       -U           cgccc 

>dre-mir-93 (-37.40)   [dre-miR-93:10-31]

         -AA           G     G   u ug 
guguguguu   AAGUGCUGUUU UGCAG UAg g  u
|||||||||   ||||||||||| ||||| ||| |   
cacacacaa   uucacgacgag auguc auc c  u
         cac           g     -   u cu 

>dre-mir-96 (-41.42)   [dre-miR-96:24-46]

    ---------------    -c   -    ug     U         G     UU      uuuuau 
gcug               ggcg  ucu ucuu  ccugu UUGGCACUA CACAU  UUGCUu      a
||||               ||||  ||| ||||  ||||| ||||||||| |||||  ||||||      u
cgac               ucgu  aga agaa  gggua aaccgugau gugua  aacgag      a
    uaaaaaaaaaauuca    ac   c    ca     u         -     uu      uuccau 

>dre-mir-99-1 (-32.80)   [dre-miR-99:14-35]

     -uu u  uuA         UC   U      aua gu 
gccac   g ca   ACCCGUAGA  CGA CUUGUG   a  u
|||||   | ||   |||||||||  ||| ||||||   |   
uggug   c gu   uggguaucu  gcu gaacac   u  u
     ucu u  cuc         ua   c      -gg ag 

>dre-mir-99-2 (-25.10)   [dre-miR-99:12-33]

   uu  c   --A         UC   U    ---  g  u 
cac  gu aca   ACCCGUAGA  CGA CUUG   UG cg a
|||  || |||   |||||||||  ||| ||||   || ||  
gug  ca ugu   ugggugucu  gcu gaac   ac gc a
   -u  c   cuc         ua   c    cca  g  u 

>dre-mir-100-1 (-30.50)   [dre-miR-100:24-45]

    agaccu   -   u    c A   CG     C   A      g  ac 
gaag      gcc ugc gaca a ACC  UAGAU CGA CUUGUG ug  u
||||      ||| ||| |||| | |||  ||||| ||| |||||| ||   
cuuc      cgg gug cugu u ugg  aucua guu gaacac ac  g
    ------   u   u    c a   au     u   c      -  cu 

>dre-mir-100-2 (-29.40)   [dre-miR-100:11-32]

a  u c    A   CG    UC   A      gugu 
 gc g caca ACC  UAGA  CGA CUUGUG    c
 || | |||| |||  ||||  ||| ||||||    u
 cg c gugu ugg  aucu  gcu gaacac    c
g  u u    a   au    gu   c      gugu 

>dre-mir-101a (-42.40)   [dre-miR-101a:50-71]

   u   c gg                   a    gucca 
ggc gcc u  uucaguuaucacagugcug ugcu     u
||| ||| |  ||||||||||||||||||| ||||      
ccg cgg a  AAGUCAAUAGUGUCAUGAC AUgg     c
   u   u gG                   -    aaauu 

>dre-mir-101b (-45.30)   [dre-miR-101b:64-85]

     u c --uca  -a      c                    cg     g  ug 
gcucc c g     ug  auuguc auuuucaguuaucaugguac  gugcu ug  c
||||| | |     ||  |||||| ||||||||||||||||||||  ||||| ||  c
ugagg g c     ac  uggcag uaGAAGUCAAUAGUAUCAUG  CAUga ac  u
     u a uacaa  cg      u                    -A     -  ug 

>dre-mir-103 (-44.60)   [dre-miR-103:53-75]

uu    u     g   --   u  u           c   uggaa 
  gccc ggucu uca  gcc cu uacggugcugc uug     u
  |||| ||||| |||  ||| || ||||||||||| |||      
  cggg ccaga AGU  CGG GA AUGUUACGACG Aac     c
cc    c     g   AU   -  C           -   uaggu 

>dre-mir-107 (-34.50)   [dre-miR-107:51-73]

-----  u       c   --   u  u          u    ugg a 
     uc gugugcu uga  gcu cu uacaguguug cuug   c u
     || ||||||| |||  ||| || |||||||||| ||||   | g
     ag cacacga ACU  CGG GA AUGUUACGAC GAac   g g
cgaca  u       c   AU   -  C          -    -ua a 

>dre-mir-122 (-32.30)   [dre-miR-122:11-32]

ucca a     GG       C           -uau a 
    g gcugU  AGUGUGA AAUGGUGUUUG    c u
    | |||||  ||||||| |||||||||||    |  
    c cgaua  ucacacu uuaccgcaaac    g c
ggca -     aa       a           ugcu u 

>dre-mir-124-1 (-32.40)   [dre-miR-124:51-72]

    cuc     ac        a   ga        uauu 
ggcu   gcugu  guguucac gug  ccuugauu    g
||||   |||||  |||||||| |||  ||||||||    u
ccga   cgacA  CGUAAGUG CGC  GGAAUuaa    a
    -ca     AC        G   AC        cuuu 

>dre-mir-124-2 (-29.82)   [dre-miR-124:52-73]

c  gc       c        a   ga        uaaau 
 cu  uuuucuu guguucac gcg  ccuugauu     g
 ||  ||||||| |||||||| |||  ||||||||     u
 gg  gagagAA CGUAAGUG CGC  GGAAUuaa     c
c  ua       C        G   AC        cauac 

>dre-mir-124-3 (-43.40)   [dre-miR-124:68-89]

   u    gg   ---uuc  a     g    cc        a   ga        -   u 
ggc cugu  gau      ag cucug cuuu  guguucac gcg  ccuugauu uaa g
||| ||||  |||      || ||||| ||||  |||||||| |||  |||||||| |||  
ccg gacg  cua      uc gaggc gagA  CGUAAGUG CGC  GGAAUuaa auu u
   -    -a   caauuu  c     -    AC        G   AC        c   c 

>dre-mir-124-4 (-33.70)   [dre-miR-124:52-73]

       g     u        a   ga        uaauu 
gguuuuu cucuu guguucac gug  ccuugauu     u
||||||| ||||| |||||||| |||  ||||||||      
ccgaaga gagAA CGUAAGUG CGC  GGAAUuaa     c
       -     C        G   AC        cauaa 

>dre-mir-124-5 (-43.42)   [dre-miR-124:77-98]

gg  uuu      -  guucuuuuu   -    cg    - c        a   ga        uaaug 
  gu   gcucgu gc         gag uucu  cucu g guguucac gcg  ccuugauu     u
  ||   |||||| ||         ||| ||||  |||| | |||||||| |||  ||||||||      
  cg   ugagca cg         cuc aaga  gagA C CGUAAGUG CGC  GGAAUuaa     c
cg  -uu      a  -----accu   u    -a    A -        G   AC        cauac 

>dre-mir-124-6 (-43.10)   [dre-miR-124:66-87]

---ggguggugacac      g ca    - c        g   ga        uaaua 
               aggccc c  cucu g guguucac gcg  ccuugauu     u
               |||||| |  |||| | |||||||| |||  ||||||||      
               ucuggg g  gagA C CGUAAGUG CGC  GGAAUuaa     c
cccaaacagcaaaau      - -a    A -        G   AC        cauac 

>dre-mir-125a-1 (-40.50)   [dre-miR-125a:14-35]

      cu      C      AC     A       ---  u 
guaugu  cuuugU CCUGAG  CCUUA CCUGUGa   gg c
||||||  |||||| ||||||  ||||| |||||||   || a
cguacg  gggaca ggacuc  ggagu ggacacu   uc a
      uc      a      cu     -       gga  a 

>dre-mir-125a-2 (-44.10)   [dre-miR-125a:29-50]

gauca   caa   g       u      C  UG  AC     A        g cu 
     guc   auc auguaug cugugU CC  AG  CCUUA CCUGUGau u  u
     |||   ||| ||||||| |||||| ||  ||  ||||| |||||||| |   
     cag   uag uauaugu ggcaca gg  uc  ggagu ggacacug a  c
--cug   ---   -       c      a  gu  cu     -        g ac 

>dre-mir-125b-1 (-66.30)   [dre-miR-125b:46-67]

u    uugc g        -     cu   aau ug      a  -a    U    C           -    uuu 
 ucug    a guuggcgg uuggu  gca   g  ccucuc ca  UCCC GAGA CCUAACUUGUG Acgu   c
 ||||    | |||||||| |||||  |||   |  |||||| ||  |||| |||| ||||||||||| ||||   c
 aggc    u cggccgcc gacua  ugu   c  ggggag gu  aggg uucu ggauugggcac ugua   u
a    ---- g        c     -c   -cu gu      a  cg    -    u           g    uug 

>dre-mir-125b-2 (-43.40)   [dre-miR-125b:14-35]

     c   u -c     U    C           -     cu 
gugcc cuc c  uUCCC GAGA CCUAACUUGUG Acguu  g
||||| ||| |  ||||| |||| ||||||||||| |||||  c
cacgg gag g  gaggg cucu ggguugggcac uguag  u
     a   u uc     -    u           c     cu 

>dre-mir-125b-3 (-49.20)   [dre-miR-125b:31-52]

  c    ---g   accg    acuccu  u      U    C C          gc    u 
cc gugc    gcc    cugc      cc ggUCCC GAGA C UAACUUGUGA  uuug g
|| ||||    |||    ||||      || |||||| |||| | ||||||||||  |||| u
gg cacg    cgg    gacg      gg ccaggg uucu g auuggacacu  aaau g
  u    aaaa   --ga    ------  u      -    c a          aa    c 

>dre-mir-125c (-48.30)   [dre-miR-125c:14-35]

       u     UC  UG  AC   A        ----  uc 
gcucucc ccugu  CC  AG  CCU ACUCGUGA    gg  u
||||||| |||||  ||  ||  ||| ||||||||    ||  u
cgggagg ggaca  gg  uc  gga ugggcacu    cc  u
       u     ga  gu  ga   c        aaaa  uu 

>dre-mir-126 (-41.40)   [dre-miR-126*:26-46] [dre-miR-126:64-84]

     auuuua     uu      c           U       C --cu  gc 
gagcc      acugc  cacagu CAUUAUUACUU UGGUACG G    ag  c
|||||      |||||  |||||| ||||||||||| ||||||| |    ||   
uuugg      ugacg  guguca GUAAUAAUGAG GCCAUGC c    uc  a
     -----g     --      C           U       U aaac  ag 

>dre-mir-128-1 (-44.10)   [dre-miR-128:60-81]

u ga  ag   u         c       ugg      au    uu a 
 g  gg  gag gcugggaga ggggccg   cacugu  gaga  c u
 |  ||  ||| ||||||||| |||||||   ||||||  ||||  | g
 c  uc  cuc cgaccuUUU CUCUGGC   GUGACA  cuuu  g u
a ag  -a   c         U       CAA      CU    cg a 

>dre-mir-128-2 (-57.10)   [dre-miR-128:69-90]

          ----g  --cu  c          c         u   u     ca      cug 
ucugcucaug     gu    gu aguaguagga agggggccg uuc acugu  gagaug   c
||||||||||     ||    || |||||||||| ||||||||| ||| |||||  ||||||    
agacgaguau     cg    ca uuaucguccU UUCUCUGGC AAG UGACA  CUcugc   c
          aauaa  ucuu  c          U         C   -     --      uca 

>dre-mir-129-2 (-36.80)   [dre-miR-129:14-35] [dre-miR-129*:55-76]

       a     -       C   CU      G     cuca 
gucuuuc cgaau CUUUUUG GGU  GGGCUU CUguu    a
||||||| ||||| ||||||| |||  |||||| |||||     
cgggagg guuUA GAAAAAC CCA  CCCGAA gguaa    c
       c     C       C   UU      g     cuau 

>dre-mir-129-1 (-41.60)   [dre-miR-129:14-35]

       u     -       C   CU      G   -  c  ug 
guccuuu caggu CUUUUUG GGU  GGGCUU CUg uu cu  a
||||||| ||||| ||||||| |||  |||||| ||| || ||   
caggaga gucua gaaaaac cca  cccgaa gac ga ga  a
       c     u       c   uu      g   c  u  cc 

>dre-mir-130a-1 (-36.80)   [dre-miR-130a:54-75]

ug    u         c   u          a  --        
  ucug ccagugccc uuu auauuguacu cu  gauaacc 
  |||| ||||||||| ||| |||||||||| ||  |||||| c
  ggac gguUACGGG AAA UGUAACGUGA ga  uuauuga 
ag    c         A   U          C  aa        

>dre-mir-130a-2 (-36.80)   [dre-miR-130a:54-75]

ug    u         c   u          a  --        
  ucug ccagugccc uuu auauuguacu cu  gauaacc 
  |||| ||||||||| ||| |||||||||| ||  |||||| c
  ggac gguUACGGG AAA UGUAACGUGA ga  uuauuga 
ag    c         A   U          C  aa        

>dre-mir-130b (-27.60)   [dre-miR-130b:53-74]

cu  u c    ca       cc         -----a   ug   
  gu g cuga  cucuuuc  uguugcacu      cug  gg 
  || | ||||  |||||||  |||||||||      |||  | a
  ca c gacU  GGGAAAG  AUAACGUGA      gac  cg 
gu  c u    AC       UA         Cgaaac   gu   

>dre-mir-130c-1 (-59.62)   [dre-miR-130c:80-101]

        uc  uac     uauu   ca        ---   u         uc         a  ggcca 
gggagagg  ug   gguga    gac  uguuuugu   cca ugcccuuuu  uguuguacu cu     a
||||||||  ||   |||||    |||  ||||||||   ||| |||||||||  ||||||||| ||     u
uccucucc  ac   ccacu    cug  acaagaua   ggu ACGGGAAAA  AUAACGUGA ga     c
        -c  ucu     --uc   ag        guc   U         UU         C  gaaga 

>dre-mir-130c-2 (-33.20)   [dre-miR-130c:50-71]

u    ga    g        uc      acu     g  gu 
 uguu  ccag gcccuuuu  uguugu   acugu ca  c
 ||||  |||| ||||||||  ||||||   ||||| ||   
 acag  gguU CGGGAAAA  AUAACG   UGACg gu  a
a    uc    A        UU      ---     a  ag 

>dre-mir-132-1 (-44.80)   [dre-miR-132*:13-34] [dre-miR-132:54-75]

-   uc a             AU             u    ac 
 guc  c uggcgACCGUGGC  UAGAUUGUUACUg agga  a
 |||  | |||||||||||||  ||||||||||||| ||||   
 cgg  g aucGCUGGUACCG  AUCUGACAAUggu uuuu  g
a   gu -             AC             -    aa 

>dre-mir-132-2 (-55.90)   [dre-miR-132:66-87]

    uuccuc      --------    a  c           u            gua    u 
uccc      ugcugu        cucc ug ugaccguggcu uagauuguuacu   gcgu g
||||      ||||||        |||| || ||||||||||| ||||||||||||   ||||  
aggg      gcgaca        gggg ac GCUGGUACCGA AUCUGACAAUgg   ugca g
    ucauca      uuguggac    a  c           C            ---    c 

>dre-mir-133a-2 (-34.00)   [dre-miR-133a:51-72]

     uuu    a       aa  u  a        aacug 
aaugc   gcua agcuggu  aa gg accaaauc     u
|||||   |||| |||||||  || || ||||||||      
uuacg   cgau UCGACCA  UU CC UGGUUUag     u
     ugu    G       AC  C  C        guauu 

>dre-mir-133a-1 (-34.81)   [dre-miR-133a*:25-46] [dre-miR-133a:62-83]

       ccacaau  uuu    a       AA  U  A        accuc 
caucaaa       gc   gcua AGCUGGU  AA GG ACCAAAUc     u
|||||||       ||   |||| |||||||  || || ||||||||      
guaguuu       cg   cgau UCGACCA  UU CC UGGUUUag     u
       -------  uau    G       AC  C  C        guaac 

>dre-mir-133b (-34.30)   [dre-miR-133b*:15-36] [dre-miR-133b:53-74]

    ccu   u         CA  U  A     GU ag  gu 
cacg   ugc gugGCUGGU  AA GG ACCAA  C  gu  u
||||   ||| |||||||||  || || |||||  |  ||   
gugc   gcg cAUCGACCA  UU CC UGGUU  g  cg  u
    --u   u         AC  C  C     Ug ag  uc 

>dre-mir-133c (-39.00)   [dre-miR-133c:55-76]

-gaaa      u    u      aa  c  a     gu ggg  u 
     cacggc uagu gcuggu  aa gg accaa  c   ug u
     |||||| |||| ||||||  || || |||||  |   ||  
     gugccg gucA CGACCA  UU CC UGGUU  g   gc u
cuuaa      c    U      AC  U  C     Ug aga  g 

>dre-mir-135c-1 (-32.02)   [dre-miR-135c:11-32]

ug     uu U        CUAU           uuucu 
  cugug  u AUGGCUUU    UCCUAUGUGau     u
  |||||  | ||||||||    |||||||||||     c
  gacau  g uaccgaaa    gggauacacug     u
ga     gg u        -cuu           ugccg 

>dre-mir-135c-2 (-32.02)   [dre-miR-135c:11-32]

ug     uu U        CUAU           uuucu 
  cugug  u AUGGCUUU    UCCUAUGUGau     u
  |||||  | ||||||||    |||||||||||     c
  gacau  g uaccgaaa    gggauacacug     u
ga     gg u        -cuu           ugccg 

>dre-mir-135c-3 (-44.55)   [dre-miR-135c:36-57]

    g    aa  aacucaaaa    a        U        CUAU           uuuga 
ugca ucua  gc         cacu cugugcuu AUGGCUUU    UCCUAUGUGau     u
|||| ||||  ||         |||| |||||||| ||||||||    |||||||||||     a
augu aggu  cg         guga gacaugga uaccgaaa    gggauguacua     u
    -    ga  -acuauucg    -        u        -cuu           uguag 

>dre-mir-137-1 (-42.20)   [dre-miR-137:51-72]

            ug   g           ug a     -  g 
ggcucucuucgg  acg guauucuuggg  g uaaua cg c
||||||||||||  ||| |||||||||||  | ||||| || u
cugagaggaguu  UGC CAUAAGAAUUC  U AUUgu gc c
            gA   G           GU -     u  u 

>dre-mir-137-2 (-58.20)   [dre-miR-137:75-96]

     g    uu  cu uauaaag            ug   g           ug a     -  g 
guucu uugu  cc  c       gacucucuucgg  acg guauucuuggg  g uaaua cg c
||||| ||||  ||  |       ||||||||||||  ||| |||||||||||  | ||||| || u
cgaga agcg  gg  g       cugagaggagcu  UGC CAUAAGAAUUC  U AUUgu gc c
     g    gc  cu -----ua            gA   G           GU -     u  u 

>dre-mir-138 (-44.20)   [dre-miR-138:11-32]

u   -   ug AG             UCA     --a    a ac 
 gug ugc  c  CUGGUGUUGUGAA   GGCCg   uguc c  g
 ||| |||  |  |||||||||||||   |||||   |||| |   
 cac acg  g  gaccacaacacuu   ucggc   auag g  u
a   c   gu -g             -ua     cca    c ac 

>dre-mir-140 (-56.70)   [dre-miR-140:23-44] [dre-miR-140*:62-84]

   uu gu    -u ug       A             A       uu   uc 
gug  u  cucc  g  ucccguC GUGGUUUUACCCU UGGUAGg  acg  a
|||  |  ||||  |  ||||||| ||||||||||||| |||||||  |||   
cgu  g  gagg  u  agggCAG CACCAAGAUGGGA ACCAUcu  ugu  u
   cu ug    uc gu       G             C       --   cg 

>dre-mir-141 (-35.90)   [dre-miR-141:51-72]

   u       a    -     u       c    cugu    
guc cuagggu cauc uuacc gacagug uugg    uca 
||| ||||||| |||| ||||| ||||||| ||||    || c
cag ggucuca GUAG AAUGG CUGUCAC AAUc    agu 
   u       C    C     U       -    uugu    

>dre-mir-142a (-47.37)   [dre-miR-142a-5p:18-38] [dre-miR-142a-3p:55-77]

cgu        g               A         Uaaacccc 
   acagugca ucaucCAUAAAGUAG AAGCACUAC        u
   |||||||| ||||||||||||||| |||||||||         
   ugucaugu aguAGGUAUUUCAUC UUUGUGAUG        c
-gu        g               C         Ugacaccg 

>dre-mir-142b (-39.57)   [dre-miR-142b-5p:15-36]

        g   cu          AC        UAaacuuc 
acagugca uca  CAUAAAGUAG  AGCACUAC        u
|||||||| |||  ||||||||||  ||||||||         
ugucaugu agu  guauuucauc  uugugaug        c
        g   ag          cu        ugacacau 

>dre-mir-143-1 (-45.20)   [dre-miR-143:57-77]

  u  -     --c    gg    c g         g      u  -  aa 
ga cu acagu   gucu  cccg g ugcagugcu caucuc gg uc  c
|| || |||||   ||||  |||| | ||||||||| |||||| || ||   
cu ga uguca   cagg  gggC C AUGUCACGA GUAGAG cu ag  u
  c  c     caa    -a    U G         A      U  g  gg 

>dre-mir-143-2 (-45.20)   [dre-miR-143:57-77]

  u  -     --c    gg    c g         g      u  -  aa 
ga cu acagu   gucu  cccg g ugcagugcu caucuc gg uc  c
|| || |||||   ||||  |||| | ||||||||| |||||| || ||   
cu ga uguca   cagg  gggC C AUGUCACGA GUAGAG cu ag  u
  c  c     caa    -a    U G         A      U  g  gg 

>dre-mir-144 (-32.70)   [dre-miR-144:51-70]

--------       a  c  g        g         --ag    u 
        gcucucu ga ag auaucauc uauacugua    uuca u
        ||||||| || || |||||||| |||||||||    ||||  
        uggggga cu UC UGUAGUAG AUAUGACAU    gagu a
cgagcaac       c  a  A        -         caca    u 

>dre-mir-145 (-54.60)   [dre-miR-145:30-51]

     cu  aucauu      u        UC    U  C             ggg a 
ucagu  uc      uccuca ccccgggG  CAGU UU CCAGGAAUCCCuu   c a
|||||  ||      |||||| ||||||||  |||| || |||||||||||||   |  
aguca  ag      gggggu gggguucu  guca aa gguccuuaggggg   g u
     uc  ----gu      u        -u    u  a             aaa c 

>dre-mir-146a (-37.94)   [dre-miR-146a:25-47]

        -------u       cu  u  cU         AU           uguuca 
gaguuugu        uugagca  uu cc  GAGAACUGA  UCCAUAGAUGG      u
||||||||        |||||||  || ||  |||||||||  |||||||||||       
cuuaaaca        aauuugu  aa gg  uucuugacu  ggguaucuacu      g
        ucgucugu       cu  c  uc         -c           ugaaaa 

>dre-mir-146b-1 (-33.39)   [dre-miR-146b:12-33]

  -   ug    U              AA    Gucugcu 
gc ucu  gcuu GAGAACUGAAUUCC  GGGU       u
|| |||  |||| ||||||||||||||  ||||        
cg agg  ugaa uucuugacuugagg  cccg       u
  u   uu    -              ca    acuuaua 

>dre-mir-146b-2 (-33.39)   [dre-miR-146b:12-33]

  -   ug    U              AA    Gucugcu 
gc ucu  gcuu GAGAACUGAAUUCC  GGGU       u
|| |||  |||| ||||||||||||||  ||||        
cg agg  ugaa uucuugacuugagg  cccg       u
  u   uu    -              ca    acuuaua 

>dre-mir-148 (-28.70)   [dre-miR-148:49-70]

c        -ua            a    cc    - uga 
 uuuccaag   aaguucugugau cacu  gacu c   a
 ||||||||   |||||||||||| ||||  |||| |   u
 gaggguuu   UUCAAGACAUUA GUGA  CUga g   g
u        UGU            C    --    c uuu 

>dre-mir-150 (-45.40)   [dre-miR-150:11-32]

ca    c           U      A        ugauu 
  ucuc gucUCUCCCAA CCUUGU CCAGUGuc     u
  |||| ||||||||||| |||||| ||||||||      
  ggag cgggggggguu ggggca ggucgcag     a
ag    u           u      -        uagac 

>dre-mir-152 (-29.62)   [dre-miR-152:54-75]

cuguuca  u    c         g  a    ca    uugaa 
       cc ggcu aaguucugu au cacu  gacu     u
       || |||| ||||||||| || ||||  ||||     c
       gg ccGG UUCAAGACA UA GUGA  CUga     a
-------  c    U         G  C    --    uggug 

>dre-mir-153b (-73.30)   [dre-miR-153b:81-102]

ga           ---  g     ag  -auu -    g         -           gu -       a uagu 
  gcgauggagcg   cg uagcg  gu    g caca cugucugug ucauuuuugug  u ugcagcu g    c
  |||||||||||   || |||||  ||    | |||| ||||||||| |||||||||||  | ||||||| |     
  cgcuaccucgc   gu gucgc  cg    c gugu gacagacaC AGUAAAAACAC  A ACGUUga c    u
-c           aaa  a     aa  acgu a    a         G           UG U       c uugg 

>dre-mir-153a (-36.90)   [dre-miR-153a:50-71]

    g      -             gu       -a   a 
gguu ccagug ucauuuuugugau  ugcagcu  guu u
|||| |||||| |||||||||||||  |||||||  ||| a
ucaa gguuaC AGUGAAAACACUG  ACGUUga  cga u
    a      U             AU       cc   g 

>dre-mir-153c (-71.80)   [dre-miR-153c:81-102]

       -   -a       -----    gac   -g       c      -              -       a uagu 
gauggag auc  guagguc     ccug   gua  cacaccu ccagug ucauuuuugugauu ugcagcu g    c
||||||| |||  |||||||     ||||   |||  ||||||| |||||| |||||||||||||| ||||||| |     
cuaccuc uag  cauucgg     ggac   cgu  gugugga gguuaC AGUAAAAACACUGA ACGUUga c    u
       c   gc       aguga    -ga   ga       u      U              U       c uggg 

>dre-mir-155 (-35.70)   [dre-miR-155:11-32]

         u           C  G     G     gu 
uggugcagg UUAAUGCUAAU GU AUAGG Guuua  g
||||||||| ||||||||||| || ||||| |||||  c
aucgcguuc aauuacgauug cg uaucc caagu  u
         u           u  -     a     ag 

>dre-mir-181c (-30.90)   [dre-miR-181c:12-33]

     c  a   A         CUG          uuau 
ggguc ug uuC CAUUCAUUG   UCGGUGGGuu    c
||||| || ||| |||||||||   ||||||||||     
cucgg au aag guaaguaac   ggccgcucag    u
     c  c   a         --a          cuuc 

>dre-mir-184 (-32.79)   [dre-miR-184:55-76]

    aa     c         c      a c     uauccau 
gucg  cacgu uccuuauca uuuucc g ccagc       u
||||  ||||| ||||||||| |||||| | |||||        
uagc  gugua GGGAAUAGU AAGAGG C GGUug       u
    cc     C         C      - A     cuuauga 

>dre-mir-190 (-46.80)   [dre-miR-190:46-67]

ucuggaggugagguagaccuggaagccuuucu     c u    -uU                UA     uuau 
                                gcagg c cugu   GAUAUGUUUGAUAUAU  GGUug    u
                                ||||| | ||||   ||||||||||||||||  |||||     
                                cgucc g gaca   uuauacaaacuauaua  ucaac    c
---------------------gaccucugucu     u u    ucc                --     cugu 

>dre-mir-462 (-40.20)   [dre-miR-462:11-32]

--------------------gucuggauggUA      C     AU       u ug   g 
                                ACGGAA CCAUA  GCAGCUg u  guu a
                                |||||| |||||  ||||||| |  |||  
                                ugccuu ggugu  ugucgac a  uag u
uagaguuacucgaggacguucuuuccuccccg      a     -c       - gu   u 

>dre-mir-193a-1 (-42.20)   [dre-miR-193a:61-82]

gacauua   u      gg     u     cg   a  g    u   ua 
       aug guuaga  uuggg cuuug  ggc ag ugag agu  a
       ||| ||||||  ||||| |||||  ||| || |||| |||  a
       uac cggucu  GACCC GAAAC  CCG UC Acuc uca  u
-cuauug   u      uU     U     AU   G  A    -   uu 

>dre-mir-193a-2 (-38.10)   [dre-miR-193a:55-76]

-------gaaa   u   ag        u     cg   a  g     uuu 
           gug guc  aggcuggg cuuug  ggc ag ugagu   c
           ||| |||  |||||||| |||||  ||| || |||||   c
           uac cgg  uuUGACCC GAAAC  CCG UC Acuua   u
cucuaccagug   c   cu        U     AU   G  A     uuu 

>dre-mir-193a-3 (-38.10)   [dre-miR-193a:55-76]

-------gaaa   u   ag        u     cg   a  g     uuu 
           gug guc  aggcuggg cuuug  ggc ag ugagu   c
           ||| |||  |||||||| |||||  ||| || |||||   c
           uac cgg  uuUGACCC GAAAC  CCG UC Acuua   u
cucuaccagug   c   cu        U     AU   G  A     uuu 

>dre-mir-193b (-42.40)   [dre-miR-193b:52-73]

    - uu   uga          g    g  a  ag  uug 
guga u  cag   cgggacuuug gggc ag ug  ua   a
|||| |  |||   |||||||||| |||| || ||  ||    
cacu a  guc   GCCCUGAAAC CCCG UC Ac  au   u
    c gg   uUC          G    G  A  cu  cuc 

>dre-mir-194a (-49.40)   [dre-miR-194a:15-35]

u    -   a    u          A      G       uu 
 ggug cug cugc UGUAACAGCA CUCCAU UGGaagg  u
 |||| ||| |||| |||||||||| |||||| |||||||   
 ccac gau gacg gcguugucgu gaggug accuucu  g
a    u   a    u          c      -       gu 

>dre-mir-194b (-35.50)   [dre-miR-194b:11-32]

    g   g U        CG       U  Aaa  gca 
gcuc cug g GUAACAGC  CUCCAUG GG   au   u
|||| ||| | ||||||||  ||||||| ||   ||    
ugag gac u cauugucg  gagguac cc   ug   u
    a   g c        aa       -  --g  aac 

>dre-mir-196a-2 (-28.00)   [dre-miR-196a:11-32]

ucga ug   U  GU             U   a  ac 
    g  guu AG  AGUUUCAUGUUGU GGG uu  a
    |  ||| ||  ||||||||||||| ||| ||   
    c  uaa uc  ucaaagugcaacg cuc aa  u
accc gu   u  ug             u   a  cu 

>dre-mir-196b (-29.80)   [dre-miR-196b:11-32]

gucu ug               A   G   GGc    cgu 
    g  auuUAGGUAGUUUCA GUU UUG   ugga   u
    |  ||||||||||||||| ||| |||   ||||    
    c  uaaguccgucaaagu caa gac   acuu   u
accu gu               c   g   ---    uaa 

>dre-mir-200a (-41.44)   [dre-miR-200a:52-73]

  -          c    -             c    cuguau 
gg cacuuagcag cauc uuaccggacagug ugga      a
|| |||||||||| |||| ||||||||||||| ||||       
cc guggguuguu GUAG AAUGGUCUGUCAC AUcu      a
  a          U    C             A    uuuguc 

>dre-mir-200b (-36.22)   [dre-miR-200b:50-71]

      c   uc    -    g      c      uuuca 
gguagu guc  cauc uuac aggcag auugga     u
|||||| |||  |||| |||| |||||| ||||||     u
ccgucg uag  GUAG AAUG UCCGUC UAAUcu     a
      u   uA    U    G      A      uuuuc 

>dre-mir-200c (-32.70)   [dre-miR-200c:51-72]

      -  ugg  c    -    a       u     u uua 
uggaug cc   cu cauc uuac aggcagu uugga g   u
|||||| ||   || |||| |||| ||||||| ||||| |    
aucuac gg   ga GUAG AAUG UCCGUCA AAUcu u   a
      u  -ua  C    U    G       U     c ucu 

>dre-mir-202 (-36.20)   [dre-miR-202*:11-32] [dre-miR-202:47-68]

       u           -A   A         cau 
cuguucc uuUUCCUAUGC  UAU CCUCUUUGa   g
||||||| |||||||||||  ||| |||||||||   c
ggcgggg AAAAGGGUACG  AUA GGAGAaauu   u
       u           GG   C         ucg 

>dre-mir-203b (-34.70)   [dre-miR-203b*:14-35] [dre-miR-203b:51-72]

    - -    gc           C    G    A     cuu 
uccu c uuug  cgAGUGGUUCU AACA UUCA CAguu   u
|||| | ||||  ||||||||||| |||| |||| |||||    
agga g agac  GUUCACCAGGA UUGU AAGU Guuag   u
    a c    ua           C    A    -     uag 

>dre-mir-204-2 (-52.10)   [dre-miR-204:37-58]

      -  c     ac   uuug    cuc   gg           CA     U    g  guu 
guguug cu uagug  cag    ugac   cug  uUUCCCUUUGU  UCCUA GCCU ca   c
|||||| || |||||  |||    ||||   |||  |||||||||||  ||||| |||| ||    
cauaac ga aucau  guc    gcug   gac  ggagggaaacg  agggu cgga gu   c
      u  c     --   --ca    -ua   uu           ac     -    -  agu 

>dre-mir-204-3 (-52.10)   [dre-miR-204:37-58]

      -  c     ac   uuug    cuc   gg           CA     U    g  guu 
guguug cu uagug  cag    ugac   cug  uUUCCCUUUGU  UCCUA GCCU ca   c
|||||| || |||||  |||    ||||   |||  |||||||||||  ||||| |||| ||    
cauaac ga aucau  guc    gcug   gac  ggagggaaacg  agggu cgga gu   c
      u  c     --   --ca    -ua   uu           ac     -    -  agu 

>dre-mir-206-1 (-38.12)   [dre-miR-206:59-80]

---    guug       u  ag                gc     uuaau 
   gaau    ccucuug ga  acaugcuuccuuauau  ccaua     g
   ||||    ||||||| ||  ||||||||||||||||  |||||     c
   uuua    gggggac uu  UGUGUGAAGGAAUGUA  GGUau     u
cug    --aa       u  GG                -A     ugaac 

>dre-mir-206-2 (-39.02)   [dre-miR-206:64-85]

-ga u   c  -uug        ga g                cc     uucag 
   g ugg ug    cuuauuga  c acauacuuccuuauau  ccaua     a
   | ||| ||    ||||||||  | ||||||||||||||||  |||||     a
   c acu ac    gagugacu  G UGUGUGAAGGAAUGUA  GGUau     u
cua u   -  ucua        uc G                -A     cuaau 

>dre-mir-216a-2 (-39.60)   [dre-miR-216a:15-36]

-    auuuu     U         U   AA       --ua   u 
 gcug     uggca AAUCUCAGC GGC  CUGUGAg    gug u
 ||||     ||||| ||||||||| |||  |||||||    |||  
 cgac     acugu uuggggucg ucg  gacacuc    uac u
a    -acac     c         -   cg       uccc   u 

>dre-mir-216b-1 (-31.20)   [dre-miR-216b:11-32]

  u     gg        G    -   C     ugu   u 
ac gacug  UAAUCUCU CAGG CAA UGUGA   gau a
|| |||||  |||||||| |||| ||| |||||   |||  
ug cugac  guuggaga gucc guu acacu   cug c
  u     ga        a    a   -     ---   a 

>dre-mir-216b-2 (-31.30)   [dre-miR-216b:10-31]

-cu     g         G    -   C     ugu   u 
   gacug gUAAUCUCU CAGG CAA UGUGA   gau a
   ||||| ||||||||| |||| ||| |||||   |||  
   cugac uguuggaga gucc guu acacu   cug c
ugu     g         a    a   -     ---   a 

>dre-mir-217-2 (-49.50)   [dre-miR-217:25-46]

augagaa     u          aUAC                U  ---a  a 
       cuuuc gauguuggug    UGCAUCAGGAACUGAU GG    ug u
       ||||| ||||||||||    |||||||||||||||| ||    || a
       gaaag cuacgacuac    acguaguccuugacua cc    ac u
------a     -          ccuc                -  gagg  u 

>dre-mir-218a-1 (-42.90)   [dre-miR-218a:11-32]

    u      U         CU         cc  cgcc 
cagc gucucU GUGCUUGAU  AACCAUGUG  gc    u
|||| |||||| |||||||||  |||||||||  ||    a
gucg caggga cacgaacug  uugguacac  cg    c
    c      c         cc         uc  aaca 

>dre-mir-218a-2 (-39.50)   [dre-miR-218a:14-35]

     gu     uUU         CU        ---    gca 
gcggg  uuucc   GUGCUUGAU  AACCAUGU   Gguu   g
|||||  |||||   |||||||||  ||||||||   ||||   a
cguuc  gaagg   cacgaacug  uugguaca   ucag   c
     ug     uac         uc        uaa    acu 

>dre-mir-218b (-29.00)   [dre-miR-218b:11-32]

    a a   UU       AUC        --   uuc 
cagg c cca  GUGCUUG   UAACCAUG  CAg   c
|||| | |||  |||||||   ||||||||  |||    
guuc g ggu  cacgaac   guugguac  guc   c
    a a   uu       cgu        cu   uuu 

>dre-mir-219-3 (-55.50)   [dre-miR-219:49-70]

   cu   uuaa        gucu   u   uacuga   u    u  -    U     AA            gcuu 
cuu  cuu    guucaucu    ggu uga      cgg cagg gc UGAU GUCCA  CGCAAUUCUUgu    g
|||  |||    ||||||||    ||| |||      ||| |||| || |||| |||||  ||||||||||||    u
gaa  gaa    cggguagg    cua acu      guc gucc cg acua caggu  guguugaggaca    g
   au   ---c        acau   c   --ccug   u    u  c    -     ag            aagu 

>dre-mir-301a-1 (-34.00)   [dre-miR-301a:51-72]

      aa   gu   c    --uu -        a  -  auu 
gcuguu  cag  gcu ugac    c auugcacu cu gu   g
||||||  |||  ||| ||||    | |||||||| || ||    
cgacga  guc  cGA ACUG    G UAACGUGA ga cg   g
      ga   ug   A    UUAU A        C  u  aca 

>dre-mir-301a-2 (-34.00)   [dre-miR-301a:51-72]

      aa   gu   c    --uu -        a  -  auu 
gcuguu  cag  gcu ugac    c auugcacu cu gu   g
||||||  |||  ||| ||||    | |||||||| || ||    
cgacga  guc  cGA ACUG    G UAACGUGA ga cg   g
      ga   ug   A    UUAU A        C  u  aca 

>dre-mir-301b (-26.60)   [dre-miR-301b:49-70]

      ugu   uu       ---        a  -  acc 
aagguc   ugc  ugacgau   guugcacu cu ga   a
||||||   |||  |||||||   |||||||| || ||   u
uuucgg   acG  ACUGUUA   UAACGUGA ga cu   c
      cuu   UU       UGA        C  a  aau 

>dre-mir-301c (-30.90)   [dre-miR-301c:50-71]

u    uc  c    c       ---        a   uacca 
 gagg  ag ugcu ugacgau   guugcacu cug     u
 ||||  || |||| |||||||   |||||||| |||      
 cucc  uu acGA ACUGUUA   UAACGUGA gau     c
u    ga  u    U       UGA        C   cuuac 

>dre-mir-338-1 (-39.10)   [dre-miR-338:52-73]

   -u     cu       uc  -         ccu     uuu 
ggu  ucucc  gcaacaa  uc cugaugcug   gagug   u
|||  |||||  |||||||  || |||||||||   |||||   u
cca  ggagg  cGUUGUU  AG GACUACGAC   CUcac   c
   cu     -c       UU  U         ---     cuu 

>dre-mir-338-2 (-39.10)   [dre-miR-338:52-73]

   -u     cu       uc  -         ccu     uuu 
ggu  ucucc  gcaacaa  uc cugaugcug   gagug   u
|||  |||||  |||||||  || |||||||||   |||||   u
cca  ggagg  cGUUGUU  AG GACUACGAC   CUcac   c
   cu     -c       UU  U         ---     cuu 

>dre-mir-338-3 (-45.00)   [dre-miR-338:71-92]

     ug - ug     cu     -  g   ag     u   -         aau    guguu 
gugug  u g  uguuu  ggugc cu cug  aacaa auc cugaugcug   gagu     g
|||||  | |  |||||  ||||| || |||  ||||| ||| |||||||||   ||||      
uauau  g c  acggg  ucacg gg gac  UUGUU UAG GACUACGAC   CUca     a
     gu u cu     uu     a  a   cG     U   U         ---    aagga 

>dre-mir-338-4 (-45.00)   [dre-miR-338:71-92]

     ug - ug     cu     -  g   ag     u   -         aau    guguu 
gugug  u g  uguuu  ggugc cu cug  aacaa auc cugaugcug   gagu     g
|||||  | |  |||||  ||||| || |||  ||||| ||| |||||||||   ||||      
uauau  g c  acggg  ucacg gg gac  UUGUU UAG GACUACGAC   CUca     a
     gu u cu     uu     a  a   cG     U   U         ---    aagga 

>dre-mir-363 (-37.60)   [dre-miR-363:78-99]

        aa  --uuu    u  u uuuu          a  c         auuag   u ga 
uaaaugca  ua     gucu gc g    cggguggaug cu ugcaauuuu     uga g  a
||||||||  ||     |||| || |    |||||||||| || |||||||||     ||| |   
guuugcgu  au     uagg cg c    GUCUACCUAU GG ACGUUAAaa     acu c  a
        cc  uaccu    u  c uaAU          -  C         --aua   u aa 

>dre-mir-365-1 (-37.26)   [dre-miR-365:55-76]

--cc      ag        gc           c     uuucag 
    gcaggg  aaugaggg  uuuugggggca uugug      u
    ||||||  ||||||||  ||||||||||| |||||      u
    cguucu  uUAUUCCU  AAAAUCCCCGU AAUac      u
guca      cg        -A           -     uaccac 

>dre-mir-365-2 (-39.70)   [dre-miR-365:58-79]

-----aggca      aa        ac           -----    u   u 
          gcaaga  aaugaggg  uuuuaggggca     gcug guu u
          ||||||  ||||||||  |||||||||||     |||| ||| a
          cguucu  uUAUUCCU  AAAAUCCCCGU     ugac caa u
cgacuuuuaa      cg        -A           AAUac    c   u 

>dre-mir-365-3 (-39.80)   [dre-miR-365:59-80]

----aaguca      aa        ac           -----    u   a 
          gcaaga  agugaggg  uuuuaggggca     gcug guu u
          ||||||  ||||||||  |||||||||||     |||| ||| a
          cguucu  uUAUUCCU  AAAAUCCCCGU     ugac cag c
caacucguga      cg        -A           AAUac    c   u 

>dre-mir-365-4 (-39.80)   [dre-miR-365:59-80]

----aaguca      aa        ac           -----    u   a 
          gcaaga  agugaggg  uuuuaggggca     gcug guu u
          ||||||  ||||||||  |||||||||||     |||| ||| a
          cguucu  uUAUUCCU  AAAAUCCCCGU     ugac cag c
caacucguga      cg        -A           AAUac    c   u 

>dre-mir-375-1 (-38.50)   [dre-miR-375:49-70]

u          u    u     ac   c    u  a  ug 
 gcacuugcuu acgu gagcc  acg acaa ac ug  g
 |||||||||| |||| |||||  ||| |||| || ||   
 cgugaacgaA UGCG CUCGG  UGC UGUU ug ac  a
a          U    -     CU   U    U  -  uu 

>dre-mir-375-2 (-28.70)   [dre-miR-375:52-73]

u   c    c c    u     ac   c    u    --g a 
 gua uugu u acgu gagcc  acg acaa gccu   c g
 ||| |||| | |||| |||||  ||| |||| ||||   |  
 cgu gacg A UGCG CUCGG  UGC UGUU uggg   g a
a   a    c U    -     CU   U    U    aaa u 

>dre-mir-454a (-42.84)   [dre-miR-454a:77-98]

u  c    -  uuugagaauuaau     uu             ---         cu     gucca   u 
 ug aggu ca             ccuaa  cuugggacccuau   caguauugc  cugcu     cug g
 || |||| ||             |||||  |||||||||||||   |||||||||  |||||     |||  
 ac ucca gu             ggauu  ggauuuuGGGAUA   GUUAUAACG  GAUga     gac u
g  u    u  ------------u     uu             AUC         -U     -----   u 

>dre-mir-454b (-40.62)   [dre-miR-454b:66-87]

    aa    ------     c  g           ---         cu       ucuca 
gaua  ugca      ucuug ag cgagacccuau   caauauugc  cugcuuu     c
||||  ||||      ||||| || |||||||||||   |||||||||  |||||||     u
cuau  acgu      ggaau uc guucuGGGAUA   GUUAUAACG  GAUgagg     g
    -a    cuaauc     u  a           UUC         -U       uauuu 

>dre-mir-455 (-42.40)   [dre-miR-455:16-37]

---ucc  -   -g     -----          U      A   C   gaa 
      cu ggu  ugagg     gUAUGUGCCC UGGACU CAU Gug   g
      || |||  |||||     |||||||||| |||||| ||| |||    
      ga ccg  acucc     cauauacggg accuga gua cac   c
cuucua  u   ga     guuca          u      c   c   gac 

>dre-mir-430c-2 (-23.90)   [dre-miR-430c:48-69]

cac        c        c         gauu  ucc 
   auuaagau acuucaaa aggagcauu    ug   u
   |||||||| |||||||| |||||||||    ||   u
   uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaa        A        C         --AU  uug 

>dre-mir-430c-3 (-23.90)   [dre-miR-430c:48-69]

cac        c        c         gauu  ucc 
   auuaagau acuucaaa aggagcauu    ug   u
   |||||||| |||||||| |||||||||    ||   u
   uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaa        A        C         --AU  uug 

>dre-mir-430c-4 (-23.90)   [dre-miR-430c:48-69]

cac        c        c         gauu  ucc 
   auuaagau acuucaaa aggagcauu    ug   u
   |||||||| |||||||| |||||||||    ||   u
   uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaa        A        C         --AU  uug 

>dre-mir-430c-5 (-23.90)   [dre-miR-430c:48-69]

cac        c        c         gauu  ucc 
   auuaagau acuucaaa aggagcauu    ug   u
   |||||||| |||||||| |||||||||    ||   u
   uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaa        A        C         --AU  uug 

>dre-mir-430c-6 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-7 (-22.90)   [dre-miR-430c:45-66]

        c        c         gauu  ucc 
auuaagau acuucaaa aggagcauu    ug   u
|||||||| |||||||| |||||||||    ||   u
uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
        A        C         --AU  uug 

>dre-mir-430c-8 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-9 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-10 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-11 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-12 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-13 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-14 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-15 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-16 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-17 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-18 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-19 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-20 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430c-21 (-23.60)   [dre-miR-430c:45-66]

---------        c        c         gauu  ucc 
         auuaagau acuucaaa aggagcauu    ug   u
         |||||||| |||||||| |||||||||    ||   u
         uaauuuuG UGGGGUUU UCUUCGUGA    ac   u
gaacaggaa        A        C         --AU  uug 

>dre-mir-430a-2 (-29.80)   [dre-miR-430a:50-71]

      -auc g      c     -      g   ug   gc 
gucacu    g uacccu acaaa ggcacu acu  gau  u
||||||    | |||||| ||||| |||||| |||  |||   
caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      acuu G      U     A      A   --   au 

>dre-mir-430a-3 (-29.80)   [dre-miR-430a:50-71]

      -auc g      c     -      g   ug   gc 
gucacu    g uacccu acaaa ggcacu acu  gau  u
||||||    | |||||| ||||| |||||| |||  |||   
caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      acuu G      U     A      A   --   au 

>dre-mir-430a-4 (-23.20)   [dre-miR-430a:46-67]

----cuaucgg      c     -      g   uu      
           uacccu acaaa agcacu acu  gaugc 
           |||||| ||||| |||||| |||  |||| u
           AUGGGG UGUUU UCGUGA Ugg  uuaug 
agugaacuuuG      U     A      A   -u      

>dre-mir-430a-5 (-43.20)   [dre-miR-430a:76-97]

      g     -aaucu  u  uauu      -auc g      c     -      g   ug   gc 
ggacaa guuuu      gc ac    gucacu    g uacccu acaaa ggcacu acu  gau  u
|||||| |||||      || ||    ||||||    | |||||| ||||| |||||| |||  |||   
ucuguu uaaga      cg ug    caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      g     gaacau  -  --uc      acuu G      U     A      A   --   au 

>dre-mir-430a-6 (-43.20)   [dre-miR-430a:76-97]

      g     -aaucu  u  uauu      -auc g      c     -      g   ug   gc 
ggacaa guuuu      gc ac    gucacu    g uacccu acaaa ggcacu acu  gau  u
|||||| |||||      || ||    ||||||    | |||||| ||||| |||||| |||  |||   
ucuguu uaaga      cg ug    caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      g     gaacau  -  --uc      acuu G      U     A      A   --   au 

>dre-mir-430a-7 (-43.20)   [dre-miR-430a:76-97]

      g     -aaucu  u  uauu      -auc g      c     -      g   ug   gc 
ggacaa guuuu      gc ac    gucacu    g uacccu acaaa ggcacu acu  gau  u
|||||| |||||      || ||    ||||||    | |||||| ||||| |||||| |||  |||   
ucuguu uaaga      cg ug    caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      g     gaacau  -  --uc      acuu G      U     A      A   --   au 

>dre-mir-430a-8 (-43.20)   [dre-miR-430a:76-97]

      g     -aaucu  u  uauu      -auc g      c     -      g   ug   gc 
ggacaa guuuu      gc ac    gucacu    g uacccu acaaa ggcacu acu  gau  u
|||||| |||||      || ||    ||||||    | |||||| ||||| |||||| |||  |||   
ucuguu uaaga      cg ug    caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      g     gaacau  -  --uc      acuu G      U     A      A   --   au 

>dre-mir-430a-9 (-43.20)   [dre-miR-430a:76-97]

      g     -aaucu  u  uauu      -auc g      c     -      g   ug   gc 
ggacaa guuuu      gc ac    gucacu    g uacccu acaaa ggcacu acu  gau  u
|||||| |||||      || ||    ||||||    | |||||| ||||| |||||| |||  |||   
ucuguu uaaga      cg ug    caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      g     gaacau  -  --uc      acuu G      U     A      A   --   au 

>dre-mir-430a-10 (-43.20)   [dre-miR-430a:76-97]

      g     -aaucu  u  uauu      -auc g      c     -      g   ug   gc 
ggacaa guuuu      gc ac    gucacu    g uacccu acaaa ggcacu acu  gau  u
|||||| |||||      || ||    ||||||    | |||||| ||||| |||||| |||  |||   
ucuguu uaaga      cg ug    caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      g     gaacau  -  --uc      acuu G      U     A      A   --   au 

>dre-mir-430a-11 (-43.20)   [dre-miR-430a:76-97]

      g     -aaucu  u  uauu      -auc g      c     -      g   ug   gc 
ggacaa guuuu      gc ac    gucacu    g uacccu acaaa ggcacu acu  gau  u
|||||| |||||      || ||    ||||||    | |||||| ||||| |||||| |||  |||   
ucuguu uaaga      cg ug    caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      g     gaacau  -  --uc      acuu G      U     A      A   --   au 

>dre-mir-430a-12 (-26.00)   [dre-miR-430a:50-71]

   u  -auc g      c     -      g   uu      
guc cu    g uacccu acaaa agcacu acu  gaugc 
||| ||    | |||||| ||||| |||||| |||  |||| u
cag ga    u AUGGGG UGUUU UCGUGA Ugg  uuaug 
   u  acuu G      U     A      A   -u      

>dre-mir-430a-13 (-26.00)   [dre-miR-430a:50-71]

   u  -auc g      c     -      g   uu      
guc cu    g uacccu acaaa agcacu acu  gaugc 
||| ||    | |||||| ||||| |||||| |||  |||| u
cag ga    u AUGGGG UGUUU UCGUGA Ugg  uuaug 
   u  acuu G      U     A      A   -u      

>dre-mir-430a-14 (-26.00)   [dre-miR-430a:50-71]

   u  -auc g      c     -      g   uu      
guc cu    g uacccu acaaa agcacu acu  gaugc 
||| ||    | |||||| ||||| |||||| |||  |||| u
cag ga    u AUGGGG UGUUU UCGUGA Ugg  uuaug 
   u  acuu G      U     A      A   -u      

>dre-mir-430a-15 (-26.00)   [dre-miR-430a:50-71]

   u  -auc g      c     -      g   uu      
guc cu    g uacccu acaaa agcacu acu  gaugc 
||| ||    | |||||| ||||| |||||| |||  |||| u
cag ga    u AUGGGG UGUUU UCGUGA Ugg  uuaug 
   u  acuu G      U     A      A   -u      

>dre-mir-430a-16 (-26.00)   [dre-miR-430a:50-71]

   u  -auc g      c     -      g   uu      
guc cu    g uacccu acaaa agcacu acu  gaugc 
||| ||    | |||||| ||||| |||||| |||  |||| u
cag ga    u AUGGGG UGUUU UCGUGA Ugg  uuaug 
   u  acuu G      U     A      A   -u      

>dre-mir-430a-17 (-26.00)   [dre-miR-430a:50-71]

   u  -auc g      c     -      g   uu      
guc cu    g uacccu acaaa agcacu acu  gaugc 
||| ||    | |||||| ||||| |||||| |||  |||| u
cag ga    u AUGGGG UGUUU UCGUGA Ugg  uuaug 
   u  acuu G      U     A      A   -u      

>dre-mir-430a-18 (-29.70)   [dre-miR-430a:57-78]

   cau    u  -auc g      c     -      g   uu      
cac   uguc cu    g uacccu acaaa agcacu acu  gaugc 
|||   |||| ||    | |||||| ||||| |||||| |||  |||| u
gug   acag ga    u AUGGGG UGUUU UCGUGA Ugg  uuaug 
   --u    u  auuu G      U     A      A   -u      

>dre-mir-430a-19 (-29.70)   [dre-miR-430a:57-78]

   cau    u  -auc g      c     -      g   uu      
cac   uguc cu    g uacccu acaaa agcacu acu  gaugc 
|||   |||| ||    | |||||| ||||| |||||| |||  |||| u
gug   acag ga    u AUGGGG UGUUU UCGUGA Ugg  uuaug 
   --u    u  auuu G      U     A      A   -u      

>dre-mir-430a-20 (-43.90)   [dre-miR-430a:76-97]

      g     aauc  cu  uauu      -auc g      c     -      g   ug   gc 
ggacaa guuuu    ug  gc    gucacu    g uacccu acaaa ggcacu acu  gau  u
|||||| |||||    ||  ||    ||||||    | |||||| ||||| |||||| |||  |||   
ucuguu uaaga    ac  cg    caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      g     --ga  au  uguc      acuu G      U     A      A   --   au 

>dre-mir-430a-21 (-43.90)   [dre-miR-430a:76-97]

      g     aauc  cu  uauu      -auc g      c     -      g   ug   gc 
ggacaa guuuu    ug  gc    gucacu    g uacccu acaaa ggcacu acu  gau  u
|||||| |||||    ||  ||    ||||||    | |||||| ||||| |||||| |||  |||   
ucuguu uaaga    ac  cg    caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      g     --ga  au  uguc      acuu G      U     A      A   --   au 

>dre-mir-430a-22 (-37.20)   [dre-miR-430a:75-96]

     g     ag c  c   cauu   u  -auc g      c     -      gacu ug  gc 
gacaa auuuu  u ug cac    guc cu    g uacccu acaaa agcacu    u  au  u
||||| |||||  | || |||    ||| ||    | |||||| ||||| ||||||    |  ||   
cuguu uaaga  a au gug    cag ga    u AUGGGG UGUUU UCGUGA    g  ua  g
     g     ga c  c   --uc   u  acuu G      U     A      --AU gu  au 

>dre-mir-430a-23 (-25.40)   [dre-miR-430a:77-98]

uuuaaau        a   u    cuuu   aa      ------  c        u 
       aaacuauu ccg cagg    cac  gccagc      cu aaaguuug u
       |||||||| ||| ||||    |||  ||||||      || ||||||||  
       uuuGAUGG GGU GUUU    GUG  Ugguug      ga uuucaaac c
agugaac        -   U    -AUC   AA      aucuaa  a        u 

>dre-mir-430i-1 (-19.30)   [dre-miR-430i:50-71]

   u  -auc g   -  uc     -      g   uu      
guc cu    g uac cc  acaaa agcacu acu  gaugc 
||| ||    | ||| ||  ||||| |||||| |||  |||| u
cag ga    u AUG GG  UGUUU UCGUGA Ugg  uuaug 
   u  acuu G   C  -U     A      A   -u      

>dre-mir-430i-2 (-19.30)   [dre-miR-430i:50-71]

   u  -auc g   -  uc     -      g   uu      
guc cu    g uac cc  acaaa agcacu acu  gaugc 
||| ||    | ||| ||  ||||| |||||| |||  |||| u
cag ga    u AUG GG  UGUUU UCGUGA Ugg  uuaug 
   u  acuu G   C  -U     A      A   -u      

>dre-mir-430i-3 (-19.30)   [dre-miR-430i:50-71]

   u  -auc g   -  uc     -      g   uu      
guc cu    g uac cc  acaaa agcacu acu  gaugc 
||| ||    | ||| ||  ||||| |||||| |||  |||| u
cag ga    u AUG GG  UGUUU UCGUGA Ugg  uuaug 
   u  acuu G   C  -U     A      A   -u      

>dre-mir-430b-2 (-30.40)   [dre-miR-430b:49-71]

    u  g   a          --     u      uuuaa 
cagu ga guc acucuaacuu  uagca cuuucu     g
|||| || ||| ||||||||||  ||||| ||||||      
gucg uu uaG UGGGGUUGAA  AUCGU GAAAga     c
    u  g   A          CU     -      ugaaa 

>dre-mir-430b-3 (-30.40)   [dre-miR-430b:49-71]

    u  g   a          --     u      uuuaa 
cagu ga guc acucuaacuu  uagca cuuucu     g
|||| || ||| ||||||||||  ||||| ||||||      
gucg uu uaG UGGGGUUGAA  AUCGU GAAAga     c
    u  g   A          CU     -      ugaaa 

>dre-mir-430b-4 (-30.40)   [dre-miR-430b:49-71]

    u  g   a          --     u      uuuaa 
cagu ga guc acucuaacuu  uagca cuuucu     g
|||| || ||| ||||||||||  ||||| ||||||      
gucg uu uaG UGGGGUUGAA  AUCGU GAAAga     c
    u  g   A          CU     -      ugaaa 

>dre-mir-430b-6 (-33.80)   [dre-miR-430b:49-71]

    u      a          --     u      -   a 
cagu gacguc acucuaacuu  uagca cuuucu uuu a
|||| |||||| ||||||||||  ||||| |||||| ||| g
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga gag c
    u      A          CU     -      u   a 

>dre-mir-430b-7 (-33.80)   [dre-miR-430b:49-71]

    u      a          --     u      -   a 
cagu gacguc acucuaacuu  uagca cuuucu uuu a
|||| |||||| ||||||||||  ||||| |||||| ||| g
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga gag c
    u      A          CU     -      u   a 

>dre-mir-430b-8 (-33.80)   [dre-miR-430b:49-71]

    u      a          --     u      -   a 
cagu gacguc acucuaacuu  uagca cuuucu uuu a
|||| |||||| ||||||||||  ||||| |||||| ||| g
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga gag c
    u      A          CU     -      u   a 

>dre-mir-430b-9 (-33.80)   [dre-miR-430b:49-71]

    u      a          --     u      -   a 
cagu gacguc acucuaacuu  uagca cuuucu uuu a
|||| |||||| ||||||||||  ||||| |||||| ||| g
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga gag c
    u      A          CU     -      u   a 

>dre-mir-430b-10 (-34.00)   [dre-miR-430b:49-71]

    u      a          --     u      uuuaa 
cagu gacauc acucuaacuu  uagca cuuucu     g
|||| |||||| ||||||||||  ||||| ||||||      
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga     c
    u      A          CU     -      ugaaa 

>dre-mir-430b-11 (-34.00)   [dre-miR-430b:49-71]

    u      a          --     u      uuuaa 
cagu gacauc acucuaacuu  uagca cuuucu     g
|||| |||||| ||||||||||  ||||| ||||||      
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga     c
    u      A          CU     -      ugaaa 

>dre-mir-430b-12 (-34.00)   [dre-miR-430b:49-71]

    u      a          --     u      uuuaa 
cagu gacauc acucuaacuu  uagca cuuucu     g
|||| |||||| ||||||||||  ||||| ||||||      
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga     c
    u      A          CU     -      ugaaa 

>dre-mir-430b-13 (-34.00)   [dre-miR-430b:49-71]

    u      a          --     u      uuuaa 
cagu gacauc acucuaacuu  uagca cuuucu     g
|||| |||||| ||||||||||  ||||| ||||||      
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga     c
    u      A          CU     -      ugaaa 

>dre-mir-430b-14 (-34.00)   [dre-miR-430b:49-71]

    u      a          --     u      uuuaa 
cagu gacauc acucuaacuu  uagca cuuucu     g
|||| |||||| ||||||||||  ||||| ||||||      
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga     c
    u      A          CU     -      ugaaa 

>dre-mir-430b-15 (-34.00)   [dre-miR-430b:49-71]

    u      a          --     u      uuuaa 
cagu gacauc acucuaacuu  uagca cuuucu     g
|||| |||||| ||||||||||  ||||| ||||||      
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga     c
    u      A          CU     -      ugaaa 

>dre-mir-430b-16 (-34.00)   [dre-miR-430b:49-71]

    u      a          --     u      uuuaa 
cagu gacauc acucuaacuu  uagca cuuucu     g
|||| |||||| ||||||||||  ||||| ||||||      
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga     c
    u      A          CU     -      ugaaa 

>dre-mir-430b-17 (-34.00)   [dre-miR-430b:49-71]

    u      a          --     u      uuuaa 
cagu gacauc acucuaacuu  uagca cuuucu     g
|||| |||||| ||||||||||  ||||| ||||||      
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga     c
    u      A          CU     -      ugaaa 

>dre-mir-430b-18 (-34.00)   [dre-miR-430b:49-71]

    u      a          --     u      uuuaa 
cagu gacauc acucuaacuu  uagca cuuucu     g
|||| |||||| ||||||||||  ||||| ||||||      
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga     c
    u      A          CU     -      ugaaa 

>dre-mir-430b-5 (-34.00)   [dre-miR-430b:49-71]

    u      a          --     u      uuuaa 
cagu gacauc acucuaacuu  uagca cuuucu     g
|||| |||||| ||||||||||  ||||| ||||||      
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga     c
    u      A          CU     -      ugaaa 

>dre-mir-430b-19 (-34.20)   [dre-miR-430b:49-71]

    u      a          --     u      -   a 
cagu gacauc acucuaacuu  uagca cuuucu uuu a
|||| |||||| ||||||||||  ||||| |||||| ||| g
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga gag c
    u      A          CU     -      c   a 

>dre-mir-430b-20 (-30.90)   [dre-miR-430b:49-71]

    u  g   a          --     u      u   a 
cagu ga guc acucuaacuu  uagca cuuucu uua g
|||| || ||| ||||||||||  ||||| |||||| |||  
guca uu uaG UGGGGUUGAA  AUCGU GAAAga gau c
    u  g   A          CU     -      u   a 

>dre-mir-430b-21 (-30.90)   [dre-miR-430b:49-71]

    u  g   a          --     u      u   a 
cagu ga guc acucuaacuu  uagca cuuucu uua g
|||| || ||| ||||||||||  ||||| |||||| |||  
guca uu uaG UGGGGUUGAA  AUCGU GAAAga gau c
    u  g   A          CU     -      u   a 

>dre-mir-430b-22 (-26.80)   [dre-miR-430b:49-71]

   uu  g   a          --     u      uuuaa 
cag  ga guc acucuaacuu  uagca cuuucu     g
|||  || ||| ||||||||||  ||||| ||||||      
guu  uu uaG UGGGGUUGAA  AUCGU GAAAga     c
   gu  g   A          CU     -      ugaaa 

>dre-mir-430b-23 (-26.80)   [dre-miR-430b:49-71]

   uu  g   a          --     u      uuuaa 
cag  ga guc acucuaacuu  uagca cuuucu     g
|||  || ||| ||||||||||  ||||| ||||||      
guu  uu uaG UGGGGUUGAA  AUCGU GAAAga     c
   gu  g   A          CU     -      ugaaa 

>dre-mir-430j (-24.70)   [dre-miR-430j:49-70]

    u  g   a       --cuu     u      uuuaa 
cagu ga auc acucuaa     uagca cuuucu     g
|||| || ||| |||||||     ||||| ||||||      
gucg uu uag UGGGGUU     AUCGU GAAAga     c
    u  g   A       AAACU     -      ugaaa 

>dre-mir-456 (-39.00)   [dre-miR-456:54-75]

     u      u    g     uu       acau ug   cc 
gcugg ugugug gcag caucu  ccagucu    g  gau  a
||||| |||||| |||| |||||  |||||||    |  |||   
cgacc augcAC UGUU GUAGA  GGUCGGA    C  cug  g
     c      -    G     UU       ---- gu   ag 

>dre-mir-457a (-42.20)   [dre-miR-457a:11-32]

ugc     a A         -UCA         gcu    uc 
   cugac g AGCAGCACA    AUAUUGGCA   gccc  u
   ||||| | |||||||||    |||||||||   ||||  c
   gacug c ucgucgugu    uaugaccgu   uggg  u
aca     c c         uugg         ---    uc 

>dre-mir-457b (-26.90)   [dre-miR-457b:11-32]

gaaug     A     C   UA         Gg    ug 
     uacua AGCAG ACA  AAUACUGGA  ugau  u
     ||||| ||||| |||  |||||||||  ||||   
     augau ucguc ugu  uuaugaccu  auug  g
ccaga     g     u   cg         --    ug 

>dre-mir-458 (-36.30)   [dre-miR-458:48-69]

     g  a    cg       c        --a   au 
gugca au gcag  ccauuua agagcuau   agc  c
||||| || ||||  ||||||| ||||||||   |||   
cacgu ua CGUC  GGUAAGU UCUCGAUA   uug  a
     a  c    AU       U        cug   au 

>dre-mir-459 (-37.10)   [dre-miR-459:11-32] [dre-miR-459*:52-73]

cc     cu          AG     AU       u   ac 
  ucuug  cUCAGUAACA  GAUUC  CCUGuug ggu  u
  |||||  ||||||||||  |||||  ||||||| |||   
  ggaau  GGGUCAUUGU  CUAAG  GGACaac cua  c
uu     uG          CU     --       -   aa 

>dre-mir-460 (-35.02)   [dre-miR-460-5p:11-32] [dre-miR-460-3p:48-69]

    u    -   U        CA A       gaaaa 
cucc cggc uCC GCAUUGUA  C CUGUGCG     c
|||| |||| ||| ||||||||  | |||||||     a
gagg gucG AGG UGUAACAU  G GACACgu     u
    u    U   -        AC C       acagg 

>dre-mir-461 (-16.32)   [dre-miR-461:11-32]

---      -aaa   A  AA         ----   CAAuc 
   auuuug    aUC GG  UGGGCUAAA    UGC     a
   ||||||    ||| ||  |||||||||    |||     a
   uaaaac    ugg cc  accugguuu    acg     a
gaa      auaa   a  ag         cuga   aaaua 

>ptc-MIR156a (-54.30)   [ptc-miR156a:11-30]

aaa a   a             -            gaaa   u    u   a 
   g aag cUGACAGAAGAGA GUGAGCACacac    gua augg aug a
   | ||| ||||||||||||| ||||||||||||    ||| |||| |||  
   c uuc gacugucuucucu cacucgugugug    cgu uacc uac g
-ca c   -             a            -gga   -    u   g 

>ptc-MIR156b (-60.00)   [ptc-miR156b:11-30]

guaag  a         -             a      acu   uu     a 
     gg ggUGACAGA AGAGAGUGAGCAC cagggu   uuc  gcaug c
     || ||||||||| ||||||||||||| ||||||   |||  ||||| a
     cc ccacugucu ucucucacucgug guuuca   aag  cguac u
-acca  -         a             c      ---   uu     c 

>ptc-MIR156c (-49.60)   [ptc-miR156c:11-30]

cauua   a         -    -        a        uauuu     a 
     gaa cUGACAGAA GAGA GUGAGCAC cagaggca     guaua a
     ||| ||||||||| |||| |||||||| ||||||||     |||||  
     cuu gacugucuu cucu cacucgug guuuucgu     cauau u
--gac   c         a    u        c        --uac     c 

>ptc-MIR156d (-43.30)   [ptc-miR156d:11-30]

guaa   a u       -    A   A    a      acu   uu     a 
    gug g UGACAGA AGAG GUG GCAC cagggu   uuc  gcaug c
    ||| | ||||||| |||| ||| |||| ||||||   |||  ||||| g
    uac c acugucu ucuc cac cgug guuucg   aag  cguac u
--ac   c c       a    c   c    c      ---   uu     u 

>ptc-MIR156e (-42.40)   [ptc-miR156e:11-30]

cauua   au        -     -       a        uauuu     a 
     gaa  UGACAGAA GAGAG UGAGCAC cagaggca     guaua a
     |||  |||||||| ||||| ||||||| ||||||||     |||||  
     cuu  acugucuu cucuu acucgug guuuucgu     cauau a
-agac   -c        u     u       c        --uac     u 

>ptc-MIR156f (-54.40)   [ptc-miR156f:11-30]

aga a   a             -            gaaa  u   u     a 
   g aag cUGACAGAAGAGA GUGAGCACacac    gc aau guaug a
   | ||| ||||||||||||| ||||||||||||    || ||| |||||  
   c uuc gacugucuucucu cacucgugugug    cg uua cauac a
-ua a   -             u            -gga  -   c     g 

>ptc-MIR156g (-50.50)   [ptc-miR156g:11-31]

----     uguugU           -            u  -   a     ugga 
    gguga      UGACAGAAGAU AGAGAGCACaga ga uga augca    g
    |||||      ||||||||||| |||||||||||| || ||| |||||    c
    ccacu      acugucuucug ucucucguguuu cu acu uacgu    u
acuu     ------           a            c  c   c     uaau 

>ptc-MIR156h (-46.70)   [ptc-miR156h:11-31]

----     ugcugU           -         u  c  -   a     ugga 
    gguga      UGACAGAAGAU AGAGAGCAC ga ga uga augca    g
    |||||      ||||||||||| ||||||||| || || ||| |||||    c
    ccacu      acugucuucug ucucucgug uu cu acu uacgu    u
acuu     ------           a         u  c  c   c     uaau 

>ptc-MIR156i (-40.40)   [ptc-miR156i:11-31]

---u      uugUU A      -              u  -  uuu g   ua 
    gugaug     G CAGAAG AUAGAGAGCACaga ga ug   u cag  g
    ||||||     | |||||| |||||||||||||| || ||   | |||   
    cacuac     c gucuuc uaucucucguguuu cu ac   a guc  a
cuuc      ----- -      g              c  c  ucu g   uc 

>ptc-MIR156j (-45.90)   [ptc-miR156j:11-31]

----     uguugU         -              u  -  au     aug 
    gguga      UGACAGAAG AUAGAGAGCACaga ga ug  augca   g
    |||||      ||||||||| |||||||||||||| || ||  |||||    
    ucacu      acugucuuc uaucucucguguuu cu ac  uacgu   a
acuu     ------         g              c  c  cc     cuc 

>ptc-MIR156k (-44.10)   [ptc-miR156k:11-30]

uuaugca  c          -   GG      ac  ug   u   u    a 
       ug UGACAGAAGA GAG  AGCACa  cc  uaa agc aaag g
       || |||||||||| |||  ||||||  ||  ||| ||| |||| a
       ac acugucuucu cuc  ucgugu  gg  guu ucg uuuc g
--aacca  c          u   uu      ca  uu   u   -    u 

>ptc-MIR159a (-79.30)   [ptc-miR159a:154-174]

gauua   ag           ga       u     -u   u  --       auu     g  a  c    g -u  a   u       a  a 
     ggg  uggagcuccuu  aguccaa agagg  ucu gc  uggguag   aagcu cu ag uaug a  cc cag ccuaucu uc a
     |||  |||||||||||  ||||||| |||||  ||| ||  |||||||   ||||| || || |||| |  || ||| ||||||| ||  
     ccc  AUCUCGAGGGA  UUAGGUU Uuucc  aga ug  auccguu   uucga ga uc auac u  gg guu ggauagg ag c
-aaua   aa           AG       -     cu   u  ua       -au     g  c  u    g uc  c   u       a  u 

>ptc-MIR159b (-78.42)   [ptc-miR159b:158-178]

gauuau  ag           ga       u     c  cu  --       auc     g     c    aauc  a   c       ccauc 
      gg  uggagcuccuu  aguccaa agaag uc  gc  uggguag   gagcu cugag uaug    cc cag ccuauca     a
      ||  |||||||||||  ||||||| ||||| ||  ||  |||||||   ||||| ||||| ||||    || ||| |||||||     g
      cc  AUCUCGAGGGA  UUAGGUU uuuuc ag  ug  auccauu   uucga gacuc auac    gg guc ggguagu     u
-aguuu  aa           AG       U     u  au  ua       -au     g     u    guuc  c   c       uuuac 

>ptc-MIR159c (-79.00)   [ptc-miR159c:154-174]

gauua   ag           ga       u     -u   u  --       auu     g  a  c    g -u  a   u       a  a 
     ggg  uggagcuccuu  aguccaa agagg  ucu gc  uggguag   aagcu cu ag uaug a  cc cag ccuaucu uc a
     |||  |||||||||||  ||||||| |||||  ||| ||  |||||||   ||||| || || |||| |  || ||| ||||||| ||  
     ccc  AUCUCGAGGGA  UUAGGUU Uuucc  aga ug  auccguu   uucga ga uc auac u  gg guu ggauagg ag c
-aaua   aa           AG       -     cu   u  ua       -au     g  c  u    g uc  c   u       a  c 

>ptc-MIR159d (-81.80)   [ptc-miR159d:165-185]

uuguaaauu        uu   ug      --       aa    a ug    uacu     g    uu    g u   uc       -c  -ag   au 
         ugggagcu  cuu  guucaa  aaugagg  agaa g  ggua    cgucu cuug  caug a acc  uggguug  gc   gau  a
         ||||||||  |||  ||||||  |||||||  |||| |  ||||    ||||| ||||  |||| | |||  |||||||  ||   |||   
         aUCCUCGA  GAA  UAGGUU  uugcuuu  ucuu c  ccgu    gcaga gaac  guac u ugg  auucgac  cg   uug  u
-cuauguac        GG   GU      Cu       cc    c gu    ---u     g    cg    g u   ga       au  gga   au 

>ptc-MIR159e (-88.30)   [ptc-miR159e:163-183]

accauuaa          g  -        au ug      ggugau   a      u   g   cuu    aau    gug   g     -  -a  c 
        auaggagcuu cu cacuccag  c  aaagga      agg aaccac ucu cua   caug   accc   ggu ugcgc gu  gc a
        |||||||||| || ||||||||  |  ||||||      ||| |||||| ||| |||   ||||   ||||   ||| ||||| ||  ||  
        uaUCCUCGAG GA GUGGGGUU  g  uuuucu      ucc uuggug aga gau   guac   uggg   ucg acgcg cg  ug u
-acccuga          G  A        Cu gu      ---agu   g      u   g   cgu    guc    -aa   g     u  ag  g 

>ptc-MIR159f (-93.50)   [ptc-miR159f:173-193]

-      ca  g        cc       -   cu      a   cgau   a       g  g    u     aau        -g       aauua  aacg 
 gaggcu  au gagcucuc  cacucca ugc  gaaagg guu    ggu gaccaug cu cuag ucaug   acccuugg  ugcgcag     gc    g
 ||||||  || ||||||||  ||||||| |||  |||||| |||    ||| ||||||| || |||| |||||   ||||||||  |||||||     ||     
 uucugg  uA CUCGAGGG  GUGAGGU Aug  uuuucc cag    cca uuggugc ga gauc aguac   ugggaauc  acgcguu     cg    u
u      --  G        AA       U   -u      -   --uc   -       a  g    c     guc        gg       -gaag  gacg 

>ptc-MIR160a (-56.30)   [ptc-miR160a:11-31]

acau    u    C       C          aa    -  a       uuu 
    gggu aUGC UGGCUCC UGUAUGCCAc  gcaa ag ccaaucu   g
    |||| |||| ||||||| ||||||||||  |||| || |||||||    
    cuca uacg accgagg gcgugcggug  cguu uc gguuaga   u
-ucu    -    a       a          gc    g  -       uuu 

>ptc-MIR160b (-51.30)   [ptc-miR160b:11-31]

auauuau      C       CU          ug a   c   a   a 
       augUGC UGGCUCC  GUAUGCCAuu  c gag cca cgg u
       |||||| |||||||  ||||||||||  | ||| ||| |||  
       uauacg accgagg  uaugcgguag  g cuc ggu gcu c
--acgcu      u       ag          gu c   c   a   c 

>ptc-MIR160c (-51.90)   [ptc-miR160c:11-31]

auauuau      C       CU          ug a   c   c   u 
       augUGC UGGCUCC  GUAUGCCAuu  c gag cca cgg u
       |||||| |||||||  ||||||||||  | ||| ||| |||  
       uauacg accgagg  uaugcgguag  g cuc ggu gcu c
--acacu      u       ag          gu c   c   a   u 

>ptc-MIR160d (-53.10)   [ptc-miR160d:11-31]

aaau    u    C       C          -a   -a  a       cuuc 
    gggu aUGC UGGCUCC UGUAUGCCAc  gca  ag ccaaucu    u
    |||| |||| ||||||| ||||||||||  |||  || |||||||     
    cuca uacg accgagg gcgugcggug  cgu  uc gguuaga    g
-ucu    -    a       a          gc   cg  -       uucu 

>ptc-MIR160e (-60.70)   [ptc-miR160e:11-31]

aagaa        C         GA      uc       c       ag 
     uggccUGC UGGCUCCCU  AUGCCA  uaggaag uugucaa  a
     |||||||| |||||||||  ||||||  ||||||| |||||||   
     accggacg gcugagggg  uacggu  aucuuuc aacgguu  g
--uua        a         ag      uu       c       gu 

>ptc-MIR160f (-53.30)   [ptc-miR160f:11-31]

aagaau       C         GA      uc   ga  c       ag 
      ggucUGC UGGCUCCCU  AUGCCA  uag  ag uugucaa  a
      ||||||| |||||||||  ||||||  |||  || |||||||   
      ccggacg acugagggg  uacggu  auc  uc aacgguu  g
--caac       c         ag      ca   uc  c       gu 

>ptc-MIR160g (-50.40)   [ptc-miR160g:11-31]

--g    caau    C       -   G          a   auuu      u 
   ggau    cUGC UGGCUCC CUG AUGCCAacua gaa    gucgag g
   ||||    |||| ||||||| ||| |||||||||| |||    ||||||  
   ccug    gacg acugagg gac uacgguugau cuu    caguuc g
caa    ----    u       a   -          a   --cu      u 

>ptc-MIR160h (-45.50)   [ptc-miR160h:11-31]

ga  c u      C      CC           ug -aua  u    aga 
  uc c gugUGC UGGCUC  UGCAUGCCAuu  c    gc cauc   a
  || | |||||| ||||||  |||||||||||  |    || ||||    
  ag g cguacg acugag  acgugcgguag  g    cg gugg   c
--  u u      u      ca           gu guuc  -    cug 

>ptc-MIR162a (-44.50)   [ptc-miR162a:78-98]

u      a a     g    c    c       uc   c  gccaa        u 
 gggaag c cugga gcag gguu aucgauc  uuc ug     uuuuuugu u
 |||||| | ||||| |||| |||| |||||||  ||| ||     |||||||| a
 uccuuc g GACCU CGUC CCAA UAGCUag  aag ac     aaaaagca g
u      - c     A    U    A       cc   u  -----        c 

>ptc-MIR162b (-42.30)   [ptc-miR162b:78-98]

uga    a       g    c    c       uu   c  aagauuuuu      u 
   gaag cacugga gcag gguu aucgauc  uuc ug         uuguuu a
   |||| ||||||| |||| |||| |||||||  ||| ||         |||||| c
   cuuc guGACCU CGUC CCAA UAGCUag  aag ac         aacaag a
ucc    -       A    U    A       cc   c  ---------      c 

>ptc-MIR162c (-42.30)   [ptc-miR162c:78-98]

uga    a       g    c    c       uu   c  aagauuuuu      u 
   gaag cacugga gcag gguu aucgauc  uuc ug         uuguuu a
   |||| ||||||| |||| |||| |||||||  ||| ||         |||||| c
   cuuc guGACCU CGUC CCAA UAGCUag  aag ac         aacaag a
ucc    -       A    U    A       cc   c  ---------      c 

>ptc-MIR164a (-37.60)   [ptc-miR164a:11-31]

ggu   u  c        C     A       aauccugauga    c 
   ucc ug UGGAGAAG AGGGC CGUGCAa           agug u
   ||| || |||||||| ||||| |||||||           ||||  
   ggg ac accucuuc ucucg gcacguu           ucac u
--c   c  a        u     c       -----------    a 

>ptc-MIR164b (-57.70)   [ptc-miR164b:11-31]

gugag  a    GA    CA         CAcu        augcacacagagagggagacgcauuucuugcuggaguuac 
     ca gaUG  GAAG  GGGCACGUG    acuaacuc                                        g
     || ||||  ||||  |||||||||    ||||||||                                         
     gu cuac  cuuc  uccguguac    ugauugag                                        a
--cua  a    uc    ug         uuau        ugaccucgauuguuuuaguuaucauccauucucagcauug 

>ptc-MIR164c (-40.40)   [ptc-miR164c:11-31]

ua    u  c        CA             -cucu  c 
  gcuc ug UGGAGAAG  GGGCACGUGCAag     cu c
  |||| || ||||||||  |||||||||||||     || u
  uggg ac accucuuc  cucgugcacguuc     ga c
--    u  a        cc             cuuuc  a 

>ptc-MIR164d (-47.40)   [ptc-miR164d:11-31]

ug     c c     A  CA             --auc    -     uuc 
  gcuca g UGGAG AG  GGGCACGUGCAaa     cuuc ucggc   c
  ||||| | ||||| ||  |||||||||||||     |||| |||||    
  ugagu c accuc uc  cucgugcacguuu     gaag agucg   a
--     a a     c  cc             cucac    u     uag 

>ptc-MIR164e (-55.50)   [ptc-miR164e:11-31]

gugag  a     A    CA         CAuu        augcacacagagugagagagacauuucuugcuggag 
     ca gaUGG GAAG  GGGCACGUG    acuaacuc                                    u
     || ||||| ||||  |||||||||    ||||||||                                    u
     gu cuacc cuuc  uccguguac    ugauugag                                    a
--cua  a     c    ug         uucu        cgacuucgguuguguuagauaucauccauucucagu 

>ptc-MIR164f (-48.70)   [ptc-miR164f:11-31]

ugag   u        A C           U   u       -  u 
    cca gcUGGAGA G AGGGCACAUGC aaa cuaucag cu g
    ||| |||||||| | ||||||||||| ||| ||||||| ||  
    ggu cgaccucu u ucucguguacg uuu gauaguc ga a
--ca   u        c a           -   u       u  a 

>ptc-MIR166a (-56.50)   [ptc-miR166a:135-155]

uuu uu   a        uu      cu   g    -cu    -----g    u     uuua       uga ug    u  uuua 
   c  uug ggggaaug  gucugg  cga guca   aaug      gauc augau    ucucaau   u  auuu cu    a
   |  ||| ||||||||  ||||||  ||| ||||   ||||      |||| |||||    |||||||   |  |||| ||     
   g  aac CCCCUUAC  CGGACC  GCU uagu   uuau      cuag uacua    agaguua   a  uaaa ga    a
-uu uu   c        UU      AG   g    aau    auucaa    -     -uag       --- gu    u  ucuu 

>ptc-MIR166b (-47.00)   [ptc-miR166b:77-97]

uaacu    a     u  cu           u        u   aa  u   a 
     guug gggga ug  gucugguucga gucauuca gug  gc uua c
     |||| ||||| ||  ||||||||||| |||||||| |||  || |||  
     caac CCCCU AC  CGGACCAGGCU uagugagu uau  ug aau a
-auau    c     U  UU           u        -   ga  u   u 

>ptc-MIR166c (-57.80)   [ptc-miR166c:105-125]

cuuuuu   a        uu      cu   g      uucuugaucagucugaucaaguguucua 
      uug ggggaaug  gucugg  cga gacucu                            u
      ||| ||||||||  ||||||  ||| ||||||                            c
      aac CCCCUUAC  CGGACC  GCU cuggga                            u
-uuauu   c        UU      AG   g      uuguguacuagauucuauaaucuagauu 

>ptc-MIR166d (-52.30)   [ptc-miR166d:76-96]

cg  a             uu g    cu        a    aaga     cu 
  ug guugaggggaaug  g cugg  cgaagcuu agca    guuuu  c
  || |||||||||||||  | ||||  |||||||| ||||    |||||  u
  ac caacuCCCCUUAC  C GACC  GCUucgga uugu    caaag  c
ua  -             UU G    AG        a    -caa     aa 

>ptc-MIR166e (-47.20)   [ptc-miR166e:77-97]

uaac     a     u  uc           u        ugagaagcucaa 
    uguug gggga ug  gucugguucga gucauuca            a
    ||||| ||||| ||  ||||||||||| ||||||||            c
    acaac CCCCU AC  CGGACCAGGCU uaguaagu            a
-gua     c     U  UU           u        uauaaugcaaau 

>ptc-MIR166f (-53.10)   [ptc-miR166f:76-96]

g    g            uu g    cu        a    aaga     cu 
 gugu uugaggggaaug  g cugg  cgaagcuu agca    guuuc  a
 |||| ||||||||||||  | ||||  |||||||| ||||    |||||  a
 uaca aacuCCCCUUAC  C GACC  GCUucgga uugu    caaag  c
a    -            UU G    AG        a    -caa     ua 

>ptc-MIR166g (-53.30)   [ptc-miR166g:74-94]

acac     a        cu             c      ccu     gcac 
    aguug ggggaaug  gucugguucgaga cauuca   gaaga    g
    ||||| ||||||||  ||||||||||||| ||||||   |||||    c
    ucaac CCCCUUAC  CGGACCAGGCUcu gugagu   uuucu    a
-aac     c        UU             a      ---     acuu 

>ptc-MIR166h (-41.66)   [ptc-miR166h:72-92]

acac     a        cu     a       c     acuuuaagcac 
    aguug ggggaaug  gucug uucgaga cauuc           a
    ||||| ||||||||  ||||| ||||||| |||||            
    ucaac CCCCUUAC  CGGAC AGGCUcu guaag           c
-aac     c        UU     C       a     cuuucuacuua 

>ptc-MIR166i (-40.46)   [ptc-miR166i:74-94]

u  cuu            uu         aaggccuggccaccccaugucu 
 gu   uugaggggaaug  guuugguuc                      u
 ||   ||||||||||||  |||||||||                       
 ca   aacuCCCCUUAC  CGGACCAGG                      g
u  -uu            UU         CUccuguacuauaaaauuuaag 

>ptc-MIR166j (-50.90)   [ptc-miR166j:114-134]

ucuuuu   a        uu      cu   g      ---u   uc        -  --uc  -   --u    c 
      uug ggggaaug  gucugg  cga gacuuu    ugu  aucaaucu aa    ga acu   ucua c
      ||| ||||||||  ||||||  ||| ||||||    |||  |||||||| ||    || |||   ||||  
      aac CCCCUUAC  CGGACC  GCU uuggga    gca  uaguuaga uu    cu uga   agau u
-uuacu   c        UU      AG   g      uuau   -c        a  uauu  a   ucu    g 

>ptc-MIR166k (-50.90)   [ptc-miR166k:114-134]

ucuuuu   a        uu      cu   g      ---u   uc        -  --uc  -   --u    c 
      uug ggggaaug  gucugg  cga gacuuu    ugu  aucaaucu aa    ga acu   ucua c
      ||| ||||||||  ||||||  ||| ||||||    |||  |||||||| ||    || |||   ||||  
      aac CCCCUUAC  CGGACC  GCU uuggga    gca  uaguuaga uu    cu uga   agau u
-uuacu   c        UU      AG   g      uuau   -c        a  uauu  a   ucu    g 

>ptc-MIR166l (-38.30)   [ptc-miR166l:68-88]

uaacuu   u  u     uu         a   -    --gc     ca 
      uug gg gaaug  gucugguuc agg caug    cacca  u
      ||| || |||||  ||||||||| ||| ||||    |||||  c
      aac CC CUUAC  CGGACCAGG Ucc guau    guggu  u
-uaauu   u  C     UU         C   u    auaa     uc 

>ptc-MIR166m (-48.20)   [ptc-miR166m:76-96]

uga     u         uc     ac      c   agg      gaa  a 
   ggaug gggggaaug  gucug  ucgaga aac   uaaacu   gg a
   ||||| |||||||||  |||||  |||||| |||   ||||||   || u
   ccuac uCCCCUUAC  CGGAC  GGCUcu uug   auuuga   cc g
aca     -         UU     CA      c   aga      -gg  g 

>ptc-MIR166n (-88.62)   [ptc-miR166n:303-323]

aa       uu             a   a     ----cu  --ucuc   cguuaacuuagucucuguuacuguuagguuuucauuacugaguguauuugcagcccccuugucugauuuuagcaucaugagaguaggaagugcuggugaucauaggguuugguucaa 
  ggggugu  ggaaugaaguuug ucc agauc      ug      ucc                                                                                                                     g
  |||||||  ||||||||||||| ||| |||||      ||      |||                                                                                                                      
  uuccaca  CCUUACUUCGGAC AGG Ucuag      ac      agg                                                                                                                     a
-g       UU             C   C     uaaaau  uauaaa   uuuauauuaaugaacguucuaguuuggauuuuuaauuguucuucauucccuauuaauucugaugaugucuaauggucgauccuguguccucucuauauuucucuucucaguuuaccu 

>ptc-MIR166o (-86.80)   [ptc-miR166o:296-316]

aagg     uu             a   a     cuugucucucccguucauuuaguaauguuacugcuagguuucgcuauguauugaucaguguauacacagcagcuacgagcuaggccuuguguuucagauuuuagcuucaauauagagugagcacuag 
    ggugu  ggaaugaaguuug ucc agauc                                                                                                                               u
    |||||  ||||||||||||| ||| |||||                                                                                                                               g
    ccaca  CCUUACUUCGGAC AGG Ucuag                                                                                                                               a
-aag     UU             C   C     ucaaguacuacaaaugauuuauauuauugaacguucuauuuuggauucuuaauuguccuucaucccuagacuaauuuuuaaauuuucgaucgaucguguguacucuaccuagaacuuaguuugagau 

>ptc-MIR166p (-53.30)   [ptc-miR166p:118-138]

uaa     ag     c cu      gu     -    gg  gccaugauuauacauaaauggcauuaucugau 
   gguug  aggaa g  gucugg  cgagg ucau  ag                                g
   |||||  ||||| |  ||||||  ||||| ||||  ||                                 
   ccaac  UCCUU C  CGGACC  GCUcu agua  uc                                a
-ua     cU     A CU      AG     u    aa  caaguucuguccacguagcuaauagacccgac 

>ptc-MIR166q (-67.54)   [ptc-miR166q:123-143]

uuag    ag       uu      cu     -         -c  u   -         auggcauuaccugaug 
    guug  aggaaug  gucugg  cgagg ucauugagg  ca gau uauacagac                a
    ||||  |||||||  ||||||  ||||| |||||||||  || ||| |||||||||                c
    caac  UCCUUAC  CGGACC  GCUcu aguagcucc  gu cua gugugucug                a
-aaa    cU       UU      AG     u         au  u   u         aaacuuaaaagagccg 

>ptc-MIR167a (-40.30)   [ptc-miR167a:11-31]

cac      u      UG   G          --  -      cuu 
   uagcag UGAAGC  CCA CAUGAUCUAa  cu uccuug   c
   |||||| ||||||  ||| ||||||||||  || ||||||   u
   guuguc acuuug  ggu guacuagauu  gg aggaac   u
--a      c      gu   -          ua  u      uau 

>ptc-MIR167b (-44.40)   [ptc-miR167b:11-31]

ag    aa     A    - -            u  uu      agaaa 
  ggaa  agUGA GCUG C CAGCAUGAUCUA cu  gguuag     g
  ||||  ||||| |||| | |||||||||||| ||  ||||||      
  ccuu  ucacu cgac g gucguacuggau ga  ccaauc     a
--    cc     c    a u            c  uc      aggaa 

>ptc-MIR167c (-43.20)   [ptc-miR167c:11-31]

cac      u           G          auuaa  -     cu 
   uagcag UGAAGCUGCCA CAUGAUCUAa     cc uccuu  u
   |||||| ||||||||||| ||||||||||     || |||||  u
   gucguc acuuugauggu guacuagauu     gg aggaa  a
--a      c           -          ----a  u     cu 

>ptc-MIR167d (-40.16)   [ptc-miR167d:11-31]

ag    aa     A    - -C           u  uu      agaaggauagaag g 
  ggaa  ggUGA GCUG C  AGCAUGAUCUA cu  gguuag             c a
  ||||  ||||| |||| |  ||||||||||| ||  ||||||             |  
  ccuu  ucacu cgac g  ucguacuggau ga  ccaauc             g a
--    cc     c    a uc           c  uc      -----------aa a 

>ptc-MIR167e (-40.94)   [ptc-miR167e:11-31]

cac      u           G         aa       uaauuu 
   uaguag UGAAGCUGCCA CAUGAUCUG  cuuuccu      u
   |||||| ||||||||||| |||||||||  |||||||       
   guuauc acuuugauggu guacuagau  gaaaggg      c
--a      u           -         ca       cauauc 

>ptc-MIR167f (-39.60)   [ptc-miR167f:11-31]

cucuau   u           G        -Uag c      cu 
      cag UGAAGCUGCCA CAUGAUCU    c uuccuc  u
      ||| ||||||||||| ||||||||    | ||||||  u
      guc acuuugacggu guacuaga    g aaggag  g
--uguu   c           -        caaa a      uu 

>ptc-MIR167g (-39.14)   [ptc-miR167g:11-31]

c   a    u           G        Uaaccuc    cu 
 acu ucag UGAAGCUGCCA CAUGAUCU       ccuc  u
 ||| |||| ||||||||||| ||||||||       ||||  u
 uga aguc acuuugacggu guacuaga       ggag  g
-   -    c           -        caagaaa    cu 

>ptc-MIR167h (-41.14)   [ptc-miR167h:11-31]

cgcuau   u           A         ag       uaauuu 
      uag UGAAGCUGCCA CAUGAUCUG  cuuuccu      u
      ||| ||||||||||| |||||||||  |||||||       
      auc acuuugacggu guacuagau  gaaagga      c
--aguu   c           -         ca       cauauc 

>ptc-MIR168a (-61.00)   [ptc-miR168a:11-31]

ggu          C          U     A ug     g ---ga    auugccagauggcucgacaugacugguuguug 
   cucugauUCG UUGGUGCAGG CGGGA c  auucg c     uuug                                u
   |||||||||| |||||||||| ||||| |  ||||| |     ||||                                 
   gaggcuaagu aacuacguuc gcccu g  uaagc g     aaac                                g
--g          c          c     a gu     - auaag    aaaaaaaaggacaaaggaaggaaaagaaaaag 

>ptc-MIR168b (-55.30)   [ptc-miR168b:11-31]

gg    ua     C          U     A ug    ---gg --gauu     -   ag        ac 
  ucuc  auUCG UUGGUGCAGG CGGGA c  auuc     c      ugauu gcc  auggcuaa  a
  ||||  ||||| |||||||||| ||||| |  ||||     |      ||||| |||  ||||||||   
  agag  uaagu aacuacguuc gcccu g  uaag     g      auuaa cgg  ugucgguu  c
--    gc     c          c     a gu    agaaa aaaaau     a   ag        ag 

>ptc-MIR169a (-55.80)   [ptc-miR169a:11-31]

aa ug     C     A   UG           --ua    aucu   uaaauuaaugcauguguagucaaaauuacuacuac 
  g  guaug AGCCA GGA  ACUUGCCGAcu    acug    gua                                   u
  |  ||||| ||||| |||  |||||||||||    ||||    |||                                   a
  c  cguac ucggu ccu  ugaacgguuga    ugau    cau                                   u
-- gu     a     a   gu           uuaa    cgau   caaucaauuaaacaccagugucuagucuaauuaua 

>ptc-MIR169aa (-48.50)   [ptc-miR169aa:10-30]

g     auc                 U   ------  gg      -----      a g 
 uagag   GAGCCAAGAAUGACUUG CGG      ca  cuagca     auugcu c u
 |||||   ||||||||||||||||| |||      ||  ||||||     |||||| | a
 guuuc   cucgguucuugcuggac gcc      gu  gaucgu     uaacga g u
-     -aa                 c   uuauga  aa      augua      - a 

>ptc-MIR169ab (-46.96)   [ptc-miR169ab:10-30]

cu    u g         AC A        cc    ucucaguu  -     aua 
  uguu g UAGCCAAGG  G CUUGCCCA  acca        gg gucca   u
  |||| | |||||||||  | ||||||||  ||||        || |||||   a
  acag c aucgguucc  c gaacgggu  uggu        cc cgggu   u
--    u g         -a -        uu    -uuaccuu  a     cau 

>ptc-MIR169ac (-42.10)   [ptc-miR169ac:10-30]

uc    uu           C    U     c    ugu   ----     c   u ca 
  uugu  gUAGCCAAGGA GACU GCCCA aaua   auc    gugag guu c  a
  ||||  ||||||||||| |||| ||||| ||||   |||    ||||| ||| |   
  gacg  uaucgguuccu cuga cgggu uugu   ugg    uacuc caa g  u
ua    --           -    -     u    --u   uuca     -   c uu 

>ptc-MIR169ad (-39.90)   [ptc-miR169ad:10-30]

gaugu     --         C     G    -c    --     ca   g    g 
     ucggU  AGCCAAGGA GACUU CCCA  acua  ugaga  agu guua a
     |||||  ||||||||| ||||| ||||  ||||  |||||  ||| ||||  
     agucg  ucgguuccu cugaa gggu  uggu  auucu  uca cgau a
----c     ua         -     -    au    ua     --   a    u 

>ptc-MIR169ae (-46.96)   [ptc-miR169ae:10-30]

cu    u g         AC A        cc    ucuuaguu  -     aua 
  uguu g UAGCCAAGG  G CUUGCCCA  acca        gg gucca   u
  |||| | |||||||||  | ||||||||  ||||        || |||||   a
  acag c aucgguucc  c gaacgggu  uggu        cc cgggu   u
--    u g         -a -        uu    -uuaccuu  a     cau 

>ptc-MIR169af (-52.16)   [ptc-miR169af:10-30]

ccu   u g         AC A        cc    ucuuaguu  -          
   guu g UAGCCAAGG  G CUUGCCCA  acca        gg guccaguau 
   ||| | |||||||||  | ||||||||  ||||        || |||||||| a
   cag c aucgguucc  c gaacgggu  uggu        cc cgggucauu 
--a   u g         -a -        uu    -uuaccuu  a          

>ptc-MIR169b (-46.85)   [ptc-miR169b:11-31]

aa  uu    C         UG           -ac        g   ucaucaaua 
  ga  gaug AGCCAAGGA  ACUUGCCGAcg   ucguuuuu cuu         u
  ||  |||| |||||||||  |||||||||||   |||||||| |||          
  cu  uuac ucgguucuu  uggacgguugc   aguagaga gaa         a
--  uu    a         gu           cua        a   uuaauacgc 

>ptc-MIR169c (-43.00)   [ptc-miR169c:11-31]

aaguuu    C         U           -g c   a     g  u  a 
      gaug AGCCAAGGA GACUUGCCGAc  a uca uuuuu cu cc u
      |||| ||||||||| |||||||||||  | ||| ||||| || ||  
      uuac ucgguuccu uuggacgguug  u agu gagaa ga gg a
--ccuu    a         u           ga a   a     -  u  u 

>ptc-MIR169d (-60.79)   [ptc-miR169d:11-31]

gag       C         UG          auuuccuc        c     cg 
   ucgaaug AGCCAAGGA  ACUUGCCGGc        cuaaguag gagcc  g
   ||||||| |||||||||  ||||||||||        |||||||| |||||   
   gguuuau ucgguuccu  ugggcggccg        gguuuauc uucgg  c
--u       a         gu          gcccgcac        -     aa 

>ptc-MIR169e (-52.80)   [ptc-miR169e:11-31]

uauc u    C          GA       Gcaagcuccucacacguauuuuguuucgaguuucauugauggcauugcuagau 
    g ggcg AGCCAAGGAU  CUUGCCG                                                     a
    | |||| ||||||||||  |||||||                                                      
    c cugu ucgguuccug  gaacggc                                                     g
--au u    a          uc       uaguaaaguuggucuguuaccggguuuucaaacuuaaugcuuuaguauauaua 

>ptc-MIR169f (-78.64)   [ptc-miR169f:11-31]

uuau  g u C     AG             aauaa    -      a   cuauagcuaugguauuuuucauccuagguuuggcuauauauauauauauauauagccaguuaauugcuau 
    gu g g AGCCA  GAUGACUUGCCGG     gcua ugauca uag                                                                      a
    || | | |||||  |||||||||||||     |||| |||||| |||                                                                      a
    ca c c ucggu  cuacugaacggcu     ugau acuagu auc                                                                      a
--cu  a u a     cu             --aac    g      -   cuccaccuuguaguuguaaguuacuacacacacagacacacgucuguauauuuuguauuuacacgacucu 

>ptc-MIR169g (-50.80)   [ptc-miR169g:11-31]

gag      gC         UG         -  uuuccuccuagguagcuag 
   uagaau  AGCCAAGGA  ACUUGCCGG ca                   c
   ||||||  |||||||||  ||||||||| ||                   a
   guuuua  ucgguuccu  uggacggcc gu                   a
--u      aa         gu         u  ccguacgguuuaucuuccg 

>ptc-MIR169h (-46.76)   [ptc-miR169h:11-31]

ga       uC        AU           ---------------   a gg     cag  cuu 
  guguaau  AGCCAAGG  GACUUGCCGGc               agc c  gaucu   ag   a
  |||||||  ||||||||  |||||||||||               ||| |  |||||   ||    
  cauguua  ucgguucc  uugaacggccg               ucg g  cuaga   uc   a
--       ca        cg           gccuuuucauuacug   - aa     aga  aau 

>ptc-MIR169i (-52.69)   [ptc-miR169i:11-31]

ucuu   u   -         U    U     cuccauug    a      c    aa     g 
    guu ggU AGCCAAGGA GACU GCCUG        uagg gguuuc gaaa  augca a
    ||| ||| ||||||||| |||| |||||        |||| |||||| ||||  |||||  
    cag uca ucgguuccu cuga cggac        gucc ccaaag cuuu  uaugu c
--gu   u   a         -    -     uuugcuuu    -      -    aa     a 

>ptc-MIR169j (-53.10)   [ptc-miR169j:11-31]

ucu    -uga          U    U     - -ua uu           ugcaaagagaucagaaccaa 
   uguu    UAGCCAAGGA GACU GCCUG c   c  gcaagaguuuc                    a
   ||||    |||||||||| |||| ||||| |   |  |||||||||||                    u
   acag    aucgguuccu cuga cggac g   g  uguucucaaag                    a
---    uccg          -    -     c uua uu           uaauguauauuaagguacgu 

>ptc-MIR169k (-74.10)   [ptc-miR169k:11-31]

ucu     g  -          G      CU u      ccuc      augaacacgagcauuuauguggugcucaaaagaaaaggagagaaugaucccag 
   uguuu gU AGCCAAGGAU ACUUGC  G agccuc    ggauuc                                                     c
   ||||| || |||||||||| ||||||  | ||||||    ||||||                                                     u
   gcaga ca ucgguuccug ugaacg  c uuggag    ccuaag                                                     g
--g     g  a          -      ac c      aaca      aucgauauuuaguggacgaagagcgaugaaguuaccuaacuggaacagcgacg 

>ptc-MIR169l (-50.80)   [ptc-miR169l:11-31]

ucu    -uga          U    U     - -ua  u       aucauuaugcauaaauagaacgaaaua 
   uguu    UAGCCAAGGA GACU GCCUG c   ca acaagag                           u
   ||||    |||||||||| |||| ||||| |   || |||||||                           g
   acag    aucgguuccu cuga cggac g   gu uguucuc                           u
---    ucga          -    -     c uug  u       aaaagugacguaauuaauuaugguaca 

>ptc-MIR169m (-54.50)   [ptc-miR169m:11-31]

ucu    u   -         U    U     -cu   uuca   a      au  a  g  g 
   uguu ggU AGCCAAGGA GACU GCCUG   ccc    agg gguuuc  ga au ca a
   |||| ||| ||||||||| |||| |||||   |||    ||| ||||||  || || ||  
   acag uca ucgguuccu cugg cggac   ggg    ucc ccaaag  cu ua gu c
--g    u   a         -    -     uuu   -uug   -      cu  c  -  a 

>ptc-MIR169n (-48.10)   [ptc-miR169n:11-31]

ag      uuU            A        -a  u  augg      c  c  a 
  agugga   GAGCCAAGGAUG CUUGCCGc  ga gc    uccuug ug ug u
  ||||||   |||||||||||| ||||||||  || ||    |||||| || ||  
  ucgcuu   cuugguuccuac gaacggug  uu ug    gggaac au ac c
--      ccu            -        gg  u  --gg      c  -  a 

>ptc-MIR169o (-45.60)   [ptc-miR169o:11-31]

ccuugc u           A      G    -      -u       g    u 
      g ggAAGCCAAGG UGACUU CCUG agaauu  uaggaag uuuc a
      | ||||||||||| |||||| |||| ||||||  ||||||| |||| u
      c cuuucgguucc acugaa ggac uuuuga  auuuuuc aaag a
-gauau -           a      -    g      uu       g    u 

>ptc-MIR169p (-45.60)   [ptc-miR169p:11-31]

ccuugc u           A      G    -      -u       g    u 
      g ggAAGCCAAGG UGACUU CCUG agaauu  uaggaag uuuc a
      | ||||||||||| |||||| |||| ||||||  ||||||| |||| u
      c cuuucgguucc acugaa ggac uuuuga  auuuuuc aaag a
-gauau -           a      -    g      uu       g    u 

>ptc-MIR169q (-54.90)   [ptc-miR169q:11-31]

ucu    - g           C    U     -uu  ua c   uu   a      -  gg 
   uguu a uUAGCCAAGGA GACU GCCUG   cc  g aau  ggg uuugcc cu  a
   |||| | ||||||||||| |||| |||||   ||  | |||  ||| |||||| ||   
   acag u gaucgguuccu cuga cggac   gg  c uua  ccc ggacgg ga  c
---    u g           -    -     uuu  gc -   cu   a      a  au 

>ptc-MIR169r (-46.80)   [ptc-miR169r:11-31]

gag    -u           AU    U      --u    c  -uaa         aa      
   gguu  ggUAGCCAAGG  GACU GCCUAu   uccu ca    ggcuuuaaa  gcaug 
   ||||  |||||||||||  |||| ||||||   |||| ||    |||||||||  |||| a
   ucga  cuauugguuuc  cuga cggaua   ggga gu    ucgagauuu  uguaa 
---    uc           au    -      cuu    a  uaac         gg      

>ptc-MIR169s (-53.70)   [ptc-miR169s:11-31]

ag    ug  UC          GA         agca  u     ca   cucc        a 
  agug  au  AGCCAAGGAU  CUUGCCGgc    gg aagag  aag    guuuuugg a
  ||||  ||  ||||||||||  |||||||||    || |||||  |||    ||||||||  
  ucau  ua  ucgguuccug  gaacggccg    cc uuuuc  uuc    uaggaacu g
--    gu  ca          uc         ---g  -     aa   --ua        u 

>ptc-MIR169t (-47.80)   [ptc-miR169t:10-30]

c      cc          UG     C   caggcuagcauuugcuagcuacag 
 uagagu  GAGCCAAGAA  ACUUG CGG                        g
 ||||||  ||||||||||  ||||| |||                         
 guuuca  cucgguucuu  uggac gcc                        g
-      -u          gu     c   uuacagugaaaucguauguagaac 

>ptc-MIR169u (-54.60)   [ptc-miR169u:11-31]

gag       -       -   C    U      --u    -   ug   uc     ---a  aau 
   gguuggg UAGCCAA GGA GACU GCCUAu   uccu cca  ggg  cugaa    ag   g
   ||||||| ||||||| ||| |||| ||||||   |||| |||  |||  |||||    ||   a
   ucaaucc aucgguu ccu cuga cggaua   ggga ggu  cuc  gacuu    uc   a
---       u       u   -    -      cuu    u   ua   ga     gcug  aua 

>ptc-MIR169v (-44.10)   [ptc-miR169v:10-30]

cguguuug         G      U     -cu   uu   a       ucaa    au 
        gUAGCCAAG AUGACU GCCCA   cca  gaa gaguuuu    gcau  g
        ||||||||| |||||| |||||   |||  ||| |||||||    ||||   
        uaucgguuc uacuga cgggu   ggu  cuu uucaaga    ugug  g
--cagucg         -      -     cuu   uu   -       ----    au 

>ptc-MIR169w (-45.40)   [ptc-miR169w:10-30]

cguguuug          A     U     -cu  au  a   a      -aa  a 
        gUAGCCAAGG UGACU GCCCA   cu  gg aag guucuc   gc c
        |||||||||| ||||| |||||   ||  || ||| ||||||   || a
        uaucgguucc acuga cgggu   gg  uc uuc caggag   cg c
--cagucg          -     -     cuc  cu  a   c      aga  g 

>ptc-MIR169x (-39.40)   [ptc-miR169x:11-31]

ug     uuc        G    C     CGuuagcccuugaaagauguuucaaauuuag 
  cuguu   UAGCCAAG AUGA UUGCU                               g
  |||||   |||||||| |||| |||||                                
  gacag   aucgguuc uacu aacgg                               c
--     uaa        -    -     acuucggucuuuuuccaagacucguauacgu 

>ptc-MIR169y (-50.59)   [ptc-miR169y:11-31]

ucu    u   -     --UG     A       -cuu  aa       ug      cgagaua 
   uguu agU AGCCA    GAUGA UUGCCUG    cc  aaugagg  ucaagc       a
   |||| ||| |||||    ||||| |||||||    ||  |||||||  ||||||        
   acag uca ucggu    cuacu gacggac    gg  uuacucc  aguuug       a
--g    u   a     ucga     -       ccuu  gg       cu      aacauac 

>ptc-MIR169z (-52.10)   [ptc-miR169z:11-31]

uagua     C         UG         --c   ------------    agca   -       
     gaaug AGCCAAGAA  AUUUGCCGG   gcc            ggcc    cuu guugca 
     ||||| |||||||||  |||||||||   |||            ||||    ||| ||||| a
     uuuac ucgguucuu  ugaacggcc   cgg            ucgg    gaa caacga 
--agg     a         gu         cca   uuuuuguaaacu    gaac   u       

>ptc-MIR171a (-49.80)   [ptc-miR171a:75-95]

uca   aaa   g                       a    a     ccaa 
   gag   acg gauauugguacgguucaaucaga agua ugcuc    a
   |||   ||| ||||||||||||||||||||||| |||| |||||    a
   cuc   uGC CUAUAACCGUGCCGAGUUaguuu uuau augag    g
-ua   aca   A                       g    c     auau 

>ptc-MIR171b (-53.50)   [ptc-miR171b:74-94]

uu       a  a        ug                  au    c  a 
  auauaua cg gauauugg  cgguucaaucagauagua  gcuc au a
  ||||||| || ||||||||  ||||||||||||||||||  |||| ||  
  uguauau GC CUAUAACC  GCCGAGUUaguuuguuau  cgag ua g
gu       -  A        GU                  cu    a  c 

>ptc-MIR171c (-42.90)   [ptc-miR171c:75-95]

aaa      c          a         c  a  -  -ga      c  ga 
   agaaag gauguuggug gguucaauc ga ga cg   uuuaca gu  a
   |||||| |||||||||| ||||||||| || || ||   |||||| ||  a
   ucuuuc CUAUAACCGC CCGAGUUAG cu cu gc   aaaugu ua  g
-ac      a          G         A  -  a  aua      -  au 

>ptc-MIR171d (-38.10)   [ptc-miR171d:71-91]

aaaa     c          a         c  a  - a     ac  gag 
    gaaag gauguuggug gguucaauc ga ga c gauuu  ac   u
    ||||| |||||||||| ||||||||| || || | |||||  ||    
    uuuuc CUAUAACCGC CCGAGUUAG cu cu g cuaaa  ug   g
-gac     a          G         A  -  a c     -a  aaa 

>ptc-MIR171e (-38.30)   [ptc-miR171e:65-85]

gugga   u           ga         a  c    c     a 
     aau ugauguuggca  gcucaauca au aaag acuca u
     ||| |||||||||||  ||||||||| || |||| ||||| g
     uua gCUAUAACCGU  CGAGUUAGU ua uuuc ugggu g
-uaaa   c           GC         c  c    u     u 

>ptc-MIR171f (-59.50)   [ptc-miR171f:101-121]

gu u     c         c       c       --aaa   -      -          --aa a 
  g cauug gauguuggc cgguuca ucagaga     gac accauu uuuuuucaag    g u
  | ||||| ||||||||| ||||||| |||||||     ||| |||||| ||||||||||    | c
  c gugau CUAUAACCG GCCGAGU AGUcucu     cug ugguaa aagaaaguuc    c a
cu -     u         U       U       gcugg   g      u          gaaa u 

>ptc-MIR171g (-44.50)   [ptc-miR171g:71-91]

-ga     ggg        g            u  c   ucu     auu 
   aagug   gauguugg auggcucaauca gu aaa   cccaa   a
   |||||   |||||||| |||||||||||| || |||   |||||   u
   uucac   CUAUAACC UGCCGAGUUAGU ua uuu   ggguu   g
uuc     --a        G            c  a   ucu     gua 

>ptc-MIR171h (-46.60)   [ptc-miR171h:71-91]

-gaa    ggg        g            u  c    cu     a ua 
    agug   gauguugg auggcucaauca au aaau  cccaa c  u
    ||||   |||||||| |||||||||||| || ||||  ||||| |   
    ucac   CUAUAACC UGCCGAGUUAGU ua uuug  ggguu g  g
ucaa    --a        G            c  a    cu     - ua 

>ptc-MIR171i (-43.29)   [ptc-miR171i:100-120]

     a  au         c       c       --    c uc       agugucuuucuuc 
gagug cu  gauauuggc ugguuca ucagauc  acga u  agagcaa             u
||||| ||  ||||||||| ||||||| |||||||  |||| |  |||||||              
cucau ga  CUAUAACCG GCCGAGU AGUuuag  ugcu g  uuuuguu             u
     -  cu         U       U       uu    u ua       cuucuucuucuuc 

>ptc-MIR171j (-26.90)   [ptc-miR171j:67-87]

-cua  uca  a       a a     -   uc  a    cc    uga 
    ac   ag uauuggc c guuca ucc  ac gugg  uuga   a
    ||   || ||||||| | ||||| |||  || ||||  ||||    
    ug   UC AUAACCG G CGAGU AGG  ug uauc  aacu   u
accg  -ug  -       C C     U   -u  g    ua    uag 

>ptc-MIR172a (-54.30)   [ptc-miR172a:100-120]

uuguuu  a                     acauucaaauagauguaccgaagcuauacagcua 
      gc ggugcagcaucaucaagauuc                                  u
      || |||||||||||||||||||||                                   
      cg cUACGUCGUAGUAGUUCUAAG                                  g
-aauac  a                     Aguggauguuacuaauauguaacgaucgaucgau 

>ptc-MIR172b (-55.90)   [ptc-miR172b:111-131]

uugu    g    g                a   --g    -u  -ac   c     uguua    u    uc 
    uugc ggug agcaucaucaagauuc cau   caaa  gc   ggc gguga     agag uaaa  u
    |||| |||| |||||||||||||||| |||   ||||  ||   ||| |||||     |||| ||||   
    aacg cUAC UCGUAGUAGUUCUAAG gug   guuu  ug   ccg cuacu     ucuu guuu  u
-aau    g    G                A   aag    cu  aaa   u     ---ug    u    cu 

>ptc-MIR172c (-54.50)   [ptc-miR172c:99-119]

uuguuu  a                   --    a     ac   u     gca   ag   g  a 
      gc ggugcagcaucaucaagau  ucac uucaa  aga guacg   gcu  cua cu g
      || |||||||||||||||||||  |||| |||||  ||| |||||   |||  ||| ||  
      cg cUACGUCGUAGUAGUUCUA  Agug aaguu  ucu uaugu   cga  gau ga a
-aauac  a                   AG    g     --   u     -aa   ca   a  u 

>ptc-MIR172d (-97.90)   [ptc-miR172d:153-173]

------------------------------------------------------gcauuggcggaugcggcaucaucaagauuca                agu   a        a 
                                                                                     caagcuuuaaggcuug   gag gggguggc u
                                                                                     ||||||||||||||||   ||| |||||||| a
                                                                                     guucggaauuucgaac   uuc cuccacug c
auaaacggcUACGUCGUAGUAGUUCUAAGGguauuuuuuccugggaaaccugauuuccuccacuggcauacgguggggagaguga                gau   -        g 

>ptc-MIR172e (-59.90)   [ptc-miR172e:104-124]

a    g            g           a  ---aacu      -----c      ug   u   aca 
 uauu gccgaugcggca caucaagauuc ca       uuaagg      uugagu  ggg ggu   c
 |||| |||||||||||| ||||||||||| ||       ||||||      ||||||  ||| |||    
 auaa cggcUACGUCGU GUAGUUCUAAG gu       aauucc      agcuca  ucc cca   g
-    a            A           G  agucuuu      uuggaa      uu   u   cug 

>ptc-MIR172f (-56.80)   [ptc-miR172f:132-152]

uugu    g     u      c        a   --g    -u  -a    c      --auau uu    ----         a 
    uugc ggugc gcauca caagauuc cau   caaa  gc  uggc gaugau      g  agaa    auuuuuuuu u
    |||| ||||| |||||| |||||||| |||   ||||  ||  |||| ||||||      |  ||||    |||||||||  
    aacg cUACG CGUAGU GUUCUAAG gug   guuu  ug  accg cuacua      c  ucuu    uagaaaaaa a
-aau    g     U      A        A   aag    cu  aa    u      gucuuu uu    ucua         u 

>ptc-MIR172g (-60.00)   [ptc-miR172g:114-134]

cugu     ua  g                a   gc    uu       gugug   --   u  --u  u    uu 
    uugcc  ug agcaucaucaagauuc caa  uuua  agggcua     ugg  uga ga   gg ggcu  u
    |||||  || |||||||||||||||| |||  ||||  |||||||     |||  ||| ||   || ||||   
    aacgg  AC UCGUAGUAGUUCUAAG guu  aagu  ucccgau     acc  acu uu   cc cugg  g
-aau     cG  G                G   --    -u       ----a   ua   u  uuu  -    ug 

>ptc-MIR172h (-56.20)   [ptc-miR172h:114-134]

cugu      a  g    c           a   ac    uuag     auaa  ggu     u  u    uu 
    uugccg ug agca caucaagauuc caa  uuua    ggcua    gu   gauga gg ggcu  u
    |||||| || |||| ||||||||||| |||  ||||    |||||    ||   ||||| || ||||   
    aacggc AC UCGU GUAGUUCUAAG guu  aagu    ccgau    ca   uugcu cc cugg  g
-aau      G  G    A           G   --    -uua     aacc  acu     u  -    ug 

>ptc-MIR172i (-40.90)   [ptc-miR172i:97-117]

---a    gugaag      -a    c     g  ---g     g   -ug     g ug    aaug 
    ugug      gcagca  gucg ggguu uu    uuggc aaa   guucu u  guug    g
    ||||      ||||||  |||| ||||| ||    ||||| |||   ||||| |  ||||     
    acac      CGUCGU  UAGU CCUAA Ag    agcug uuu   caagg a  cgau    a
cgag    ----AA      AG    -     G  aaga     g   uga     a gu    gaga 

>ptc-MIR319a (-76.90)   [ptc-miR319a:160-179]

uaau  cu   a     uu          cuc     u   ag            a -  g   ac       uc  aa     aguuaaagga 
    ag  aag gagcu  cuucagucca   auggg ggu  uaggauuuaauu g cu ccg  ucauuca  ca  uacug          c
    ||  ||| |||||  ||||||||||   ||||| |||  |||||||||||| | || |||  |||||||  ||  |||||          a
    uc  uuC CUCGA  GAAGUCAGGU   ugucc ucg  auccuaaguuaa c ga ggc  aguaagu  gu  augac          a
-uuu  cu   C     GG          Uca     u   -a            a a  g   gu       ga  aa     ccauuagagg 

>ptc-MIR319b (-65.40)   [ptc-miR319b:157-176]

u     au   a                 c u    au   aauau         a   -a   ac        c  aa     a  u  gag 
 aauag  aag gagcuuuuuucggucca u auag  agu     gauuuaauu guu  ccg  ucauucau ca  uacug gu au   c
 |||||  ||| ||||||||||||||||| | ||||  |||     ||||||||| |||  |||  |||||||| ||  ||||| || ||    
 uuguc  uuC CUCGAGGGAAGUCAGGU a uauc  uca     cuaaauuaa cag  ggc  agugagua gu  augac ca ua   u
-     au   C                 U c    cu   -aauu         a   ag   gu        a  aa     c  u  gaa 

>ptc-MIR319c (-82.80)   [ptc-miR319c:168-187]

a      u   a     uu          cu      cg  c       uu     -ag  g   ac        u  aa      agaaauuaaggg     u 
 augguu aag gagcu  cuucagucca  caugga  gg gaagggu  ggauu   cu ccg  ucauucau ca  cacagu            agcag a
 |||||| ||| |||||  ||||||||||  ||||||  || |||||||  |||||   || |||  |||||||| ||  ||||||            ||||| u
 ugcuaa uuC CUCGA  GAAGUCAGGU  gugucu  uc uuuccua  uuuaa   ga ggc  aguaagug gu  guguua            ucguc g
-      u   C     GG          Uc      cu  u       -c     aua  g   gu        u  aa      ------------     g 

>ptc-MIR319d (-84.50)   [ptc-miR319d:165-184]

a ug   u  ca                 cu      cg  c       uu       -  g   ac        u  aa        aca  ga  g 
 a  guu aa  gagcuuccuucagucca  caugga  gg gaagggu  ggauuag cu ccg  ucauucau ca  cacaguag   ag  gu g
 |  ||| ||  |||||||||||||||||  ||||||  || |||||||  ||||||| || |||  |||||||| ||  ||||||||   ||  ||  
 u  uaa uu  CUCGAGGGAAGUCAGGU  gugucu  uc uuuccua  uuuaauu ga ggc  aguaagug gu  guguuauc   uc  cg c
- gu   u  CC                 Uc      cu  u       -c       a  g   gc        u  aa        --g  gg  a 

>ptc-MIR319e (-92.10)   [ptc-miR319e:164-183]

  ag     g   u                 ac  a    u   -aa    cua  ---   g    cu      uuua   aau       --a   g 
gg  gggcu agg gcuccuuuuaguccaau  gg gggc gag   gcgg   ga   gcu ccau  caugca    ggc   gcuuaac   uuu a
||  ||||| ||| |||||||||||||||||  || |||| |||   ||||   ||   ||| ||||  ||||||    |||   |||||||   ||| c
cc  uuugg UCC CGAGGGAAGUCAGGUUa  cc cucg uuc   cgcc   cu   cga ggug  guacgu    ccg   cgaauug   aga g
  au     -   U                 -c  g    u   gua    uuc  caa   g    ug      -uca   guu       gag   a 

>ptc-MIR319f (-91.10)   [ptc-miR319f:174-193]

ua    -u     a             c   cu      u      aa    ---uu      g  g   ac        u   g   c     aaaa        g 
  augg  gggag gagcuuccuucag cca  caugga aggaga  gggg     gaauua cu ccg  ucauucau caa cac aguag    aggggaau g
  ||||  ||||| ||||||||||||| |||  |||||| ||||||  ||||     |||||| || |||  |||||||| ||| ||| |||||    ||||||||  
  uauc  ccuUC CUCGAGGGAAGUC GGU  gugucu uuuucu  cccc     uuuaau ga ggc  aguaagug guu gug ucauc    uuuucuua a
--    uu     -             A   Uc      -      --    uacau      a  g   gu        u   a   -     ---g        u 

>ptc-MIR319g (-80.50)   [ptc-miR319g:176-195]

uaaucgu     a             c   cu  ug  -u    caaa     u   --cuag  g   ac        u   g   u     a    a     a 
       gggag gagcuucuuucag cca  cg  ga  agga    ggggu gaa      cu ccg  ucauucau caa cac aguag aaaa aggcg a
       ||||| ||||||||||||| |||  ||  ||  ||||    ||||| |||      || |||  |||||||| ||| ||| ||||| |||| ||||| c
       ccuUC CUCGAGGGAAGUC GGU  gu  cu  uccu    uccua cuu      ga ggc  aguaagug guu gug ucauc uuuu uuugu g
-ucucuu     -             A   Uc  gu  uu    ---c     c   uuaaua  g   gu        u   a   -     g    c     g 

>ptc-MIR319h (-83.10)   [ptc-miR319h:165-184]

uugua  ---g    aagu                 aa  a    u   -aa    cua  ---   g    cu         a   aau      ca   gg 
     gg    gcua    gcuccuuuuaguccaau  gg gggc gag   gcgg   ga   gcu ccau  caugcauuu ggc   gcuuaa  uuu  c
     ||    ||||    |||||||||||||||||  || |||| |||   ||||   ||   ||| ||||  ||||||||| |||   ||||||  |||   
     cc    uggU    CGAGGGAAGUCAGGUUa  cc cuug uuc   cgcc   cu   cga ggug  guacgugga ccg   cgaauu  gag  a
---ca  auuu    -CCU                 -c  g    u   gua    uuc  caa   g    ug         -   guu      ug   aa 

>ptc-MIR319i (-33.00)   [ptc-miR319i:61-80]

gu c    a   ag       c     u   -----     u   ag 
  g agaa ugg  guuccuu cagcc caa     gcauc uua  a
  | |||| |||  ||||||| ||||| |||     ||||| |||   
  c ucuu aCC  CGAGGGA GUCGG GUU     uguag ggu  u
-u u    a   CU       A     -   uuauc     c   gg 

>ptc-MIR390a (-49.31)   [ptc-miR390a:11-31]

ag       uA         G            ga c     ---aaagucua    u   u 
  aaucugu  AGCUCAGGA GGAUAGCGCCau  g augac           uguu gag u
  |||||||  ||||||||| ||||||||||||  | |||||           |||| ||| a
  uugggua  uugaguccu ucuaucgcggug  c uacug           acaa cuc a
--       uc         a            -a -     accuaacuaaa    -   u 

>ptc-MIR390b (-43.10)   [ptc-miR390b:11-31]

agaaucuguu          G          -  a    uaa   ug    - uu 
          AAGCUCAGGA GGAUAGCGCC cu agga   uca  ggcu c  u
          |||||||||| |||||||||| || ||||   |||  |||| |  u
          uuugaguccu ccuaucgcgg ga ucuu   agu  uugg g  u
--uucguuac          a          u  c    ---   uu    u ua 

>ptc-MIR390c (-60.20)   [ptc-miR390c:11-31]

ag       uA         G          auga         a  -     guu  a    u 
  gaucugu  AGCUCAGGA GGAUAGCGCC    gcugaugau ag uugau   ug uggg u
  |||||||  ||||||||| ||||||||||    ||||||||| || |||||   || |||| a
  uuggaua  uugaguccu ucuaucgcgg    ugauuacug uc aacua   ac acuc a
--       uc         a          ----         a  u     -au  a    u 

>ptc-MIR390d (-44.70)   [ptc-miR390d:11-31]

ag    u  u          G          -  aag    ac  ug    cuuu 
  aauc gu AAGCUCAGGA GGAUAGCGCC cu   gaua  ca  ggcu    u
  |||| || |||||||||| |||||||||| ||   ||||  ||  ||||     
  uugg ca uuugaguccu ccuaucgcgg ga   cuau  gu  uugg    u
--    u  u          a          u  ---    ca  uu    uuua 

>ptc-MIR393a (-44.60)   [ptc-miR393a:11-31]

ag      c            C    U     c    guc  u 
  aggagg aUCCAAAGGGAU GCAU GAUCc aagu   ug c
  |||||| |||||||||||| |||| ||||| ||||   || c
  uccucc uagguuucccua cgua cuagg uuua   ac c
--      u            u    -     u    -au  c 

>ptc-MIR393b (-44.72)   [ptc-miR393b:11-31]

ag      c            C    U     c    guccc 
  aggagg aUCCAAAGGGAU GCAU GAUCc gagu     u
  |||||| |||||||||||| |||| ||||| ||||     g
  uccucc uagguuucccua cgua cuagg uuua     g
--      u            u    -     u    auacc 

>ptc-MIR393c (-47.80)   [ptc-miR393c:11-31]

gcu    u     A            U          cucuc  ugu     u   a 
   ggag guUCC AAGGGAUCGCAU GAUCuaauga     ga   cuaaa cau u
   |||| ||||| |||||||||||| ||||||||||     ||   ||||| |||  
   ccuu uaagg uucccuagcgua cuagguugcu     uu   gauuu gua u
--a    u     a            -          -----  uuu     -   a 

>ptc-MIR393d (-50.50)   [ptc-miR393d:11-31]

gu     u     A            U          cuuu    gucu    ga 
  uggag guUCC AAGGGAUCGCAU GAUCuaauga    ugau    auau  u
  ||||| ||||| |||||||||||| ||||||||||    ||||    ||||  g
  accuu uaagg uucccuagcgua cuagguuacu    acug    ugua  u
--     u     a            -          --uu    -auu    au 

>ptc-MIR394a (-80.30)   [ptc-miR394a-5p:38-57] [ptc-miR394a-3p:117-136]

     u               uuu  u         -u      U C            -ucu      a uac 
ucaug ggguuuugcaaaggg   cu acagaguuu  UUGGCA U UGUCCACCUCCa    guagaa c   a
||||| |||||||||||||||   || |||||||||  |||||| | ||||||||||||    |||||| |    
agugc cccaaAAUGUUUCUC   GG UGUCucgag  aaccgu a acggguggaggu    caucuu g   a
     u               UCU  U         uc      c u            cuuu      - uug 

>ptc-MIR394b (-63.74)   [ptc-miR394b-5p:38-57] [ptc-miR394b-3p:117-136]

     u  a   a        uuu  u         -a      U C           uaucuuu   a  ua 
ucaug gg uuu gcaaaggg   cu acagaguuu  UUGGCA U UGUCCACCUCC       aga au  g
||||| || ||| ||||||||   || |||||||||  |||||| | |||||||||||       ||| ||   
agugc cc aaA UGUUUCUC   GG UGUCucgag  aaccgu a acggguggagg       ucu ua  a
     u  c   A        UCU  U         cc      c u           uauacuu   c  ua 

>ptc-MIR395a (-80.30)   [ptc-miR395a:198-218]

  u    cu          u    u        cccgu   aagc          au   -     gcu   aaga       -gugu      --      -    aa       au 
gg cacc  gaguuccucc agcu cuucagua     gga    uaaugcuaca  uau cuuga   ggu    cuggcag     cagaug  uggaug uguu  agguaau  u
|| ||||  |||||||||| |||| ||||||||     |||    ||||||||||  ||| |||||   |||    |||||||     ||||||  |||||| ||||  |||||||  a
uc gugg  CUCAAGGAGG UUGG GAAGUCgu     ccu    auuauggugu  aua gaacu   uua    gauuguc     guuuau  acuuac gcgg  uuuauua  u
  -    au          U    -        uuagu   ---c          --   u     aau   -gga       aucuu      ga      c    ca       gu 

>ptc-MIR395b (-48.89)   [ptc-miR395b:69-89]

g  u c  ua         ug         c     cccuucag  - g 
 ug c cc  gaguucccu  agcacuuca uggga        ac c a
 || | ||  |||||||||  ||||||||| |||||        || |  
 ac g gg  CUCAAGGGG  UUGUGAAGU acccu        ug g a
-  u u  uc         GU         C     uucuauua  a a 

>ptc-MIR395c (-43.10)   [ptc-miR395c:72-92]

g  u c  ua         ug         u      ucuucgauuaaau 
 ug c cc  gaguuccuc  agcacuuca ugggaa             g
 || | ||  |||||||||  ||||||||| ||||||              
 ac g gg  CUCAAGGGG  UUGUGAAGU auccuu             a
-  u u  uc         GU         C      acuauuaugagaa 

>ptc-MIR395d (-43.54)   [ptc-miR395d:72-92]

g  u c  ua         ug         c       --uuccga  aaa 
 ug c cc  gaguuccuc  agcacuuca ugggaau        uc   u
 || | ||  |||||||||  ||||||||| |||||||        ||    
 ac g gg  CUCAAGGGG  UUGUGAAGU auccuua        ag   g
-  u u  uc         GU         C       cuauuaug  aaa 

>ptc-MIR395e (-59.06)   [ptc-miR395e:84-104]

cu   c             ug c       c     ---cuauaa          cg 
  guc cccggaguuuccc  a cacuuca ugggg         uucuacucuu  u
  ||| |||||||||||||  | ||||||| |||||         ||||||||||  g
  cgg ggguCUCAAGGGG  U GUGAAGU acucc         gagaugggaa  u
-a   u             GU U       C     uucccaacg          uu 

>ptc-MIR395f (-58.06)   [ptc-miR395f:84-104]

cu   c             ug c       c     ---cuauaa      u   cgu 
  guc cccggaguuuccc  a cacuuca ugggg         uucuac ccu   g
  ||| |||||||||||||  | ||||||| |||||         |||||| |||    
  cgg ggguCUCAAGGGG  U GUGAAGU acucc         gagaug gga   u
-a   a             GU U       C     uucccaacg      -   auu 

>ptc-MIR395g (-43.30)   [ptc-miR395g:73-93]

g  u c  ua         ug         u      ---------    c  uc 
 ug c cc  gaguuccuc  agcacuuca ugggga         ucuu ca  g
 || | ||  |||||||||  ||||||||| ||||||         |||| ||   
 ac g gg  CUCAAGGGG  UUGUGAAGU auccuu         agaa gu  a
-  u u  uc         GU         C      acuauuaug    a  cc 

>ptc-MIR395h (-43.30)   [ptc-miR395h:73-93]

g  u c  ua         ug         u      ---------    c  uc 
 ug c cc  gaguuccuc  agcacuuca ugggga         ucuu ca  g
 || | ||  |||||||||  ||||||||| ||||||         |||| ||   
 ac g gg  CUCAAGGGG  UUGUGAAGU auccuu         agaa gu  a
-  u u  uc         GU         C      acuauuaug    a  cc 

>ptc-MIR395i (-43.30)   [ptc-miR395i:73-93]

g  u c  ua         ug         a      ---------    c  uc 
 ug c cc  gaguuccuc  agcacuuca ugggga         ucuu ca  g
 || | ||  |||||||||  ||||||||| ||||||         |||| ||   
 ac g gg  CUCAAGGGG  UUGUGAAGU auccuu         agaa gu  a
-  u u  uc         GU         C      acuauuaug    a  cc 

>ptc-MIR395j (-43.30)   [ptc-miR395j:73-93]

g  u c  ua         ug         a      ---------    c  uc 
 ug c cc  gaguuccuc  agcacuuca ugggga         ucuu ca  g
 || | ||  |||||||||  ||||||||| ||||||         |||| ||   
 ac g gg  CUCAAGGGG  UUGUGAAGU auccuu         agaa gu  a
-  u u  uc         GU         C      acuauuaug    a  cc 

>ptc-MIR396a (-47.80)   [ptc-miR396a:11-31]

cuug    uc            C          ccu  uu      ugu     -    ---     
    guau  UUCCACAGCUUU UUGAACUGca   au  gaauau   uguug augu   ugcc 
    ||||  |||||||||||| ||||||||||   ||  ||||||   ||||| ||||   ||| g
    caua  agggugucgaaa aacuuggcgu   ug  uuuaug   acagu uaca   acgu 
--aa    ga            u          ---  uu      -uu     a    ugu     

>ptc-MIR396b (-51.60)   [ptc-miR396b:11-31]

cu      uc            C          c -uauua  --u       g    u  ug  c a 
  uuguau  UUCCACAGCUUU UUGAACUGca c      ga   uaauguu augu gu  ug g u
  ||||||  |||||||||||| |||||||||| |      ||   ||||||| |||| ||  || | a
  aacaua  agggugucgaaa aacuuggcgu g      cu   guuacag uaua ca  ac c u
--      ga            u          c uuuuua  uau       -    c  gu  - g 

>ptc-MIR396c (-44.62)   [ptc-miR396c:11-31]

ugc      u      A               -----------------    ---a   u 
   cauguu UUCCAC GCUUUCUUGAACUUc                 cuag    gcc a
   |||||| |||||| |||||||||||||||                 ||||    |||  
   guacga aaggug cgaaagaacuugaag                 gauc    ugg g
--a      u      c               aauucaauauacauauc    gucg   a 

>ptc-MIR396d (-63.20)   [ptc-miR396d:11-31]

ggu    c        A          A     ---u   cau   uaacuu         ug   gu u        a 
   caug uuUUCCAC GCUUUCUUGA CUUcc    ugc   gcu      gugugugug  ugu  g guguguag u
   |||| |||||||| |||||||||| |||||    |||   |||      |||||||||  |||  | ||||||||  
   guac agagggug cgaaagaacu gaagg    acg   cga      uacacauau  aua  u uauauauc c
--g    a        c          c     uacc   -au   ucgauu         ug   ug c        a 

>ptc-MIR396e (-58.40)   [ptc-miR396e:11-31]

ggu    c                   A     -uu  cuugcuuaaucuguguauauauagaucacuacaug 
   caug uuUUCCACAGCUUUCUUGA CUUcu   gc                                   u
   |||| ||||||||||||||||||| |||||   ||                                    
   guac agagggugucgaaagaacu gaagg   cg                                   a
--g    a                   c     uac  cgauauguauguauauaaauauauauauccucgac 

>ptc-MIR396f (-42.43)   [ptc-miR396f:11-31]

cuu         C  C                auauauuau    gg      a  agac      a 
   ggugauuUU CA GGCUUUCUUGAACUGu         caau  cuuuuu ca    uggaag u
   ||||||||| || ||||||||||||||||         ||||  |||||| ||    ||||||  
   uuauuaaaa gu ccgaaagaacuugaca         guua  gaagag gu    accuuu g
--u         a  c                -aaaacacu    -a      -  ----      g 

>ptc-MIR396g (-66.20)   [ptc-miR396g:11-31]

uug    c                   A   g c   c       a   gaguaaagggcuaggcuuucuuuucuauuccuuuc 
   caug uuUUCCACGGCUUUCUUGA CUU g acu aagagac uga                                   g
   |||| ||||||||||||||||||| ||| | ||| ||||||| |||                                   u
   guau aaagggugccgaaagaacu gaa c uga uucucug acu                                   u
--a    a                   c   a a   u       -   auacauaccuaagaaacuuguccuuuuaaaguuuc 

>ptc-MIR397a (-43.50)   [ptc-miR397a:11-31]

ug     c   C                A      -ccu    uuugugcuauuaaacug 
  gagaa caU AUUGAGUGCAGCGUUG UGaaau    ccau                 u
  ||||| ||| |||||||||||||||| ||||||    ||||                 u
  cuuuu gua uaacuuacgucgcgac acuuua    ggua                 a
--     u   c                c      cuac    cgggguauuucccaacc 

>ptc-MIR397b (-40.30)   [ptc-miR397b:11-31]

uaauuau   CCA               A      ucucuuguuagcuuacuuagcu 
       aca   UUGAGUGCAGCGUUG UGaaau                      a
       |||   ||||||||||||||| ||||||                       
       ugu   aacuuacgucgcgac acuuua                      u
--cuuuu   acc               c      cuaaggugcgguagcacucuuu 

>ptc-MIR397c (-20.90)   [ptc-miR397c:11-31]

caaguuua    -AU  -           GAU   a 
        guUC   UG AGUGGAGCUUU   Gac a
        ||||   || |||||||||||   ||| u
        caag   au ucaucucgaaa   uug u
--guauaa    cuu  g           auu   u 

>ptc-MIR398a (-55.80)   [ptc-miR398a:80-100]

guaca         a      cca            -----g   g     c    u 
     ccccagagg guggcu   gagaacacaggg      guu guuuu uagc g
     ||||||||| ||||||   ||||||||||||      ||| ||||| |||| u
     gggguUUCC CACUGG   CUCUUGUGUcuc      cag uagaa aucg a
-ccac         C      --A            acgaaa   g     c    a 

>ptc-MIR398b (-39.00)   [ptc-miR398b:56-76]

a    u   a    a       u  gu      u  cg      
 gggu ccg cagg gcggccu gg  cacaug gg  gcauc 
 |||| ||| |||| ||||||| ||  |||||| ||  |||| c
 uucg ggc GUCC CGCUGGA UC  GUGUac uc  uguaa 
c    -   c    C       C  UU      u  -a      

>ptc-MIR398c (-44.30)   [ptc-miR398c:68-88]

aggau   ua    a         aau       gg   g ------    u 
     ucc  cagg gcgaccuga   cacaugu  gcu c      accc c
     |||  |||| |||||||||   |||||||  ||| |      ||||  
     ggg  GUCC CGCUGGACU   GUGUaca  cga g      uggg c
-uuuc   cc    C         CUU       -a   - uucuau    u 

>ptc-MIR399a (-52.10)   [ptc-miR399a:91-111]

gcaau    a c      uua             u   -c   caacg   gca     uc 
     aauu c gggcaa   cuccuuuggcagc ggc  acu     gcg   gguga  a
     |||| | ||||||   ||||||||||||| |||  |||     |||   |||||   
     uuaa G CCCGUU   GAGGAAACCGUcg ucg  uga     cgu   ccacu  a
-cuac    c C      -UA             c   aa   acaaa   -aa     ua 

>ptc-MIR399b (-45.50)   [ptc-miR399b:97-117]

ggugc      auuaca       c    a        ca   acuaagacacgcaauaucuaac 
     aguugc      gggcaag uucc uuggcaug  gcc                      a
     ||||||      ||||||| |||| ||||||||  |||                       
     uuaacG      CCCGUUU GAGG AACCGUac  cgg                      c
-cuuc      -----G       A    A        cg   cgugagauguccuuacguaguu 

>ptc-MIR399c (-45.50)   [ptc-miR399c:97-117]

ggugc      auuaca       c    a        ca   acuaagacacgcaauaucuaac 
     aguugc      gggcaag uucc uuggcaug  gcc                      a
     ||||||      ||||||| |||| ||||||||  |||                       
     uuaacG      CCCGUUU GAGG AACCGUac  cgg                      c
-cuuc      -----G       A    A        cg   cgugagauguccuuacguaguu 

>ptc-MIR399d (-44.06)   [ptc-miR399d:85-105]

--   --   auuacu      u      g       cu  ug -   aua    acuagc 
  gga  ugc      gggcaa ucuucu uuggcag  gg  a cuc   cugc      u
  |||  |||      |||||| |||||| |||||||  ||  | |||   ||||      g
  ccu  acG      CCCGUU AGAAGA AACCGUc  uc  u gag   gacg      a
uu   ua   -----C      U      -       ac  gu u   aac    aauuag 

>ptc-MIR399e (-46.06)   [ptc-miR399e:85-105]

g    c   a u      u      g        u  ug -   aua    acuagc 
 gaug auu c gggcaa ucuucu uuggcagu gg  a cuc   cugc      u
 |||| ||| | |||||| |||||| |||||||| ||  | |||   ||||      g
 uuac uaa G CCCGUU AGAAGA AACCGUca uc  u gag   gacg      a
-    u   c C      U      -        c  gu u   aac    aauuag 

>ptc-MIR399f (-41.60)   [ptc-miR399f:72-92]

uaaa    aa      uuu  c             -     cauggaaaua 
    gaau  cagggc   au cuccuuuggcaaa cagaa          a
    ||||  ||||||   || ||||||||||||| |||||          a
    cuua  GUCCCG   UA GAGGAAACCGUuu gucuu          u
-uag    cc      --U  A             u     uauacguccg 

>ptc-MIR399g (-40.10)   [ptc-miR399g:65-85]

uga     aa u u                  -a  uaua   c  u 
   ugaau  c g gcaauucuccuuuggcag  cg    ugg gu c
   |||||  | | ||||||||||||||||||  ||    ||| ||  
   acuua  G C CGUUAAGAGGAAACCGUc  gu    acc ca g
-ca     cc U C                  ag  uuca   a  g 

>ptc-MIR399h (-46.70)   [ptc-miR399h:103-123]

    ca  ug     cac       cc      gacaguacuaauggugccuauagcuucaagcug 
aaac  gu  caggg   cucucuu  uuggca                                 a
||||  ||  |||||   |||||||  ||||||                                 g
uuug  ca  GUCCC   GAGAGGA  AACCGU                                 a
    -c  gu     UUU       --      ucggauauaacccuaguucuaagagcguauggg 

>ptc-MIR399i (-47.90)   [ptc-miR399i:79-99]

aaac    ug       c     ac        -  a   u    ----g     a 
    cagu  uagggua cucuu  uuggcaag ca ugg gauu     uugca a
    ||||  ||||||| |||||  |||||||| || ||| ||||     ||||| c
    guca  AUCCCGU GAGAG  AACCGUuc gu gcu cuag     gacgu a
-uuu    gu       U     GA        u  g   -    uuuaa     u 

>ptc-MIR399j (-44.30)   [ptc-miR399j:82-102]

--------   auuaca       ac    a        ca  -    --    c      uu 
        ugc      gggcaag  cucc uuggcagg  gc cacu  aaag augcau  a
        |||      |||||||  |||| ||||||||  || ||||  |||| ||||||  a
        acG      CCUGUUU  GAGG AACCGUcu  cg guga  uuuc ugcgua  a
ucuucuaa   -----G       -A    A        cc  u    au    u      uu 

>ptc-MIR399k (-47.20)   [ptc-miR399k:66-86]

-   gc    c                       --  --       aa 
 gga  auug ugagcaaauuuccuuuggcagau  ac  cauaagu  c
 |||  |||| |||||||||||||||||||||||  ||  |||||||  a
 ccu  uaac ACUCGUUUAGAGGAAACCGUuua  ug  guauucg  a
a   --    C                       cu  uu       ag 

>ptc-MIR399l (-40.12)   [ptc-miR399l:81-101]

aacu     aau   uu            a      --g    -      caacu 
    aguua   ggc  cucuucuuuggc ggugau   guau agauua     u
    |||||   |||  |||||||||||| ||||||   |||| ||||||     a
    ucaau   CCG  GAGAGGAAACCG ccauug   uaug ucuaau     u
-ccu     CUC   UU            C      acu    a      uucga 

>ptc-MIR403a (-36.28)   [ptc-miR403a:103-123]

a    u   u ag        a            --a     aaaaaucccaucaaacacaaauuaaaau     aua  a 
 ggca auu c  guuugugc ugaaucuaauau   gcuaa                            acuag   gc a
 |||| ||| |  |||||||| ||||||||||||   |||||                            |||||   || u
 cugu uaa G  CAAACACG ACUUAGAUUaug   ugauu                            ugauc   cg c
-    c   u CU        C            aua     ----------------------------     --a  a 

>ptc-MIR403b (-38.94)   [ptc-miR403b:71-91]

acu  u   u u       u                 --cacaac   uc 
   ca auc c aguuugu cguggaucugacgccau        cgu  a
   || ||| | ||||||| |||||||||||||||||        |||  u
   gu uag G UCAAACA GCACUUAGAUUgcggua        gca  u
-cu  c   c C       C                 accuacca   cu 

>ptc-MIR408 (-52.00)   [ptc-miR408:76-96]

a   a  g u aaga       c      a      a        cu     aa 
 gag ca a g    cggggaa aggcag gcaugg uggagcua  aacag  g
 ||| || | |    ||||||| |||||| |||||| ||||||||  |||||   
 cuc gu u C    GUCCCUU UCCGUC CGUAcc aucucggu  uuguu  u
-   g  g u ---G       C      A      c        -u     ca 

>ptc-MIR472a (-37.20)   [ptc-miR472a:56-77]

u   c         -  cg           uuu   u  ug 
 uau gggugggug ag  gggaagauaac   ggu uu  a
 ||| ||||||||| ||  |||||||||||   ||| ||   
 aua CCUACCCAC UC  CCCUUUUauug   uca ga  g
g   C         C  AU           --u   u  ua 

>ptc-MIR472b (-36.30)   [ptc-miR472b:46-67]

uuacu         -   g           u      
     ggaugggug agu gggaagauaac aagcu 
     ||||||||| ||| ||||||||||| |||| c
     CCUACCCAC UCA CCCUUUUauug uuugu 
gauaC         C   A           -      

>ptc-MIR473a (-45.90)   [ptc-miR473a:8-27]

a   uu             -      C  c  aauaac    ua    -   gu 
 uug  cACUCUCCCUCAA GGCUUC Aa gc      cagc  cgua cau  a
 |||  ||||||||||||| |||||| || ||      ||||  |||| |||   
 aac  gugagaggggguu ccggag uu cg      gucg  gcau gug  a
-   ug             u      -  -  ---gac    --    u   uc 

>ptc-MIR473b (-33.00)   [ptc-miR473b:6-25]

-----u   c      -  UC        CAac  agua   ag uac    au 
      gcu GCUCUC CC  AGGGCUUC    gc    agc  g   gugc  g
      ||| |||||| ||  ||||||||    ||    |||  |   ||||   
      uga ugagag gg  uucuggag    cg    ucg  c   uacg  u
aacuag   -      u  -u        --cu  gacg   cu uua    ac 

>ptc-MIR474a (-32.40)   [ptc-miR474a:3-26]

-uc    A U      GUU   CU   c   cggacccaaugcuauugggu 
   CAAA G UGCUGG   UGG  GGG agg                    u
   |||| | ||||||   |||  ||| |||                    c
   guuu c acgacc   auc  cuc ucc                    a
aaa    c c      acu   uu   u   uuucuucacaacccaggacg 

>ptc-MIR474b (-41.50)   [ptc-miR474b:3-26]

-u      -  --              GGGcagccagauccagugcuauugggu 
  uCAAAA GU  UGUUGGGUUUGGCU                           c
  |||||| ||  ||||||||||||||                           c
  aguuuu ca  acaaccuagaucga                           u
uc      u  uu              acuguucugguuuaucgcaacagauug 

>ptc-MIR474c (-22.30)   [ptc-miR474c:47-70]

gaca  aa     c          ccug auu  ggu 
    gu  agcua auccaauagu    g   cu   c
    ||  ||||| ||||||||||    |   ||    
    cG  UCGGU UGGGUUGUCG    C   ga   a
ucga  GG     U          AAAA -gu  aua 

>ptc-MIR475a (-51.60)   [ptc-miR475a:101-121]

               c            a    gau   u  agcaauaacucucuuugcua 
caucuugaucaaugg cauuguaagagu gaag   cca ga                    a
||||||||||||||| |||||||||||| ||||   ||| ||                     
guaGAAUUAGUUACC GUGACAUUcuca cuuu   ggu cu                    a
               C            -    -au   c  caguuacaaaauagugugua 

>ptc-MIR475b (-41.30)   [ptc-miR475b:98-118]

              c            a    g   -------------------   -ga     uaa 
aucuugaucaaugg cauuguaagagu gaag auc                   cau   agcaa   c
|||||||||||||| |||||||||||| |||| |||                   |||   |||||   u
uaGAAUUAGUUACC GUGACAUUcuua cuuu uag                   gua   ucguu   c
              C            -    a   uucucagauaaaccagcgu   aag     ucu 

>ptc-MIR475c (-45.97)   [ptc-miR475c:100-120]

u   a      a      c         a  -      uccau        aacucucuu    g 
 aac ucuuga caaugg cauuguaag gu aagugg     gagucaau         ugca a
 ||| |||||| |||||| ||||||||| || ||||||     ||||||||         ||||  
 uug aGAAUU GUUACC GUAACAUUc ca uuuauc     cucaguua         acgu a
-   g      A      U         c  c      -----        cgaaacagu    a 

>ptc-MIR475d (-39.80)   [ptc-miR475d:77-97]

a       c          c a          a  -----    -  c   aag 
 uaacauc ugaucaaugg c uuguaagagu ga     agga uc aug   c
 ||||||| |||||||||| | |||||||||| ||     |||| || |||    
 auuguaG AUUAGUUACC G GACAUUcuca cu     uccu ag uac   a
-       A          U A          c  uauag    c  u   aaa 

>ptc-MIR476a (-37.79)   [ptc-miR476a:7-27]

---uua         -  CU                u     uuuuccu 
      agcUAGUAA UC  UCUUUGCAAAGucauu auuau       u
      ||||||||| ||  |||||||||||||||| |||||        
      ucgaucauu ag  agaaacguuucaguaa uaaua       c
ucuaaa         u  au                c     ucauuaa 

>ptc-MIR476b (-36.50)   [ptc-miR476b:3-23]

--------        U   -          Au          cc   cu 
        gcUAGUAA UCU UCUUUGCAAA  cauuaauuau  uag  c
        |||||||| ||| ||||||||||  ||||||||||  |||   
        cgaucauu aga agaaacguuu  guaauuaaua  auu  u
uucuaaau        u   u          cg          uc   aa 

>ptc-MIR476c (-36.50)   [ptc-miR476c:3-23]

--------        U   -          Au          cc   cu 
        gcUAGUAA UCU UCUUUGCAAA  cauuaauuau  uag  c
        |||||||| ||| ||||||||||  ||||||||||  |||   
        cgaucauu aga agaaacguuu  guaauuaaua  auu  u
uucuaaau        u   u          cg          uc   aa 

>ptc-MIR477a (-45.60)   [ptc-miR477a:3-23]

                 U        -   --a    au   a 
caAUCUCCCUCAGAGGC UCCAAuau cuc   guuu  agu a
||||||||||||||||| |||||||| |||   ||||  |||  
guuagaggggguuuccg agguugua gag   uaaa  ucg u
                 u        a   caa    cu   u 

>ptc-MIR477b (-40.20)   [ptc-miR477b:3-23]

       C         U        -    --    au   a 
caAUCUC CUCAGAGGC UCCAAuau cuca  guuu  agu a
||||||| ||||||||| |||||||| ||||  ||||  |||  
guuagag ggguuuccg agguugua gagu  uaaa  ucg u
       u         u        a    aa    cu   u 

>ptc-MIR478a (-29.00)   [ptc-miR478a:70-93]

--c     ---uu     uuaaa       cauuuu g  g       ua 
   ucccu     uaggg     acgucaa      a ac agucucu  u
   |||||     |||||     |||||||      | || |||||||  u
   AGGGA     AUCUU     UGCAGUu      u ug ucaggga  u
guc     UUUUU     --CUG       uuuuau g  g       uu 

>ptc-MIR478b (-30.10)   [ptc-miR478b:71-94]

uc     ---uu     uuaaa       cauuuu g  g    u    u 
  ucccu     uaggg     acgucaa      a ac aguc ccua u
  |||||     |||||     |||||||      | || |||| ||||  
  AGGGA     AUCUU     UGCAGUu      u ug ucag ggau u
cc     UUUUU     --CUG       uuuuau g  g    -    u 

>ptc-MIR478c (-19.50)   [ptc-miR478c:70-93]

uc     ---uu     uuaa       uauuuu g  g  uu     u 
  uccuu     uaggg    augucaa      a ac ag  uucua u
  |||||     |||||    |||||||      | || ||  |||||  
  AGGGA     AUCUU    UGCAGUu      u ug uc  gggau u
cc     UUUUU     -CUG       uuuuau g  g  -u     u 

>ptc-MIR478d (-20.40)   [ptc-miR478d:64-87]

auccuaaucuauaa uc     uuuu    -   gg         uuuuu  g 
              g  uccua    uaga gau  acguuaacu     gu a
              |  |||||    |||| |||  |||||||||     || a
              c  AGGAU    AUCU CUG  UGCAGUuga     cg u
-------guaagaa cA     UUUU    U   --         ---uc  a 

>ptc-MIR478e (-23.72)   [ptc-miR478e:52-75]

-g   cu              cg  caucauauuu     g   gg 
  agu  ucuaucuuuaagaa  ga          cucgu aau  u
  |||  ||||||||||||||  ||          ||||| |||   
  uca  agauAGGGAUUUUU  CU          GAGCA Uua  c
ga   -c              AU  -------UCU     G   au 

>ptc-MIR478f (-15.70)   [ptc-miR478f:36-59]

-aa  a     uuuu      c g      uu 
   gu ucuua    uaggag c auguca  u
   || |||||    |||||| | ||||||   
   cA GGGAU    AUCUUC G UACAGU  u
agc  -     UUUU      U -      uu 

>ptc-MIR478h (-25.70)   [ptc-miR478h:70-93]

uc     ---uu    -   aa    c  uauuuu g  g    u    a 
  uccuu     uagg gac  acgu aa      a ac aguc ccua u
  |||||     |||| |||  |||| ||      | || |||| |||| u
  AGGGA     AUCC CUG  UGCA Uu      u ug ucag ggau u
cc     UUUUU    U   --    A  -uuuac g  g    -    u 

>ptc-MIR478i (-20.20)   [ptc-miR478i:34-57]

a   u     uuuu    -   ug      u 
 guc ccuaa    uagg gac  auguua u
 ||| |||||    |||| |||  ||||||  
 cAG GGAUU    AUCC CUG  UGCAAU u
c   -     -UUU    U   --      u 

>ptc-MIR478j (-20.20)   [ptc-miR478j:34-57]

a   u     uuuu    -   ug      u 
 guc ccuaa    uagg gac  auguua u
 ||| |||||    |||| |||  ||||||  
 cAG GGAUU    AUCC CUG  UGCAAU u
c   -     -UUU    U   --      u 

>ptc-MIR478k (-20.20)   [ptc-miR478k:34-57]

a   u     uuuu    -   ug      u 
 guc ccuaa    uagg gac  auguua u
 ||| |||||    |||| |||  ||||||  
 cAG GGAUU    AUCC CUG  UGCAAU u
c   -     -UUU    U   --      u 

>ptc-MIR478l (-20.20)   [ptc-miR478l:34-57]

a   u     uuuu    -   ug      u 
 guc ccuaa    uagg gac  auguua u
 ||| |||||    |||| |||  ||||||  
 cAG GGAUU    AUCC CUG  UGCAAU u
c   -     -UUU    U   --      u 

>ptc-MIR478m (-20.20)   [ptc-miR478m:34-57]

a   u     uuuu    -   ug      u 
 guc ccuaa    uagg gac  auguua u
 ||| |||||    |||| |||  ||||||  
 cAG GGAUU    AUCC CUG  UGCAAU u
c   -     -UUU    U   --      u 

>ptc-MIR478n (-20.20)   [ptc-miR478n:34-57]

a   u     uuuu    -   ug      u 
 guc ccuaa    uagg gac  auguua u
 ||| |||||    |||| |||  ||||||  
 cAG GGAUU    AUCC CUG  UGCAAU u
c   -     -UUU    U   --      u 

>ptc-MIR478o (-26.50)   [ptc-miR478o:70-93]

uc     ---uu     auaa       uauuuua    --    u    a 
  uccuu     uagga    acguuaa       gacg  aguc ccua a
  |||||     |||||    |||||||       ||||  |||| |||| u
  AGGGA     AUCCU    UGCAAUu       cugu  ucag ggau u
cc     UUUUU     -CUG       ---uuua    ag    -    u 

>ptc-MIR478p (-27.40)   [ptc-miR478p:70-93]

uc     --uuu     caa       uauuuua   --g    u    a 
  uccuu     uggga   acguuaa       gac   aguc ccua u
  |||||     |||||   |||||||       |||   |||| |||| u
  AGGGA     AUCCU   UGCAAUu       cug   ucag ggau u
cc     UUUUU     CUG       ---uuua   uaa    -    u 

>ptc-MIR478q (-26.70)   [ptc-miR478q:70-93]

uc     ---uu    -   aa       uguuuua   --g    u    a 
  uccuu     uagg gau  acguuaa       gac   aguc ccua a
  |||||     |||| |||  |||||||       |||   |||| |||| u
  AGGGA     AUCC CUG  UGCAAUu       cug   ucag ggau u
cc     UUUUU    U   --       ---uuua   uaa    -    u 

>ptc-MIR478r (-15.10)   [ptc-miR478r:33-56]

a   u     uuug   -   -  a  uc 
 guc ccuag    agg gac ug ua  a
 ||| |||||    ||| ||| || ||  u
 cAG GGAUU    UCC CUG GC AU  u
c   -     UUUA   U   U  A  uu 

>ptc-MIR478s (-24.80)   [ptc-miR478s:70-93]

--    -auuuu    -   aa       uguuuua   --g    u    a 
  ucuc      uagg gau  acguuaa       gac   aguc ccua a
  ||||      |||| |||  |||||||       |||   |||| |||| u
  AGGG      AUCC CUG  UGCAAUu       cug   ucag ggau u
cc    AUUUUU    U   --       ---uuua   uaa    -    u 

>ptc-MIR478u (-26.60)   [ptc-miR478u:70-93]

uc     ---uu    -   aa       uauuuua    --    u    a 
  uccuu     uagg gau  acguuaa       gacg  aguc ccua u
  |||||     |||| |||  |||||||       ||||  |||| |||| u
  AGGGA     AUCC CUG  UGCAAUu       cugu  ucag ggau u
cc     UUUUU    U   --       ---uuua    ag    -    u 

>ptc-MIR479 (-38.80)   [ptc-miR479:3-24]

  U           C      AUCuucugugcauaagcauc 
gg GUGAUAUUGGU CGGCUC                    u
|| ||||||||||| ||||||                    g
uc cacuauaacua gccgag                    a
  u           a      cagaaguacucacuucuuga 

>ptc-MIR480a (-21.60)   [ptc-miR480a:111-134]

uaa    -  ug g  ug  ccu   -u     auaauagacccacaccugacugcuuagaauuauuuguu 
   uaug uu  g gu  au   ugu  uaguu                                      a
   |||| ||  | ||  ||   |||  |||||                                       
   auac AA  U CA  UA   ACA  AUCAa                                      u
-aa    C  GU G  GU  -CU   UC     gagacaaaaaguugcaguuauuacaucagccuauacgc 

>ptc-MIR480b (-20.20)   [ptc-miR480b:111-134]

uaa    -  ug g  ug  ccu   -u     auaauagacccacaccugacugcuuagaauuauuuguu 
   uaug uu  g gu  au   ugu  uaguu                                      a
   |||| ||  | ||  ||   |||  |||||                                       
   auac AA  U UA  UA   ACA  AUCAa                                      u
-aa    C  GU G  GU  -CU   UC     gagacaaaaaguugcaguuauuacaucagccuauccgc 

>ptc-MIR481a (-25.10)   [ptc-miR481a:68-91]

ga  g     -   --gu      -agu   g     caaag      g 
  gg uuaag ugu    uggggu    gga auggu     auguua a
  || ||||| |||    ||||||    ||| |||||     |||||| g
  uC AAUUC ACA    ACUCCA    ccu uacua     uauaau a
-a  G     G   AUUC      GGAu   a     ---aa      a 

>ptc-MIR481b (-61.20)   [ptc-miR481b:6-29]

---a  cu    C ---   -     C          a      u  gau      uu  c     aucagagccuugauaaccaaguggucucgaguuugaaucucaucaucc 
    uc  AGGA C   UCA CUUAA AGCUUAAGCu uugggu ga   gguucu  ga augau                                                u
    ||  |||| |   ||| ||||| |||||||||| |||||| ||   ||||||  || |||||                                                c
    ag  ucuu g   agu ggguu ucgaauucga aaucca cu   ccaagg  uu uacua                                                a
uuac  uu    a uaa   u     a          c      -  ---      uc  a     aauauaauaagagauuguguggggaaauucauaaaaaauaguuuauuu 

>ptc-MIR481c (-50.50)   [ptc-miR481c:6-29]

auc    G  -   A     CAGCUU        -     -     gauucu   a   gauaucagagcuuugaugaccaagcggucacgaguucgaaucuca 
   cuAG AC CUC CUUAA      AAGCuuuu ggguu gagau      uug cau                                             c
   |||| || ||| |||||      |||||||| ||||| |||||      ||| |||                                              
   gauu ug ggg gaguu      uucgagaa cccga cuuug      aac gug                                             c
---    g  u   g     --cacu        a     a     ------   -   ucugaguguaauggaacacgaauuaaaauaguuuauuuaccccua 

>ptc-MIR481d (-29.90)   [ptc-miR481d:114-137]

ggc   ca   --agg   ca   aaag    ---  a        ----   u     -ggc        gua 
   agu  aag     ggg  agg    ggga   ga uuauguua    cug cacuu    uguuauuc   g
   |||  |||     |||  |||    ||||   || ||||||||    ||| |||||    ||||||||   a
   uCG  UUC     UCC  UCC    ucuu   cu aauauaau    gau guggg    acaguaag   a
uua   AA   GACAA   AC   AGAA    aua  a        aaga   u     aguu        auc 

>ptc-MIR481e (-55.80)   [ptc-miR481e:6-29]

auc    G  -   A   AAC  CUU     -a       -     gauucu   a     uaucagagccuugaugaccaaguggucacgaguucgaaucuca 
   cuAG AC CUC CCU   AG   AAGCu  uuggguu gagau      uug caugg                                           c
   |||| || ||| |||   ||   |||||  ||||||| |||||      ||| |||||                                           c
   gauu ug ggg gga   uc   uucga  aacccga cuuug      aac guauc                                           a
---    a  u   -   -gu  acu     ga       a     ------   -     cggguguaauggaacacgaacuaaaaauaguuuauuuauccuc 

>ptc-MIR482 (-46.30)   [ptc-miR482.2:68-87] [ptc-miR482.1:73-89]

     c   c    cuu     a      -    u           ----       
gaguc uag aagu   uggag ugggag agua gcaagaaggaa    aaauuc 
||||| ||| ||||   ||||| |||||| |||| |||||||||||    ||||| a
cucag guc uucg   aCCUU ACCCUC UCAU CGUUCUuucuu    uuuagu 
     c   u    ucu     -      C    C           auaa       

>mmu-mir-463 (-20.20)   [mmu-miR-463*:4-25] [mmu-miR-463:41-62]

-----------        A  U  U    ---      guaa 
           cuuUACCU AU UG UGUC   CAUCAU    a
           |||||||| || || ||||   ||||||    a
           gaGAUGGA UA AC ACAG   GUagua    c
ucacuuggaag        A  U  C    AUA      aaua 

>mmu-mir-464 (-13.20)   [mmu-miR-464:47-69]

accuuguuaugggg    ---       ----  -    g  au 
              gucu   gggguaa    gg agug uc  c
              ||||   |||||||    || |||| ||   
              UAGA   UCUUAUU    CC Ucau gg  a
-----------agA    GUG       UGAA  A    g  gg 

>mmu-mir-465a (-23.40)   [mmu-miR-465a-5p:5-27] [mmu-miR-465a-3p:42-63]

----   -----          U   A     G    aaaa 
    gcc     cUAUUUAGAA GGC CUGAU UGAu    u
    |||     |||||||||| ||| ||||| ||||     
    cgg     GAUGAAUCUU CCG GACUA Guua    a
cauu   aaugA          U   G     -    aaaa 

>mmu-mir-466a (-22.70)   [mmu-miR-466a-5p:11-32] [mmu-miR-466a-3p:50-72]

--ua       uUA          C   --  -     g 
    uaugugu   UGUGUGUGUA AUG  UA CAUAu u
    |||||||   |||||||||| |||  || |||||  
    AUACACA   GCACAUACAU Uac  au guaua g
cAGA       --C          A   cu  a     a 

>mmu-mir-467a-1 (-32.10)   [mmu-miR-467a:10-31] [mmu-miR-467a-1*:46-67]

c      c   A   CC  C             ua 
 ugugug gUA GUG  UG AUGUAUAUGCGug  u
 |||||| ||| |||  || |||||||||||||  a
 acacaC CAU CAC  AC UACAUAUAcguau  u
u      A   C   AC  A             uu 

>mmu-mir-468 (-14.80)   [mmu-miR-468:53-75]

-aua   a  uug   ug  -  g c  a gu     uaa 
    aga ac   gcg  uc gu a ug u  acuga   g
    ||| ||   |||  || || | || |  |||||    
    UCU UG   CGU  AG CA U AU g  ugacu   a
ucuG   G  -UG   GU  U  G -  a ug     caa 

>mmu-mir-469 (-22.70)   [mmu-miR-469:6-31]

-----c  g         UCA  GA       GUCC  a 
      gc gUGCCUCUU   UU  UCUUGGU    uc a
      || |||||||||   ||  |||||||    || a
      ug ugcgggggg   ag  ggaaccg    ag u
uuccga  g         ugg  aa       --aa  u 

>mmu-mir-470 (-29.90)   [mmu-miR-470:9-31] [mmu-miR-470*:44-65]

----cag         UG  CU  C      -GA   aa 
       ugcucUUCU  GA  GG ACUGGU   GUu  a
       |||||||||  ||  || ||||||   |||   
       augAGAAGA  CU  CC UGACCA   uaa  c
acucgaa         GU  UU  A      Aca   au 

>mmu-mir-471 (-26.30)   [mmu-miR-471:7-28]

gug  u          A UG        a  aa 
   cu UACGUAGUAU G  CUUUUCAC uu  a
   || |||||||||| |  |||||||| ||   
   ga auguaucaua c  ggaaagug aa  c
-ag  u          c gu        a  aa 

>ath-MIR447a (-111.20)   [ath-miR447a:160-181]

      ua              uu    a     u  a      aca         a            -      ug   u      cgagcuugguguuuuuuucuagccaacucc 
cauucu  auauauaauacuac  uuuc uccau aa ccccuu   augucgagu aacgaagcaucu gucccc  gua ugucuu                              a
||||||  ||||||||||||||  |||| ||||| || ||||||   ||||||||| |||||||||||| ||||||  ||| ||||||                               
gugaga  uauauauuaugaug  aaag aggua uu ggggaa   uauagcuca UUGUUUUGUAGA CAGGGG  uau acagag                              a
      gc              uu    a     u  c      gaa         G            G      UU   u      uucuuauguuuguuacuaguugagcucuug 

>ath-MIR447b (-105.80)   [ath-miR447b:159-180]

             c        uu    a     u  u      aca         a            -      ug   --u    uucgagcuugguguguuuuucuagccagcc 
cauucuuaauaua aauacuac  uuuc uccau aa ccccuu   augucgagu aacgaagcaucu gucccc  gua   uguc                              c
||||||||||||| ||||||||  |||| ||||| || ||||||   ||||||||| |||||||||||| ||||||  |||   ||||                              c
guaagaguuauau uuaugaug  aaag aggua uu ggggaa   uauagcuca UUGUUUUGUAGA CAGGGG  uau   acag                              a
             a        uu    a     u  c      gaa         G            G      UU   uac    ucuuauguuuguuacuaguugagcucuuga 

>ath-MIR447c (-72.00)   [ath-miR447c:121-142]

       a     c      u uu    a g   u  g      aca         a       c    -    g u        cu  g  cuu     u 
cauucuu auaua aauacu c  uuuc u cau aa ccccuu   augucgagu aacaaag augu gucc c aauauugu  uc ag   gguau u
||||||| ||||| |||||| |  |||| | ||| || ||||||   ||||||||| ||||||| |||| |||| | ||||||||  || ||   |||||  
guaagaa uauau uuauga g  aaag a gug uu ggggaa   uauagcuca UUGUUUU UACA CAGG G Uuauggca  ag uc   uuaug u
       c     a      u uu    a g   u  g      gaa         G       C    G    G U        -u  -  ---     u 

>ssc-mir-105-1 (-43.40)   [ssc-miR-105-1:13-32]

ugu         U  A          UC        g ug 
   gcaucguag CA AUGCUCAGAC  CUGUggug c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcauc gu uacgaguuug  ggcaccac g  c
auc         -  g          ua        - ua 

>ssc-mir-105-2 (-39.20)   [ssc-miR-105-2:13-32]

ugu         U  A          -   UUG    c   u 
   gcaucgugg CA AUGCUCAGAC UCC   gugg ugc u
   ||||||||| || |||||||||| |||   |||| |||  
   ugugguauc gu uacgaguuug agg   cacc acg a
auc         -  g          u   ---    -   u 

>ssc-mir-106a (-30.40)   [ssc-miR-106a:13-36]

  u   cc      -        A  G     G   C  u 
cc ugg  guguAA AAGUGCUU CA UGCAG UAG uu u
|| |||  |||||| |||||||| || ||||| ||| || u
gg acc  uacauu uucacgaa gu acguc auc ag g
  u   au      c        c  a     -   u  a 

>ssc-mir-122 (-44.20)   [ssc-miR-122:15-37]

c        -      GG       C           --U  c 
 cuuagcag agcugU  AGUGUGA AAUGGUGUUUG   gu c
 |||||||| ||||||  ||||||| |||||||||||   ||  
 ggauuguc ucgaua  ucacacu uuaccgcaaac   ca a
c        a      aa       a           uau  a 

>ssc-mir-125b-2 (-40.60)   [ssc-miR-125b:17-38]

a  aga   uu     UC  UG   C   A        -gg   u 
 cc   cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
 ||   |||  |||||  ||  ||| ||| ||||||||   |||  
 gg   gag  ggauc  gg  ucu gga ugaacacu   aug u
a  --g   gc     ca  gu   c   c        aca   a 

>ssc-mir-135-1 (-45.52)   [ssc-miR-135:17-39]

a g         u u          UU            uucua 
 g ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
 | ||||||||| | ||||||||||  ||||||||||||     u
 c ggggcggca g ggugccgagg  uagggauauacu     g
a a         c c          -u            uacuc 

>ssc-mir-135-2 (-35.10)   [ssc-miR-135:23-45]

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 

>ssc-mir-145 (-40.02)   [ssc-miR-145:16-39]

ca  u  u     c  UC    U  C            Uagau 
  cc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
  || || ||||| ||  |||| || ||||||||||||     c
  gg ac ggagu uc  guca aa gguccuuagggg     u
--  u  u     -  uu    u  a            uagag 

>ssc-mir-148a (-28.20)   [ssc-miR-148a:44-65]

              -  -a    cc    -   aa 
gaggcaaaguucug ag  cacu  gacu cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 

>ssc-mir-15b (-32.70)   [ssc-miR-15b:20-41]

u    --g       gua   U       C  C      UA   a  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  a
 acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
u    aaa       aaa   c       u  u      gc   -  ac 

>ssc-mir-181b-2 (-35.00)   [ssc-miR-181b:13-36]

---a   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUU ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     guaaguaac  uagucacucaa cu  g
acaa   a     caaac         --           -  aa 

>ssc-mir-184 (-38.60)   [ssc-miR-184:52-73]

c       auc         c      ag     -    ug 
 cagucac   cccuuauca uuuucc  ccagc uuug  a
 |||||||   ||||||||| ||||||  ||||| ||||   
 guuagug   GGGAAUAGU AAGAGG  GGUug aaau  c
a       gaU         C      CA     u    cu 

>ssc-mir-19a (-39.10)   [ssc-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>ssc-mir-20 (-31.00)   [ssc-miR-20:8-29]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAg ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>ssc-mir-216 (-35.70)   [ssc-miR-216:19-39]

----------gaug   g  ag     u         CU   A      --a   -  u 
              gcu ug  uuggc UAAUCUCAG  GGC ACUGUG   gau gu c
              ||| ||  ||||| |||||||||  ||| ||||||   ||| ||  
              cga ac  aaucg auuaggguc  cug ugacac   cua ca a
ucccguuccuuuaa   g  -a     u         -u   g      ccc   a  u 

>ssc-mir-217 (-30.20)   [ssc-miR-217:32-55]

auaauuauuacaga    uu     c c  a  C     C          U -   aag 
              guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
              ||||  ||||| | || || ||||| |||||||||| | |||    
              caaa  cuacg c uc gu acgua uucuugacua c cug   a
-----------gaa    -u     a u  c  u     a          c a   guu 

>ssc-mir-224 (-33.90)   [ssc-miR-224:8-30]

       CA         U   U      A u   ag  u 
gggcuuu  AGUCACUAG GGU CCGUUU g aga  gu u
|||||||  ||||||||| ||| |||||| | |||  || u
cccgaaa  ucagugauc ccg gguaaa c uuu  ua g
       ca         -   u      a -   gu  c 

>ssc-mir-23a (-30.80)   [ssc-miR-23a:42-62]

---  gc     -       g    g      c  c 
   cg  ugggg uuccugg gaug gauuug ug c
   ||  ||||| ||||||| |||| |||||| || u
   gc  aCCUU AGGGACC UUAC CUAaac ac g
cca  ua     U       G    A      -  u 

>ssc-mir-24-1 (-24.10)   [ssc-miR-24*:12-35] [ssc-miR-24:50-71]

cucugccu  c  G   A         AACA     gauu 
        cc GU CCU CUGAGCUGA    CAGUu    u
        || || ||| |||||||||    |||||     
        gG CA GGA GACUUGACU    GUcag    g
--------  A  A   C         --CG     acgu 

>ssc-mir-26a (-42.24)   [ssc-miR-26a:14-35]

      gg ug  UU         C          guuucc 
ggcugu  c  ga  CAAGUAAUC AGGAUAGGCU      a
||||||  |  ||  ||||||||| ||||||||||       
ucgacg  g  cu  guucauuag ucuuauccgg      u
      ga gu  uu         u          aguguc 

>ssc-mir-28 (-43.85)   [ssc-miR-28-5p:14-35] [ssc-miR-28-3p:54-75]

   c         A           C    U  AGuugccuu 
ggu cuugcccuc AGGAGCUCACA UCUA UG         u
||| ||||||||| ||||||||||| |||| ||          
uca ggacgggAG UCCUCGAGUGU AGAU AC         c
   c         G           U    C  cccuucugu 

>ssc-mir-29b (-34.02)   [ssc-miR-29b:51-70]

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     a
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucuu UGACUAAAGU UACCAC  GAUcug     g
g         g          U      --      uuagu 

>ssc-mir-301 (-23.60)   [ssc-miR-301:48-70]

--   aa  a     c    ---u      c   ----a       
  gcu  ca augcu ugac    uuauug acu     cuguac 
  |||  || ||||| ||||    |||||| |||     ||||| u
  cga  gu uaCGA ACUG    GAUAAC UGA     gacauu 
ga   ga  c     A    UUAU      C   Ccauc       

>ssc-mir-323 (-37.00)   [ssc-miR-323:50-71]

---uu      u g        g u     gcgc  u    uua 
     gguacu g agagaggu g ccgug    gu cgcu   u
     |||||| | |||||||| | |||||    || ||||    
     cuaugg c uuUCUCCA C GGCAC    CA Gcgg   u
cuaau      - g        G U     AUUA  C    uau 

>ssc-mir-326 (-59.90)   [ssc-miR-326:56-75]

----       g            c       uugu c     gg   u 
    ucugucu uugggcuggagg agggccu    g aggcg  uug g
    ||||||| |||||||||||| |||||||    | |||||  |||  
    aggcgga gacccGACCUCC UCCCGGG    C UCCgc  gac c
acuu       -            U       ---U -     ua   u 

>ssc-mir-7 (-45.10)   [ssc-miR-7:23-46]

---    u  -      a  u        A     A       U      --     a 
   ugga gu uggucu gu cugugUGG AGACU GUGAUUU GUUGUU  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguauacc ucuga cacuaaa caacag  aaauc a
gac    c  u      -  c        g     -       -      cu     a 

>ssc-mir-95 (-41.50)   [ssc-miR-95:49-70]

a   c      c            uu         gaga 
 aca aguggg gcucaauaaaug  uguugaauu    u
 ||| |||||| ||||||||||||  |||||||||    g
 ugu ucaccc CGAGUUAUUUAU  GCAACUUaa    c
g   c      A            GG         auug 

>ssc-mir-140 (-39.30)   [ssc-miR-140:7-27] [ssc-miR-140*:45-67]

    -  A             A       uu   uc 
ccug cc GUGGUUUUACCCU UGGUAGg  acg  a
|||| || ||||||||||||| |||||||  |||   
ggaC GG CACCAAGAUGGGA ACCAUcu  ugu  u
    A  -             C       --   cg 

>ssc-mir-181c (-42.80)   [ssc-miR-181c:15-36]

caa      g    AA        CU       A     ggca 
   ggguuu gggg  CAUUCAAC  GUCGGUG GUuug    g
   |||||| ||||  ||||||||  ||||||| |||||    c
   uccgga cccc  gugaguug  cagcuac caaac    u
agg      g    ag        -c       -     ggac 

>ssc-mir-183 (-26.20)   [ssc-miR-183:6-28]

    g      --AC     GA        --   ac 
cugu UAUGGC    UGGUA  AUUCACUG  uga  a
|||| ||||||    |||||  ||||||||  |||   
gaca auaccg    gccau  uaagugac  gcu  g
    a      ggaa     --        ug   cu 

>ssc-mir-205 (-33.82)   [ssc-miR-205:7-28]

      UC           C        ucuca 
cucuug  CUUCAUUCCAC GGAGUCUG     u
||||||  ||||||||||| ||||||||     a
gaggac  gaagugaggug cuuuagac     c
      uc           a        caacc 

>ssc-mir-214 (-67.62)   [ssc-miR-214:71-91]

ggccu      acgga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 

>ssc-mir-27a (-44.70)   [ssc-miR-27a:54-74]

ugg  u    a  a         ug  u       g u cac 
   cc gggg gc gggcuuagc  cu gugagca g c   a
   || |||| || |||||||||  || ||||||| | |    
   gg cccc CG CUUGAAUCG  GA CACUUgu c g   g
--a  u    -  C         GU  -       g u aac 

>ssc-mir-32 (-31.90)   [ssc-miR-32:6-26]

        UG     U           -  uu  c 
ggagaUAU  CACAU ACUAAGUUGCa ug  gu a
||||||||  ||||| ||||||||||| ||  ||  
cuuuuaua  gugug ugauuuaacgu ac  cg c
        gu     -           g  uc  g 

>ssc-mir-325 (-36.70)   [ssc-miR-325:12-34]

--------------           CC   U                Uu gug 
              agugcuugguu  UAG AGGUGUUCAGUAAGUG  u   a
              |||||||||||  ||| ||||||||||||||||  |    
              ucacgaacuaa  auc uccacgaguuauuugc  a   c
ggucuuggaucgug           cu   c                uu aua 

>ssc-let-7c (-43.30)   [ssc-let-7c:16-37]

u      a      uU   G   U             ua  g ua a 
 gugugc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
 |||||| ||||||  ||| ||| |||||||||||||  || |  | c
 cacacg agguuc  uuc auc uccaacaugucaa  uu a  g g
u      -      cu   g   u             --  g gg u 

>ssc-let-7f (-40.70)   [ssc-let-7f:8-29]

u      U   GU                uuagggucauac 
 guggga GAG  AGUAGAUUGUAUAGUU            c
 |||||| |||  ||||||||||||||||             
 cacccu uuc  ucaucugacauaucaa            c
g      -   ug                uagagguucuac 

>ssc-let-7i (-42.10)   [ssc-let-7i:6-24]

     U                 U   --------  u     ugu 
cuggc GAGGUAGUAGUUUGUGC guu        gg cgggu   g
||||| ||||||||||||||||| |||        || |||||   a
gaucg uuccgucaucgaacgcg caa        uc gcccg   c
     -                 u   uagaggug  -     uua 

>ssc-mir-103-1 (-33.40)   [ssc-miR-103:50-72]

    c    c  --    u  u           c   u g a 
cuua ugcc uc  ggcu cu uacagugcugc uug u c u
|||| |||| ||  |||| || ||||||||||| ||| | |  
gagu acgg AG  UCGG GA AUGUUACGACG Aac a g a
    c    a  UA    -  C           -   u g u 

>ssc-mir-107 (-35.10)   [ssc-miR-107:52-74]

-      c      --c    u  u           c   u   a 
 uucucu ugcuuu   agcu cu uacaguguugc uug ggc u
 |||||| ||||||   |||| || ||||||||||| ||| ||| g
 gagaga acgaaA   UCGG GA AUGUUACGACG Aac uug g
c      c      CUA    -  C           -   -   a 

>ssc-mir-124a-2 (-35.92)   [ssc-miR-124a:53-73]

a      uc   cc        a   ga        uaaau 
 ggccuc  ucu  guguucac gcg  ccuugauu     g
 ||||||  |||  |||||||| |||  ||||||||     u
 ucgggg  aga  CGUAAGUG CGC  GGAAUuaa     c
g      ua   AC        G   AC        cauac 

>ssc-mir-128-1 (-35.90)   [ssc-miR-128:50-70]

u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 

>ssc-mir-136 (-45.80)   [ssc-miR-136:15-37]

u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuucugag uaaac   gcuacuaccu   a
u        a        -     ucu          cgc 

>ssc-mir-139 (-29.00)   [ssc-miR-139-5p:7-28]

gug       -  GU  AC           g gg 
   uauUCUA CA  GC  GUGUCUCCAGu u  c
   ||||||| ||  ||  ||||||||||| |  u
   augaggu gu  cg  cgcagaggucg a  c
-ca       u  ac  ga           g gg 

>ssc-mir-153 (-41.30)   [ssc-miR-153:53-72]

a     gg      -             gu       -a  aa 
 gcggu  ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuac AGUGAAAACACUG  ACGUUga  cg  u
g     aa      u             AU       cc  ag 

>ssc-mir-18 (-27.30)   [ssc-miR-18:14-35]

---gu         u   --   U   UC   U    A   -  aa u 
     gcuuuuugu cUA  AGG GCA  UAG GCAG UAg ug  g a
     ||||||||| |||  ||| |||  ||| |||| ||| ||  | g
     ugaagaaua ggu  ucc cgu  auc cguc auc ac  u a
uguau         c   cu   u   ga   c    -   u  ga u 

>ssc-mir-186 (-36.20)   [ssc-miR-186:15-37]

ugcuuau                 U     U      uau  uu 
       aacuuucCAAAGAAUUC CCUUU GGGCUU   ga  u
       ||||||||||||||||| ||||| ||||||   ||   
       uugaaggguuuuuuaag ggaaa cccgaa   uu  u
-----gu                 u     -      --u  ua 

>ssc-mir-196a (-48.80)   [ssc-miR-196a:22-43]

----------uugcuca     uc                  A          a ug   
                 gcuga  uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
                 |||||  |||||||||||||||||| |||||||||| |  | u
                 ugacu  acauugaguccgucaaag acaacggcuc a  uu 
cgggagcugcuauuggc     --                  a          a gu   

>ssc-mir-204 (-42.06)   [ssc-miR-204:32-53]

ggcua    ccuucucau     ucg     U          A     U    gagaau 
     cagu         gugac   uggac UCCCUUUGUC UCCUA GCCU      a
     ||||         |||||   ||||| |||||||||| ||||| ||||      u
     guca         uacug   acuug agggaaacgg agggu cgga      a
---cg    --------c     uua     c          a     -    ggaagu 

>ssc-mir-21 (-43.60)   [ssc-miR-21:18-39]

u      ccu      gU        A     A     A    u a 
 guacca   ugucgg  AGCUUAUC GACUG UGUUG cugu g a
 ||||||   ||||||  |||||||| ||||| ||||| |||| | u
 uauggu   acaguc  ucggguag cugac acaac ggua c c
c      uuu      ug        -     g     -    - u 

>ssc-mir-29c (-32.00)   [ssc-miR-29c:54-75]

a     uac   ggc           ucc       ---     u 
 ucucu   aca   ugaccgauuuc   ugguguu   cagag c
 |||||   |||   |||||||||||   |||||||   ||||| u
 agggg   ugu   AUUGGCUAAAG   ACCACGA   guuuu g
-     -na   agu           UUU       Ucu     u 

>ssc-mir-30c (-28.04)   [ssc-miR-30c:10-32]

--ga    uacU       U   ACA         guggaa 
    caga    GUAAACA CCU   CUCUCAGCu      a
    ||||    ||||||| |||   |||||||||       
    gucu    cauuugu gga   gagggucga      g
uucc    cucu       c   --a         aagaau 

>ssc-mir-9-1 (-42.00)   [ssc-miR-9-1:16-38]

c       guug   UC               G      u  ug 
 gggguug    uua  UUUGGUUAUCUAGCU UAUGAg gg  u
 |||||||    |||  ||||||||||||||| |||||| ||  g
 ccccaau    aau  aagccaauagaucga auacuu cu  g
a       -aaa   ga               a      -  ga 

>ssc-mir-9-2 (-40.10)   [ssc-miR-9-2:16-38]

g    c     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aau  aagccaauagaucga auacuu  g u
a    -     a   ga               a      cu g 

>hsa-mir-412 (-34.70)   [hsa-miR-412:54-76]

----cug      gg      a    c      u   aa    -    u 
       ggguac  ggaugg uggu gaccag ugg  agua auug u
       ||||||  |||||| |||| |||||| |||  |||| ||||  
       ccuaug  ccUGCC AUCA CUGGUC ACU  UCAu uaau u
gacgucg      --      G    C      C   --    g    c 

>hsa-mir-410 (-36.70)   [hsa-miR-410:50-70]

     c      g    ug      a  a     - uuuu 
gguac ugagaa aggu  ucugug ug guucg c    a
||||| |||||| ||||  |||||| || ||||| |     
ccaug acuuuU UCCG  AGACAC AU UAAgc g    u
     -      G    GU      A  A     a uaau 

>hsa-mir-376b (-34.00)   [hsa-miR-376b:62-83]

    ccuuc         u           a     u     uuuacg    u 
cagu     uuugguauu aaaacguggau uuccu cuaug      ugau c
||||     ||||||||| ||||||||||| ||||| |||||      |||| c
gucg     aaacuauga uuUUGUACCUA AAGGA GAUAC      auug u
    ----u         c           A     -     ----UA    g 

>hsa-mir-483 (-44.20)   [hsa-miR-483-5p:8-29] [hsa-miR-483-3p:48-68]

      -             A  A  G   -u   ucc 
gagggg gAAGACGGGAGGA AG AG GAG  ggu   a
|||||| ||||||||||||| || || |||  |||    
cucucc cUUCUGCCCUCCU UC UC CUc  ccg   u
      u             C  C  A   cu   cac 

>hsa-mir-484 (-33.80)   [hsa-miR-484:8-29]

a   ----uc      CUCA   C       AU   -c    a 
 gcc      gUCAGG    GUC CCUCCCG  aaa  cccu a
 |||      ||||||    ||| |||||||  |||  ||||  
 cgg      cggucc    cag ggggggc  uuu  ggga a
g   uuuuuu      ----   u       cc   ca    u 

>hsa-mir-485 (-34.40)   [hsa-miR-485-5p:9-30] [hsa-miR-485-3p:46-67]

   ug        CU       -    A    auuc 
acu  gagAGAGG  GGCCGUG AUGA UUCg    a
|||  ||||||||  ||||||| |||| ||||    u
uga  uUCUCUCC  UCGGCAC UACU Gagc    c
   uu        UC       A    -    gaaa 

>hsa-mir-486 (-48.50)   [hsa-miR-486-5p:4-25] [hsa-miR-486-3p:46-66]

gc                      ----   ccuu 
  aUCCUGUACUGAGCUGCCCCGA    Ggc    c
  ||||||||||||||||||||||    |||     
  UAGGACAUGACUCGACGGGGCu    ccg    a
ca                      cgac   ucgu 

>hsa-mir-487a (-30.30)   [hsa-miR-487a:49-70]

      u     g   uua      c    -    c   a 
gguacu gaaga ugg   ucccug ugug uucg uua u
|||||| ||||| |||   |||||| |||| |||| ||| u
cuauga uuuUU ACC   AGGGAC AUAC AAgc agu u
      c     G   UAC      -    U    -   a 

>kshv-mir-K12-10a (-32.40)   [kshv-miR-K12-10a*:6-27] [kshv-miR-K12-10a:46-67]

    aG        C    C   CAC     ugu 
cugg  GCUUGGGG GAUA CAC   Ucguu   c
||||  |||||||| |||| |||   |||||    
gacC  UGAGCCCC CUGU GUG   agcgg   u
    GG        C    U   AUu     uug 

>kshv-mir-K12-10b (-38.80)   [kshv-miR-K12-10b:46-67]

    ag        c    c     c     ugu 
cugg  gcuugggg gaua cacca ucguu   c
||||  |||||||| |||| ||||| |||||    
gacC  UGAGCCCC CUGU GUGGU agcgg   u
    GG        C    U     u     uug 

>kshv-mir-K12-11 (-24.40)   [kshv-miR-K12-11*:7-30] [kshv-miR-K12-11:46-67]

   u    U     C    A    UCU    -  gu 
cgc uuGG CACAG UUAA CAUU   AGGg cg  g
||| |||| ||||| |||| ||||   |||| ||   
gcg AGCC GUGUC GAUU GUAA   Uccu gu  u
   u    U     C    C    --U    a  au 

>kshv-mir-K12-1 (-22.80)   [kshv-miR-K12-1:3-25] [kshv-miR-K12-1*:41-62]

-   ---  A        U      AA    uaca 
 cgA   UU CAGGAAAC GGGUGU  GCug    u
 |||   || |||||||| ||||||  ||||    a
 gcu   AA GUCCUUUG UCCACG  CGgc    a
u   cCC  C        -      -A    cccu 

>kshv-miR-K12-2 (-33.51)   [kshv-miR-K12-2:15-36] [kshv-miR-K12-2*:58-78]

  -   u   u  c  A  G      G  UC      agccauu    c 
gg guc acu cg uA CU UAGUCC GG  GAUCUG       gaag a
|| ||| ||| || || || |||||| ||  ||||||       ||||  
cc cag ugg gc GU GA AUCGGG CC  CUAGac       cuuc a
  a   -   c  c  C  G      A  UU      -------    g 

>kshv-mir-K12-9 (-42.20)   [kshv-miR-K12-9*:7-28] [kshv-miR-K12-9:41-62]

    c   C          A    C    c u 
gggu uAC CAGCUGCGUA ACCC GCUg g a
|||| ||| |||||||||| |||| |||| |  
ccca AUG GUCGACGCAU UGGG Cgac c a
    A   C          A    U    a a 

>kshv-mir-K12-8 (-24.50)   [kshv-miR-K12-8*:6-27] [kshv-miR-K12-8:46-66]

    cA   C    C AA    --- C    uu u 
cgcg  CUC CUCA U  CGCC   C GCUu  g c
||||  ||| |||| |  ||||   | ||||  | u
gcgc  GAG GAGU A  GCGG   g cgaa  u g
    AC   A    C GC    AUC a    gg u 

>kshv-mir-K12-7 (-31.30)   [kshv-miR-K12-7*:7-30] [kshv-miR-K12-7:47-66]

g   u        C   ACG      U   -cu     
 cgu gAGCGCCA CGG   GGGAUU AUG   guau 
 ||| |||||||| |||   |||||| |||   ||| c
 gca cuCGCGGU GUU   CCCUAG Uac   cauu 
g   -        C   GUA      -   cau     

>kshv-mir-K12-6 (-32.20)   [kshv-miR-K12-6-5p:6-27] [kshv-miR-K12-6-3p:37-58]

    uC       A  U  -U        gg 
cuug  CAGCAGC CC AA  CCAUCGGc  u
||||  ||||||| || ||  ||||||||   
gagc  GUUGUCG GG UU  GGUAGUcg  c
    GA       -  C  UU        gg 

>kshv-mir-K12-5 (-27.50)   [kshv-miR-K12-5*:7-29] [kshv-miR-K12-5:46-68]

u    uA    -  C  U   GC      G u  ac 
 gacc  GGUA GU CC GGU  CCUAAG g cu  a
 ||||  |||| || || |||  |||||| | ||   
 cUGG  CCGU CA GG CCG  GGAUuc c ga  u
a    --    U  A  U   UA      a -  ac 

>kshv-mir-K12-4 (-23.40)   [kshv-miR-K12-4-5p:7-28] [kshv-miR-K12-4-3p:45-66]

    c      AA  G     C    --G    uu 
auaa uAGCUA  CC CAGUA UCUA   Ggca  c
|||| ||||||  || ||||| ||||   ||||   
uauu GUCGAU  GG GUCAU AGAU   uugu  a
    A      CC  A     A    aca    uu 

>kshv-mir-K12-3 (-31.70)   [kshv-miR-K12-3:6-28] [kshv-miR-K12-3*:48-68]

ggcua          AG   GGCA       g  u u 
     UCACAUUCUG  GAC    GCGAcgu ug c a
     ||||||||||  |||    ||||||| || |  
     AGUGUAAGAC  CUG    CGCUgca ac g a
-ccAC          -A   ---G       -  u c 

>mml-mir-200c (-31.30)   [mml-miR-200c:45-66]

  cu    -      a        u   u  ggu 
cc  cguc uuaccc gcaguguu ggg gc   u
||  |||| |||||| |||||||| ||| ||    
gg  GUAG AAUGGG CGUCAUAA cuc ug   g
  AG    U      C        u   -  agg 

>mml-mir-141 (-53.60)   [mml-miR-141:60-80]

u         u   u       --    u        -   ugg  ua 
 ggccggccc ggg ccaucuu  ccag acaguguu gga   uc  a
 ||||||||| ||| |||||||  |||| |||||||| |||   ||  u
 uuggcuggg ccc GGUAGAA  GGUC UGUCACAA ccu   ag  u
u         c   c       AU    -        u   cga  ug 

>ggo-mir-200c (-30.50)   [ggo-miR-200c:44-65]

    -   -      a        u   u  ggu 
ccuc guc uuaccc gcaguguu ggg gc   u
|||| ||| |||||| |||||||| ||| ||    
ggAG UAG AAUGGG CGUCAUAA cuc ug   g
    G   U      C        u   -  agg 

>ggo-mir-141 (-50.80)   [ggo-miR-141:60-80]

c    g    u   u       --    u        -   ugg  ua 
 ggcc gccc ggg ccaucuu  ccag acaguguu gga   uc  a
 |||| |||| ||| |||||||  |||| |||||||| |||   ||  u
 uugg uggg ccc GGUAGAA  GGUC UGUCACAA ccu   ag  u
c    g    c   c       AU    -        u   cga  ug 

>ppy-mir-200c (-31.30)   [ppy-miR-200c:45-66]

  cu    -      a        u   u  ggu 
cc  cguc uuaccc gcaguguu ggg gc   u
||  |||| |||||| |||||||| ||| ||    
gg  GUAG AAUGGG CGUCAUAA cuc ug   g
  AG    U      C        u   -  agg 

>ppy-mir-141 (-49.30)   [ppy-miR-141:60-80]

u    g    u   uu      --    u        -   ugg  ua 
 ggcc gccc ggg  caucuu  ccag acaguguu gga   uc  a
 |||| |||| |||  ||||||  |||| |||||||| |||   ||  u
 uugg uggg ccc  GUAGAA  GGUC UGUCACAA ccu   ag  u
c    g    c   cG      AU    -        u   cga  ug 

>ppa-mir-141 (-51.70)   [ppa-miR-141:60-80]

u    g        uc      --    u        -   ugg  ua 
 ggcc gcccuggg  caucuu  ccag acaguguu gga   uc  a
 |||| ||||||||  ||||||  |||| |||||||| |||   ||  u
 uugg uggggccc  GUAGAA  GGUC UGUCACAA ccu   ag  u
c    g        cC      AU    -        u   cga  ug 

>ggo-mir-15b (-32.70)   [ggo-miR-15b:20-41]

u    --g       gua   U       C  C      UA   g  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
u    aaa       aaa   c       u  u      gc   -  ac 

>age-mir-15b (-32.70)   [age-miR-15b:20-41]

u    --g       gua   U       C  C      UA   a  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
u    aaa       aaa   c       u  u      gc   -  ac 

>ppa-mir-15b (-32.70)   [ppa-miR-15b:20-41]

u    --g       gua   U       C  C      UA   g  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
u    aaa       aaa   c       u  u      gc   -  ac 

>ppy-mir-15b (-32.70)   [ppy-miR-15b:20-41]

u    --g       gua   U       C  C      UA   g  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
u    aaa       aaa   c       u  u      gc   -  ac 

>ptr-mir-15b (-32.70)   [ptr-miR-15b:20-41]

u    --g       gua   U       C  C      UA   g  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
u    aaa       aaa   c       u  u      gc   -  ac 

>mml-mir-15b (-32.70)   [mml-miR-15b:20-41]

u    --g       gua   U       C  C      UA   a  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
u    aaa       aaa   c       u  u      gc   -  ac 

>lla-mir-15b (-32.70)   [lla-miR-15b:20-41]

u    --g       gua   U       C  C      UA   a  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
u    aaa       aaa   c       u  u      gc   -  ac 

>mne-mir-15b (-32.70)   [mne-miR-15b:20-41]

u    --g       gua   U       C  C      UA   a  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
u    aaa       aaa   c       u  u      gc   -  ac 

>ptr-mir-23b (-36.04)   [ptr-miR-23b:58-80]

c     u c  -   c   u   --          -  c      gugacu 
 ucagg g uc ugg ugc ugg  guuccuggca ug ugauuu      u
 ||||| | || ||| ||| |||  |||||||||| || ||||||       
 gguuc c ag acc acg ACC  UAGGGACCGU AC ACUAaa      a
c     - -  c   a   C   AU          U  -      auuaga 

>ppy-mir-23b (-36.04)   [ppy-miR-23b:58-80]

c     u c  -   c   u   --          -  c      gugacu 
 ucagg g uc ugg ugc ugg  guuccuggca ug ugauuu      u
 ||||| | || ||| ||| |||  |||||||||| || ||||||       
 gguuc c ag acc acg ACC  UAGGGACCGU AC ACUAaa      a
c     - -  c   a   C   AU          U  -      auuaga 

>ppa-mir-23b (-36.04)   [ppa-miR-23b:58-80]

c     u c  -   c   u   --          -  c      gugacu 
 ucagg g uc ugg ugc ugg  guuccuggca ug ugauuu      u
 ||||| | || ||| ||| |||  |||||||||| || ||||||       
 gguuc c ag acc acg ACC  UAGGGACCGU AC ACUAaa      a
c     - -  c   a   C   AU          U  -      auuaga 

>mml-mir-30b (-37.60)   [mml-miR-30b:17-37]

a     uu      caU          U  -A        uaaua 
 ccaag  ucaguu   GUAAACAUCC AC  CUCAGCug     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   cauuuguagg ug  gggucggu     a
a     --      cuu          -  ga        uaggu 

>ptr-mir-30b (-37.60)   [ptr-miR-30b:17-37]

a     uu      caU          U  -A        uaaua 
 ccaag  ucaguu   GUAAACAUCC AC  CUCAGCug     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   cauuuguagg ug  gggucggu     a
a     --      cuu          -  ga        uaggu 

>ggo-mir-30b (-37.40)   [ggo-miR-30b:17-37]

a      uc     caU          U  -A        uaaua 
 ccaagu  caguu   GUAAACAUCC AC  CUCAGCug     c
 ||||||  |||||   |||||||||| ||  ||||||||      
 gguuca  gucga   cauuuguagg ug  gggucggu     a
a      --     cuu          -  ga        uaggu 

>lla-mir-30b (-38.20)   [lla-miR-30b:17-37]

a     uu      caU          U  -A        uaaua 
 ccgag  ucaguu   GUAAACAUCC AC  CUCAGCug     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   cauuuguagg ug  gagucggu     a
a     --      cuu          -  ga        uaggu 

>mne-mir-30b (-37.60)   [mne-miR-30b:17-37]

a     uu      caU          U  -A        uaaua 
 ccaag  ucaguu   GUAAACAUCC AC  CUCAGCug     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   cauuuguagg ug  gggucggu     a
a     --      cuu          -  ga        uaggu 

>age-mir-30b (-38.20)   [age-miR-30b:17-37]

a     uu      caU          U  -A        uaaua 
 ccgag  ucaguu   GUAAACAUCC AC  CUCAGCug     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   cauuuguagg ug  gagucggu     a
a     --      cuu          -  ga        uaggu 

>ppa-mir-30b (-37.60)   [ppa-miR-30b:17-37]

a     uu      caU          U  -A        uaaua 
 ccaag  ucaguu   GUAAACAUCC AC  CUCAGCug     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   cauuuguagg ug  gggucggu     a
a     --      cuu          -  ga        uaggu 

>ggo-mir-125b-1 (-43.40)   [ggo-miR-125b:15-36]

u    uc   u   UC  UG   C           Au     c 
 gcgc  cuc cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  ||| |||  ||  ||| |||||||||||  ||||| g
 cgug  gag guc  gg  ucu ggauugggcac  uaaau u
u    cu   c   ga  gu   c           -c     u 

>age-mir-125b-1 (-43.40)   [age-miR-125b:15-36]

u    uc   u   UC  UG   C           Au     c 
 gcgc  cuc cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  ||| |||  ||  ||| |||||||||||  ||||| g
 cgug  gag guc  gg  ucu ggauugggcac  uaaau u
u    cu   c   ga  gu   c           -c     u 

>ppa-mir-125b (-38.60)   [ppa-miR-125b:15-36]

--    cuc   u   UC  UG   C           Aug    c 
  ugcg   cuc cag  CC  AGA CCUAACUUGUG   uuaa c
  ||||   ||| |||  ||  ||| |||||||||||   ||||  
  augc   gag guc  gg  ucu ggauugggcac   aauu g
ua    --u   c   ga  gu   c           cua    u 

>ppy-mir-125b-1 (-43.40)   [ppy-miR-125b:15-36]

u    uc   u   UC  UG   C           Au     c 
 gcgc  cuc cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  ||| |||  ||  ||| |||||||||||  ||||| g
 cgug  gag guc  gg  ucu ggauugggcac  uaaau u
u    cu   c   ga  gu   c           -c     u 

>ptr-mir-125b-1 (-43.40)   [ptr-miR-125b:15-36]

u    uc   u   UC  UG   C           Au     c 
 gcgc  cuc cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  ||| |||  ||  ||| |||||||||||  ||||| g
 cgug  gag guc  gg  ucu ggauugggcac  uaaau u
u    cu   c   ga  gu   c           -c     u 

>mml-mir-125b-1 (-43.40)   [mml-miR-125b:15-36]

u    uc   u   UC  UG   C           Au     c 
 gcgc  cuc cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  ||| |||  ||  ||| |||||||||||  ||||| g
 cgug  gag guc  gg  ucu ggauugggcac  uaaau u
u    cu   c   ga  gu   c           -c     u 

>sla-mir-125b (-43.40)   [sla-miR-125b:15-36]

u    uc   u   UC  UG   C           Au     c 
 gcgc  cuc cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  ||| |||  ||  ||| |||||||||||  ||||| g
 cgug  gag guc  gg  ucu ggauugggcac  uaaau u
u    cu   c   ga  gu   c           -c     u 

>lla-mir-125b-1 (-43.40)   [lla-miR-125b:15-36]

u    uc   u   UC  UG   C           Au     c 
 gcgc  cuc cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  ||| |||  ||  ||| |||||||||||  ||||| g
 cgug  gag guc  gg  ucu ggauugggcac  uaaau u
u    cu   c   ga  gu   c           -c     u 

>mne-mir-125b-1 (-43.40)   [mne-miR-125b:15-36]

u    uc   u   UC  UG   C           Au     c 
 gcgc  cuc cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  ||| |||  ||  ||| |||||||||||  ||||| g
 cgug  gag guc  gg  ucu ggauugggcac  uaaau u
u    cu   c   ga  gu   c           -c     u 

>mml-mir-128a (-35.90)   [mml-miR-128a:50-71]

u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuU   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 

>ptr-mir-128-1 (-35.90)   [ptr-miR-128:50-70]

u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 

>ppy-mir-128 (-35.90)   [ppy-miR-128:50-70]

u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 

>sla-mir-128 (-35.90)   [sla-miR-128:50-71]

u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuU   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 

>age-mir-128 (-35.90)   [age-miR-128:50-71]

u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuU   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 

>ppa-mir-128 (-35.90)   [ppa-miR-128:50-71]

u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuU   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 

>mml-mir-130a (-34.40)   [mml-miR-130a:55-74]

ugcugcu      a        c      ug  a   ucu  a 
       ggccag gcucuuuu acauug  cu cug   gc c
       |||||| |||||||| ||||||  || |||   ||  
       ccgguu CGGGAAAA UGUAAC  GA gau   ug c
-------      a        U      GU  C   cac  u 

>ggo-mir-130a (-42.60)   [ggo-miR-130a:55-74]

u     -       a        c      ug  a   ucu  a 
 gcugc uggccag gcucuuuu acauug  cu cug   gc c
 ||||| ||||||| |||||||| ||||||  || |||   ||  
 ugaug gccgguu CGGGAAAA UGUAAC  GA gau   ug c
g     u       a        U      GU  C   cac  u 

>mne-mir-130a (-42.60)   [mne-miR-130a:55-74]

u     -       a        c      ug  a   ucu  a 
 gcugc uggccag gcucuuuu acauug  cu cug   gc c
 ||||| ||||||| |||||||| ||||||  || |||   ||  
 ugaug gccgguu CGGGAAAA UGUAAC  GA gau   ug c
g     u       a        U      GU  C   cac  u 

>ppa-mir-130a (-42.60)   [ppa-miR-130a:55-74]

u     -       a        c      ug  a   ucu  a 
 gcugc uggccag gcucuuuu acauug  cu cug   gc c
 ||||| ||||||| |||||||| ||||||  || |||   ||  
 ugaug gccgguu CGGGAAAA UGUAAC  GA gau   ug c
g     u       a        U      GU  C   cac  u 

>ggo-mir-133a (-40.50)   [ggo-miR-133a:54-75]

a      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

>age-mir-133a (-40.50)   [age-miR-133a:54-75]

a      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

>ppa-mir-133a (-40.50)   [ppa-miR-133a:54-75]

a      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

>ppy-mir-133a (-33.90)   [ppy-miR-133a:54-74]

a      uuu    g       -aaaau   ac      gccuc 
 caaugc   gcua agcuggu      gga  caaauc     u
 ||||||   |||| |||||||      |||  ||||||      
 guuacg   cgaU UCGACCA      CCU  GUUuag     u
a      uau    G       ACUUCC   --      guaac 

>ptr-mir-133a-1 (-40.50)   [ptr-miR-133a:53-74]

a      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 

>mml-mir-133a (-33.90)   [mml-miR-133a:54-74]

a      uuu    g       -aaaau   ac      gccuc 
 caaugc   gcua agcuggu      gga  caaauc     u
 ||||||   |||| |||||||      |||  ||||||      
 guuacg   cgaU UCGACCA      CCU  GUUuag     u
a      uau    G       ACUUCC   --      guaac 

>sla-mir-133a (-40.50)   [sla-miR-133a:54-75]

a      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

>lla-mir-133a (-40.50)   [lla-miR-133a:54-75]

a      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

>mne-mir-133a (-40.50)   [mne-miR-133a:54-75]

a      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

>lla-mir-135-1 (-44.72)   [lla-miR-135:17-39]

a g         u u          UU            uucua 
 g ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
 | ||||||||| | ||||||||||  ||||||||||||     u
 c ggggcggca g ggugccgagg  uagggauauacu     g
a a         c c          -u            cacuc 

>age-mir-135-1 (-44.72)   [age-miR-135:17-39]

a g         u u          UU            uucua 
 g ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
 | ||||||||| | ||||||||||  ||||||||||||     u
 c ggggcggca g ggugccgagg  uagggauauacu     g
a a         c c          -u            cacuc 

>ppa-mir-135-1 (-44.72)   [ppa-miR-135:17-39]

a g         u u          UU            uucua 
 g ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
 | ||||||||| | ||||||||||  ||||||||||||     u
 c ggggcggca g ggugccgagg  uagggauauacu     g
g a         c c          -u            cacuc 

>mml-mir-135a-2 (-35.10)   [mml-miR-135a:23-45]

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 

>ptr-mir-135a-2 (-35.10)   [ptr-miR-135a:23-45]

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 

>ggo-mir-135 (-35.10)   [ggo-miR-135:23-45]

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 

>ppy-mir-135 (-35.10)   [ppy-miR-135:23-45]

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 

>lla-mir-135-2 (-28.10)   [lla-miR-135:23-45]

-agauaaauucacucua    uuU         U            u g a 
                 gugc   AUGGCUUUU AUUCCUAUGUGA a u a
                 ||||   ||||||||| |||||||||||| | | u
                 cacg   uaccgaagg uagggauguacu u a a
acuaaaauguaauacac    ---         -            c g a 

>age-mir-135-2 (-35.10)   [age-miR-135:23-45]

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 

>ppa-mir-135-2 (-35.10)   [ppa-miR-135:23-45]

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 

>ptr-mir-140 (-55.00)   [ptr-miR-140:24-44]

u       ucucu        -  A             A       uu   uc 
 gugucuc     guguccug cc GUGGUUUUACCCU UGGUAGg  acg  a
 |||||||     |||||||| || ||||||||||||| |||||||  |||   
 cacgggg     cauaggac gg caccaagauggga accaucu  ugu  u
c       ----c        a  -             c       --   cg 

>mne-mir-140 (-57.60)   [mne-miR-140:24-44]

u       ucucu        -  A             A       uu   uc 
 gugucuc     guguccug cc GUGGUUCUACCCU UGGUAGg  acg  a
 |||||||     |||||||| || ||||||||||||| |||||||  |||   
 cacgggg     cauaggac gg caccaagauggga accaucu  ugu  u
c       ----c        a  -             c       --   cg 

>ptr-mir-143 (-49.94)   [ptr-miR-143:61-82]

-gc    cgcccug    c ag      g         g      u  -  ag 
   gcag       ucuc c  ccugag ugcagugcu caucuc gg uc  u
   ||||       |||| |  |||||| ||||||||| |||||| || ||   
   cguc       agag g  ggACUC AUGUCACGA GUAGAG cu ag  u
cga    uuuuuga    a aa      G         A      U  g  gg 

>ggo-mir-143 (-51.90)   [ggo-miR-143:61-82]

-gc    c  ccug    c ag      g         g      u  -  ag 
   gcag gc    ucuc c  ccugag ugcagugcu caucuc gg uc  u
   |||| ||    |||| |  |||||| ||||||||| |||||| || ||   
   cguc ug    agag g  ggACUC AUGUCACGA GUAGAG cu ag  u
cga    u  uuga    a aa      G         A      U  g  gg 

>ppy-mir-143 (-51.90)   [ppy-miR-143:61-82]

-gc    c  ccug    c ag      g         g      u  -  ag 
   gcag gc    ucuc c  ccugag ugcagugcu caucuc gg uc  u
   |||| ||    |||| |  |||||| ||||||||| |||||| || ||   
   cguc ug    agag g  ggACUC AUGUCACGA GUAGAG cu ag  u
cga    u  uuga    a aa      G         A      U  g  gg 

>lla-mir-143 (-51.90)   [lla-miR-143:61-82]

-gc    c  ccug    c ag      g         g      u  -  ag 
   gcag gc    ucuc c  ccugag ugcagugcu caucuc gg uc  u
   |||| ||    |||| |  |||||| ||||||||| |||||| || ||   
   cguc ug    agag g  ggACUC AUGUCACGA GUAGAG cu ag  u
cga    u  uuga    a aa      G         A      U  g  gg 

>ppa-mir-143 (-49.94)   [ppa-miR-143:61-82]

-gc    cgcccug    c ag      g         g      u  -  ag 
   gcag       ucuc c  ccugag ugcagugcu caucuc gg uc  u
   ||||       |||| |  |||||| ||||||||| |||||| || ||   
   cguc       agag g  ggACUC AUGUCACGA GUAGAG cu ag  u
cga    uuuuuga    a aa      G         A      U  g  gg 

>ptr-mir-144 (-44.80)   [ptr-miR-144:52-73]

-u   -    u      g        a         -a    gc 
  ggg gccc ggcugg auaucauc uauacugua  guuu  g
  ||| |||| |||||| |||||||| |||||||||  ||||   
  ccc cggg cuGAUC UGUAGUAG AUAUGACAU  caga  a
cu   a    c      A        -         ca    gu 

>ppy-mir-144 (-44.40)   [ppy-miR-144:52-73]

-u   -    u      g        a         -a    gc 
  ggg gccc ggcugg auaucauc uauacugua  guuu  g
  ||| |||| |||||| |||||||| |||||||||  ||||   
  ccc cggg cuGAUC UGUAGUAG AUAUGACAU  caga  a
cc   a    u      A        -         ca    gu 

>mne-mir-144 (-44.40)   [mne-miR-144:52-73]

-u   -    u      g        a         -a    gu 
  ggg gccc ggcugg auaucauc uauacugua  guuu  g
  ||| |||| |||||| |||||||| |||||||||  ||||   
  ccc cggg cuGAUC UGUAGUAG AUAUGACAU  caga  a
cc   a    c      A        -         ca    gu 

>ppa-mir-144 (-38.60)   [ppa-miR-144:52-73]

-u   -    u gc   g        a         -a    gc 
  ggg gccc g  ugg auaucauc uauacugua  guuu  g
  ||| |||| |  ||| |||||||| |||||||||  ||||   
  ccc cggg c  AUC UGUAGUAG AUAUGACAU  caga  a
cu   a    c uC   A        -         ca    gu 

>mml-mir-145 (-41.62)   [mml-miR-145:16-39]

c   u  u     c  UC    U  C            Uaaau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu uc  guca aa gguccuuagggg     u
u   u  u     -  uu    u  a            uagaa 

>ptr-mir-145 (-41.62)   [ptr-miR-145:16-39]

c   u  u     c  UC    U  C            Uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu uc  guca aa gguccuuagggg     u
u   u  u     -  uu    u  a            uagaa 

>ggo-mir-145 (-41.62)   [ggo-miR-145:16-39]

c   u  u     c  UC    U  C            Uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu uc  guca aa gguccuuagggg     u
u   u  u     -  uu    u  a            uagaa 

>ppy-mir-145 (-41.62)   [ppy-miR-145:16-39]

c   u  u     c  UC    U  C            Uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu uc  guca aa gguccuuagggg     u
u   u  u     -  uu    u  a            uagaa 

>mne-mir-145 (-41.62)   [mne-miR-145:16-39]

c   u  u     c  UC    U  C            Uaaau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu uc  guca aa gguccuuagggg     u
u   u  u     -  uu    u  a            uagaa 

>mml-mir-153-1 (-48.10)   [mml-miR-153:54-73]

c     g         -             -c       --   au 
 ucaca cugccagug ucauuuuugugau  ugcagcu  agu  u
 ||||| ||||||||| |||||||||||||  |||||||  |||   
 ggugu gacgguuac AGUGAAAACACUG  ACGUUga  uca  c
c     g         u             AU       cc   cu 

>ppy-mir-153 (-48.10)   [ppy-miR-153:54-75]

c     g         -             -c       --   au 
 ucaca cugccagug ucauuuuugugau  ugcagcu  agu  u
 ||||| ||||||||| |||||||||||||  |||||||  |||   
 ggugu gacgguuaC AGUGAAAACACUG  ACGUUga  uca  c
c     g         U             AU       cc   cu 

>mne-mir-153-1 (-48.10)   [mne-miR-153:54-73]

c     g         -             -c       --   au 
 ucaca cugccagug ucauuuuugugau  ugcagcu  agu  u
 ||||| ||||||||| |||||||||||||  |||||||  |||   
 ggugu gacgguuac AGUGAAAACACUG  ACGUUga  uca  c
c     g         u             AU       cc   cu 

>mml-mir-153-2 (-41.30)   [mml-miR-153:53-72]

a     gg      -             gu       -a  aa 
 gcggu  ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuac AGUGAAAACACUG  ACGUUga  cg  u
g     aa      u             AU       cc  ag 

>ggo-mir-153 (-41.30)   [ggo-miR-153:53-72]

a     gg      -             gu       -a  aa 
 gcggu  ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuac AGUGAAAACACUG  ACGUUga  cg  u
g     aa      u             AU       cc  ag 

>mne-mir-153-2 (-41.30)   [mne-miR-153:53-72]

a     gg      -             gu       -a  aa 
 gcggu  ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuac AGUGAAAACACUG  ACGUUga  cg  u
g     aa      u             AU       cc  ag 

>ptr-mir-9-2 (-40.10)   [ptr-miR-9:16-38]

g    c     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aau  aagccaauagaucga auacuu  g u
a    -     a   ga               a      cu g 

>ggo-mir-9 (-40.10)   [ggo-miR-9:16-38]

g    c     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aau  aagccaauagaucga auacuu  g u
a    -     a   ga               a      cu g 

>lla-mir-9 (-40.10)   [lla-miR-9:16-38]

g    c     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aau  aagccaauagaucga auacuu  g u
a    -     a   ga               a      cu g 

>mne-mir-9 (-40.10)   [mne-miR-9:16-38]

g    c     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aau  aagccaauagaucga auacuu  g u
a    -     a   ga               a      cu g 

>age-mir-9 (-40.10)   [age-miR-9:16-38]

g    c     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aau  aagccaauagaucga auacuu  g u
a    -     a   ga               a      cu g 

>ggo-mir-125b-2 (-40.60)   [ggo-miR-125b:17-38]

a  aga   uu     UC  UG   C   A        -gg   u 
 cc   cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
 ||   |||  |||||  ||  ||| ||| ||||||||   |||  
 gg   gag  ggauc  gg  ucu gga ugaacacu   aug u
a  --g   gc     ca  gu   c   c        aca   a 

>age-mir-125b-2 (-40.60)   [age-miR-125b:17-38]

a  aga   uu     UC  UG   C   A        -gg   u 
 cc   cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
 ||   |||  |||||  ||  ||| ||| ||||||||   |||  
 gg   gag  ggauc  gg  ucu gga ugaacacu   aug u
a  --g   gc     ca  gu   c   c        aca   a 

>lca-mir-125b (-40.60)   [lca-miR-125b:17-38]

a  aga   uu     UC  UG   C   A        -gg   u 
 cc   cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
 ||   |||  |||||  ||  ||| ||| ||||||||   |||  
 gg   gag  ggauc  gg  ucu gga ugaacacu   aug u
a  --g   gc     ca  gu   c   c        aca   a 

>ppy-mir-125b-2 (-40.60)   [ppy-miR-125b:17-38]

a  aga   uu     UC  UG   C   A        -gg   u 
 cc   cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
 ||   |||  |||||  ||  ||| ||| ||||||||   |||  
 gg   gag  ggauc  gg  ucu gga ugaacacu   aug u
a  --g   gc     ca  gu   c   c        aca   a 

>ptr-mir-125b-2 (-40.60)   [ptr-miR-125b:17-38]

a  aga   uu     UC  UG   C   A        -gg   u 
 cc   cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
 ||   |||  |||||  ||  ||| ||| ||||||||   |||  
 gg   gag  ggauc  gg  ucu gga ugaacacu   aug u
a  --g   gc     ca  gu   c   c        aca   a 

>mml-mir-125b-2 (-40.60)   [mml-miR-125b:17-38]

a  aga   uu     UC  UG   C   A        -gg   u 
 cc   cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
 ||   |||  |||||  ||  ||| ||| ||||||||   |||  
 gg   gag  ggauc  gg  ucu gga ugaacacu   aug u
a  --g   gc     ca  gu   c   c        aca   a 

>lla-mir-125b-2 (-40.60)   [lla-miR-125b:17-38]

a  aga   uu     UC  UG   C   A        -gg   u 
 cc   cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
 ||   |||  |||||  ||  ||| ||| ||||||||   |||  
 gg   gag  ggauc  gg  ucu gga ugaacacu   aug u
a  --g   gc     ca  gu   c   c        aca   a 

>mne-mir-125b-2 (-40.60)   [mne-miR-125b:17-38]

a  aga   uu     UC  UG   C   A        -gg   u 
 cc   cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
 ||   |||  |||||  ||  ||| ||| ||||||||   |||  
 gg   gag  ggauc  gg  ucu gga ugaacacu   aug u
a  --g   gc     ca  gu   c   c        aca   a 

>mml-mir-127 (-39.80)   [mml-miR-127:57-78]

-----ugu   ca   ucu      ugcug         g  c      --  a 
        gau  cug   ccagcc     aagcucaga gg ucugau  uc g
        |||  |||   ||||||     ||||||||| || ||||||  || a
        cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacuccu   aa   --u      -----         G  U      cu  a 

>ptr-mir-127 (-41.10)   [ptr-miR-127:57-78]

-----  u   ca   ucu      ugcug         g  c      --  a 
     ug gau  cug   ccagcc     aagcucaga gg ucugau  uc g
     || |||  |||   ||||||     ||||||||| || ||||||  || a
     ac cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacu  u   aa   --u      -----         G  U      cu  a 

>ppy-mir-127 (-41.10)   [ppy-miR-127:57-78]

-----  u   ca   ucu      ugcug         g  c      --  a 
     ug gau  cug   ccagcc     aagcucaga gg ucugau  uc g
     || |||  |||   ||||||     ||||||||| || ||||||  || a
     ac cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacu  u   aa   --u      -----         G  U      cu  a 

>sla-mir-127 (-41.10)   [sla-miR-127:57-78]

-----  u   ca   ucu      ugcug         g  c      --  a 
     ug gau  cug   ccagcc     aagcucaga gg ucugau  uc g
     || |||  |||   ||||||     ||||||||| || ||||||  || a
     ac cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacu  u   aa   --u      -----         G  U      cu  a 

>lla-mir-127 (-41.10)   [lla-miR-127:57-78]

-----  u   ca   ucu      ugcug         g  c      --  a 
     ug gau  cug   ccagcc     aagcucaga gg ucugau  uc g
     || |||  |||   ||||||     ||||||||| || ||||||  || a
     ac cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacu  u   aa   --u      -----         G  U      cu  a 

>mne-mir-127 (-39.80)   [mne-miR-127:57-78]

-----ugu   ca   ucu      ugcug         g  c      --  a 
        gau  cug   ccagcc     aagcucaga gg ucugau  uc g
        |||  |||   ||||||     ||||||||| || ||||||  || a
        cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacuccu   aa   --u      -----         G  U      cu  a 

>age-mir-127 (-41.10)   [age-miR-127:57-78]

-----  u   ca   ucu      ugcug         g  c      --  a 
     ug gau  cug   ccagcc     aagcucaga gg ucugau  uc g
     || |||  |||   ||||||     ||||||||| || ||||||  || a
     ac cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacu  u   aa   --u      -----         G  U      cu  a 

>ggo-mir-134 (-35.10)   [ggo-miR-134:8-28]

u     gU        U  -A   G    ---    g 
 agggu  GUGACUGG UG  CCA AGGG   gcau c
 |||||  |||||||| ||  ||| ||||   |||| a
 uccca  cacugauc ac  ggu uccc   ugug c
c     ac        c  cg   g    acu    u 

>ppy-mir-134 (-35.20)   [ppy-miR-134:8-28]

c     gU        U  -A   G    ---    g 
 agggu  GUGACUGG UG  CCA AGGG   gcau c
 |||||  |||||||| ||  ||| ||||   |||| a
 uccca  cacugauc ac  ggu uccc   ugug c
c     ac        c  cg   g    acu    u 

>mne-mir-134 (-35.20)   [mne-miR-134:8-28]

c     gU        U  -A   G    ---    g 
 agggu  GUGACUGG UG  CCA AGGG   gcau c
 |||||  |||||||| ||  ||| ||||   |||| a
 uccca  cacugauc ac  ggu uccc   ugug c
c     ac        c  cg   g    acu    u 

>ppa-mir-134 (-35.20)   [ppa-miR-134:8-28]

c     gU        U  -A   G    ---    g 
 agggu  GUGACUGG UG  CCA AGGG   gcau c
 |||||  |||||||| ||  ||| ||||   |||| a
 uccca  cacugauc ac  ggu uccc   ugug c
c     ac        c  cg   g    acu    u 

>ptr-mir-136 (-45.80)   [ptr-miR-136:15-37]

u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuucugag uaaac   gcuacuaccu   a
u        a        -     ucu          cgu 

>ggo-mir-136 (-45.80)   [ggo-miR-136:15-37]

u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuucugag uaaac   gcuacuaccu   a
u        a        -     ucu          cgu 

>ppy-mir-136 (-45.80)   [ppy-miR-136:15-37]

u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuucugag uaaac   gcuacuaccu   a
u        a        -     ucu          cgu 

>ppa-mir-136 (-45.80)   [ppa-miR-136:15-37]

u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuucugag uaaac   gcuacuaccu   a
u        a        -     ucu          cgu 

>ptr-mir-154 (-37.50)   [ptr-miR-154:15-36]

g       u            U      UGCC    - uuu 
 ugguacu gaagaUAGGUUA CCGUGU    UUCG c   a
 ||||||| |||||||||||| ||||||    |||| |   u
 accauga uuuuuauccagu ggcaca    aagc g   u
a       c            u      uacu    a ugu 

>ggo-mir-154 (-37.50)   [ggo-miR-154:15-36]

g       u            U      UGCC    - uuu 
 ugguacu gaagaUAGGUUA CCGUGU    UUCG c   a
 ||||||| |||||||||||| ||||||    |||| |   u
 accauga uuuuuauccagu ggcaca    aagc g   u
a       c            u      uacu    a ugu 

>ppy-mir-154 (-37.50)   [ppy-miR-154:15-36]

g       u            U      UGCC    - uuu 
 ugguacu gaagaUAGGUUA CCGUGU    UUCG c   a
 ||||||| |||||||||||| ||||||    |||| |   u
 accauga uuuuuauccagu ggcaca    aagc g   u
a       c            u      uacu    a ugu 

>mne-mir-154 (-36.80)   [mne-miR-154:15-36]

ga      u            U      UGCC    - uuu 
  gguacu gaagaUAGGUUA CCGUGU    UUCG c   a
  |||||| |||||||||||| ||||||    |||| |   u
  ccauga uuuuuauccagu ggcaca    aagc g   u
aa      c            u      uacu    a ugu 

>ppa-mir-154 (-37.50)   [ppa-miR-154:15-36]

g       u            U      UGCC    - uuu 
 ugguacu gaagaUAGGUUA CCGUGU    UUCG c   a
 ||||||| |||||||||||| ||||||    |||| |   u
 accauga uuuuuauccagu ggcaca    aagc g   u
a       c            u      uacu    a ugu 

>ptr-mir-184 (-37.90)   [ptr-miR-184:53-74]

c       g c         c      a c     -    ug 
 cagucac u cccuuauca uuuucc g ccagc uuug  a
 ||||||| | ||||||||| |||||| | ||||| ||||   
 guuagug a GGGAAUAGU AAGAGG C GGUug gaau  c
a       g U         C      - A     u    gu 

>ppy-mir-184 (-37.90)   [ppy-miR-184:53-74]

c       g c         c      a c     -    ug 
 cagucac u cccuuauca uuuucc g ccagc uuug  a
 ||||||| | ||||||||| |||||| | ||||| ||||   
 guuagug a GGGAAUAGU AAGAGG C GGUug gaau  c
a       g U         C      - A     u    gu 

>mne-mir-184 (-40.20)   [mne-miR-184:53-74]

        g c         c      a c     -     g 
ucagucac u cccuuauca uuuucc g ccagc uuuau a
|||||||| | ||||||||| |||||| | ||||| |||||  
aguuagug a GGGAAUAGU AAGAGG C GGUug gaaug c
        g U         C      - A     u     u 

>ptr-mir-186 (-41.24)   [ptr-miR-186:15-37]

u     u                 U     U      ucuggu 
 gcuug aacuuucCAAAGAAUUC CCUUU GGGCUU      u
 ||||| ||||||||||||||||| ||||| ||||||       
 cgagu uugaaggguuuuuuaag ggaaa cccgaa      u
u     -                 u     -      uuuuau 

>ggo-mir-186 (-41.24)   [ggo-miR-186:15-37]

u     u                 U     U      ucuggu 
 gcuug aacuuucCAAAGAAUUC CCUUU GGGCUU      u
 ||||| ||||||||||||||||| ||||| ||||||       
 cgagu uugaaggguuuuuuaag ggaaa cccgaa      u
u     -                 u     -      uuuuau 

>ppa-mir-186 (-41.24)   [ppa-miR-186:15-37]

u     u                 U     U      ucuggu 
 gcuug aacuuucCAAAGAAUUC CCUUU GGGCUU      u
 ||||| ||||||||||||||||| ||||| ||||||       
 cgagu uugaaggguuuuuuaag ggaaa cccgaa      u
u     -                 u     -      uuuuau 

>mml-mir-188 (-39.80)   [mml-miR-188:15-36]

u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  gu  gggacguac  ccuccc     g a
c    u  -u   ac  uu         ac      caaaa u 

>ptr-mir-188 (-39.19)   [ptr-miR-188:15-36]

u    -  uc   ca  UC         GU      Ugaacuu 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG       u
 |||| ||  |||  ||  |||||||||  ||||||        
 cgag gg  agg  gu  gggacguac  ccuccc       c
c    c  -u   ac  uu         ac      caaaagu 

>ppy-mir-188 (-39.80)   [ppy-miR-188:15-36]

u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  gu  gggacguac  ccuccc     g c
c    c  -u   ac  uu         ac      caaaa u 

>mne-mir-188 (-39.80)   [mne-miR-188:15-36]

u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  gu  gggacguac  ccuccc     g a
c    u  -u   ac  uu         ac      caaaa u 

>ppa-mir-188 (-39.80)   [ppa-miR-188:15-36]

u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  gu  gggacguac  ccuccc     g c
c    c  -u   ac  uu         ac      caaaa u 

>mml-mir-190a (-32.50)   [mml-miR-190a:15-36]

u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cguuc g gaca c  uauacaaacuauaua  ucaac    u
c     u u    u cu               --     cuaa 

>ptr-mir-190a (-32.50)   [ptr-miR-190a:15-36]

u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cguuc g gaca c  uauacaaacuauaua  ucaac    u
c     u u    u cu               --     cuaa 

>ggo-mir-190 (-32.50)   [ggo-miR-190:15-36]

u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cguuc g gaca c  uauacaaacuauaua  ucaac    u
c     u u    u cu               --     cuaa 

>ppa-mir-190 (-32.50)   [ppa-miR-190:15-36]

u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cguuc g gaca c  uauacaaacuauaua  ucaac    u
c     u u    u cu               --     cuaa 

>ggo-mir-195 (-39.94)   [ggo-miR-195:15-35]

a   u   g g  cU          -A          caggga 
 gcu ccu g cu  AGCAGCACAG  AAUAUUGGCa      a
 ||| ||| | ||  ||||||||||  ||||||||||       
 ugg ggg c ga  ucgucguguc  uuauaaccgu      g
g   u   a g  cc          gg          cugagc 

>ppa-mir-195 (-46.44)   [ppa-miR-195:15-35]

a   u     g  cU          -A          caggga 
 gcu cccug cu  AGCAGCACAG  AAUAUUGGCa      a
 ||| ||||| ||  ||||||||||  ||||||||||       
 ugg gggac ga  ucgucguguc  uuauaaccgu      g
g   u     g  cc          gg          cugagc 

>ppy-mir-206 (-43.90)   [ppy-miR-206:53-74]

u    c                        cc     u g uu 
 gcuu ccgaggccacaugcuucuuuauau  ccaua g a  a
 |||| ||||||||||||||||||||||||  ||||| | |   
 ugaa ggcuuuGGUGUGUGAAGGAAUGUA  GGUau c u  c
g    c                        -A     - g uu 

>mne-mir-206 (-43.90)   [mne-miR-206:53-74]

u    c                        cc     u g uu 
 gcuu ccgaggccacaugcuucuuuauau  ccaua g a  a
 |||| ||||||||||||||||||||||||  ||||| | |   
 ugaa ggcuuuGGUGUGUGAAGGAAUGUA  GGUau c u  c
g    c                        -A     - g uu 

>mml-mir-21 (-35.80)   [mml-miR-21:8-29]

u     gU        A     A     A    u a 
 gucgg  AGCUUAUC GACUG UGUUG cugu g a
 |||||  |||||||| ||||| ||||| |||| | u
 caguc  ucggguag cugac acaac ggua c c
a     ug        -     c     -    - u 

>ptr-mir-21 (-35.80)   [ptr-miR-21:8-29]

u     gU        A     A     A    u a 
 gucgg  AGCUUAUC GACUG UGUUG cugu g a
 |||||  |||||||| ||||| ||||| |||| | u
 caguc  ucggguag cugac acaac ggua c c
a     ug        -     c     -    - u 

>ggo-mir-21 (-35.80)   [ggo-miR-21:8-29]

u     gU        A     A     A    u a 
 gucgg  AGCUUAUC GACUG UGUUG cugu g a
 |||||  |||||||| ||||| ||||| |||| | u
 caguc  ucggguag cugac acaac ggua c c
a     ug        -     c     -    - u 

>ppy-mir-21 (-35.80)   [ppy-miR-21:8-29]

u     gU        A     A     A    u a 
 gucgg  AGCUUAUC GACUG UGUUG cugu g a
 |||||  |||||||| ||||| ||||| |||| | u
 caguc  ucggguag cugac acaac ggua c c
a     ug        -     c     -    - u 

>mne-mir-21 (-35.80)   [mne-miR-21:8-29]

u     gU        A     A     A    u a 
 gucgg  AGCUUAUC GACUG UGUUG cugu g a
 |||||  |||||||| ||||| ||||| |||| | u
 caguc  ucggguag cugac acaac ggua c c
a     ug        -     c     -    - u 

>age-mir-21 (-35.80)   [age-miR-21:8-29]

u     gU        A     A     A    u a 
 gucgg  AGCUUAUC GACUG UGUUG cugu g a
 |||||  |||||||| ||||| ||||| |||| | u
 caguc  ucggguag cugac acaac ggua c c
a     ug        -     c     -    - u 

>ppa-mir-21 (-35.80)   [ppa-miR-21:8-29]

u     gU        A     A     A    u a 
 gucgg  AGCUUAUC GACUG UGUUG cugu g a
 |||||  |||||||| ||||| ||||| |||| | u
 caguc  ucggguag cugac acaac ggua c c
a     ug        -     c     -    - u 

>age-mir-22 (-39.80)   [age-miR-22:53-74]

   u   cc               -     a      u  ccu 
ggc gag  gcaguaguucuucag uggca gcuuua gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

>ppa-mir-22 (-39.80)   [ppa-miR-22:53-74]

   u   cc               -     a      u  ccu 
ggc gag  gcaguaguucuucag uggca gcuuua gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

>lca-mir-22 (-39.80)   [lca-miR-22:53-74]

   u   cc               -     a      u  ccu 
ggc gag  gcaguaguucuucag uggca gcuuua gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

>mml-mir-22 (-39.80)   [mml-miR-22:53-74]

   u   cc               -     a      u  ccu 
ggc gag  gcaguaguucuucag uggca gcuuua gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

>ppy-mir-22 (-39.80)   [ppy-miR-22:53-74]

   u   cc               -     a      u  ccu 
ggc gag  gcaguaguucuucag uggca gcuuua gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

>ptr-mir-22 (-39.80)   [ptr-miR-22:53-74]

   u   cc               -     a      u  ccu 
ggc gag  gcaguaguucuucag uggca gcuuua gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

>sla-mir-22 (-39.70)   [sla-miR-22:53-74]

   u   cc               -     a      u  ccu 
ggc gag  gcaguaguucuucag uggca gcuuua gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  ccc 

>lla-mir-22 (-39.80)   [lla-miR-22:53-74]

   u   cc               -     a      u  ccu 
ggc gag  gcaguaguucuucag uggca gcuuua gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

>mne-mir-22 (-39.80)   [mne-miR-22:53-74]

   u   cc               -     a      u  ccu 
ggc gag  gcaguaguucuucag uggca gcuuua gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

>mml-mir-24-1 (-26.32)   [mml-miR-24*:6-28] [mml-miR-24:44-65]

    g  G   A         UA     ucuca 
cucc GU CCU CUGAGCUGA  UCAGU     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacau 

>ppy-mir-24-1 (-26.32)   [ppy-miR-24*:6-28] [ppy-miR-24:44-65]

    g  G   A         UA     ucuca 
cucc GU CCU CUGAGCUGA  UCAGU     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacau 

>mne-mir-24-1 (-26.32)   [mne-miR-24*:6-28] [mne-miR-24:44-65]

    g  G   A         UA     ucuca 
cucc GU CCU CUGAGCUGA  UCAGU     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacau 

>ppa-mir-24-1 (-26.32)   [ppa-miR-24*:6-28] [ppa-miR-24:44-65]

    g  G   A         UA     ucuca 
cucc GU CCU CUGAGCUGA  UCAGU     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacau 

>ptr-mir-26a-1 (-37.30)   [ptr-miR-26a:10-31]

   g      U         C          --g  ca 
gug ccucgU CAAGUAAUC AGGAUAGGCU   ug  g
||| |||||| ||||||||| ||||||||||   ||  g
cgc ggggca guucauugg ucuuauccgg   ac  u
   a      c         u          gua  cc 

>ggo-mir-26a (-37.30)   [ggo-miR-26a:10-31]

   g      U         C          --g  ca 
gug ccucgU CAAGUAAUC AGGAUAGGCU   ug  g
||| |||||| ||||||||| ||||||||||   ||  g
cgc ggggca guucauugg ucuuauccgg   ac  u
   a      c         u          gua  cc 

>ppy-mir-26a (-37.30)   [ppy-miR-26a:10-31]

   g      U         C          --g  ca 
gug ccucgU CAAGUAAUC AGGAUAGGCU   ug  g
||| |||||| ||||||||| ||||||||||   ||  g
cgc ggggca guucauugg ucuuauccgg   ac  u
   a      c         u          gua  cc 

>lla-mir-26a (-37.30)   [lla-miR-26a:10-31]

   g      U         C          --g  ca 
gug ccucgU CAAGUAAUC AGGAUAGGCU   ug  g
||| |||||| ||||||||| ||||||||||   ||  g
cgc ggggca guucauugg ucuuauccgg   ac  u
   a      c         u          gua  cc 

>mne-mir-26a (-37.90)   [mne-miR-26a:10-31]

   g      U         C          --g  ca 
gug ccucgU CAAGUAAUC AGGAUAGGCU   ug  g
||| |||||| ||||||||| ||||||||||   ||  g
cgc ggggca guucauuag ucuuauccgg   ac  u
   a      c         u          gua  cc 

>mml-mir-26a-1 (-37.30)   [mml-miR-26a:10-31]

   g      U         C          --g  ca 
gug ccucgU CAAGUAAUC AGGAUAGGCU   ug  g
||| |||||| ||||||||| ||||||||||   ||  g
cgc ggggca guucauugg ucuuauccgg   ac  u
   a      c         u          gua  cc 

>ppa-mir-26a (-37.30)   [ppa-miR-26a:10-31]

   g      U         C          --g  ca 
gug ccucgU CAAGUAAUC AGGAUAGGCU   ug  g
||| |||||| ||||||||| ||||||||||   ||  g
cgc ggggca guucauugg ucuuauccgg   ac  u
   a      c         u          gua  cc 

>age-mir-28 (-49.90)   [age-miR-28:14-35]

   c         A                U  ----    gcc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuu   u
||| ||||||||| |||||||||||||||| ||    ||||    
uca ggacgggag uccucgaguguuagau ac    ucag   u
   c         g                c  ccuu    ucu 

>mml-mir-28 (-50.00)   [mml-miR-28:14-35]

   c         A                U  ----    ucc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuu   u
||| ||||||||| |||||||||||||||| ||    ||||    
uca ggacgggag uccucgaguguuagau ac    ucag   u
   c         g                c  ccuu    ugu 

>ptr-mir-28 (-50.60)   [ptr-miR-28:14-35]

   c         A                U  ----     cc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuua  u
||| ||||||||| |||||||||||||||| ||    |||||   
uca ggacgggag uccucgaguguuagau ac    ucagu  u
   c         g                c  ccuu     cu 

>ggo-mir-28 (-50.60)   [ggo-miR-28:14-35]

   c         A                U  ----     cc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuua  u
||| ||||||||| |||||||||||||||| ||    |||||   
uca ggacgggag uccucgaguguuagau ac    ucagu  u
   c         g                c  ccuu     cu 

>ppy-mir-28 (-48.30)   [ppy-miR-28:14-35]

   c         A                U  ----     cc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuua  u
||| ||||||||| |||||||||||||||| ||    |||||   
uca ggacgggag uccucgaguguuagau ac    uuagu  u
   c         g                c  ccuu     cu 

>mne-mir-28 (-50.00)   [mne-miR-28:14-35]

   c         A                U  ----    ucc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuu   u
||| ||||||||| |||||||||||||||| ||    ||||    
uca ggacgggag uccucgaguguuagau ac    ucag   u
   c         g                c  ccuu    ucu 

>sla-mir-28 (-44.00)   [sla-miR-28:14-35]

   c         A       C        U  ----     cc 
ggu cuugcccuc AGGAGCU ACAGUCUA UG    AGuug  u
||| ||||||||| ||||||| |||||||| ||    |||||   
uca ggacgggag uccucga uguuagau ac    ucaau  u
   c         g       a        c  ccuu     cu 

>lla-mir-28 (-49.90)   [lla-miR-28:14-35]

   c         A                U  ----    gcc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuu   u
||| ||||||||| |||||||||||||||| ||    ||||    
uca ggacgggag uccucgaguguuagau ac    ucag   u
   c         g                c  ccuu    ucu 

>ppa-mir-28 (-50.60)   [ppa-miR-28:14-35]

   c         A                U  ----     cc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuua  u
||| ||||||||| |||||||||||||||| ||    |||||   
uca ggacgggag uccucgaguguuagau ac    ucagu  u
   c         g                c  ccuu     cu 

>ggo-mir-29a (-24.90)   [ggo-miR-29a:41-62]

            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 

>age-mir-29a (-24.90)   [age-miR-29a:41-62]

            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 

>ppa-mir-29a (-24.90)   [ppa-miR-29a:41-62]

            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 

>ppy-mir-29a (-24.90)   [ppy-miR-29a:41-62]

            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 

>ptr-mir-29a (-24.90)   [ptr-miR-29a:41-62]

            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 

>mml-mir-29a (-24.90)   [mml-miR-29a:41-62]

            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 

>sla-mir-29a (-24.90)   [sla-miR-29a:41-62]

            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 

>lla-mir-29a (-24.90)   [lla-miR-29a:41-62]

            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 

>mne-mir-29a (-24.90)   [mne-miR-29a:41-62]

            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 

>mml-mir-30a (-36.00)   [mml-miR-30a-5p:6-27] [mml-miR-30a-3p:47-68]

   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     uac g
   C            --           guaga   c 

>ptr-mir-30a (-37.30)   [ptr-miR-30a-5p:6-27] [ptr-miR-30a-3p:47-68]

   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaga   c 

>ggo-mir-30a (-37.30)   [ggo-miR-30a-5p:6-27] [ggo-miR-30a-3p:47-68]

   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaga   c 

>ppy-mir-30a (-37.30)   [ppy-miR-30a-5p:6-27] [ppy-miR-30a-3p:47-68]

   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaga   c 

>ppa-mir-30a (-37.30)   [ppa-miR-30a-5p:6-27] [ppa-miR-30a-3p:47-68]

   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaga   c 

>mml-mir-31 (-36.00)   [mml-miR-31:9-29]

      ga     G   C         -U   gaa 
ggagag  GGCAA AUG UGGCAUAGC  Guu   c
||||||  ||||| ||| |||||||||  |||    
ccuuuc  ccguu uac accguaucg  caa   u
      ua     a   a         uc   ggg 

>ptr-mir-31 (-36.00)   [ptr-miR-31:9-29]

      ga     G   C         -U   gaa 
ggagag  GGCAA AUG UGGCAUAGC  Guu   c
||||||  ||||| ||| |||||||||  |||    
ccuuuc  ccguu uac accguaucg  caa   u
      ua     a   a         uc   ggg 

>ggo-mir-31 (-36.00)   [ggo-miR-31:9-29]

      ga     G   C         -U   gaa 
ggagag  GGCAA AUG UGGCAUAGC  Guu   c
||||||  ||||| ||| |||||||||  |||    
ccuuuc  ccguu uac accguaucg  caa   u
      ua     a   a         uc   ggg 

>ppy-mir-31 (-36.00)   [ppy-miR-31:9-29]

      ga     G   C         -U   gaa 
ggagag  GGCAA AUG UGGCAUAGC  Guu   c
||||||  ||||| ||| |||||||||  |||    
ccuuuc  ccguu uac accguaucg  caa   u
      ua     a   a         uc   ggg 

>mne-mir-31 (-36.00)   [mne-miR-31:9-29]

      ga     G   C         -U   gaa 
ggagag  GGCAA AUG UGGCAUAGC  Guu   c
||||||  ||||| ||| |||||||||  |||    
ccuuuc  ccguu uac accguaucg  caa   u
      ua     a   a         uc   ggg 

>ppa-mir-31 (-36.00)   [ppa-miR-31:9-29]

      ga     G   C         -U   gaa 
ggagag  GGCAA AUG UGGCAUAGC  Guu   c
||||||  ||||| ||| |||||||||  |||    
ccuuuc  ccguu uac accguaucg  caa   u
      ua     a   a         uc   ggg 

>mml-mir-32 (-31.90)   [mml-miR-32:6-26]

        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCau g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuuuuaua  gugug ugauuuaacgua c  cg c
        gu     -            a uc  g 

>ptr-mir-32 (-31.90)   [ptr-miR-32:6-26]

        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCau g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuuuuaua  gugug ugauuuaacgua c  cg c
        gu     -            a uc  g 

>ggo-mir-32 (-31.90)   [ggo-miR-32:6-26]

        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCau g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuuuuaua  gugug ugauuuaacgua c  cg c
        gu     -            a uc  g 

>ppy-mir-32 (-31.90)   [ppy-miR-32:6-26]

        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCau g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuuuuaua  gugug ugauuuaacgua c  cg c
        gu     -            a uc  g 

>sla-mir-32 (-31.90)   [sla-miR-32:6-26]

        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCau g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuuuuaua  gugug ugauuuaacgua c  cg c
        gu     -            a uc  g 

>mne-mir-32 (-31.90)   [mne-miR-32:6-26]

        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCau g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuuuuaua  gugug ugauuuaacgua c  cg c
        gu     -            a uc  g 

>ppa-mir-32 (-31.90)   [ppa-miR-32:6-26]

        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCau g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuuuuaua  gugug ugauuuaacgua c  cg c
        gu     -            a uc  g 

>mml-mir-33a (-32.40)   [mml-miR-33a:6-24]

   cg         A UU          uucu  u 
cug  GUGCAUUGU G  GCAUUGcaug    gg g
|||  ||||||||| |  ||||||||||    || g
gac  uacgugaca c  uguaacguac    cc u
   au         c uu          ----  a 

>ptr-mir-33a (-37.30)   [ptr-miR-33a:6-24]

              A UU          uucu  u 
cugugGUGCAUUGU G  GCAUUGcaug    gg g
|||||||||||||| |  ||||||||||    || g
gacacuacgugaca c  uguaacguac    cc u
              c uu          ----  a 

>ggo-mir-33 (-37.30)   [ggo-miR-33:6-24]

              A UU          uucu  u 
cugugGUGCAUUGU G  GCAUUGcaug    gg g
|||||||||||||| |  ||||||||||    || g
gacacuacgugaca c  uguaacguac    cc u
              c uu          ----  a 

>ppy-mir-33 (-33.40)   [ppy-miR-33:6-24]

   c          A UU          uucu  u 
cug gGUGCAUUGU G  GCAUUGcaug    gg g
||| |||||||||| |  ||||||||||    || g
gac cuacgugaca c  uguaacguac    cc u
   a          c uu          ----  a 

>mne-mir-33 (-32.40)   [mne-miR-33:6-24]

   cg         A UU          uucu  u 
cug  GUGCAUUGU G  GCAUUGcaug    gg g
|||  ||||||||| |  ||||||||||    || g
gac  uacgugaca c  uguaacguac    cc u
   au         c uu          ----  a 

>ppa-mir-33 (-37.30)   [ppa-miR-33:6-24]

              A UU          uucu  u 
cugugGUGCAUUGU G  GCAUUGcaug    gg g
|||||||||||||| |  ||||||||||    || g
gacacuacgugaca c  uguaacguac    cc u
              c uu          ----  a 

>ptr-mir-95 (-37.50)   [ptr-miR-95:49-70]

a   c      ca          gu         -   aa 
 aca aguggg  cucaauaaau  cuguugaau uga  u
 ||| ||||||  ||||||||||  ||||||||| |||   
 ugu ucaccc  GAGUUAUUUA  GGCAACUUa auu  g
g   c      AC          UG         c   gc 

>ggo-mir-95 (-37.50)   [ggo-miR-95:49-70]

a   c      ca          gu         -   aa 
 aca aguggg  cucaauaaau  cuguugaau uga  u
 ||| ||||||  ||||||||||  ||||||||| |||   
 ugu ucaccc  GAGUUAUUUA  GGCAACUUa auu  g
g   c      AC          UG         c   gc 

>ppy-mir-95 (-37.50)   [ppy-miR-95:49-70]

a   c      ca          gu         -   aa 
 aca aguggg  cucaauaaau  cuguugaau uga  u
 ||| ||||||  ||||||||||  ||||||||| |||   
 ugu ucaccc  GAGUUAUUUA  GGCAACUUa auu  g
g   c      AC          UG         c   gc 

>sla-mir-95 (-37.50)   [sla-miR-95:49-70]

a   c      ca          gu         -   aa 
 aca aguggg  cucaauaaau  cuguugaau uga  u
 ||| ||||||  ||||||||||  ||||||||| |||   
 ugu ucaccc  GAGUUAUUUA  GGCAACUUa auu  g
g   c      AC          UG         c   gc 

>lla-mir-95 (-37.50)   [lla-miR-95:49-70]

a   c      ca          gu         -   aa 
 aca aguggg  cucaauaaau  cuguugaau uga  u
 ||| ||||||  ||||||||||  ||||||||| |||   
 ugu ucaccc  GAGUUAUUUA  GGCAACUUa auu  g
g   c      AC          UG         c   gc 

>ppa-mir-95 (-37.50)   [ppa-miR-95:49-70]

a   c      ca          gu         -   aa 
 aca aguggg  cucaauaaau  cuguugaau uga  u
 ||| ||||||  ||||||||||  ||||||||| |||   
 ugu ucaccc  GAGUUAUUUA  GGCAACUUa auu  g
g   c      AC          UG         c   ac 

>mml-mir-98 (-31.40)   [mml-miR-98:2-23]

gU                 U    ---------      aggg 
  GAGGUAGUAAGUUGUAU GUUg         uggggu    a
  ||||||||||||||||| ||||         ||||||    u
  uuucaucauucaacaua caau         accccg    a
cc                 u    agaagauua      gauu 

>ptr-mir-98 (-57.00)   [ptr-miR-98:22-43]

a    uc    -          U                 U    ---------      aggg 
 ggau  ugcu caugccaggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||||  |||| |||||||||| ||||||||||||||||| ||||         ||||||    u
 cuua  acgg gugugguccc uuucaucauucaacaua caau         accccg    a
a    -u    u          -                 u    agaagauua      gauu 

>ggo-mir-98 (-31.40)   [ggo-miR-98:2-23]

gU                 U    ---------      aggg 
  GAGGUAGUAAGUUGUAU GUUg         uggggu    a
  ||||||||||||||||| ||||         ||||||    u
  uuucaucauucaacaua caau         accccg    a
cc                 u    agaagauua      gauu 

>ppy-mir-98 (-31.40)   [ppy-miR-98:2-23]

gU                 U    ---------      aggg 
  GAGGUAGUAAGUUGUAU GUUg         uggggu    a
  ||||||||||||||||| ||||         ||||||    u
  uuucaucauucaacaua caau         accccg    a
cc                 u    agaagauua      gauu 

>age-mir-98 (-31.40)   [age-miR-98:2-23]

gU                 U    ---------      aggg 
  GAGGUAGUAAGUUGUAU GUUg         uggggu    a
  ||||||||||||||||| ||||         ||||||    u
  uuucaucauucaacaua caau         accccg    a
cc                 u    agaagauua      gauu 

>ppa-mir-98 (-31.40)   [ppa-miR-98:2-23]

gU                 U    ---------      aggg 
  GAGGUAGUAAGUUGUAU GUUg         uggggu    a
  ||||||||||||||||| ||||         ||||||    u
  uuucaucauucaacaua caau         accccg    a
cc                 u    agaagauua      gauu 

>mml-mir-99a (-39.60)   [mml-miR-99a:13-34]

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu uggguaucu  gcu gaacac gc   g
gu          c         uc   c      -  cag 

>ptr-mir-99a (-39.60)   [ptr-miR-99a:13-34]

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu uggguaucu  gcu gaacac gc   g
gu          c         uc   c      -  cag 

>ggo-mir-99a (-39.60)   [ggo-miR-99a:13-34]

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu uggguaucu  gcu gaacac gc   g
gu          c         uc   c      -  cag 

>ppy-mir-99a (-38.70)   [ppy-miR-99a:13-34]

cc          A         UC   U  --      aa 
  cauuggcaua ACCCGUAGA  CGA CU  UGUGgu  a
  |||||||||| |||||||||  ||| ||  ||||||  g
  gugacugugu uggguaucu  gcu ga  acgcca  u
gu          c         uc   c  ac      gg 

>lla-mir-99a (-39.60)   [lla-miR-99a:13-34]

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu uggguaucu  gcu gaacac gc   g
gu          c         uc   c      -  cag 

>mne-mir-99a (-39.60)   [mne-miR-99a:13-34]

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu uggguaucu  gcu gaacac gc   g
gu          c         uc   c      -  cag 

>ppa-mir-99a (-39.60)   [ppa-miR-99a:13-34]

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu uggguaucu  gcu gaacac gc   g
gu          c         uc   c      -  cag 

>ggo-mir-100 (-26.80)   [ggo-miR-100:13-34]

    -uu c    A   CG     C   A      - uau 
ccug   g caca ACC  UAGAU CGA CUUGUG g   u
||||   | |||| |||  ||||| ||| |||||| |    
ggau   c gugu ugg  aucua guu gaacac c   a
    ugu u    a   au     u   c      g cug 

>age-mir-100 (-27.20)   [age-miR-100:13-34]

    -uu c    A   CG    UC   A      gugu 
ccug   g caca ACC  UAGA  CGA CUUGUG    u
||||   | |||| |||  ||||  ||| ||||||    a
ggau   c gugu ugg  aucu  guu gaacac    g
    ugu u    a   au    gu   c      gucu 

>ppa-mir-100 (-26.80)   [ppa-miR-100:13-34]

    -uu c    A   CG     C   A      - uau 
ccug   g caca ACC  UAGAU CGA CUUGUG g   u
||||   | |||| |||  ||||| ||| |||||| |    
ggau   c gugu ugg  aucua guu gaacac c   a
    ugu u    a   au     u   c      g cug 

>ppy-mir-100 (-26.80)   [ppy-miR-100:13-34]

    -uu c    A   CG     C   A      - uau 
ccug   g caca ACC  UAGAU CGA CUUGUG g   u
||||   | |||| |||  ||||| ||| |||||| |    
ggau   c gugu ugg  aucua guu gaacac c   a
    ugu u    a   au     u   c      g cug 

>ptr-mir-100 (-26.80)   [ptr-miR-100:13-34]

    -uu c    A   CG     C   A      - uau 
ccug   g caca ACC  UAGAU CGA CUUGUG g   u
||||   | |||| |||  ||||| ||| |||||| |    
ggau   c gugu ugg  aucua guu gaacac c   a
    ugu u    a   au     u   c      g cug 

>mml-mir-100 (-27.30)   [mml-miR-100:13-34]

    -uu c    A   CG    UC   A      - uau 
ccug   g caca ACC  UAGA  CGA CUUGUG g   u
||||   | |||| |||  ||||  ||| |||||| |    
ggau   c gugu ugg  aucu  guu gaacac c   a
    uuu u    a   au    gu   c      g cug 

>sla-mir-100 (-27.30)   [sla-miR-100:13-34]

    -uu c    A   CG    UC   A     G ug u 
ccug   g caca ACC  UAGA  CGA CUUGU g  u a
||||   | |||| |||  ||||  ||| ||||| |  |  
ggau   c gugu ugg  aucu  guu gaaca c  g a
    ugu u    a   au    gu   c     - gu u 

>lla-mir-100 (-27.20)   [lla-miR-100:13-34]

    -uu c    A   CG    UC   A      gugu 
ccug   g caca ACC  UAGA  CGA CUUGUG    u
||||   | |||| |||  ||||  ||| ||||||    a
ggau   c gugu ugg  aucu  guu gaacac    g
    ugu u    a   au    gu   c      gucu 

>ggo-mir-101 (-36.20)   [ggo-miR-101:47-68]

u   cuggc                  a    gucca 
 gcc     ucaguuaucacagugcug ugcu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uagGA                  -    aaauc 

>sla-mir-101 (-36.20)   [sla-miR-101:47-68]

u   cuggc                  a    gucca 
 gcc     ucaguuaucacagugcug ugcu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uagGA                  -    aaauc 

>age-mir-101 (-36.20)   [age-miR-101:47-68]

u   cuggc                  a    gucua 
 gcc     ucaguuaucacagugcug ugcu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uagGA                  -    aaauc 

>ppa-mir-101 (-36.20)   [ppa-miR-101:47-68]

u   cuggc                  a    gucca 
 gcc     ucaguuaucacagugcug ugcu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uagGA                  -    aaauc 

>ppy-mir-101 (-36.20)   [ppy-miR-101:47-67]

u   cuggc                  a    gucua 
 gcc     ucaguuaucacagugcug ugcu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uaggA                  -    aaauc 

>ptr-mir-101-1 (-36.20)   [ptr-miR-101:47-68]

u   cuggc                  a    gucca 
 gcc     ucaguuaucacagugcug ugcu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uagGA                  -    aaauc 

>mml-mir-101-1 (-36.20)   [mml-miR-101:47-68]

u   cuggc                  a    gucca 
 gcc     ucaguuaucacagugcug ugcu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uagGA                  -    aaauc 

>lla-mir-101 (-36.20)   [lla-miR-101:47-68]

u   cuggc                  a    gucca 
 gcc     ucaguuaucacagugcug ugcu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uagGA                  -    aaauc 

>mne-mir-101 (-36.20)   [mne-miR-101:47-68]

u   cuggc                  a    gucca 
 gcc     ucaguuaucacagugcug ugcu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uagGA                  -    aaauc 

>ppy-mir-29b-1 (-34.02)   [ppy-miR-29b:51-70]

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucuu UGACUAAAGU UACCAC  GAUcug     g
g         g          U      --      uuagu 

>ptr-mir-29b-1 (-34.02)   [ptr-miR-29b:51-70]

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucuu UGACUAAAGU UACCAC  GAUcug     g
g         g          U      --      uuagu 

>ggo-mir-29b-1 (-34.02)   [ggo-miR-29b:51-70]

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucuu UGACUAAAGU UACCAC  GAUcug     g
g         g          U      --      uuagu 

>lla-mir-29b (-34.02)   [lla-miR-29b:51-70]

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucuu UGACUAAAGU UACCAC  GAUcug     g
g         g          U      --      uuagu 

>age-mir-29b (-34.02)   [age-miR-29b:51-70]

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucuu UGACUAAAGU UACCAC  GAUcug     g
g         g          U      --      uuagu 

>ppa-mir-29b-1 (-34.02)   [ppa-miR-29b:51-70]

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucuu UGACUAAAGU UACCAC  GAUcug     g
g         g          U      --      uuagu 

>ptr-mir-29b-2 (-31.24)   [ptr-miR-29b:52-71]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuuu UGACUAAAGU UACCAC GA Ucua      u
         g          U      -  -    uguuuc 

>ggo-mir-29b-2 (-31.24)   [ggo-miR-29b:52-71]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuuu UGACUAAAGU UACCAC GA Ucua      u
         g          U      -  -    uguuuc 

>ppy-mir-29b-2 (-31.24)   [ppy-miR-29b:52-71]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuuu UGACUAAAGU UACCAC GA Ucua      u
         g          U      -  -    uguuuc 

>sla-mir-29b (-31.24)   [sla-miR-29b:52-71]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuuu UGACUAAAGU UACCAC GA Ucua      u
         g          U      -  -    uguuuc 

>mne-mir-29b (-31.24)   [mne-miR-29b:52-71]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuuu UGACUAAAGU UACCAC GA Ucua      u
         g          U      -  -    uguuuc 

>ppa-mir-29b-2 (-31.24)   [ppa-miR-29b:52-71]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuuu UGACUAAAGU UACCAC GA Ucua      u
         g          U      -  -    uguuuc 

>age-mir-103 (-30.90)   [age-miR-103:48-70]

uac    c  --    u  u           c   u g a 
   ugcc uc  ggcu cu uacagugcugc uug u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 

>ggo-mir-103 (-30.90)   [ggo-miR-103:48-70]

uac    c  --    u  u           c   u g a 
   ugcc uc  ggcu cu uacagugcugc uug u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 

>ppa-mir-103 (-30.90)   [ppa-miR-103:48-70]

uac    c  --    u  u           c   u g a 
   ugcc uc  ggcu cu uacagugcugc uug u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 

>ppy-mir-103 (-30.90)   [ppy-miR-103:48-70]

uac    c  --    u  u           c   u g a 
   ugcc uc  ggcu cu uacagugcugc uug u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 

>ptr-mir-103-1 (-30.90)   [ptr-miR-103:48-70]

uac    c  --    u  u           c   u g a 
   ugcc uc  ggcu cu uacagugcugc uug u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 

>mml-mir-103-1 (-30.90)   [mml-miR-103:48-70]

uac    c  --    u  u           c   u g a 
   ugcc uc  ggcu cu uacagugcugc uug u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 

>lla-mir-103 (-30.90)   [lla-miR-103:48-70]

uac    c  --    u  u           c   u g a 
   ugcc uc  ggcu cu uacagugcugc uug u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 

>mne-mir-103 (-30.90)   [mne-miR-103:48-70]

uac    c  --    u  u           c   u g a 
   ugcc uc  ggcu cu uacagugcugc uug u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 

>ppy-mir-105 (-43.10)   [ppy-miR-105:13-35]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUGGUg c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcauc gu uacgaguuug  ggcaccac g  c
auc         -  g          ua        - ua 

>ggo-mir-105 (-43.10)   [ggo-miR-105:13-32]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUggug c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcauc gu uacgaguuug  ggcaccac g  c
auc         -  g          ua        - ua 

>ppa-mir-105 (-43.10)   [ppa-miR-105:13-32]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUggug c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcauc gu uacgaguuug  ggcaccac g  c
auc         -  g          ua        - ua 

>ptr-mir-105 (-41.30)   [ptr-miR-105:13-32]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUggug c  c
   ||||||||| || ||||||||||  |||||||| |  u
   ugugguauc gu uacgaguuug  ggcaccac g  u
auc         -  g          ua        - ua 

>mml-mir-105-1 (-43.10)   [mml-miR-105:13-35]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUGGUg c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcauc gu uacgaguuug  ggcaccac g  c
auc         -  g          ua        - ua 

>sla-mir-105 (-43.10)   [sla-miR-105:13-32]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUggug c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcauc gu uacgaguuug  ggcaccac g  c
auc         -  g          ua        - ua 

>lla-mir-105 (-43.10)   [lla-miR-105:13-32]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUggug c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcauc gu uacgaguuug  ggcaccac g  c
auc         -  g          ua        - ua 

>mne-mir-105 (-43.10)   [mne-miR-105:13-32]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUggug c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcauc gu uacgaguuug  ggcaccac g  c
auc         -  g          ua        - ua 

>mml-mir-107 (-29.60)   [mml-miR-107:50-72]

c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

>ptr-mir-107 (-29.60)   [ptr-miR-107:50-72]

c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

>ggo-mir-107 (-29.60)   [ggo-miR-107:50-72]

c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

>ppy-mir-107 (-29.60)   [ppy-miR-107:50-72]

c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

>lla-mir-107 (-29.60)   [lla-miR-107:50-72]

c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

>mne-mir-107 (-29.60)   [mne-miR-107:50-72]

c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

>ppa-mir-107 (-29.60)   [ppa-miR-107:50-72]

c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

>ggo-mir-124a (-51.20)   [ggo-miR-124a:61-82]

a     au   ----            cc        a   ga        uaau 
 ucaag  uag    aggcucugcucu  guguucac gcg  ccuugauu    g
 |||||  |||    ||||||||||||  |||||||| |||  ||||||||    u
 aguuc  guc    uccgaggcgaga  CGUAAGUG CGC  GGAAUUaa    c
a     ac   ggca            AC        G   AC        caua 

>age-mir-124a (-45.10)   [age-miR-124a:61-82]

au    au   ----         c  cc        a   ga        uaau 
  caag  cag    aggcucugc cu  guguucac gcg  ccuugauu    g
  ||||  |||    ||||||||| ||  |||||||| |||  ||||||||    u
  guuc  guc    uccgaggcg ga  CGUAAGUG CGC  GGAAUUaa    c
--    ac   ggca         a  AC        G   AC        caua 

>ppa-mir-124a (-51.20)   [ppa-miR-124a:61-82]

a     au   ----            cc        a   ga        uaau 
 ucaag  uag    aggcucugcucu  guguucac gcg  ccuugauu    g
 |||||  |||    ||||||||||||  |||||||| |||  ||||||||    u
 aguuc  guc    uccgaggcgaga  CGUAAGUG CGC  GGAAUUaa    c
a     ac   ggca            AC        G   AC        caua 

>ppy-mir-124a (-46.40)   [ppy-miR-124a:61-82]

a     au   ----         c  cc        a   ga        uaau 
 ucaag  uag    aggcucugc cu  guguucac gcg  ccuugauu    g
 |||||  |||    ||||||||| ||  |||||||| |||  ||||||||    u
 aguuc  guc    uccgaggcg ga  CGUAAGUG CGC  GGAAUUaa    c
a     ac   ggca         a  AC        G   AC        caua 

>ptr-mir-124a (-51.20)   [ptr-miR-124a:61-82]

a     au   ----            cc        a   ga        uaau 
 ucaag  uag    aggcucugcucu  guguucac gcg  ccuugauu    g
 |||||  |||    ||||||||||||  |||||||| |||  ||||||||    u
 aguuc  guc    uccgaggcgaga  CGUAAGUG CGC  GGAAUUaa    c
a     ac   ggca            AC        G   AC        caua 

>mml-mir-124a-1 (-48.00)   [mml-miR-124a:61-82]

a     au   ----         c  cc        a   ga        uaau 
 ucaag  cag    aggcucugc cu  guguucac gcg  ccuugauu    g
 |||||  |||    ||||||||| ||  |||||||| |||  ||||||||    u
 aguuc  guc    uccgaggcg ga  CGUAAGUG CGC  GGAAUUaa    c
a     ac   ggca         a  AC        G   AC        caua 

>lla-mir-124a (-45.10)   [lla-miR-124a:61-82]

au    au   ----         c  cc        a   ga        uaau 
  caag  cag    aggcucugc cu  guguucac gcg  ccuugauu    g
  ||||  |||    ||||||||| ||  |||||||| |||  ||||||||    u
  guuc  guc    uccgaggcg ga  CGUAAGUG CGC  GGAAUUaa    c
--    ac   agca         a  AC        G   AC        caua 

>lla-mir-139 (-34.90)   [lla-miR-139:7-24]

gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUccagu u  c
   ||||||| ||| || |||||||||||| |  u
   augaggu guc cg gcgcagaggucg a  c
-ca       u   c  -            g gg 

>ppa-mir-139 (-34.90)   [ppa-miR-139:7-24]

gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUccagu u  c
   ||||||| ||| || |||||||||||| |  u
   augaggu guc cg gcgcagaggucg a  c
-ca       u   c  -            g gg 

>ptr-mir-147a (-24.90)   [ptr-miR-147a:47-66]

      -a    aa      ug     ---aca   g 
aaucua  agaa  cauuuc  cacac      cca a
||||||  ||||  ||||||  |||||      ||| c
uuagau  UCUU  GUAAAG  GUGUG      ggu u
      CG    -C      GU     accgaa   a 

>ppy-mir-147 (-24.90)   [ppy-miR-147:47-66]

      -a    aa      ug     ---aca   g 
aaucua  agaa  cauuuc  cacac      cca a
||||||  ||||  ||||||  |||||      ||| c
uuagau  UCUU  GUAAAG  GUGUG      ggu u
      CG    -C      GU     accgaa   a 

>sla-mir-147 (-17.45)   [sla-miR-147:47-66]

-aaucuaa    aa      ug     acaccagac 
        agaa  cauuuc  cacac         u
        ||||  ||||||  |||||          
        UCUU  GUAAAG  GUGUG         a
uuacacCG    -C      GU     accgaaguu 

>mne-mir-147 (-17.45)   [mne-miR-147:47-66]

-aaucuaa    aa      ug     acaccagac 
        agaa  cauuuc  cacac         u
        ||||  ||||||  |||||          
        UCUU  GUAAAG  GUGUG         a
uuacauCG    -C      GU     accgaaguu 

>ppa-mir-147 (-24.90)   [ppa-miR-147:47-66]

      -a    aa      ug     ---aca   g 
aaucua  agaa  cauuuc  cacac      cca a
||||||  ||||  ||||||  |||||      ||| c
uuagau  UCUU  GUAAAG  GUGUG      ggu u
      CG    -C      GU     accgaa   a 

>ggo-mir-7-1 (-48.00)   [ggo-miR-7:24-44]

--u    u  -      a  u        A     A       U      --     a 
   ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUguu  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguauacc ucuga cacuaaa caacag  aaauc a
gac    c  u      -  c        g     -       -      cu     a 

>ppy-mir-7-1 (-48.00)   [ppy-miR-7:24-44]

--u    u  -      a  u        A     A       U      --     a 
   ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUguu  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguauacc ucuga cacuaaa caacag  aaauc a
gac    c  u      -  c        g     -       -      cu     a 

>sla-mir-7 (-44.30)   [sla-miR-7:24-44]

-----uu  auau      a  u        A     A       U      uuua   aa 
       gg    uggccu gu cugugUGG AGACU GUGAUUU GUUguu    gau  u
       ||    |||||| || |||||||| ||||| ||||||| ||||||    |||   
       cc    accgga ca gguauacc ucuga cacuaaa caacag    cua  u
gacaucu  --gu      -  c        g     -       -      ----   aa 

>lla-mir-7 (-48.00)   [lla-miR-7:24-44]

--u    u  -      a  u        A     A       U      --     a 
   ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUguu  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguauacc ucuga cacuaaa caacag  aaauc a
gac    c  u      -  c        g     -       -      cu     a 

>mne-mir-7-1 (-48.00)   [mne-miR-7:24-44]

--u    u  -      a  u        A     A       U      --     a 
   ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUguu  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguauacc ucuga cacuaaa caacag  aaauc a
gac    c  u      -  c        g     -       -      uu     a 

>ppa-mir-7-1 (-48.00)   [ppa-miR-7:24-44]

--u    u  -      a  u        A     A       U      --     a 
   ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUguu  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguauacc ucuga cacuaaa caacag  aaauc a
gac    c  u      -  c        g     -       -      cu     a 

>ggo-mir-7-2 (-45.60)   [ggo-miR-7:32-52]

cugcauacaga    acc       c    cU  A     A U     U       ucuua 
           gugg   ggcuggc ccau  GG AGACU G GAUUU GUUguug     c
           ||||   ||||||| ||||  || ||||| | ||||| |||||||      
           cgcu   ccgaccg ggua  cc ucuga c cuaaa caacaac     u
----------a    --a       u    au  g     c -     -       ucgcg 

>ppy-mir-7-2 (-46.50)   [ppy-miR-7:32-52]

cuggauacaga    acc       c    cU  A     A U     U       ucuua 
           gugg   ggcuggc ccgu  GG AGACU G GAUUU GUUguug     c
           ||||   ||||||| ||||  || ||||| | ||||| |||||||      
           cgcu   ccgaccg ggua  cc ucuga c cuaaa caacaac     u
----------a    --a       u    au  g     c -     -       ucgcg 

>mne-mir-7-2 (-47.70)   [mne-miR-7:32-52]

cuggauacagag  a          c    c   A     A U     U       ucuua 
            ug aguggcuggc ccgu UGG AGACU G GAUUU GUUguug     c
            || |||||||||| |||| ||| ||||| | ||||| |||||||      
            ac uuaccgaccg ggua gcc ucuga c cuaag caacaac     u
------------  g          u    a   g     c -     -       ucgcg 

>ppa-mir-7-2 (-41.00)   [ppa-miR-7:32-52]

cuggauacagagcg  cca      c    cU  A     A U     U       ucuua 
              ga   gcuggc ccau  GG AGACU G GAUUU GUUguug     c
              ||   |||||| ||||  || ||||| | ||||| |||||||      
              cu   cgaccg ggua  cc ucuga c cuaaa caacaac     u
-----------aca  -ac      u    au  a     c -     -       ucgcg 

>ptr-mir-7-3 (-39.10)   [ptr-miR-7:31-53]

agauua   u  cugu     a        U  AA A  A       U      c  au 
      gag gg    ggucu gugcugug GG  G CU GUGAUUU GUUGUu ug  g
      ||| ||    ||||| |||||||| ||  | || ||||||| |||||| ||   
      cuu cc    ucaga cgcgauac cc  c ga cacugaa caacag au  u
---cag   c  ----     -        u  gg c  -       -      c  ca 

>ggo-mir-7-3 (-43.40)   [ggo-miR-7:31-51]

agac     u  cugu     a        U  AA A  A       U      c  au 
    uggag gg    ggucu gugcugug GG  G CU GUGAUUU GUUguu ug  g
    ||||| ||    ||||| |||||||| ||  | || ||||||| |||||| ||   
    gcuuc cc    ucaga cgcgacac cc  c ga cacugaa caacag au  u
--ca     -  ----     -        u  gg c  -       -      c  ca 

>ppa-mir-7-3 (-39.10)   [ppa-miR-7:31-51]

agauua   u  cugu     a        U  AA A  A       U      c  au 
      gag gg    ggucu gugcugug GG  G CU GUGAUUU GUUguu ug  g
      ||| ||    ||||| |||||||| ||  | || ||||||| |||||| ||   
      cuu cc    ucaga cgcgauac cc  c ga cacugaa caacag au  u
---cag   c  ----     -        u  gg c  -       -      c  ca 

>ggo-mir-10a (-32.39)   [ggo-miR-10a:22-44]

-----gauc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguaua gggg aucua gcuuaaacac       u
ucucgccuc   aau    uu        a    -     u          ugguguu 

>ppy-mir-10a (-32.49)   [ppy-miR-10a:22-44]

-----gauc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCC UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguaua gggg auuua gcuuaaacac       u
gcucgccuc   aau    uu        a    -     u          ugguguu 

>sla-mir-10a (-32.39)   [sla-miR-10a:22-44]

-----gauc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguaua gggg aucua gcuuaaacac       u
acucgccuc   aau    uu        a    -     u          ugguguu 

>age-mir-10a (-32.39)   [age-miR-10a:22-44]

-----gauc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguaua gggg aucua gcuuaaacac       u
acucgccuc   aau    uu        a    -     u          ugguguu 

>ppa-mir-10a (-31.29)   [ppa-miR-10a:22-44]

-------gauc   c    uu        A    G     C     U    uaaggaa 
           ugu uguc  cuguauaU CCCU UAGAU CGAAU UGUG       u
           ||| ||||  |||||||| |||| ||||| ||||| ||||        
           aca acag  gauguaua gggg aucua gcuua acac       u
ucucgccucac   u    uu        a    -     u     c    ugguguu 

>ggo-mir-10b (-37.60)   [ggo-miR-10b:27-48]

cca  ca  guaa     u        A    G     C          -ug   u 
   ga  uu    cguug cuauauaU CCCU UAGAA CGAAUUUGUg   gua c
   ||  ||    ||||| |||||||| |||| ||||| ||||||||||   |||  
   cu  aa    guagc gguauaua gggg aucuu gcuuagacac   uau c
--a  uc  aaac     u        a    -     a          uga   a 

>mne-mir-10b (-44.70)   [mne-miR-10b:26-47]

ca      guaa     u        A    G     C          -ug   u 
  gagguu    cguug cuauauaU CCCU UAGAA CGAAUUUGUg   gua c
  ||||||    ||||| |||||||| |||| ||||| ||||||||||   |||  
  cuucaa    guagc gguauaua gggg aucuu gcuuagacac   uau c
-a      aaac     u        a    -     a          uga   a 

>ppa-mir-10b (-45.00)   [ppa-miR-10b:27-48]

cca      guaa     u        A    G     C          -ug   u 
   gagguu    cguug cuauauaU CCCU UAGAA CGAAUUUGUg   gua c
   ||||||    ||||| |||||||| |||| ||||| ||||||||||   |||  
   cuucaa    guagc gguauaua gggg aucuu gcuuagacac   uau c
--a      aaac     u        a    -     a          uga   g 

>ggo-mir-34a (-50.70)   [ggo-miR-34a:22-43]

-    -a  --    -  ug     uU        -   A          -guga  a 
 ggcc  gc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu     gc a
 ||||  ||  |||| ||  |||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  gcac uc  gaaga  ccgucaua gaa cgacuaacga     ug u
c    gg  uu    g  gu     uc        u   -          aggaa  a 

>age-mir-34a (-51.30)   [age-miR-34a:22-43]

-    -a  --    -  ug     uU        -   A          gugug  a 
 ggcc  gc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu     ca u
 ||||  ||  |||| ||  |||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  gcac uc  gaaga  ccgucaua gaa cgacuaacga     gu a
c    gg  uu    g  gu     uc        u   -          aggaa  g 

>ppa-mir-34a (-51.10)   [ppa-miR-34a:22-43]

---     -gc    -  ug     uU        -   A          -guga  a 
   ggcca   ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu     gc a
   |||||   |||| ||  |||||  |||||||| ||| ||||||||||     ||  
   ccggu   gcac uc  gaaga  ccgucaua gaa cgacuaacga     ug u
ccc     guu    g  gu     uc        u   -          aggaa  a 

>ppy-mir-34a (-50.70)   [ppy-miR-34a:22-43]

-    -a  --    -  ug     uU        -   A          -guga  a 
 ggcc  gc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu     gc a
 ||||  ||  |||| ||  |||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  gcac uc  gaaga  ccgucaua gaa cgacuaacga     ug u
c    gg  uu    g  gu     uc        u   -          aggaa  a 

>ptr-mir-34a (-50.70)   [ptr-miR-34a:22-43]

-    -a  --    -  ug     uU        -   A          -guga  a 
 ggcc  gc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu     gc a
 ||||  ||  |||| ||  |||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  gcac uc  gaaga  ccgucaua gaa cgacuaacga     ug u
c    gg  uu    g  gu     uc        u   -          aggaa  a 

>mml-mir-34a (-51.80)   [mml-miR-34a:22-43]

-    -a  --    -  ug     uU        -   A          -guga  a 
 ggcc  gc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu     gc a
 ||||  ||  |||| ||  |||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  acac uc  gaaga  ccgucaua gaa cgacuaacga     ug u
u    gg  uu    a  gu     uc        u   -          aggaa  a 

>sla-mir-34a (-49.70)   [sla-miR-34a:22-43]

-   - g  --    -  ug     uU        -   A          gugag  a 
 ggc c gc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu     ca u
 ||| | ||  |||| ||  |||||  |||||||| ||| ||||||||||     ||  
 ccg g ug  gcac uc  gaaga  ccgucaua gaa cgacuaacga     gu a
c   g g  uu    g  gu     uc        u   -          aggaa  g 

>lla-mir-34a (-51.30)   [lla-miR-34a:22-43]

-    -a  --    -  ug     uU        -   A          gugag  a 
 ggcc  gc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu     ca u
 ||||  ||  |||| ||  |||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  gcac uc  gaaga  ccgucaua gaa cgacuaacga     gu a
c    gg  uu    g  gu     uc        u   -          aggaa  g 

>mne-mir-34a (-51.80)   [mne-miR-34a:22-43]

-    -a  --    -  ug     uU        -   A          -guga  a 
 ggcc  gc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu     gc a
 ||||  ||  |||| ||  |||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  acac uc  gaaga  ccgucaua gaa cgacuaacga     ug u
u    gg  uu    a  gu     uc        u   -          aggaa  a 

>ggo-mir-181a-2 (-54.00)   [ggo-miR-181a:39-61]

agaagggcuaucaggccaggcuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguucc ugu aguugc  cagucac caaa    u
------------------------a             a   c      --       -    aaag 

>ppa-mir-181a-2 (-54.00)   [ppa-miR-181a:39-61]

agaagggcuaucaggccagccuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguucc ugu aguugc  cagucac caaa    u
------------------------a             a   c      --       -    aaag 

>ptr-mir-181a-2 (-54.00)   [ptr-miR-181a:39-61]

agaagggcuaucaggccagccuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguucc ugu aguugc  cagucac caaa    u
------------------------a             a   c      --       -    aaag 

>mml-mir-181a-2 (-49.90)   [mml-miR-181a:39-61]

agaagggcuaucaggccagccuuca         a   A   U      CU       A    ggga 
                         gaggacucc agg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||| ||| ||| ||||||  ||||||| ||||    u
                         uuccugggg ucc ugu aguugc  cagucac caaa    u
------------------------a         c   a   c      --       -    aaag 

>sla-mir-181a-2 (-53.82)   [sla-miR-181a:39-61]

agaagggcuaccaggccaaccuuca             A   U      CU       A    gggac 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu     u
                         ||||||||||||| ||| ||||||  ||||||| ||||     u
                         uuccugggguucc ugu aguugc  cagucac caaa     g
------------------------a             a   c      --       -    aaaaa 

>mne-mir-181a-2 (-47.70)   [mne-miR-181a:39-61]

agaagggcuaucaggccagccuuca a       a   A   U      CU       A    ggga 
                         g ggacucc agg ACA UCAACG  GUCGGUG GUuu    u
                         | ||||||| ||| ||| ||||||  ||||||| ||||    u
                         c ccugggg ucc ugu aguugc  cagucac caaa    u
------------------------a c       c   a   c      --       -    aaag 

>mml-mir-181c (-46.26)   [mml-miR-181c:27-48]

c   -gaauuug   ag     g    AA        CU       A     ggca 
 gga        cca  gguuu gggg  CAUUCAAC  GUCGGUG GUuug    g
 |||        |||  ||||| ||||  ||||||||  ||||||| |||||    c
 ccu        ggu  ccaga uccc  gugaguug  cagcuac caaac    u
u   accguuca   --     g    ag        -c       -     ggac 

>ptr-mir-181c (-44.66)   [ptr-miR-181c:27-48]

c   -aaauuug   a  g  ug   gAA        CU       A     ggca 
 gga        cca gg uu  ggg   CAUUCAAC  GUCGGUG GUuug    g
 |||        ||| || ||  |||   ||||||||  ||||||| |||||    c
 ccu        ggu cc ga  ccc   gugaguug  cagcuac caaac    u
u   accguuaa   -  g  gu   -ag        -c       -     ggac 

>ggo-mir-181c (-44.66)   [ggo-miR-181c:27-48]

c   -aaauuug   a  g  ug   gAA        CU       A     ggca 
 gga        cca gg uu  ggg   CAUUCAAC  GUCGGUG GUuug    g
 |||        ||| || ||  |||   ||||||||  ||||||| |||||    c
 ccu        ggu cc ga  ccc   gugaguug  cagcuac caaac    u
u   accguuaa   -  g  gu   -ag        -c       -     ggac 

>ppa-mir-181c (-44.66)   [ppa-miR-181c:27-48]

c   -aaauuug   a  g  ug   gAA        CU       A     ggca 
 gga        cca gg uu  ggg   CAUUCAAC  GUCGGUG GUuug    g
 |||        ||| || ||  |||   ||||||||  ||||||| |||||    c
 ccu        ggu cc ga  ccc   gugaguug  cagcuac caaac    u
u   accguuaa   -  g  gu   -ag        -c       -     ggac 

>mml-mir-182 (-47.34)   [mml-miR-182:25-46]

caca    -  -u   uc -      uU       U -G      UCA      ugaggu 
    gcug cu  gcc  c cccugu  UUGGCAA G  UAGAAC   CAcugg      a
    |||| ||  |||  | ||||||  ||||||| |  ||||||   ||||||       
    cggc ga  cgg  g ggggca  aaccguu c  aucuug   guggcc      a
--ca    c  cu   ga c      uc       - ag      ---      uagggu 

>ppy-mir-182 (-45.44)   [ppy-miR-182:25-46]

caca    -  --ug    c      uU       U -G      UCA      ugaggu 
    gcug cu    ccuu ccccgu  UUGGCAA G  UAGAAC   CAcugg      a
    |||| ||    |||| ||||||  ||||||| |  ||||||   ||||||       
    cggc ga    ggag ggggua  aaccguu c  aucuug   guggcc      a
--ca    c  cuca    c      uc       - ag      ---      uaggac 

>ggo-mir-187 (-47.91)   [ggo-miR-187:71-91]

g u      caccaugacacag    aga    g    a           c  -  c - ug 
 g cgggcu             ugug   ccuc ggcu caacacaggac cg gg g c  c
 | ||||||             ||||   |||| |||| ||||||||||| || || | |   
 c gccugg             acgc   ggag CCGA GUUGUGUUCUG GC cc c g  u
a -      -------------    -ag    G    C           U  U  c a uc 

>ppy-mir-187 (-44.20)   [ppy-miR-187:71-91]

gguugggcucaccau   aca    gaga    g    a           c  -  c - ug 
               gac   gugu    ccuc ggcu caacauaggac cg gg g c  c
               |||   ||||    |||| |||| ||||||||||| || || | |   
               cug   cgca    ggag CCGA GUUGUGUUCUG GC cc c g  u
-----------acgc   -ga    ---g    G    C           U  U  c a uc 

>mne-mir-187 (-46.60)   [mne-miR-187:71-91]

ggucaggcucacuaugacacagugugaga    g    a           - -c   ug ug 
                             ccuc ggcu caacacaggac c  ggg  c  c
                             |||| |||| ||||||||||| |  |||  |   
                             ggag CCGA GUUGUGUUCUG G  ccc  g  u
---------------acgccuggacgcag    G    C           U CU   ca uc 

>ppa-mir-187 (-47.91)   [ppa-miR-187:71-91]

g u      caccaugacacag    aga    g    a           c  -  c - ug 
 g cgggcu             ugug   ccuc ggcu caacacaggac cg gg g c  c
 | ||||||             ||||   |||| |||| ||||||||||| || || | |   
 c gccugg             acgc   ggag CCGA GUUGUGUUCUG GC cc c g  u
a -      -------------    -ag    G    C           U  U  c a uc 

>mml-mir-196a-1 (-25.80)   [mml-miR-196a:7-27]

      UA   A    C         - gc ugg 
gugaau  GGU GUUU AUGUUGUUG G  c   g
||||||  ||| |||| ||||||||| |  |   u
cacuua  cca caaa uacaacaac c  g   u
      gc   c    u         a aa ucu 

>ggo-mir-196-1 (-25.80)   [ggo-miR-196:7-27]

      UA   A    C         - gc ugg 
gugaau  GGU GUUU AUGUUGUUG G  c   g
||||||  ||| |||| ||||||||| |  |   u
cacuua  cca caaa uacaacaac c  g   u
      gc   c    u         a aa ucu 

>ppy-mir-196-1 (-25.80)   [ppy-miR-196:7-27]

      UA   A    C         - gc ugg 
gugaau  GGU GUUU AUGUUGUUG G  c   g
||||||  ||| |||| ||||||||| |  |   u
cacuua  cca caaa uacaacaac c  g   u
      gc   c    u         a aa ucu 

>ptr-mir-196a-2 (-51.20)   [ptr-miR-196a:25-46]

-ug    - -uc       --c                  A          a ug   
   cucg c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
   |||| |   |||||||   |||||||||||||||||| |||||||||| |  | u
   gagc g   uuggcug   acauugaguccgucaaag acaacggcuc a  uu 
cgg    u cuu       acu                  a          a gu   

>ggo-mir-196-2 (-51.20)   [ggo-miR-196:25-45]

-ug    - -uc       --c                  A          a ug   
   cucg c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGg u  ag 
   |||| |   |||||||   |||||||||||||||||| |||||||||| |  | u
   gagc g   uuggcug   acauugaguccgucaaag acaacggcuc a  uu 
cgg    u cuu       acu                  a          a gu   

>ppy-mir-196-2 (-51.20)   [ppy-miR-196-2:25-46]

-ug    - -uc       --c                  A          a ug   
   cucg c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
   |||| |   |||||||   |||||||||||||||||| |||||||||| |  | u
   gagc g   uuggcug   acauugaguccgucaaag acaacggcuc a  uu 
cgg    u cuu       acu                  a          a gu   

>lla-mir-196 (-49.10)   [lla-miR-196:25-46]

-ug    - -uc       --c                  A          a ug   
   cuug c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
   |||| |   |||||||   |||||||||||||||||| |||||||||| |  | u
   gagc g   uuggcug   acauugaguccgucaaag acaacggcuc a  uu 
cgg    u cuu       acu                  a          a gu   

>age-mir-196 (-49.10)   [age-miR-196:25-46]

-ug    - -uc       --c                  A          a ug   
   cuug c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
   |||| |   |||||||   |||||||||||||||||| |||||||||| |  | u
   gagc g   uuggcug   acauugaguccgucaaag acaacggcuc a  uu 
ggg    u cuu       acu                  a          a gu   

>ppa-mir-196 (-51.20)   [ppa-miR-196:25-46]

-ug    - -uc       --c                  A          a ug   
   cucg c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
   |||| |   |||||||   |||||||||||||||||| |||||||||| |  | u
   gagc g   uuggcug   acauugaguccgucaaag acaacggcuc a  uu 
cgg    u cuu       acu                  a          a gu   

>ggo-mir-199a (-43.20)   [ggo-miR-199a:31-53]

aggaa   u  ggaga    -    c   gcC       U        C   --UCa  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| |||     ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca     cc  a
----a   -  -----    a    u   auu       c        -   uguug  gu 

>ppa-mir-199a (-43.20)   [ppa-miR-199a:31-53]

aggaa   u  ggaga    -    c   gcC       U        C   --UCa  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| |||     ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca     cc  a
----a   -  -----    a    u   auu       c        -   uguug  gu 

>ppy-mir-199a (-43.20)   [ppy-miR-199a:31-53]

aggaa   u  ggaga    -    c   gcC       U        C   --UCa  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| |||     ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca     cc  a
----a   -  -----    a    u   auu       c        -   uguug  gu 

>ptr-mir-199a-2 (-43.20)   [ptr-miR-199a-5p:31-53]

aggaa   u  ggaga    -    c   gcC       U        C   --UCa  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| |||     ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca     cc  a
----a   -  -----    a    u   auu       c        -   uguug  gu 

>mml-mir-199a-1 (-43.20)   [mml-miR-199a:31-53]

aggaa   u  ggaga    -    c   gcC       U        C   --UCa  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| |||     ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca     cc  a
----a   -  -----    a    u   auu       c        -   uguug  gu 

>sla-mir-199a (-43.20)   [sla-miR-199a:31-53]

aggaa   u  ggaga    -    c   gcC       U        C   --UCa  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| |||     ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca     cc  a
----a   -  -----    a    u   auu       c        -   uguug  gu 

>lla-mir-199a (-41.10)   [lla-miR-199a:31-53]

aggaagcuucuggagauccu    c   gcC       U        C   --UCa  ac 
                    gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
                    |||| |||   ||||||| |||||||| |||     ||   
                    cggg cag   gguuaca gucugaug aca     cc  a
---------acaagagggaa    u   auu       c        -   uguug  gu 

>mne-mir-199a (-43.20)   [mne-miR-199a:31-53]

aggaa   u  ggaga    -    c   gcC       U        C   --UCa  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| |||     ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca     cc  a
----a   -  -----    a    u   auu       c        -   uguug  gu 

>ptr-mir-204 (-42.26)   [ptr-miR-204:33-54]

ggcuacagucuuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acuug agggaaacgg agggu cgga      a
--------------c   c  u    uua     c          a     -    ggaagu 

>ggo-mir-204 (-42.26)   [ggo-miR-204:33-54]

ggcuacagucuuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acuug agggaaacgg agggu cgga      a
--------------c   c  u    uua     c          a     -    ggaagu 

>ppy-mir-204 (-42.26)   [ppy-miR-204:33-54]

ggcuacagucuuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acuug agggaaacgg agggu cgga      a
--------------c   c  u    uua     c          a     -    ggaagu 

>sla-mir-204 (-42.26)   [sla-miR-204:33-54]

ggcuacagucuuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acuug agggaaacgg agggu cgga      a
--------------c   c  u    uua     c          a     -    ggaagu 

>mne-mir-204 (-42.26)   [mne-miR-204:33-54]

ggcuacagucuuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acuug agggaaacgg agggu cgga      a
--------------c   c  u    uua     c          a     -    ggaagu 

>ppa-mir-204 (-42.26)   [ppa-miR-204:33-54]

ggcuacagucuuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acuug agggaaacgg agggu cgga      a
--------------c   c  u    uua     c          a     -    ggaagu 

>ggo-mir-205 (-49.02)   [ggo-miR-205:34-55]

aaagaucc    acaa       gcuu      UC           C        ucuca 
        ucag    uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        ||||    |||||||    ||||||  ||||||||||| ||||||||     a
        aguc    agguacg    gaggac  gaagugaggug cuuuagac     c
------ac    ---g       ----      uu           a        caacc 

>age-mir-205 (-44.82)   [age-miR-205:34-55]

aaagaucc    gcaa       gcuu      UC           C        ucuca 
        ucgg    uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        ||||    |||||||    ||||||  ||||||||||| ||||||||     a
        aguc    agguacg    gaggac  gaagugaggug cuuuagac     c
------gc    ---g       ----      -u           a        caacc 

>ppa-mir-205 (-49.02)   [ppa-miR-205:34-55]

aaagaucc    acaa       gcuu      UC           C        ucuca 
        ucag    uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        ||||    |||||||    ||||||  ||||||||||| ||||||||     a
        aguc    agguacg    gaggac  gaagugaggug cuuuagac     c
------ac    ---g       ----      uu           a        caacc 

>ptr-mir-205 (-49.02)   [ptr-miR-205:34-55]

aaagaucc    acaa       gcuu      UC           C        ucuca 
        ucag    uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        ||||    |||||||    ||||||  ||||||||||| ||||||||     a
        aguc    agguacg    gaggac  gaagugaggug cuuuagac     c
------ac    ---g       ----      uu           a        caacc 

>lla-mir-205 (-47.22)   [lla-miR-205:34-55]

aaagaucc    gcaa       gcuu      UC           C        ucuca 
        ucgg    uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        ||||    |||||||    ||||||  ||||||||||| ||||||||     a
        aguc    agguacg    gaggac  gaagugaggug cuuuagac     c
------gc    ---g       ----      uu           a        caacc 

>mne-mir-205 (-47.92)   [mne-miR-205:34-55]

aaagaucc    gcaa       gcuu      UC           C        ucuca 
        ucag    uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        ||||    |||||||    ||||||  ||||||||||| ||||||||     a
        aguc    agguacg    gaggac  gaagugaggug cuuuagac     c
------gc    ---g       ----      uu           a        caacc 

>mml-mir-211 (-46.40)   [mml-miR-211:25-46]

uca   -  -----cau     uug     U         CA     U    agg  u 
   cug gc        gugac   ugggc UCCCUUUGU  UCCUU GCCU   gc c
   ||| ||        |||||   ||||| |||||||||  ||||| ||||   || u
   gac cg        cacug   acucg ggggaaacg  aggga cggg   cg g
-ga   a  acacccuu     uug     u         ac     -    --a  a 

>ppy-mir-211 (-39.10)   [ppy-miR-211:26-47]

----ucacccagccau     uug  ga U         CA     C    agg  u 
                gugac   ug  c UCCCUUUGU  UCCUU GCCU   gc c
                |||||   ||  | |||||||||  ||||| ||||   || u
                cacug   ac  g ggggaaacg  aggga cggg   cg g
gaggcacgacacccuu     uug  uc u         ac     -    --a  a 

>mne-mir-211 (-46.40)   [mne-miR-211:25-46]

uca   -  -----cau     uug     U         CA     C    agg  u 
   cug gc        gugac   ugggc UCCCUUUGU  UCCUU GCCU   gc c
   ||| ||        |||||   ||||| |||||||||  ||||| ||||   || u
   gac cg        cacug   acucg ggggaaacg  aggga cggg   cg g
-ga   a  acacccuu     uug     u         ac     -    --a  a 

>ggo-mir-214 (-67.62)   [ggo-miR-214:71-91]

ggccu      acaga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 

>age-mir-214 (-67.62)   [age-miR-214:71-91]

ggccu      acaga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 

>ppa-mir-214 (-67.62)   [ppa-miR-214:71-91]

ggccu      acaga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 

>ppy-mir-214 (-67.62)   [ppy-miR-214:71-91]

ggccu      acaga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 

>ptr-mir-214 (-67.62)   [ptr-miR-214:71-91]

ggccu      acaga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 

>mml-mir-214 (-67.62)   [mml-miR-214:71-91]

ggccu      acaga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 

>sla-mir-214 (-67.62)   [sla-miR-214:71-91]

ggccu      acaga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 

>mne-mir-214 (-67.62)   [mne-miR-214:71-91]

ggccu      acaga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 

>lca-mir-216 (-40.70)   [lca-miR-216:19-39]

----  u     u   ----------     u         CU   A        ---a   u 
    ga ggcug gag          uuggc UAAUCUCAG  GGC ACUGUGag    ugu c
    || ||||| |||          ||||| |||||||||  ||| ||||||||    |||  
    cu ccgau cuu          aaucg auuaggguc  cug ugacacuc    aca a
agca  c     c   uaacgagaca     u         -u   g        ccua   u 

>ptr-mir-216a (-38.00)   [ptr-miR-216a:18-38]

----  u     u   uug    -----------       CU   A        ---a   u 
    ga ggcug gag   gcUU           AUCUCAG  GGC ACUGUGag    ugu c
    || ||||| |||   ||||           |||||||  ||| ||||||||    |||  
    cu ccgau cuu   cgag           uaggguc  cug ugacacuc    aca a
agca  c     c   uaa    acaaaucaaau       -u   g        ccua   u 

>ggo-mir-216 (-40.70)   [ggo-miR-216:19-39]

----  u     u   ----------     u         CU   A        ---a   u 
    ga ggcug gag          uuggc UAAUCUCAG  GGC ACUGUGag    ugu c
    || ||||| |||          ||||| |||||||||  ||| ||||||||    |||  
    cu ccgau cuu          aaucg auuaggguc  cug ugacacuc    aca a
agca  c     c   uaacgagaca     u         -u   g        ccua   u 

>ppy-mir-216 (-40.30)   [ppy-miR-216:19-39]

--------------gauggcugugag     u         CU   A        ---a   u 
                          uuggc UAAUCUCAG  GGC ACUGUGag    ugu c
                          ||||| |||||||||  ||| ||||||||    |||  
                          aaucg auuaggguc  cug ugacacuc    aca a
agcacucccguuccuuuaacgagaca     u         -u   g        ccua   u 

>ppa-mir-216 (-40.70)   [ppa-miR-216:19-39]

----  u     u   ----------     u         CU   A        ---a   u 
    ga ggcug gag          uuggc UAAUCUCAG  GGC ACUGUGag    ugu c
    || ||||| |||          ||||| |||||||||  ||| ||||||||    |||  
    cu ccgau cuu          aaucg auuaggguc  cug ugacacuc    aca a
agca  c     c   uaacgagaca     u         -u   g        ccua   u 

>ggo-mir-217 (-33.40)   [ggo-miR-217:35-58]

aguauaauuauuacaua    uu     c c  a  C     C          U -   aag 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
                 ||||  ||||| | || || ||||| |||||||||| | |||    
                 caaa  cuacg c uc gu acgua uccuugacua c cug   a
--------------gaa    -u     a u  c  u     a          c a   acu 

>ppa-mir-217 (-33.40)   [ppa-miR-217:35-58]

aguauaauuauuacaua    uu     c c  a  C     C          U -   aag 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
                 ||||  ||||| | || || ||||| |||||||||| | |||    
                 caaa  cuacg c uc gu acgua uccuugacua c cug   a
--------------gaa    -u     a u  c  u     a          c a   acu 

>ggo-mir-218 (-42.90)   [ggo-miR-218:25-45]

-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   cu  -  a   a   c      c         cc        -a    agu 

>age-mir-218 (-42.90)   [age-miR-218:25-45]

-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   cu  -  a   a   c      c         cc        -a    agu 

>ppa-mir-218-1 (-42.90)   [ppa-miR-218:25-45]

-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   cu  -  a   a   c      c         cc        -a    agu 

>lca-mir-218 (-44.20)   [lca-miR-218:25-45]

-   au  u  a   a   u      U         CU        gg    -  g 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc ca g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  |||| ||  
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug gu u
a   cu  -  a   a   c      c         cc        -a    a  a 

>ppy-mir-218-1 (-42.90)   [ppy-miR-218:25-45]

-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   cu  -  a   a   c      c         cc        -a    agu 

>ptr-mir-218-1 (-42.90)   [ptr-miR-218:25-45]

-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   cu  -  a   a   c      c         cc        -a    agu 

>sla-mir-218-1 (-42.90)   [sla-miR-218:25-45]

-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   cu  -  a   a   c      c         cc        -a    agu 

>lla-mir-218-1 (-42.90)   [lla-miR-218:25-45]

-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   cu  -  a   a   c      c         cc        -a    agu 

>mne-mir-218-1 (-42.60)   [mne-miR-218:25-45]

-   acaau  a   a   u      U         CU        gg    gag 
 gug     gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||     || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau     cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   -cuuu  a   a   c      c         cc        -a    agu 

>ppa-mir-218-2 (-46.30)   [ppa-miR-218:25-45]

gac   --uc  u    g       uUU         CU        gguggaacga  g 
   cag    gc gcgg gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||    || |||| |||||||   |||||||||  ||||||||          ||  
   guc    cg ugcc cgaaagg   cacgaacug  uugguaca          gc a
-ac   cucu  -    a       cgc         uc        --------ag  a 

>ppy-mir-218-2 (-46.30)   [ppy-miR-218:25-45]

gac   --uc  u    g       uUU         CU        gguggaacga  g 
   cag    gc gcgg gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||    || |||| |||||||   |||||||||  ||||||||          ||  
   guc    cg ugcc cgaaagg   cacgaacug  uugguaca          gc a
-ac   cucu  -    a       cgc         uc        --------ag  a 

>ptr-mir-218-2 (-46.30)   [ptr-miR-218:25-45]

gac   --uc  u    g       uUU         CU        gguggaacga  g 
   cag    gc gcgg gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||    || |||| |||||||   |||||||||  ||||||||          ||  
   guc    cg ugcc cgaaagg   cacgaacug  uugguaca          gc a
-ac   cucu  -    a       cgc         uc        --------ag  a 

>mml-mir-218-2 (-46.30)   [mml-miR-218:25-45]

gac   --uc  u    g       uUU         CU        gguggaacga  g 
   cag    gc gcgg gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||    || |||| |||||||   |||||||||  ||||||||          ||  
   guc    cg ugcc cgaaagg   cacgaacug  uugguaca          gc a
-ac   cucu  -    a       cgc         uc        --------ag  a 

>sla-mir-218-2 (-46.30)   [sla-miR-218:25-45]

gac   --uc  u    a       uUU         CU        gguggaacga  g 
   cag    gc gcgg gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||    || |||| |||||||   |||||||||  ||||||||          ||  
   guc    cg ugcc cgaaagg   cacgaacug  uugguaca          gc a
-ac   cucu  -    a       cgc         uc        --------ag  a 

>lla-mir-218-2 (-46.30)   [lla-miR-218:25-45]

gac   --uc  u    g       uUU         CU        gguggaacga  g 
   cag    gc gcgg gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||    || |||| |||||||   |||||||||  ||||||||          ||  
   guc    cg ugcc cgaaagg   cacgaacug  uugguaca          gc a
-ac   cucu  -    a       cgc         uc        --------ag  a 

>mne-mir-218-2 (-46.30)   [mne-miR-218:25-45]

gac   --uc  u    g       uUU         CU        gguggaacga  g 
   cag    gc gcgg gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||    || |||| |||||||   |||||||||  ||||||||          ||  
   guc    cg ugcc cgaaagg   cacgaacug  uugguaca          gc a
-ac   cucu  -    a       cgc         uc        --------ag  a 

>mml-mir-219-1 (-56.90)   [mml-miR-219:21-41]

ccg    -----------    c       cU   U     A  G         a   uau 
   cccc           gggc gcggcuc  GAU GUCCA AC CAAUUCUcg guc   g
   ||||           |||| |||||||  ||| ||||| || ||||||||| |||   g
   gggg           cccg cgccgag  cug caggu ug guugagagc cgg   c
--g    agcuccaaacc    c       cc   -     c  a         -   ucu 

>ggo-mir-219 (-54.50)   [ggo-miR-219:21-41]

-    c --------c    c       cU   U     A  G         a   uau 
 ccgc c         gggc gcggcuc  GAU GUCCA AC CAAUUCUcg guc   g
 |||| |         |||| |||||||  ||| ||||| || ||||||||| |||   g
 ggcg g         cccg cgccgag  cug caggu ug guugagagc cgg   c
g    a cuccaaacc    c       cc   -     c  a         -   ccu 

>ppy-mir-219 (-54.50)   [ppy-miR-219:21-41]

-    c --------c    c       cU   U     A  G         a   uau 
 ccgc c         gggc gcggcuc  GAU GUCCA AC CAAUUCUcg guc   g
 |||| |         |||| |||||||  ||| ||||| || ||||||||| |||   g
 ggcg g         cccg cgccgag  cug caggu ug guugagagc cgg   c
g    a cuccaaacc    c       cc   -     c  a         -   ccc 

>mml-mir-220a (-34.10)   [mml-miR-220a:23-44]

--gacagcguggcauuguagggcuCCACC       --CU        g    a a 
                             ACCAUGU    GACACUUU ggug g g
                             |||||||    |||||||| |||| | c
                             uggugua    uuguggaa ucgc c a
guagucauucuagguguuccucaaggguc       auac        g    a c 

>ptr-mir-220a (-34.40)   [ptr-miR-220a:23-43]

-ga   cau  ca    -    --c    C  C     -   -      g    a    
   cag   gg  uugu aggg   uCCA AC GUAUC UGA CACUUU ggcg ggg 
   |||   ||  |||| ||||   |||| || ||||| ||| |||||| |||| || c
   guc   uc  ggca uccu   gggu ug cguag acu guggaa ucgu cca 
gua   -au  ua    c    caa    c  a     u   u      g    a    

>ggo-mir-220 (-32.60)   [ggo-miR-220:23-43]

---gacagcguggcauuguagggcuCCACAC  UG  -   -      g    a    
                               CG  UC UGA CACUUU ggcg ggg 
                               ||  || ||| |||||| |||| || c
                               gu  ag acu guggaa ucgu cca 
guagucauucuaggcacuccucaagggucua  gu  u   u      g    a    

>mne-mir-220 (-33.90)   [mne-miR-220:22-43]

---gacagcguggcauuguaggcuCCACC       --CU        g    a a 
                             ACCAUGU    GACACUUU ggug g g
                             |||||||    |||||||| |||| | c
                             uggugua    uuguggaa ucgc c a
guagucauucuagguguuccucaaggguc       auac        g    a c 

>ppa-mir-220 (-34.40)   [ppa-miR-220:23-43]

-ga   cau  ca    -    --c    C  C     -   -      g    a    
   cag   gg  uugu aggg   uCCA AC GUAUC UGA CACUUU ggcg ggg 
   |||   ||  |||| ||||   |||| || ||||| ||| |||||| |||| || c
   guc   uc  ggca uccu   gggu ug cguag acu guggaa ucgu cca 
gua   -au  ua    c    caa    c  a     u   u      g    a    

>mml-mir-221 (-47.20)   [mml-miR-221:65-87]

-u     ----       cugg   a    -  ug   u         auuu    -   c 
  gaaca    uccaggu    ggc ugaa cc  gca acaauguag    cugu guu g
  |||||    |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
  cuugu    aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
cu     acaa       ----   g    U  GU   C         ----    a   a 

>ggo-mir-221 (-47.20)   [ggo-miR-221:65-87]

-u     ----       cugg   a    -  ug   u         auuu    -   c 
  gaaca    uccaggu    ggc ugaa cc  gca acaauguag    cugu guu g
  |||||    |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
  cuugu    aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
cu     acaa       ----   g    U  GU   C         ----    a   a 

>ppy-mir-221 (-47.20)   [ppy-miR-221:65-87]

-u     ----       cugg   a    -  ug   u         auuu    -   c 
  gaaca    uccaggu    ggc ugaa cc  gca acaauguag    cugu guu g
  |||||    |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
  cuugu    aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
cu     acaa       ----   g    U  GU   C         ----    a   a 

>ppa-mir-221 (-47.20)   [ppa-miR-221:65-87]

-u     ----       cugg   a    -  ug   u         auuu    -   c 
  gaaca    uccaggu    ggc ugaa cc  gca acaauguag    cugu guu g
  |||||    |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
  cuugu    aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
cu     acaa       ----   g    U  GU   C         ----    a   a 

>age-mir-222 (-52.80)   [age-miR-222:69-92]

ucugccggaagguguggguaccc    u              -     auc   ucuu 
                       ucag ggcucaguagccag uguag   cug    u
                       |||| |||||||||||||| |||||   |||    u
                       aguC CUGGGUCAUCGGUC ACAUC   gac    g
--------ucgauuuucuacggu    U              U     GAu   uaau 

>mml-mir-223 (-43.10)   [mml-miR-223:68-88]

ccc  ccuccu   -     a    cc u              gaguug       cgu 
   gg      gca gugcc cgcu  g guauuugacaagcu      gacacuc   g
   ||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
   cc      cgu uacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-ga  ---auu   a     c    aC C              ------       aug 

>ptr-mir-223 (-47.90)   [ptr-miR-223:68-88]

c    ccuccu   -     a    cc u              gaguug       cau 
 cugg      gca gugcc cgcu  g guauuugacaagcu      gacacuc   g
 ||||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
 gacc      cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-    ---auu   a     c    aC C              ------       aug 

>ggo-mir-223 (-47.90)   [ggo-miR-223:68-88]

c    ccuccu   -     a    cc u              gaguug       cau 
 cugg      gca gugcc cgcu  g guauuugacaagcu      gacacuc   g
 ||||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
 gacc      cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-    ---auu   a     c    aC C              ------       aug 

>ppy-mir-223 (-47.90)   [ppy-miR-223:68-88]

c    ccuccu   -     a    cc u              gaguua       cgu 
 cugg      gca gugcc cgcu  g guauuugacaagcu      gacacuc   g
 ||||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
 gacc      cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-    ---auu   a     c    aC C              ------       aug 

>sla-mir-223 (-38.70)   [sla-miR-223:68-88]

ccug  cuccu   -   c a    cc u              gaguug       cgu 
    gc     gca gug c cgcu  g guauuugacaagcu      gacacuc   g
    ||     ||| ||| | ||||  | ||||||||||||||      |||||||   u
    cg     cgu cac g guga  C CAUAAACUGUUUGA      CUGUgag   g
--ga  --auu   a   a c    aC C              ------       aug 

>ppa-mir-223 (-47.90)   [ppa-miR-223:68-88]

c    ccuccu   -     a    cc u              gaguug       cau 
 cugg      gca gugcc cgcu  g guauuugacaagcu      gacacuc   g
 ||||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
 gacc      cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-    ---auu   a     c    aC C              ------       aug 

>mml-mir-224 (-36.60)   [mml-miR-224:8-30]

       CA         U   U      A u   ug  u 
gggcuuu  AGUCACUAG GGU CCGUUU g aga  au g
|||||||  ||||||||| ||| |||||| | |||  || u
cccgaaa  ucagugauc ccg gguaaa c uuu  ua g
       ca         -   u      a -   gu  c 

>ptr-mir-224 (-36.60)   [ptr-miR-224:8-30]

       CA         U   U      A u   ug  u 
gggcuuu  AGUCACUAG GGU CCGUUU g aga  au g
|||||||  ||||||||| ||| |||||| | |||  || u
cccgaaa  ucagugauc ccg gguaaa c uuu  ua g
       ca         -   u      a -   gu  c 

>ggo-mir-224 (-36.60)   [ggo-miR-224:8-30]

       CA         U   U      A u   ug  u 
gggcuuu  AGUCACUAG GGU CCGUUU g aga  au g
|||||||  ||||||||| ||| |||||| | |||  || u
cccgaaa  ucagugauc ccg gguaaa c uuu  ua g
       ca         -   u      a -   gu  c 

>ppy-mir-224 (-36.60)   [ppy-miR-224:8-30]

       CA         U   U      A u   ug  u 
gggcuuu  AGUCACUAG GGU CCGUUU g aga  au g
|||||||  ||||||||| ||| |||||| | |||  || u
cccgaaa  ucagugauc ccg gguaaa c uuu  ua g
       ca         -   u      a -   gu  c 

>mne-mir-224 (-36.60)   [mne-miR-224:8-30]

       CA         U   U      A u   ug  u 
gggcuuu  AGUCACUAG GGU CCGUUU g aga  au g
|||||||  ||||||||| ||| |||||| | |||  || u
cccgaaa  ucagugauc ccg gguaaa c uuu  ua g
       ca         -   u      a -   gu  c 

>ppa-mir-224 (-36.60)   [ppa-miR-224:8-30]

       CA         U   U      A u   ug  u 
gggcuuu  AGUCACUAG GGU CCGUUU g aga  au g
|||||||  ||||||||| ||| |||||| | |||  || u
cccgaaa  ucagugauc ccg gguaaa c uuu  ua g
       ca         -   u      a -   gu  c 

>ptr-mir-197 (-42.40)   [ptr-miR-197:48-69]

        c    a       ca    ga   -   a 
ggcugugc gggu gagaggg  gugg  ggu aag g
|||||||| |||| |||||||  ||||  ||| |||  
ccgguaCG CCCA CUCUUCC  CACU  cca uuc c
        A    C       AC    Uc   c   u 

>ppy-mir-197 (-42.40)   [ppy-miR-197:48-69]

        c    a       ca    ga   -   a 
ggcugugc gggu gagaggg  gugg  ggu aag g
|||||||| |||| |||||||  ||||  ||| |||  
ccgguaCG CCCA CUCUUCC  CACU  cca uuc c
        A    C       AC    Uc   c   u 

>mne-mir-197 (-48.50)   [mne-miR-197:48-69]

             a       ca    ga   -   a 
ggcugugccgggu gagaggg  gugg  ggu aag g
||||||||||||| |||||||  ||||  ||| |||  
ccgguaCGGCCCA CUCUUCC  CACU  cca uuc c
             C       AC    Uc   c   u 

>age-mir-197 (-42.40)   [age-miR-197:48-69]

        c    a       ca    ga   -   a 
ggcugugc gggu gagaggg  gugg  ggu aag g
|||||||| |||| |||||||  ||||  ||| |||  
ccgguaCG CCCA CUCUUCC  CACU  cca uuc c
        A    C       AC    Uc   c   u 

>ppa-mir-197 (-42.40)   [ppa-miR-197:48-69]

        c    a       ca    ga   -   a 
ggcugugc gggu gagaggg  gugg  ggu aag g
|||||||| |||| |||||||  ||||  ||| |||  
ccgguaCG CCCA CUCUUCC  CACU  cca uuc c
        A    C       AC    Uc   c   u 

>ggo-mir-198 (-15.44)   [ggo-miR-198:6-24]

     -GG  CAG        U   uuccug 
ucauu   UC   AGGGGAGA AGG      u
|||||   ||   |||||||| |||       
aguaa   ag   ucucuucu ucc      g
     aua  aua        -   uuuuua 

>age-mir-198 (-10.40)   [age-miR-198:6-24]

--------  -  u  UCC        ---G -   G 
        uc ac GG   AGAGGGGA    C UAG u
        || || ||   ||||||||    | |||  
        ag ug cu   ucuuccuu    g guc a
aguaaaua  a  u  -uu        uuua u   c 

>ppa-mir-198 (-16.34)   [ppa-miR-198:6-24]

     -GG  C G        U   uuccug 
ucauu   UC A AGGGGAGA AGG      u
|||||   || | |||||||| |||       
aguaa   ag u ucucuucu ucc      g
     aua  a g        -   uuuuua 

>ppy-mir-198 (-16.34)   [ppy-miR-198:6-24]

     -GG  C G        U   uuccug 
ucauu   UC A AGGGGAGA AGG      u
|||||   || | |||||||| |||       
aguaa   ag u ucucuucu ucc      g
     aua  a g        -   uuuuua 

>ptr-mir-198 (-16.34)   [ptr-miR-198:6-24]

     -GG  C G        U   uuccug 
ucauu   UC A AGGGGAGA AGG      u
|||||   || | |||||||| |||       
aguaa   ag u ucucuucu ucc      g
     aua  a g        -   uuuuua 

>mml-mir-198 (-16.20)   [mml-miR-198:6-24]

     -GG  --          ---------    G 
ucauu   UC  CAGAGGGGAA         AUAG u
|||||   ||  ||||||||||         ||||  
aguaa   ag  gucucuucuu         uguc u
     aua  au          ccuuuuuag    c 

>sla-mir-198 (-10.72)   [sla-miR-198:6-24]

     -GG  --          CUC  uaccu 
ucauu   UC  CAGAGGGGAG   GA     g
|||||   ||  ||||||||||   ||     u
aguaa   ag  gucuuuucuu   cu     g
     aua  au          --c  uuuua 

>lla-mir-198 (-9.94)   [lla-miR-198:6-24]

------uca   GUC         GCU   uacuug 
         cuG   CAGAAGGGA   AGG      u
         |||   |||||||||   |||       
         gau   gucuuuucu   ucc      g
aguaaauaa   ---         ---   uuuuua 

>mne-mir-198 (-16.20)   [mne-miR-198:6-24]

     -GG  --          ---------    G 
ucauu   UC  CAGAGGGGAA         AUAG u
|||||   ||  ||||||||||         ||||  
aguaa   ag  gucucuucuu         uguc u
     aua  au          ccuuuuuag    c 

>ptr-mir-30c-2 (-25.24)   [ptr-miR-30c:7-29]

   uacU       U   ACA         guggaa 
aga    GUAAACA CCU   CUCUCAGCu      a
|||    ||||||| |||   |||||||||       
ucu    cauuugu gga   gagggucga      g
   uucu       c   --a         aagaau 

>lla-mir-30c (-25.24)   [lla-miR-30c:7-29]

   uacU       U   ACA         guggaa 
aga    GUAAACA CCU   CUCUCAGCu      a
|||    ||||||| |||   |||||||||       
ucu    cauuugu gga   gagggucga      g
   uucu       c   --a         aagaau 

>mne-mir-30c (-25.24)   [mne-miR-30c:7-29]

   uacU       U   ACA         guggaa 
aga    GUAAACA CCU   CUCUCAGCu      a
|||    ||||||| |||   |||||||||       
ucu    cauuugu gga   gagggucga      g
   uucu       c   --a         aagaau 

>ptr-mir-30d (-28.10)   [ptr-miR-30d:6-27]

guu  U         CCC           gua  ac 
   gu GUAAACAUC   GACUGGAAGcu   ag  a
   || |||||||||   |||||||||||   ||   
   cg cguuuguag   cugacuuucga   uc  c
cau  u         --a           --a  ga 

>ggo-mir-30d (-28.10)   [ggo-miR-30d:6-27]

guu  U         CCC           gua  ac 
   gu GUAAACAUC   GACUGGAAGcu   ag  a
   || |||||||||   |||||||||||   ||   
   cg cguuuguag   cugacuuucga   uc  c
cau  u         --a           --a  ga 

>mne-mir-30d (-28.10)   [mne-miR-30d:6-27]

guu  U         CCC           gua  ac 
   gu GUAAACAUC   GACUGGAAGcu   ag  a
   || |||||||||   |||||||||||   ||   
   cg cguuuguag   cugacuuucga   uc  c
cau  u         --a           --a  ga 

>ppa-mir-30d (-28.10)   [ppa-miR-30d:6-27]

guu  U         CCC           gua  ac 
   gu GUAAACAUC   GACUGGAAGcu   ag  a
   || |||||||||   |||||||||||   ||   
   cg cguuuguag   cugacuuucga   uc  c
cau  u         --a           --a  ga 

>ppa-mir-1 (-35.64)   [ppa-miR-1:53-73]

a      c                     ac     ugaaca 
 ccuacu agaguacauacuucuuuaugu  ccaua      u
 |||||| |||||||||||||||||||||  |||||       
 ggaugg uuuuAUGUAUGAAGAAAUGUA  GGUau      a
c      u                     -A     cguaac 

>mml-mir-181a-1 (-38.30)   [mml-miR-181a:24-46] [mml-miR-181a*:64-85]

-u    -uu   -    -   uc  u A   U      CU       A    g  au 
  gagu   uga gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu ga  u
  ||||   ||| |||| |||  || | ||| ||||||  ||||||| |||| ||  a
  cuca   acu ccaa cgg  uc C UGU AGUUGC  CAGCUAC CAaa cu  a
ac    ucu   a    u   ua  C A   U      --       -    a  aa 

>mml-mir-181b-1 (-34.40)   [mml-miR-181b:36-59]

ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUU   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     guaaguaac   agucacucga   ga g
-------------------uucgcc       -caac         --a          aca  u 

>ptr-mir-181a-1 (-38.30)   [ptr-miR-181a:24-46] [ptr-miR-181a*:64-85]

-u    -uu   -    -   uc  u A   U      CU       A    g  au 
  gagu   uga gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu ga  u
  ||||   ||| |||| |||  || | ||| ||||||  ||||||| |||| ||  a
  cuca   acu ccaa cgg  uc C UGU AGUUGC  CAGCUAC CAaa cu  a
ac    ucu   a    u   ua  C A   U      --       -    a  aa 

>ptr-mir-181b-1 (-34.00)   [ptr-miR-181b:36-58]

ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUu   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     guaaguaac   agucacucga   gg g
---------------------cgcc       -caac         --a          aca  u 

>ppy-mir-181a-1 (-38.30)   [ppy-miR-181a:24-46] [ppy-miR-181a*:64-85]

-u    -uu   -    -   uc  u A   U      CU       A    g  au 
  gagu   uga gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu ga  u
  ||||   ||| |||| |||  || | ||| ||||||  ||||||| |||| ||  a
  cuca   acu ccaa cgg  uc C UGU AGUUGC  CAGCUAC CAaa cu  a
ac    ucu   a    u   ua  C A   U      --       -    a  aa 

>ppy-mir-181b (-35.10)   [ppy-miR-181b:36-58]

ccugugcagagauuauuguuuaaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUu   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     guaaguaac   agucacucga   gg g
-------------------uucgcc       -caac         --a          aca  u 

>ggo-mir-181a-1 (-36.40)   [ggo-miR-181a:24-46] [ggo-miR-181a*:64-85]

-u   -uuu   -    -   uc  u A   U      CU       A    g  au 
  gag    uga gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu ga  u
  |||    ||| |||| |||  || | ||| ||||||  ||||||| |||| ||  a
  cuc    acu ccaa cgg  uc C UGU AGUUGC  CAGCUAC CAaa cu  a
ac   uucu   a    u   ua  C A   U      --       -    a  aa 

>ggo-mir-181b (-34.90)   [ggo-miR-181b:36-59]

ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUU   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     guaaguaac   agucacucga   gg g
-------------------uucgcc       -caac         --a          aca  u 

>lla-mir-181a-1 (-38.30)   [lla-miR-181a:24-46] [lla-miR-181a*:64-85]

-u    -uu   -    -   uc  u A   U      CU       A    g  au 
  gagu   uga gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu ga  u
  ||||   ||| |||| |||  || | ||| ||||||  ||||||| |||| ||  a
  cuca   acu ccaa cgg  uc C UGU AGUUGC  CAGCUAC CAaa cu  a
ac    ucu   a    u   ua  C A   U      --       -    a  aa 

>lla-mir-181b (-34.90)   [lla-miR-181b:36-59]

ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUU   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     guaaguaac   agucacucga   gg g
-------------------uucgcc       -caac         --a          aca  u 

>mne-mir-181a-1 (-38.30)   [mne-miR-181a:24-46] [mne-miR-181a*:64-85]

-u    -uu   -    -   uc  u A   U      CU       A    g  au 
  gagu   uga gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu ga  u
  ||||   ||| |||| |||  || | ||| ||||||  ||||||| |||| ||  a
  cuca   acu ccaa cgg  uc C UGU AGUUGC  CAGCUAC CAaa cu  a
ac    ucu   a    u   ua  C A   U      --       -    a  aa 

>mne-mir-181b (-34.40)   [mne-miR-181b:36-59]

ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUU   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     guaaguaac   agucacucga   ga g
-------------------uucgcc       -caac         --a          aca  u 

>ppa-mir-181a-1 (-38.30)   [ppa-miR-181a:24-46] [ppa-miR-181a*:64-85]

-u    -uu   -    -   uc  u A   U      CU       A    g  au 
  gagu   uga gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu ga  u
  ||||   ||| |||| |||  || | ||| ||||||  ||||||| |||| ||  a
  cuca   acu ccaa cgg  uc C UGU AGUUGC  CAGCUAC CAaa cu  a
ac    ucu   a    u   ua  C A   U      --       -    a  aa 

>ppa-mir-181b (-34.90)   [ppa-miR-181b:36-59]

ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUU   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     guaaguaac   agucacucga   gg g
-------------------uucgcc       -caac         --a          aca  u 

>age-mir-15a (-30.74)   [age-miR-15a:14-35]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       c  cgucgugu  uaccggacgu  aa a
     auaaaaa uc        ua          gg  a 

>age-mir-16 (-37.70)   [age-miR-16:14-35]

      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 

>ggo-mir-15a (-30.74)   [ggo-miR-15a:14-35]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       c  cgucgugu  uaccggacgu  aa a
     auaaaaa uc        ua          gg  a 

>ggo-mir-16 (-37.70)   [ggo-miR-16:14-35]

      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 

>mne-mir-15a (-30.74)   [mne-miR-15a:14-35]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       c  cgucgugu  uaccggacgu  aa a
     auaaaaa uc        ua          gg  a 

>mne-mir-16 (-37.70)   [mne-miR-16:14-35]

      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 

>sla-mir-15a (-30.74)   [sla-miR-15a:14-35]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       c  cgucgugu  uaccggacgu  aa a
     auaaaaa uc        ua          gg  a 

>sla-mir-16 (-37.70)   [sla-miR-16:14-35]

      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 

>ppa-mir-15a (-30.74)   [ppa-miR-15a:14-35]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       c  cgucgugu  uaccggacgu  aa a
     auaaaaa uc        ua          gg  a 

>ppa-mir-16 (-37.70)   [ppa-miR-16:14-35]

      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 

>lca-mir-15a (-30.74)   [lca-miR-15a:14-35]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       c  cgucgugu  uaccggacgu  aa a
     auaaaaa uc        ua          gg  a 

>lca-mir-16 (-8.60)   [lca-miR-16:14-35]

guca     ---gc     C  CAC    AUA    U  u 
    gcagu     cuUAG AG   GUAA   UUGG Gu a
    |||||     ||||| ||   ||||   |||| ||  
    uguca     gaauc uc   uauu   aauc ua a
gccg     auuau     -  ---    -aa    u  g 

>mml-mir-15a (-30.74)   [mml-miR-15a:14-35]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       c  cgucgugu  uaccggacgu  aa a
     auaaaaa uc        ua          gg  a 

>mml-mir-16-1 (-37.70)   [mml-miR-16:14-35]

      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 

>ppy-mir-15a (-30.74)   [ppy-miR-15a:14-35]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       c  cgucgugu  uaccggacgu  aa a
     auaaaaa uc        ua          gg  a 

>ppy-mir-16 (-37.70)   [ppy-miR-16:14-33]

      ag   c          -  A        c u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG g uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 

>ptr-mir-15a (-30.74)   [ptr-miR-15a:14-35]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       c  cgucgugu  uaccggacgu  aa a
     auaaaaa uc        ua          gg  a 

>ptr-mir-16-1 (-37.70)   [ptr-miR-16:14-35]

      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 

>lla-mir-15a (-30.74)   [lla-miR-15a:14-35]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       c  cgucgugu  uaccggacgu  aa a
     auaaaaa uc        ua          gg  a 

>lla-mir-16 (-37.00)   [lla-miR-16:14-35]

      ag   c          -  A        C c   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
cgguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 

>ggo-mir-17 (-34.30)   [ggo-miR-17-5p:14-37] [ggo-miR-17-3p:51-70]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

>ggo-mir-18 (-22.00)   [ggo-miR-18:6-27]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAg ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cgg  uucc cgu  auc cguc auc ac  u a
a   uc    u   ga   c    -   u  ga u 

>ggo-mir-19a (-39.10)   [ggo-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>ggo-mir-20 (-31.00)   [ggo-miR-20:8-29]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAg ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>ggo-mir-19b-1 (-38.42)   [ggo-miR-19b:54-76]

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>ggo-mir-92-1 (-36.20)   [ggo-miR-92:48-69]

---cu   uac            c   u           uu 
     uuc   acagguugggau ggu gcaaugcugug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 

>lca-mir-17 (-34.30)   [lca-miR-17-5p:14-37] [lca-miR-17-3p:51-70]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

>lca-mir-18 (-22.00)   [lca-miR-18:6-27]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAg ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cgg  uucc cgu  auc cguc auc ac  u a
a   uc    u   ga   c    -   u  ga u 

>lca-mir-19a (-39.10)   [lca-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>lca-mir-20 (-27.40)   [lca-miR-20:8-29]

    c   -A          A      G   -  uu 
guag acU  AAGUGCUUAU GUGCAG UAg ug  u
|||| |||  |||||||||| |||||| ||| ||   
cguc uga  uucacgagua uacguc auc au  a
    a   aa          c      -   u  ug 

>lca-mir-19b-1 (-38.42)   [lca-miR-19b:54-76]

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     a
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>lca-mir-92-1 (-36.20)   [lca-miR-92:48-69]

---cu   uac            c   u           uu 
     uuc   acagguugggau ggu gcaaugcugug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 

>age-mir-17 (-34.30)   [age-miR-17-5p:14-37] [age-miR-17-3p:51-70]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

>age-mir-18 (-22.00)   [age-miR-18:6-27]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAg ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cgg  uucc cgu  auc cguc auc ac  u a
a   uc    u   ga   c    -   u  ga u 

>age-mir-19a (-39.10)   [age-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    ac 

>age-mir-20 (-31.00)   [age-miR-20:8-29]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAg ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>age-mir-19b-1 (-38.42)   [age-miR-19b:54-76]

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>age-mir-92-1 (-36.20)   [age-miR-92:48-69]

---cu   uac            c   u           uu 
     uuc   acagguugggau ggu gcaaugcugug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 

>ppa-mir-17 (-34.30)   [ppa-miR-17-5p:14-37] [ppa-miR-17-3p:51-70]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

>ppa-mir-18 (-22.00)   [ppa-miR-18:6-27]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAg ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cgg  uucc cgu  auc cguc auc ac  u a
a   uc    u   ga   c    -   u  ga u 

>ppa-mir-19a (-39.10)   [ppa-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>ppa-mir-20 (-31.00)   [ppa-miR-20:8-29]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAg ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>ppa-mir-19b-1 (-38.42)   [ppa-miR-19b:54-76]

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>ppa-mir-92-1 (-36.20)   [ppa-miR-92:48-69]

---cu   uac            c   u           uu 
     uuc   acagguugggau ggu gcaaugcugug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 

>ppy-mir-17 (-34.30)   [ppy-miR-17-5p:14-37] [ppy-miR-17-3p:51-70]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  c
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

>ppy-mir-18 (-22.00)   [ppy-miR-18:6-27]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAg ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cgg  uucc cgu  auc cguc auc ac  u a
a   uc    u   ga   c    -   u  ga u 

>ppy-mir-19a (-39.10)   [ppy-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>ppy-mir-20 (-31.00)   [ppy-miR-20:8-29]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAg ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>ppy-mir-19b-1 (-38.42)   [ppy-miR-19b:54-76]

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>ppy-mir-92-1 (-36.20)   [ppy-miR-92:48-69]

---cu   uac            c   u           uu 
     uuc   acagguugggau ggu gcaaugcugug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 

>ptr-mir-17 (-34.30)   [ptr-miR-17-5p:14-37] [ptr-miR-17-3p:51-70]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

>ptr-mir-18a (-22.00)   [ptr-miR-18a:6-27]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAg ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cgg  uucc cgu  auc cguc auc ac  u a
a   uc    u   ga   c    -   u  ga u 

>ptr-mir-19a (-39.10)   [ptr-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>ptr-mir-20a (-31.00)   [ptr-miR-20a:8-29]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAg ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>ptr-mir-19b-1 (-38.42)   [ptr-miR-19b:54-76]

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>ptr-mir-92-1 (-36.20)   [ptr-miR-92:48-69]

---cu   uac            c   u           uu 
     uuc   acagguugggau ggu gcaaugcugug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 

>mml-mir-17 (-34.30)   [mml-miR-17-5p:14-37] [mml-miR-17-3p:51-70]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

>mml-mir-18 (-22.00)   [mml-miR-18:6-27]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAg ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cgg  uucc cgu  auc cguc auc ac  u a
a   uc    u   ga   c    -   u  ga u 

>mml-mir-19a (-39.10)   [mml-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>mml-mir-20a (-31.00)   [mml-miR-20a:8-29]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAg ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>mml-mir-19b-1 (-38.42)   [mml-miR-19b:54-76]

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>mml-mir-92a-1 (-36.20)   [mml-miR-92a:48-69]

---cu   uac            c   u           uu 
     uuc   acagguugggau ggu gcaaugcugug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 

>sla-mir-17 (-34.30)   [sla-miR-17-5p:14-37] [sla-miR-17-3p:51-70]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

>sla-mir-18 (-22.00)   [sla-miR-18:6-27]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAg ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cgg  uucc cgu  auc cguc auc ac  u a
a   uc    u   ga   c    -   u  ga u 

>sla-mir-19a (-39.10)   [sla-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>sla-mir-20 (-31.00)   [sla-miR-20:8-29]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAg ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>sla-mir-19b-1 (-38.42)   [sla-miR-19b:54-76]

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>sla-mir-92-1 (-36.20)   [sla-miR-92:48-69]

---cu   uac            c   u           uu 
     uuc   acagguugggau ggu gcaaugcugug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 

>lla-mir-17 (-34.30)   [lla-miR-17-5p:14-37] [lla-miR-17-3p:51-70]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

>lla-mir-18 (-22.00)   [lla-miR-18:6-27]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAg ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cgg  uucc cgu  auc cguc auc ac  u a
a   uc    u   ga   c    -   u  ga u 

>lla-mir-19a (-39.10)   [lla-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    ac 

>lla-mir-20 (-31.00)   [lla-miR-20:8-29]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAg ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>lla-mir-19b-1 (-38.42)   [lla-miR-19b:54-76]

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>lla-mir-92-1 (-36.20)   [lla-miR-92:48-69]

---cu   uac            c   u           uu 
     uuc   acagguugggau ggu gcaaugcugug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 

>mne-mir-17 (-34.30)   [mne-miR-17-5p:14-37] [mne-miR-17-3p:51-70]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

>mne-mir-18 (-22.00)   [mne-miR-18:6-27]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAg ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cgg  uucc cgu  auc cguc auc ac  u a
a   uc    u   ga   c    -   u  ga u 

>mne-mir-19a (-39.90)   [mne-miR-19a:49-71]

    u  u                 --      ---    gg 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>mne-mir-20 (-31.00)   [mne-miR-20:8-29]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAg ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>mne-mir-19b-1 (-38.42)   [mne-miR-19b:54-76]

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>mml-mir-194-1 (-38.30)   [mml-miR-194:15-36]

a    - uu      U         A      G    cu  gu 
 uggu g  aucaag GUAACAGCA CUCCAU UGGA  gu  a
 |||| |  |||||| ||||||||| |||||| ||||  ||   
 acca u  uaguuu cauugucgu gaggug accu  ua  c
a    u gg      u         a      -    -u  ac 

>mml-mir-215 (-31.70)   [mml-miR-215:27-47]

aucauuaa   a      ------      a A  A    -U   U         cu  ag 
        gaa ugguau      acagga a UG CCUA  GAA UGACAGACa  au  c
        ||| ||||||      |||||| | || ||||  ||| |||||||||  ||   
        cuu aucgug      ugucuu u ac ggau  cuu acugucugu  ug  u
------aa   c      ucagua      a a  c    uu   u         -u  ag 

>ptr-mir-194 (-38.30)   [ptr-miR-194:15-36]

a    - uu      U         A      G    cu  gu 
 uggu g  aucaag GUAACAGCA CUCCAU UGGA  gu  a
 |||| |  |||||| ||||||||| |||||| ||||  ||   
 acca u  uaguuu cauugucgu gaggug accu  ua  c
a    u gg      u         a      -    -u  ac 

>ptr-mir-215 (-32.70)   [ptr-miR-215:27-47]

aucauuca   a      ------      a A  A    -U   U          uaua 
        gaa ugguau      acggga a UG CCUA  GAA UGACAGACaa    g
        ||| ||||||      |||||| | || ||||  ||| ||||||||||    c
        cuu aucgug      ugucuu u ac ggau  cuu acugucuguu    u
------aa   c      ucagua      a a  c    uu   u          ugag 

>ppy-mir-194 (-35.90)   [ppy-miR-194:15-36]

a    - uu      U         A      G    cu  gu 
 uggu g  aucaag GUAACAGCA CUCCAU UGGA  gu  a
 |||| |  |||||| ||||||||| |||||| ||||  ||   
 acca u  uaguuu cauuguugu gaggug accu  ua  c
a    u gg      u         a      -    -u  ac 

>ppy-mir-215 (-34.30)   [ppy-miR-215:27-47]

aucauuca   a      ------      a A  A    -U   U          u  ag 
        gaa ugguau      acagga a UG CCUA  GAA UGACAGACaa ac  c
        ||| ||||||      |||||| | || ||||  ||| |||||||||| ||   
        cuu aucgug      ugucuu u ac ggau  cuu acugucuguu ug  u
------aa   c      ucaaca      a a  c    uu   u          -  ag 

>ggo-mir-194 (-38.30)   [ggo-miR-194:15-36]

a    - uu      U         A      G    cu  gu 
 uggu g  aucaag GUAACAGCA CUCCAU UGGA  gu  a
 |||| |  |||||| ||||||||| |||||| ||||  ||   
 acca u  uaguuu cauugucgu gaggug accu  ua  c
a    u gg      u         a      -    -u  ac 

>ggo-mir-215 (-28.90)   [ggo-miR-215:27-47]

aucauuca   a      ------      a A  AC   -U   U          uaua 
        gaa ugguau      acggga a UG  CUA  GAA UGACAGACaa    g
        ||| ||||||      |||||| | ||  |||  ||| ||||||||||    c
        cuu aucgug      ugucuu u ac  gau  cuu acugucuguu    u
------aa   c      ucagua      a a  ca   uu   u          ugag 

>mne-mir-194 (-38.30)   [mne-miR-194:15-36]

a    - uu      U         A      G    cu  gu 
 uggu g  aucaag GUAACAGCA CUCCAU UGGA  gu  a
 |||| |  |||||| ||||||||| |||||| ||||  ||   
 acca u  uaguuu cauugucgu gaggug accu  ua  c
a    u gg      u         a      -    -u  ac 

>mne-mir-215 (-31.70)   [mne-miR-215:27-47]

aucauuaa   a      ------      a A  A    -U   U         cu  ag 
        gaa ugguau      acagga a UG CCUA  GAA UGACAGACa  au  c
        ||| ||||||      |||||| | || ||||  ||| |||||||||  ||   
        cuu aucgug      ugucuu u ac ggau  cuu acugucugu  ug  u
------aa   c      ucagua      a a  c    uu   u         -u  ag 

>age-mir-194 (-38.30)   [age-miR-194:15-36]

a    - uu      U         A      G    cu  gu 
 uggu g  aucaag GUAACAGCA CUCCAU UGGA  gu  a
 |||| |  |||||| ||||||||| |||||| ||||  ||   
 acca u  uaguuu cauugucgu gaggug accu  ua  c
a    u gg      u         a      -    -u  ac 

>ggo-mir-23a (-33.20)   [ggo-miR-23a:45-65]

  c   c     -       g    g      cuuc 
gg cgg ugggg uuccugg gaug gauuug    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 

>ggo-mir-27a (-37.50)   [ggo-miR-27a:51-72]

   a  a  a         ug  u       g  u cac 
cug gg gc gggcuuagc  cu gugagca gg c   a
||| || || |||||||||  || ||||||| || |    
gac cc CG CUUGAAUCG  GA CACUUgu cu g   c
   c  C  C         GU  -       g  - aac 

>ggo-mir-24 (-27.30)   [ggo-miR-24:50-71]

     cc   cg   -cu         --aa      u 
cucug  ucc  ugc   acugagcug    acacag u
|||||  |||  |||   |||||||||    |||||| g
ggGAC  AGG  ACG   UGACUCGGU    uguguu g
     -A   --   ACU         caca      u 

>age-mir-23a (-34.00)   [age-miR-23a:45-65]

  c   c     -       g    g      c  c 
gg cgg ugggg uuccugg gaug gauuug ug c
|| ||| ||||| ||||||| |||| |||||| || u
cc gcc aCCUU AGGGACC UUAC CUAaac ac a
  a   a     U       G    A      -  u 

>age-mir-27a (-37.10)   [age-miR-27a:51-72]

   a  a  a         ug  u       -----g  uu 
cug gg gc gggcuuagc  cu gugagca      gg  c
||| || || |||||||||  || |||||||      ||   
gac cc CG CUUGAAUCG  GA CACUUgu      cc  a
   c  C  C         GU  -       acugaa  uc 

>ppa-mir-23a (-33.20)   [ppa-miR-23a:45-65]

  c   c     -       g    g      cuuc 
gg cgg ugggg uuccugg gaug gauuug    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 

>ppa-mir-27a (-37.50)   [ppa-miR-27a:51-72]

   a  a  a         ug  u       g  u cac 
cug gg gc gggcuuagc  cu gugagca gg c   a
||| || || |||||||||  || ||||||| || |    
gac cc CG CUUGAAUCG  GA CACUUgu cu g   c
   c  C  C         GU  -       g  - aac 

>ppa-mir-24-2 (-27.30)   [ppa-miR-24:50-71]

     cc   cg   -cu         --aa      u 
cucug  ucc  ugc   acugagcug    acacag u
|||||  |||  |||   |||||||||    |||||| g
ggGAC  AGG  ACG   UGACUCGGU    uguguu g
     -A   --   ACU         caca      u 

>lca-mir-23a (-33.20)   [lca-miR-23a:45-65]

  c   c     -       g    g      cuac 
gg cgg ugggg uuccugg gaug gauuug    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acua 

>lca-mir-27a (-37.00)   [lca-miR-27a:51-72]

   a  a  a         ug  u       -----g   c 
cug gg gc gggcuuagc  cu gugagca      ggu c
||| || || |||||||||  || |||||||      |||  
ggc cc CG CUUGAAUCG  GA CACUUgu      cca a
   c  C  C         GU  -       acuaaa   c 

>ppy-mir-23a (-33.20)   [ppy-miR-23a:45-65]

  c   c     -       g    g      cuuc 
gg cgg ugggg uuccugg gaug gauuug    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 

>ppy-mir-27a (-36.60)   [ppy-miR-27a:51-72]

   a  a  a         ug  u       -----g   c 
cug gg gc gggcuuagc  cu gugagca      ggu c
||| || || |||||||||  || |||||||      |||  
gac cc CG CUUGAAUCG  GA CACUUgu      cca a
   c  C  C         GU  -       guugaa   c 

>ppy-mir-24-2 (-27.30)   [ppy-miR-24:50-71]

     cc   cg   -cu         --aa      u 
cucug  ucc  ugc   acugagcug    acacag u
|||||  |||  |||   |||||||||    |||||| g
ggGAC  AGG  ACG   UGACUCGGU    uguguu g
     -A   --   ACU         caca      u 

>ptr-mir-23a (-33.20)   [ptr-miR-23a:45-65]

  c   c     -       g    g      cuuc 
gg cgg ugggg uuccugg gaug gauuug    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 

>ptr-mir-27a (-37.50)   [ptr-miR-27a:51-72]

   a  a  a         ug  u       g  u cac 
cug gg gc gggcuuagc  cu gugagca gg c   a
||| || || |||||||||  || ||||||| || |    
gac cc CG CUUGAAUCG  GA CACUUgu cu g   c
   c  C  C         GU  -       g  - aac 

>ptr-mir-24-2 (-27.30)   [ptr-miR-24:50-71]

     cc   cg   -cu         --aa      u 
cucug  ucc  ugc   acugagcug    acacag u
|||||  |||  |||   |||||||||    |||||| g
ggGAC  AGG  ACG   UGACUCGGU    uguguu g
     -A   --   ACU         caca      u 

>mml-mir-23a (-33.20)   [mml-miR-23a:45-65]

  c   c     -       g    g      cuuc 
gg cgg ugggg uuccugg gaug gauuug    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 

>mml-mir-27a (-37.50)   [mml-miR-27a:51-72]

   a  a  a         ug  u       g  u cac 
cug gg gc gggcuuagc  cu gugagca gg c   a
||| || || |||||||||  || ||||||| || |    
gac cc CG CUUGAAUCG  GA CACUUgu cu g   c
   c  C  C         GU  -       g  - aac 

>mml-mir-24-2 (-26.10)   [mml-miR-24:50-71]

cucugcc   c  g   a         aaca    ug  u 
       ucc gu ccu cugagcuga    cagu  gu u
       ||| || ||| |||||||||    ||||  ||  
       agG CA GGA GACUUGACU    GUca  cg g
-------   A  A   C         --CG    ca  u 

>sla-mir-23a (-34.00)   [sla-miR-23a:45-65]

  c   c     -       g    g      c  c 
gg cgg ugggg uuccugg gaug gauuug ug c
|| ||| ||||| ||||||| |||| |||||| || u
cc gcc aCCUU AGGGACC UUAC CUAaac ac a
  a   a     U       G    A      -  u 

>sla-mir-27a (-37.10)   [sla-miR-27a:51-72]

   a  a  a         ug  u       -----g  uu 
cug gg gc gggcuuagc  cu gugagca      gg  c
||| || || |||||||||  || |||||||      ||   
gac cc CG CUUGAAUCG  GA CACUUgu      cc  a
   c  C  C         GU  -       acugaa  uc 

>mne-mir-23a (-33.20)   [mne-miR-23a:45-65]

  c   c     -       g    g      cuuc 
gg cgg ugggg uuccugg gaug gauuug    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 

>mne-mir-27a (-36.10)   [mne-miR-27a:51-72]

   a  -a  a         ug  u       g  u cac 
cug gg  gc gggcuuagc  cu gugagca gg c   a
||| ||  || |||||||||  || ||||||| || |    
gac cc  CG CUUGAAUCG  GA CACUUgu cu g   c
   c  cC  C         GU  -       g  - aac 

>mne-mir-24-2 (-26.10)   [mne-miR-24:50-71]

cucugcc   c  g   a         aaca    ug  u 
       ucc gu ccu cugagcuga    cagu  gu u
       ||| || ||| |||||||||    ||||  ||  
       agG CA GGA GACUUGACU    GUca  cg g
-------   A  A   C         --CG    ca  u 

>ggo-mir-106b (-44.90)   [ggo-miR-106b:12-32]

     c     -UA       G       A A    --  uc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagu  gg  c
||||| |||||   ||||||| ||||||| | ||||  ||   
ggacg ccucg   uucaugg ugucacg c aucg  cc  u
     a     ucg       g       c -    ug  uc 

>ggo-mir-93 (-44.10)   [ggo-miR-93:12-33]

          -cA       -     U    G   ug  au 
cugggggcuc   AAGUGCU GUUCG GCAG UAG  ug  u
||||||||||   ||||||| ||||| |||| |||  ||   
ggcccccgag   uucacga cgagu cguc auc  gc  a
          ccc       u     -    -   ca  cc 

>ggo-mir-25 (-37.80)   [ggo-miR-25:52-73]

    a ug   ag    g     uu g     u   --  ac 
ggcc g  uug  aggc gagac  g gcaau gcu  gg  g
|||| |  |||  |||| |||||  | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg  cc  u
    c gu   AG    G     UU A     -   gu  cg 

>age-mir-106b (-44.90)   [age-miR-106b:12-32]

     c     -UA       G       A A    --  uc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagu  gg  c
||||| |||||   ||||||| ||||||| | ||||  ||   
ggacg ccucg   uucaugg ugucacg c aucg  cc  u
     a     ucg       g       c -    ug  uc 

>age-mir-93 (-44.10)   [age-miR-93:12-33]

          -cA       -     U    G   u  g u 
cugggggcuc   AAGUGCU GUUCG GCAG UAG gu a u
||||||||||   ||||||| ||||| |||| ||| || | a
ggcccccgag   uucacga cgagu cguc auc ca u c
          ccc       u     -    -   -  g c 

>ppa-mir-106b (-44.90)   [ppa-miR-106b:12-32]

     c     -UA       G       A A    --  uc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagu  gg  c
||||| |||||   ||||||| ||||||| | ||||  ||   
ggacg ccucg   uucaugg ugucacg c aucg  cc  u
     a     ucg       g       c -    ug  uc 

>ppa-mir-93 (-44.10)   [ppa-miR-93:12-33]

          -cA       -     U    G   ug  au 
cugggggcuc   AAGUGCU GUUCG GCAG UAG  ug  u
||||||||||   ||||||| ||||| |||| |||  ||   
ggcccccgag   uucacga cgagu cguc auc  gc  a
          ccc       u     -    -   ca  cc 

>ppa-mir-25 (-37.80)   [ppa-miR-25:52-73]

    a ug   ag    g     uu g     u   --  ac 
ggcc g  uug  aggc gagac  g gcaau gcu  gg  g
|||| |  |||  |||| |||||  | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg  cc  u
    c gu   AG    G     UU A     -   gu  cg 

>ppy-mir-106b (-44.90)   [ppy-miR-106b:12-32]

     c     -UA       G       A A    --  uc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagu  gg  c
||||| |||||   ||||||| ||||||| | ||||  ||   
ggacg ccucg   uucaugg ugucacg c aucg  cc  u
     a     ucg       g       c -    ug  uc 

>ppy-mir-93 (-44.10)   [ppy-miR-93:12-33]

          -cA       -     U    G   ug  au 
cugggggcuc   AAGUGCU GUUCG GCAG UAG  ug  u
||||||||||   ||||||| ||||| |||| |||  ||   
ggcccccgag   uucacga cgagu cguc auc  gc  a
          ccc       u     -    -   ca  cc 

>ppy-mir-25 (-37.80)   [ppy-miR-25:52-73]

    a ug   ag    g     uu g     u   --  ac 
ggcc g  uug  aggc gagac  g gcaau gcu  gg  g
|||| |  |||  |||| |||||  | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg  cc  u
    c gu   AG    G     UU A     -   gu  cg 

>ptr-mir-106b (-44.90)   [ptr-miR-106b:12-32]

     c     -UA       G       A A    --  uc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagu  gg  c
||||| |||||   ||||||| ||||||| | ||||  ||   
ggacg ccucg   uucaugg ugucacg c aucg  cc  u
     a     ucg       g       c -    ug  uc 

>ptr-mir-93 (-44.10)   [ptr-miR-93:12-33]

          -cA       -     U    G   ug  au 
cugggggcuc   AAGUGCU GUUCG GCAG UAG  ug  u
||||||||||   ||||||| ||||| |||| |||  ||   
ggcccccgag   uucacga cgagu cguc auc  gc  a
          ccc       u     -    -   ca  cc 

>ptr-mir-25 (-32.90)   [ptr-miR-25:52-72]

   --ca     gaga   g     uu g     u   --  ac 
ggc    guguu    ggc gagac  g gcaau gcu  gg  g
|||    |||||    ||| |||||  | ||||| |||  ||  c
ccg    cgcag    UCG CUCUG  C CGUUA Cgg  cc  u
   cccg     --AG   G     UU A     -   gu  cg 

>mml-mir-106b (-49.50)   [mml-miR-106b:12-32]

           -UA       G       A A    --  uc 
ccugcuggggc   AAGUGCU ACAGUGC G Uagu  gg  c
|||||||||||   ||||||| ||||||| | ||||  ||   
ggacgaccucg   uucaugg ugucacg c aucg  cc  u
           ucg       g       c -    ug  uc 

>mml-mir-93 (-44.80)   [mml-miR-93:12-33]

          -cA       -     U    G   ug  au 
cugggggcuc   AAGUGCU GUUCG GCAG UAG  ug  u
||||||||||   ||||||| ||||| |||| |||  ||   
gacccccgag   uucacga cgagu cguc auc  gc  a
          ccc       u     -    -   ca  ca 

>mml-mir-25 (-37.80)   [mml-miR-25:52-73]

    a ug   ag    g     uu g     u   --  ac 
ggcc g  uug  aggc gagac  g gcaau gcu  gg  g
|||| |  |||  |||| |||||  | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg  cc  u
    c gu   AG    G     UU A     -   gu  cg 

>sla-mir-106b (-44.90)   [sla-miR-106b:12-32]

     c     -UA       G       A A    --  uc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagu  gg  c
||||| |||||   ||||||| ||||||| | ||||  ||   
ggacg ccucg   uucaugg ugucacg c aucg  cc  u
     a     ucg       g       c -    ug  uc 

>sla-mir-93 (-44.80)   [sla-miR-93:12-33]

          -cA       -     U    G   ug  au 
cugggggcuc   AAGUGCU GUUCG GCAG UAG  ug  u
||||||||||   ||||||| ||||| |||| |||  ||   
ggcccccgag   uucacga cgagu cguc auc  ac  a
          ccc       u     -    -   ca  cc 

>lla-mir-106b (-44.00)   [lla-miR-106b:12-32]

     c     -UA       G       A A   ug cc 
ccugc ggggc   AAGUGCU ACAGUGC G Uag  u  u
||||| |||||   ||||||| ||||||| | |||  |  c
ggacg ccucg   uucaugg ugucacg c auc  g  u
     a     ucg       g       c -   gu cc 

>lla-mir-93 (-38.40)   [lla-miR-93:12-33]

cuc       -cA       -     U    G   u  g u 
   ggggcuc   AAGUGCU GUUCG GCAG UAG gu a u
   |||||||   ||||||| ||||| |||| ||| || | a
   ccccgag   uucacga cgagu cguc auc ca u c
ggc       ccc       u     -    -   -  g c 

>lla-mir-25 (-37.80)   [lla-miR-25:52-73]

    a ug   ag    g     uu g     u   --  ac 
ggcc g  uug  aggc gagac  g gcaau gcu  gg  g
|||| |  |||  |||| |||||  | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg  cc  u
    c gu   AG    G     UU A     -   gu  cg 

>mne-mir-106b (-49.50)   [mne-miR-106b:12-32]

           -UA       G       A A    --  uc 
ccugcuggggc   AAGUGCU ACAGUGC G Uagu  gg  c
|||||||||||   ||||||| ||||||| | ||||  ||   
ggacgaccucg   uucaugg ugucacg c aucg  cc  u
           ucg       g       c -    ug  uc 

>mne-mir-93 (-44.80)   [mne-miR-93:12-33]

          -cA       -     U    G   ug  au 
cugggggcuc   AAGUGCU GUUCG GCAG UAG  ug  u
||||||||||   ||||||| ||||| |||| |||  ||   
gacccccgag   uucacga cgagu cguc auc  gc  a
          ccc       u     -    -   ca  ca 

>mne-mir-25 (-37.80)   [mne-miR-25:52-73]

    a ug   ag    g     uu g     u   --  ac 
ggcc g  uug  aggc gagac  g gcaau gcu  gg  g
|||| |  |||  |||| |||||  | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg  cc  u
    c gu   AG    G     UU A     -   gu  cg 

>mml-mir-183 (-41.10)   [mml-miR-183:27-49]

ccgcagaa    ac  -----         g      --AC     GA        --   ac 
        cgug  uc     cuguucugu UAUGGC    UGGUA  AUUCACUG  uga  a
        ||||  ||     ||||||||| ||||||    |||||  ||||||||  |||   
        gcac  ag     gacgagaca auaccg    gccau  uaagugac  gcu  g
-------a    cu  acaga         a      ggaa     --        ug   cu 

>mml-mir-96 (-34.40)   [mml-miR-96:9-30]

ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCuu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg ua aaccguga cgugua  aacgag   cgc  c
aaa  g  u        -      cu      ucu   cu 

>ptr-mir-183 (-41.90)   [ptr-miR-183:27-49]

ccgcaga   u  ---c  -         g      --AC     GA        --   ac 
       gug ga    uc cuguucugu UAUGGC    UGGUA  AUUCACUG  uga  a
       ||| ||    || ||||||||| ||||||    |||||  ||||||||  |||   
       cac cu    ag gacgagaca auaccg    gccau  uaagugac  acu  g
-----ag   -  agac  a         a      ggaa     --        ug   cu 

>ptr-mir-96 (-34.40)   [ptr-miR-96:9-30]

ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCuu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg ua aaccguga cgugua  aacgag   cgc  c
aaa  g  u        -      cu      ucu   cu 

>ggo-mir-183 (-41.90)   [ggo-miR-183:27-49]

ccgcaga   u  ---c  -         g      --AC     GA        --   ac 
       gug ga    uc cuguucugu UAUGGC    UGGUA  AUUCACUG  uga  a
       ||| ||    || ||||||||| ||||||    |||||  ||||||||  |||   
       cac cu    ag gacgagaca auaccg    gccau  uaagugac  acu  g
-----ag   -  agac  a         a      ggaa     --        ug   cu 

>ggo-mir-96 (-34.40)   [ggo-miR-96:9-30]

ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCuu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg ua aaccguga cgugua  aacgag   cgc  c
aaa  g  u        -      cu      ucu   cu 

>sla-mir-183 (-40.20)   [sla-miR-183:27-49]

c  ca  a g  a   c        g      --AC     GA        --   ac 
 cg  ga c ug cuc uguucugu UAUGGC    UGGUA  AUUCACUG  uga  a
 ||  || | || ||| |||||||| ||||||    |||||  ||||||||  |||   
 gc  cu g ac gag acgagaca auaccg    gccau  uaagugac  gcu  g
a  uc  a -  a   -        a      ggaa     --        ug   cu 

>sla-mir-96 (-32.52)   [sla-miR-96:9-30]

ugg  g  U        A      UU      gucuc 
   cc au UUGGCACU GCACAU  UUGCuu     u
   || || |||||||| ||||||  ||||||     c
   gg ua aaccguga cgugua  aacgag     c
aaa  g  u        -      cu      ucucg 

>mne-mir-183 (-41.10)   [mne-miR-183:27-49]

ccgcagaa    ac  -----         g      --AC     GA        --   ac 
        cgug  uc     cuguucugu UAUGGC    UGGUA  AUUCACUG  uga  a
        ||||  ||     ||||||||| ||||||    |||||  ||||||||  |||   
        gcac  ag     gacgagaca auaccg    gccau  uaagugac  gcu  g
-------a    cu  acaga         a      ggaa     --        ug   cu 

>mne-mir-96 (-34.40)   [mne-miR-96:9-30]

ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCuu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg ua aaccguga cgugua  aacgag   cgc  c
aaa  g  u        -      cu      ucu   cu 

>ppa-mir-183 (-41.90)   [ppa-miR-183:27-49]

ccgcaga   u  ---c  -         g      --AC     GA        --   ac 
       gug ga    uc cuguucugu UAUGGC    UGGUA  AUUCACUG  uga  a
       ||| ||    || ||||||||| ||||||    |||||  ||||||||  |||   
       cac cu    ag gacgagaca auaccg    gccau  uaagugac  acu  g
-----ag   -  agac  a         a      ggaa     --        ug   cu 

>ppa-mir-96 (-34.40)   [ppa-miR-96:9-30]

ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCuu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg ua aaccguga cgugua  aacgag   cgc  c
aaa  g  u        -      cu      ucu   cu 

>ggo-mir-106a (-30.10)   [ggo-miR-106a:13-36]

  u   cc      -        A  G     G   C  u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uu u
|| |||  |||||| |||||||| || ||||| ||| || u
gg acc  uacauu uucacgaa gu acguc auc ag g
  u   au      c        c  a     -   u  a 

>ggo-mir-19b-2 (-40.60)   [ggo-miR-19b:62-84]

      cuac                 -  -       uuca       u 
acauug    uuacaauuaguuuugca gg uuugcau    gcguaua a
||||||    ||||||||||||||||| || |||||||    |||||||  
uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
      ----                 A  U       Ucgg       g 

>ggo-mir-92-2 (-30.20)   [ggo-miR-92:48-69]

  a   c     g     uu  u   u     -      
uc ucc ugggu gggau  gu gca uacuu guguu 
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uauau 
  a   U     G     UU  -   U     a      

>age-mir-106a (-30.10)   [age-miR-106a:13-36]

  u   cc      -        A  G     G   C  u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uu u
|| |||  |||||| |||||||| || ||||| ||| || u
gg acc  uacauu uucacgaa gu acguc auc ag g
  u   au      c        c  a     -   u  a 

>age-mir-19b-2 (-36.40)   [age-miR-19b:62-84]

acauugcuac                 -  -      uuu    -     ca 
          uuacaauuaguuuugca gg uuugca   cagc guaua  u
          ||||||||||||||||| || ||||||   |||| |||||   
          aguguuAGUCAAAACGU CC AAACGU   GUcg uauau  g
----uguacu                 A  U      ---    g     au 

>age-mir-92-2 (-30.20)   [age-miR-92:48-69]

  a   c     g     uu  u   u     -      
uc ucc ugggu gggau  gu gca uacuu guguu 
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uauau 
  a   U     G     UU  -   U     a      

>ppa-mir-106a (-30.10)   [ppa-miR-106a:13-36]

  u   cc      -        A  G     G   C  u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uu u
|| |||  |||||| |||||||| || ||||| ||| || u
gg acc  uacauu uucacgaa gu acguc auc ag g
  u   au      c        c  a     -   u  a 

>ppa-mir-19b-2 (-40.60)   [ppa-miR-19b:62-84]

      cuac                 -  -       uuca       u 
acauug    uuacaauuaguuuugca gg uuugcau    gcguaua a
||||||    ||||||||||||||||| || |||||||    |||||||  
uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
      ----                 A  U       Ucgg       g 

>ppa-mir-92-2 (-30.20)   [ppa-miR-92:48-69]

  a   c     g     uu  u   u     -      
uc ucc ugggu gggau  gu gca uacuu guguu 
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uauau 
  a   U     G     UU  -   U     a      

>lca-mir-19b-2 (-38.60)   [lca-miR-19b:56-78]

auacugcuac                 -  -      uuu    g au 
          ucacgauuaguuuugca gg uuugca   cagc u  a
          ||||||||||||||||| || ||||||   |||| |  c
          agugcuAGUCAAAACGU CC AAACGU   GUcg a  a
----uguaau                 A  U      ---    g au 

>lca-mir-92-2 (-33.90)   [lca-miR-92:48-69]

  a    ug   g     uu  u   u     guguu 
uc uccg  ggu gggau  gu gca uacuu     a
|| ||||  ||| |||||  || ||| |||||      
ag aggU  CCG CCCUG  CA CGU AUgaa     u
  a    GU   G     UU  -   U     augua 

>mml-mir-106a (-30.10)   [mml-miR-106a:13-36]

  u   cc      -        A  G     G   C  u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uu u
|| |||  |||||| |||||||| || ||||| ||| || u
gg acc  uacauu uucacgaa gu acguc auc ag g
  u   au      c        c  a     -   u  a 

>mml-mir-19b-2 (-40.60)   [mml-miR-19b:62-84]

      cuac                 -  -       uuca       u 
acauug    uuacaauuaguuuugca gg uuugcau    gcguaua a
||||||    ||||||||||||||||| || |||||||    |||||||  
uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
      ----                 A  U       Ucgg       g 

>ppy-mir-106a (-30.10)   [ppy-miR-106a:13-36]

  u   cc      -        A  G     G   C  u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uu u
|| |||  |||||| |||||||| || ||||| ||| || u
gg acc  uacauu uucacgaa gu acguc auc ag g
  u   au      c        c  a     -   u  a 

>ppy-mir-19b-2 (-40.60)   [ppy-miR-19b:62-84]

      cuac                 -  -       uuca       u 
acauug    uuacaauuaguuuugca gg uuugcau    gcguaua a
||||||    ||||||||||||||||| || |||||||    |||||||  
uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
      ----                 A  U       Ucgg       g 

>ppy-mir-92-2 (-30.20)   [ppy-miR-92:48-69]

  a   c     g     uu  u   u     -      
uc ucc ugggu gggau  gu gca uacuu guguu 
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uauau 
  a   U     G     UU  -   U     a      

>ptr-mir-106a (-30.10)   [ptr-miR-106a:13-36]

  u   cc      -        A  G     G   C  u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uu u
|| |||  |||||| |||||||| || ||||| ||| || u
gg acc  uacauu uucacgaa gu acguc auc ag g
  u   au      c        c  a     -   u  a 

>ptr-mir-19b-2 (-41.00)   [ptr-miR-19b:63-85]

g      cuac                 -  -       uuca       u 
 acauug    uuacaauuaguuuugca gg uuugcau    gcguaua a
 ||||||    ||||||||||||||||| || |||||||    |||||||  
 uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
-      ----                 A  U       Ucgg       g 

>ptr-mir-92-2 (-28.60)   [ptr-miR-92:47-68]

----    cccu    g     uu  u   u     g  u 
    ucau    gggu gggau  gu gca uacuu ug u
    ||||    |||| |||||  || ||| ||||| || c
    agUG    UCCG CCCUG  CA CGU AUgaa ac c
agag    ----    G     UU  -   U     a  a 

>sla-mir-106a (-30.10)   [sla-miR-106a:13-36]

  u   cc      -        A  G     G   C  u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uu u
|| |||  |||||| |||||||| || ||||| ||| || u
gg acc  uacauu uucacgaa gu acguc auc ag g
  u   au      c        c  a     -   u  a 

>sla-mir-19b-2 (-38.40)   [sla-miR-19b:62-84]

      cuac                 -  -      uuu    -     ca 
acauug    uuacaguuaguuuugca gg uuugca   cagc guaua  u
||||||    ||||||||||||||||| || ||||||   |||| |||||   
uguaau    aguguuAGUCAAAACGU CC AAACGU   GUcg uauau  g
      ----                 A  U      ---    g     au 

>sla-mir-92-2 (-30.20)   [sla-miR-92:48-69]

  a   c     g     uu  u   u     -      
uc ucc ugggu gggau  gu gca uacuu guguu 
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uauau 
  a   U     G     UU  -   U     a      

>lla-mir-19b-2 (-36.40)   [lla-miR-19b:62-84]

acauugcuac                 -  -      uuu    -     ca 
          uuacaauuaguuuugca gg uuugca   cagc guaua  u
          ||||||||||||||||| || ||||||   |||| |||||   
          aguguuAGUCAAAACGU CC AAACGU   GUcg uauau  g
----uguacu                 A  U      ---    g     au 

>lla-mir-92-2 (-30.20)   [lla-miR-92:48-69]

  a   c     g     uu  u   u     -      
uc ucc ugggu gggau  gu gca uacuu guguu 
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uauau 
  a   U     G     UU  -   U     a      

>mne-mir-106a (-30.10)   [mne-miR-106a:13-36]

  u   cc      -        A  G     G   C  u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uu u
|| |||  |||||| |||||||| || ||||| ||| || u
gg acc  uacauu uucacgaa gu acguc auc ag g
  u   au      c        c  a     -   u  a 

>mne-mir-19b-2 (-40.60)   [mne-miR-19b:62-84]

      cuac                 -  -       uuca       u 
acauug    uuacaauuaguuuugca gg uuugcau    gcguaua a
||||||    ||||||||||||||||| || |||||||    |||||||  
uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
      ----                 A  U       Ucgg       g 

>mne-mir-92 (-30.20)   [mne-miR-92:48-69]

  a   c     g     uu  u   u     -      
uc ucc ugggu gggau  gu gca uacuu guguu 
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uauau 
  a   U     G     UU  -   U     a      

>hsa-mir-488 (-32.60)   [hsa-miR-488*:14-34] [hsa-miR-488:52-72]

    a      cu  C   U      A  C        guu 
gaga ucaucu  CC AGA AAUGGC CU UCAAacaa   u
|||| ||||||  || ||| |||||| || ||||||||   c
cucu aguaga  GG UCU UUAUCG GA AGUUuguu   c
    c      CU  U   -      -  A        aaa 

>hsa-mir-489 (-38.40)   [hsa-miR-489:52-73]

       c     g             c c    ua     a 
guggcag uuggu gucguauguguga g cauu  cuuga c
||||||| ||||| ||||||||||||| | ||||  |||||  
caucguc aauCG CGGCAUAUACACU C GUGa  ggauu c
       a     A             A A    --     u 

>hsa-mir-490 (-54.40)   [hsa-miR-490-5p:39-58] [hsa-miR-490-3p:76-97]

u     -cc      g    -   aguucauu        C      --         G   caa   u 
 ggagg   uugcug uuug gaa        guucgaca CAUGGA  UCUCCAGGU GGU   guu a
 |||||   |||||| |||| |||        |||||||| ||||||  ||||||||| |||   |||  
 ccuuc   ggcgac gaac cuu        cgaguuGU GUACCU  GGAGGUCCA Cca   uag g
a     aca      -    a   ------gu        C      CA         A   -cg   a 

>hsa-mir-491 (-49.40)   [hsa-miR-491-5p:16-37] [hsa-miR-491-3p:50-71]

 ug       ug     U      CC   C          a 
u  acuuagc  gguAG GGGGAA  CUU CAUGAGGagu g
|  |||||||  ||||| ||||||  ||| |||||||||| a
g  ugggucg  cCAUC UCCCUU  GAA GUAUUCcuca a
 gu       gu     U      -A   C          c 

>hsa-mir-511-1 (-33.00)   [hsa-miR-511:16-36]

    a   ac    cG           CU   G   g    ua 
caau gac  ccau  UGUCUUUUGCU  GCA UCA uaaa  u
|||| |||  ||||  |||||||||||  ||| ||| ||||   
guua cug  ggua  acagaaaacga  ugu agu guuu  u
    c   gu    ag           ug   a   -    uu 

>hsa-mir-511-2 (-33.00)   [hsa-miR-511:16-36]

    a   ac    cG           CU   G   g    ua 
caau gac  ccau  UGUCUUUUGCU  GCA UCA uaaa  u
|||| |||  ||||  |||||||||||  ||| ||| ||||   
guua cug  ggua  acagaaaacga  ugu agu guuu  u
    c   gu    ag           ug   a   -    uu 

>hsa-mir-146b (-37.10)   [hsa-miR-146b-5p:9-30] [hsa-miR-146b-3p:45-66]

  u      G        AU        CU  ga  u 
cc ggcacU AGAACUGA  UCCAUAGG  gu  gc c
|| |||||| ||||||||  ||||||||  ||  ||  
gg ccguGG UCUUGACU  AGGUGUCC  Ua  cg u
  c      -        -C        CG  -a  a 

>hsa-mir-202 (-58.80)   [hsa-miR-202*:28-49] [hsa-miR-202:64-83]

   cuca   cc     -       u           -A           G   au 
cgc    gag  gcccg ccguucc uuUUCCUAUGC  UAUACUUCUUU agg  c
|||    |||  ||||| ||||||| |||||||||||  ||||||||||| |||   
gcg    cuc  ugggc ggcgggg aaAAGGGUACG  AUAUGGAGAaa ucc  u
   accc   -c     u       c           GG           -   gg 

>hsa-mir-492 (-41.52)   [hsa-miR-492:30-52]

caa  a      cuacuacag  c   c AG  C           GAU        ccacc 
   cu cagcca         ga cau g  GA CUGCGGGACAA   UCUUggug     a
   || ||||||         || ||| |  || |||||||||||   ||||||||     u
   ga gucggu         cu gua c  cu gacguccuguu   aggaccgc     u
gua  c      ------caa  c   a aa  a           ---        aagag 

>hsa-mir-493 (-47.70)   [hsa-miR-493*:16-37] [hsa-miR-493:57-78]

     cuc        U                    cauuc  u 
cuggc   cagggcuU GUACAUGGUAGGCUUUCAUU     gu u
|||||   |||||||| ||||||||||||||||||||     ||  
gaccg   gucccGGA CGUGUGUCAUCUGGAAGUgg     ca g
     --u        C                    -cuua  c 

>hsa-mir-432 (-42.10)   [hsa-miR-432:14-36] [hsa-miR-432*:62-82]

u  -  c       U U     UA       G     a   u -  uu 
 ga cu cuccagg C UGGAG  GGUCAUU GGUGG ucc c ua  u
 || || ||||||| | |||||  ||||||| ||||| ||| | ||   
 cu ga gagguUC G ACCUC  UCGGUAG UCacc ggg g au  c
a  a  u       U U     -C       G     -   u c  uc 

>hsa-mir-494 (-34.10)   [hsa-miR-494:48-69]

      c            gu      -   c   -  uuu 
gauacu gaaggagagguu  ccgugu ugu uuc uc   a
|||||| ||||||||||||  |||||| ||| ||| ||   u
cuauga uuuuuuCUCCAA  GGCACA ACA AAG ag   u
      -            AG      U   -   U  uau 

>hsa-mir-495 (-35.60)   [hsa-miR-495:50-71]

u      u          u  -       au     - uuu 
 gguacc gaaaagaagu gc ccauguu  uuucg c   a
 |||||| |||||||||| || |||||||  ||||| |   u
 cuaugg uuuUUCUUCA CG GGUACAA  AAAgc g   a
a      c          -  U       AC     a ugu 

>hsa-mir-496 (-43.10)   [hsa-miR-496:56-77]

      -----uca     u    u        u     gu         uua 
cccaag        gguac cgaa ggagguug ccaug  guguucauu   u
||||||        ||||| |||| |||||||| |||||  |||||||||    
ggguuc        ucaug gcuu cCUCUAAC GGUAC  UAUGAGUag   u
      uucuuaac     -    u        C     AU         uau 

>hsa-mir-193b (-43.10)   [hsa-miR-193b*:14-35] [hsa-miR-193b:51-72]

   gu       u    GU         G  A  Ag uua 
gug  cucagaa CGGG  UUUGAGGGC AG UG  u   u
|||  ||||||| ||||  ||||||||| || ||  |   g
uac  ggguuuU GCCC  AAACUCCCG UC Ac  a   u
   ug       C    UG         G  A  cu uuu 

>hsa-mir-497 (-55.50)   [hsa-miR-497:24-44] [hsa-miR-497*:64-85]

  a cc    -   g         - -----    G    C         U  --   ac 
cc c  cggu ccu cucccgccc C     AGCA CACA UGUGGUUUG ac  ggc  u
|| |  |||| ||| ||||||||| |     |||| |||| ||||||||| ||  |||   
gg g  gcca gga ggggguggg g     UUGU GUGU ACACCAAAC ug  ccg  g
  a cc    c   -         a cgAGA    G    C         c  ca   gu 

>hsa-mir-181d (-69.10)   [hsa-miR-181d:36-58]

      --      -     ----aca   ga       aucA         G UG          guga  a u 
gucccc  uccccu aggcc       gcc  ggucaca    ACAUUCAUU U  UCGGUGGGUu    gg c g
||||||  |||||| |||||       |||  |||||||    ||||||||| |  ||||||||||    || |  
cagggg  agggga uucgg       cgg  ucggugu    uguaaguag g  ggccacccag    cc g a
      ua      a     cacagac   -g       -cac         g --          ---a  - g 

>hsa-mir-512-1 (-46.30)   [hsa-miR-512-5p:14-36] [hsa-miR-512-3p:51-72]

u       ug   CA      CU   G       ----    g 
 cucaguc  ugg  CUCAGC  UGA GGCACUU    UCug u
 |||||||  |||  ||||||  ||| |||||||    ||||  
 gagucag  acC  GAGUCG  ACU UCGUGAA    agac g
g       ua   UG      AU   G       agua    c 

>hsa-mir-512-2 (-49.40)   [hsa-miR-512-5p:20-42] [hsa-miR-512-3p:57-78]

   a   --       ug   CA      CU   G       ----    g 
ggu cuu  cucaguc  ugg  CUCAGC  UGA GGCACUU    UCug u
||| |||  |||||||  |||  ||||||  ||| |||||||    ||||  
cca gag  gagucag  acC  GAGUCG  ACU UCGUGAA    agac g
   c   cg       ua   UG      AU   G       agua    c 

>hsa-mir-498 (-57.50)   [hsa-miR-498:34-56]

aaccc        -aag  aag            -        - A     C       uaua 
     uccuuggg    ug   cucaggcuguga UUUCAAGC C GGGGG GUUUUUC    a
     ||||||||    ||   |||||||||||| |||||||| | ||||| |||||||    c
     aggaaucu    ac   gaguuugacacu gaaguucg g ccucc cgaaaag    u
-uuga        gcua  -ga            c        a a     a       uagg 

>hsa-mir-520e (-49.00)   [hsa-miR-520e:54-74]

    cu  u             u       g     guug   g 
ucuc  gc gugacccucaaga ggaagca uuucu    ucu a
||||  || ||||||||||||| ||||||| |||||    |||  
agag  ug cauuGGGAGUUUU CCUUCGU AAAga    agg a
    uu  u             U       G     ---a   a 

>hsa-mir-515-1 (-40.80)   [hsa-miR-515-5p:14-37] [hsa-miR-515-3p:51-72]

     u     c  U           A    UU      gu 
ucuca gcagu aU CUCCAAAAGAA GCAC  UCUGuu  c
||||| ||||| || ||||||||||| ||||  ||||||  u
agagu uguca UG GAGGUUUUCUU CGUG  AGacga  g
     u     U  C           C    --      aa 

>hsa-mir-519e (-36.30)   [hsa-miR-519e*:14-35] [hsa-miR-519e:52-73]

     u     c  U   C      GA      UC     ga 
ucuca gcagu aU CUC AAAAGG  GCACUU  uguuu  a
||||| ||||| || ||| ||||||  ||||||  |||||   
agagu uguca UG GAG UUUUCC  CGUGAA  acaaa  a
     u     U  U   A      UC      --     ag 

>hsa-mir-520f (-52.60)   [hsa-miR-520f:55-76]

        u                        u  gugg  a 
ucucaggc gugacccucuaaagggaagcgcuu cu    uc g
|||||||| |||||||||||||||||||||||| ||    || a
aggguuug caUUGGGAGAUUUUCCUUCGUGAA ga    ag a
        c                        c  --aa  a 

>hsa-mir-515-2 (-40.80)   [hsa-miR-515-5p:14-37] [hsa-miR-515-3p:51-72]

     u     c  U           A    UU      gu 
ucuca gcagu aU CUCCAAAAGAA GCAC  UCUGuu  c
||||| ||||| || ||||||||||| ||||  ||||||  u
agagu uguca UG GAGGUUUUCUU CGUG  AGacga  g
     u     U  C           C    --      aa 

>hsa-mir-519c (-45.20)   [hsa-miR-519c-5p:16-37] [hsa-miR-519c-3p:54-75]

      c      c            A         Guug  u 
ucucag cuguga cCUCUAGAGGGA GCGCUUUCU    uc g
|||||| |||||| |||||||||||| |||||||||    || a
agaguu gacauU GGAGAUUUUUCU CGUGAAAga    ag a
      u      A            A         --aa  a 

>hsa-mir-520a (-48.50)   [hsa-miR-520a-5p:15-35] [hsa-miR-520a-3p:53-74]

         u   cC                    g  g    
cucaggcug gac  UCCAGAGGGAAGUACUUUCU uu ucu 
||||||||| |||  |||||||||||||||||||| || || g
gaguuuggc uUG  AGGUUUCCCUUCGUGAAAga aa aga 
         u   UC                    a  g    

>hsa-mir-526b (-46.40)   [hsa-miR-526b:14-36] [hsa-miR-526b*:51-72]

      u    c     U                G  g c 
ucaggc guga cCUCU GAGGGAAGCACUUUCU Uu u u
|||||| |||| ||||| |||||||||||||||| || | g
agucug cauu GGAGA UUUCCUUCGUGAAAGa aa a a
      u    C     U                g  g a 

>hsa-mir-519b (-38.30)   [hsa-miR-519b-5p:13-34] [hsa-miR-519b-3p:51-72]

  u  u    c            A         Guug  u 
ca gc guga cCUCUAGAGGGA GCGCUUUCU    uc g
|| || |||| |||||||||||| |||||||||    || a
gu ug cauU GGAGAUUUUCCU CGUGAAAga    ag a
  u  u    U            A         --aa  a 

>hsa-mir-525 (-40.40)   [hsa-miR-525-5p:15-35] [hsa-miR-525-3p:52-73]

             u   C       U  A      c  aug 
cucaagcugugac CUC AGAGGGA GC CUUUCU uu   u
||||||||||||| ||| ||||||| || |||||| ||   g
ggguuuggcauuG GAG UUUCCCU CG GGAAGa aa   a
             C   A       U  C      a  aaa 

>hsa-mir-523 (-49.60)   [hsa-miR-523*:16-37] [hsa-miR-523:53-75]

     ugcu           G          U    Guug  u 
ucuca    gugaccCUCUA AGGGAAGCGC UUCU    uc g
|||||    ||||||||||| |||||||||| ||||    || a
agagu    cauUGGGAGAU UCCCUUCGCG AAGa    ag a
     uucc           A          C    --aa  a 

>hsa-mir-518f (-42.30)   [hsa-miR-518f*:16-37] [hsa-miR-518f:53-73]

     ugcu    c               A     ---    gu 
ucuca    guga cCUCUAGAGGGAAGC CUUUC   UCuu  c
|||||    |||| ||||||||||||||| |||||   ||||   
agagu    cauu GGAGAUUUCUCUUCG GAAAG   agaa  u
     uucu    a               C     aaa    aa 

>hsa-mir-520b (-36.20)   [hsa-miR-520b:41-61]

       c               guug  u 
cccucua agggaagcgcuuucu    uc g
||||||| |||||||||||||||    || a
GGGAGAU UUCCUUCGUGAAAga    ag a
       U               --aa  a 

>hsa-mir-518b (-39.70)   [hsa-miR-518b:51-72]

   u      gc    c      a       uc    g  u 
uca gcugug  ccuc agaggg agcgcuu  uguu uc g
||| ||||||  |||| |||||| |||||||  |||| || a
agu uggcau  GGAG UUUCCC UCGCGAA  ACaa ag a
   u      uU    A      C       --    a  a 

>hsa-mir-526a-1 (-43.60)   [hsa-miR-526a:15-36]

      cu    c               A      G  g  u 
cucagg  guga cCUCUAGAGGGAAGC CUUUCU uu cu g
||||||  |||| ||||||||||||||| |||||| || ||  
gaguuu  cauu ggagauuuuccuucg gaaaga aa ga a
      cu    a               c      g  -  a 

>hsa-mir-520c (-51.30)   [hsa-miR-520c-5p:16-37] [hsa-miR-520c-3p:54-75]

        u  cg                       Guug  u 
ucucaggc gu  ucCUCUAGAGGGAAGCACUUUCU    uc g
|||||||| ||  |||||||||||||||||||||||    || a
agaguuug ca  GGGAGAUUUUCCUUCGUGAAAga    ag a
        c  uU                       --aa  a 

>hsa-mir-518c (-46.40)   [hsa-miR-518c*:24-46] [hsa-miR-518c:62-84]

gcgagaaga     u        U              A   UC    g  u 
         ucuca gcugugac CUCUGGAGGGAAGC CUU  UGuu uc g
         ||||| |||||||| |||||||||||||| |||  |||| || a
         agagu uggcauUG GAGAUUUCUCUUCG GAA  ACaa ag a
----cgaaa     u        U              C   --    a  a 

>hsa-mir-524 (-46.60)   [hsa-miR-524-5p:16-37] [hsa-miR-524-3p:53-73]

     u        c  A           A      Cuug     
ucuca gcugugac CU CAAAGGGAAGC CUUUCU    ucca 
||||| |||||||| || ||||||||||| ||||||    ||| a
agagu uggcauug GA GUUUCCCUUCG GGAAGa    agga 
     u        U  G           C      --aa     

>hsa-mir-517a (-42.80)   [hsa-miR-517*:15-36] [hsa-miR-517a:54-75]

              C       U   A    U    g  g a 
ucucaggcagugac CUCUAGA GGA GCAC GUCU uu u u
|||||||||||||| ||||||| ||| |||| |||| || | a
agaguuugucauUG GAGAUUU CCU CGUG UAga aa a a
              U       C   A    C    a  g a 

>hsa-mir-519d (-41.50)   [hsa-miR-519d:54-75]

     u  u     c   c       a      uc      uuu 
uccca gc gugac cuc aaaggga gcgcuu  uguuug   u
||||| || ||||| ||| ||||||| ||||||  ||||||    
agggu ug cauuG GAG UUUCCCU CGUGAA  ACaaau   c
     u  c     U   A       C      --      ucu 

>hsa-mir-521-2 (-34.70)   [hsa-miR-521:54-75]

     g  u     u   c         ---aa    c    gu 
ucucg gc gugac cuc aaagggaag     uuuu ucuu  c
||||| || ||||| ||| |||||||||     |||| ||||   
agagu ug cauUG GAG UUUCCCUUC     Agaa agaa  u
     g  c     U   A         ACGCA    a    aa 

>hsa-mir-520d (-44.50)   [hsa-miR-520d-5p:16-35] [hsa-miR-520d-3p:54-75]

             g  UA           C      guug  u 
ucucaagcuguga uC  CAAAGGGAAGC CUUUCu    uc a
||||||||||||| ||  ||||||||||| ||||||    || a
agaguuuggcauU GG  GUUUCUCUUCG GAAAga    ag a
             G  UG           U      --aa  a 

>hsa-mir-517b (-26.62)   [hsa-miR-517*:6-27] [hsa-miR-517b:44-65]

     C       U   A    U    guugu 
gugac CUCUAGA GGA GCAC GUCU     c
||||| ||||||| ||| |||| ||||     u
caUUG GAGAUUU CCU CGUG Uaga     a
     U       C   A    C    aaaga 

>hsa-mir-520g (-41.62)   [hsa-miR-520g:55-78]

     u  u     c         -        uc     guugu 
uccca gc gugac cucuagagg aagcacuu  uguuu     c
||||| || ||||| ||||||||| ||||||||  |||||     u
agggu ug cauUG GAGAUUUCC UUCGUGAA  ACAaa     g
     u  c     U         C        --     aaaga 

>hsa-mir-516b-2 (-37.30)   [hsa-miR-516b:16-37] [hsa-miR-516b*:56-73]

     -u  u      A        UAA          g guuu 
ucuca  ga gugacc UCUGGAGG   GAAGCACUUU u    u
|||||  || |||||| ||||||||   |||||||||| |     
agagu  cu cauUGG AGACUUUC   CUUCGUgaaa a    g
     uu  -      G        ---          g aagu 

>hsa-mir-526a-2 (-31.20)   [hsa-miR-526a:7-28]

          AG     A   CU    -G  g 
gugaccCUCU  AGGGA GCA  UUCU  uu a
||||||||||  ||||| |||  ||||  ||  
cauugggaga  uuccu cgu  aaga  ag a
          cu     a   ac    aa  a 

>hsa-mir-518e (-45.76)   [hsa-miR-518e*:16-37] [hsa-miR-518e:54-74]

      -  ug    c    AG               Guuggc 
ucucag gc  ugac CUCU  AGGGAAGCGCUUUCU      u
|||||| ||  |||| ||||  |||||||||||||||      a
agaguu cg  auuG GAGA  UCCCUUCGCGAAAga      a
      u  ca    U    CU               aaagaa 

>hsa-mir-518a-1 (-47.60)   [hsa-miR-518a-5p:14-33] [hsa-miR-518a-3p:51-72]

             -  -            C      g  g c 
ucucaagcuguga CU GCAAAGGGAAGC CUUUCu uu u u
||||||||||||| || |||||||||||| |||||| || | g
agaguuuggcauu GG CGUUUCCCUUCG GAAAGa aa a a
             A  U            C      g  g a 

>hsa-mir-518d (-41.20)   [hsa-miR-518d-5p:16-37] [hsa-miR-518d-3p:53-73]

  c  u        c              A    CU   g  u 
uc ca gcugugac CUCUAGAGGGAAGC CUUU  Guu uc g
|| || |||||||| |||||||||||||| ||||  ||| || a
ag gu uggcauug GAGGUUUCCCUUCG GAAA  caa ag a
  a  u        C              C    -C   -  a 

>hsa-mir-516b-1 (-44.90)   [hsa-miR-516b:16-37] [hsa-miR-516b*:61-78]

       cu      A        UAA            g    g 
ucucagg  gugacc UCUGGAGG   GAAGCACUUUcu uuuu u
|||||||  |||||| ||||||||   |||||||||||| |||| g
agaguuu  cauUGG AGACUUUC   CUUCGUgaaaga aaga a
       cu      G        ---            a    a 

>hsa-mir-518a-2 (-48.40)   [hsa-miR-518a-5p:16-35] [hsa-miR-518a-3p:53-74]

             g   -            C      g  g c 
ucucaagcugugg uCU GCAAAGGGAAGC CUUUCu uu u u
||||||||||||| ||| |||||||||||| |||||| || | a
agaguuuggcauu AGG CGUUUCCCUUCG GAAAGa aa a a
             -   U            C      g  g a 

>hsa-mir-517c (-44.02)   [hsa-miR-517*:20-41] [hsa-miR-517c:57-78]

gaaga              C       U   A    U    guugu 
     ucucaggcagugac CUCUAGA GGA GCAC GUCU     c
     |||||||||||||| ||||||| ||| |||| ||||     u
     agaguuugucauUG GAGAUUU CCU CGUG UAga     a
cuaaa              U       U   A    C    aaaga 

>hsa-mir-520h (-36.72)   [hsa-miR-520h:55-76]

     u  u     cc        -        uc     guugu 
uccca gc gugac  ucuagagg aagcacuu  uguuu     c
||||| || |||||  |||||||| ||||||||  |||||     u
agggu ug cauUG  AGAUUUCC UUCGUGAA  ACAaa     g
     u  u     --        C        --     aaaga 

>hsa-mir-521-1 (-35.90)   [hsa-miR-521:54-75]

     g  u     c   c         aa u    guug  u 
ucuca gc gugac cuc aaagggaag  c uucu    uc a
||||| || ||||| ||| |||||||||  | ||||    || a
agagu ug cauUG GAG UUUCCCUUC  G AAga    ag a
     g  c     U   A         AC C    --aa  a 

>hsa-mir-522 (-36.10)   [hsa-miR-522*:16-37] [hsa-miR-522:54-75]

      -  u   u c            G  C     Guug  u 
ucucag gc gug c CUCUAGAGGGAA CG UUUCU    uc g
|||||| || ||| | |||||||||||| || |||||    || a
agaguu cg cau G GAGAUUUCCCUU GU AAAga    ag a
      u  -   U U            G  A     --aa  a 

>hsa-mir-519a-1 (-49.90)   [hsa-miR-519a*:15-36] [hsa-miR-519a:53-74]

       u                 A         Guug  u 
cucaggc gugacaCUCUAGAGGGA GCGCUUUCU    uc g
||||||| ||||||||||||||||| |||||||||    || a
gaguuug cauUGUGAGAUUUUCCU CGUGAAAgg    ag a
       u                 A         --aa  a 

>hsa-mir-527 (-42.10)   [hsa-miR-527:14-33]

             --CUG           C      guug  u 
ucucaagcuguga     CAAAGGGAAGC CUUUCu    uc a
|||||||||||||     ||||||||||| ||||||    || a
agaguuuggcauu     guuucccuucg gaaaga    ag a
             aagug           u      --aa  a 

>hsa-mir-516a-1 (-49.70)   [hsa-miR-516a-5p:16-38] [hsa-miR-516a-3p:61-78]

                   C    AAA            guug  u 
ucucaggcugugaccUUCU GAGG   GAAGCACUUUCu    uc g
||||||||||||||||||| ||||   ||||||||||||    || a
agaguuuggcauUGGGAGA UUUC   CUUCGUgaaaga    ag a
                   C    ---            --aa  a 

>hsa-mir-516a-2 (-45.60)   [hsa-miR-516a-5p:16-38] [hsa-miR-516a-3p:61-78]

     gg            C    AAA            guug  u 
ucuca  uugugaccUUCU GAGG   GAAGCACUUUCu    uc g
|||||  |||||||||||| ||||   ||||||||||||    || a
agagu  ggcauUGGGAGA UUUC   CUUCGUgaaaga    ag a
     uu            C    ---            --aa  a 

>hsa-mir-519a-2 (-38.80)   [hsa-miR-519a:54-75]

        u   u c     c     a         guug  u 
ucucaggc gug c cucua aggga gcgcuuucu    uc g
|||||||| ||| | ||||| ||||| |||||||||    || a
agaguuug cau G GAGAU UUCCU CGUGAAAgg    ag a
        u   U U     U     A         --aa  a 

>hsa-mir-499 (-62.32)   [hsa-miR-499-5p:33-53] [hsa-miR-499-3p:70-91]

         ccugu  cuu   -    c   u  UA        A          acucc 
gcccugucc     gc   ggg cggg ggc gU  AGACUUGC GUGAUGUUUa     u
|||||||||     ||   ||| |||| ||| ||  |||||||| ||||||||||     c
ugggacggg     cg   ccc gccc ucg CG  UCUGAACG CACUACAAgu     u
         uccgu  cau   u    u   U  UG        A          gcacc 

>hsa-mir-500 (-38.70)   [hsa-miR-500:13-35] [hsa-miR-500*:52-73]

    c c     -U         UAC UG    AGAg   ugu 
gcuc c cucuc  AAUCCUUGC   C  GGUG    ugc   c
|||| | |||||  |||||||||   |  ||||    |||   u
cgag g gagaG  UUAGGAACG   G  CCAC    acg   g
    a c     UC         --- GU    -GUA   uaa 

>hsa-mir-501 (-43.10)   [hsa-miR-501-5p:14-35] [hsa-miR-501-3p:51-72]

    u       -u       U U   U     AGAg   uuu 
gcuc uccucuc  AAUCCUU G CCC GGGUG    ugc   c
|||| |||||||  ||||||| | ||| |||||    |||   u
cgag gggagag  UUAGGAA C GGG CCCAC    Acg   g
    u       UC       - -   -     -GUA   uaa 

>hsa-mir-502 (-59.00)   [hsa-miR-502-5p:16-36] [hsa-miR-502-3p:52-73]

u             -         UAU UG     UAg   ugg 
 gcucccccucucu aAUCCUUGC   C  GGUGC   ugc   c
 ||||||||||||| |||||||||   |  |||||   |||   u
 cgagggggagagA UUAGGAACG   G  CCACG   Acg   c
u             C         --- GU     -UA   uaa 

>hsa-mir-450a-2 (-35.40)   [hsa-miR-450a:23-44]

-ccaaagaaa     u       UUU     U               aa 
          gaugc aaacuau   UGCGA GUGUUCCUAAUAUgu  u
          ||||| |||||||   ||||| |||||||||||||||  a
          cuaug uuugaua   acguu uacagggguuaugua  u
gguauaauaa     u       cuu     u               aa 

>hsa-mir-503 (-42.10)   [hsa-miR-503:6-28]

      A              U  G  Gu     a 
ugcccU GCAGCGGGAACAGU CU CA  gagcg u
|||||| |||||||||||||| || ||  ||||| c
auggga cgucgccuuuguua gg gu  cucgu g
      c              u  g  --     g 

>hsa-mir-504 (-52.30)   [hsa-miR-504:13-34]

   -g    -            G          -A  u   u 
gcu  cugu ugggAGACCCUG UCUGCACUCU  UC gua u
|||  |||| |||||||||||| ||||||||||  || |||  
cgg  gaca acccuuugggac ggacgugagg  ag cau c
   ga    u            g          ga  u   u 

>hsa-mir-505 (-44.90)   [hsa-miR-505*:15-36] [hsa-miR-505:51-72]

     ac    u           G    A        ucug 
gaugc  ccag ggGGGAGCCAG AAGU UUGAUGUu    c
|||||  |||| ||||||||||| |||| ||||||||    c
cuacg  gguc cUCCUUUGGUC UUCA AACUGCga    a
     -a    u           G    C        uuug 

>hsa-mir-513a-1 (-62.90)   [hsa-miR-513a-5p:37-54] [hsa-miR-513a-3p:72-94]

            uca  cauu  -  -     g        A   GG     UC        gaa 
gggaugccacau   gc    ca gc guaca ugccuUUC CAG  AGGUG  AUuuaugu   c
||||||||||||   ||    || || ||||| |||||||| |||  |||||  ||||||||    
cccuguggugua   cg    gu cg caugu augGGAAG GUC  UCCAC  UAAAUaua   u
            -ua  ucac  a  a     a        A   UU     UU        aaa 

>hsa-mir-513a-2 (-58.60)   [hsa-miR-513a-5p:36-53] [hsa-miR-513a-3p:71-93]

           --u   -c   u ag      g        A   GG     UC        gaa 
ggaugccacau   cag  cau c  ugugca ugccuUUC CAG  AGGUG  AUuuaugu   c
|||||||||||   |||  ||| |  |||||| |||||||| |||  |||||  ||||||||    
ccuguggugua   guc  gua g  acaugu augGGAAG GUC  UCCAC  UAAAUaua   u
           uac   ac   c --      a        A   UU     UU        aaa 

>hsa-mir-506 (-44.76)   [hsa-miR-506:71-91]

        ---caucag    acua  ug  g   c          a     ua    a     u 
gccaccac         ccau    ug  ua ugc uuauucagga ggugu  cuua uagau a
||||||||         ||||    ||  || ||| |||||||||| |||||  |||| |||||  
cgguggug         ggua    ac  gu aug GAUGAGUCUU CCACG  GAAU guuua a
        uuuacaaca    --ca  gu  a   A          C     --    -     u 

>hsa-mir-507 (-37.90)   [hsa-miR-507:56-76]

   -    -     g  c            a    cau      guc 
gug cugu gugua ug uucacuucaaga gugc   gcaugu   u
||| |||| ||||| || |||||||||||| ||||   ||||||    
cau gaca cacgu au AAGUGAGGUUUU CACG   Uguaua   a
   a    a     a  a            C    UUU      aag 

>hsa-mir-508 (-49.80)   [hsa-miR-508-5p:26-48] [hsa-miR-508-3p:61-83]

     --uuca  ------   -     g   c              GU  C      aaa 
ccacc      gc      uga gugua ugc cUACUCCAGAGGGC  CA UCAUGu   c
|||||      ||      ||| ||||| ||| ||||||||||||||  || ||||||    
ggugg      cg      acu cacau aug GAUGAGGUUUUCCG  GU AGUaca   u
     uuuaua  caaugc   a     a   A              AU  U      aaa 

>hsa-mir-509-1 (-40.90)   [hsa-miR-509-5p:20-40] [hsa-miR-509-3p:55-76]

    c   -   ug    c   - UG     A   G       --g  u 
caug ugu gug  guac cUA C  CAGAC GUG CAAUCAu   ua a
|||| ||| |||  |||| ||| |  ||||| ||| |||||||   ||  
guac aca uac  caug GAU G  GUCUG CAU GUUAGUa   au a
    -   g   gu    a   G GU     -   G       aaa  u 

>hsa-mir-510 (-29.60)   [hsa-miR-510:10-31]

   g  uc      -A    A  GG         g a 
gug ug  cUACUC  GGAG GU  CAAUCACau u a
||| ||  ||||||  |||| ||  ||||||||| |  
cac au  ggugag  ucuc ca  guuagugug a u
   a  ga      aa    -  aa         g u 

>hsa-mir-514-1 (-33.30)   [hsa-miR-514:59-79]

aac    u   -    g   c      -    g    a      u  aua 
   augu guc ugug uac cuacuc ugga agug caauca gu   a
   |||| ||| |||| ||| |||||| |||| |||| |||||| ||    
   ugca cag acgc aug GAUGAG GUCU UCAC GUUAgu ua   u
gca    -   u    a   A      U    -    A      u  aau 

>hsa-mir-514-2 (-31.80)   [hsa-miR-514:54-74]

gu    -    g   c      -    g    a      u  aua 
  uguc ugug uac cuacuc ugga agug caauca gu   a
  |||| |||| ||| |||||| |||| |||| |||||| ||    
  acag acgc aug GAUGAG GUCU UCAC GUUAgu ua   c
-c    u    a   A      U    -    A      u  aau 

>hsa-mir-514-3 (-31.80)   [hsa-miR-514:54-74]

gu    -    g   c      -    g    a      u  aua 
  uguc ugug uac cuacuc ugga agug caauca gu   a
  |||| |||| ||| |||||| |||| |||| |||||| ||    
  acag acgc aug GAUGAG GUCU UCAC GUUAgu ua   c
-c    u    a   A      U    -    A      u  aau 

>osa-MIR528 (-46.20)   [osa-miR528:3-23]

             U   G     ca     uu   -uu     c 
agUGGAAGGGGCA GCA AGGAG  ggaga  cag   ugaag u
||||||||||||| ||| |||||  |||||  |||   ||||| g
uuaccuucuccgu cgu uccuc  ucucu  guu   acuuc g
             u   g     --     cc   uuc     a 

>osa-MIR529a (-47.77)   [osa-miR529a:80-99]

             a          agu     --ucacauau    au u 
gaagaagagagag guacagccuu   ucaga          gacu  c u
||||||||||||| ||||||||||   |||||          ||||  |  
CUUCUUCUCUCUC CAUGUCggaa   agucu          cuga  g u
             C          -gu     cauagcuagu    gc u 

>osa-MIR530 (-68.10)   [osa-miR530-5p:11-30] [osa-miR530-3p:129-149]

      g  c         AC         ca  -g       u  agcagcaagcuagcaauacgugcuugaucgcu 
gugaua ag UGCAUUUGC  CUGCACCUA  ga  aggaaga ga                                a
|||||| || |||||||||  |||||||||  ||  ||||||| ||                                u
uacugu uC ACGUAGACG  GACGUGGAu  cu  uccuucu cu                                a
      a  A         GA         cc  ag       -  gguccuuguuguaacacacguucuucgaucgc 

>osa-MIR531 (-63.60)   [osa-miR531:18-41]

       c     cu      C     C        -  C 
ggcgccg cgagc  ugCUCG CGGGG UGCGUGCC GC A
||||||| |||||  |||||| ||||| |||||||| ||  
ccguggc gcucg  gcgagc gcccc acgcgcgg cg U
       a     uu      u     u        u  a 

>hsa-mir-532 (-25.72)   [hsa-miR-532-5p:20-41] [hsa-miR-532-3p:57-78]

c a        cucuccuc  U      A    A   CC  uggca 
 g cuugcuuu        CA GCCUUG GUGU GGA  GU     u
 | ||||||||        || |||||| |||| |||  ||     c
 c gagcgaaa        GU CGGAAC CACA CCU  ca     u
u c        ----aaAC  U      C    C   CC  uuaau 

>mmu-mir-532 (-33.82)   [mmu-miR-532-5p:21-42] [mmu-miR-532-3p:58-79]

c   uuu    u       c  U      A    A   CC  ugaca 
 aga   gcuu uucucuu CA GCCUUG GUGU GGA  GU     u
 |||   |||| ||||||| || |||||| |||| |||  ||     c
 ucu   cgaa gagaggA GU CGGAAC CACA CCU  ca     u
c   -uc    c       C  U      C    C   CC  uuaau 

>fru-let-7h (-33.80)   [fru-let-7h:6-27]

ugu  U                 U     ---------    gaaga 
   gg GAGGUAGUAAGUUGUGU GUUgu         aggg     u
   || ||||||||||||||||| |||||         ||||      
   cc uuccgucauucaacaua caaua         uccc     u
--u  -                 u     gaggacuug    acgug 

>tni-let-7h (-34.80)   [tni-let-7h:18-39]

aauuggcuuugcugu  U                 U      --------    au  ag 
               gg GAGGUAGUAAGUUGUGU GUUguu        gggg  ca  a
               || ||||||||||||||||| ||||||        ||||  ||   
               cc uuccgucauucaacaua caauag        uccc  gu  u
--------------u  -                 u      aggaacug    ac  gu 

>fru-mir-223 (-31.60)   [fru-miR-223:48-68]

----------------     a u              guucuu       uuu 
                cacuu g guauuugacaagcu      gacacuc   a
                ||||| | ||||||||||||||      |||||||   u
                gugaa C CAUAAACUGUUUGA      CUGUgag   a
gucuguucacugugga     C C              ------       cgc 

>tni-mir-223 (-36.90)   [tni-miR-223:57-77]

caggcc        a u              guguuu       u  a 
      cuucacuu g guauuugacaagcu      gacacuc gu u
      |||||||| | ||||||||||||||      ||||||| ||  
      ggagugaa C CAUAAACUGUUUGA      CUGUgag cg c
------        C C              ------       -  u 

>fru-mir-124-3 (-31.30)   [fru-miR-124:52-73]

     gag     u        a   ga        uaauu 
gguuu   cucuu guguucac gug  ccuugauu     u
|||||   ||||| |||||||| |||  ||||||||      
ccgaa   gagAA CGUAAGUG CGC  GGAAUuaa     c
     -ga     C        G   AC        cauaa 

>tni-mir-124-3 (-27.20)   [tni-miR-124:52-73]

gguuugag     u        a   ga        uaauu 
        cucuu guguucac gug  ccuugauu     u
        ||||| |||||||| |||  ||||||||      
        gagAA CGUAAGUG CGC  GGAAUuaa     c
----aaga     C        G   AC        cauaa 

>fru-let-7e (-46.10)   [fru-let-7e:15-36]

    --         uU   GU         A        --------      g 
gcug  uccuugggg  GAG  AGUAGAUUG AUAGUUgu        gggguu u
||||  |||||||||  |||  ||||||||| ||||||||        ||||||  
cgac  aggaauccu  uuc  ucaucuaac uaucaaua        cuccag g
    ag         --   ug         a        gagugauu      u 

>tni-let-7e (-48.40)   [tni-let-7e:15-36]

    --         cU   GU         A        --------      g 
gcug  uccuugggg  GAG  AGUAGAUUG AUAGUUgu        gggguu u
||||  |||||||||  |||  ||||||||| ||||||||        ||||||  
cgac  aggaacccu  uuc  ucaucuaac uaucaaua        cuccag g
    ag         --   ug         a        gaguguau      u 

>fru-mir-219-2 (-32.20)   [fru-miR-219:8-29]

--uc  a  -    U     AA           -cg  ugc 
    gg gc UGAU GUCCA  CGCAAUUCUUg   uc   c
    || || |||| |||||  |||||||||||   ||   u
    cc cg acua caggu  guguugaggac   ag   u
cagu  c  c    -     ag           caa  ugu 

>tni-mir-219-2 (-32.20)   [tni-miR-219:8-29]

--uc  a  -    U     AA           -cg  ugc 
    gg gc UGAU GUCCA  CGCAAUUCUUg   uc   c
    || || |||| |||||  |||||||||||   ||   u
    cc cg acua caggu  guguugaggac   ag   u
cagu  c  c    -     ag           caa  ugu 

>fru-mir-101a (-38.20)   [fru-miR-101a:47-68]

u   c gg                   a    g  cc 
 gcc u  uucaguuaucacagugcug ugcu uc  c
 ||| |  ||||||||||||||||||| |||| ||   
 cgg a  AAGUCAAUAGUGUCAUGAC AUgg ag  a
-   u gG                   -    a  cu 

>tni-mir-101a (-38.20)   [tni-miR-101a:47-68]

u   c gg                   a    g  cc 
 gcc u  uucaguuaucacagugcug ugcu uc  c
 ||| |  ||||||||||||||||||| |||| ||   
 cgg a  AAGUCAAUAGUGUCAUGAC AUgg ag  a
-   u gG                   -    a  cu 

>fru-mir-222 (-30.20)   [fru-miR-222:44-67]

u   uu         g   -     auc   ugu 
 cag  gcucaguag cag uguag   cug   a
 |||  ||||||||| ||| |||||   |||   g
 guC  UGGGUCAUC GUC ACAUC   gac   c
-   UC         G   U     GAc   uaa 

>tni-mir-222 (-30.10)   [tni-miR-222:43-66]

   uu         g   -     auc   ugu 
cag  gcucaguag cag uguag   cug   a
|||  ||||||||| ||| |||||   |||   g
guC  UGGGUCAUC GUC ACAUC   gac   c
   UC         G   U     GAc   uaa 

>fru-mir-221 (-28.60)   [fru-miR-221:47-69]

-----  -u     ug   u         auuu     ugcu 
     cc  gaacc  gca acaauguag    cugug    u
     ||  |||||  ||| |||||||||    |||||    g
     gg  UUUGG  CGU UGUUACAUC    GAcau    g
cgaua  cC     GU   C         ----     cuua 

>tni-mir-221 (-27.00)   [tni-miR-221:47-69]

ccu     ug   u         auuu     ugcu 
   gaacc  gca acaauguag    cugug    u
   |||||  ||| |||||||||    |||||    g
   UUUGG  CGU UGUUACAUC    GAcau    g
--C     GU   C         ----     cuua 

>fru-mir-142a (-47.07)   [fru-miR-142a:15-35]

        g               A         Uaaacucu 
acagugca ucaucCAUAAAGUAG AAGCACUAC        u
|||||||| ||||||||||||||| |||||||||         
ugucaugu aguagguauuucauc uuugugaug        u
        g               c         ugacaccg 

>tni-mir-142a (-47.37)   [tni-miR-142a:17-37]

gu        g               A         Uaaacucu 
  acagugca ucaucCAUAAAGUAG AAGCACUAC        u
  |||||||| ||||||||||||||| |||||||||         
  ugucaugu aguagguauuucauc uuugugaug        c
gu        g               c         ugacaccg 

>fru-mir-9-1 (-40.70)   [fru-miR-9:15-37]

      g c     UC               G      u  cg 
gggguu u uguua  UUUGGUUAUCUAGCU UAUGAg ga  u
|||||| | |||||  ||||||||||||||| |||||| ||  a
cccuaa a acaau  aagccaauagaucga auacuu cu  c
      g -     ga               a      -  aa 

>tni-mir-9-1 (-42.60)   [tni-miR-9:19-41]

caga      g c     UC               G      u  cg 
    gggguu u uguua  UUUGGUUAUCUAGCU UAUGAg ga  u
    |||||| | |||||  ||||||||||||||| |||||| ||  a
    cccuaa a acaau  aagccaauagaucga auacuu cu  c
auua      g -     ga               a      -  aa 

>fru-mir-23a-2 (-38.80)   [fru-miR-23a:48-69]

-      --a gg           a        ----  ug 
 agcugg   g  auuccuggcag gugauuug    gc  u
 ||||||   |  ||||||||||| ||||||||    ||   
 ucgacc   C  UAGGGACCGUU CACUAaau    ug  g
g      aAC UU           A        guaa  ua 

>tni-mir-23a-2 (-38.10)   [tni-miR-23a:48-69]

      --a gg           a        ----  ug 
agcugg   g  auuccuggcag gugauuug    gc  u
||||||   |  ||||||||||| ||||||||    ||   
ucgacc   C  UAGGGACCGUU CACUAaau    ug  g
      aAC UU           A        guaa  ua 

>fru-mir-25 (-39.30)   [fru-miR-25:51-72]

     ug   ag    g     uu g     u   gg ca 
gcugg  uug  aggc gagac  g gcaau gcc  c  u
|||||  |||  |||| |||||  | ||||| |||  |  c
cggcc  gac  UCUG CUCUG  C CGUUA Cgg  g  a
     gu   AG    G     UU A     -   ga ac 

>tni-mir-25 (-39.30)   [tni-miR-25:51-72]

     ug   ag    g     uu g     u   gg ca 
gcugg  uug  aggc gagac  g gcaau gcc  c  u
|||||  |||  |||| |||||  | ||||| |||  |  c
cggcc  gac  UCUG CUCUG  C CGUUA Cgg  g  a
     gu   AG    G     UU A     -   ga ac 

>fru-mir-17-1 (-31.30)   [fru-miR-17:14-35]

   -u u       -CA        A  G     G   --u  u 
guc  g guauugc   AAGUGCUU CA UGCAG UAg   uc a
|||  | |||||||   |||||||| || ||||| |||   || u
cag  c caugacg   uucacgga gu acguc auc   ag g
   uu u       aca        g  a     -   cac  u 

>tni-mir-17-1 (-30.12)   [tni-miR-17:14-35]

   -u u       -CA        A  G     G   uacua 
guc  g guauugc   AAGUGCUU CA UGCAG UAg     u
|||  | |||||||   |||||||| || ||||| |||     g
cag  c caugacg   uucacgga gu acguc auc     u
   uu u       aca        g  a     -   cacaa 

>fru-mir-18 (-26.90)   [fru-miR-18:7-28]

-        --   U   UC   U    A   -  aaau 
 uugugcUA  AGG GCA  UAG GCAG UAg ug    a
 ||||||||  ||| |||  ||| |||| ||| ||    g
 aauacggu  ucc cgu  auc cguc auc ac    a
g        cu   u   ga   c    -   c  gauc 

>tni-mir-18 (-26.90)   [tni-miR-18:7-28]

-        --   U   UC   U    A   -  aaau 
 uugugcUA  AGG GCA  UAG GCAG UAg ug    a
 ||||||||  ||| |||  ||| |||| ||| ||    g
 aauacggu  ucc cgu  auc cguc auc ac    a
g        cu   u   ga   c    -   c  gauc 

>fru-mir-19a (-30.60)   [fru-miR-19a:49-71]

g   uu u  gc             --      u  aagaa 
 cag  c cu  uaguuuugcauag  uugcac ac     u
 |||  | ||  |||||||||||||  |||||| ||      
 guc  g gg  GUCAAAACGUAUC  AACGUG ug     a
-   cg u  uA             UA      U  aggag 

>tni-mir-19a (-30.60)   [tni-miR-19a:49-71]

g   uu u  gc             --      u  aagaa 
 cag  c cu  uaguuuugcauag  uugcac ac     u
 |||  | ||  |||||||||||||  |||||| ||      
 guc  g gg  GUCAAAACGUAUC  AACGUG ug     a
-   cg u  uA             UA      U  aggag 

>fru-mir-19b (-29.80)   [fru-miR-19b:40-62]

           -   -      uc    uuug 
gucaguuuugc ugg uuugca  cagc    u
||||||||||| ||| ||||||  ||||    u
cAGUCAAAACG ACC AAACGU  GUcg    a
           U   U      --    cgcc 

>tni-mir-19b (-35.50)   [tni-miR-19b:53-75]

caaucaucguuu            -   -       ---u    uu 
            ggucaguuuugc ugg uuugcau    cagc  u
            |||||||||||| ||| |||||||    ||||   
            ucAGUCAAAACG ACC AAACGUG    gucg  g
------------            U   U       Ucgu    uu 

>fru-mir-92-2 (-31.00)   [fru-miR-92:38-59]

-----     g     c   a        gug a 
     caggu gggau agu gcaaugcu   c c
     ||||| ||||| ||| ||||||||   |  
     GUCCG CCCUG UCA CGUUAUgg   g u
gaugU     G     U   -        -aa g 

>tni-mir-92-2 (-37.50)   [tni-miR-92:47-68]

cuuccc        g    ug   a        gugu 
      auacaggu ggga  agu gcaaugcu    a
      |||||||| ||||  ||| ||||||||    c
      ugUGUCCG CCCU  UCA CGUUAUgg    u
----ga        G    GU   -        agga 

>fru-mir-184 (-23.70)   [fru-miR-184:53-73]

cgcucacaucu        c      a c     uaua  uuu 
           ccuuauca uuuucc g ccagc    gg   u
           |||||||| |||||| | |||||    ||    
           GGAAUAGU AAGAGG C GGUug    cc   g
----------G        C      - A     ----  uaa 

>tni-mir-184 (-23.10)   [tni-miR-184:53-73]

cgcucacaucu        c      a c     uauag u 
           ccuuauca uuuucc g ccagc     c u
           |||||||| |||||| | |||||     |  
           GGAAUAGU AAGAGG C GGUug     g c
----------G        C      - A     ccuaa u 

>dre-mir-184-2 (-31.40)   [dre-miR-184:49-70]

----     c         c      agcccagcuaacga 
    cacau uccuuauca uuuucc              u
    ||||| ||||||||| ||||||              g
    gugua GGGAAUAGU AAGAGG              g
gucg     C         C      CAGGUugccuaagu 

>fru-let-7a-3 (-40.20)   [fru-let-7a:6-27]

------------     U          GU         --------u       gg 
            caagg GAGGUAGUAG  UGUAUAGUU         gugggau  c
            ||||| ||||||||||  |||||||||         |||||||  u
            guucc uuccauuauc  acauaucaa         cauccua  u
guaacauggaga     -          ug         uaguagacu       gg 

>tni-let-7a-3 (-40.20)   [tni-let-7a:6-27]

------------     U          GU         --------u       gg 
            caagg GAGGUAGUAG  UGUAUAGUU         gugggau  c
            ||||| ||||||||||  |||||||||         |||||||  u
            guucc uuccauuauc  acauaucaa         cauccua  u
guaacauggaga     -          ug         uauuagacu       gg 

>fru-mir-187 (-53.40)   [fru-miR-187:63-82]

guggccauuuggccggg   gg                      ca  ccu 
                 cca  ggcugcaacacaggacaugggu  ug   c
                 |||  ||||||||||||||||||||||  ||    
                 ggu  CCGACGUUGUGUUCUGUGCUcg  ac   u
------------gucga   ga                      cc  ccg 

>tni-mir-187 (-41.20)   [tni-miR-187:41-60]

-----                      cuu  cuc 
     ggcugcaacacaggacaugggu   gc   u
     ||||||||||||||||||||||   ||    
     CCGACGUUGUGUUCUGUGCUcg   cg   g
gguga                      --c  ccc 

>fru-mir-137 (-30.40)   [fru-miR-137:45-66]

      ug   g           ug a     -  g 
cuucgg  acg guauucuuggg  g uaaua cg a
||||||  ||| |||||||||||  | ||||| || u
ggaguu  UGC CAUAAGAAUUC  U AUUgu gc c
      gA   G           GU -     u  a 

>tni-mir-137 (-30.20)   [tni-miR-137:43-64]

-     c   g       ug   --     -a   a 
 ucgac acg guauucu  ggu  ugaua  uac g
 ||||| ||| |||||||  |||  |||||  |||  
 agcug UGC CAUAAGA  UCG  AUUgu  gug a
g     A   G       GU   UU     ag   u 

>tni-mir-204b (-36.22)   [tni-miR-204b:16-37]

a      cua   a UU        UA     U    ggacu 
 ugugac   ugg c  CCCUUUGU  UCCUA GCCU     c
 ||||||   ||| |  ||||||||  ||||| ||||     a
 auacug   acc g  gggaaacg  agggu cggg     a
c      uug   c uu        gg     -    gaaaa 

>fru-mir-458 (-36.30)   [fru-miR-458:45-66]

-   ag       cg      uc        cag  a 
 ugc  acagcag  ccauuu  agagcuau   uc a
 |||  |||||||  ||||||  ||||||||   || c
 acg  uguCGUC  GGUAAA  UCUCGAUA   gg g
c   ga       AU      UU        -cu  u 

>tni-mir-458 (-40.20)   [tni-miR-458:47-68]

    ag       c       uc        cagu   a 
gugc  acggcag gccauuu  agagcuau    gcc g
||||  ||||||| |||||||  ||||||||    |||  
cacg  uguCGUC UGGUAAA  UCUCGAUA    ugg c
    ga       U       UU        ---c   g 

>fru-mir-489 (-39.30)   [fru-miR-489:62-84]

cuucugaua  g    ug c    ug       gc    c       acu    
         cu gugg  g uugg  gucguau  auga gucauuu   ucg 
         || ||||  | ||||  |||||||  |||| |||||||   || a
         ga cauc  c aauC  CGGCAUG  UACU CAGUGAg   agu 
-----caga  a    gu a    GU       UA    A       guu    

>tni-mir-489 (-39.70)   [tni-miR-489:52-74]

-----ug       cc   ug       gc    c       acu    
       guggugg  ugg  gucguau  auga gucauuu   ucg 
       |||||||  |||  |||||||  |||| |||||||   || a
       caucgcc  auC  CGGCAUG  UACU CAGUGAg   agu 
cagagaa       aa   GU       UA    A       guu    

>dre-mir-489 (-42.30)   [dre-miR-489:60-82]

acugacu     --g     ---c   ug             c       ---   u 
       ugagu   guggc    ugg  gucguauguauga gucauuu   acu c
       |||||   |||||    |||  ||||||||||||| |||||||   |||  
       acucg   caucg    auC  CGGCAUGUAUACU CAGUGAg   uga a
----acu     gua     ucaa   GU             A       guu   a 

>fru-mir-192 (-30.60)   [fru-miR-192:15-35]

ugg      -a    AU A     -          C   uaacu 
   gacgug  ggug  G CCUAU GAAUUGACAG Cag     g
   ||||||  ||||  | ||||| |||||||||| |||      
   uugcau  ucac  c ggaug cuugacuguc guc     g
---      cg    -- -     u          c   uccga 

>tni-mir-192 (-29.20)   [tni-miR-192:10-30]

------c   a   gA  A     -          C   uaacu 
       acg ggu  UG CCUAU GAAUUGACAG Cag     g
       ||| |||  || ||||| |||||||||| |||      
       ugc ucg  ac ggaug cuugacuguc guc     g
cccugcc   g   uc  c     u          c   uccga 

>fru-mir-194 (-30.30)   [fru-miR-194:8-28]

-cg   g U         AC     G     g  gu 
   cug a GUAACAGCA  UCCAU UGGaa cu  a
   ||| | |||||||||  ||||| ||||| ||  u
   gac u cauugucgu  aggug accuu ga  g
aga   g c         ga     -     -  gu 

>tni-mir-194 (-30.50)   [tni-miR-194:11-31]

----gcg g   g U         AC     G     -  ug 
       c cug a GUAACAGCA  UCCAU UGGaa gc  u
       | ||| | |||||||||  ||||| ||||| ||  a
       g gac u cauugucgu  aggug accuu ug  u
ccaccua a   g c         ga     -     g  ug 

>fru-mir-142b (-40.47)   [fru-miR-142b:15-36]

       ug   c           A         UAaacuau 
acagugc  uca cCAUAAAGUAG AAGCACUAC        u
|||||||  ||| ||||||||||| |||||||||         
ugucacg  agu gguauuucauc uuugugaug        c
       ug   a           c         ugacacau 

>tni-mir-142b (-40.47)   [tni-miR-142b:15-36]

       ug   c           A         UAaacguc 
acagugc  uca cCAUAAAGUAG AAGCACUAC        u
|||||||  ||| ||||||||||| |||||||||         
ugucacg  agu gguauuucauc uuugugaug        u
       ug   a           c         ugacacau 

>fru-mir-30b (-41.70)   [fru-miR-30b:16-37]

u      u     g U       U   A A       gugau  u 
 uccggc caguu g GUAAACA CCU C CUCAGCU     cc u
 |||||| ||||| | ||||||| ||| | |||||||     || u
 aggucg gucaa u cauuugu gga g gagucgg     gg g
-      -     g u       u   a a       -agac  c 

>tni-mir-30b (-23.50)   [tni-miR-30b:7-28]

---  au   ----       U   A A       ---   auc 
   ag  ggU    GUAAACA CCU C CUCAGCU   gug   u
   ||  |||    ||||||| ||| | |||||||   |||   u
   uc  uca    cauuugu gga g gagucgg   cgc   u
agg  gg   aguu       u   a a       aga   cgu 

>fru-mir-30d (-46.50)   [fru-miR-30d:21-42]

u   cau   a   u    cU         CCC           -g  a 
 gca   ggc guu gagg  GUAAACAUC   GACUGGAAGcu  uc c
 |||   ||| ||| ||||  |||||||||   |||||||||||  || u
 cgu   ccg cag cucc  cauuuguag   cugacuuucga  ag c
u   ccu   c   c    ac         --u           ga  a 

>tni-mir-30d (-41.90)   [tni-miR-30d:15-36]

u   a   u    cU         CCC           g cac 
 ggc guu gagg  GUAAACAUC   GACUGGAAGcu u   u
 ||| ||| ||||  |||||||||   ||||||||||| |    
 ccg cag cucc  cauuuguag   cugacuuucga a   c
u   c   c    cc         --u           g cga 

>fru-mir-27b (-32.10)   [fru-miR-27b:49-70]

-   ca             auug        u  uug 
 agg  cagagcuuagcug    gugaacag ga   a
 |||  |||||||||||||    |||||||| ||   u
 ucc  GUCUUGAAUCGGU    CACUUguu cu   u
g   AC             --GA        u  ccu 

>tni-mir-27b (-32.10)   [tni-miR-27b:49-70]

-   ca             auug        u  uug 
 agg  cagagcuuagcug    gugaacag ga   a
 |||  |||||||||||||    |||||||| ||   u
 ucc  GUCUUGAAUCGGU    CACUUguu cu   u
g   AC             --GA        u  ccu 

>fru-mir-23b (-34.72)   [fru-miR-23b:45-66]

       a  --          -  c      gugac 
ggcugug gg  guuccuggcg ug ugauuu     u
||||||| ||  |||||||||| || ||||||     u
ccgacac CC  UAGGGACCGU AC ACUAaa     a
       A  AU          U  -      auagu 

>tni-mir-23b (-30.12)   [tni-miR-23b:45-66]

   u   a  --          -  c      gugac 
ggc gug gg  guuccuggcg ug ugauuu     c
||| ||| ||  |||||||||| || ||||||     u
ccg cac CC  UAGGGACCGU AC ACUAaa     a
   c   A  AU          U  -      auagu 

>fru-mir-196a-2 (-29.40)   [fru-miR-196a:11-32]

ucga ug   U  GU             U   gucca 
    g  guu AG  AGUUUCAUGUUGU GGG     u
    |  ||| ||  ||||||||||||| |||      
    c  uaa uc  ucaaaguacaacg cuc     u
accc gu   u  ug             u   aaacu 

>tni-mir-196a-2 (-29.40)   [tni-miR-196a:11-32]

ucga ug   U  GU             U   gucca 
    g  guu AG  AGUUUCAUGUUGU GGG     u
    |  ||| ||  ||||||||||||| |||      
    c  uaa uc  ucaaaguacaacg cuc     u
accc gu   u  ug             u   aaacu 

>fru-mir-126 (-20.26)   [fru-miR-126:43-63]

cggcc           u       c cuaugc 
     cauuauuacuu ugguacg g      c
     ||||||||||| ||||||| |      a
     GUAAUAAUGAG GCCAUGC c      c
----C           U       U aacucu 

>tni-mir-126 (-20.26)   [tni-miR-126:43-63]

cggcc           u       c cuaugc 
     cauuauuacuu ugguacg g      c
     ||||||||||| ||||||| |      a
     GUAAUAAUGAG GCCAUGC c      c
----C           U       U aacucu 

>fru-mir-199-3 (-42.80)   [fru-miR-199:17-39]

--------c    cg   u  c  C       U        C      u aga 
         uccc  ucc gc ug CCAGUGU CAGACUAC UGUUCa c   c
         ||||  ||| || || ||||||| |||||||| |||||| |    
         aggg  ggg cg au gguuaca gucugaug acaagu g   u
cgcacacac    uu   u  a  u       c        -      c aaa 

>tni-mir-199-3 (-42.70)   [tni-miR-199:15-37]

-------c    c -    c  C       U        C      u aga 
        ccca c cugc ug CCAGUGU CAGACUAC UGUUCa c   c
        |||| | |||| || ||||||| |||||||| |||||| |    
        gggu g gacg au gguuaca gucugaug acaagu g   u
cacacaca    u a    u  u       c        -      c aac 

>fru-mir-148 (-31.30)   [fru-miR-148:49-70]

c        -              a    ua    cua u 
 uuuccaaa uaaaguucugugau cacu  gacu   g u
 |||||||| |||||||||||||| ||||  ||||   | c
 gaggguuu GUUUCAAGACAUUA GUGA  CUga   c c
u        U              C    --    -cg u 

>tni-mir-148 (-28.40)   [tni-miR-148:43-64]

                 a    uc    c   u 
aaauaaaguucugugau cacu  gacu uga u
||||||||||||||||| ||||  |||| |||  
uuUGUUUCAAGACAUUA GUGA  CUga gcu c
                 C    --    c   c 

>fru-mir-10b-1 (-28.30)   [fru-miR-10b:6-28]

au      -   G     C          ----      
  auaUAC CCU UAGAA CGAAUUUGUG    ugaug 
  |||||| ||| ||||| ||||||||||    |||| g
  uauaug ggg aucuu gcuuagacac    acugc 
--      a   g     a          ugaa      

>tni-mir-10b-2 (-28.40)   [tni-miR-10b:6-28]

au      -   G     C         ----       
  auaUAC CCU UAGAA CGAAUUUGU    Gugauc 
  |||||| ||| ||||| |||||||||    ||||| a
  uauaug ggg aucuu gcuuagaca    cacuga 
--      a   g     a         cuga       

>fru-mir-205 (-28.40)   [fru-miR-205:10-31]

---   g uc  UC      U    C        ua  ug 
   ugu u  ua  CUUCAU CCAC GGAGUCUG  ug  u
   ||| |  ||  |||||| |||| ||||||||  ||   
   aca a  au  gaagug ggug cuuuagac  au  a
ggu   g ga  gu      u    a        ca  uu 

>tni-mir-205 (-22.64)   [tni-miR-205:3-24]

----  UC      U    C        uaacug 
    ua  CUUCAU CCAC GGAGUCUG      u
    ||  |||||| |||| ||||||||       
    au  gaagug ggug cuuuagac      u
gaga  gu      u    a        caauuu 

>fru-mir-365 (-39.70)   [fru-miR-365:55-76]

--------ca      aa        ac           -----    u   u 
          gcaaga  agugaggg  uuuuaggggca     gcug guu u
          ||||||  ||||||||  |||||||||||     |||| ||| a
          cguucu  uUAUUCCU  AAAAUCCCCGU     ugac caa u
caacuguuaa      cg        -A           AAUac    c   u 

>tni-mir-365 (-39.70)   [tni-miR-365:55-76]

-----ca      aa        ac           -----    u   u 
       gcaaga  agugaggg  uuuuaggggca     gcug guu u
       ||||||  ||||||||  |||||||||||     |||| ||| a
       cguucu  uUAUUCCU  AAAAUCCCCGU     ugac caa u
cuguuaa      cg        -A           AAUac    c   u 

>fru-mir-193 (-39.70)   [fru-miR-193:50-71]

-------  u      ag     u     cg   aaggugaguccu 
       ug gucaga  cuggg cuuug  ggc            c
       || ||||||  ||||| |||||  |||            a
       ac cggucu  GACCC GAAAC  CCG            g
ccaaugc  u      cU     U     AU   GUCAAcuuguuu 

>tni-mir-193 (-34.20)   [tni-miR-193:45-66]

------------    a      u     cg   aaggugaguccu 
            caga gcuggg cuuug  ggc            c
            |||| |||||| |||||  |||            a
            gucu UGACCC GAAAC  CCG            g
ccagugcacucg    g      U     AU   GUCAAcuuguuu 

>fru-mir-124-1 (-30.30)   [fru-miR-124:51-72]

gguugu      cc        a   ga        -   u 
      gucucu  guguucac gcg  ccuugauu uaa g
      ||||||  |||||||| |||  |||||||| |||  
      uagagA  CGUAAGUG CGC  GGAAUuaa auu u
------      AC        G   AC        c   c 

>tni-mir-124-1 (-26.80)   [tni-miR-124:43-64]

    cc        a   ga        -   u 
cucu  guguucac gcg  ccuugauu uaa g
||||  |||||||| |||  |||||||| |||  
gagA  CGUAAGUG CGC  GGAAUuaa auu u
    AC        G   AC        c   c 

>fru-mir-217 (-35.60)   [fru-miR-217:27-48]

augaagagc   c ug    g  u a  C         A    A    c   ug 
         cuu u  augc ga g UA UGCAUCAGG ACUG UUGG uga  c
         ||| |  |||| || | || ||||||||| |||| |||| |||   
         gaa a  uacg cu c gu acguagucc ugac aacc auu  u
--------a   - gu    a  u c  u         a    -    c   uu 

>tni-mir-217 (-31.00)   [tni-miR-217:16-37]

--uc ug    g  u a  C         A    A    ---      
    u  augu ga g UA UGCAUCAGG ACUG UUGG   cugau 
    |  |||| || | || ||||||||| |||| ||||   |||| g
    a  uacg cu c gu acguagucc ugac aacc   gauuc 
agaa gu    a  u c  u         a    -    cau      

>fru-mir-216a (-27.50)   [fru-miR-216a:7-28]

u     A        CU   AAC      --uc  uc 
 uggua AAUCUCAG  GGC   UGUGAg    gu  a
 ||||| ||||||||  |||   ||||||    ||   
 aucgu uuaggguc  ccg   acacuc    cg  c
a     a        -u   gua      ucgu  au 

>tni-mir-216a (-26.20)   [tni-miR-216a:7-28]

u     A        CU   AAC      --uc  uc 
 uggug AAUCUCAG  GGC   UGUGAg    gu  a
 ||||| ||||||||  |||   ||||||    ||   
 aucgu uuaggguc  ccg   acacuc    cg  c
a     a        -u   gua      ucgu  au 

>fru-mir-216b (-30.60)   [fru-miR-216b:9-30]

--u      uU       G    CAAC     ug      
   gacugu  AAUCUCU CAGG    UGUGA  guguu 
   ||||||  ||||||| ||||    |||||  |||| u
   uugacg  uuagaga gucc    acacu  uauau 
uau      uc       g    acua     cu      

>tni-mir-216b (-30.50)   [tni-miR-216b:9-30]

--u      uU       G    CAAC     ug      
   gacugu  AAUCUCU CAGG    UGUGA  gugau 
   ||||||  ||||||| ||||    |||||  |||| u
   uugacg  uuagaga gucc    acacu  uauuu 
uau      uc       g    acua     cu      

>fru-let-7i (-38.90)   [fru-let-7i:6-27]

c    U                 U   --------   u    u u 
 uggc GAGGUAGUAGUUUGUGC GUU        ggu gggu g g
 |||| ||||||||||||||||| |||        ||| |||| | a
 aucg uuccgucaucgaacgcg cag        ucg cccg c c
-    -                 u   uagaggua   -    u a 

>tni-let-7i (-38.90)   [tni-let-7i:6-27]

c    U                 U   --------   u    u u 
 uggc GAGGUAGUAGUUUGUGC GUU        ggu gggu g g
 |||| ||||||||||||||||| |||        ||| |||| | a
 aucg uuccgucaucgaacgcg cag        ucg cccg c c
-    -                 u   uagaggua   -    u a 

>fru-mir-10b-2 (-32.10)   [fru-miR-10b:13-35]

         a   AC        AC  A       uga     
guugucuau ugU  CCUGUAGA  CG AUUUGUG   guuc 
||||||||| |||  ||||||||  || |||||||   ||| c
caacgggua aua  ggacaucu  gc ugaacgc   caga 
         c   -a        cu  a       uga     

>tni-mir-10b-1 (-32.30)   [tni-miR-10b:13-35]

         a   AC        AC  A       uga  u 
guugucuau ugU  CCUGUAGA  CG AUUUGUG   gu c
||||||||| |||  ||||||||  || |||||||   ||  
caacgggua aua  ggacaucu  gc ugaacac   ca a
         c   -a        cu  a       uga  g 

>fru-mir-196a-1 (-41.00)   [fru-miR-196a:16-37]

     ga        U          A          gau    
agcug  gcgugguu AGGUAGUUUC UGUUGUUGGG   ggc 
|||||  |||||||| |||||||||| ||||||||||   || u
uugac  ugcauuag uccgucaaag acaacggcuc   ccu 
     --        u          a          ggu    

>tni-mir-196a-1 (-42.60)   [tni-miR-196a:16-37]

----------------     ga        U          A          gau    
                agcug  gcgugguu AGGUAGUUUC UGUUGUUGGG   ggc 
                |||||  |||||||| |||||||||| ||||||||||   || u
                uugac  ugcauuag uccgucaaag acaacggcuc   ccu 
cgggaacuacuucugc     --        u          a          ggu    

>fru-mir-429 (-27.00)   [fru-miR-429:51-72]

ccuguu   a     cu         ug        uaau 
      gau ggcgu  uaccagaca  guuagaug    u
      ||| |||||  |||||||||  ||||||||     
      cUG CCGUA  AUGGUCUGU  UAAUcugu    a
---uac   -     --         CA        uguu 

>tni-mir-429 (-34.30)   [tni-miR-429:53-74]

a   ug     a    u -          ug        uaau 
 gcc  uugau ggcg c uuaccagaca  guuagaug    u
 |||  ||||| |||| | ||||||||||  ||||||||     
 cgg  aauua cUGC G AAUGGUCUGU  UAAUcugu    a
a   ua     c    C U          CA        uguu 

>fru-mir-200a (-36.10)   [fru-miR-200a:50-71]

---u       uc    -     c       c    uugu  u 
    cucagga  cauc uuacc gacagug ugga    ac a
    |||||||  |||| ||||| ||||||| ||||    ||  
    gggucuu  GUAG AAUGG CUGUCAC AUcu    ug c
cagu       uU    C     U       A    -ugu  u 

>tni-mir-200a (-25.20)   [tni-miR-200a:40-61]

--    -     u       c    uuau  u 
  cauc uuacc gacagug ugga    ac a
  |||| ||||| ||||||| ||||    ||  
  GUAG AAUGG CUGUCAC AUcu    ug c
uU    C     U       A    -ugu  u 

>fru-mir-200b (-27.52)   [fru-miR-200b:50-71]

ggu       uc   cu   g      c      uauca 
   gauuauc  cau  uac aggcag auugga     u
   |||||||  |||  ||| |||||| ||||||     c
   cuaguAG  GUA  AUG UCCGUC UAAUcu     a
--g       UA   --   G      A      cuuuc 

>tni-mir-200b (-25.00)   [tni-miR-200b:39-60]

-----------------c    -    g      c      --u  c 
                  cauc uuac aggcag auugga   ag a
                  |||| |||| |||||| ||||||   || u
                  GUAG AAUG UCCGUC UAAUcu   uc c
ggacgucugcugcuaguA    U    G      A      uuu  a 

>fru-mir-218b (-31.10)   [fru-miR-218b:11-32]

    a  -   UU       AUC        CA ug a 
cagg cc cca  GUGCUUG   UAACCAUG  g  c u
|||| || |||  |||||||   ||||||||  |  | c
guuc gg ggu  cacgaac   guugguac  u  g g
    -  a   uc       cgu        -c gu u 

>tni-mir-218b (-30.60)   [tni-miR-218b:11-32]

    a  -   UU       AUC        ----   ug 
cagg cc cca  GUGCUUG   UAACCAUG    CAg  c
|||| || |||  |||||||   ||||||||    |||   
guuc gg ggu  cacgaac   guugguac    guc  g
    -  a   uc       cgu        cugu   cu 

>fru-mir-301 (-22.70)   [fru-miR-301:44-65]

cagc    u       ---        a   uacca 
    ugcu ugacaau   guugcacu cug     u
    |||| |||||||   |||||||| |||      
    acGA ACUGUUA   UAACGUGA gau     c
---u    U       UGA        C   cuuac 

>tni-mir-301 (-32.20)   [tni-miR-301:48-69]

       c    c       ---        a   uacca 
aggucag ugcu ugacaau   guugcacu cug     u
||||||| |||| |||||||   |||||||| |||      
uccgguu acGA ACUGUUA   UAACGUGA gau     c
       u    U       UGA        C   cuuac 

>fru-mir-130 (-27.90)   [fru-miR-130:52-73]

uguuguu u  uc         uc        ca  g a a 
       g cc  ugcccuuuu  uguugcac  cu g c c
       | ||  |||||||||  ||||||||  || | | u
       c gg  ACGGGAAAA  AUAACGUG  ga u g g
-----gu -  uU         UU        AC  g a a 

>tni-mir-130 (-27.60)   [tni-miR-130:49-70]

uguugu  uc         uc        ca  g a a 
      cc  ugcccuuuu  uguugcac  cu g c c
      ||  |||||||||  ||||||||  || | | u
      gg  ACGGGAAAA  AUAACGUG  ga u g g
-----c  uU         UU        AC  g a a 

>fru-let-7a-2 (-33.22)   [fru-let-7a:4-25]

   U   GU                ---------uu    u 
ggg GAG  AGUAGGUUGUAUAGUU           aggg u
||| |||  ||||||||||||||||           |||| a
ucc uuc  ucauucaacauaucaa           uccc u
   u   ug                uagacuguccu    a 

>tni-let-7a-2 (-33.62)   [tni-let-7a:12-33]

guccuuug   U   GU                ---------uu    u 
        ggg GAG  AGUAGGUUGUAUAGUU           aggg u
        ||| |||  ||||||||||||||||           |||| a
        ucc uuc  ucauucaacauaucaa           uccc u
--------   u   ug                uagacuguccu    a 

>fru-mir-122 (-32.40)   [fru-miR-122:6-27]

      GG       C           uuucc 
agcuaU  AGUGUGA AAUGGUGUUUG     u
||||||  ||||||| |||||||||||      
ucgaua  ucacacu uuaccgcaaac     u
      aa       a           uuucu 

>tni-mir-122 (-32.40)   [tni-miR-122:6-27]

      GG       C           ugucc 
agcugU  AGUGUGA AAUGGUGUUUG     u
||||||  ||||||| |||||||||||      
ucgaua  ucacacu uuaccgcaaac     u
      aa       a           uuucu 

>fru-mir-218a-1 (-43.30)   [fru-miR-218a:11-32]

    u      U         CU          ccc   c 
cggc gucucU GUGCUUGAU  AACCAUGUGg   cgc u
|||| |||||| |||||||||  ||||||||||   ||| a
gucg caggga cgcgaacug  uugguacacu   gug u
    c      c         cc          aca   u 

>tni-mir-218a-1 (-43.30)   [tni-miR-218a:11-32]

    u      U         CU          ccc   c 
cggc gucucU GUGCUUGAU  AACCAUGUGg   cgc u
|||| |||||| |||||||||  ||||||||||   ||| a
gucg caggga cgcgaacug  uugguacacu   gug u
    c      c         cc          aaa   u 

>fru-let-7d (-37.91)   [fru-let-7d:15-36]

u   -        u U   G   UU            -  gcauaaua 
 gug cucugcag g GAG UAG  GGUUGUAUGGUU uc        a
 ||| |||||||| | ||| |||  |||||||||||| ||        a
 cac gaggcguc c uuc auc  ccaacaugucaa ag        c
-   u        c u   g   uu            u  aggcacga 

>tni-let-7d (-37.91)   [tni-let-7d:15-36]

u   -        u U   G   UU            -  gcauaaua 
 gug cucugcag g GAG UAG  GGUUGUAUGGUU uc        a
 ||| |||||||| | ||| |||  |||||||||||| ||        a
 cac gaggcguc c uuc auc  ccaacaugucaa ag        c
-   u        c u   g   uu            u  aggcacga 

>fru-mir-9-2 (-30.10)   [fru-miR-9:8-30]

   g   UC               ---GU      g 
guu uua  UUUGGUUAUCUAGCU     AUGAgu u
||| |||  |||||||||||||||     |||||| u
caa aau  aagccaauagaucga     ugcucg c
   a   ga               aauac      u 

>tni-mir-9-2 (-30.10)   [tni-miR-9:8-30]

   g   UC               ---GU      g 
guu uua  UUUGGUUAUCUAGCU     AUGAgu u
||| |||  |||||||||||||||     |||||| u
caa aau  aagccaauagaucga     ugcucg c
   a   ga               aauac      u 

>fru-mir-460 (-26.40)   [fru-miR-460:43-64]

--    uc ug       ca a      aaa   u 
  cagu  c  cauugua  c cugugc   uca u
  ||||  |  |||||||  | ||||||   |||  
  gucG  G  GUAACAU  G GACACg   ggu u
gu    UA GU       AC C      -aa   c 

>tni-mir-460 (-26.60)   [tni-miR-460:43-64]

--    uc ug       ca a      aaa   a 
  cagu  c  cauugua  c cugugc   uca u
  ||||  |  |||||||  | ||||||   |||  
  gucG  G  GUAACAU  G GACACg   ggu u
gu    UA GU       AC C      -aa   c 

>fru-mir-21 (-35.80)   [fru-miR-21:8-30]

u    a        U       G     G  -  ua 
 guca aUAGCUUA CAGACUG UGUUG Cu gu  a
 |||| |||||||| ||||||| ||||| || ||  g
 cagu ugucggau gucugac acagc ga cg  a
a    c        -       a     g  a  uu 

>tni-mir-21 (-41.80)   [tni-miR-21:39-61]

auugucgucuuuacaucugucacu     cc     a       A        G     G  -  ua 
                        cucgg  uguca aUAGCUU UCAGACUG UGUUG Cu gu  a
                        |||||  ||||| ||||||| |||||||| ||||| || ||  g
                        gggcu  acagu ugucgga agucugac acagc ga cg  a
-------------ucuacuuucuc     uu     c       -        a     g  a  uu 

>fru-mir-153b (-38.10)   [fru-miR-153b:50-71]

----     c      -           gu -       --   ac 
    caucu ccagug ucauuuuugug  u ugcagcu  agu  u
    ||||| |||||| |||||||||||  | |||||||  |||   
    gugga gguuaC AGUAAAAACAC  A ACGUUga  ucg  c
cagu     c      G           UG U       cc   gu 

>tni-mir-153b (-38.10)   [tni-miR-153b:50-71]

----     c      -           gu -       --   ac 
    caucu ccagug ucauuuuugug  u ugcagcu  agu  u
    ||||| |||||| |||||||||||  | |||||||  |||   
    gugga gguuaC AGUAAAAACAC  A ACGUUga  ucg  c
cagu     c      G           UG U       cc   gu 

>fru-mir-199-2 (-33.20)   [fru-miR-199:8-30]

cc     C       U        C   U   gaag 
  gccug CCAGUGU CAGACUAC UGU Cag    u
  ||||| ||||||| |||||||| ||| |||     
  cggau gguuaca gucugaug aca guu    a
gu     u       c        -   u   ggug 

>tni-mir-199-2 (-33.20)   [tni-miR-199:8-30]

cc     C       U        C   U   gaag 
  gccug CCAGUGU CAGACUAC UGU Cag    u
  ||||| ||||||| |||||||| ||| |||     
  cggau gguuaca gucugaug aca guu    a
gu     u       c        -   u   ggug 

>fru-mir-181b-1 (-31.20)   [fru-miR-181b:14-35]

--aaa  u    aucAA         CUG           aa  g 
     gg caca     CAUUCAUUG   UCGGUGGGuuu  cu u
     || ||||     |||||||||   |||||||||||  ||  
     cc gugu     guaaguagc   agucacucgag  gg a
uagac  u    -caac         --a           aa  u 

>tni-mir-181b-1 (-31.20)   [tni-miR-181b:14-35]

--aaa  u    aucAA         CUG           aa  g 
     gg caca     CAUUCAUUG   UCGGUGGGuuu  cu u
     || ||||     |||||||||   |||||||||||  ||  
     cc gugu     guaaguagc   agucacucgag  gg a
uagac  u    -caac         --a           aa  u 

>fru-mir-181a-1 (-32.60)   [fru-miR-181a:14-36] [fru-miR-181a*:55-76]

gcuc   c   u A   U      CU       A    gag  a 
    gcc cgg g ACA UCAACG  GUCGGUG GUuu   cu a
    ||| ||| | ||| ||||||  ||||||| ||||   || a
    cgg gcc C UGU AGUUGC  CAGCUAC CAaa   gg u
----   u   C A   U      --       -    -aa  u 

>tni-mir-181a-1 (-35.10)   [tni-miR-181a:14-36] [tni-miR-181a*:55-76]

gcuc   c   u A   U      CU       A    gag  a 
    gcc cgg g ACA UCAACG  GUCGGUG GUuu   cc a
    ||| ||| | ||| ||||||  ||||||| ||||   || a
    cgg gcc C UGU AGUUGC  CAGCUAC CAaa   gg u
----   u   C A   U      --       -    -aa  u 

>fru-mir-338 (-40.60)   [fru-miR-338:52-73]

ggauu             c   -         ccu    cacu 
     cucccugcaacaa auc cuggugcug   gagu    u
     ||||||||||||| ||| |||||||||   ||||    u
     ggggggcGUUGUU UAG GACUACGAC   CUca    c
-----             U   U         ---    aaca 

>tni-mir-338 (-40.60)   [tni-miR-338:52-73]

ggauu             c   -         ccu    cacu 
     cucccugcaacaa auc cuggugcug   gagu    u
     ||||||||||||| ||| |||||||||   ||||    u
     ggggggcGUUGUU UAG GACUACGAC   CUca    c
-----             U   U         ---    aaca 

>fru-mir-7 (-40.50)   [fru-miR-7:18-38]

cccu     c      g   A     A       U      uuu    a 
    gucug ugcugu UGG AGACU GUGAUUU GUUguu   aguu g
    ||||| |||||| ||| ||||| ||||||| ||||||   |||| a
    cggac acgaca acc ucuga cacuaaa caacag   ucaa u
----     -      a   g     -       -      ---    c 

>tni-mir-7 (-24.40)   [tni-miR-7:1-23]

------U       U        U    U ug  gu 
       GGAAGAC AGUGAUUU GUUG u  gu  c
       ||||||| |||||||| |||| |  ||   
       ccuucug uuacuaaa caac a  ua  a
cgucacu       -        -    - gu  aa 

>fru-mir-153a (-32.30)   [fru-miR-153a:45-66]

      -             gu       -a  aa 
ccagug ucauuuuugugau  ugcagcu  gu  u
|||||| |||||||||||||  |||||||  ||  a
gguuaC AGUGAAAACACUG  ACGUUga  cg  u
      U             AU       cc  ag 

>tni-mir-153a (-28.10)   [tni-miR-153a:46-67]

      -        u     gu       -a  aa 
ccagug ucauuuuu gugau  ugcagcu  gu  u
|||||| |||||||| |||||  |||||||  ||  a
gguuaC AGUGAAAA CACUG  ACGUUga  cg  u
      U        -     AU       ac  aa 

>fru-let-7j (-31.70)   [fru-let-7j:4-25]

gucU         U           ugagggucugugauu 
    GAGGUAGUU UUUGUACAGUU               c
    ||||||||| |||||||||||               u
    uuccgucag gaacaugucaa               g
-ccg         u           ucgaggacauacccc 

>tni-let-7j (-31.70)   [tni-let-7j:4-25]

gucU         U           ugagggucugugauu 
    GAGGUAGUU UUUGUACAGUU               c
    ||||||||| |||||||||||               u
    uuccgucag gaacaugucaa               g
-ccg         u           ucgaggacauacccc 

>dre-let-7j (-34.60)   [dre-let-7j:4-25]

   U        U            --------uu      cu u 
ggu GAGGUAGU GUUUGUACAGUU          uagggu  g u
||| |||||||| ||||||||||||          ||||||  | a
ccg uuccguca cagacaugucaa          gucccg  c u
   -        u            ucgaggaauu      -u u 

>fru-let-7b (-46.40)   [fru-let-7b:6-27]

     U                     uca  g  g    uuu 
caggg GAGGUAGUAGGUUGUGUGGUU   gg uu ugau   g
||||| |||||||||||||||||||||   || || ||||    
guccc uuccgucauccaacauaucaa   uc ag acua   c
     -                     ---  g  g    ccc 

>tni-let-7b (-46.40)   [tni-let-7b:6-27]

     U                     uca  g  g    uuu 
caggg GAGGUAGUAGGUUGUGUGGUU   gg uu ugau   g
||||| |||||||||||||||||||||   || || ||||    
guccc uuccgucauccaacauaucaa   uc ag acua   c
     -                     ---  g  g    ccc 

>fru-mir-128-2 (-26.70)   [fru-miR-128:44-65]

----- a           uua      ca     g ag 
     g agagggggccg   cacugu  gagau u  u
     | |||||||||||   ||||||  ||||| |  c
     c UUUUCUCUGGC   GUGACA  CUcug g  u
gucgu c           CAA      --     g ag 

>tni-mir-128-2 (-28.70)   [tni-miR-128:44-65]

---g    --        uua      ca     g ag 
    agga  gggggccg   cacugu  gagau u  u
    ||||  ||||||||   ||||||  ||||| |  c
    uccU  UCUCUGGC   GUGACA  CUcug g  u
gucg    UU        CAA      --     g ag 

>fru-mir-144 (-31.70)   [fru-miR-144:47-66]

      c  g          a       -a    au 
ccugga ag auaucaucua uacugua  guuu  u
|||||| || |||||||||| |||||||  ||||  a
ggaccu UC UGUAGUAGAU AUGACAU  caga  a
      a  A          -       ca    ga 

>tni-mir-144 (-31.10)   [tni-miR-144:48-67]

c      c  g         u        -a   uaa 
 ccugga ag auaucaucu auacugua  guu   u
 |||||| || ||||||||| ||||||||  |||   a
 ggaccu UC UGUAGUAGA UAUGACAU  cag   a
-      a  A         -        ca   uga 

>fru-mir-30c (-44.80)   [fru-miR-30c:9-30]

--     a          -   UA          guc    c 
  ucagg agUGUAAACA UCC  CACUCUCGGc   cgcc c
  ||||| |||||||||| |||  ||||||||||   ||||  
  agucc ucacguuugu agg  gugggggccg   gugg c
uc     g          c   --          ---    u 

>tni-mir-30c (-46.20)   [tni-miR-30c:10-31]

-u     g          -   UA          guc    c 
  ucagg agUGUAAACA UCC  CACUCUCGGc   cgcc c
  ||||| |||||||||| |||  ||||||||||   ||||  
  ggucc ucacguuugu agg  gugggggccg   gugg c
uc     g          c   --          ---    u 

>fru-mir-140 (-37.20)   [fru-miR-140:3-24]

---   A             A      gu    uc 
   guC GUGGUUUUACCCU UGGUAG  gaca  a
   ||| ||||||||||||| ||||||  ||||   
   cag caccaagauggga accauc  uugu  u
ggg   g             c      --    cg 

>tni-mir-140 (-37.20)   [tni-miR-140:3-24]

---   A             A      gu    uc 
   guC GUGGUUUUACCCU UGGUAG  gaca  a
   ||| ||||||||||||| ||||||  ||||   
   cag caccaagauggga accauc  uugu  u
ggg   g             c      --    cg 

>fru-mir-124-2 (-28.42)   [fru-miR-124:52-73]

cuggu     cuc        a   ga        uaaau 
     cucuc   guguucac gcg  ccuugauu     g
     |||||   |||||||| |||  ||||||||     u
     gagag   CGUAAGUG CGC  GGAAUuaa     c
-----     AAC        G   AC        cauac 

>tni-mir-124-2 (-28.62)   [tni-miR-124:49-70]

gc     cuc        a   ga        uaaau 
  cucuc   guguucac gcg  ccuugauu     g
  |||||   |||||||| |||  ||||||||     u
  gagag   CGUAAGUG CGC  GGAAUuaa     c
--     AAC        G   AC        cauac 

>fru-mir-214 (-53.70)   [fru-miR-214:65-85]

caggaugagacu     g  g             aca            accu 
            guugu gu ugucugccugucu   cuugcugugcag    u
            ||||| || |||||||||||||   ||||||||||||    c
            cgacg ua acaGACGGACAGA   GGACGACAuguc    u
----------cc     g  g             CAC            cucg 

>tni-mir-214 (-49.40)   [tni-miR-214:50-70]

---------  g  g             aca            accu 
         gu gu ugucugccugucu   cuugcugugcag    u
         || || |||||||||||||   ||||||||||||    c
         cg ua acaGACGGACAGA   GGACGACAuguc    u
ucaccccga  g  g             CAC            cucg 

>fru-mir-199-1 (-35.30)   [fru-miR-199:15-37]

u  -   u c   auC       U        C   ---    ga 
 cc ugc c guc   CCAGUGU CAGACUAC UGU   UCag  u
 || ||| | |||   ||||||| |||||||| |||   ||||  u
 gg acg g cag   gguuaca gucugaug aca   gguc  u
-  u   u a   auu       c        -   ugu    au 

>tni-mir-199-1 (-40.00)   [tni-miR-199:14-36]

   -    c   caC       U        C   U    guc 
ccg gcuc guc   CCAGUGU CAGACUAC UGU Cauu   a
||| |||| |||   ||||||| |||||||| ||| ||||    
ggc cggg cag   gguuaca gucugaug aca gugg   u
   a    u   auu       c        -   u    uca 

>fru-mir-455 (-41.50)   [fru-miR-455:15-36]

  c   u ug  g          U      A   C   gaa 
cc ugg g  ag gUAUGUGCCC UGGACU CAU Gug   g
|| ||| |  || |||||||||| |||||| ||| |||    
gg acu c  uc cauauacggg accuga gua cac   c
  u   c gu  a          u      c   c   gac 

>tni-mir-455 (-39.30)   [tni-miR-455:15-36]

  c   u ug   -          U      A   C   gaa 
cc uga g  agg gUAUGUGCCC UGGACU CAU Gug   g
|| ||| |  ||| |||||||||| |||||| ||| |||    
gg acu c  uuc cauauacggg accuga gua cac   c
  a   - cu   a          u      c   c   gac 

>fru-mir-135b (-42.10)   [fru-miR-135b:16-37]

augcc       c            U        C   -    a 
     cagugca ugUAUGGCUUUU AUUCCUAU UGa cugu c
     ||||||| |||||||||||| |||||||| ||| ||||  
     gucgcgu acguaccgaagg uagggaua acu gaua u
-----       c            -        u   u    g 

>tni-mir-135b (-47.50)   [tni-miR-135b:14-35]

g         c            U        C   -  g a 
 cccagugcg ugUAUGGCUUUU AUUCCUAU UGa cu u c
 ||||||||| |||||||||||| |||||||| ||| || |  
 gggucgcgc acguaccgaagg uagggaua acu ga a u
-         c            -        u   u  g g 

>dre-mir-135b (-40.60)   [dre-miR-135b:13-34]

    uu    c           U        C    aa  g 
cucu  gccc gUAUGGCUUUU AUUCCUAU UGag  uu c
||||  |||| ||||||||||| |||||||| ||||  ||  
gggg  cggg cguaccgaagg uagggaua acuc  ga u
    -u    a           -        u    ag  c 

>fru-mir-196b (-23.20)   [fru-miR-196b:8-29]

ugugaua            A   G   GGcuga  u 
       UAGGUAGUUUCA GUU UUG      ac c
       |||||||||||| ||| |||      ||  
       guccgucaaagu caa gac      ug u
----uga            c   g   -acuag  u 

>tni-mir-196b (-20.30)   [tni-miR-196b:8-29]

ugugaugUA          A   G   GGcuaa  u 
         GGUAGUUUCA GUU UUG      ac u
         |||||||||| ||| |||      ||  
         ccgucaaagu caa gac      ug u
----uuagc          c   g   -acuag  g 

>fru-mir-129-1 (-38.90)   [fru-miR-129:14-35]

       a     -       C   CU      G  --   -  u 
guccuuc cgaau CUUUUUG GGU  GGGCUU CU  guu cu u
||||||| ||||| ||||||| |||  |||||| ||  ||| || a
caggagg guuua gaaaaac cca  cccgaa gg  uaa gg c
       c     c       c   uu      g  uc   u  u 

>tni-mir-129-1 (-36.32)   [tni-miR-129:14-35]

       a     -       C   CU      G   uucuc 
guccuuc cgaau CUUUUUG GGU  GGGCUU CUg     u
||||||| ||||| ||||||| |||  |||||| |||     g
cgggggg guuua gaaaaac cca  cccgaa ggc     c
       c     c       c   uu      -   ccacu 

>fru-mir-26 (-49.60)   [fru-miR-26:15-36]

--a    u gg     UU         C           -  ua 
   ggcc c  ccugg  CAAGUAAUC AGGAUAGGCUg gu  a
   |||| |  |||||  ||||||||| ||||||||||| ||  c
   ccgg g  ggacu  guucauuag ucuuauccggc cg  c
gug    u aa     gu         u           a  uc 

>tni-mir-26 (-51.00)   [tni-miR-26:20-41]

  guua    u gg     UU         C           -  ua 
gc    ggcc c  ccugg  CAAGUAAUC AGGAUAGGCUg gu  a
||    |||| |  |||||  ||||||||| ||||||||||| ||  c
cg    ccgg g  ggacu  guucauuag ucuuauccggc cg  c
  accg    u aa     gu         u           a  uc 

>fru-mir-101b (-38.90)   [fru-miR-101b:52-73]

--  -a      c                    c c    g  uc 
  ug  acuguc auuuucaguuaucaugguac g ugcu ug  c
  ||  |||||| |||||||||||||||||||| | |||| ||  c
  ac  ugacgg uaGAAGUCAAUAGUAUCAUG C AUga ac  u
cu  cg      u                    A -    -  uc 

>tni-mir-101b (-38.20)   [tni-miR-101b:52-73]

--  -a      c                    c c    g  uc 
  ug  acuguc auuuucgguuaucaugguac g ugcu ug  c
  ||  |||||| |||||||||||||||||||| | |||| ||  c
  ac  ugacgg uaGAAGUCAAUAGUAUCAUG C AUga ac  u
cu  cg      u                    A -    -  uc 

>fru-mir-9-4 (-33.30)   [fru-miR-9:14-36]

-          u   C       A       G     guuua 
 ggguuaguuu uaU UUUGGUU UCUAGCU UAUGA     u
 |||||||||| ||| ||||||| ||||||| |||||      
 cuuaaucaaa aug aagccaa agaucga auacu     g
c          u   u       g       a     auaau 

>tni-mir-9-4 (-33.10)   [tni-miR-9:14-36]

-          u   C       A       G     guuua 
 ggguuaguuu uaU UUUGGUU UCUAGCU UAUGA     u
 |||||||||| ||| ||||||| ||||||| |||||      
 cuuaaucaaa aug aagccaa agaucga auacu     g
c          c   u       g       a     auaau 

>fru-mir-181b-2 (-29.30)   [fru-miR-181b:11-32]

gcu    auaAA         CU           ucua 
   cgca     CAUUCAUUG  GUCGGUGGGuu    u
   ||||     |||||||||  |||||||||||    g
   gcgu     guaaguaac  cagucacucga    g
--g    cagaa         --           uaac 

>tni-mir-181b-2 (-28.90)   [tni-miR-181b:11-32]

gcu    auaAA         CU           ucca 
   cgca     CAUUCAUUG  GUCGGUGGGuu    u
   ||||     |||||||||  |||||||||||    g
   gcgu     guaaguaac  cagucgcucga    g
--g    cagaa         --           uaac 

>fru-mir-103 (-36.60)   [fru-miR-103:50-72]

    c    --uu     u  u           c   -u ua 
cucu cgcu    uagcc cu uacagugcugc uug  c  a
|||| ||||    ||||| || ||||||||||| |||  |  u
gaga gcga    AUCGG GA AUGUUACGACG Aac  g  c
    u    cAGU     -  C           -   uu ua 

>tni-mir-103 (-42.30)   [tni-miR-103:54-76]

uug         --uu     u  u           c   cu ua 
   cucuacgcu    uagcc cu uacagugcugc uug  c  c
   |||||||||    ||||| || ||||||||||| |||  |  u
   gagaugcga    AUCGG GA AUGUUACGACG Aac  g  c
---         cAGU     -  C           -   uu ua 

>fru-mir-107 (-36.50)   [fru-miR-107:52-74]

-      c   u    --   u  u           c   - g    
 uucugu ugc guga  gcu cu uacaguguugc uug u gca 
 |||||| ||| ||||  ||| || ||||||||||| ||| | || u
 gagaca acg cACU  CGG GA AUGUUACGACG Aac a cgg 
c      c   c    AU   -  C           -   u g    

>tni-mir-107 (-36.20)   [tni-miR-107:51-73]

-----     c   u    --   u  u           c   - g    
     ucugu ugc guga  gcu cu uacaguguugc uug u gca 
     ||||| ||| ||||  ||| || ||||||||||| ||| | || u
     agaca acg cACU  CGG GA AUGUUACGACG Aac a cgg 
cgucg     c   c    AU   -  C           -   u g    

>fru-mir-22b (-37.40)   [fru-miR-22b:55-76]

     cu     uc        -     u       -----u   c 
guugc  cacag  guucuuca cuggc agcuuua      guc u
|||||  |||||  |||||||| ||||| |||||||      |||  
caaug  guguU  CGAGAAGU GACCG UCGAAau      cag c
     -u     GU        U     -       cguacc   u 

>tni-mir-22b (-37.70)   [tni-miR-22b:56-77]

     cu     uc        -     u       -   ccuc 
guugc  cacag  guucuuca cuggc agcuuua ugu    c
|||||  |||||  |||||||| ||||| ||||||| |||    g
caaug  guguU  CGAGAAGU GACCG UCGAAau gca    a
     -u     GU        U     -       c   cccc 

>fru-mir-212 (-33.51)   [fru-miR-212:62-82]

g     c  a   -aca  u     c       c      cuaaaacc 
 gucag gc uca    cc uggcu uagacug uuacug        g
 ||||| || |||    || ||||| ||||||| ||||||        c
 caguc cg agu    GG ACUGA AUCUGAC AAUgac        u
-     -  c   caUC  U     C       -      augaauac 

>tni-mir-212 (-33.30)   [tni-miR-212:62-82]

g     c  a   -aca  u     c       c      c  --a  cc 
 gucag gc uca    cc uggcu uagacug uuacug ua   ca  g
 ||||| || |||    || ||||| ||||||| |||||| ||   ||   
 cgguc cg agu    GG ACUGA AUCUGAC AAUgac au   gu  c
-     -  c   caUC  U     C       -      -  gaa  cu 

>dre-mir-212 (-31.70)   [dre-miR-212:61-81]

     u  a   a  -  u     c       c      c  aa gug 
gucag gc uca ua cc uggcu uagacug uuacug ua  u   u
||||| || ||| || || ||||| ||||||| |||||| ||  |    
cgguc ug agu aU GG ACUGA AUCUGAC AAUgac au  a   c
     -  c   c  C  U     C       -      -  ga agu 

>tni-mir-181a-2 (-31.20)   [tni-miR-181a:23-45]

caguuuuuucaggu   ug   A           UG      A    gg gac 
              cuu  ggg ACAUUCAACGC  UCGGUG GUuu  u   u
              |||  ||| |||||||||||  |||||| ||||  |    
              gga  ucc ugugaguugcg  agcuac caaa  a   c
--------------   uu   a           --      -    aa aga 

>dre-mir-181a-2 (-24.10)   [dre-miR-181a:7-29]

------uuggugA   U      CU       A    --    c 
             ACA UCAACG  GUCGGUG GUuu  ugcg u
             ||| ||||||  ||||||| ||||  ||||  
             ugu aguugc  cagcuac caaa  augu u
ggugggaguccca   c      --       -    ca    c 

>fru-mir-135a (-32.10)   [fru-miR-135a:11-32]

ug     uu U        CUAU           uuucu 
  cugug  u AUGGCUUU    UCCUAUGUGau     c
  |||||  | ||||||||    |||||||||||      
  gacau  g uaccgaaa    gggauacacug     u
ga     gg u        -ucu           uacga 

>tni-mir-135a (-32.10)   [tni-miR-135a:11-32]

ug     uu U        CUAU           uuucu 
  cugug  u AUGGCUUU    UCCUAUGUGau     c
  |||||  | ||||||||    |||||||||||      
  gacau  g uaccgaaa    gggauacacug     u
ga     gg u        -ucu           uacga 

>fru-mir-218a-2 (-37.70)   [fru-miR-218a:11-32]

g        uUU         CU        Gg ug cgggu 
 guuguucc   GUGCUUGAU  AACCAUGU  c  c     u
 ||||||||   |||||||||  ||||||||  |  |      
 cggcaagg   cacgaacug  uugguaca  g  g     c
-        uac         uc        -a gu auauu 

>tni-mir-218a-2 (-39.70)   [tni-miR-218a:11-32]

g        uUU         CU        Ggcug   g uu 
 guuguucc   GUGCUUGAU  AACCAUGU     cca g  c
 ||||||||   |||||||||  ||||||||     ||| |  u
 cggcaagg   cacgaacug  uugguaca     ggu c  u
-        uac         uc        ----a   g ua 

>fru-mir-29a-1 (-25.30)   [fru-miR-29a:45-66]

-aggu           uuu       -----        
     ugacugauuuc   ugguguu     cagaguc 
     |||||||||||   |||||||     |||||| c
     AUUGGCUAAAG   ACCACGA     gucuuaa 
gugac           UUU       Ucuuu        

>tni-mir-29a-1 (-27.50)   [tni-miR-29a:45-66]

--aggu           uuu       -----        
      ugaccgauuuc   ugguguu     cagaguc 
      |||||||||||   |||||||     |||||| c
      AUUGGCUAAAG   ACCACGA     gucuuaa 
agugac           UUU       Ucuuu        

>dre-mir-29a-2 (-28.20)   [dre-miR-29a:45-66]

-aggu           uuu       c    u  u 
     ugaccgauuuc   ugguguu agag cu u
     |||||||||||   ||||||| |||| || u
     AUUGGCUAAAG   ACCACGA Ucuu gg g
guaac           UUU       -    u  g 

>fru-mir-29b-2 (-28.42)   [fru-miR-29b:45-66]

-----u   a                 g  u   guauu 
      gga gcugguuucagguggug cu aga     g
      ||| ||||||||||||||||| || |||     u
      cuU UGACUAAAGUUUACCAC GA Ucu     c
gggguu   G                 -  -   aucua 

>tni-mir-29b-2 (-32.52)   [tni-miR-29b:49-70]

-   uu   a                 g  u   guauu 
 cuc  gga gcugguuucagguggug cu aga     g
 |||  ||| ||||||||||||||||| || |||     u
 ggg  cuU UGACUAAAGUUUACCAC GA Ucu     c
g   uu   G                 -  -   aucua 

>fru-mir-133 (-34.30)   [fru-miR-133:52-73]

--a     uuu    a       aa  u  a        accug 
   aaugc   gcua agcuggu  aa gg accaaauc     u
   |||||   |||| |||||||  || || ||||||||      
   uuacg   cgau UCGACCA  UU CC UGGUUUag     u
uag     cgu    G       AC  C  C        guaag 

>tni-mir-133 (-28.80)   [tni-miR-133:60-81]

ugacuccacaaugcuuu    a       aa  u  a        accuc 
                 gcua agcuggu  aa gg accaaauc     u
                 |||| |||||||  || || ||||||||      
                 cgau UCGACCA  UU CC UGGUUUag     u
---------------au    G       AC  C  C        guaag 

>fru-mir-132 (-44.80)   [fru-miR-132:54-75]

-      a    u        au           ug ---a  a 
 gucucc uggu accguggc  uagauuguuac  u    gc a
 |||||| |||| ||||||||  |||||||||||  |    ||  
 cggggg aucG UGGUACCG  AUCUGACAAUg  g    cg c
a      -    C        AC           gu acca  u 

>tni-mir-132 (-47.70)   [tni-miR-132:54-75]

-      a    u        au              ---a  a 
 gucucc uggu accguggc  uagauuguuacugu    gc a
 |||||| |||| ||||||||  ||||||||||||||    ||  
 cggggg aucG UGGUACCG  AUCUGACAAUggcg    cg c
a      -    C        AC              acca  u 

>fru-mir-125b (-29.90)   [fru-miR-125b:8-29]

cucuca     U    C           -    ug   
      uUCCC GAGA CCUAACUUGUG Acgu  ug 
      ||||| |||| ||||||||||| ||||  | c
      gaggg uucu ggguugggcac ugua  gu 
---guc     -    u           g    gu   

>tni-mir-125b (-43.80)   [tni-miR-125b:14-35]

--------- ua      u  -     U    C           -    ug   
         g  ccucuc ca uUCCC GAGA CCUAACUUGUG Acgu  ug 
         |  |||||| || ||||| |||| ||||||||||| ||||  | c
         c  ggggag gu gaggg uucu ggguugggcac ugua  gu 
cuacacacu gc      c  c     -    u           g    gu   

>fru-mir-29a-2 (-45.90)   [fru-miR-29a:84-105]

gaagacagucuuggacucccuucccc   -c     caaaag            uuc       g    uc   u 
                          guc  uccac      augacugauuuc   uggugcu agag  ggc g
                          |||  |||||      ||||||||||||   ||||||| ||||  |||  
                          uag  gggug      uAUUGGCUAAAG   ACCACGA Ucuu  ccg c
----------------------uaca   cu     acaaaa            UUU       -    --   a 

>tni-mir-29a-2 (-35.90)   [tni-miR-29a:60-81]

-uguuuc     caaaag            cuc       --u  a  c c 
       uccac      augacugauuuc   uggugcu   ag gc g c
       |||||      ||||||||||||   |||||||   || || |  
       aggug      uAUUGGCUAAAG   ACCACGA   uc cg c u
cgugacu     ucaaaa            UUU       Ucu  -  a g 

>fru-mir-29b-1 (-28.20)   [fru-miR-29b:50-71]

u   -   -          u      gu       u ucu 
 cca gaa gcugguuuca guggug  uuagaug g   u
 ||| ||| |||||||||| ||||||  ||||||| |    
 ggu cuU UGACUAAAGU UACCAC  GAUcugu c   c
-   u   G          U      --       u ucc 

>tni-mir-29b-1 (-35.20)   [tni-miR-29b:50-71]

     -   -          c      gu       -  uc 
cucca gaa gcugguuuca guggug  uuagaug ug  u
||||| ||| |||||||||| ||||||  ||||||| ||   
ggggu cuU UGACUAAAGU UACCAC  GAUcugc ac  c
     u   G          U      --       u  uc 

>fru-let-7a-1 (-29.40)   [fru-let-7a:6-27]

c   uU   G   U             ---gaga   a 
 agg  GAG UAG AGGUUGUAUAGUU       gug c
 |||  ||| ||| |||||||||||||       |||  
 ucc  uuc auc uccgacaugucag       cac a
-   cu   g   c             uagagga   c 

>tni-let-7a-1 (-32.40)   [tni-let-7a:6-27]

c    U   G   U              ---aga   a 
 aggg GAG UAG AGGUUGUAUAGUUg      gug c
 |||| ||| ||| ||||||||||||||      |||  
 uccc uuc auc uccgacaugucaau      cac a
-    u   g   c              agagga   c 

>fru-mir-100 (-25.80)   [fru-miR-100:5-26]

    A   CG     C   A      g  ac 
caca ACC  UAGAU CGA CUUGUG ug  u
|||| |||  ||||| ||| |||||| ||   
gugu ugg  aucua gcu gaacac gc  g
    a   au     u   c      -  cg 

>tni-mir-100 (-25.80)   [tni-miR-100:5-26]

    A   CG     C   A      g  ac 
caca ACC  UAGAU CGA CUUGUG ug  u
|||| |||  ||||| ||| |||||| ||   
gugu ugg  aucua gcu gaacac gc  g
    a   au     u   c      -  cg 

>fru-mir-219-1 (-21.39)   [fru-miR-219:1-22]

---------U   U     AA           u aaaauuc 
          GAU GUCCA  CGCAAUUCUUg g       a
          ||| |||||  ||||||||||| |        
          cua caggu  guguuaagagc c       a
aggucguugu   -     cc           - cauccua 

>tni-mir-219-1 (-40.09)   [tni-miR-219:17-38]

ucu    -a        U   U     AA           u aaaaucc 
   gagc  cuagcagc GAU GUCCA  CGCAAUUCUUg g       a
   ||||  |||||||| ||| |||||  ||||||||||| |        
   cucg  ggucguug cua caggu  guguuaagagc c       a
--c    ca        u   -     cc           - cauccga 

>fru-mir-24-1 (-33.90)   [fru-miR-189:16-38] [fru-miR-24:54-75]

ggguugugccc      G   A         UA     --g  a 
           uccuGU CCU CUGAACUGG  UCAGU   uc u
           |||||| ||| |||||||||  |||||   || a
           agGACA GGA GACUUGACU  GGUca   gg c
---------ug      A   C         -C     aaa  u 

>tni-mir-24-1 (-31.10)   [tni-miR-24:44-65]

-c       g   a         uaug    u  a 
  uuccugu ccu cugagcuga    cagu gu c
  ||||||| ||| |||||||||    |||| || a
  gagGACA GGA GACUUGACU    GUca ca g
cu       A   C         --CG    c  a 

>fru-mir-23a-1 (-39.01)   [fru-miR-23a:56-77]

g      c    a  --          cc       gaugcaca 
 cugugg gggg gg  guuccuggca  gugauuu        a
 |||||| |||| ||  ||||||||||  |||||||        a
 gacacu uccc CC  UAGGGACCGU  CACUAaa        g
-      u    A  UU          UA       aacaaaca 

>tni-mir-23a-1 (-39.01)   [tni-miR-23a:56-77]

g      c    a  --          cc       gaugcaca 
 cugugg gggg gg  guuccuggca  gugauuu        a
 |||||| |||| ||  ||||||||||  |||||||        a
 gacacu uccc CC  UAGGGACCGU  CACUAaa        g
-      u    A  UU          UA       aacaaaca 

>fru-mir-27e (-40.17)   [fru-miR-27e:60-81]

------cac ug  aa      c           auug       uugauccc 
         u  cu  aggcac gagcuuagcua    gugagca        u
         |  ||  |||||| |||||||||||    |||||||         
         a  gg  uccGUG CUUGAAUCGGU    CACUUgu        g
aguugauaa gu  ag      A           --GA       uguguauc 

>tni-mir-27e (-32.87)   [tni-miR-27e:60-81]

cucuugcugaa     a           auug       uugauccc 
           ggcac gagcuuagcua    gugagca        u
           ||||| |||||||||||    |||||||         
           ccGUG CUUGAAUCGGU    CACUUgu        g
-----------     A           --GA       uguguauc 

>fru-mir-375 (-26.20)   [fru-miR-375:49-70]

ugu      uuc    u     uc   c    uac  gaa 
   acuugc   acgu gagcc  acg acaa   cu   g
   ||||||   |||| |||||  ||| ||||   ||    
   uggacg   UGCG CUCGG  UGC UGUU   ga   a
---      uAU    -     CU   U    -Uu  agu 

>tni-mir-375 (-26.20)   [tni-miR-375:49-70]

ugu      uuc    u     uc   c    uac  gaa 
   acuugc   acgu gagcc  acg acaa   cu   g
   ||||||   |||| |||||  ||| ||||   ||    
   uggacg   UGCG CUCGG  UGC UGUU   ga   a
---      uAU    -     CU   U    -Uu  agu 

>fru-mir-128-1 (-39.60)   [fru-miR-128:51-72]

---   a c     uac        ga      uu    g  cu 
   gag g cuggg   ggggccgg  cgcugu  gaga uc  c
   ||| | |||||   ||||||||  ||||||  |||| ||   
   cuc c gaccU   CUCUGGCC  GUGACA  CUcu ag  u
uca   c c     UUU        AA      --    a  ua 

>tni-mir-128-1 (-38.20)   [tni-miR-128:46-67]

      uac        ga      uu    g  ca 
gcugca   ggggccgg  cgcugu  gaga uc  c
||||||   ||||||||  ||||||  |||| ||   
cgacgU   CUCUGGCC  GUGACA  CUcu ag  u
      UUU        AA      --    a  ua 

>fru-mir-1 (-24.90)   [fru-miR-1:49-70]

  u  u                  ac     u gacau 
cu ag guacauacuucuuuaugu  ccaua g     a
|| || ||||||||||||||||||  ||||| |      
gg uc UAUGUAUGAAGAAAUGUA  GGUau c     u
  u  u                  -A     - aauag 

>tni-mir-1 (-36.40)   [tni-miR-1:57-78]

a       -  u  u                  a  --------     g 
 uuaccuc cu ag guacauacuucuuuaugu cc        cauau a
 ||||||| || || |||||||||||||||||| ||        |||||  
 aguggag gg uc UAUGUAUGAAGAAAUGUA GG        guaua a
-       u  u  u                  A  Uaucaaua     c 

>fru-mir-202 (-25.60)   [fru-miR-202:43-64]

-   u           -a   a       c   ug 
 ucc uuuuccuaugc  uau ccuuuuu aga  u
 ||| |||||||||||  ||| ||||||| |||   
 ggg AAAAGGGUACG  AUA GGAGAaa uuu  a
g   u           GG   C       -   ca 

>tni-mir-202 (-25.60)   [tni-miR-202:43-64]

-   u           -a   a       c   ug 
 ucc uuuuccuaugc  uau ccuuuuu aga  u
 ||| |||||||||||  ||| ||||||| |||   
 ggg AAAAGGGUACG  AUA GGAGAaa uuu  a
g   u           GG   C       -   ca 

>fru-mir-203 (-28.20)   [fru-miR-203:46-67]

--   a            c    g    -acag   u 
  cug uuaagugguucu aaca uuca     uuc a
  ||| |||||||||||| |||| ||||     ||| u
  gac aGUUCACCAGGA UUGU AAGU     aag g
cu   c            U    A    Guuaa   a 

>tni-mir-203 (-28.20)   [tni-miR-203:46-67]

--   a            c    g    -acag   u 
  cug uuaagugguucu aaca uuca     uuc u
  ||| |||||||||||| |||| ||||     ||| u
  gac aGUUCACCAGGA UUGU AAGU     aag g
cu   c            U    A    Guuaa   a 

>fru-mir-23a-3 (-38.90)   [fru-miR-23a:53-74]

ucuguu     -g  gg           a       uuaga u 
      ggcca  gg  auuccuggcag gugauuu     c a
      |||||  ||  ||||||||||| |||||||     |  
      ucggu  CC  UAGGGACCGUU CACUAag     g c
------     aA  UU           A       -ucag a 

>tni-mir-23a-3 (-38.60)   [tni-miR-23a:54-75]

ucuguu     -g               a       ----   ag 
      ggcca  gggaauuccuggcag gugauuu    uug  a
      |||||  ||||||||||||||| |||||||    |||   
      ucggu  CCUUUAGGGACCGUU CACUAag    gac  c
------     aA               A       ucag   au 

>fru-mir-27c (-45.00)   [fru-miR-27c:54-74]

ggcugugu                 c  a        g  a  g 
        ggcggcaggacuuaacc ac ugugagca ug gu u
        ||||||||||||||||| || |||||||| || ||  
        ccgcCGUCUUGAAUUGG UG ACACUUgu ac cg g
--------                 -  -        -  -  u 

>tni-mir-27c (-43.90)   [tni-miR-27c:52-72]

ggcugugc                 c  a        g  a u 
        ggcggcaggacuuaacc ac ugugaaca ug g g
        ||||||||||||||||| || |||||||| || |  
        ccgcCGUCUUGAAUUGG UG ACACUUgu gc c u
--------                 -  -        -  - g 

>fru-mir-24-2 (-46.00)   [fru-miR-24:51-72]

g gu           g       u     uaa     gugu 
 g  cagucuccugu ccugcug gcuga   ucagu    g
 |  ||||||||||| ||||||| |||||   |||||    a
 c  gucagggGACA GGACGAC UGACU   GGUcg    c
- ug           A       U     --C     guug 

>tni-mir-24-2 (-43.30)   [tni-miR-24:51-72]

gggu           g       u     uaa     gugu 
    cagucuccugu ccugcug gcuga   ucagu    g
    ||||||||||| ||||||| |||||   |||||    a
    gucagggGACA GGACGAC UGACU   GGUcg    c
---g           A       U     --C     guug 

>fru-mir-138 (-35.65)   [fru-miR-138:6-27]

---  ug AG             UCA     augacagaca 
   gc  c  CUGGUGUUGUGAA   GGCCg          c
   ||  |  |||||||||||||   |||||           
   cg  g  gaccacaacacuu   ucggc          c
cca  gu -g             -ua     cgaauauccu 

>tni-mir-138 (-35.65)   [tni-miR-138:6-27]

---  ug AG             UCA     augacagaca 
   gc  c  CUGGUGUUGUGAA   GGCCg          c
   ||  |  |||||||||||||   |||||           
   cg  g  gaccacaacacuu   ucggc          c
cca  gu -g             -ua     cgaagauccu 

>fru-mir-129-2 (-29.70)   [fru-miR-129:6-27]

u    -       C   CU      G   uuc   ag 
 gggu CUUUUUG GGU  GGGCUU CUg   cua  g
 |||| ||||||| |||  |||||| |||   |||   
 ucua gaaaaac cca  cccgaa gac   gau  c
g    u       c   uu      g   --c   ga 

>tni-mir-129-2 (-28.80)   [tni-miR-129:5-26]

    -       C   CU      G   uuc   ag 
gggu CUUUUUG GGU  GGGCUU CUg   cua  g
|||| ||||||| |||  |||||| |||   |||   
ucua gaaaaac cca  cccgaa gac   gau  c
    u       c   uu      g   --c   ga 

>fru-mir-125a (-26.00)   [fru-miR-125a:9-30]

cuucagug    U   AC     A        gaua 
        UCCC GAG  CCUUA CCUGUGau    u
        |||| |||  ||||| ||||||||     
        aggg uuc  ggagu ggacacug    g
------ca    -   cu     -        gaaa 

>tni-mir-125a (-26.30)   [tni-miR-125a:6-27]

cagug    U   AC     A        aacg 
     UCCC GAG  CCUUA CCUGUGau    u
     |||| |||  ||||| ||||||||     
     aggg uuc  ggagu ggacacug    g
---ca    -   cu     -        gaaa 

>fru-mir-17-2 (-33.40)   [fru-miR-17:14-35]

g   a        -C         A  G     G   uu  a 
 uca aguagugu  AAAGUGCUU CA UGCAG UAg  ug u
 ||| ||||||||  ||||||||| || ||||| |||  ||  
 agu uuaucgcg  uuucacgga gu acguc auc  ac g
-   c        ac         a  g     -   -u  a 

>tni-mir-17-2 (-31.70)   [tni-miR-17:14-35]

g   cc       -C         A  G     G   uuaa 
 uca  guagugu  AAAGUGCUU CA UGCAG UAg    a
 |||  |||||||  ||||||||| || ||||| |||    a
 agu  uaucacg  uuucacgga gu acguc auc    g
-   cu       ac         a  g     -   uaaa 

>fru-mir-20 (-32.50)   [fru-miR-20:9-31]

-------  c       -           G     G   uua u 
       ag aguauUA AAGUGCUUAUA UGCAG UAG   c g
       || ||||||| ||||||||||| ||||| |||   |  
       uc ucaugau uucacgagugu acguc auc   g a
acguaga  u       c           g     -   -ug u 

>tni-mir-20 (-31.20)   [tni-miR-20:8-30]

- c       -           G     G   uuu  u 
 g aguauUA AAGUGCUUAUA UGCAG UAG   uc c
 | ||||||| ||||||||||| ||||| |||   ||  
 c ucaugau uucacgaguau acguc auc   gg a
u u       c           g     -   --u  g 

>fru-mir-92-1 (-46.60)   [fru-miR-92:49-70]

       g            g    a        -  ga 
cuuuccu ugcagguuggga aggu gcaaugcu ca  g
||||||| |||||||||||| |||| |||||||| ||  a
ggaagga gUGUCCGGCCCU UUCA CGUUAUgg gu  u
       g            G    -        c  au 

>tni-mir-92-1 (-38.30)   [tni-miR-92:49-70]

cuuuc  g            g    a       u  g g 
     cu uacagguuggga aggu gcaaugc cg a u
     || |||||||||||| |||| ||||||| || | u
     ga gUGUCCGGCCCU UUCA CGUUAUg gu u c
-----  g            G    -       -  g a 

>fru-mir-15b (-33.90)   [fru-miR-15b:20-41]

ugaguc       cug   U       C  C          -a gaug 
      ccuuaga   cua AGCAGCG AU AUGGUUUGUA  c    u
      |||||||   ||| ||||||| || ||||||||||  |    a
      ggaauuu   gau ucgucgu ua uaccgaacgu  g    g
---aaa       uaa   u       c  a          gg aaaa 

>tni-mir-15b (-33.60)   [tni-miR-15b:16-37]

gc       cug  uU       C  C          augaug g 
  ccuuaga   cu  AGCAGCG AU AUGGUUUGUA      u g
  |||||||   ||  ||||||| || ||||||||||      |  
  ggaauuu   ga  ucgucgu ua uaccaaacgu      a a
aa       uaa  uu       u  a          -ggaaa a 

>fru-mir-10c (-30.11)   [fru-miR-10c:15-36]

----------cu    u      -  A    G    UC          uaaaaauc 
            gucu cuauau cU CCCU UAGA  CGGAUUUGUg        a
            |||| |||||| || |||| ||||  ||||||||||        u
            uagg gauaua ga gggg aucu  gcuuaaacac        u
gcagcacauauu    u      u  -    -    uc          uaacgaaa 

>tni-mir-10c (-30.11)   [tni-miR-10c:21-42]

----gagccgcu    u      -  A    G    UC          uaacgauc 
            gucu cuauau cU CCCU UAGA  CGGAUUUGUg        a
            |||| |||||| || |||| ||||  ||||||||||        u
            uagg gauaua ga gggg aucu  gcuuaaacac        u
gcagcacauauu    u      u  -    -    uc          uaacgaaa 

>fru-mir-9-3 (-33.90)   [fru-miR-9:16-38]

ggagcugu       UC               G     ---      
        guuucug  UUUGGUUAUCUAGCU UAUGA   guguu 
        |||||||  ||||||||||||||| |||||   |||| a
        uaaagau  aagccaauagaucga auacu   cauaa 
--------       ga               a     guc      

>tni-mir-9-3 (-33.90)   [tni-miR-9:16-38]

ggagcugu       UC               G     ---      
        guuucug  UUUGGUUAUCUAGCU UAUGA   guguu 
        |||||||  ||||||||||||||| |||||   |||| a
        uaaagau  aagccaauagaucga auacu   cauaa 
--------       ga               a     guc      

>fru-mir-183 (-27.40)   [fru-miR-183:6-28]

    g      --AC     GA       ----    g 
cugu UAUGGC    UGGUA  AUUCACU    Guga a
|||| ||||||    |||||  |||||||    ||||  
gaca auaccg    accau  uaaguga    cacu g
    a      ggau     --       cuau    c 

>tni-mir-183 (-27.40)   [tni-miR-183:6-28]

    g      --AC     GA       ----    g 
cugu UAUGGC    UGGUA  AUUCACU    Guga a
|||| ||||||    |||||  |||||||    ||||  
gaca auaccg    accau  uaaguga    cacu g
    a      ggau     --       cuau    c 

>fru-mir-96 (-39.60)   [fru-miR-96:16-38]

---------c   -     g  c  U         G     UU      -cu   u 
          ucu ucuuc cc au UUGGCACUA CACAU  UUGCUu   gua g
          ||| ||||| || || ||||||||| |||||  ||||||   |||  
          aga agaag gg ua aaccgugau gugua  aacgag   cau u
uccaacuuuc   c     a  a  u         -     uu      uuu   a 

>tni-mir-96 (-31.30)   [tni-miR-96:9-31]

uug  c  U         G     UU      -cu   u 
   cc au UUGGCACUA CACAU  UUGCUu   gua a
   || || ||||||||| |||||  ||||||   |||  
   gg ua aaccgugau gugua  aacgag   cau u
aga  a  u         -     uu      uuu   a 

>fru-mir-182 (-21.04)   [fru-miR-182:47-67]

-----ugu       u -g      uca      ugaggu 
        uuggcaa g  uagaac   cacugg      a
        ||||||| |  ||||||   ||||||       
        AACCGUU C  AUCUUG   GUggcc      g
ucgucAUC       - AG      ---      uaggua 

>tni-mir-182 (-21.04)   [tni-miR-182:47-67]

ugu       u -g      uca      ugaggu 
   uuggcaa g  uagaac   cacugg      a
   ||||||| |  ||||||   ||||||       
   AACCGUU C  AUCUUG   GUggcc      g
AUC       - AG      ---      uaggua 

>fru-mir-210 (-37.30)   [fru-miR-210:55-76]

----------       g     g    a   acua       u  -c  cag 
          ucuaaaa caggu agcc cug    acgcaca ug  gc   u
          ||||||| ||||| |||| |||    ||||||| ||  ||   u
          ggguuuu guccA UCGG GAC    UGCGUGU ac  ug   g
gucuucgcaa       g     A    C   AGUG       C  cu  aca 

>tni-mir-210 (-30.20)   [tni-miR-210:47-68]

----------     g    a   acua       u  -u  cag 
          caggu agcc cug    acgcaca ug  gc   u
          ||||| |||| |||    ||||||| ||  ||   u
          guccA UCGG GAC    UGCGUGU ac  ug   g
agggguuuug     A    C   AGUG       C  cu  aca 

>fru-let-7g (-33.50)   [fru-let-7g:6-27]

u    U   GU     U          ----uua     ac 
 ggga GAG  AGUAG UUGUAUAGUU       ggauc  a
 |||| |||  ||||| ||||||||||       |||||   
 cccu uuc  ucauc gacauaucaa       ucuag  c
a    -   ug     u          uagaggg     ac 

>tni-let-7g (-33.50)   [tni-let-7g:6-27]

u    U   GU     U          ----uua     ac 
 ggga GAG  AGUAG UUGUAUAGUU       ggauc  a
 |||| |||  ||||| ||||||||||       |||||   
 cccu uuc  ucauc gacauaucaa       ucuag  c
a    -   ug     u          uagaggg     ac 

>fru-mir-22a (-50.40)   [fru-miR-22a:55-76]

       u              -      a      --   ccu 
gccgacc acagcaguucuuca cuggca gcuuua  ugu   c
||||||| |||||||||||||| |||||| ||||||  |||   g
cgguugg uguUGUCAAGAAGU GACCGU CGAAau  aca   u
       -              C      -      cg   acg 

>tni-mir-22a (-52.40)   [tni-miR-22a:55-76]

       u              -      a      -----   cc 
gccgacc acagcaguucuuca cuggca gcuuua     ugu  u
||||||| |||||||||||||| |||||| ||||||     |||   
cggcugg uguUGUCAAGAAGU GACCGU CGAAau     acg  c
       -              C      -      cgcca   ug 

>fru-mir-204 (-40.60)   [fru-miR-204:15-36]

---------u     cug     U         CA    A     ggagc 
          gugac   ugggc UCCCUUUGU  UCCU UGCCU     u
          |||||   ||||| |||||||||  |||| |||||      
          cacug   acucg agggaaacg  aggg acgga     c
cuacagucac     ucg     u         ac    -     auagg 

>tni-mir-204a (-40.60)   [tni-miR-204a:15-36]

----------u     cug     U         CA    A     ggagc 
           gugac   ugggc UCCCUUUGU  UCCU UGCCU     u
           |||||   ||||| |||||||||  |||| |||||      
           cacug   acucg agggaaacg  aggg acgga     c
acuucagucac     ccg     u         ac    -     auagg 

>fru-mir-152 (-21.74)   [fru-miR-152:45-66]

----   u         gauacacu      -  gaau 
    ggc aaguucugu        cugacu gu    g
    ||| |||||||||        |||||| ||     
    cUG UUCAAGACA        GACUga cg    u
ggcc   U         --AUACGU      u  uauc 

>tni-mir-152 (-26.74)   [tni-miR-152:59-80]

cugcucaaacu     - u         gauacacu      -  gaau 
           cuggg c aaguucugu        cugacu gu    g
           ||||| | |||||||||        |||||| ||     
           ggccc G UUCAAGACA        GACUga cg    g
-----------     U U         --AUACGU      u  uauc 

>fru-mir-15a (-32.10)   [fru-miR-15a:13-34]

cuggugaugcu UA         A          gg  a 
           g  GCAGCACGG AUGGUUUGUG  uu c
           |  ||||||||| ||||||||||  || a
           c  cgucguguc uaccggacau  ag c
----------a gc         a          ag  u 

>tni-mir-15a (-31.20)   [tni-miR-15a:13-34]

cuggugaugcu UA         A          ag  a 
           g  GCAGCACGG AUGGUUUGUG  uu c
           |  ||||||||| ||||||||||  || a
           c  cgucguguc uaccgaacau  ag c
----------a gc         g          ag  u 

>fru-mir-16 (-40.00)   [fru-miR-16:13-34]

gc  -  g    g          -UA          u  ag  u 
  ca cu ugcu UAGCAGCACG   AAUAUUGGAG ua  gc c
  || || |||| ||||||||||   |||||||||| ||  || u
  gu ga acga gucgucgugc   uuaugaccuc au  ug c
ca  a  a    a          uag          c  ag  u 

>tni-mir-16 (-32.10)   [tni-miR-16:1-22]

--------          -UA          u  ag  u 
        UAGCAGCACG   AAUAUUGGAG ua  gc c
        ||||||||||   |||||||||| ||  || u
        gucgucgugc   uuaugaccuc au  ug c
gaaacgaa          uag          c  ag  u 

>fru-mir-190 (-22.00)   [fru-miR-190:6-27]

    -cU                UA     uuau 
cugu   GAUAUGUUUGAUAUAU  GGUug    u
||||   ||||||||||||||||  |||||     
gaca   uuauacaaacuauaua  ucaac    c
    ucc                --     cuga 

>tni-mir-190 (-22.00)   [tni-miR-190:6-27]

    -cU                UA     uuau 
cugu   GAUAUGUUUGAUAUAU  GGUug    u
||||   ||||||||||||||||  |||||     
gaca   uuauacaaacuauaua  ucaac    c
    ucc                --     cuga 

>fru-mir-181a-2 (-39.70)   [fru-miR-181a:22-44]

gacuuug      cu ug   A          CU       A     guc 
       ucaagu  u  ggg ACAUUCAACG  GUCGGUG GUuuu   u
       ||||||  |  ||| ||||||||||  ||||||| |||||    
       aguuca  a  ccc ugugaguugu  cagcuac caaaa   c
-cccucg      -c gu   a          --       -     agc 

>mmu-mir-489 (-37.40)   [mmu-miR-489:60-82]

----ac  c g  -       c                  a  a  cu    aaag 
      ug u ca guggcag uugguugucauaugugug ug ca  uucu    u
      || | || ||||||| |||||||||||||||||| || ||  ||||     
      ac a gu cauuguc aauCGACGGUAUAUACAC AC GU  AAga    c
ugaaca  a g  a       a                  C  A  --    ccuu 

>rno-mir-489 (-39.90)   [rno-miR-489:60-82]

----acugcuaca       c              c      aca      c ug 
             guggcag uugguugucguaug gugaug   cguucu g  u
             ||||||| |||||||||||||| ||||||   |||||| |   
             cauuguc aauCGACGGUAUAU CACUAC   GUAAga c  a
ugaacaacaagga       a              A      --A      c uu 

>rno-mir-383 (-28.90)   [rno-miR-383:6-27]

----uccucA      AA    A        uug   gga 
          GAUCAG  GGUG CUGUGGCU   ggu   u
          ||||||  |||| ||||||||   |||    
          cugguc  ucac gacaccga   cua   a
acgagaaaga      cg    -        ---   auu 

>rno-mir-207 (-39.60)   [rno-miR-207:51-73]

-   c     u ag    ug           -    g ag 
 agg agggg g  gggc  cgggaggagcg gggc g  g
 ||| ||||| |  ||||  ||||||||||| |||| |   
 uuc UUCCC C  CUCG  GUCCUCUUCGc uucg c  c
u   u     U CU    --           g    g gu 

>rno-mir-501 (-35.50)   [rno-miR-501:14-35]

   cg  c       UC     U   U     AAAa   uau 
gcu  uc ucucuAA  CUUUG CCC GGGUG    ugc   u
|||  || |||||||  ||||| ||| |||||    |||   u
cga  gg agggguu  ggaac ggg cccac    acg   g
   au  a       ua     -   -     -gua   uau 

>rno-mir-361 (-29.10)   [rno-miR-361:6-27]

     UU         --U  A    U    a  a 
gaagc  AUCAGAAUC   CC GGGG ACuu uu u
|||||  |||||||||   || |||| |||| ||  
cuuug  uagucuuag   gg cccc ugaa ag u
     cu         ugu  a    c    a  u 

>rno-mir-215 (-31.40)   [rno-miR-215:14-34]

--------------  ug       c A  A     -  UU        a ug  g 
              gg  uacagga a UG CCUAU GA  UGACAGAC g  ug c
              ||  ||||||| | || ||||| ||  |||||||| |  ||  
              cu  augucuu u ac ggaug cu  acugucug u  gc u
aacauuccuccucu  gu       a a  c     u  -u        - gu  g 

>rno-mir-224 (-37.10)   [rno-miR-224:8-30]

       CA         U   U      A u   ug  uu 
gggcuuu  AGUCACUAG GGU CCGUUU g aga  gu  u
|||||||  ||||||||| ||| |||||| | |||  ||   
cccgaaa  ucagugauc ccg gguaaa c uuu  ua  u
       ca         -   u      a -   gu  cg 

>mmu-mir-483 (-33.90)   [mmu-miR-483:8-29] [mmu-miR-483*:45-65]

       -          AA   AA   A u   uuu 
gaggggg AAGACGGGAG  GAG  GGG G ggu   u
||||||| ||||||||||  |||  ||| | |||    
cucucuu UUCUGCCCUC  CUC  CUC C ccg   g
       g          CC   --   A U   ugg 

>rno-mir-483 (-33.90)   [rno-miR-483:45-67]

       -          aa   aa   a u   uuu 
gaggggg aagacgggag  gag  ggg g ggu   u
||||||| ||||||||||  |||  ||| | |||    
cucucuU UUCUGCCCUC  CUC  CUC C ccg   g
       G          CC   --   A U   ugg 

>rno-mir-370 (-43.10)   [rno-miR-370:48-70]

       g         ca gu   u    u   a  g 
agacaga agaccaggu  c  cuc gcag uac ca c
||||||| |||||||||  |  ||| |||| ||| || u
ucugucu uUUGGUCCA  G  GGG CGUC Gug gu c
       g         AG UG   U    C   a  a 

>rno-mir-377 (-29.00)   [rno-miR-377:46-67]

  ug g           c   -    a    - uuu 
cu  a cagagguugcc uug guga uucg c   a
||  | ||||||||||| ||| |||| |||| |   u
ga  u GUUUUCAACGG AAC CACU Aagu g   u
  gu G           A   A    -    u uag 

>rno-mir-412 (-26.30)   [rno-miR-412:44-66]

-gg     a    c      c   aa    -    u 
   gacgg uggu gaccag ugg  agua auug u
   ||||| |||| |||||| |||  |||| ||||  
   cUGCC AUCA CUGGUC ACU  UCAu uaau u
ugg     G    C      C   --    g    c 

>rno-mir-1 (-38.64)   [rno-miR-1*:13-34] [rno-miR-1:54-75]

             C                AC     ugaaca 
ugccuacucagaG ACAUACUUCUUUAUGU  CCaua      u
||||||||||||| ||||||||||||||||  |||||       
auggauggguuuU UGUGUGAAGAAAUGUA  GGUau      a
             A                -A     cguaag 

>rno-mir-133b (-40.30)   [rno-miR-133b:48-69]

-------       c        ca  c  a      u  g      
       cccugcu uggcuggu  aa gg accaag cc ucuuc 
       ||||||| ||||||||  || || |||||| || |||| c
       gggacga AUCGACCA  UU CC UGGUUU gg agagu 
aacgguc       c        AC  C  C      -  -      

>mmu-mir-484 (-24.70)   [mmu-miR-484:5-26]

cu    AG  U        UCCCGAUaaaccuca 
  cgUC  GC CAGUCCCC               a
  ||||  || ||||||||                
  gcgg  cg gucggggg               a
au    --  -        auccauucugggaua 

>mmu-mir-485 (-35.50)   [mmu-miR-485:9-30] [mmu-miR-485*:45-66]

   u         CU       -    A    auuc 
acu ggagAGAGG  GGCCGUG AUGA UUCg    a
||| |||||||||  ||||||| |||| ||||    u
uga cuuCUCUCC  UCGGCAC UACU GAgc    c
   u         UC       A    -    aaau 

>mmu-mir-486 (-80.10)   [mmu-miR-486:33-54]

ca  --cag     auc  g   u      g g                       guccuuca   u 
  gc     cucug   uc ccc cccuga g gUCCUGUACUGAGCUGCCCCGAG        cug g
  ||     |||||   || ||| |||||| | |||||||||||||||||||||||        |||  
  cg     ggggc   ag ggg gggacu c uaggacaugacucgacggggcuc        gac c
ac  aacaa     aac  a   u      g g                       --------   u 

>ppt-MIR390a (-66.00)   [ppt-miR390a:16-36]

--     u   a  a            G            -         uucu   u g   -c    u 
  cauga aca uu cgAAGCUCAGGA GGAUAGCGCCau ucucuguuc    cua c aca  uugg a
  ||||| ||| || |||||||||||| |||||||||||| |||||||||    ||| | |||  ||||  
  gugcu ugu aa guuucgagucuu ccuauugcggua agagacggg    gau g ugu  gacc a
uc     c   g  c            a            u         uauc   c -   uc    a 

>ppt-MIR390b (-75.80)   [ppt-miR390b:28-48]

-------------------aucaagcugcu   a      a  a            G        CC  -  -c    -         u  auc   ua 
                              ggg gauaca uu cgAAGCUCAGGA GGAUAGCG  ca gc  cugc uuuuacugu ca   agu  g
                              ||| |||||| || |||||||||||| ||||||||  || ||  |||| ||||||||| ||   |||   
                              ccc cugugu aa guuucgagucuu ccuaucgc  gu cg  gacg agaaugaua gu   ucg  a
uggucgauuggcuaggccaacggguuuaau   c      c  c            a        -a  a  ua    u         -  -cu   ug 

>ppt-MIR319a (-98.80)   [ppt-miR319a:148-167]

          g           u  ug    c a        g u  c c g   aau  c    c     u   -           
guggagcucc uuucgguccaa ag  gcug g cggaaggu g cc g u ccg   ca acgu cgggu gcu uaucggggca 
|||||||||| ||||||||||| ||  |||| | |||||||| | || | | |||   || |||| ||||| ||| ||||||||| g
caCCUCGAGG GAAGUCAGGUU uc  cggc c gccuucca c gg c a ggc   gu ugca gccua ugg auagccccgg 
          -           C  ug    - c        g u  u a g   ccu  u    a     -   c           

>ppt-MIR319b (-83.70)   [ppt-miR319b:140-159]

--                  u  ca      g c  a     uacc   g   ac   a    c   c              
  gagcucuuuucaguccag ag  gcuaau u ga gguug    gcu ccg  uca acuu cgg uuccauaucacga 
  |||||||||||||||||| ||  |||||| | || |||||    ||| |||  ||| |||| ||| |||||||||||| c
  CUCGAGGGAAGUCAGGUU uc  cgauug a cu cuagc    cga ggc  agu ugga gcc aagguauagugcg 
uC                  C  ua      g c  -     uagu   g   cu   c    a   u              

>ppt-MIR319c (-99.10)   [ppt-miR319c:154-174]

     u  cu   u                      u  u      ua     -    a u   g   ac   a  uuc   c      c  uu 
uaacc ca  ggc gugggagcuuccuucgguucaa ag ggcuga  ugagg uugc c gcu ccg  uca ac   cgg uucccu uc  a
||||| ||  ||| |||||||||||||||||||||| || ||||||  ||||| |||| | ||| |||  ||| ||   ||| |||||| ||  g
auugg gu  cug uaCCCUCGAGGGAAGUCAGGUU uc ucgacu  acuuc ggcg g cga ggc  agu ug   gcc aaggga gg  a
     u  uu   -                      C  u      ca     u    a u   g   gu   c  uaa   u      c  ua 

>ppt-MIR319d (-93.40)   [ppt-miR319d.1*:8-27] [ppt-miR319d.2*:29-49] [ppt-miR319d:145-165]

     u      UU           U  UG         A      U  u   g   ac   a  uuc   c    c  u   a 
cagcg gGAGCU  CUUCGGUCCAA Ag  GCUGAGUCG AGGUUG GC gcu ccg  uca ac   cgg uucc ua cca c
||||| ||||||  ||||||||||| ||  ||||||||| |||||| || ||| |||  ||| ||   ||| |||| || ||| c
gucgc CCUCGA  GAAGUCAGGUU uc  cgauucggc ucuaac ug cga ggc  agu ug   gcc aagg au ggu c
     C      GG           C  ua         c      u  u   g   au   c  uaa   u    u  -   c 

>ppt-MIR533a (-59.10)   [ppt-miR533a*:6-26] [ppt-miR533a:79-99]

           GC             ac     aga     cuu u    cc 
augggGAGCUG  CAGGCUGUGAGGG  ggagc   guugg   g ggcu  u
|||||||||||  |||||||||||||  |||||   |||||   | ||||   
ugcCUCUCGAC  GUCUGACACUCcu  cuucg   cgacc   c ccgg  u
           AC             -c     --a     ucc -    ug 

>ppt-MIR534a (-75.32)   [ppt-miR534a:175-196]

     c        ugu       g     --      u  ug    -a    aaaguauuaguugguugaugcacgauguuguuuugcaacaagugacu 
auaug augcaacu   guggaca acuga  cuaguc ag  gugu  gugg                                               c
||||| ||||||||   ||||||| |||||  |||||| ||  ||||  ||||                                               g
uauaC UACGUUGA   UACCUGU Ugacu  gaucag uc  uaca  cacc                                               u
     A        CGU       A     ua      c  gu    cc    gggguuaguuuuguugaagguuuugaacacccaagucauaacgucgc 

>ppt-MIR535a (-71.00)   [ppt-miR535a:27-47]

     u   acg        ---ccua          AG    A              uu    u  a 
ggagg gaa   guggagaa       ggUGACAACG  AGAG GCACGCuggaaugc  uuca gc a
||||| |||   ||||||||       ||||||||||  |||| ||||||||||||||  |||| || u
ucucc cuu   uaccucuu       ccgcuguugc  ucuc cgugcgaucuugug  aggu cg a
     u   cag        cuacaaa          ca    c              -u    u  c 

>ppt-MIR535b (-40.60)   [ppt-miR535b:2-22]

      A  A     A      u     gc    u   a 
gUGACA CG GAGAG GCACGC ggaau  acuc ugu a
|||||| || ||||| |||||| |||||  |||| ||| g
cgcugu gc cucuc cgugug ucuug  uggg acg a
      c  c     c      u     ua    u   a 

>ppt-MIR535c (-45.30)   [ppt-miR535c:2-22]

         A     A      u       u    c  a 
gUGACAACG GAGAG GCACGC ggaaugc uuca gc a
||||||||| ||||| |||||| ||||||| |||| || u
cgcuguugc cuuuc cgugcg ucuugug aggu cg a
         c     c      u       u    c  a 

>osa-MIR535 (-68.30)   [osa-miR535:6-26]

             A            c      -----    u a   u 
ggcggUGACAACG GAGAGAGCACGC ggugcg     gcgg c cgg g
||||||||||||| |||||||||||| ||||||     |||| | |||  
ccgucacuguugc cucuuucgugcg ccaugc     cgcc g gcc a
             c            u      ggcgg    c -   g 

>ppt-MIR156a (-65.00)   [ppt-miR156a:21-40]

    gu      u u  ga       -               gc  a   u    aug 
ggcg  ggagga g gg  gUGACAG AAGAGAGUGAGCACa  ug gca guac   a
||||  |||||| | ||  ||||||| |||||||||||||||  || ||| ||||    
ucgc  uuuccu c cc  cgcuguc uucucucacucgugu  ac cgu caug   g
    ag      - u  -a       c               gu  c   u    aag 

>ppt-MIR536a (-72.00)   [ppt-miR536a:163-184]

   uu      cuu  a   -   u         -        ua     aauuucau      uuuc    uuagucgau      -     ------  c     -u     
uga  ccaccc   gg ugu cac gcuuggcac aauccucu  uugug        guccuc    gugg         agaguu guacu      ac uuuau  cauc 
|||  ||||||   || ||| ||| ||||||||| ||||||||  |||||        ||||||    ||||         |||||| |||||      || |||||  ||| c
auu  gguggg   cC ACG GUG CGAACCGUG UUggggga  aacac        uagggg    cacu         ucucga cguga      ug aaaua  guga 
   uu      aau  A   U   U         C        -c     ------gu      --uu    ---------      u     ccuguu  u     uu     

>ppt-MIR537a (-80.60)   [ppt-miR537a:155-175]

       -      a   a              g   c ag     a  -au     u   gccauggaaacagauaagagcucaugucuggguu 
guugucg ucauau ugg cuguagaaacaccu aag g  ugagg cc   ccgau cua                                  c
||||||| |||||| ||| |||||||||||||| ||| |  ||||| ||   ||||| |||                                  c
cgauagu aguaua AUC GACAUCUUUGUGGA UUc c  acuuc gg   ggcua gau                                  u
       u      c   G              G   u aa     -  auu     c   agaguacgcguuuggaguuuucguagugucuuug 

>ppt-MIR537b (-65.84)   [ppt-miR537b:122-142]

      c   a              g   u ac       a  -       ----aggua  a     a      c 
ucauau ugg cuguagaaacaccu aag g  ugaaguu gu ccgguuu         ug gaaug uuggag a
|||||| ||| |||||||||||||| ||| |  ||||||| || |||||||         || ||||| |||||| c
aguaua AUC GACAUCUUUGUGGA UUc c  acuucga cg ggccaaa         ac cuugu gaccuc c
      c   G              G   u ga       a  u       guaauguag  -     a      u 

>ppt-MIR538a (-83.50)   [ppt-miR538a:38-59]

u     ug    ug  a  c      cu          U        U              uu     -------u     ccg    aa   u 
 uacaa  aguu  ug gu uccaug  gcucuaacaU GCAUGGAG CUAUGUCUGGAgua  guccu        cauuc   ugca  ugc g
 |||||  ||||  || || ||||||  |||||||||| |||||||| ||||||||||||||  |||||        |||||   ||||  |||  
 auguu  ucaa  gc ca aggugu  ugagauugua cguacuuc gaugcagaccuuau  caggg        guaag   acgu  aug a
a     ca    gu  c  a      ag          -        c              --     uuacaagu     --a    -a   a 

>ppt-MIR538b (-50.20)   [ppt-miR538b:17-38]

    g  u     a   U        U           c   ------   -   uug    u 
ccau cu cucua cgU GCAUGGAG CUAUGUCUGGA cuc      cuc cau   cucu u
|||| || ||||| ||| |||||||| ||||||||||| |||      ||| |||   ||||  
ggua ga gagau gua cguacuuc gauacaggcuu gag      gag gua   gaga c
    a  u     c   -        c           a   cuuuaa   u   --a    a 

>ppt-MIR538c (-73.90)   [ppt-miR538c:38-59]

u     ag     u  a         cuu     a   U        U           -     ---u -   uuc    u 
 uacaa  aguuc ug gucuccaug   cucug cgU GCAUGGAG CUAUGUCUGGA ccuuc    c cau   cucu u
 |||||  ||||| || |||||||||   ||||| ||| |||||||| ||||||||||| |||||    | |||   ||||  
 auguu  ucaag gc cggagguac   gagau gua cguacuuc gauacaggcuu ggaag    g gug   gaga c
a     ca     u  c         uau     c   -        c           a     uuac a   uaa    a 

>hsa-mir-455 (-41.60)   [hsa-miR-455-5p:16-37] [hsa-miR-455-3p:54-74]

----ucccu   -g     -----          U      A   C   gaa 
         ggc  ugagg     gUAUGUGCCU UGGACU CAU Gug   g
         |||  |||||     |||||||||| |||||| ||| |||    
         ccg  acucc     CAUAUACGGG ACCUGA Gua cac   c
cuacuguau   ga     guuCA          U      C   c   gac 

>hsa-mir-539 (-29.20)   [hsa-miR-539:9-30]

     ug          A      G    -    - uuu 
auacu  aGGAGAAAUU UCCUUG UGUG Uucg c   a
|||||  |||||||||| |||||| |||| |||| |   u
uauga  uuuucuuuaa aggaac auac aagu g   u
     gu          c      -    u    a uau 

>hsa-mir-544 (-32.60)   [hsa-miR-544:55-76]

auuuu      cua    u           -     u   -ga  c 
     caucac   ggga cuuguuaaaaa gcaga ucu   uu a
     ||||||   |||| ||||||||||| ||||| |||   ||  
     guagug   cuCU GAACGAUUUUU CGUCU Aga   ag g
uaauc      -aa    U           A     U   acc  g 

>hsa-mir-545 (-37.52)   [hsa-miR-545*:25-46] [hsa-miR-545:63-84]

cccag    ------g   a         - U            A  A     auaaa 
     ccug       cac uuaguaggc c CAGUAAAUGUUU UU GAUGA     u
     ||||       ||| ||||||||| | |||||||||||| || |||||     g
     ggac       gug aaucgucCG G GUUAUUUACAAA GA CUacu     a
-----    accucga   a         U U            C  -     cagua 

>mmu-mir-546 (-49.60)   [mmu-miR-546:32-47]

------------ccucucuucccaaaa     -  -   u   u   ---       C    U    u 
                           cuaaa ca gga cua cAU   GGUGGCA GGAG Cagc a
                           ||||| || ||| ||| |||   ||||||| |||| |||| g
                           gauuu gu ccu gau gug   cuaucgu ucuc guug a
ggagaggaggggucauagugaaacgaa     u  a   u   c   ucc       -    u    u 

>mmu-mir-540 (-42.00)   [mmu-miR-540-5p:6-28] [mmu-miR-540-3p:43-62]

      A      AC        U    -g     
ugggcC AGGGUC  CCUCUGAC CUGU  gcca 
|||||| ||||||  |||||||| ||||  ||| a
auccgG UCCUAG  GGAGACUG GAca  uggg 
      G      CU        -    ga     

>mmu-mir-543 (-31.70)   [mmu-miR-543:47-68]

u   u  u       u  -     --      -    uu 
 gcu aa gagaagu gc ccgcg  uguuuu ucgc  u
 ||| || ||||||| || |||||  |||||| ||||  a
 cga uu UUCUUCA CG GGCGC  ACAAAg agug  u
a   c  u       -  U     UU      c    ua 

>mmu-mir-539 (-31.80)   [mmu-miR-539:8-29]

    ug                 G    -  g cu u 
uacu  aGGAGAAAUUAUCCUUG UGUG Uu g  c u
||||  ||||||||||||||||| |||| || |  |  
auga  uuuucuuuaauaggaac auac aa u  g u
    gu                 -    u  g ag u 

>mmu-mir-541 (-37.50)   [mmu-miR-541:14-38]

    a  u     AAG        A    G     ----------      
gcca aa cagag   GGAUUCUG UGUU GUCAC          ACUcc 
|||| || |||||   |||||||| |||| |||||          |||| a
cggu uu gucuc   ccuaagac acaa cggug          ugaga 
    a  c     aua        -    g     aguaaaauuu      

>mmu-mir-542 (-38.80)   [mmu-miR-542-5p:14-35] [mmu-miR-542-3p:52-73]

  a        g C    GG    UCA         -a   c 
gg ucucagac u UCGG  AUCA   UGUCACGAg  uac a
|| |||||||| | ||||  ||||   |||||||||  |||  
cc agggucug A AGUC  UAGU   ACAGUGUuc  gug c
  g        g A    AA    UAG         cc   u 

>mmu-mir-547 (-35.80)   [mmu-miR-547:49-69]

     a   a     ug           cc   uuaaca g 
gugug ugu ucacu  aggauguacca  cau      g a
||||| ||| |||||  |||||||||||  |||      |  
cacac aua AGUGA  UUCUACAUGGU  gua      c a
     a   G     GU           UC   ------ a 

>rno-mir-540 (-55.30)   [rno-miR-540:52-71]

   ug   c      a      ac        u    -g     
ccc  ggg ugggcc aggguc  ccucugac cugu  gcca 
|||  ||| |||||| ||||||  |||||||| ||||  ||| a
ggg  cuc auccgG UCCUAG  GGAGACUG GAca  uggg 
   gu   -      G      CU        -    ga     

>rno-mir-543 (-35.00)   [rno-miR-543:14-35] [rno-miR-543*:49-69]

      u  u       U  -     --      -    uu 
ggugcu aa gagAAGU GC CCGCG  UGUUUU UCGC  u
|||||| || ||||||| || |||||  |||||| ||||  a
cuacga uu uUCUUCA CG GGCGC  ACAAAg agug  u
      c  u       -  U     UU      c    ua 

>rno-mir-539 (-35.10)   [rno-miR-539:9-30]

                        G    -    cu u 
auacuugaGGAGAAAUUAUCCUUG UGUG Uuug  c u
|||||||||||||||||||||||| |||| ||||  |  
uaugagcuuuucuuuaaugggaac auac aagu  g u
                        -    u    ag u 

>rno-mir-541 (-36.43)   [rno-miR-541:14-38]

    a  u     AAG        A    G     A Uccaaga 
gcca aa cagag   GGAUUCUG UGUU GUCAC C       a
|||| || |||||   |||||||| |||| ||||| |       u
cggu uu gucuc   ccuaagac acaa cggug g       u
    a  c     aua        -    g     a uaaaauu 

>rno-mir-542 (-34.52)   [rno-miR-542-5p:11-32] [rno-miR-542-3p:49-70]

        g C    GG    UCA         auacc 
ucucagac u UCGG  AUCA   UGUCACGAg     a
|||||||| | ||||  ||||   |||||||||     c
agggucug A AGUC  UAGU   ACAGUGUuc     u
        g A    AA    UAG         acgcg 

>hsa-mir-376a-2 (-28.20)   [hsa-miR-376a:50-70]

      u    g  a         u         --   g 
gguauu aaaa gu gauuuuccu cuaugguua  cgu u
|||||| |||| || ||||||||| |||||||||  ||| u
cuauga uuuU CA CUAAAAGGA GAUACUAau  gua u
      c    G  C         -         ug   g 

>hsa-mir-487b (-34.80)   [hsa-miR-487b:51-72]

u       ug        uuau      c u     uuuug 
 ugguacu  gagagugg    cccugu c guucg     c
 |||||||  ||||||||    |||||| | |||||      
 acuauga  uuUUCACC    GGGACA G UAAgc     u
a       cu        UACU      U C     uguac 

>mmu-mir-367 (-34.40)   [mmu-miR-367:47-68]

   -                ca     c    uugaa 
agg ccgucacuguugcuaa  ugcaa ucug     u
||| ||||||||||||||||  ||||| ||||      
ucc gguAGUGGUAACGAUU  ACGUU Aggu     a
   a                UC     A    uaaag 

>mmu-mir-494 (-36.70)   [mmu-miR-494:50-71]

u       u            gu      -   c   -  uuu 
 ugauacu gaaggagagguu  ccgugu ugu uuc uc   a
 ||||||| ||||||||||||  |||||| ||| ||| ||   u
 acuauga uuuuuuCUCCAA  GGCACA ACA AAG ag   u
a       -            AG      U   -   U  uau 

>mmu-mir-376c (-28.80)   [mmu-miR-376c*:16-37] [mmu-miR-376c:53-73]

u   gu   u    g     UA     U         --u  u 
 uug  auu aaaa GUGGA  UUCCU CUAUGUUUA   gc u
 |||  ||| |||| |||||  ||||| |||||||||   || u
 aac  uga uuuU CACUU  AAGGA GAUACAAau   ug u
a   ug   c    G     UA     -         uag  u 

>mmu-mir-487b (-32.20)   [mmu-miR-487b:50-71]

u      ug        uuau      c uc    - uuc 
 gguacu  gagagugg    cccugu c  uucg c   a
 ||||||  ||||||||    |||||| |  |||| |   c
 cuauga  uuUUCACC    GGGACA G  AAgc g   u
a      cu        UACU      U CU    c uac 

>mmu-mir-369 (-34.90)   [mmu-miR-369-5p:14-35] [mmu-miR-369-3p:49-69]

      u  ag               UA      Cuu g 
gguacu ga  ggAGAUCGACCGUGU  UAUUCG   g c
|||||| ||  |||||||||||||||  ||||||   | u
cuauga cu  UUUCUAGUUGGUACA  AUAAgc   c g
      -  cu               UA      -uu a 

>mmu-mir-20b (-35.52)   [mmu-miR-20b:12-34] [mmu-miR-20b*:50-71]

c    u     -CA           G     G   uuuuu 
 cuag agugc   AAGUGCUCAUA UGCAG UAG     a
 |||| |||||   ||||||||||| ||||| |||     u
 gguc ucauG   UUCACGAGUGU ACGUC Auc     a
-    c     AUC           G     -   ucacc 

>mmu-mir-450a-2 (-26.30)   [mmu-miR-450a-5p:8-29] [mmu-miR-450a-3p:43-64]

       UUU     U              uac 
gaacuau   UGCGA GUGUUCCUAAUAUg   u
|||||||   ||||| ||||||||||||||   a
cuuggUA   ACGUU CGUAGGGGUUAuau   u
       CUU     U              gag 

>mmu-mir-503 (-37.70)   [mmu-miR-503:6-28] [mmu-miR-503*:47-68]

     UA    C            G   u a  gu 
ugccc  GCAG GGGAACAGUACU CAG g gu  u
|||||  |||| |||||||||||| ||| | ||  u
augGG  CGUC CCUUUGUUAUGA guc c cg  g
     UC    A            G   - -  ug 

>mmu-mir-291b (-36.10)   [mmu-miR-291b-5p:13-34] [mmu-miR-291b-3p:48-69]

        u u   U         G  - C CU    gg 
acauacag g cGA CAAAGUGGA GC C U  CCgc  c
|||||||| | ||| ||||||||| || | |  ||||   
uguguguc c GUU GUUUUACCU CG G A  ggcg  u
        u U   U         A  U A Ag    gu 

>rno-mir-493 (-49.20)   [rno-miR-493:54-74]

   cuc        u                    cau   u 
ggc   cagggccu guacaugguaggcuuucauu   ugu u
|||   |||||||| ||||||||||||||||||||   |||  
ccg   gucccgGA CGUGUGUCAUCUGGAAGUgg   aca g
   --u        C                    cuu   c 

>rno-mir-379 (-33.60)   [rno-miR-379:16-36] [rno-miR-379*:52-73]

u  uuc   c    g    A       GA       -  uua 
 gg   cug agag UGGU GACUAUG  ACGUAGG cg   u
 ||   ||| |||| |||| |||||||  ||||||| ||   g
 cc   gac ucuC AUCA CUGGUAC  UGUAUCc gu   u
a  uau   -    A    C       AA       a  cuu 

>rno-mir-494 (-35.80)   [rno-miR-494:49-69]

u      u            gu      -   c   -  uuu 
 gauacu gaaggagagguu  ccgugu ugu uuc uc   a
 |||||| ||||||||||||  |||||| ||| ||| ||   u
 cuauga uuuuuucUCCAA  GGCACA ACA AAG ag   u
a      -            AG      U   -   U  uau 

>rno-mir-376c (-26.72)   [rno-miR-376c:52-72]

u  gu   u    g     ua     u         uggua 
 ug  auu aaaa gugga  uuccu cuauguuua     u
 ||  ||| |||| |||||  ||||| |||||||||     u
 ac  uga uuuU CACUU  AAGGA GAUACAAau     u
a  ug   c    G     UA     -         uagua 

>rno-mir-376b (-36.20)   [rno-miR-376b-5p:16-37] [rno-miR-376b-3p:53-73]

u        u           A     U         cgug  u 
 uugguauu aaaagGUGGAU UUCCU CUAUGGUUA    cu c
 |||||||| ||||||||||| ||||| |||||||||    ||  
 aacuauga uuuUUCACCUA AAGGA GAUACUAau    gg c
a        c           C     -         ---a  u 

>rno-mir-376a (-23.21)   [rno-miR-376a*:13-33] [rno-miR-376a:51-71]

u      u    G  A    C    U      Guacaaua 
 gauauu aaaa GU GAUU UCCU CUAUGA        u
 |||||| |||| || |||| |||| ||||||        u
 cuauga uuuU CA CUAA AGGA GAUGCU        a
a      c    G  C    A    -      Aaucagua 

>rno-mir-381 (-28.30)   [rno-miR-381:42-60]

  c   g        u        --g   u 
ag gag uugcccuu guauauuc   guu a
|| ||| |||||||| ||||||||   |||  
uC CUC AACGGGAA CAUAUagg   cag u
  U   G        -        gua   u 

>rno-mir-487b (-32.20)   [rno-miR-487b:50-70]

u      ug        uuau      c uc    - uuc 
 gguacu  gagagugg    cccugu c  uucg c   a
 ||||||  ||||||||    |||||| |  |||| |   c
 cuauga  uuuUCACC    GGGACA G  AAgc g   u
a      cu        UACU      U CU    c uau 

>rno-mir-382 (-34.50)   [rno-miR-382:13-34] [rno-miR-382*:49-69]

      u       -A           UG      - uuu 
gguacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||||| |||||||  |||||||||||  |||||| |   c
ccauga cuuuuUU  CAACAGGCACU  CUAAgc g   u
      -       CA           UA      a ugu 

>rno-mir-485 (-40.80)   [rno-miR-485:12-33]

      u         CU       -    A    auuc 
gauacu ggagAGAGG  GGCCGUG AUGA UUCg    a
|||||| |||||||||  ||||||| |||| ||||    u
cuguga cuucucucc  ucggcac uacu gagc    c
      u         uc       a    -    aaau 

>rno-mir-409 (-36.40)   [rno-miR-409-5p:14-33] [rno-miR-409-3p:47-66]

     u       A    AC         -    - auc 
gguac cggagag GGUU  CCGAGCAAC UUUG c   u
||||| ||||||| ||||  ||||||||| |||| |    
cuaug gcuuuuC CCAA  GGCUCGUUG AAgc g   g
     -       C    GU         U    a gag 

>rno-mir-369 (-34.60)   [rno-miR-369-5p:14-35] [rno-miR-369-3p:49-69]

      u  ag               UA      Cuu  c 
gguacu ga  ggAGAUCGACCGUGU  UAUUCG   ag u
|||||| ||  |||||||||||||||  ||||||   ||  
cuauga cu  UUUCUAGUUGGUACA  AUAAgc   uc g
      -  cu               UA      --u  a 

>rno-mir-374 (-37.90)   [rno-miR-374:10-31]

      ug AU          C          u 
cucgga  g  AUAAUACAAC UGCUAAGUGu c
||||||  |  |||||||||| ||||||||||  
gagccu  u  uauuauguug acgauucacg u
      gu au          c          a 

>rno-mir-363 (-32.70)   [rno-miR-363*:13-34] [rno-miR-363:56-77]

      u   au         CA  A         ga  ag g 
uuuugc guu  CGGGUGGAU  CG UGCAAUUUu  uu  a u
|||||| |||  |||||||||  || |||||||||  ||  |  
aggacg caa  GUCUACCUA  GC ACGUUAAag  ag  u a
      c   AU         UG  -         ag  gg a 

>rno-mir-20b (-37.90)   [rno-miR-20b-5p:8-28] [rno-miR-20b-3p:46-67]

gu       -           G     G   -  uuu 
  agugcCA AAGUGCUCAUA UGCAG Uag gu   g
  ||||||| ||||||||||| ||||| ||| ||    
  ucauGGU UUCACGAGUGU ACGUC Auc ca   c
-c       C           G     -   u  cgu 

>rno-mir-503 (-43.10)   [rno-miR-503:6-28]

     UA                 G   u a  gu 
ugccc  GCAGCGGGAACAGUACU CAG g gu  u
|||||  ||||||||||||||||| ||| | ||  u
auggg  cgucgccuuuguuauga guc c cg  g
     uc                 g   - -  ug 

>hsa-mir-551a (-55.30)   [hsa-miR-551a:61-81]

ggggacug  -   ug            c         ggg   -  ucug 
        cc ggg  acccuggaaauc agagugggu   gcc ag    a
        || |||  |||||||||||| |||||||||   ||| ||    c
        gg ccc  ugggACCUUUGG UCUCACCCA   CGg uc    c
-----aaa  u   gu            U         --G   a  uuug 

>hsa-mir-552 (-49.90)   [hsa-miR-552:61-81]

aaccauucaa                      uu ug        uu aa 
          auauaccacaguuuguuuaacc  u  ccuguugg  g  g
          ||||||||||||||||||||||  |  ||||||||  |  a
          uauauggugucaAACAGAUUGG  A  GGACAAcu  c  u
-------aca                      UC GU        uu cg 

>hsa-mir-553 (-25.00)   [hsa-miR-553:16-36]

cuucaau    u                   G  UU 
       uuua uuuAAAACGGUGAGAUUUU UU  g
       |||| ||||||||||||||||||| ||   
       gagu agauuuugucgcucuaaaa ag  u
------g    c                   g  uc 

>hsa-mir-554 (-33.50)   [hsa-miR-554:16-36]

-----a  u   uaaccuu      --------          --      a   g 
      cc gag       uGCUAG        UCCUGACUCA  GCCAGU cug u
      || |||       ||||||        ||||||||||  |||||| |||  
      gg cuc       acgguu        gggacugggu  ugguca gau c
ucuacg  u   --ucucu      uuauacuu          ag      -   u 

>hsa-mir-92b (-66.12)   [hsa-miR-92b*:20-41] [hsa-miR-92b:61-82]

c     cc   c    g     GA       C            uuuuu 
 gggcc  ggg gggc ggAGG  CGGGACG GGUGCAGUGuug     u
 |||||  ||| |||| |||||  ||||||| ||||||||||||     c
 cccgg  ccc cccg CCUCC  GCCCUGC UCACGUUAUaac     c
-     -c   -    g     -G       -            cgccc 

>hsa-mir-555 (-30.20)   [hsa-miR-555:61-81]

-------     gaac     u  gg   ac      u  ga    u  gac 
       ggagu    ucaga gu  agc  uaccuu gu  gcag gu   c
       |||||    ||||| ||  |||  |||||| ||  |||| ||    
       ucuca    AGUCU CA  UCG  AUGGGA ca  uguc cg   c
uaucuag     aaaU     C  AG   -A      -  gg    -  gaa 

>hsa-mir-556 (-37.44)   [hsa-miR-556-5p:16-37] [hsa-miR-556-3p:55-76]

-------ga                     C  U          cuucau 
         uaguaauaagaaaGAUGAGCU AU GUAAUAUGAG      u
         ||||||||||||||||||||| || ||||||||||       
         aucauuauuuUUUCUACUCGA UA CAUUAUAcuu      u
acaacuucc                     U  C          uacaua 

>hsa-mir-557 (-33.00)   [hsa-miR-557:61-83]

agaaugggcaaaugaacaguaaa  ug     cu       u   -   ---u   g 
                       uu  gaggc  ggggccc ccc ugc    gcu g
                       ||  |||||  ||||||| ||| |||    ||| a
                       aa  uUCUG  UUCCGGG GGG ACG    uga g
-------------agguggagga  gu     --       U   C   UUUG   a 

>hsa-mir-558 (-44.60)   [hsa-miR-558:61-79]

gugugugu  g   g      u                  ua  cu     
        gu ugu uguggu auuuugguauaguagcuc  ga  cuau 
        || ||| |||||| ||||||||||||||||||  ||  ||| u
        cg gca acacca UAAAACCAUGUCGUCGAG  cu  gaua 
------gu  g   a      -                  Uc  uu     

>hsa-mir-559 (-59.10)   [hsa-miR-559:16-36]

-----                                     ------   u 
     gcuccaguaacaucuUAAAGUAAAUAUGCACCAAAAu      uac u
     |||||||||||||||||||||||||||||||||||||      ||| u
     cgaggucauuguaggauuucauuuauacgugguuuug      aug u
acccu                                     acauaa   g 

>hsa-mir-561 (-57.60)   [hsa-miR-561:61-82]

cuucauccaccag            a                     agag 
             uccuccaggaac ucaaggaucuuaaacuuugcc    c
             |||||||||||| |||||||||||||||||||||    u
             aggggguccuUG AGUUCCUAGAAUUUGAAACgg    a
--------uacca            A                     aaac 

>hsa-mir-562 (-25.00)   [hsa-miR-562:61-80]

agugaa       -----   -  u     -   u       ua   u   u u 
      auugcua     ggu ca auggu cag cuacuuu  gag aau g g
      |||||||     ||| || ||||| ||| |||||||  ||| ||| | a
      uaacggu     uca GU UACCA GUC GAUGAAA  cuu uug c a
------       guccc   C  U     U   -       --   u   u a 

>hsa-mir-563 (-26.90)   [hsa-miR-563:52-70]

agcaaagaag  u      cucua              cu       
          ug guugcc     ggaaauguguguug  cugaug 
          || ||||||     ||||||||||||||  ||||| u
          ac cgaugg     CCUUUGCAUACAGU  GAuuaa 
----------  -      ---uC              UG       

>hsa-mir-564 (-54.60)   [hsa-miR-564:16-34]

---c   -ca    g   cA           A  ----    aaca     g 
    ggg   gcgg ugc  GGCACGGUGUC GC    AGGC    uggcc a
    |||   |||| |||  ||||||||||| ||    ||||    |||||  
    ccc   cgcc gcg  cugugccgcgg cg    uccg    gccgg g
cagu   aug    a   -c           -  ggcc    --gg     a 

>hsa-mir-566 (-30.80)   [hsa-miR-566:16-34]

----------------gcuagg  u   gg      --C    GA     A  a u 
                      cg ggu  cGGGCG   CUGU  UCCCA Cu c c
                      || |||  ||||||   ||||  ||||| || |  
                      gc cca  guucgc   gacg  ggggu gg g a
cgagugacguuggaagcggagg  -   -a      uaa    ac     c  a g 

>hsa-mir-567 (-27.80)   [hsa-miR-567:16-38]

------------ggauucuua   gacA              G      ---  u 
                     uag    GUAUGUUCUUCCAG ACAGAA   Ca u
                     |||    |||||||||||||| ||||||   || c
                     auc    cguacaagaagguc uguuuu   gu u
ucguuauugaaaaaaaaaaaa   aaaa              a      auc  u 

>hsa-mir-568 (-32.00)   [hsa-miR-568:16-35]

--g        -     u        A         ACuucc       a 
   auauacac uauau AUGUAUAA UGUAUACAC      uauaugu u
   |||||||| ||||| |||||||| |||||||||      |||||||  
   uaugugug auaug uacauauu auauaugug      auauaca c
gua        g     -        -         --auau       c 

>hsa-mir-551b (-40.00)   [hsa-miR-551b*:22-43] [hsa-miR-551b:61-81]

agaugugc    c     ca          CG     - -AGA    gug 
        ucuc uggcc  uGAAAUCAAG  UGGGU G    CCug   c
        |||| |||||  ||||||||||  ||||| |    ||||    
        agag gucgg  ACUUUGGUUC  ACCCA C    gggc   a
----aaua    u     aG          AU     G Ggaa    aag 

>hsa-mir-569 (-22.19)   [hsa-miR-569:61-81]

-    uu    ga        g     --       aac   aucagaa 
 ggua  guua  uuaauuuu uggga  cauuaac   agc       g
 ||||  ||||  |||||||| |||||  |||||||   |||        
 uuau  cagu  aauUGAAA GUCCU  GUAAUUG   ucg       c
u    uu    -g        G     AA       Auu   acuacaa 

>hsa-mir-570 (-44.10)   [hsa-miR-570:60-81]

cuagauaag         g                 a      c c      
         uuauuaggu ggugcaaagguaauugc guuuuu c auuau 
         ||||||||| ||||||||||||||||| |||||| | |||| u
         gguagucca ccaCGUUUCCAUUAACG CAAAAG g uaauu 
------uga         a                 A      C u      

>hsa-mir-571 (-31.70)   [hsa-miR-571:61-81]

ccuc      ----a  aa      -  u    u   -cuu        cc 
    aguaag     cc  gcucag ug gcca uuc    gucuguag  a
    ||||||     ||  |||||| || |||| |||    ||||||||   
    uuauuc     gG  UGAGUC AC CGGU GAG    cggguauc  u
-auc      guccg  AG      U  -    U   Uucu        ug 

>hsa-mir-572 (-58.30)   [hsa-miR-572:61-80]

gucgaggccguggcccggaaguggucg          -       -a     c 
                           gggccgcugc gggcgga  gggcg c
                           |||||||||| |||||||  |||||  
                           CCCGGUGGCG CUCGCCU  uucgu u
-----------agggcgcccggaccgA          G       Gc     g 

>hsa-mir-573 (-28.60)   [hsa-miR-573:16-39]

-uuu   -gg    u      --      GU      -G      au u  u 
    agc   uuuc ccCUGA  AGUGAU  GUAACU  AUCAGg  c ac c
    |||   |||| ||||||  ||||||  ||||||  ||||||  | ||  
    uug   ggag gggacu  ucgcug  uauuga  ugguuu  g ug a
guuu   aga    u      gu      --      aa      cu c  u 

>hsa-mir-574 (-61.10)   [hsa-miR-574-5p:25-47] [hsa-miR-574-3p:61-82]

gggaccug g      c         A U                 Ug  gc 
        c ugggug gggcgugUG G GUGUGUGUGUGAGUGUG  uc  u
        | |||||| ||||||||| | |||||||||||||||||  ||   
        g acucac cccgcACAC C CACACACGUACUCGCAC  gg  c
-------- g      a         - -                 cu  gc 

>hsa-mir-575 (-36.10)   [hsa-miR-575:61-79]

---------aauuca  -    -   -         -  -  u   --        
               gc ccug cca cuggcuuau gu ca gac  cuugggc 
               || |||| ||| ||||||||| || || |||  |||||| u
               CG GGAC GGU GACCGAGua ca gu cug  ggacuca 
cucaacucaccguga  A    A   U         a  c  -   uc        

>hsa-mir-576 (-46.60)   [hsa-miR-576-5p:16-37] [hsa-miR-576-3p:55-76]

--------ua     c  c              C            g   ua 
          caauc aa gaggAUUCUAAUUU UCCACGUCUUUg uaa  a
          ||||| || |||||||||||||| |||||||||||| |||   
          guuag uu cucCUAAGGUUAAA AGGUGUAGAAac guu  g
accaauauug     c  a              A            g   ug 

>hsa-mir-577 (-49.02)   [hsa-miR-577:16-36]

-----------                       A      U     augaa 
           ugggggagugaagagUAGAUAAA UAUUGG ACCUG     u
           ||||||||||||||||||||||| |||||| |||||     c
           accccuuuacuucucgucuauuu auaacu uggac     u
cauucaucuau                       c      u     cggag 

>hsa-mir-578 (-41.50)   [hsa-miR-578:61-81]

agauaaauc                   cg  ca          ccu      
         uauagacaaaauacaaucc  ga  acaagaagcu   auagc 
         |||||||||||||||||||  ||  ||||||||||   |||| u
         auauuuguuuuaUGUUAGG  CU  UGUUCUUCga   ugucc 
------uau                   AU  CG          ---      

>hsa-mir-579 (-49.30)   [hsa-miR-579:62-84]

cauauuag   a                                cg     aa 
        guu augcaaaaguaaucgcgguuugugccagauga  auuug  u
        ||| ||||||||||||||||||||||||||||||||  |||||   
        caa uacguuuuuaUUAGCGCCAAAUAUGGUUUACU  Uaaau  u
--------   c                                --     aa 

>hsa-mir-580 (-47.60)   [hsa-miR-580:61-82]

auaa      ca                      ga          uaa 
    aauuuc  auuggaaccuaaugauucauca  cucagauauu   g
    ||||||  ||||||||||||||||||||||  ||||||||||   u
    uuaaag  uggccuuGGAUUACUAAGUAGU  GAGUUuauga   u
----      ac                      AA          caa 

>hsa-mir-581 (-38.72)   [hsa-miR-581:16-36]

-------   a    a          -       C       G   uuuua 
       guu ugug agguauUCUU GUGUUCU UAGAUCA Ugc     g
       ||| |||| |||||||||| ||||||| ||||||| |||     a
       caa acac uccauaagaa cacaaga aucuagu gug     a
cguccac   g    a          a       a       -   uuuaa 

>hsa-mir-582 (-44.04)   [hsa-miR-582-5p:16-38] [hsa-miR-582-3p:53-74]

----------auc  ug       aUUA                   Uaaucu 
             ug  cucuuug    CAGUUGUUCAACCAGUUAC      a
             ||  |||||||    |||||||||||||||||||       
             ac  gggaaac    GUCAACAAGUUGGUCAAUg      a
uuacaaagaugaa  gu       CCAA                   uuaauc 

>hsa-mir-583 (-41.40)   [hsa-miR-583:16-36]

aacucacacauua          A        U      -     
             acCAAAGAGG AGGUCCCA UACugc aggg 
             |||||||||| |||||||| |||||| ||| a
             ugguuucucc uccagggu augacg uucu 
-------------          a        c      a     

>hsa-mir-584 (-56.00)   [hsa-miR-584:16-37]

-------     u         UUA     U            G a   ug 
       uaggg gaccagcca   UGGUU GCCUGGGACUGA g auu  c
       ||||| |||||||||   ||||| |||||||||||| | |||   
       guccc cugguuggu   accaa cggaccuugacu u uag  u
caacgaa     u         cgg     c            g a   gg 

>hsa-mir-585 (-54.90)   [hsa-miR-585:61-79]

uggggugucug  c                c              a aaag 
           ug uauggcagcccuagca acagauacgcccag g    c
           || |||||||||||||||| |||||||||||||| |     
           ac augucgucgggAUCGU UGUCUAUGCGGGUu c    c
----------a  a                A              g aagu 

>hsa-mir-548a-1 (-35.60)   [hsa-miR-548a-3p:61-82]

---ug    gagguauuaag                   g u     c a   a 
     cagg           uuggugcaaaaguaauugu a uuuug c uua a
     ||||           ||||||||||||||||||| | ||||| | |||  
     gucc           aaccaCGUUUUCAUUAACG U AAAAC g aau a
uuaug    ----------a                   G C     a c   g 

>hsa-mir-586 (-47.90)   [hsa-miR-586:16-37]

----------au     --                           U    au 
            ggggu  aaaaccauUAUGCAUUGUAUUUUUAGG CCca  a
            |||||  ||||||||||||||||||||||||||| ||||  c
            ucuca  uuuugguaauacguaacauaaaaaucc gggu  a
uauucuucuauu     cu                           c    gu 

>hsa-mir-587 (-46.42)   [hsa-miR-587:16-36]

cucc    -cacccu        A                gcu    ga 
    uaug       cUUUCCAU GGUGAUGAGUCACagg   cagg  a
    ||||       |||||||| ||||||||||||||||   ||||  u
    auac       gaaaggug ccacuacucagugucc   gucu  g
---u    ccuaccc        a                -ac    gu 

>hsa-mir-548b (-48.60)   [hsa-miR-548b-5p:25-46] [hsa-miR-548b-3p:61-82]

cagacuauauau                       U      G   uuuau 
            uuagguuggcgcAAAAGUAAUUG GGUUUU GCC     u
            ||||||||||||||||||||||| |||||| |||      
            aauccaaccgUGUUUUCGUUGAC CCAAGA Cgg     u
-------uucau                       U      A   uaacu 

>hsa-mir-588 (-42.90)   [hsa-miR-588:16-36]

ag       a       -     CAA     U       uau 
  cuuaggu ccaauUU GGCCA   UGGGU AGAACac   u
  ||||||| ||||||| |||||   ||||| |||||||   c
  gaauccg gguuaaa ccggu   accca ucuugug   c
--       -       a     acc     u       uua 

>hsa-mir-548a-2 (-39.30)   [hsa-miR-548a-3p:61-82]

ugugaug        guuu               -g     uu        a 
       uguauuag    gugcaaaaguaauug  gguuu  ugccguua a
       ||||||||    |||||||||||||||  |||||  ||||||||  
       auauaauc    caCGUUUUCAUUAAC  UCAAA  ACgguaau a
------a        aaac               GG     --        g 

>hsa-mir-589 (-41.40)   [hsa-miR-589:24-45] [hsa-miR-589*:61-84]

ucca   ugu  cca     cc   A     -A   C  C       u   u 
    gcc   gc   gcagc  cUG GAACC  CGU UG UCUGAGc ggg a
    |||   ||   |||||  ||| |||||  ||| || ||||||| ||| c
    cgg   cg   cgucg  GAC CUUGG  GUA AC AGACUug ucc u
---c   --u  -ac     cA   C     CC   A  A       -   g 

>hsa-mir-550-1 (-46.00)   [hsa-miR-550:22-44] [hsa-miR-550*:61-82]

u  u    u c   cu   gcA                  G C     gu 
 ga gcuu g ugg  ggu   GUGCCUGAGGGAGUAAGA C Cuguu  u
 || |||| | |||  |||   |||||||||||||||||| | |||||  g
 cu ugaa c acc  cUA   CACGGACUCCCUCAUUCU G gauag  u
u  c    - a   -u   ---                  - U     aa 

>hsa-mir-550-2 (-53.10)   [hsa-miR-550:22-44] [hsa-miR-550*:61-82]

ugaugcuuu   g     u cA                  G C     gu 
         gcu gcugg g  GUGCCUGAGGGAGUAAGA C Cuguu  u
         ||| ||||| |  |||||||||||||||||| | |||||  g
         uga cgacc c  CACGGACUCCCUCAUUCU G gauag  u
-----ucuc   g     u UA                  - U     ac 

>hsa-mir-590 (-31.80)   [hsa-miR-590-5p:16-37] [hsa-miR-590-3p:56-76]

--------uagc        a  G       U       G     ua   u 
            cagucaga au AGCUUAU CAUAAAA UGCAG  ugg g
            |||||||| || ||||||| ||||||| |||||  ||| a
            guuagucu UG UCGAAUA GUAUUUU AUguc  acu a
acgacguacaaa        c  A       U       A     ua   g 

>hsa-mir-591 (-22.50)   [hsa-miR-591:16-35]

----ucuuaucaa    gu   -   U  -    U  UUG    ---a  g 
             ugag  AGA CCA GG GUUC CA   Uaau    gu u
             ||||  ||| ||| || |||| ||   ||||    || a
             acuc  ucu ggu cc cagg gu   auug    ua g
cuuagucaucuaa    ug   c   c  u    u  -ca    guug  a 

>hsa-mir-592 (-38.30)   [hsa-miR-592:16-37]

---------ua     c     ca        A    C        gu    a 
           uuaug cauga  UUGUGUCA UAUG GAUGAUGU  ugug u
           ||||| |||||  |||||||| |||| ||||||||  ||||  
           aaugc guacu  aacgcagu gugc cuacugcg  acac g
caacacugcag     a     ac        g    a        --    g 

>hsa-mir-593 (-44.71)   [hsa-miR-593*:16-40] [hsa-miR-593:79-97]

-------c      aaucugu    C  C    A     UG   AGCcc       u 
        ccccag       cAGG AC AGCC GGCAU  CUC     guuuccc c
        ||||||       |||| || |||| |||||  |||     |||||||  
        GGGGUC       GUCU UG uugg ucgug  gag     cgagggg u
uccUCUUU      -------    C  U    g     gu   --gaa       g 

>hsa-mir-595 (-32.20)   [hsa-miR-595:61-81]

-ac  --aag   g  c  auuua      --       -    g ag   u 
   gg     ccu ca gc     acacca  gcacgcu caau u  ucu g
   ||     ||| || ||     ||||||  ||||||| |||| |  ||| u
   cc     gga gU UG     UGUGGU  CGUGUGA Guug a  agg a
ugu  gcgaa   g  C  -----      GC       A    g ca   a 

>hsa-mir-596 (-36.50)   [hsa-miR-596:16-36]

agca     uc       CCU  -C     -  --U     ac 
    cggcc  uccgAAG   GC  CGGCU CC   CGGGa  c
    |||||  |||||||   ||  ||||| ||   |||||  u
    gccgg  aggcuuc   cg  gucga gg   gcccu  g
----     --       --c  uc     c  uac     cc 

>hsa-mir-597 (-36.60)   [hsa-miR-597:16-37]

u   --          -----g  U     UC  U         gaag   gu 
 acu  uacucuacgu      UG GUCAC  GA GACCACUGU    aca  a
 |||  ||||||||||      || |||||  || |||||||||    |||   
 ugg  augagaugua      ac cggug  cu uuggugaca    ugu  a
c   uc          augcga  u     uu  c         ----   aa 

>hsa-mir-598 (-38.30)   [hsa-miR-598:61-82]

gcuugaugaugcugcugaugcu         cc     gu  g   uggaa 
                      ggcggugau  cgaug  gu agc     a
                      |||||||||  |||||  || |||      
                      CUGCUACUG  GCUAC  CA Ucg     u
------gagccuacuacuacuA         UU     UG  -   ugggg 

>hsa-mir-599 (-39.00)   [hsa-miR-599:61-80]

aaagacaugcu     c     --                 gg     -   u 
           gucca agugu  guuugauaagcugacau  gacag gga u
           ||||| |||||  |||||||||||||||||  ||||| ||| c
           uaggu ucaua  CAAACUAUUUGACUGUG  UUGuc cuu u
--------cag     -     cc                 --     a   u 

>hsa-mir-548a-3 (-45.90)   [hsa-miR-548a-5p:25-46] [hsa-miR-548a-3p:61-82]

ccuagaaugu     g  c                 G      A     ac 
          uauua gu ggugcAAAAGUAAUUGC AGUUUU CCauu  u
          ||||| || ||||||||||||||||| |||||| |||||   
          auaau ca ccaCGUUUUCAUUAACG UCAAAA gguaa  u
-------uuc     g  a                 G      C     cu 

>hsa-mir-600 (-40.20)   [hsa-miR-600:61-83]

aagucacgu  u u    cca    cau  g               c  gcagu 
         gc g ggcu   gcuu   ag aaggcucuugucugu ag     g
         || | ||||   ||||   || ||||||||||||||| ||      
         cg c ccga   cgga   UC UUCCGAGAACAGACA UC     g
-------cc  u -    --c    --C  G               U  Auuga 

>hsa-mir-601 (-23.90)   [hsa-miR-601:16-37]

ugcaugag   gu  --U  U  --      G    A  -   ca 
        uuc  cu   GG CU  AGGAUU UUGG GG AGu  g
        |||  ||   || ||  |||||| |||| || |||  a
        agg  gg   cc ga  uccuag gacc cc uca  a
--------   ug  uuu  u  ag      g    -  a   aa 

>hsa-mir-602 (-49.50)   [hsa-miR-602:16-38]

-----------uu   a   cc        C   C   -A   G       cu  g 
             cuc ccc  gccuGACA GGG GAC  GCU CGGCCCg  gu u
             ||| |||  |||||||| ||| |||  ||| |||||||  ||  
             gag ggg  cggacugu ccu cug  uga gccgggc  ca u
guccccccgagac   a   aa        -   -   cg   -       -u  c 

>hsa-mir-603 (-40.50)   [hsa-miR-603:61-82]

gauugaugc      u    u                  cuuc     ua 
         uguugg uugg gcaaaaguaauugcagug    ccauu  a
         |||||| |||| ||||||||||||||||||    |||||  a
         auaauu aacc CGUUUUCAUUAACGUCAC    gguaa  a
------uuc      c    u                  ACAC     ug 

>hsa-mir-604 (-27.30)   [hsa-miR-604:61-79]

------a  -    c  g     cc    a -  u  c     cacu   ag 
       ga gcau gu cuuga  uucc c gc cu guguc    agc  g
       || |||| || |||||  |||| | || || |||||    |||   
       cu cgug CA GGACU  AAGG G CG GA cacag    uug  c
agaggua  a    a  -     -U    C U  -  -     ucuu   ga 

>hsa-mir-605 (-52.30)   [hsa-miR-605:16-38]

gc                   C              CU  gg 
  ccuagcuugguucUAAAUC CAUGGUGCCUUCUC  ug  a
  ||||||||||||||||||| ||||||||||||||  ||  a
  ggauugaacuaagauuuag guaucacggaagag  ac  a
--                   a              --  aa 

>hsa-mir-606 (-45.20)   [hsa-miR-606:61-81]

------------      c                 u         a    ug 
            uguauc uugguuuuuaguaguuu acuaugaug ggug  c
            |||||| ||||||||||||||||| ||||||||| ||||  c
            acaUAG AACUAAAAGUCAUCAAA ugauacuac ccac  a
accaguccguga      A                 -         c    cu 

>hsa-mir-607 (-72.30)   [hsa-miR-607:61-81]

uug                               g         g  c 
   ccuaaagucacacagguuauagaucuggauu gaacccagg ag c
   ||||||||||||||||||||||||||||||| ||||||||| || a
   ggguuucaguguguuCAAUAUCUAGACCUAA CUUGggucc uc g
---                               A         g  a 

>hsa-mir-608 (-34.50)   [hsa-miR-608:16-40]

-gg   -aa g  g      -  UG  G  ---G   C     CGUuuaaaa 
   gcc   g ug gccAGG GG  GU UU    GGA AGCUC         a
   |||   | || |||||| ||  || ||    ||| |||||         g
   ugg   c ac ugguuc cc  cg aa    ccu ucgag         g
aga   aca g  g      u  gu  g  acua   -     aaccucuac 

>hsa-mir-609 (-56.90)   [hsa-miR-609:16-35]

---ug   g                 U            gu    aaug 
     cuc gcuguuccuAGGGUGUU CUCUCAUCUCUg  cuau    g
     ||| ||||||||||||||||| ||||||||||||  ||||     
     gag cgacaaggaucccacaa gggaguagagau  gaua    g
ccaag   a                 c            --    aauu 

>hsa-mir-610 (-56.80)   [hsa-miR-610:16-36]

-------       g     g                        ca      
       ucuauuu ucuua gUGAGCUAAAUGUGUGCUGGGAca  uuuga 
       ||||||| ||||| ||||||||||||||||||||||||  |||| g
       agguaaa agaau cacucgauuuacacacgacccugu  aaacc 
ugaucuc       a     a                        --      

>hsa-mir-611 (-25.60)   [hsa-miR-611:40-62]

aaaau   g   g g        ag   -  gac 
     ggu aga c uugagggg  uuc ca   g
     ||| ||| | ||||||||  ||| ||    
     cCA UCU G GGCUCCCC  GAG Gu   g
-acac   G   - G        AG   C  aga 

>hsa-mir-612 (-51.00)   [hsa-miR-612:16-40]

------   -ca     --a  c  CU   C          -        -a  a 
      ucc   ucugg   cc uG  GGG AGGGCUUCUG AGCUCCUU  gc c
      |||   |||||   || ||  ||| |||||||||| ||||||||  ||  
      agg   ggacc   gg ac  ccc ucccggggac ucggggag  cg u
acucuc   aca     gac  u  cu   -          c        ga  a 

>hsa-mir-613 (-28.40)   [hsa-miR-613:61-80]

----    a   c  uuc    ugu        cc      ua    cuua 
    ggug gug gu   caag   gaagggac  uuccug  gugu    u
    |||| ||| ||   ||||   ||||||||  ||||||  ||||     
    ccac uac ca   GUUU   CUUCCUUG  AAGGAu  caua    a
auuu    a   u  -CC    ---        -U      ga    acau 

>hsa-mir-614 (-44.30)   [hsa-miR-614:54-76]

ucuaagaaac     gg   -   aa     -           ---   cc 
          gcagu  ucu cug  gccug caggggcaggc   cag  c
          |||||  ||| |||  ||||| |||||||||||   |||  u
          cgucg  gga gac  UGGAC GUUCUUGUCCG   Guc  g
----------     uu   a   GG     C           CAA   ac 

>hsa-mir-615 (-58.80)   [hsa-miR-615-5p:18-39] [hsa-miR-615-3p:61-82]

cuc   ag   c          -UC     U        Cu    g ug 
   ggg  ggg gggagGGGGG   CCCGG GCUCGGAU  cgag g  c
   |||  ||| ||||||||||   ||||| ||||||||  |||| |  u
   ccc  ccc cccUUCUCCC   GGGUC CGAGCCUg  gcuu u  u
ccc   aa   -          UCU     -        --    g ua 

>hsa-mir-616 (-51.40)   [hsa-miR-616*:16-37] [hsa-miR-616:56-77]

-------u     a       cA      A                -  gac 
        uaggu auuccuc  CUCAAA CCCUUCAGUGACUUcc au   a
        ||||| |||||||  |||||| |||||||||||||||| ||    
        gucca uaaggaG  GAGUUU GGGAGGUUACUGAagg ua   u
aaaauuuu     g       AC      -                a  aag 

>hsa-mir-548c (-46.90)   [hsa-miR-548c-5p:25-46] [hsa-miR-548c-3p:61-82]

cauuggcauc                         C         Cau   u 
          uauuagguuggugcAAAAGUAAUUG GGUUUUUGC   uac u
          ||||||||||||||||||||||||| |||||||||   ||| u
          auaauucaaccaCGUUUUCAUUAAC CUAAAAACg   aug c
-------uuc                         U         ---   a 

>hsa-mir-617 (-50.10)   [hsa-miR-617:16-37]

---------------c    u         A     C              Ccau 
                auca aaggagccu GACUU CCAUUUGAAGGUGG    u
                |||| ||||||||| ||||| ||||||||||||||     
                uagu uuccucgga cugaa gguaaacuuccacc    u
cgaggaguaaauaacu    c         c     u              aucc 

>hsa-mir-618 (-34.60)   [hsa-miR-618:16-38]

---cu  ug       -cc    U  A      C        guaau   -  a 
     cu  uucacag   AAAC CU CUUGUC UUCUGAGU     uac gu c
     ||  |||||||   |||| || |||||| ||||||||     ||| ||  
     ga  agguguc   uuug ga gaacag aggacucg     aug cg a
agucu  gu       cca    -  c      -        -----   a  u 

>hsa-mir-619 (-31.20)   [hsa-miR-619:61-84]

-c  cc  -cu   ccucccaaaa       au          ag   cugc    ga 
  gc  ac   cag          ugcuggg  uacaggcaug  cca    gguc  c
  ||  ||   |||          |||||||  ||||||||||  |||    ||||   
  cg  ug   guc          aUGACCC  GUGUUUGUAC  GGU    CCAG  c
ga  uu  acu   ----------       --          -A   ----    ua 

>hsa-mir-620 (-27.90)   [hsa-miR-620:61-80]

-----------aua   a          g            auau    aua 
              uau ucuauaucua cuccguauauau    auau   u
              ||| |||||||||| ||||||||||||    ||||    
              aUA AGAUAUAGAU GAGGUAuauaua    uaua   a
aagaaacgaacaaa   A          A            ccuc    gau 

>hsa-mir-621 (-35.80)   [hsa-miR-621:61-81]

uagauuga   ---      u   u        g  c     u   cug   aa 
        gga   aggggc gag gguaggcg ug ugcug gcu   aug  g
        |||   |||||| ||| |||||||| || ||||| |||   |||   
        ccu   ucucug uuU CCAUUCGC AC ACGAU CGG   uac  a
--------   ggg      u   -        G  A     -   -ug   cc 

>hsa-mir-622 (-35.50)   [hsa-miR-622:61-81]

-agagaag  -  aca   a  gg             a -  -  g   c 
        cu gg   agu cu  ucucagcagauug g ga ga cac a
        || ||   ||| ||  ||||||||||||| | || || |||  
        ga uc   uCG GG  GGAGUCGUCUGAC c cu cu gug c
ucacagua  g  --g   A  UU             A a  a  g   a 

>hsa-mir-623 (-34.60)   [hsa-miR-623:16-38]

-guacaca     ag    CCU       GC       Uu  a   ua     
        guaga  cAUC   UGCAGGG  UGUUGGG  gc ucc  agcu 
        |||||  ||||   |||||||  |||||||  || |||  ||| g
        cguuu  guag   augucuc  guagccc  cg agg  ucgu 
gucuucca     cu    ---       au       uu  -   --     

>hsa-mir-624 (-56.90)   [hsa-miR-624*:16-37] [hsa-miR-624:54-74]

-----------                                   -- Ag  g 
           aaugcuguuucaaggUAGUACCAGUACCUUGUGUU  C  ug a
           |||||||||||||||||||||||||||||||||||  |  ||  
           uuacgauagaguUCCAUUAUGGUUAUGGAACACaa  g  ac a
gugaauccaca                                   au ga  c 

>hsa-mir-625 (-74.90)   [hsa-miR-625:15-35] [hsa-miR-625*:52-73]

                                     uaau 
aggguagagggaugAGGGGGAAAGUUCUAUAGUCCug    u
|||||||||||||||||||||||||||||||||||||    a
ucccgucucccuACUCCCCCUUUCAAGAUAUCAGgac    g
                                     ucua 

>hsa-mir-626 (-22.00)   [hsa-miR-626:61-79]

acugauauauuu     auu     gc      g        u   au    au 
            gucuu   ugaga  ugagga uauuuuua gca  cuga  g
            |||||   |||||  |||||| |||||||| |||  ||||   
            cggaa   auuuu  acUUCU GUAAAAGU UGU  GAcu  a
----------uu     ---     -a      -        C   -C    cu 

>hsa-mir-627 (-56.50)   [hsa-miR-627:16-37]

---------ua       c              U              ug u 
           cuuauua ugguaGUGAGUCUC AAGAAAAGAGGAgg  g u
           ||||||| |||||||||||||| ||||||||||||||  |  
           gaauaau accaucacucagag uucuuuucuccucc  u g
aucaucauaaa       a              u              uu u 

>hsa-mir-628 (-36.40)   [hsa-miR-628-5p:23-44] [hsa-miR-628-3p:61-81]

auagcugu  u   a      cA  -   A   A             aaaa 
        ug guc cuuccu  UG CUG CAU UUUACUAGAGGgu    u
        || ||| ||||||  || ||| ||| |||||||||||||     
        ac cgg gaaggg  GC GAC GUG GAAUGAUCUucca    u
-------u  u   -      aA  U   G   A             auaa 

>hsa-mir-629 (-74.80)   [hsa-miR-629:22-42] [hsa-miR-629*:61-82]

ucccuuuccc                                   ac  u 
          aggggaggggcUGGGUUUACGUUGGGAGAACUuuu  gg g
          |||||||||||||||||||||||||||||||||||  ||  
          uccccucccCGACCCGAAUGCAACCCUCUUGgagg  cc a
----uccguc                                   -a  a 

>hsa-mir-630 (-27.30)   [hsa-miR-630:61-82]

aacuuaacaucau       -     -   --c     uu         g 
             gcuaccu cuuug uau   auauu  guuauucug u
             ||||||| ||||| |||   |||||  |||||||||  
             ugaUGGA GGGAC AUG   UAUGA  caguaagac c
-uauaucaauucu       A     C   UCU     uc         a 

>hsa-mir-631 (-38.00)   [hsa-miR-631:16-36]

gu      cc    uAGA      C   A  -      a 
  ggggag  uggu    CCUGGC CAG CC UCAGCu c
  ||||||  ||||    |||||| ||| || |||||| a
  ccucuc  accg    ggacug guc gg agucga c
--      ac    ---g      a   a  u      a 

>hsa-mir-33b (-59.10)   [hsa-miR-33b:16-35] [hsa-miR-33b*:54-75]

-----  ---    -   c   c  -          UU         g   g 
     gc   gggc ggc ccg gG UGCAUUGCUG  GCAUUGCac ugu u
     ||   |||| ||| ||| || ||||||||||  ||||||||| ||| g
     cg   cccg ccg ggC CC ACGUGACGGC  CGUGACgug gcg a
cacca  guc    g   a   -  G          UC         g   g 

>hsa-mir-632 (-43.40)   [hsa-miR-632:61-79]

-  c  c       a  g  ug            g  g    cga      
 cg cu cuaccgc gu cu  acgggaggcgga cg ggaa   ggccg 
 || || ||||||| || ||  |||||||||||| || ||||   |||| u
 gc ga gguggug cA GG  UGUCCUUCGUCU GU uuuu   ccggc 
u  c  u       -  G  --            -  G    --a      

>hsa-mir-633 (-34.00)   [hsa-miR-633:61-83]

-aa    ucu    cucu    cuu     c              a   aaa 
   ccuc   uagc    guuu   uauug gguagauacuauua ccu   a
   ||||   ||||    ||||   ||||| |||||||||||||| |||   u
   ggag   guug    uaAA   AUAAC CCAUCUAUGAUAAU gga   g
aua    --u    ---u    ---     A              C   aga 

>hsa-mir-634 (-28.50)   [hsa-miR-634:61-82]

aaacccacacc    c    ug  ca  g          -c     -   a    
           acug auuu  gc  uc aggguugggg  uuggu guc ugc 
           |||| ||||  ||  || ||||||||||  ||||| ||| || c
           ugau uagg  cg  AG UUUCAACCCC  GACCA uag acc 
---------uc    -    ua  aC  G          AC     A   a    

>hsa-mir-635 (-32.10)   [hsa-miR-635:16-38]

caga a      gc  CU       U         UCC      cuuu   a 
    g ggagcu  cA  UGGGCAC GAAACAAUG   auuagg    guu u
    | ||||||  ||  ||||||| |||||||||   ||||||    ||| g
    c cuucga  gu  accugug uuuuguuac   uagucc    caa g
-uaa -      --  -u       -         ---      ucuu   a 

>hsa-mir-636 (-55.80)   [hsa-miR-636:61-83]

--ug  g       cggga  gc           c   -cc   u  cu  aa 
    gc gccuggg     gc  gcgggcggggc ggc   cgc gc  gg  u
    || |||||||     ||  ||||||||||| |||   ||| ||  ||   
    cg cggaucc     cg  CGCCCGCCCUG UCG   GUG cg  cc  u
gcug  g       -----  -A           C   UUC   U  cc  aa 

>hsa-mir-637 (-34.90)   [hsa-miR-637:61-84]

--------  -  ua  gu  -u      --   u     c   --   u  -  uc 
        ug gc  ag  gu  ggcucg  ggc cccca ugc  agu ac cc  c
        || ||  ||  ||  ||||||  ||| ||||| |||  ||| || ||  c
        ac cg  uc  CG  UCGGGC  UCG GGGGU Acg  uca ug gg  c
cuucauag  a  --  UG  UC      UU   -     C   ag   u  c  cu 

>hsa-mir-638 (-54.90)   [hsa-miR-638:16-40]

gugagcg     g    GG U   G     -  --    -   ----Ua  -g   g 
       ggcgc gcAG  A CGC GGCGG GU  GGCG GCC      gg  cgc g
       ||||| ||||  | ||| ||||| ||  |||| |||      ||  ||| a
       ucgcg cguc  u gcg ccgcc cg  ccgc cgg      cc  gcg g
-------     g    aa -   g     g  ug    g   uaaggg  ag   g 

>hsa-mir-639 (-41.60)   [hsa-miR-639:61-83]

------u   - gac g     g       ugga g    --    -      ag 
       ggc c   g ggcgc cgcggcc    g ggcg  gggc ggacgc  a
       ||| |   | ||||| |||||||    | ||||  |||| ||||||   
       ccg g   U UCGCG GCGUUGG    C UCGC  ucug uuugcg  g
gucgugu   a gga G     A       ---- G    UA    a      cc 

>hsa-mir-640 (-34.90)   [hsa-miR-640:61-81]

------- ug   --cu     a       aa     gaca   ----     c 
       g  acc    gggca guuccug  gauca    cau    cagau c
       |  |||    ||||| |||||||  |||||    |||    ||||| c
       c  ugg    UCCGU CAAGGAC  CUAGU    gua    gucua u
gggguuc gu   caUC     C       --     Acgg   aaau     u 

>hsa-mir-641 (-61.80)   [hsa-miR-641:16-39]

-u      a                    AG            ccucu u 
  ggguga aggaaggAAAGACAUAGGAU  AGUCACCUCugu     g c
  |||||| ||||||||||||||||||||  ||||||||||||     |  
  cccauu uccuuccuuucuguauccug  ucaguggagaua     c c
uc      c                    --            uccau u 

>hsa-mir-642 (-65.40)   [hsa-miR-642:16-37]

------------au             G                      ggu 
              cugaguugggagg UCCCUCUCCAAAUGUGUCUUGg   g
              ||||||||||||| ||||||||||||||||||||||   g
              ggcucaacccucc agggagagguuuacacagaacu   g
uuacuaccgucucc             a                      agg 

>hsa-mir-643 (-45.90)   [hsa-miR-643:61-82]

accaaguga      u                a        a   gg gu 
         uauuca ugucuaccugagcuag auacaagu guu  c  c
         |||||| |||||||||||||||| |||||||| |||  |  u
         guaagu auaGAUGGACUCGAUC UAUGUUCA cag  g  u
----aaaaa      u                G        -   -a ac 

>hsa-mir-644 (-28.80)   [hsa-miR-644:61-79]

uuuuuuuuuaguauuuuu     ag     a       u  ug u      u 
                  ccauc  uguuc uaaggaa gu  c cuguag u
                  |||||  ||||| ||||||| ||  | |||||| u
                  gguag  aCGAG AUUCUUU CG  G GAuauu u
-----------aucccuu     aa     -       -  GU U      c 

>hsa-mir-645 (-42.90)   [hsa-miR-645:61-79]

caguuccuaac    c    ac             u   cu         
           aggc ucag  caguaccggucug ggc  ggggguug 
           |||| ||||  ||||||||||||| |||  ||||||| a
           uucg AGUC  GUCAUGGUCGGAU Ucg  uccccagg 
-gagagaaaaa    u    --             C   --         

>hsa-mir-646 (-34.20)   [hsa-miR-646:61-79]

ga   -g      ---   ag     u    acacc      -  a    ug 
  uca  gagucu   gcc  uggag cagc     ugcuuu uc ccug  a
  |||  ||||||   |||  ||||| ||||     |||||| || ||||   
  ggu  cucgga   CGG  GUCUC GUCG     ACGAAg ag ggac  u
-c   ga      cuc   -A     C    -----      g  a    cc 

>hsa-mir-647 (-42.80)   [hsa-miR-647:16-36]

---   aag g ug    G  G   C  U A        a     aggaa  c 
   agg   u u  gccu UG CUG AC C CUUCCUUC gcccc     gc u
   |||   | |  |||| || ||| || | |||||||| |||||     ||  
   ucc   g g  cggg ac gac ug g gagggagg cgggg     ug u
cag   --g g gu    -  g   -  - -        a     ---gc  g 

>hsa-mir-648 (-39.70)   [hsa-miR-648:16-34]

au   aga   c   ----      G    ----     GG  -g     gg 
  cac   cac ucc    AAGUGU CAGG    GCACU  Ug  gggcc  g
  |||   ||| |||    |||||| ||||    |||||  ||  |||||   
  gug   gug agg    uucacg gucc    cguga  gc  cccgg  g
--   gga   a   cuga      -    agga     aa  ga     ac 

>hsa-mir-649 (-27.00)   [hsa-miR-649:61-82]

ggcc    c      u  --        u      uu    gaaa     c 
    uagc aaauac gu  auuuuuga cgacau  gguu    aauau u
    |||| |||||| ||  |||||||| ||||||  ||||    |||||  
    gucg uuugug ca  UGAGAACU GUUGUG  CCAA    uuaug a
----    u      u  cC        U      -U    Auga     u 

>hsa-mir-650 (-36.00)   [hsa-miR-650:16-36]

-----ca     ----------     cuc      C    -CU      A   ca 
       gugcu          ggggu   AGGAGG AGCG   CUCAGG Cgu  c
       |||||          |||||   |||||| ||||   |||||| |||  c
       cacgg          uccca   uccucc ucgu   gggucc gua  a
uagugga     gacucacucc     --c      -    cuc      g   cc 

>hsa-mir-651 (-34.50)   [hsa-miR-651:16-37]

---------aau  a   c              A    GA       ucaaa 
            cu uca ugcuuUUUAGGAUA GCUU  CUUUUGu     u
            || ||| |||||||||||||| ||||  |||||||      
            ga agu acggaaaauccuau ugaa  gaaaacg     a
uuuguguaauuu  c   a              g    ag       uaaaa 

>hsa-mir-652 (-55.20)   [hsa-miR-652:61-81]

acgaau  cua                  gagag           ca  g 
      gg   ugcacugcacaacccuag     ggugccauuca  ua a
      ||   ||||||||||||||||||     |||||||||||  || c
      cc   acgugacGUGUUGGGAUC     CCGCGGUAAgu  au u
-cacau  aac                  ----A           ua  a 

>hsa-mir-548d-1 (-48.20)   [hsa-miR-548d-5p:25-46] [hsa-miR-548d-3p:61-82]

aaacaaguua      g            U                uguaa 
          uauuag uuggugcAAAAG AAUUGUGGUUUUUGCC     a
          |||||| |||||||||||| ||||||||||||||||      
          auaauc gaccaCGUUUUC UUGACACCAAAAACgg     a
-------gaa      a            U                uaaug 

>hsa-mir-661 (-49.30)   [hsa-miR-661:51-74]

ggaga    gu   g gg  -  g         u   -   u   uuc 
     ggcu  gcu u  gg ca gcgcaggcc gag ccc ggu   g
     ||||  ||| |  || || ||||||||| ||| ||| |||    
     ucgg  ugg g  uc gU CGCGUCCGG CUC GGG CCG   g
-----    --   g uu  a  G         U   U   U   Ucg 

>hsa-mir-662 (-45.50)   [hsa-miR-662:61-81]

  ugu  a        a  ca    c     g     u    -g   g 
gc   ug ggcugcgc gc  ggcc ugacg ugggg ggcu  cgg c
||   || |||||||| ||  |||| ||||| ||||| ||||  ||| c
cg   gc cugacgcG CG  CCGG GUUGC ACCCU cugg  guc u
  -uu  a        A  AC    U     -     -    aa   u 

>hsa-mir-548d-2 (-56.90)   [hsa-miR-548d-5p:25-46] [hsa-miR-548d-3p:61-82]

gagagggaagau                 U                    a 
            uuagguuggugcAAAAG AAUUGUGGUUUUUGCCauug a
            ||||||||||||||||| ||||||||||||||||||||  
            aauccaaccaCGUUUUC UUGACACCAAAAACgguaau a
-------aaaau                 U                    g 

>hsa-mir-663 (-50.20)   [hsa-miR-663:15-36]

-ccuu    c   -     -C  G   -        --     c   ug 
     ccgg guc ccAGG  GG GCG CCGCGGGA  CCGCc ucg  u
     |||| ||| |||||  || ||| ||||||||  ||||| |||   
     ggcc cgg ggucc  uu ugc ggcgcccu  ggugg ggu  c
guacc    -   u     uu  g   c        ag     c   gu 

>hsa-mir-449b (-35.60)   [hsa-miR-449b:16-37] [hsa-miR-449b*:55-76]

---------uga  u   u     A     U   UU   A C        u  gu 
            cc gaa caggu GGCAG GUA  GUU G UGGCugcu gg  c
            || ||| ||||| ||||| |||  ||| | |||||||| ||   
            gg cuu guUCA CCGUC CAU  CAA C ACCGACga cu  a
ucuucuuaaaua  u   c     -     C   --   - -        -  ga 

>hsa-mir-653 (-32.82)   [hsa-miR-653:13-33]

-----------u      cuu              U     C     cagcu 
            ucauuc   caGUGUUGAAACAA CUCUA UGaac     u
            ||||||   |||||||||||||| ||||| |||||     c
            aguaag   guuauaacuuuguu gaggu acuug     a
cgaagguagaau      aac              u     c     aacaa 

>hsa-mir-411 (-30.70)   [hsa-miR-411:16-36] [hsa-miR-411*:51-72]

--------------       ug   a a    A      A A       - uuu 
              ugguacu  gag g UAGU GACCGU U GCGUACG c   a
              |||||||  ||| | |||| |||||| | ||||||| |   u
              acuauga  cuc C AUCA CUGGCA A UGUAUgc g   c
gagccccuaccuaa       --   C A    C      C A       a ugu 

>hsa-mir-654 (-29.60)   [hsa-miR-654-5p:16-37] [hsa-miR-654-3p:51-72]

    aagugg    a      G C     A      - -  a 
gggu      aaag UGGUGG C GCAGA CAUGUG C ug g
||||      |||| |||||| | ||||| |||||| | ||  
cccg      uUUC ACUACC G CGUCU GUAUac g gc u
    --aaga    C      A U     -      c u  u 

>hsa-mir-655 (-35.10)   [hsa-miR-655:61-82]

aacuaugcaag      ug           u      ua      cuuca 
           gauauu  aggagagguua ccgugu  uguucg     u
           ||||||  ||||||||||| ||||||  ||||||      
           cuauaa  uUUUCUCCAAU GGUACA  AUAagu     u
-----cucaga      gu           U      UA      acuac 

>hsa-mir-656 (-23.70)   [hsa-miR-656:43-63]

----------cu    u      c     ag       cuu  u 
            gaaa agguug cugug  guguuca   uc a
            |||| |||||| |||||  |||||||   || u
            cuuU UCCAAC GACAU  UAUAAgu   ag a
cuaagcuauagc    C      U     AU       ---  u 

>hsa-mir-549 (-53.20)   [hsa-miR-549:61-81]

agacaugcaacucaaga                                ucu 
                 auauauugagagcucauccauaguugucacug   c
                 ||||||||||||||||||||||||||||||||    
                 uauauaauUCUCGAGUAGGUAUCAACAGUgac   a
----------cggaccc                                uaa 

>hsa-mir-657 (-47.80)   [hsa-miR-657:61-83]

guguaguagagcua        --   u        agcguggaccgguccgggu 
              ggaggaga  ggg ccuggaga                   g
              ||||||||  ||| ||||||||                   g
              ucuccucu  ccc GGAUCUCU                   g
-------------g        ua   c        CCCACUCUUGGACGGccuu 

>hsa-mir-658 (-42.00)   [hsa-miR-658:61-85]

g    g  g   - g --uu       --  g   gc     --agc   c  a 
 cucg uu ccg u g    gcgggcc  cu ccc  ccgcc     ucg ug c
 |||| || ||| | |    |||||||  || |||  |||||     ||| ||  
 gagc aa ggc g c    UGCCUGG  GA GGG  GGCGG     agc ac a
g    -  g   u g UGGU       AU  A   -A     gacuc   -  g 

>hsa-mir-659 (-55.00)   [hsa-miR-659:61-82]

uaccgacccuc   uug   ca                         uc 
           gau   guu  ggaccuucccugaaccaaggaagag  a
           |||   |||  |||||||||||||||||||||||||  c
           cug   caA  CCUGGGAGGGACUUGGUUCcuucuc  a
----gguacuc   uaa   CC                         ug 

>hsa-mir-660 (-33.10)   [hsa-miR-660:16-37]

----------cu    c      -caUAC    U      C    U   gaau 
            gcuc uucucc      CCAU GCAUAU GGAG UGu    u
            |||| ||||||      |||| |||||| |||| |||    c
            cgag gggagg      ggua cgugug ccuc aca    u
gugcuacuguuc    u      acauua    -      u    c   aaac 

>hsa-mir-421 (-35.20)   [hsa-miR-421:48-70]

----g    uu      -    uua            a   aaa 
     caca  guaggc cuca   aauguuuguuga uga   a
     ||||  |||||| ||||   |||||||||||| |||   a
     gugu  cgucCG GGGU   UUACAGACAACU Acu   u
cucua    cu      C    UAA            -   aag 

>hsa-mir-542 (-35.90)   [hsa-miR-542-5p:16-38] [hsa-miR-542-3p:53-74]

----------caga        auc    GG    UCA         -A   c 
              ucucagac   UCGG  AUCA   UGUCACGAG  uac a
              ||||||||   ||||  ||||   |||||||||  |||  
              agggucug   AGUC  UAGU   ACAGUGUuc  gug g
acuucuacucaccg        gAA    AA    UAG         ac   u 

>hcmv-mir-US4 (-44.00)   [hcmv-miR-US4:8-29]

            U   C   C  G   A    -     - ga 
cgugucgCGACA GGA GUG AG GGG Uguc ugucg c  u
|||||||||||| ||| ||| || ||| |||| ||||| |   
guacagcgcugu ucu cac uc ccc acag guagu g  a
            c   c   a  g   g    u     u ag 

>hcmv-mir-UL70 (-37.60)   [hcmv-miR-UL70-5p:4-24] [hcmv-miR-UL70-3p:45-64]

        C      U     -AGA  -    a 
gguUGCGU UCGGCC CGUCC    cu ggcg u
|||||||| |||||| |||||    || |||| g
ccGGCGCG GGUCGG GUAGG    ga ccgc a
        C      -     GGga  g    g 

>sv40-mir-S1 (-35.80)   [sv40-miR-S1-5p:19-40] [sv40-miR-S1-3p:57-76]

u     gac  u       GA     C      GA  C    gac 
 gaaca   ug gagggcU  GGGGC UGAAAU  GC UUga   u
 |||||   || |||||||  ||||| ||||||  || ||||   g
 cuugu   ac cuucUGA  UCCCG ACUUUG  CG aacu   u
u     ---  -       -G     U      UC  u    aag 

>dre-mir-34b (-36.70)   [dre-miR-34b:13-35]

--g      guc   A        U     C       --   a 
   ggguug   ugU GGCAGUGU GUUAG UGAUUGu  uuc u
   ||||||   ||| |||||||| ||||| |||||||  |||  
   uccaac   aca ccgucaua caauc acuaaua  aag a
aca      aac   a        c     -       uc   u 

>dre-mir-31 (-34.10)   [dre-miR-31:9-29]

ga           G   UU        -U  ua  g 
  agagauGGCAA AUG  GGCAUAGC  Gu  au u
  ||||||||||| |||  ||||||||  ||  ||  
  ucuuuaccguu uac  ccguaucg  cg  ua u
-g           a   cu        uc  gg  u 

>dre-mir-135a (-33.40)   [dre-miR-135a:16-38]

-----------aca    u     c   -      UU             a g ga 
              gcug cgugu uUA UGGCUU  UAUUCCUAUGUGA g u  a
              |||| ||||| ||| ||||||  ||||||||||||| | |   
              ugac gcaca aau accgaa  auagggauguacu c g  c
uuucgacuaaagac    -     -   c      -c             - g aa 

>dre-mir-139 (-34.70)   [dre-miR-139:7-24]

cug       -      A   G        -   u 
   uauUCUA CAGUGC UGU UCUccagu guu c
   ||||||| |||||| ||| |||||||| ||| u
   auaaggu gucgcg acg agggguca cgg a
-ca       u      -   g        g   u 

>gga-mir-9-1 (-34.00)   [gga-miR-9:16-38] [gga-miR-9*:54-74]

uu    u       c C       A       G     g   a 
  gggu gguuuuu U UUUGGUU UCUAGCU UAUGA ugu u
  |||| ||||||| | ||||||| ||||||| ||||| ||| g
  cucg ccaaaaa G AAGCCAA AGAUCGA AUacu aua u
cg    c       U U       G       A     -   g 

>gga-mir-146b (-44.10)   [gga-miR-146b:19-40] [gga-miR-146b*:59-78]

----   ------cug      ug   uUG          U       -    aaagc 
    gga         gcugcu  gcu   AGAACUGAAU CCAUAGG CGuu     a
    |||         ||||||  |||   |||||||||| ||||||| ||||      
    ccu         cgacgg  uga   UCUUGACUUA GGUAUCC guaa     u
ccga   ccaaauaaa      gu   -CG          -       C    aaacc 

>gga-mir-147-1 (-22.50)   [gga-miR-147:45-64]

aauc   ug   u  c        aaacuugacu    a 
    uag  gaa ca uucugcac          acug a
    |||  ||| || ||||||||          ||||  
    auC  CUU GU AAGGCGUG          UGac a
uuac   GU   C  A        ----------    u 

>gga-mir-147-2 (-22.50)   [gga-miR-147:45-64]

aauc   ug   u  c        aaacuugacu    a 
    uag  gaa ca uucugcac          acug a
    |||  ||| || ||||||||          ||||  
    auC  CUU GU AAGGCGUG          UGac a
uuac   GU   C  A        ----------    u 

>gga-mir-193b (-32.10)   [gga-miR-193b:51-74]

g  gu -      u    gu    g    g  a  -----   u 
 ug  u ccagag cggg  uuug gggc ag ug     agc u
 ||  | |||||| ||||  |||| |||| || ||     |||  
 ac  g gguUUU GCCC  AAAC CCCG UC Ac     uug a
-  ug u      C    UG    A    G  A  cuauu   u 

>gga-mir-202 (-40.50)   [gga-miR-202*:15-36] [gga-miR-202:52-73]

--g   -        u           -A   A       g   gu 
   cuc guuguucc uUUUCCUAUGC  UAU CUUCUUU aga  u
   ||| |||||||| |||||||||||  ||| ||||||| |||   
   gag cagcgggg AAAAGGGUACG  AUA GGAGAaa ucu  u
aug   u        u           AG   C       -   ag 

>gga-mir-302b (-30.32)   [gga-miR-302b*:8-30] [gga-miR-302b:46-68]

cc        UU          UG   U  gugau 
  cuuuuACU  AACAUGGAGG  CUU CU     u
  ||||||||  ||||||||||  ||| ||     u
  ggaGAUGA  UUGUACCUUC  GAA ga     u
-u        UU          GU   U  aaaca 

>gga-mir-302c (-33.00)   [gga-miR-302c*:8-29] [gga-miR-302c:40-62]

  u     UU             C    Gcc 
cc ccgcU  AACAUGGAGGUAC UGCU   u
|| |||||  ||||||||||||| ||||   a
gg GGUGA  UUGUACCUUCGUG AUga   c
  u     CU             A    aaa 

>gga-mir-302d (-35.52)   [gga-miR-302d:44-66]

  u     uu                  ggaca 
cc caacu  aacauggagguacuugcu     c
|| |||||  ||||||||||||||||||     c
gg GUUGA  UUGUACCUUCGUGAAUga     u
  u     UU                  aaaag 

>gga-mir-365-1 (-37.90)   [gga-miR-365:54-75]

c      aa        ac           ----   -    uu 
 gcaggg  aaugaggg  uuuugggggca    gau gugu  c
 ||||||  ||||||||  |||||||||||    ||| ||||  c
 cguucu  uUAUUCCU  AAAAUCCCCGU    cua caca  a
a      cg        -A           AAUa   u    uu 

>gga-mir-365-2 (-38.50)   [gga-miR-365:57-78]

--   ---a       a        ac   c       -----    u   u 
  ggc    gcaagaa aaugaggg  uuu aggggca     gcug guu u
  |||    ||||||| ||||||||  ||| |||||||     |||| ||| a
  cug    cguucuu uUAUUCCU  AAA UCCCCGU     ugac caa c
aa   guaa       g        AA   -       AAUac    c   u 

>gga-mir-375 (-30.70)   [gga-miR-375:41-62]

-       u      cc   u       c ga 
 ccuggcg cgagcc  acg gcaagac u  c
 ||||||| ||||||  ||| ||||||| |  c
 ggAUUGC GCUCGG  UGC UGUUUug a  u
c       -      CU   U       c ag 

>gga-mir-383 (-27.60)   [gga-miR-383:7-28]

   -c  A      AA    A        -  g   a 
cuc  uc GAUCAG  GGUG UUGUGGCU uu ggu a
|||  || ||||||  |||| |||||||| || |||  
gag  ag cugguc  ucac gacaccga ga uua a
   aa  a      cg    -        c  g   u 

>gga-mir-455 (-42.20)   [gga-miR-455-5p:16-37] [gga-miR-455-3p:53-74]

u  c   u ug  g          U      A   C   gaa 
 cc ugg g  ag gUAUGUGCCC UGGACU CAU Gug   g
 || ||| |  || |||||||||| |||||| ||| |||    
 gg acu c  uC CAUAUACGGG ACCUGA GUa cac   c
u  a   c gu  A          U      C   c   gac 

>gga-mir-489 (-38.60)   [gga-miR-489:51-73]

 ug ug c    ug             c      ua     a 
g  g  g uugg  gucguauguauga gucauu  cuugg c
|  |  | ||||  ||||||||||||| ||||||  |||||  
c  c  c aauC  CGGCAUGUAUACU CAGUGA  ggauu u
 gu gu a    GU             A      --     u 

>gga-mir-490 (-40.50)   [gga-miR-490:57-78]

aa  uc           c      --         g   caag   a 
  gu  augguucgaca caugga  ucuccaggu ggu    auu u
  ||  ||||||||||| ||||||  ||||||||| |||    ||| a
  ca  ugucgaguuGU GUACCU  GGAGGUCCA Cca    uag g
aa  cu           C      CA         A   --ca   a 

>gga-mir-499 (-38.00)   [gga-miR-499:17-39]

uu     -   c  c   UA       U           Ga   u 
  ugagg gag gg agU  AGACUUG AGUGAUGUUUA  uaa g
  ||||| ||| || |||  ||||||| |||||||||||  |||  
  acucc cuc uc ucg  ucugaau ucacuacaagu  auu u
uu     u   u  a   ug       u           ac   a 

>gga-mir-211 (-41.70)   [gga-miR-211:10-31]

      a         UG  A     U    --ga    
ccugug gcUUCCCUU  UC UCCUA GCCU    gcg 
|||||| |||||||||  || ||||| ||||    || a
gggcac cggagggaa  gg agggu cgga    cgu 
      c         gu  c     -    gguc    

>gga-mir-367 (-23.00)   [gga-miR-367:47-67]

agg   a            ca     c    uugua 
   cua uacuguugcuaa  ugcaa ucug     u
   ||| ||||||||||||  ||||| ||||      
   ggu GUGGUAACGAUU  ACGUU Aggu     a
-ca   a            UC     A    uaaaa 

>gga-mir-466 (-21.10)   [gga-miR-466:47-69]

a     c  a    aca                u 
 guuuu ug gugu   uauauguauguaugua a
 ||||| || ||||   ||||||||||||||||  
 CAGAA AC CACA   AUAUAUAuauauauau u
-     U  A    CAC                a 

>gga-mir-429 (-30.70)   [gga-miR-429:52-73]

g  -   u     - u  c          aa       cu  cu 
 cc ugc gauug c gu uuaccaggca  guuagau  ag  a
 || ||| ||||| | || ||||||||||  |||||||  ||   
 gg acg cuaac G CG AAUGGUCUGU  UAAUcug  uc  u
-  u   -     U C  U          CA       --  uu 

>gga-mir-449 (-40.10)   [gga-miR-449:16-36]

c      c  ug  g      -  UA         --  ug a 
 ugugug gg  gg UGGCAG UG  UGUUAGCUG  GU  a a
 |||||| ||  || |||||| ||  |||||||||  ||  | c
 auacac uc  cc aucguu ac  acaaucgac  ca  u u
c      c  gu  a      g  gc         ua  gu c 

>mmu-mir-302b (-24.60)   [mmu-miR-302b*:11-33] [mmu-miR-302b:48-70]

guucc    a   UU         AU    UCUgu   au 
     cuuc ACU  AACAUGGGA  GCUU     cuc  c
     |||| |||  |||||||||  ||||     |||   
     gaaG UGA  UUGUACCUU  UGAA     gag  g
----u    A   UU         CG    ----U   aa 

>mmu-mir-302c (-28.40)   [mmu-miR-302c*:6-27] [mmu-miR-302c:44-65]

    uG  UU         U   C    -g  u 
ccuc  CU  AACAUGGGG UAC UGCu  ug u
||||  ||  ||||||||| ||| ||||  || a
gggG  GA  UUGUACCUU GUG Acga  ac a
    GU  CU         C   A    aa  a 

>mmu-mir-302d (-27.90)   [mmu-miR-302d:42-64]

  uu     u                cug gca 
cc  uacuu aacauggaggcacuug   u   u
||  ||||| ||||||||||||||||   |    
gg  GUGAG UUGUACCUUCGUGAAU   a   u
  -U     U                -aa aau 

>rno-mir-378 (-38.80)   [rno-miR-378*:4-25] [rno-miR-378:42-62]

-  g  C              UGU      ccu 
 gg CU CUGACUCCAGGUCC   GUguua   c
 || || ||||||||||||||   ||||||    
 cc GA GACUGAGGUUCAGG   CAcgau   g
u  G  A              --U      aaa 

>rno-mir-505 (-33.30)   [rno-miR-505:43-62]

  u           g    a        -u  g 
ag gggggagccag aagu uugauguu  cu c
|| ||||||||||| |||| ||||||||  ||  
uc cuCCUUUGGUC UUCA AACUGcga  gg c
  u           G    C        uu  a 

>rno-mir-499 (-26.10)   [rno-miR-499:5-25]

  u  UA        A          g uccu 
gc gU  AGACUUGC GUGAUGUUUa c    c
|| ||  |||||||| |||||||||| |     
cg cg  ucugaacg cacuacaagu g    u
  u  ug        a          - uacc 

>rno-mir-664-1 (-27.20)   [rno-miR-664:38-59]

cu         aaaa  u         aa 
  ggcugggga    ga uggauagaa  c
  |||||||||    || |||||||||  a
  CCGACCCCU    UU ACUUAUcuu  u
AU         --CA  U         au 

>rno-mir-664-2 (-28.50)   [rno-miR-664:38-59]

cu         aaa   u         aa 
  ggcugggga   uga uggauagaa  c
  |||||||||   ||| |||||||||  a
  CCGACCCCU   AUU ACUUAUcuu  u
AU         --C   U         au 

>rno-mir-497 (-28.20)   [rno-miR-497:2-23]

-------cC    G    C         U  --   ac 
         AGCA CACA UGUGGUUUG Ac  ggc  u
         |||| |||| ||||||||| ||  |||   
         uugu gugu acaccaaac ug  ccg  g
ggagcgaga    g    c         c  ca   gu 

>ebv-mir-BART3 (-40.70)   [ebv-miR-BART3*:12-32] [ebv-miR-BART3:49-70]

         ga    A   -      U       uaaau 
ccuuuggug  ACCU GUG UUAGUG UGUGCUg     a
|||||||||  |||| ||| |||||| |||||||      
ggaggccac  UGGA CAC GAUCAC ACGCgac     a
         UG    C   U      C       cugug 

>ebv-mir-BART4 (-38.90)   [ebv-miR-BART4:9-30] [ebv-miR-BART4*:47-69]

u       G     A   -   -         --   aa 
 uuggugg ACCUG UGC UGC UGGUGUGCU  gua  u
 ||||||| ||||| ||| ||| |||||||||  |||   
 gaccacU UGGAC ACG AUG ACUACACga  cgu  a
g       G     C   G   C         uc   ga 

>ebv-mir-BART5 (-38.60)   [ebv-miR-BART5:15-38] [ebv-miR-BART5*:57-74]

  uc    g   cuCA      AU     U        ac  a  g 
gc  ugug cac    AGGUGA  AUAGC GCCCAUCG  gu uc c
||  |||| |||    ||||||  ||||| ||||||||  || ||  
ug  acgc gug    UCCACU  UGUCG CGGGUGgc  ca ag u
  ga    a   -aaa      --     C        --  a  g 

>ebv-mir-BART6 (-44.30)   [ebv-miR-BART6-5p:18-39] [ebv-miR-BART6-3p:57-78]

u a     uugg                 A    AUA  c     u 
 g ccuug    uacuuUAAGGUUGGUCC AUCC   GG uuuuu u
 | |||||    ||||||||||||||||| ||||   || |||||  
 c ggaac    augAGAUUCCGAUCAGG UAGG   Cc aaaag g
a c     -uca                 C    -GG  c     u 

>ebv-mir-BART7 (-40.10)   [ebv-miR-BART7*:15-36] [ebv-miR-BART7:51-72]

   -    uc   a        -  U        AA  a  cu 
ucc agug  cug uCCUGGAC CU GACUAUGA  CA uu  a
||| ||||  ||| |||||||| || ||||||||  || ||   
agg ucac  gac GGGACCUG GA CUGAUACU  gu aa  a
   c    gu   a        U  C        AC  a  aa 

>ebv-mir-BART8 (-31.90)   [ebv-miR-BART8:14-35] [ebv-miR-BART8*:49-71]

     u     a      UU  C        -    auga 
ugggu cacug uUACGG  UC UAGAUUGU ACAG    a
||||| ||||| ||||||  || |||||||| ||||    c
auucg gugac GAUGCU  GG AUCUAACA UGuc    u
     u     A      GG  U        C    aaga 

>ebv-mir-BART9 (-33.90)   [ebv-miR-BART9*:14-35] [ebv-miR-BART9:52-74]

    --u      ug   U      -    U  GAA    uaac 
cagc   guuguu  UAC GGACCC UGAA UG   ACag    u
||||   ||||||  ||| |||||| |||| ||   ||||    u
gucg   caacag  AUG CCUGGG ACUU AC   Uguc    g
    uau      UG   C      U    C  -AA    uuag 

>ebv-mir-BART10 (-49.90)   [ebv-miR-BART10*:18-39] [ebv-miR-BART10:53-75]

    -      uc   g     C    U     C      uauu 
caga ggagug  ccg gGCCA CUCU UGGUU UGUACA    u
|||| ||||||  ||| ||||| |||| ||||| ||||||    u
gucu ccucac  ggU UCGGU GAGG ACCAA ACAUgu    g
    a      gu   G     U    U     U      uauu 

>ebv-mir-BART11 (-43.50)   [ebv-miR-BART11-5p:14-37] [ebv-miR-BART11-3p:52-72]

    --u        U   A          C  UA     g     
ggcu   cuguuggg CAG CAGUUUGGUG GC  GUUGu ugcu 
||||   |||||||| ||| |||||||||| ||  ||||| ||| u
ccgg   gacgauuC GUC GUCGGACCAC CG  CAacg acga 
    ugu        C   A          A  --     -     

>ebv-mir-BART12 (-38.50)   [ebv-miR-BART12:49-70]

   -   a     c   -    cau      c      auu 
cug gug ccuaa acc cgcc   caccac ggacag   c
||| ||| ||||| ||| ||||   |||||| ||||||   u
gac cau ggguu UGG GUGG   GUGGUG CCUguu   g
   g   g     U   U    UUU      U      caa 

>ebv-mir-BART13 (-31.20)   [ebv-miR-BART13*:15-36] [ebv-miR-BART13:52-74]

u       c   a  A   G   G    -UCG      - g u 
 ugggcac ucg uA CCG CUC UGGC    UACAGa c a u
 ||||||| ||| || ||| ||| ||||    |||||| | | g
 auuugug agc GU GGC GGG ACCG    AUGUcu g u u
g       u   A  C   A   -    UUCA      c g u 

>ebv-mir-BART14 (-36.20)   [ebv-miR-BART14*:14-35] [ebv-miR-BART14:48-69]

    -g   - -    UA      -     C -       uaau 
cagg  gug g ccgg  CCCUAC GCUGC G AUUUACA    a
||||  ||| | ||||  |||||| ||||| | |||||||     
gucc  cgc c gguc  GGGAUG UGACG C UAAAUgu    u
    ag   g a    UA      A     U G       uaaa 

>rlcv-mir-rL1-1 (-36.90)   [rlcv-miR-rL1-1:15-36]

    gg  c   a       GA    C          cc   c 
ggcc  cu cuu uUAACCU  UCAG CCCGGGGUUg  ugu u
||||  || ||| |||||||  |||| ||||||||||  |||  
cugg  ga gaa aguugga  aguc gggccucaau  acg u
    --  a   c       ga    c          -c   a 

>rlcv-mir-rL1-2 (-33.10)   [rlcv-miR-rL1-2:48-70]

   cc     uu       g  a           ugau 
gcc  cacuu  aaauucu cc cagaagauagc    a
|||  |||||  ||||||| || |||||||||||    c
cgg  gugaA  UUUAAGG GG GUUUUCUAUug    u
   uu     CC       G  C           uagc 

>rlcv-mir-rL1-3 (-52.80)   [rlcv-miR-rL1-3:53-75]

--cugg  c     g             c   -     ---   g u 
      gu cucgg gggcgguggagac gcg ggugc   ggu a u
      || ||||| ||||||||||||| ||| |||||   ||| | g
      ca gggcc cUCGUCAUCUCUG CGC CCACG   cca u c
ggucug  u     g             C   U     Cuc   g u 

>rlcv-mir-rL1-4 (-41.40)   [rlcv-miR-rL1-4-5p:23-43] [rlcv-miR-rL1-4-3p:58-79]

   au  uuuaac  ug  -          -A      C      gugag 
gag  gc      cu  gg gggACCUAGU  AUUGUG GGUGUU     u
|||  ||      ||  || ||||||||||  |||||| ||||||      
cuc  cg      gg  cc cUCUGGAUCA  UAGCAC CCACaa     g
   --  uuccuc  gu  a          CC      A      agauu 

>rlcv-mir-rL1-5 (-38.50)   [rlcv-miR-rL1-5-5p:10-31] [rlcv-miR-rL1-5-3p:48-69]

        gA        -CC    A      -  g a 
cuucggug  ACCUAGUG   GGUG UGUGCU gu g u
||||||||  ||||||||   |||| |||||| || | a
ggggccac  UGGAUCAC   UCAC ACGCga cg c g
        UG        UUU    C      u  a g 

>rlcv-mir-rL1-6 (-41.30)   [rlcv-miR-rL1-6-5p:13-35] [rlcv-miR-rL1-6:48-69]

c          uUU       -    AC        auua 
 ccuugguggg   UAGUGGA AGUG  GUGCUGUG    g
 ||||||||||   ||||||| ||||  ||||||||     
 gggaccacuC   AUCACCU UCGC  CACGAUac    g
-          UGU       A    --        ccau 

>rlcv-mir-rL1-7 (-34.60)   [rlcv-miR-rL1-7:14-35]

       c g  uC    U     UC          ag   cu 
ccgugug c cu  GAGG AAACA  GGCUUACUGa  ucu  u
||||||| | ||  |||| |||||  ||||||||||  |||  a
gguacac g ga  cucc uuugu  ccgggugacu  gga  g
       a a  ca    c     --          --   au 

>rlcv-mir-rL1-8 (-43.50)   [rlcv-miR-rL1-8:15-38]

 ug     g   c   A       AUA  U        aug   g 
u  cugcg cac gUA GGUGAAU   GC GCCCAUUG   ucu u
|  ||||| ||| ||| |||||||   || ||||||||   |||  
a  gacgc gug cau ccacuug   cg cggguggc   aga u
 gu     a   a   -       --a  c        cca   u 

>rlcv-mir-rL1-9 (-50.40)   [rlcv-miR-rL1-9:54-76]

        aa  -     a        -    -  cc a    au 
gccugcgg  cc cuaag ggggggcc ugca cg  g gguu  u
||||||||  || ||||| |||||||| |||| ||  | ||||  u
cggacguc  gg GAUUC CCCCCUGG ACGU GC  c ccga  c
        -a  U     -        U    A  Uu -    cc 

>rlcv-mir-rL1-10 (-34.00)   [rlcv-miR-rL1-10:51-72]

   - u  u   ac        u   c      u   uaaug 
gug g cc cug  aucggguu ccg uguacu gca     a
||| | || |||  |||||||| ||| |||||| |||      
cac c gg gac  UAGUCCAG GGC GCGUGA Ugu     g
   u u  c   GA        U   C      -   uucaa 

>rlcv-mir-rL1-11 (-52.90)   [rlcv-miR-rL1-11:47-68]

-  g     -                a     g   uggc 
 gg gccuu gccuccguauccuauc agugu acg    u
 || ||||| |||||||||||||||| ||||| |||     
 cc cggaa ugGGGGCAUAGGAUAG UCACA Ugc    u
u  g     a                C     G   uugu 

>rlcv-mir-rL1-12 (-45.50)   [rlcv-miR-rL1-12-5p:14-35] [rlcv-miR-rL1-12-3p:54-75]

u     u      -  A    A        A  --       ua 
 caggg acgcuc AG CCAG CCAUGCAC GU  GGGcgau  a
 ||||| |||||| || |||| |||||||| ||  |||||||   
 guccu ugugAG UC GGUC GGUACGUG CA  cucguua  g
g     -      A  -    A        G  Au       ca 

>rlcv-mir-rL1-13 (-44.90)   [rlcv-miR-rL1-13:49-70]

    -   c   a          g        aa     c 
cccg ugu uug uccugggcau ggcuauga  caguu u
|||| ||| ||| |||||||||| ||||||||  ||||| a
gggc acg ggc GGGACCUGUG CCGAUACU  guuaa a
    c   u   A          A        AG     c 

>rlcv-mir-rL1-14 (-48.80)   [rlcv-miR-rL1-14-5p:15-37] [rlcv-miR-rL1-14-3p:53-73]

   -    gg        GA          C  UU    u  uu 
gcc cucc  cugggUCG  CGGUCUGGUG GC  GAUg gu  u
||| ||||  ||||||||  |||||||||| ||  |||| ||  c
cgg gagg  gacuCAGC  GUCGGACUAC CG  CUac ca  g
   u    -a        AA          A  --    -  ug 

>rlcv-mir-rL1-15 (-44.90)   [rlcv-miR-rL1-15:58-81]

uuccuggag   -   ac        -     -uu   g        gg    
         ccg gug  cugagacc caccc   cuc acggggca  ugu 
         ||| |||  |||||||| |||||   ||| ||||||||  || u
         ggc cac  gauUUUGG GUGGG   GAG UGUCCUgu  aua 
------gag   g   gu        U     UAU   A        ga    

>rlcv-mir-rL1-16 (-32.30)   [rlcv-miR-rL1-16-5p:14-33] [rlcv-miR-rL1-16-3p:48-69]

    -      u a       -    -C     U  ugauu 
gagg gccagu g AGCAGGC AUGU  UUCAU CC     u
|||| |||||| | ||||||| ||||  ||||| ||      
uucc cgguua C UUGUCCG UACA  AAGUA gg     c
    a      u C       G    CA     C  uaguc 

>hsa-mir-758 (-29.40)   [hsa-miR-758:52-73]

-gcc       a    --a    u      aga   c   - uuu 
    uggauac ugag   uggu gaccag   gca acg c   a
    ||||||| ||||   |||| ||||||   ||| ||| |   u
    aucuaug acuc   AUCA CUGGUC   UGU Ugc g   u
cgua       -    CCA    C      CAG   U   c ugu 

>hsa-mir-1264 (-19.16)   [hsa-miR-1264:42-64]

--------    c     -    u        aaagaa 
        aggu cucaa uaag auuuguug      u
        |||| ||||| |||| ||||||||      a
        UCCA GAGUU AUUC UGAACaac      a
guguaUUG    C     U    -        caaaua 

>hsa-mir-671 (-68.10)   [hsa-miR-671-5p:29-51] [hsa-miR-671-3p:68-88]

   ggu aa     ----a    a        A   A      GA           -u   g 
gca   g  cuggc     ggcc ggaagagg GGA GCCCUG  GGGGCUGGAGg  gau g
|||   |  |||||     |||| |||||||| ||| ||||||  |||||||||||  |||  
cgu   c  gaccg     ccgg cuuucuCC CCU CGGGAC  UCUUGGCCUcc  uug a
   ggu gg     agaug    g        A   -      --           uu   u 

>hsa-mir-668 (-33.00)   [hsa-miR-668:43-65]

    a   c   ---        g         a 
ggua gug gcc   ucggguga caugcacuu a
|||| ||| |||   |||||||| ||||||||| u
cCAU CAC CGG   GGCUCACU GUauguggg g
    -   C   CUC        -         u 

>hsa-mir-767 (-44.90)   [hsa-miR-767-5p:27-49] [hsa-miR-767-3p:61-83]

  -uuuu   u  u             U C       UU  C      U    c 
gc     aua ug agguuuuugcuca G ACCAUGG  GU UGAGCA Gcag a
||     ||| || ||||||||||||| | |||||||  || |||||| |||| u
cg     ugu ac uccaaggacgagU U UGGUACC  CA ACUCGU Uguu g
  ucauc   u  u             C U       -C  U      C    c 

>hsa-mir-1224 (-45.00)   [hsa-miR-1224-5p:1-19] [hsa-miR-1224-3p:65-85]

G      CUC         a   u  u  cgccggggccgg 
 UGAGGA   GGGAGGUGG ggg gg gc            g
 ||||||   ||||||||| ||| || ||            c
 ACUCCU   UCCUCCACC Ccc cu cg            g
G      CUC         C   u  u  cucgacuuuguc 

>hsa-mir-320b-1 (-16.30)   [hsa-miR-320b:39-60]

---------------------------------aauuaauc    ucu      uu 
                                         ccuc   uucuag  c
                                         ||||   ||||||   
                                         ggag   gagauc  u
uuaauuaaucaauuaaacaAACGGGAGAGUUGGGUCGAAAA    --u      cu 

>hsa-mir-320c-1 (-34.67)   [hsa-miR-320c:50-69]

u        --aaaaugag        uu       c    cag 
 uugcauua          gccuucuc  cccaguu uucc   a
 ||||||||          ||||||||  ||||||| ||||    
 gauguagu          UGGGAGAG  GGGUCGA AAgg   g
g        aaaaaaaaga        UU       A    acu 

>hsa-mir-1296 (-50.20)   [hsa-miR-1296:16-37]

---a       aacu         C CU        CU   u     a 
    ccuaccu    gggUUAGGG C  GGCUCCAU  CCu uagga a
    |||||||    ||||||||| |  ||||||||  ||| ||||| a
    gggugga    cccaauccc g  ucggggug  ggg gucuu c
uguc       ----         a cu        ag   u     c 

>hsa-mir-1468 (-32.00)   [hsa-miR-1468:13-33]

     gu gu  C         C     C     -u   cau 
ggugg  g  uu UCCGUUUGC UGUUU GCUGa  gug   u
|||||  |  || ||||||||| ||||| |||||  |||   c
cuacc  c  aa agguaaacg auaaa cgacu  uac   a
     ug uu  a         a     a     cu   uca 

>hsa-mir-1323 (-37.60)   [hsa-miR-1323:11-32]

ac   g             A  G         gugg 
  uga guccUCAAAACUG GG GCAUUUUCU    u
  ||| ||||||||||||| || |||||||||    u
  acu uagggguuuugac cc cgugaaagg    u
-a   g             -  a         aaag 

>hsa-mir-1271 (-50.20)   [hsa-miR-1271:15-36]

-ca  -   au             C     A           a 
   cc cag  cagugCUUGGCAC UAGCA GCACUCAguaa u
   || |||  ||||||||||||| ||||| |||||||||||  
   gg guc  guuacggaccgug aucgu cgugaguuguu a
ucg  a   gu             u     c           u 

>hsa-mir-1301 (-45.80)   [hsa-miR-1301:48-71]

--        g           -     - c      -  gu 
  ggauugug ggggucgcucu aggca c gcagca cu  g
  |||||||| ||||||||||| ||||| | |||||| ||  c
  ccugacac CUUCAGUGAGG UCCGU G CGUUgu gg  u
cu        a           G     C A      a  gg 

>hsa-mir-454 (-41.70)   [hsa-miR-454*:24-45] [hsa-miR-454:64-86]

u       ----  --a     uc            ---         ----   --U     g 
 cuguuua    uc   ccaga  cuagaACCCUAU   CAAUAUUGU    CUC   GCugu u
 |||||||    ||   |||||  ||||||||||||   |||||||||    |||   |||||  
 gacgggu    ag   gguuu  gguuuUGGGAUA   GUUAUAACG    gag   ugaua a
g       aaca  aaa     gu            UUC         UGAU   ucu     a 

>hsa-mir-1185-2 (-38.50)   [hsa-miR-1185:15-35]

u       u    -     GA A              a  uga 
 uugguac uaaa gAGAG  U CCCUUUGUAUGUUc cu   u
 ||||||| |||| |||||  | |||||||||||||| ||    
 aacuaug guuu cucuc  a gggggacauauaag gg   u
a       c    a     ag -              c  uaa 

>hsa-mir-449c (-46.40)   [hsa-miR-449c:17-41] [hsa-miR-449c*:57-79]

   --g       u   gU   C      UU               u 
gcu   ggaugug cag  AGG AGUGUA  GCUAGCGGCUGUuaa g
|||   ||||||| |||  ||| ||||||  ||||||||||||||| a
cga   cuuacgu GUC  UCC UCACGU  UGAUCGUUgacaauu u
   aga       U   UC   -      --               u 

>hsa-mir-1283-1 (-39.20)   [hsa-miR-1283:14-35]

--       ua   g   AC     A           g  g c 
  cucaagc  uga UCU  AAAGG AAGCGCUUUCU uu u a
  |||||||  ||| |||  ||||| ||||||||||| || | g
  gaguuug  auu gga  uuucc uucgcgaaaga aa a a
aa       gc   g   gu     c           g  g a 

>hsa-mir-769 (-60.10)   [hsa-miR-769-5p:30-51] [hsa-miR-769-3p:69-91]

gc     u   --  uu   g        c UG       U   U   G    g   ugu 
  cuugg gcu  ga  ccu ggcucuga c  AGACCUC GGG UCU AGCU uga   u
  ||||| |||  ||  ||| |||||||| |  ||||||| ||| ||| |||| |||    
  gaacc ugg  cu  ggg ccgggacU G  UCUGGGG CUC AGG UCga gcu   g
-c     u   gu  cc   g        U GU       C   U   G    -   cuc 

>hsa-mir-766 (-50.80)   [hsa-miR-766:65-86]

  a    cag   -cug    u       ag    aau   u     ucuu   uuu 
gc uccu   gac    ggcu ggguggu  gagg   ugg gcugg    uca   u
|| ||||   |||    |||| |||||||  ||||   ||| |||||    |||   g
cg agga   cug    ccga cccacCG  CUCC   ACC CGACC    Agu   g
  -    -ua   uuaa    c       -A    GAC   C     --UC   uua 

>hsa-mir-320b-2 (-46.30)   [hsa-miR-320b:72-93]

--uguuauuuuuugucuucuaccua        ------g  u   ag        uu     -a       a 
                         agaauucu       uc cuu  gcuuucuc  cccag  uuuccca a
                         ||||||||       || |||  ||||||||  |||||  |||||||  
                         ucuuaaga       ag gaa  CGGGAGAG  GGGUC  AAAgggu g
aagggauagauuaauacagucucug        aaaaaaa  -   AA        UU     GA       u 

>hsa-mir-1185-1 (-35.00)   [hsa-miR-1185:15-35]

u       u    -     GA A              a  uga 
 uugguac ugaa gAGAG  U CCCUUUGUAUGUUc cu   u
 ||||||| |||| |||||  | |||||||||||||| ||    
 aacuaug guuu uucuc  a gggggacauauaag gg   u
a       c    a     ag -              c  uaa 

>hsa-mir-762 (-67.20)   [hsa-miR-762:49-70]

     g   c    u        --  -a      g        
ggccc gcu cggg cucggccc  gu  cagucc gccggcc 
||||| ||| |||| ||||||||  ||  |||||| |||||| a
ccggg cgg gccC GAGCCGGG  CG  GUCGGG cggucgu 
     g   c    -        GC  GG      G        

>hsa-mir-802 (-35.00)   [hsa-miR-802:18-40]

---guu      u     g C   A          A       -  cc 
      cuguua uugca u AGU ACAAAGAUUC UCCUUGU gu  a
      |||||| ||||| | ||| |||||||||| ||||||| ||  u
      gauaau aaugu a uca uguuucuaag aggaaca cg  c
cagguc      u     g u   c          -       a  ua 

>hsa-mir-670 (-44.60)   [hsa-miR-670:20-39]

  uu     ug ac      UC        U     - UG    ug au 
gu  agggg  g  cugauG  CCUGAGUG AUGUG G  aacc  a  u
||  |||||  |  ||||||  |||||||| ||||| |  ||||  |  u
ca  ucccc  u  gacugu  ggacuuac uauac c  uugg  u  g
  cu     gu --      ga        u     u cu    gu cc 

>hsa-mir-1298 (-48.10)   [hsa-miR-1298:18-39]

----agac       u         U    C             ------       ccc 
        gaggagu aagagUUCA UCGG UGUCCAGAUGUAu      ccaagua   u
        ||||||| ||||||||| |||| |||||||||||||      |||||||    
        cuuuuca uuuucaagu aguc acgggucuacaua      gguuuau   g
acucagua       c         c    a             aauaac       ugu 

>hsa-mir-2113 (-39.40)   [hsa-miR-2113:56-76]

u        caa           ua    g        cg   a 
 uuucaaag   ugugugacagg  cagg acaaaucc  uua u
 ||||||||   |||||||||||  |||| ||||||||  ||| a
 aaaguuuc   guaCACUGUCU  GUUC UGUUUAgg  aau a
a        acc           CG    G        ag   g 

>hsa-mir-761 (-44.50)   [hsa-miR-761:7-28]

                      G  A  g 
ggaggaGCAGCAGGGUGAAACU AC CA u
|||||||||||||||||||||| || ||  
ccuccucgucguuucacuuuga ug gu u
                      g  -  c 

>hsa-mir-764 (-41.10)   [hsa-miR-764:11-32]

    ua  ag    G   U    -  U        a   -  g 
aauc  gg  GCAG UGC CACU UG CCUCCUcc ugc uu g
||||  ||  |||| ||| |||| || |||||||| ||| ||  
uuag  cc  uguc acg guga ac ggaggagg acg aa a
    ua  au    a   -    u  c        g   u  a 

>hsa-mir-759 (-32.40)   [hsa-miR-759:24-45]

              cc     u   AG          A   U  Cu 
uaauaaauuaaaug  uaaac gGC  AGUGCAAACA UUU GA  c
||||||||||||||  ||||| |||  |||||||||| ||| ||   
auuguuuaauuuac  auuug ucg  ucacguuugu aaa cu  a
              aa     -   -g          -   u  ag 

>mmu-mir-1224 (-43.20)   [mmu-miR-1224:1-21]

G      CU          ------    u   aucau      c 
 UGAGGA  GGGGAGGUGG      AGgg agc     uagagc a
 ||||||  ||||||||||      |||| |||     ||||||  
 acuccu  cuucuccacc      uccc ucg     gucucg g
g      cu          ccccuc    -   acucu      a 

>mmu-mir-301b (-38.70)   [mmu-miR-301b:55-77]

u   -cu     c g        c    uagguugc    c  ug    g 
 uuc   gcugg u cgggugcu ugac        acua ug  cugu a
 |||   ||||| | |||||||| ||||        |||| ||  |||| g
 aag   cgacc g gucuaCGA ACUG        UGGU AC  GACg a
g   cuc     a g        A    -----UUA    A  GU    a 

>mmu-mir-675 (-56.00)   [mmu-miR-675-5p:15-36] [mmu-miR-675-3p:49-70]

u  --              U    AA     CC      gac 
 gc  ggcccagggacUGG GCGG  AGGGC  ACAGUg   u
 ||  |||||||||||||| ||||  |||||  ||||||   u
 cg  cugggucccUGACU CGCC  UCCCG  UGUCac   g
a  gu              -    AA     UA      aug 

>mmu-mir-744 (-45.50)   [mmu-miR-744:13-34] [mmu-miR-744*:70-91]

       c     GC    C   -   U       gucuuacugacgguu 
ggcuggg aaggU  GGGG UAG GGC AACAGCA               u
||||||| |||||  |||| ||| ||| |||||||               c
cuggcuc uUCCA  CUCC AUC CCG UUGUCgu               c
       a     -A    A   A   -       acacacaccaaaggu 

>mmu-mir-374 (-46.30)   [mmu-miR-374:22-43] [mmu-miR-374*:59-80]

gaa  aau  ---ua      ug AU                     u 
   ga   cc     cucggg  g  AUAAUACAACCUGCUAAGUGu c
   ||   ||     ||||||  |  |||||||||||||||||||||  
   cu   gg     GAGCCU  U  UAUUAUGUUGGacgauucacg u
cug  cuc  uauug      GU AC                     a 

>mmu-mir-216b (-37.90)   [mmu-miR-216b:14-35]

u  g        gA            C  A    --Aug  ac 
 ug cagacugg  AAUCUCUGCAGG AA UGUG     uc  u
 || ||||||||  |||||||||||| || ||||     ||   
 ac gucugacu  uuagagaugucc uu acac     ag  g
a  a        uc            a  c    accaa  aa 

>mmu-mir-592 (-39.90)   [mmu-miR-592:18-40]

u   --a     c     cA        A    C        gu    a 
 gau   uuaug cauga  UUGUGUCA UAUG GAUGAUGU  ugug u
 |||   ||||| |||||  |||||||| |||| ||||||||  ||||  
 cua   aaugc guacu  aacgcagu gugc cuacugcg  acac g
a   cag     a     ac        g    a        --    g 

>mmu-mir-758 (-32.30)   [mmu-miR-758:49-67]

       g     --    u      aga   c   c   a 
ugggugc ugagg  uggu gaccag   gca acg uau u
||||||| |||||  |||| ||||||   ||| ||| |||  
aucuaug acucc  AUCA CUGGUC   UGU Ugc gug u
       -     ca    C      CAG   U   c   u 

>mmu-mir-551b (-43.70)   [mmu-miR-551b:57-77]

    ------     ug   ca          cu     - -aga    gug 
gugc      ucuug  gcc  ugaaaucaag  ugggu g    ccug   c
||||      |||||  |||  ||||||||||  ||||| |    ||||    
uacg      agaac  cgg  ACUUUGGUUC  ACCCA C    ggac   a
    ucagua     gu   uG          AU     G Ggaa    aag 

>mmu-mir-671 (-57.10)   [mmu-miR-671-5p:19-41] [mmu-miR-671-3p:58-78]

u   ----a   ca        A   A      GA           -u   g 
 ggc     ggc  ggaagagg GGA GCCCUG  GGGGCUGGAGg  gau g
 |||     |||  |||||||| ||| ||||||  |||||||||||  |||  
 ccg     ccg  cuuucuCC CCU CGGGAC  UCUUGGCCUcc  uug a
a   agaug   ag        A   -      --           uu   u 

>mmu-mir-668 (-33.30)   [mmu-miR-668:43-66]

    a   u   ---        g            
ggua gug gcc   ucggguga caugcacuuaa 
|||| ||| |||   |||||||| |||||||||| u
CCAU CAC CGG   GGCUCACU GUauguggaug 
    -   C   CUC        -            

>mmu-mir-665 (-44.40)   [mmu-miR-665:55-74]

--agaaca     u   -           u      aucca  a     u 
        ggguc ccu ugaggggccuc gccucu     gg uuaug u
        ||||| ||| ||||||||||| ||||||     || |||||  
        uccgg gga auUCCCUGGAG CGGAGG     CC Aguau u
ucucauuc     c   c           U      ----A  -     u 

>mmu-mir-667 (-40.94)   [mmu-miR-667:56-78]

      --acu     c  u     u ga    -  ag    ccauac 
gugggu     ggccu gg gcugg g  gcag ug  cacg      a
||||||     ||||| || ||||| |  |||| ||  ||||       
cacccg     ccgGA CC CGACC C  CGUC AC  GUgu      u
      gaucc     A  -     - AC    C  -A    cuauau 

>mmu-mir-770 (-59.10)   [mmu-miR-770-5p:19-40] [mmu-miR-770-3p:53-74]

    ----c        c       A      GUCU  G       a    
gcca     cuucugug ccccAGC CCACGU    GG CCACGug gca 
||||     |||||||| ||||||| ||||||    || ||||||| || a
cggu     ggggacgc ggGGUCG GGUGCA    CC GGUGCac cgc 
    agucu        c       A      --GU  G       -    

>mmu-mir-762 (-55.20)   [mmu-miR-762:48-69]

   -   -   cgg          gca      g        
gcc cgg cuc   gucucggccc   cggucc gccggcc 
||| ||| |||   ||||||||||   |||||| |||||| a
cgg gcc GAG   CAGGGCCGGG   GUCGGG cggucgu 
   u   C   --A          ---      G        

>mmu-mir-3475 (-23.40)   [mmu-miR-3475:45-65]

--          acc  ca       -ucc   u 
  caaaucaugu   cc  cagaggg    aga g
  ||||||||||   ||  |||||||    |||  
  GUUUGGUACA   GG  GUCUucu    ucu g
AA          --C  AG       ugau   u 

>mmu-mir-802 (-31.40)   [mmu-miR-802:18-39]

------  uc      u     aUC   A          A   ---      c 
      gg  cuauua uugca   AGU ACAAAGAUUC UCC   UUgugu a
      ||  |||||| |||||   ||| |||||||||| |||   |||||| a
      cc  gauaau aaugu   uca uguuucugag agg   aacaua u
ccacuu  --      u     gac   c          -   cac      c 

>mmu-mir-672 (-44.32)   [mmu-miR-672:25-47]

    g  aucua      u g        U     U           guaua 
gaug ug     gcccuu a uuuUGAGG UGGUG ACUGUGUGUGA     c
|||| ||     |||||| | |||||||| ||||| |||||||||||     a
cuac ac     ugggag u aaagcuuc aucac ugacacacacu     u
    -  ----g      - g        u     -           auuua 

>mmu-mir-670 (-46.70)   [mmu-miR-670:21-42]

   uu     ug gc      UC        U     - UG     gaac 
ggu  ggagg  g  cugacA  CCUGAGUG AUGUG G  AAccu    u
|||  |||||  |  ||||||  |||||||| ||||| |  |||||    u
ucg  ucucc  c  gacugu  ggacuuac uauac c  uuggg    g
   cu     gu --      ga        c     u cu     uccc 

>mmu-mir-761 (-47.50)   [mmu-miR-761:15-36]

u  ca   --                      G  A  g 
 gg  agu  ggaggaGCAGCAGGGUGAAACU AC CA u
 ||  |||  |||||||||||||||||||||| || ||  
 cc  uca  ccuccucgucguuucacuuuga ug gu g
a  -c   gu                      g  -  c 

>mmu-mir-764 (-49.90)   [mmu-miR-764-5p:27-45] [mmu-miR-764-3p:66-87]

u    ac    ug    u   a     G   U   -   U           cuua 
 caac  aauc  aauc ugg ggcaG UGC CAC AUG CCUCCUccaug    u
 ||||  ||||  |||| ||| ||||| ||| ||| ||| |||||||||||     
 guug  uuag  uuag acc cUGUC ACG GUG UAC GGAGGAgguac    a
g    cu    --    u   a     A   -   A   C           auaa 

>mmu-mir-3099 (-41.40)   [mmu-miR-3099*:14-34] [mmu-miR-3099:52-73]

   ga          -      C   C    CU  a   uuu 
auc  uccccaucCC AGCUUC UUC AGCC  UG ugu   a
|||  |||||||||| |||||| ||| ||||  || |||    
uag  agggguAGGG UUGGAG GAG UCGG  ac acg   g
   aa          G      A   A    AU  -   cau 

>mmu-mir-763 (-49.80)   [mmu-miR-763:38-59]

      gga   -gc           -    a      a CA       A AAC   U      
aaugau   ggu   aggcguuuccu gggg uuaaug C  GCUGGGA G   CAG GGCcc 
||||||   |||   ||||||||||| |||| |||||| |  ||||||| |   ||| |||| u
uugcug   ucg   ucuguaaagga ccuc aauuac g  cgacccu c   guc ucggc 
      gag   uuu           a    -      c ac       c ---   -      

>mmu-mir-669a-1 (-36.80)   [mmu-miR-669a:20-41]

u   --     a     g    GU        C     C    c   au 
 gua  ugugc ugugu uauA  UGUGUGUG AUGUU AUGU uau  u
 |||  ||||| ||||| ||||  |||||||| ||||| |||| |||   
 cau  acacg acgca auau  acacacac uacaa uaca aua  u
a   ac     a     a    gc        a     -    u   ag 

>mmu-mir-666 (-47.30)   [mmu-miR-666-5p:19-40] [mmu-miR-666-3p:56-77]

   -au  --ug    c   -        --A  -     GAG      -  ag 
cug   uc    ccug gug gAGCGGGC   CA GCUGU   AGCCcc cu  g
|||   ||    |||| ||| ||||||||   || |||||   |||||| ||   
gac   ag    ggac cgc cUCGUCCG   GU CGACG   UCGGgg ga  u
   agc  ugaa    a   a        CUA  G     ---      c  ca 

>mmu-mir-759 (-31.40)   [mmu-miR-759:30-51]

ggauuau             cc     u   AG          A   U  Cu 
       aauaaauuaaaug  uaaac gGC  AGUGCAAACA UUU GA  c
       |||||||||||||  ||||| |||  |||||||||| ||| ||   
       uuguuuaauuuac  auuug ucg  ucacguuugu aaa cu  a
-----cc             aa     -   -g          -   u  ag 

>mmu-mir-496 (-35.30)   [mmu-miR-496:47-68]

     u    u        c     gu         uua 
agugu cgaa ggagguug ccaug  guguucauu   u
||||| |||| |||||||| |||||  |||||||||    
ucacg gcuu cCUCUAAC GGUAC  UAUGAGUag   u
     -    u        C     AU         uau 

>mmu-mir-673 (-43.20)   [mmu-miR-673-5p:15-36] [mmu-miR-673-3p:55-77]

u    cc       --CU     --   U      U     uc  ga 
 ggag  ugagggg    CACAG  CUC GGUCCU GGAGc  ca  g
 ||||  |||||||    |||||  ||| |||||| |||||  ||  a
 ccuc  guucccc    GUGUC  GAG UCGGGG CCUcg  gu  a
a    cc       CCAC     UU   -      -     uu  aa 

>mmu-mir-760 (-61.40)   [mmu-miR-760:70-89]

    ag    ccuc   gc   gc  --g    c    u      ac       c    acc 
cggg  gaug    ggu  ggg  gc   ucgc cccc caggcc  cagagcc ggau   u
||||  ||||    |||  |||  ||   |||| |||| ||||||  ||||||| ||||   c
gccc  uugc    cca  ccc  cg   agcg GGGG GUCUGG  GUCUCGG Cuua   a
    cu    ---c   aa   aa  uaa    A    U      --       -    aag 

>mmu-mir-674 (-60.40)   [mmu-miR-674:25-46] [mmu-miR-674*:60-81]

   cu  u  u     u        CA             G     ag  u 
ggc  ag ca caccc gagccuuG  CUGAGAUGGGAGU GUGUA  gc c
|||  || || ||||| ||||||||  ||||||||||||| |||||  ||  
ucg  uc gu guggg cucggAAC  GACUCUACCCUCG CACgu  ug a
   ac  -  -     -        AA             A     -a  g 

>mmu-mir-488 (-38.60)   [mmu-miR-488*:27-47] [mmu-miR-488:65-85]

      u    g     a  c   cu  C   U      A  C        guu 
uucggg gaga ugaga uc ucu  CC AGA AAUAGC CU UCAAacaa   u
|||||| |||| ||||| || |||  || ||| |||||| || ||||||||   c
aggucu cuuu acucu ag aga  GG UCU UUGUCG GA AGUUuguu   c
      u    a     c  a   CU  U   -      -  A        gua 

>mmu-mir-677 (-35.20)   [mmu-miR-677:6-27]

g         U    A    C     A  ---   g       ---    --uug   a 
 agccUUCAG GAUG UUAG UUCUG cu   uuc uucuucu   gaau     cug a
 ||||||||| |||| |||| ||||| ||   ||| |||||||   ||||     |||  
 ucggaaguu uuac aguc aagac gg   aag gggaaga   cuug     gac g
-         u    a    -     a  uaa   -       guc    ccgua   c 

>mmu-mir-678 (-31.70)   [mmu-miR-678:56-77]

gugg     g    g   ag  g   u  aauau    g    cca 
    acugu acuu cag  cu ugc cc     gaga augg   u
    ||||| |||| |||  || ||| ||     |||| ||||    
    ugacg uGGA GUC  GG ACG GG     CUCU ugcc   g
----     g    G   -A  A   U  -----    G    cac 

>mmu-mir-497 (-41.50)   [mmu-miR-497:14-35]

cc     c   c C    G    C         U  --   ac 
  ugccc cgc c AGCA CACA UGUGGUUUG Ac  ggc  u
  ||||| ||| | |||| |||| ||||||||| ||  |||   
  auggg gcg g uugu gugu acaccaaac ug  ccg  g
--     a   a a    g    c         c  ca   gu 

>mmu-mir-423 (-52.20)   [mmu-miR-423-5p:29-51] [mmu-miR-423-3p:65-87]

acuu   a  aaauaa       u            -AG   G    A     cua 
    gug gg      aggaagu aggcUGAGGGGC   AGA CGAG CUUUu   u
    ||| ||      ||||||| ||||||||||||   ||| |||| |||||   u
    cgc cc      uccuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
-guu   g  ---cca       u            GAG   G    -     ccu 

>mmu-mir-679 (-30.90)   [mmu-miR-679:11-32]

c       uuGG         -U   U    G  ---u  g 
 uauggcu    ACUGUGAGG  GAC CUUG Ug    gu a
 |||||||    |||||||||  ||| |||| ||    ||  
 auaucga    ugacacucc  cug gaac ac    cg u
-       ----         uc   -    g  uuuu  g 

>mmu-mir-495 (-22.40)   [mmu-miR-495:42-63]

a       u  -       --a   u    uuu 
 aagaagu gc ccauguu   uuu ucgc   u
 ||||||| || |||||||   ||| ||||    
 UUCUUCA CG GGUACAA   AAg agug   a
-       -  U       ACA   c    uuu 

>mmu-mir-680-1 (-35.80)   [mmu-miR-680:7-27]

aga   -G       ---    A  U    Gc   -ag  a  c cc    a    g 
   agu  GGCAUCU   GCUG CA GGGG  cga   uc gg g  agga gcgg c
   |||  |||||||   |||| || ||||  |||   || || |  |||| |||| a
   ucg  cuguggg   cgac gu cucc  gcu   ag cc c  uucu cguu c
---   ga       uuc    a  u    ua   aca  g  u ua    a    u 

>mmu-mir-680-2 (-35.40)   [mmu-miR-680:1-21]

    A  U  -    -A G     cgaa      c cc   c     gcac  ug  uc 
GGGC UC GC UGAC  U GGGGc    gucagg g  agg aucgg    uc  ga  u
|||| || || ||||  | |||||    |||||| |  ||| |||||    ||  ||  u
cucg gg cg acug  g uuccg    caguuc c  ucc uaguu    ag  cu  a
    -  u  g    gg g     ---a      - --   -     -aca  gu  cu 

>mmu-mir-680-3 (-23.70)   [mmu-miR-680:29-49]

gggggauuuaacaaagaacaaaa        ---C        ACA     G aga 
                       aagguGGG    AUCUGCUG   UGGGG c   a
                       ||||||||    ||||||||   ||||| |    
                       uucuacuu    uggacgac   aucuc g   g
-----------------------        cuca        -gg     g acu 

>mmu-mir-681 (-43.50)   [mmu-miR-681:2-22]

g    ---        C    ----A   cca     u     -uc      -  u  ccc 
 CAGC   CUCGCUGG AGGC     GCU   gagug ggcug   cucauc ac cu   u
 ||||   |||||||| ||||     |||   ||||| |||||   |||||| || ||    
 guug   gggcgacc uccg     uga   cucac uugac   ggguag ug ga   a
-    aca        -    ggacc   -cg     -     uuu      a  -  cga 

>mmu-mir-682 (-31.20)   [mmu-miR-682:74-94]

gccguc    -u  gg        uuc     u  aaaca    -ccg cg  gc 
      ggca  cu  cacugugg   cugca ga     gugg    g  gg  c
      ||||  ||  ||||||||   ||||| ||     ||||    |  ||  u
      ccGU  GA  GUGACACU   GACGU Cu     cacc    c  cc  g
------    CU  -A        ---     -  ----c    acaa au  ag 

>mmu-mir-449c (-43.60)   [mmu-miR-449c:26-46]

a g   aag g        u    cA  C      UU      U       -a  ac 
 g aug   u ugggugug cagg  GG AGUGCA  GCUAGC GGcuguu  ga  u
 | |||   | |||||||| ||||  || ||||||  |||||| |||||||  ||   
 c uac   a acucacgu gucu  cc ucacgu  cgaucg uugacaa  cu  u
- g   -ga g        c    -c  a      --      -       cc  au 

>mmu-mir-683-1 (-43.60)   [mmu-miR-683:71-91]

u   --aa  c   - ug     c      gg  -c     uaaaagccaagcuuu 
 ggg    gu cag c  ggagg ugcagu  ac  caggc               u
 |||    || ||| |  ||||| ||||||  ||  |||||                
 ccc    ua guc g  cCUCC GUGUCG  UG  GUCCg               c
-   gagg  c   g gu     U      AA  UC     uaggugacgucacgu 

>mmu-mir-684-1 (-18.70)   [mmu-miR-684:59-77]

       aauc  u   uaagu     u      c   -u  a a 
guagggc    ug cuu     aggga aaauua ucu  ga c a
|||||||    || |||     ||||| |||||| |||  || | a
cguucug    AC GAA     UCCCU UUUGAu aga  cu g a
       -cgA  U   ---CU     -      -   uc  a u 

>mmu-mir-684-2 (-18.80)   [mmu-miR-684:60-78]

ug       auc  u   uaagu     u      c   -u  a a 
  uagggca   ug cuu     aggga aaauua ucu  ga c a
  |||||||   || |||     ||||| |||||| |||  || | a
  guucugu   AC GAA     UCCCU UUUGAu aga  cu g a
--       -gA  U   ---CU     -      -   uc  a u 

>mmu-mir-686 (-35.50)   [mmu-miR-686:19-40]

g  a   c  g   -uuauA    -       --AC    --A    a   aua a au 
 cc cag ag ugc      UUGC UUCCCAG    GGUG   AGAa gua   g g  c
 || ||| || |||      |||| |||||||    ||||   |||| |||   | |   
 gg guc uc acg      gacg ggggguc    ccac   ucuu cau   c c  a
-  -   u  g   uuaggc    u       ggua    ggg    c   --g - ca 

>mmu-mir-719 (-30.00)   [mmu-miR-719:22-43]

---------uuuaggugcuuaaagaaca  A    --    A    AAA     uu   gu 
                            gu UCUC  GGCU CAGA   AUGUU  ugg  g
                            || ||||  |||| ||||   |||||  |||   
                            ca agag  ccga guuu   uguag  guc  a
cccacguaagacggugaagaaccgaaga  -    ga    a    --g     gu   gu 

>mmu-mir-687 (-22.40)   [mmu-miR-687:23-44]

auagucugacacacauuuua    A   U        GCA    -auc     uu 
                    caCU UCC GGAAUGCA   AUGA    cuggg  a
                    |||| ||| ||||||||   ||||    |||||  u
                    guga agg ucuuaugu   uacu    gacuu  u
--------------------    a   u        ---    gucu     ug 

>mmu-mir-688 (-32.50)   [mmu-miR-688:46-65]

gaaa    -   gaa   -      gg      uu    ag 
    gggc agu   gaa aaguag  gcuugc  gggg  a
    |||| |||   ||| ||||||  ||||||  ||||   
    cccg ucg   CUU UUCAUC  CGGACG  CUcc  g
----    c   -ac   A      AG      --    ac 

>mmu-mir-689-1 (-76.80)   [mmu-miR-689:23-43]

c   gaua          c    GU CC            ----U         -  cc 
 ccg    gccggguccc gucC  C  CGCUCGGCGGGG     CCccgcguc cu  c
 |||    |||||||||| ||||  |  ||||||||||||     ||||||||| ||   
 ggc    uggccuaggg cagg  g  gcgggccgcccc     ggggcgcgg ga  c
-   ---g          c    -- cu            ccucu         c  cg 

>mmu-mir-689-2 (-83.60)   [mmu-miR-689:23-43]

c   gaua      u     ucC     --            ----U            c 
 ccg    gccggg ccccg   GUCCC  CGCUCGGCGGGG     CCccgcgucguc c
 |||    |||||| |||||   |||||  ||||||||||||     |||||||||||| c
 ggc    uggccu ggggc   caggg  gcgggccgcccc     ggggcgcggcgg g
-   ---g      -     ---     cu            ccucu            c 

>mmu-mir-690 (-30.20)   [mmu-miR-690:83-104]

        u  --g     aau     gua    agu   aguaa  aa   -     uc 
uguguuuu gu   gagcu   uggcu   uuaa   gcu     ga  cau ucucc  c
|||||||| ||   |||||   |||||   ||||   |||     ||  ||| |||||  a
auauaAAA CA   CUCGG   AUCGG   AAuu   cga     cu  gua agagg  g
        C  ACA     ---     --A    -gu   -----  cg   g     uc 

>mmu-mir-691 (-15.30)   [mmu-miR-691:42-63]

--------gc    uua       -       cuu   ----  ug 
          ugau   uuuuugc uuucuuc   ggg    uc  c
          ||||   ||||||| |||||||   |||    ||   
          auug   AAAGACG AGAGAAG   CCU    ag  u
uauaauuuau    -uA       G       --U   UAua  uu 

>mmu-mir-692-1 (-42.82)   [mmu-miR-692:59-79]

a   u     -    a ---aacca  -gc   c   c    - cc      -   u 
 ggg ggcag ggcc c        gc   aga ugg gcgc c  agggau cuc g
 ||| ||||| |||| |        ||   ||| ||| |||| |  |||||| ||| g
 ccu ccguc ccgg g        cg   uCU ACU CGCG G  UCUCUA gag g
-   u     u    a gaucaaca  aac   C   C    A UU      u   u 

>mmu-mir-692-2 (-38.40)   [mmu-miR-692:57-77]

-------gguggcagggccacaacca  -gc   c   c    - cc      -   u 
                          gc   aga ugg gcgc c  agggau cuc g
                          ||   ||| ||| |||| |  |||||| ||| g
                          cg   uCU ACU CGCG G  UCUCUA gag g
ccuuccgugucuccggaggaucagca  aac   C   C    A UU      u   c 

>mmu-mir-693 (-60.90)   [mmu-miR-693-5p:21-41] [mmu-miR-693-3p:51-73]

a    ua                       C       U    g 
 guug  ggcaugcucauuaCAGCCACAUC GAAAGUU UCcu g
 ||||  ||||||||||||||||||||||| ||||||| ||||  
 cgac  ucguacgaguAAUGUCGGUGUAG CUUUCGA Ggga c
-    cc                       A       C    u 

>mmu-mir-694 (-23.60)   [mmu-miR-694:40-58]

----aa    ca   -      u  c     a  caa 
      aggc  gcu caggca cg uuuca cc   g
      ||||  ||| |||||| || ||||| ||    
      ucug  cGA GUCCGU GU AAAGU gg   a
uccguc    -a   A      U  A     C  acc 

>mmu-mir-146b (-40.20)   [mmu-miR-146b:29-50] [mmu-miR-146b*:67-88]

gacugagagaacuu    -  -  u   u  G        A    A    C   ga  u 
              uggc ca cc ggc cU AGAACUGA UUCC UAGG Ugu  gc c
              |||| || || ||| || |||||||| |||| |||| |||  ||  
              aucg gu gg ccg GG UCUUGACU AGGG AUCC Gca  cg u
-------cuaccau    u  c  c   U  -        C    -    C   ga  a 

>mmu-mir-669b (-39.80)   [mmu-miR-669b:25-46]

augaaugua           a    GU        C     C     ug cu 
         ugugcaugugu uauA  UUUGUGUG AUGUG AUGUg  u  a
         ||||||||||| ||||  |||||||| ||||| |||||  |   
         acgcguacgca auau  aaacacac uacau uacau  a  u
---------           c    ac        a     a     gu au 

>mmu-mir-669a-2 (-37.80)   [mmu-miR-669a:22-43]

ca   a     a     g    GU        C     C    c   au 
  ugu ugugc ugugu uauA  UGUGUGUG AUGUU AUGU uau  u
  ||| ||||| ||||| ||||  |||||||| ||||| |||| |||   
  aca acacg acgca auau  acacacac uacaa uaca aua  u
--   c     a     a    gc        a     -    u   ag 

>mmu-mir-669a-3 (-37.90)   [mmu-miR-669a:28-49]

uuccucca    --     a     g    GU        C     C    c   au 
        ugua  ugugc ugugu uauA  UGUGUGUG AUGUU AUGU uau  u
        ||||  ||||| ||||| ||||  |||||||| ||||| |||| |||   
        acau  acacg acgca auau  acacacac uacaa uaca aua  u
----agac    ac     a     a    gu        a     -    u   ag 

>mmu-mir-467b (-29.70)   [mmu-miR-467b:9-29] [mmu-miR-467b*:46-67]

cc     c  AA   CC  C             ua 
  gugug GU  GUG  UG AUGUAUAUGcgug  u
  ||||| ||  |||  || |||||||||||||  a
  cacaC CA  CAC  AC UACAUAUAcguau  u
ua     A  AC   AC  A             uu 

>mmu-mir-669c (-46.00)   [mmu-miR-669c:24-45]

   --cca   a       g     A  G         GA         -   cau 
ccu     ugu ugugcau ugugu UA UUGUGUGUG  UGUGUGUau uug   a
|||     ||| ||||||| ||||| || |||||||||  ||||||||| |||    
gga     aca acacgug acaca au aacacacac  acacacaua aau   u
   cacag   a       a     a  g         --         c   aaa 

>mmu-mir-297b (-36.90)   [mmu-miR-297b-5p:20-41] [mmu-miR-297b-3p:57-78]

       gc        --a         G  C   AAC      a    a   u 
ucuauuu  uugugugu   uAUGUAUGU UG AUG   AUGUgu uaug aua a
|||||||  ||||||||   ||||||||| || |||   |||||| |||| |||  
agguaaa  gacacaca   auacguaca ac UAC   UACACA AUAC UAU c
       -a        aac         a  A   CCA      C    A   a 

>mmu-mir-695 (-37.32)   [mmu-miR-695:15-36]

uca    -gaaucc   A      AUA       --  ----A   ca   c       c 
   cgag       uAG UUGGGC   GGUGACU  GA     gua  cag ugccuuu u
   ||||       ||| ||||||   |||||||  ||     |||  ||| ||||||| u
   gcuc       auc ggcucg   ccacugg  cu     cau  guc acggaaa a
---    aucgucu   -      --g       uc  gguuc   ug   -       c 

>mmu-mir-499 (-41.20)   [mmu-miR-499:14-34]

gggu       u  UA        A          ---  uc 
    gggcagc gU  AGACUUGC GUGAUGUUUa   gc  c
    ||||||| ||  |||||||| ||||||||||   ||   
    uccgucg cg  ucugaacg cacuacaagu   cg  u
----       u  ug        a          gua  uc 

>mmu-mir-696 (-33.10)   [mmu-miR-696:65-82]

ggucugucgcggugccug         - --     -     uuccu  uuu c 
                  aagcugucc c  cgagc cacgc     gc   c c
                  ||||||||| |  ||||| |||||     ||   |  
                  uucgacGGG G  GUUCG GUGCG     cg   g g
------------------         U UC     U     uucgu  uuc g 

>mmu-mir-720 (-28.20)   [mmu-miR-720:46-63]

      -      aau  -    g  g  uua 
cuggag ccccag   ga agau ca cu   g
|||||| ||||||   || |||| || ||   a
gACCUC GGGGUC   CU ucug gu gg   a
      C      GCU  A    -  g  uuu 

>mmu-mir-455 (-37.50)   [mmu-miR-455*:17-38] [mmu-miR-455:54-74]

cucccu  u ug  c          U      A   C   aa 
      gg g  ag gUAUGUGCCU UGGACU CAU Gug  c
      || |  || |||||||||| |||||| ||| |||  g
      cu c  uC CAUAUACGGG ACCUGA Gua cac  c
-----a  c gu  A          C      C   c   ga 

>mmu-mir-491 (-40.10)   [mmu-miR-491:18-39]

aa ug      cu   a  U      CC   C          a 
  u  acuuag  ggg AG GGGGAA  CUU CAUGAGGagu g
  |  ||||||  ||| || ||||||  ||| |||||||||| a
  a  ugaguc  ucc uc ucccuu  gaa guauuccuca a
-- gu      ag   a  u      -a   c          c 

>mmu-mir-697 (-40.70)   [mmu-miR-697:75-95]

gagu      guguccugg   u       g     u u   a    --  ua    -a au 
    ggggau         aug uggucuu acagg c cag ggug  ac  ccac  c  u
    ||||||         ||| ||||||| ||||| | ||| ||||  ||  ||||  |   
    ccucug         uac gucAGAG UGUCC G GUC CUAC  ug  ggug  g  g
----      --------a   u       G     U -   -    AA  gc    gg aa 

>mmu-mir-698 (-38.50)   [mmu-miR-698:72-90]

     -    cccu     ua        ug    cu    ---g   ---g     g 
ucauc ucug    cacug  agggaggg  gugg  augu    ggu    ggaca g
||||| ||||    |||||  ||||||||  ||||  ||||    |||    |||||  
agugg agac    gugac  UCCCUUCC  UGCU  UACa    ucg    cuugu g
     u    cccu     --        UU    CU    gaaa   uuga     a 

>mmu-mir-700 (-32.90)   [mmu-miR-700:53-73]

uuc      a  aa     -c        cu     --ggg g 
   acuggg gu  ggcuc  uuccugug  ugcag     a a
   |||||| ||  |||||  ||||||||  |||||     |  
   ugaccc CA  CUGAG  AAGGGCGC  ACguc     u a
---      C  -C     CC        --     aagca a 

>mmu-mir-701 (-34.86)   [mmu-miR-701:27-47]

    a  auc  - -     gc    aa      G  GA          uuguau 
gugg gc   ua c cuuga  aagu  UUAGCC CU  AAUAGAUGGA      a
|||| ||   || | |||||  ||||  |||||| ||  ||||||||||      g
cacc cg   au g gaacu  uuca  gaucgg ga  uuaucuaucu      a
    -  aca  c u     -a    cc      a  aa          uggagu 

>mmu-mir-702 (-49.00)   [mmu-miR-702:88-108]

cgggacaaggu           uu  ca     -   ccau  -    -  --  c     g 
           gaguggggugg  gg  ugggu ugc    gg ggac uc  ga gcugu c
           |||||||||||  ||  ||||| |||    || |||| ||  || |||||  
           CUCGCCCCAUU  CC  ACCCG acg    cc ccug ag  cu cgaca c
----------c           UC  --     U   cacu  u    u  uc  c     c 

>mmu-mir-703 (-19.80)   [mmu-miR-703:29-49]

ag       aa   u   -    cau a      CU   G ---           uug 
  acugguu  uga aac aaug   c uAAAAC  UCA A   AGGAAAGAAug   u
  |||||||  ||| ||| ||||   | ||||||  ||| |   |||||||||||    
  ugacuaa  acu uug uuau   g auuuug  ggu u   uuuuuuuuuac   g
--       -a   u   a    --u a      ac   g gug           cag 

>mmu-mir-704 (-29.40)   [mmu-miR-704:43-63]

-------------g        u    g     gucag   ca   a 
              cugggagc agag augug     cug  agg u
              |||||||| |||| |||||     |||  ||| c
              GAUCCUCG UCUC UGUAC     GAc  ucc u
caucaguuguuagg        -    G     ----A   --   u 

>mmu-mir-705 (-40.80)   [mmu-miR-705:14-33]

augucccagua  GGU           U    -A   a     uga 
           gu   GGGAGGUGGGG GGGC  cag gggaa   c
           ||   ||||||||||| ||||  ||| |||||    
           ca   cccuccauccc ccug  guc cucuu   u
---------ua  -au           u    ac   -     ucu 

>mmu-mir-706 (-25.70)   [mmu-miR-706:1-22]

       CC                  -    aa  a   u 
AGAGAAA  CUGUCUCAAAAAAcaaaa aaac  ac aaa u
|||||||  |||||||||||||||||| ||||  || ||| a
uuuuuuu  gguagaguuuuuuguuuu uuug  ug uuu c
       uc                  a    ga  a   u 

>mmu-mir-707 (-32.40)   [mmu-miR-707:7-27]

---------g   u    UC   -    U      C    g 
          gca gCAG  AUG CCGC UGCCUA Gcuu u
          ||| ||||  ||| |||| |||||| ||||  
          cgu uguu  uac ggcg acgggu cgag g
gcuuaacggg   -    ga   u    u      a    u 

>mmu-mir-708 (-48.50)   [mmu-miR-708:27-49] [mmu-miR-708*:73-94]

cuguguuugaaa     --a        A           A     C  G gg   a  a 
            ugggg   cugcccuc AGGAGCUUACA UCUAG UG G  uag ug c
            |||||   |||||||| ||||||||||| ||||| || |  ||| || u
            auucc   gacgggaG UCUUCGAGUGU AGAUC AC c  guu ac u
------------     ggg        A           C     A  a aa   c  g 

>mmu-mir-709 (-34.50)   [mmu-miR-709:69-87]

u    - g u          ua     aag     u     ua  a 
 gucc c u ucucugcuuc  cucag   ugcuc gagca  ga c
 |||| | | ||||||||||  |||||   ||||| |||||  ||  
 uAGG G A GGAGACGGAG  Ggguc   acgag uuugu  cu u
-    A G C          --     acg     -     -c  g 

>mmu-mir-710 (-34.10)   [mmu-miR-710:20-41]

    c  ---g   -aa    a   -    -  UGG           cuu      aaa 
cucu uc    uca   uaga gCC AAGU CU   GGAGAGUUGAG   ggugug   a
|||| ||    |||   |||| ||| |||| ||   |||||||||||   ||||||    
gagg ag    ggu   gucu ugg uuca ga   uuucucaacuu   ccauac   c
    u  guga   gaa    a   a    a  ---           -cc      agu 

>mmu-mir-711 (-38.00)   [mmu-miR-711:49-70]

   g      -    uga          a    g      gc 
cau uuccua acuu   aucucuucuu gggu cuucag  a
||| |||||| ||||   |||||||||| |||| ||||||   
gua aggggu uGAA   UAGAGAGGGG CCCA GGGguc  a
   g      c    -UG          -    -      ga 

>mmu-mir-712 (-72.60)   [mmu-miR-712:10-30] [mmu-miR-712*:76-97]

      cuu   - UU        C   -  C   uc      -   - -      g 
ucuccg   CUC C  CACCCGGG GGU AC cgc  cggcgc cgg c ccgcgg a
||||||   ||| |  |||||||| ||| || |||  |||||| ||| | ||||||  
aggggc   gag G  GUGGGCCC CCA UG GCG  gccgcg gcc g ggcgcc c
      -uu   c UU        -   C  A   Ua      u   u c      g 

>mmu-mir-713 (-37.10)   [mmu-miR-713:69-87]

g    -   -c          auug   a   a a   g u  a   --g   a   c 
 gccu auc  ggaggcccug    guu gug g cuu a ug cau   agc ccu c
 |||| |||  ||||||||||    ||| ||| | ||| | || |||   ||| ||| c
 uggg uag  ccuucgggau    CGA CAC C GAA U AC GUg   uug gga u
-    c   aa          ---a   -   A G   G C  -   aga   -   u 

>mmu-mir-714 (-58.60)   [mmu-miR-714:1-21]

  A  -A    C GU  -    -       -       u  g   g g   g   c 
CG CG  GGGC G  CG GUCG Cccugcg gugguug cu ugu u uuu ggu u
|| ||  |||| |  || |||| ||||||| ||||||| || ||| | ||| ||| u
gc gc  cccg c  gc cggu ggggcgc cgccagc gg gcg a ggg ucg g
  c  gg    - ug  g    u       u       u  g   g g   g   c 

>mmu-mir-715 (-57.80)   [mmu-miR-715:15-35]

    g     aggg U    -  ----A   -     - G        acuu     cc 
ggcu gggag    C CCGU GC     CAC CCCCG C UGcgcggu    uccuc  c
|||| |||||    | |||| ||     ||| ||||| | ||||||||    |||||  u
cugg cccuc    g ggca cg     gug ggggc g gcgugccg    gggag  c
    g     --gg u    a  gaugg   u     a g        --cc     uc 

>mmu-mir-500 (-42.90)   [mmu-miR-500:59-80]

cuccucu    c  c     -         uau ug     uuag   uau 
       gcuc cc ucucu aauccuugc   c  ggugc    ugc   c
       |||| || ||||| |||||||||   |  |||||    |||   u
       cgag gg agagA UUGGGAACG   G  CCACG    Acg   c
-------    u  a     C         --- GU     --UA   uaa 

>mmu-mir-501 (-47.40)   [mmu-miR-501-5p:24-45] [mmu-miR-501-3p:61-82]

    -   ---  -u       c       UC     U   U     AAAa   uau 
cuuc ugc   uc  gcucauc ucucuAA  CUUUG CCC GGGUG    ugc   u
|||| |||   ||  ||||||| |||||||  ||||| ||| |||||    |||   u
gagg acg   ag  cgagugg agggGUU  GGAAC GGG CCCAC    Acg   g
    u   ucu  uc       a       UA     -   -     -GUA   uau 

>mmu-mir-717 (-25.30)   [mmu-miR-717:34-55]

uuguccgcuauca   -uacc         c      ----A   A    -  C     C  a 
             cug     gucauuuuu aguCUC     GAC GAGA UA CUUCU Ug a
             |||     ||||||||| ||||||     ||| |||| || ||||| ||  
             gac     uagugaaga uuaggg     uug cucu gu gaaga ac u
-------------   cuaaa         c      aagcc   c    c  c     u  u 

>mmu-mir-450b (-31.80)   [mmu-miR-450b-5p:14-35] [mmu-miR-450b-3p:50-71]

             UUU     U        G     auaa 
gauacagaauuau   UGCAG AUGUUCCU AAUAc    c
|||||||||||||   ||||| |||||||| |||||    a
cuauguuuuaaUA   ACGUU UACAAGGG UUAug    u
             CGU     U        -     cgaa 

>mmu-mir-505 (-43.20)   [mmu-miR-505:56-77]

aaau      ac    u   gg      g    a        -u  g 
    ugaugc  ccag ggg  agccag aagu uugauguu  cu c
    ||||||  |||| |||  |||||| |||| ||||||||  ||  
    acuaug  gguc cUC  UUGGUC UUCA AACUGCga  gg c
----      -a    u   UU      G    C        uu  a 

>mmu-mir-718 (-53.40)   [mmu-miR-718:60-80]

ac   cc         gaa     c  ag  c    u       gg 
  gcc  cguguggcg   ggccg gg  gg aaga ggcggcg  u
  |||  |||||||||   ||||| ||  || |||| |||||||  c
  cgg  gcacGCUGU   CCGGC CC  CC UUCu ccgccgc  g
--   -a         GGG     -  -G  -    -       ga 

>mmu-mir-721 (-16.20)   [mmu-miR-721:7-27]

------ggaagaCA U     UAAA   GG   aa    ac  g  a 
              G GCAAU    AGG  GAA  aagu  cu gg u
              | |||||    |||  |||  ||||  || || g
              c cguua    uuc  uuu  uuua  ga uc u
aagguucguccuca -     -uug   uu   ac    -a  g  u 

>ppt-MIR1211 (-62.00)   [ppt-miR1211*:17-37] [ppt-miR1211:76-96]

u         g - -aa                       gggug          c 
 uacaugauu u c   cAGGGAGGGAUGGUUAUGCAAGa     caagaggugg a
 ||||||||| | |   |||||||||||||||||||||||     ||||||||||  
 auguauuga a g   GUCCUUCUCUGCCAGUACGUucu     guucucuacu g
a         g u gaC                       acgaa          a 

>ppt-MIR1212 (-46.30)   [ppt-miR1212:59-79]

g  ug    g      c  c      g     a    -    g c 
 ua  agga uugcau cu ugcugu cccac ugcg ucgu g g
 ||  |||| |||||| || |||||| ||||| |||| |||| |  
 au  uccu gGCGUA GA ACGACA GGGUG gcgc ggcg u c
-  gu    a      A  U      -     C    c    g g 

>ppt-MIR1214 (-40.00)   [ppt-miR1214:16-36]

u u      guuu   A         UC      CCa        uu 
 g gguugg    ucU CUAUGAGAA  UCGCGG   aggugguu  g
 | ||||||    ||| |||||||||  ||||||   ||||||||   
 c ccgauc    aga gauacucuu  agcguc   uuuaccag  g
a c      aagu   c         uu      ---        ca 

>ppt-MIR1215 (-53.70)   [ppt-miR1215:18-38]

    a   u       -c    U  A           G       caacuugaacagcauucg 
cgug agg acuggag  UCAU GC AAACUGUAUAC Auccuuu                  a
|||| ||| |||||||  |||| || ||||||||||| |||||||                   
guac ucc ugaccuc  ggug cg uuugacauaug uaggaga                  a
    a   c       aa    u  c           g       cucguuaucgguguucga 

>ppt-MIR1216 (-83.60)   [ppt-miR1216:41-61]

        -   uuu     -uc   u  cu    a         U       C       U u   aa g       gu 
gcgagguu ggu   guaug   cag gu  guca ugucguUGA GGUGAUG GCUUGUA C cga  g accauuc  g
|||||||| |||   |||||   ||| ||  |||| ||||||||| ||||||| ||||||| | |||  | |||||||   
cgcuccaa cca   cauac   guc cg  cagu acagcaacu ccacuac cgaacau g gcu  u ugguaag  a
        a   ccu     uuu   -  cc    -         c       c       u u   gc g       gg 

>ppt-MIR1217 (-43.10)   [ppt-miR1217-5p:20-40] [ppt-miR1217-3p:75-95]

   ug      g   au    GU        G     GG     c   u -   g 
ucc  uuucug uug  cuUG  AUCAUGUU CAAAU  Caaaa cug g acc g
|||  |||||| |||  ||||  |||||||| |||||  ||||| ||| | ||| a
agg  gaaggc aac  GAAC  UAGUACGA GUUUA  guuuu gac c ugg a
   uu      -   au    UG        A     Aa     u   u a   u 

>ppt-MIR1218 (-62.70)   [ppt-miR1218:29-49]

   u    aca   g   u      c   C              CU     -  -gaa        ag u 
cag gauu   ugu ucg gguagg auC UUAGAGUCGUAGGC  CUGug ug    uucaagau  u c
||| ||||   ||| ||| |||||| ||| ||||||||||||||  ||||| ||    ||||||||  | a
guc uuaa   aca ggc cuaucc uag agucucagcauccg  gacac ac    aaguuuug  g c
   u    ---   g   u      a   a              ag     u  acac        cu a 

>ppt-MIR1219a (-67.20)   [ppt-miR1219a:29-49]

u          -c       a  ca  -  C      -  U U  C       a        ucc   a 
 gaagugugga  gauggag gu  gc cu UUCCUG CC C CA UAGCUUc ucccuucc   cua a
 ||||||||||  ||||||| ||  || || |||||| || | || ||||||| ||||||||   ||| u
 cuucacaccu  uuacuuc ca  cg ga aaggac gg g gu aucgagg agggaggg   gau u
a          au       c  --  c  u      u  u -  u       a        ucu   u 

>ppt-MIR1219b (-29.40)   [ppt-miR1219b:3-23]

  C       C     C   C   aucccuucgaaccc 
cu UUCCUGC UCUCA UAG UUc              g
|| ||||||| ||||| ||| |||              a
ga aaggacg agggu auc aag              a
  c       a     u   -   gaauggaaucaugg 

>ppt-MIR1219c (-54.50)   [ppt-miR1219c:6-26]

--------------------------------------------------------------------ggccuCU      C   -  C       a     c     cu 
                                                                           UCCUGC UCU CA UAGCUUc ucccu agaag  g
                                                                           |||||| ||| || ||||||| ||||| |||||   
                                                                           aggacg aga gu aucgagg aggga ucuuc  a
ccggugauguugucuucuuaaacucauguguuuauuaccuucugucuaaccaaccucagguucucacguuagaua      -   a  c       a     c     ua 

>ppt-MIR1219d (-68.90)   [ppt-miR1219d:29-49]

           c  ag ac    a  -  U      C  CU  C         c      u c   a 
agaggcgugug gg  c  cgug gu cu UUCCUG CU  CA UAGCUUcuu ccuccc g cug g
||||||||||| ||  |  |||| || || |||||| ||  || ||||||||| |||||| | ||| u
ucuuuguacgc cc  g  gcac cg ga aaggac ga  gu aucgaggaa ggaggg c gac c
           a  cu au    g  c  u      a  ug  u         u      u u   g 

>ppt-MIR1220a (-82.60)   [ppt-miR1220a:170-190]

        c            c     g    u c    ugauuuucucaauaucuucacguugguggccacguucgaacauaucccaugcgggcaacucc 
acuucuug acuccucuaucu ccucg cacc g acag                                                              g
|||||||| |||||||||||| ||||| |||| | ||||                                                              g
ugaagaac ugaggaGAUAGA GGAGU GUGG C Uguc                                                              c
        u            A     G    C U    ucagcauccaaacucguucccauaggaggucuaccauucguugcgaccggcacauguggaug 

>ppt-MIR1220b (-83.60)   [ppt-miR1220b:170-190]

      c              c     g    --u   c    auuuuaucaauaucuucacguugguggccacguucgaacauaucccaugcgggcaacuc 
acuucu ggacuccucuaucu ccucg cacc   gca aguc                                                           c
|||||| |||||||||||||| ||||| ||||   ||| ||||                                                           g
ugaaga cuugaggaGAUAGA GGAGU GUGG   Ugu ucag                                                           g
      a              A     G    CCU   c    cauccaaacucguccccauaggaggucuaccauucguugcgaccggaacauguggaugc 

>ppt-MIR533b (-78.30)   [ppt-miR533b-5p:17-37] [ppt-miR533b-3p:90-110]

      -cc               C             -    a  c          gac  u 
ggagga   gauauggaGAGCUGU CAGGCUGUGAGGG gagc cu guauucuuuu   cu u
||||||   ||||||||||||||| ||||||||||||| |||| || ||||||||||   || g
ucuccu   cuauguCUCUCGACA GUCUGACACUCcc cucg ga cauaagggag   ga c
      ucu               U             u    c  -          -aa  u 

>ppt-MIR535d (-48.50)   [ppt-miR535d:3-23]

      A   A     A      cg      g    u   g 
ggUGAC ACG GAGAG GCACGC  gaaugc uuca gca c
|||||| ||| ||||| ||||||  |||||| |||| ||| g
ccacug ugc cucuc cgugcg  cuugug aggu cgu a
      c   c     c      ag      g    c   g 

>ppt-MIR1221 (-79.40)   [ppt-miR1221-5p:21-41] [ppt-miR1221-3p:137-158]

    -   g   a    gc        G      -         a    uu   cu   g         uuccgcuggcggcgguuugugu 
aacu gau gag aacu  cgUGGAUG UGUGCA GGGUCAAAu cucu  ugg  uuc auguguguu                      c
|||| ||| ||| ||||  |||||||| |||||| ||||||||| ||||  |||  ||| |||||||||                       
uugg cug cuc uuga  GCAUCUAU ACACGU CCCGGUuua gagg  acu  aag uauacacag                      g
    u   g   c    ac        G      A         c    --   --   -         guugggugauuccaguggugaa 

>ppt-MIR1222a (-65.30)   [ppt-miR1222a:77-97]

    aca   c    -----             cu         a          u    aa    gc 
cacg   uag uggu     uguugugggcauu  ugugcuagu aacuccuuca gcag  gugc  u
||||   ||| ||||     |||||||||||||  ||||||||| |||||||||| ||||  ||||  u
gugc   auu gcca     acaacacccguaa  AUAUGGUUA UUGAGGAAGU cguc  cacg  c
    --a   a    guagu             au         C          U    --    au 

>ppt-MIR1223a (-67.30)   [ppt-miR1223a:90-110]

          -     caa                    c  -   ----    uagua    gc 
agacuagagg gucag   gggugugugacucuauaauc aa gcu    gugc     gauc  u
|||||||||| |||||   |||||||||||||||||||| || |||    ||||     ||||   
ucugaucuuc caguc   UCCACAUACUGAGAUGUUag uu cga    cacg     cuag  u
          a     ACC                    c  a   acca    ugaag    aa 

>ppt-MIR390c (-61.60)   [ppt-miR390c:13-33] [ppt-miR390c*:105-125]

       uua   A        G          c  -  ca   uuu      -      uu   a  g 
gguauaa   caG GCUCAGGA GGAUAGCGCC au cu  guc   uuuagc auccaa  gaa ug u
|||||||   ||| |||||||| |||||||||| || ||  |||   |||||| ||||||  ||| || u
ccauguu   GUU CGAGUCUU CCUGUCGCgg ua ga  cgg   agaucg uagguu  cuu ac a
       uac   A        A          -  c  ag   --c      a      uc   -  a 

>hsv1-mir-H1 (-42.90)   [hsv1-miR-H1:15-35] [hsv1-miR-H1*:53-75]

  a    aa      A       AC   AA   GA  ucc  a 
cg gggg  cggggG UGGAAGG  GGG  GUG  ag   ug u
|| ||||  |||||| |||||||  |||  |||  ||   || a
gc cccc  gccUCC ACCUUCC  CCC  CAC  Uc   ac c
  -    cg      C       GU   CC   -A  -cu  c 

>bta-mir-26a-2 (-42.24)   [bta-miR-26a:14-35]

      gg ug  UU         C          guuucc 
ggcugu  c  ga  CAAGUAAUC AGGAUAGGCU      a
||||||  |  ||  ||||||||| ||||||||||       
ucgacg  g  cu  guucauuag ucuuauccgg      u
      ga gu  uu         u          aguguc 

>bta-mir-18b (-24.80)   [bta-miR-18b:8-29]

cu       --   U    C   U     UAgu  ag ag 
  uguguUA  AGG GCAU UAG GCAGU    ga  c  c
  |||||||  ||| |||| ||| |||||    ||  |   
  acacggu  ucc cgua auc cguca    cu  g  u
--       cu   u    a   c     ---u  aa ac 

>bta-mir-29a (-24.90)   [bta-miR-29a:41-63]

            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uAUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 

>bta-let-7f-2 (-40.70)   [bta-let-7f:8-29]

u      U   GU                uuagggucauac 
 guggga GAG  AGUAGAUUGUAUAGUU            c
 |||||| |||  ||||||||||||||||             
 cacccu uuc  ucaucugacauaucaa            c
g      -   ug                uagagguucuac 

>bta-mir-101 (-31.40)   [bta-miR-101:49-69]

  ug  c                    c a    guaua 
ac  uc uuuuucgguuaucaugguac g ugcu     u
||  || |||||||||||||||||||| | ||||      
ug  gg aagAAGUCAAUAGUGUCAUG C AUgg     c
  gu  u                    A -    aaagu 

>bta-mir-103-1 (-28.60)   [bta-miR-103:46-68]

cu   c  --    u  u           c   u g a 
  gcc uc  ggcu cu uacagugcugc uug u c u
  ||| ||  |||| || ||||||||||| ||| | |  
  cgg AG  UCGG GA AUGUUACGACG Aac a g a
--   a  UA    -  C           -   u g u 

>bta-mir-148a (-28.20)   [bta-miR-148a:44-65]

              -  -a    cc    -   aa 
gaggcaaaguucug ag  cacu  gacu cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 

>bta-mir-151 (-42.20)   [bta-miR-151*:8-28] [bta-miR-151:44-64]

    c            CA          c ucu 
ccug ccUCGAGGAGCU  CAGUCUAGUa g   c
|||| ||||||||||||  |||||||||| |    
ggac GGAGUUCCUCGA  GUCAGAUCau c   a
    a            -A          c ccu 

>bta-mir-16b (-40.20)   [bta-miR-16b:17-37]

caua     uc     U         UA        C  --    aa 
    cuugu  cgcug AGCAGCACG  AAUAUUGG gu  agua  a
    |||||  ||||| |||||||||  |||||||| ||  ||||  u
    ggaca  gcgau ucgucgugu  uuauaacc ca  uuau  a
--ag     gu     u         ua        a  aa    aa 

>bta-mir-18a (-22.00)   [bta-miR-18a:6-27]

u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAg ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cgg  uucc cgu  auc cguc auc ac  u a
a   uc    u   ga   c    -   u  ga u 

>bta-mir-20a (-31.00)   [bta-miR-20a:8-30]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAG ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>bta-mir-21 (-35.80)   [bta-miR-21:8-31] [bta-miR-21*:47-68]

u     gU        A     A     A    u a 
 gucgg  AGCUUAUC GACUG UGUUG CUgu g a
 |||||  |||||||| ||||| ||||| |||| | u
 cagUC  UCGGGUAG CUGAC ACAAc ggua c c
a     UG        -     G     -    - u 

>bta-mir-221 (-44.20)   [bta-miR-221:65-86]

-----ccaaca       cuag   a    -  ug   u         auuu    -      
           uccaggu    ggc ugaa cc  gca acaauguag    cugu guuug 
           |||||||    ||| |||| ||  ||| |||||||||    |||| |||| u
           aggucca    ucg acUU GG  CGU UGUUACAUC    GAca cgagu 
uucuugcacaa       ----   g    U  GU   C         ----    a      

>bta-mir-222 (-43.10)   [bta-miR-222:69-89]

gcugcu  aau ugu    a  c   au              -     auc   ucuu 
      gg   g   aggu cc uca  ggcucaguagccag uguag   cug    u
      ||   |   |||| || |||  |||||||||||||| |||||   |||    u
      cc   c   ucua gg agu  cUGGGUCAUCGGUC ACAUC   gac    g
-----u  -au --u    c  u   cu              U     GAu   uaau 

>bta-mir-26b (-42.10)   [bta-miR-26b:15-36]

-u  -    ga   -   U        UC           u ug 
  gc ccgg  ccc agU CAAGUAAU  AGGAUAGGUUg g  c
  || ||||  ||| ||| ||||||||  ||||||||||| |   
  cg ggcc  ggg ucg guucauua  ucuuguccgac c  u
cc  u    gg   c   -        cc           - ug 

>bta-mir-27a (-39.20)   [bta-miR-27a-5p:14-35] [bta-miR-27a-3p:54-73]

uggccu    a  A         UG  U       g uccac 
      gggg gc GGGCUUAGC  CU GUGAGCA g     a
      |||| || |||||||||  || ||||||| |      
      cccc cG CUUGAAUCG  GA CACUUgu c     u
------    -  C         GU  -       g uaaac 

>bta-mir-30d (-27.64)   [bta-miR-30d:6-29]

guu  U         CCC           guacca 
   gu GUAAACAUC   GACUGGAAGCU      c
   || |||||||||   |||||||||||       
   cg cguuuguag   cugacuuucga      a
cau  u         --a           aucgac 

>bta-mir-320 (-36.80)   [bta-miR-320:48-69]

aaaaacgaaaaagag        uu       c      g 
               gccuucuc  cccgguu uucccg a
               ||||||||  ||||||| ||||||  
               CGGGAGAG  GGGUCGA AAgggc g
gggagaaggaaaaAG        UU       A      u 

>bta-mir-484 (-20.70)   [bta-miR-484:2-23]

   -   CUC       UCCCGAUaaaccucu 
gUC AGG   AGUCCCC               a
||| |||   |||||||                
cgg ucc   ucggggg               a
   c   --a       gcccuuccagggaua 

>bta-mir-499 (-52.42)   [bta-miR-499:14-34]

--------------------       c   c  UA        A          acucc 
                    gggcggg ggc gU  AGACUUGC GUGAUGUUUa     u
                    ||||||| ||| ||  |||||||| ||||||||||     c
                    ccugccc ucg cg  ucugaacg cacuacaagu     u
ugggacggguccgucgcacc       u   u  ug        a          gcacc 

>bta-mir-99a (-39.60)   [bta-miR-99a:13-33] [bta-miR-99a*:50-68]

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUg ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu UGGGUAUCU  GCU GAACac gc   g
gu          c         UC   C      -  cag 

>bta-mir-125a (-40.70)   [bta-miR-125a:15-37]

u     c u   c UC  UG   C    UA        ----  a 
 gccgg c cug g  CC  AGA CCUU  ACCUGUGa    gg c
 ||||| | ||| |  ||  ||| ||||  ||||||||    ||  
 cggcc g ggu c  gg  ucu ggag  uggacacu    cc g
c     u c   c ga  gu   u    --        ggga  u 

>bta-mir-125b-1 (-42.30)   [bta-miR-125b:15-36]

c     c   u  -a    U    C           Au     c 
 gcgcg cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
 ||||| ||| ||  |||| |||| |||||||||||  ||||| g
 cgcgc gag gu  aggg uucu ggauugggcac  uaaau u
c     u   c  cg    -    c           -c     u 

>bta-mir-126 (-31.50)   [bta-miR-126*:9-29] [bta-miR-126:47-67]

u     - a           U       C cug   c 
 gacgg g CAUUAUUACUU UGGUACG G   uga a
 ||||| | ||||||||||| ||||||| |   |||  
 cuguc C GUAAUAAUGAG GCCAUGC c   acu c
a     G -           U       u -aa   u 

>bta-mir-128-1 (-35.90)   [bta-miR-128:50-70]

u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 

>bta-mir-145 (-41.62)   [bta-miR-145:16-38]

c   u  u     c  UC    U  C            uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu uc  guca aa gguccuuagggg     u
u   u  u     -  uu    u  a            uagaa 

>bta-mir-181a-2 (-47.00)   [bta-miR-181a:39-62]

ugccagggccaggacccagucuuca     cu      A   U      CU       A    ggga 
                         gagga  ccaagg ACA UCAACG  GUCGGUG GUUu    u
                         |||||  |||||| ||| ||||||  ||||||| ||||    u
                         uuccu  gguucc ugu aguugc  cagccac caaa    u
------------------------a     ug      a   c      --       -    aaag 

>bta-mir-199a-1 (-40.00)   [bta-miR-199a-5p:31-52] [bta-miR-199a-3p:70-91]

uggaagcuucuggagau   -    c   gcC       U        C   --Uca  ac 
                 ccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
                 ||| |||| |||   ||||||| |||||||| |||     ||   
                 gga cggg cag   GGUUACA GUCUGAUG ACA     cc  a
----------------g   a    u   AUU       C        -   uguug  gu 

>bta-mir-205 (-34.72)   [bta-miR-205:7-28]

      UC           C        ucucg 
cucuug  CUUCAUUCCAC GGAGUCUG     u
||||||  ||||||||||| ||||||||     a
gaggac  gaagugaggug cuuuagac     c
      uu           a        caacc 

>bta-mir-27b (-50.40)   [bta-miR-27b:61-81]

-    -    gacg                  auug        ugac     
 accu cucu    aggugcagagcuuagcug    gugaacag    uggu 
 |||| ||||    ||||||||||||||||||    ||||||||    ||| u
 ugga gaga    uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
g    a    --ag                  --GA        --uc     

>bta-mir-30b (-39.00)   [bta-miR-30b-5p:17-38] [bta-miR-30b-3p:55-75]

-     uuu      caU          U  -A        ua  ac 
 ccaag   ucaguu   GUAAACAUCC AC  CUCAGCUg  ac  a
 |||||   ||||||   |||||||||| ||  ||||||||  ||   
 gguuc   agucga   CAUUUGUAGG UG  GGGUCggc  ug  c
a     ---      cUU          -  GA        --  ag 

>bta-mir-31 (-42.90)   [bta-miR-31:25-45]

uccuguaacuu   acu      gA     G   C         -U   gaa 
           gga   ggagag  GGCAA AUG UGGCAUAGC  guu   c
           |||   ||||||  ||||| ||| |||||||||  |||    
           ccu   ucucuc  ccguu uac accguaucg  caa   u
----------g   -gu      ua     a   a         uc   gcg 

>bta-mir-34b (-36.60)   [bta-miR-34b:14-35]

     cg    -guA       U      C        cu u 
gugcu  guuu    GGCAGUG AAUUAG UGAUUGua  c c
|||||  ||||    ||||||| |||||| ||||||||  |  
cacgg  caaa    ccgucac uugauc acuaacau  g a
     aa    acua       c      -        uc u 

>dre-mir-190b (-35.14)   [dre-miR-190b:15-36]

u       a    - UG              CG    - uuucuu 
 guuacag cuau g  AUAUGUUUGAUAUU  GUUG c      u
 ||||||| |||| |  ||||||||||||||  |||| |       
 caguguc gaua c  uauacagacuauaa  caac g      a
a       a    u cu              au    u uacuau 

>dre-mir-722 (-48.50)   [dre-miR-722:56-79]

                           g  c      g ---a  c 
ggaacggaguggaauuugaaacguuuu gc aaaaau u    gc a
||||||||||||||||||||||||||| || |||||| |    ||  
ucuugccucgcuUUAGACUUUGCAAAG CG UUUUUg g    cg u
                           A  U      g gaaa  g 

>dre-mir-499 (-42.50)   [dre-miR-499:17-38]

   g   --     g    UA       C           -ga  a 
acu aga  gggag cagU  AGACUUG AGUGAUGUUUA   ga a
||| |||  ||||| ||||  ||||||| |||||||||||   ||  
uga ucu  uccuc gucg  ucugaau ucacuacaagu   cu u
   g   ug     g    ug       u           aca  g 

>dre-mir-723 (-33.50)   [dre-miR-723*:15-38] [dre-miR-723:53-75]

u  --          aG    U     A       ACU       a 
 gc  guagagauaa  ACAG UUUAA UGAUGUU   UUuuuuc a
 ||  ||||||||||  |||| ||||| |||||||   |||||||  
 cg  caucucuauU  UGUC AAAUU ACUACAG   AAagagg a
a  aa          CG    U     A       ---       u 

>dre-mir-724 (-29.10)   [dre-miR-724:14-35]

      a u      -        UU  C A     agu ag 
cagcag c ggauUU AAAGGGAA  UG G CUGUU   c  a
|||||| | |||||| ||||||||  || | |||||   |   
gucguc g ucuaga uuuuccuu  ac c gacaa   g  u
      c u      a        cc  a c     gau uu 

>dre-mir-725 (-50.10)   [dre-miR-725:48-69]

         a            ug           gaag 
cugcagugc cauugcuaggaa  guggcugagau    a
||||||||| ||||||||||||  |||||||||||     
gacgucgcg gUGAUGAUCUUU  UACUGACUUua    g
         c            GU           ggac 

>dre-mir-726 (-29.70)   [dre-miR-726:55-75]

     c     c    aa   c      uc      a  c  g 
ucagu guaug cugg  uuc gcuagu  ugaacu uu gu a
||||| ||||| ||||  ||| ||||||  |||||| || || u
aguca cauau GGCU  AAG CGAUCA  ACUUga aa cg u
     a     a    -C   A      UC      a  -  g 

>dre-mir-727 (-32.30)   [dre-miR-727*:14-35] [dre-miR-727:57-78]

       u      C            CU  -    ccg   ccau 
cuguaug cauuuU AGUCUUCAAUUC  CC CAGC   uac    c
||||||| |||||| ||||||||||||  || ||||   |||    g
gacaugu gugaaA UCAGAAGUUGAG  GG GUUG   gug    a
       c      U            -C  A    --a   ucaa 

>dre-mir-728 (-34.40)   [dre-miR-728:52-73]

     uc              ag   aua       a  gaa 
caucu  ugaggaaauguagu  acu   aguauac gu   c
|||||  ||||||||||||||  |||   ||||||| ||    
gugga  acuCUUUUGCAUCA  UGA   UCAUAug ca   a
     ga              CA   --A       -  agu 

>dre-mir-729 (-39.09)   [dre-miR-729:62-85]

    aagg     c a          g      ug  a   a  uguaagu 
cguc    gccau c gugacccggg uuguau  ua cca gc       g
||||    ||||| | |||||||||| ||||||  || ||| ||        
guag    uggua g caUUGGGUCC AGCAUA  AU GGU Cg       u
    ----     a a          -      GU  G   A  uaguacc 

>dre-mir-34c (-32.30)   [dre-miR-34c:16-38]

     u  gg     A  C    CA      U      aauc 
ugcug gu  ucacc GG AGUG  GUUAGU GAUUAC    c
||||| ||  ||||| || ||||  |||||| ||||||     
augau cg  agugg cc ucac  caauca cuaaug    a
     -  ga     a  a    uc      -      aaau 

>dre-mir-730 (-41.80)   [dre-miR-730:14-36]

        cg      U       CA       -U U  uc 
ggguucuc  gucUCC CAUUGUG  UGCUGUG  G cu  a
||||||||  |||||| |||||||  |||||||  | ||  g
cucagggg  cggagg guaacgu  gcgacac  c gg  u
        au      u       cc       uc u  uc 

>dre-mir-731 (-41.60)   [dre-miR-731:15-38]

u     ug    -  AA       UUUUC      AUC  ca    u 
 gaugc  aucu gg  UGACACG     UCCCGG   Gc  gaaa a
 |||||  |||| ||  |||||||     ||||||   ||  ||||  
 cuacg  uaga cc  acugugc     agggcc   cg  cuuu u
a     gu    a  -g       -uuca      -ac  --    g 

>dre-mir-732 (-33.40)   [dre-miR-732:52-73]

     aag              aaa       gu   uuaa 
agaua   uuccaccgaggguu   uguuuug  auu    u
|||||   ||||||||||||||   |||||||  |||    a
uuuau   gaggUGGCUCUCAA   ACGAAAC  uaa    g
     gua              GAG       UC   cugu 

>dre-mir-733 (-32.30)   [dre-miR-733:24-46]

u   uuuu   ua   -   c  uU C        AGC    U      u 
 ggc    ccg  gug ucg ug  G GUUGGUUU   UCAG GGUUac u
 |||    |||  ||| ||| ||  | ||||||||   |||| ||||||  
 ccg    ggc  cac ggu ac  u caacuaaa   aguc cuagug c
a   ---u   uc   u   -  uu c        --a    c      u 

>dre-mir-15c (-28.60)   [dre-miR-15c:14-34]

       c g   A       C  C       U  aca  a 
ccuuaga c cua AGCAGCG GU AUGGUUU Ca   uu g
||||||| | ||| ||||||| || ||||||| ||   ||  
ggaauuu g gau ucgucgu ua uaccgaa gu   aa a
       u a   c       u  c       c  -gg  g 

>dre-mir-734 (-44.30)   [dre-miR-734:59-81]

u     ug     u a  c            ggc     gugga   u 
 gauau  agagc g ac auucugcagcau   ugccu     ucc c
 |||||  ||||| | || ||||||||||||   |||||     ||| u
 cuaug  ucuuG C UG UAAGACGUCGUA   AUGga     agg g
a     gu     C A  C            --A     ----a   g 

>dre-mir-735 (-29.70)   [dre-miR-735:37-58]

        --cgaa         uu  ucuu 
ggcugguc      ggcgguggg  ag    c
||||||||      |||||||||  ||    u
cugacCAG      UCGCCACCC  UC    c
        UUCAAA         UC  cccu 

>dre-mir-736 (-43.70)   [dre-miR-736:48-68]

u                           g        au 
 cuacugacagagaagcuuuuuguuugu uuauguuu  u
 ||||||||||||||||||||||||||| ||||||||   
 gaugauugucuUUUUGAAAAACAAGCA AAUGuaaa  u
g                           G        cu 

>dre-mir-737 (-38.40)   [dre-miR-737:60-80]

   cag   -      u  ug                     ---g   a 
cca   cug cugugc gu  uuuuuuuagguuuugauuuuu    uga a
|||   ||| |||||| ||  |||||||||||||||||||||    |||  
ggu   gau gacgcg cA  AAAGAAAUCCAAAACUAAaag    gcu u
   --a   a      u  UA                     agua   g 

>dre-mir-738 (-66.30)   [dre-miR-738:1-23]

   AC   -          ----  CU       a       cu      g 
GCU  GGC CCGCGUCGGG    AC  Cucgucu gcgacuu  ccccuc g
|||  ||| ||||||||||    ||  ||||||| |||||||  ||||||  
cgg  ccg ggcgcggccc    ug  gagcggg cgcugga  ggggag g
   cu   u          cucc  -u       g       ug      g 

>dre-mir-740 (-45.90)   [dre-miR-740:13-34]

  a    u    -   AAAA               u        -   acu    ga 
gc uuug gugc AUA    GUGGUAUGGUACAGU ugcuuuua ggu   uuuu  c
|| |||| |||| |||    ||||||||||||||| |||||||| |||   ||||   
cg ggac caug uau    uaccaugccauguca gcgaaaau ccg   aagg  a
  g    -    g   gcca               u        a   acu    ug 

>xtr-let-7b (-47.90)   [xtr-let-7b:6-27]

     U               G      -----gg      ug 
cuggc GAGGUAGUAGUUUGU UAGUUa       gggcag  g
||||| ||||||||||||||| ||||||       ||||||   
gaccg uuccgucaucaaaca aucaau       cccguu  u
     -               g      agaggua      ug 

>xtr-mir-1a-2 (-31.10)   [xtr-miR-1a:47-67]

u    g                g      ----   a 
 ggga acauacuucuuuauau uccaua    ugg a
 |||| |||||||||||||||| ||||||    ||| g
 cucu UGUAUGAAGAAAUGUA AGGUau    acc u
-    A                -      cgua   g 

>xtr-mir-1a-1 (-32.04)   [xtr-miR-1a:53-73]

a    uuu                     ac     ugaaca 
 ccug   ggaguacauacuucuuuaugu  ccaua      u
 ||||   |||||||||||||||||||||  |||||       
 ggac   uuuuAUGUAUGAAGAAAUGUA  GGUau      a
-    uau                     -A     cguaac 

>xtr-mir-7-1 (-39.59)   [xtr-miR-7:23-44]

--    u  -      a  u        A     A       U      uuuagau 
  ugga gu ugguuu gu cugugUGG AGACU GUGAUUU GUUGuu       a
  |||| || |||||| || |||||||| ||||| ||||||| ||||||        
  aucu cg accaga ca gguauacc ucuga cgcuaaa caacag       a
ac    c  u      -  c        g     -       -      uuacaac 

>xtr-mir-7-3 (-34.60)   [xtr-miR-7:12-33]

--     u   uu    A     G      U       -uu    a 
  cuggg cgg  UGGA GACUA UGAUUU GUUGuuu   auaa a
  ||||| |||  |||| ||||| |||||| |||||||   ||||  
  gaccc guc  accu cugau gcuaaa cgacaaa   uguu g
ag     c   uc    -     -      -       cac    u 

>xtr-mir-7-2 (-35.90)   [xtr-miR-7:22-43]

ga    cag    -a u  u  U  A     A       U     --     gc 
  ggug   gcug  c cu ug GG AGACU GUGAUUU GUUGu  uguaa  c
  ||||   ||||  | || || || ||||| ||||||| |||||  |||||   
  cuau   cgac  g ga ac cc ucuga cacugaa caaca  acguu  u
-a    -aa    cc u  c  u  g     -       -     gu     au 

>xtr-mir-9a-1 (-42.20)   [xtr-miR-9a:15-37] [xtr-miR-9a*:55-75]

-       guug   UC               G      u uug 
 gggguug    uua  UUUGGUUAUCUAGCU UAUGAg g   u
 |||||||    |||  ||||||||||||||| |||||| |    
 ccccaau    aaU  AAGCCAAUAGAUCGA AUacuu c   c
a       -aaa   GA               A      c uaa 

>xtr-mir-9a-2 (-36.60)   [xtr-miR-9a:15-37] [xtr-miR-9a*:53-73]

g    ug   g   UC               G      ugua 
 gaag  guu uua  UUUGGUUAUCUAGCU UAUGAg    u
 ||||  ||| |||  ||||||||||||||| ||||||     
 cuuc  caa aaU  AAGCCAAUAGAUCGA AUacuu    u
-    cu   a   GA               A      uugg 

>xtr-mir-9b (-22.10)   [xtr-miR-9b:8-30] [xtr-miR-9b*:46-66]

--    c  UC       AC      G     g   a 
  guuu ug  UUUGGUU  CUAGCU UAUGA uau a
  |||| ||  |||||||  |||||| ||||| ||| c
  caaa aU  AAGCCAA  GAUCGA AUacu gua u
ac    u  GC       CA      A     -   a 

>xtr-mir-10a (-43.80)   [xtr-miR-10a:22-44]

ga    cc    cu        A    G    UC          ---   gc 
  uuug  uguc  cuguaugU CCCU UAGA  CGAAUUUGUG   uga  g
  ||||  ||||  |||||||| |||| ||||  ||||||||||   |||   
  aaac  acag  gacguaua gggg gucu  gcuuaaacac   acu  c
gc    --    uu        -    g    gu          uau   aa 

>xtr-mir-10b (-41.40)   [xtr-miR-10b:16-37]

aa     u        A    G     C          -ug  u 
  cguug cuauaugU CCCU UAGAA CGAAUUUGUg   gu c
  ||||| |||||||| |||| ||||| ||||||||||   ||  
  guagc gguauaua gggg aucuu gcuuagacac   ca g
ac     u        -    g     a          uga  u 

>xtr-mir-10c (-31.10)   [xtr-miR-10c:7-28]

--       A    G    AU          ugagu 
  uauaugC CCCU UAGA  CGAAUUUGUg     u
  ||||||| |||| ||||  ||||||||||      
  guauaug gggg aucu  gcuuagacac     c
gg       -    g    cu          caagu 

>xtr-mir-15a (-30.94)   [xtr-miR-15a:14-35]

     acguaaa UA        UA          gg  a 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu c
|||||       |  ||||||||  ||||||||||  || a
ggaac       c  cgucgugu  uaccggacgu  ag c
     acaaaac gc        ca          gg  a 

>xtr-mir-15b (-25.70)   [xtr-miR-15b:16-37]

ug      agaa   U       C UC      UGCAug      
  uccuaa    gug AGCAGCA A  AUGAUU      cugua 
  ||||||    ||| ||||||| |  ||||||      |||| u
  aggguu    uac ucgucgu u  uacuaa      gauau 
aa      auag   u       u uu      -ucuua      

>xtr-mir-16c (-26.20)   [xtr-miR-16c:3-24]

--uu        -C    A        -uucau  c 
    UAGCAGCA  GUAA UACUGGAG      ga c
    ||||||||  |||| ||||||||      || a
    aucgucgu  cauu augaccuc      cu u
uuau        uu    -        ucacgu  a 

>xtr-mir-16a (-40.20)   [xtr-miR-16a:14-35]

--      ag c            -  A        UG  a 
  gccagc  u cuuUAGCAGCAC GU AAUAUUGG  uu a
  ||||||  | |||||||||||| || ||||||||  || a
  cgguug  a gagaucgucgug ca uuauaacc  gg a
uc      ga u            u  a        cu  u 

>xtr-mir-17 (-33.10)   [xtr-miR-17-5p:15-38] [xtr-miR-17-3p:54-73]

     ga       -CA        A  G     G   U a   a 
gucaa  guaaugu   AAGUGCUU CA UGCAG UAG g uuu a
|||||  |||||||   |||||||| || ||||| ||| | |||  
caguu  uauuacg   UUCACGGA GU ACGUC Auc c aag c
     -a       aUG        A  G     -   - -   a 

>xtr-mir-19a (-33.30)   [xtr-miR-19a:49-71]

g   u  u                 --      ---    ag 
 cag cu cuguuaguuuugcauag  uugcac   uaca  a
 ||| || |||||||||||||||||  ||||||   ||||  a
 guc ga gguAGUCAAAACGUAUC  AACGUG   augu  a
-   c  c                 UA      Uug    aa 

>xtr-mir-19b-2 (-34.00)   [xtr-miR-19b:49-71]

-u                 -  -       ------    uug 
  ucaugguuaguuuugca gg uuugcau      ccag   u
  ||||||||||||||||| || |||||||      ||||    
  gguauuAGUCAAAACGU CC AAACGUG      gguc   u
ac                 A  U       Ucacuc    uuc 

>xtr-mir-23a-2 (-35.70)   [xtr-miR-23a:52-72]

cu u       a   --          a       ggaaa      
  g ggcuggu gga  uuccuggcag gugauuu     uguau 
  | ||||||| |||  |||||||||| |||||||     |||| g
  c cugacua CCU  AGGGACCGUU CACUAaa     acaug 
-g c       a   UU          A       -----      

>xtr-mir-26-1 (-44.80)   [xtr-miR-26:14-34]

       g     UU         C  GA        uucc 
ggcugcu ccugg  CAAGUAAUC AG  UAGGCugu    u
||||||| |||||  ||||||||| ||  ||||||||    c
ucgauga ggacu  guucauuag uc  auccggca    a
       a     uu         u  uc        cgaa 

>xtr-mir-26-2 (-33.62)   [xtr-miR-26:12-32]

ug   g  c cU          C    U      uaaug 
  ggc cu g  UCAAGUAAUC AGGA AGGCug     u
  ||| || |  |||||||||| |||| ||||||     c
  ccg ga c  gguucauuag ucuu uccgac     u
-a   a  c ag          c    u      ugucc 

>xtr-mir-27a (-30.90)   [xtr-miR-27a:51-71]

-c    g cca          gu          -c   ca 
  ggcg c   gggcuuagcu  auugugagca  ugu  c
  |||| |   ||||||||||  ||||||||||  |||  u
  ccgC G   CUUGAAUCGG  UGACACUUgu  acg  c
cu    - --C          --          cc   cu 

>xtr-mir-27b (-50.90)   [xtr-miR-27b:61-81]

-a       acca                  auug        u  uug 
  ccuuucu    aggugcagagcuuagcug    gugaacag ga   a
  |||||||    ||||||||||||||||||    |||||||| ||   u
  ggagaga    uccaCGUCUUGAAUCGGU    CACUUguu cu   u
cg       --ag                  --GA        u  ccc 

>xtr-mir-29d (-35.72)   [xtr-miR-29d:49-71]

uc    g                 gu      uuaac 
  agga gcugguuucauguggug  uuagau     u
  |||| |||||||||||||||||  ||||||     g
  ucCU UGACUAAAGUAUACCAC  GAUcug     c
au    G                 --      uaaca 

>xtr-mir-29b (-31.00)   [xtr-miR-29b:51-73]

-   cg   -         uu      a  u    u  ucc 
 ucc  gaa gcugguuuc  guggug cu agau ua   a
 |||  ||| |||||||||  |||||| || |||| ||    
 agg  cUU UGACUAAAG  UACCAC GA Ucua gu   u
g   au   G         UU      -  -    c  cgc 

>xtr-mir-30a (-33.60)   [xtr-miR-30a-5p:6-27] [xtr-miR-30a-3p:47-68]

   a           CUC           g gaag 
gcg cUGUAAACAUC   GACUGGAAGcu u    c
||| |||||||||||   ||||||||||| |    a
cgu GACGUUUGUAG   CUGACUUUCgg a    g
   C           --A           g aguu 

>xtr-mir-30b (-33.30)   [xtr-miR-30b:12-33]

gu       uaU          UA       C   uaug 
  auuaguc   GUAAACAUCC  CACUCAG Ucg    u
  |||||||   ||||||||||  ||||||| |||    a
  uagucag   cguuuguggg  guggguc agu    u
uc       cuc          gg       -   ccaa 

>xtr-mir-30c-1 (-40.40)   [xtr-miR-30c:17-39]

a     ca    u auU           ACA        ug gaa 
 ccaug  gcag g   GUAAACAUCCU   CUCUCAGC  u   c
 |||||  |||| |   |||||||||||   ||||||||  |   a
 gguac  cguc c   cauuuguggga   gagggucg  g   u
a     --    c ccu           --a        gu gaa 

>xtr-mir-34a (-37.70)   [xtr-miR-34a:16-38]

-c    -  ug     uU        C  A            gg acg 
  ugug ag  uuucu  GGCAGUGU UU GCUGGUUGUUgu  c   u
  |||| ||  |||||  |||||||| || ||||||||||||  |    
  acac uc  gaaga  ccgucaua aa cgacuaacgaug  g   u
uu    g  uu     uc        u  a            aa aua 

>xtr-mir-34b-2 (-20.20)   [xtr-miR-34b:3-25]

--uuCA  C   G       C        uuaua 
      GG AGU UAGUUAG UGAUUGug     u
      || ||| ||||||| ||||||||      
      cc uca aucgauc acuaacgu     c
aaaaua  a   a       -        uuaaa 

>xtr-mir-34b-4 (-20.20)   [xtr-miR-34b:3-25]

--uuCA  C   G       C        uuaua 
      GG AGU UAGUUAG UGAUUGug     u
      || ||| ||||||| ||||||||      
      cc uca aucgauc acuaacgu     c
aaaaua  a   a       -        uuaaa 

>xtr-mir-92a-2 (-28.70)   [xtr-miR-92a:46-66]

  c    ug   g     uu  u   c    guaug 
uc ucug  ggu gggau  gu gca uacu     u
|| ||||  ||| |||||  || ||| ||||      
ag gggu  CCG CCCUG  CA CGU AUga     a
  u    GU   G     UU  -   U    aaagu 

>xtr-mir-98 (-45.10)   [xtr-miR-98:17-38]

uc    -cu  u    aU                 U    ----------      uuu 
  ugcc   cu cagg  GAGGUAGUAAGUUGUAU GUUg          uggggg   u
  ||||   || ||||  ||||||||||||||||| ||||          ||||||    
  augg   ga gucc  uuccgucauucgacaua caau          accccu   u
ua    uac  c    -c                 u    agaggauuaa      uua 

>xtr-mir-99 (-30.60)   [xtr-miR-99:8-29]

ua     A         UC   U    U  ug  u 
  acaua ACCCGUAGA  CGA CUUG Gg  aa u
  ||||| |||||||||  ||| |||| ||  ||  
  ugugu uggguaucu  gcu gaac uc  uu c
ac     c         uu   c    -  gu  c 

>xtr-mir-106 (-28.30)   [xtr-miR-106:4-27]

--    -A          A      G   Aau 
  ugcA  AAGUGCUUAU GUGCAG UAG   u
  ||||  |||||||||| |||||| |||   u
  acgu  uucacgaaua cacguc auc   a
cu    cc          c      -   caa 

>xtr-mir-107 (-26.80)   [xtr-miR-107:46-68]

cu     --c    u  u           c   u   a 
  gcuuu   agcu cu uacaguguugc uug ggc u
  |||||   |||| || ||||||||||| ||| ||| g
  cgaaA   UCGG GA AUGUUACGACG Aac uug g
-a     CUA    -  C           -   -   a 

>xtr-mir-122 (-31.30)   [xtr-miR-122:7-29]

-g    aUGG       C           --U  c 
  agcu    AGUGUGA AAUGGUGUUUG   gu a
  ||||    ||||||| |||||||||||   ||  
  ucga    ucacacu uuaccgcaaac   cg g
ca    guaa       a           uau  a 

>xtr-mir-125b-1 (-35.50)   [xtr-miR-125b:15-36]

u    cc   u  -a    U    C           -  g    g 
 gcac  cuc ca  UCCC GAGA CCUAACUUGUG Au uuua c
 ||||  ||| ||  |||| |||| ||||||||||| || ||||  
 cgug  gag gu  aggg uucu ggauugggcac ua aaau u
-    uu   u  cg    -    c           c  a    u 

>xtr-mir-125b-2 (-39.73)   [xtr-miR-125b:13-34]

ga   uu     UC  UG   C            ggauuuu 
  cuu  ccuag  CC  AGA CCUAACUUGUGA       u
  |||  |||||  ||  ||| ||||||||||||       u
  gag  ggauc  gg  ucu ggauugaacacu       a
gg   gc     ca  gu   c            aacaacg 

>xtr-mir-126 (-33.40)   [xtr-miR-126*:8-28] [xtr-miR-126:45-65]

gg                U       C cug  uc 
  cugugCAUUAUUACUU UGGUACG G   ug  a
  |||||||||||||||| ||||||| |   ||   
  gacgCGUAAUAAUGAG GCCAUGC c   ac  c
--                U       U -aa  ua 

>xtr-mir-128-2 (-32.40)   [xtr-miR-128:51-72]

gu    cu    c        uua      aa    g gag 
  gcag  ggaa gggggccg   cacugu  gaga u   u
  ||||  |||| ||||||||   ||||||  |||| |    
  uguc  ucUU UCUCUGGC   GUGACA  CUcu g   a
--    au    U        CAA      --    g aug 

>xtr-mir-129-1 (-41.90)   [xtr-miR-129:14-34]

-       u     -       C   CU      G   ua  uaa 
 guccuuc caaau CUUUUUG GGU  GGGCUU Cug  ug   a
 ||||||| ||||| ||||||| |||  |||||| |||  ||    
 cgggagg guuua gaaaaac cca  cccgaa ggc  au   u
g       c     c       c   uu      g   cg  cca 

>xtr-mir-129-2 (-25.70)   [xtr-miR-129:9-29]

--  u    -g       C  -UCU      G   --uu  ca 
  uc caaa  CUUUUUG GG    GGGCUU Cug    cu  a
  || ||||  ||||||| ||    |||||| |||    ||  u
  ag guuu  gaaaaac cc    cccgaa gac    ga  c
gg  c    aa       -  uauu      g   cuau  aa 

>xtr-mir-130a (-37.80)   [xtr-miR-130a:53-74]

--   u             u          a  -----a   gu 
  cug ccagugcccuuuu auguuguacu cu      gug  c
  ||| ||||||||||||| |||||||||| ||      |||   
  gac gguUACGGGAAAA UGUAACGUGA ga      cac  a
gg   c             U          C  aaaaaa   ac 

>xtr-mir-130c (-25.70)   [xtr-miR-130c:45-66]

au   ug        uc         a    aau 
  ccg  gcccuuuu  uguuguacu cugg   u
  |||  ||||||||  ||||||||| ||||   u
  ggu  CGGGAAAA  AUAACGUGA gauu   g
uc   UA        UU         C    aau 

>xtr-mir-130b (-23.60)   [xtr-miR-130b:48-69]

cc c    ca       cc         a  g  gca 
  g cuga  cucuuuc  uguugcacu cu ug   g
  | ||||  |||||||  ||||||||| || ||    
  c gacU  GGGAAAG  GUAACGUGA ga au   u
gu u    AC       UA         C  a  aag 

>xtr-mir-132 (-43.30)   [xtr-miR-132:52-73]

cu    --  a    a         u            ---   g 
  gucu  cc gggc accguggcu uagauuguuacu   gua u
  ||||  || |||| ||||||||| ||||||||||||   |||  
  uaga  gg cucG UGGUACCGA AUCUGACAAUgg   cgu u
cg    ac  g    C         C            uua   c 

>xtr-mir-133c (-33.40)   [xtr-miR-133c:52-73]

--     uuu   aa       aa  u  a        aacug 
  aaugc   gcu  agcuggu  aa gg accaaauc     u
  |||||   |||  |||||||  || || ||||||||      
  uuacg   cga  UCGACCA  UU CC UGGUUuag     u
ag     ugu   CG       AC  C  C        guaag 

>xtr-mir-133d (-37.92)   [xtr-miR-133d:48-69]

- ug            -   aa   a   c   aaccc 
 c  guugcggcuggu gaa  gga cca auc     a
 |  |||||||||||| |||  ||| ||| |||     g
 g  caaCGCCGACCA CUU  CCU GGU uag     a
u gu            A   CC   -   U   gaaaa 

>xtr-mir-133b (-33.60)   [xtr-miR-133b:47-67]

--    u         ca  c  a      u  g   u 
  cugc auggcuggu  aa gg accaag cc ucu c
  |||| |||||||||  || || |||||| || ||| c
  gacg uAUCGACCA  UU CC UGGUUu gg aga u
au    u         AC  C  C      -  -   u 

>xtr-mir-135-1 (-40.60)   [xtr-miR-135:23-45]

a   aaa     ugug                U            -ua  a 
 gau   uucac    guguuuUAUGGCUUUU AUUCCUAUGUGA   gu a
 |||   |||||    |||||||||||||||| ||||||||||||   ||  
 cug   aagug    cauaaaguaccgaagg uagggauguacu   ua u
a   -aa     -uua                -            cug  a 

>xtr-mir-138 (-45.92)   [xtr-miR-138:15-31]

cg   c        AG             UCa      gacca 
  gug ggagcagc  CUGGUGUUGUGAA   ggccgu     c
  ||| ||||||||  |||||||||||||   ||||||     u
  cac cuucguug  gaccacaacacuu   ucggca     c
--   u        -g             -ca      aaaga 

>xtr-mir-139 (-30.70)   [xtr-miR-139:6-23]

ug       -   U  A            - aua 
  uauUCUA CAG GC UGUGUCUccagu c   u
  ||||||| ||| || |||||||||||| |    
  auaaggu guc cg acauagggguca g   a
ca       u   u  -            c gag 

>xtr-mir-140 (-53.90)   [xtr-miR-140:19-39]

cc             -c  A             A       uu   uc 
  cucucuguguccu  cc GUGGUUUUACCCU UGGUAGg  acg  a
  |||||||||||||  || ||||||||||||| |||||||  |||   
  gaggggcauagga  gg caccaagauggga accaucu  ugu  g
uc             ca  -             c       --   cg 

>xtr-mir-142-1 (-39.70)   [xtr-miR-142-5p:14-33] [xtr-miR-142-3p:51-73]

--       gc  c           A         u  aca ga 
  cagugca  ca cCAUAAAGUAG AAGCACUAC ag   g  c
  |||||||  || ||||||||||| ||||||||| ||   |  u
  gucaugu  gu GGUAUUUCAUC UUUGUGAUG Uc   c  g
gg       ga  A           C         -  --g aa 

>xtr-mir-142-2 (-39.70)   [xtr-miR-142-5p:14-33] [xtr-miR-142-3p:51-73]

--       gc  c           A         u  aca ga 
  cagugca  ca cCAUAAAGUAG AAGCACUAC ag   g  c
  |||||||  || ||||||||||| ||||||||| ||   |  u
  gucaugu  gu GGUAUUUCAUC UUUGUGAUG Uc   c  g
gg       ga  A           C         -  --g aa 

>xtr-mir-146 (-31.80)   [xtr-miR-146:18-39]

--  a  a u   u    u  A       AUU         guua 
  ca ug g ucu agcu UG GAACUGA   CCAUAGGUU    g
  || || | ||| |||| || |||||||   |||||||||    a
  gu ac c agg ucga ac cuugauu   gguauccag    g
cg  c  c u   u    u  -       cgu         auug 

>xtr-mir-148b (-36.12)   [xtr-miR-148b:60-81]

ug  -  ac   g       ug         u  a    cc    gugag 
  ag ga  agc uuugagg  aaguucugu au cacu  ggcu     u
  || ||  ||| |||||||  ||||||||| || ||||  ||||     a
  uc cu  ucg gagcucU  UUCAAGACA UA GUGA  CUga     a
-a  a  --   g       GU         C  C    --    aggug 

>xtr-mir-150 (-27.80)   [xtr-miR-150:4-25]

--  c  UC   A  C            gaua 
  cu UC  CCA CC UUGUACCAGAGu    a
  || ||  ||| || ||||||||||||     
  ga ag  ggu gg gacauggucuca    u
ag  a  uc   a  a            aggg 

>xtr-mir-153-1 (-41.70)   [xtr-miR-153:53-72]

ca  g      u  -              -       u ua  u 
  cg cugccc ug ucauuuuugugauu ugcagcu g  au u
  || |||||| || |||||||||||||| ||||||| |  ||  
  gu gacggg ac AGUGAAAACACUGA ACGUUga c  ug u
gg  g      u  u              U       - uc  g 

>xtr-mir-155 (-23.30)   [xtr-miR-155:3-24]

-----uaU         U    A        uu uaa 
        UAAUGCUAA CGUG UAGGGGuu  u   u
        ||||||||| |||| ||||||||  |    
        auuacgauu guac auccucag  a   a
guacuauu         -    -        uu uac 

>xtr-mir-181b-1 (-29.40)   [xtr-miR-181b:13-34]

aa  u    aucAA         CUG          -ga  u 
  gg caca     CAUUCAUUG   UCGGUGGGuu   gu a
  || ||||     |||||||||   ||||||||||   || a
  cc gugu     guaaguagc   agucgcucga   ca g
cc  u    -caac         --a          aca  a 

>xtr-mir-181b-2 (-31.30)   [xtr-miR-181b:14-35]

aa   -     auaAA         CU           guagu 
  ugg cugca     CAUUCAUUG  GUCGGUGGGuu     u
  ||| |||||     |||||||||  |||||||||||      
  acc gacgu     guaaguaac  uaguuacucga     u
--   a     caaac         --           aaaga 

>xtr-mir-182 (-38.10)   [xtr-miR-182:20-41] [xtr-miR-182*:64-84]

a  g   ----    u   a   U       U -G      UCA      ugag  a 
 gu gcu    ucuc ggc gug UUGGCAA G  UAGAAC   CAcugg    cu u
 || |||    |||| ||| ||| ||||||| |  ||||||   ||||||    ||  
 cg cga    aggg ccg uAU AACCGUU C  AUCUUG   GUggcc    ga g
a  a   aaua    u   g   C       - AG      ---      --ua  a 

>xtr-mir-183 (-38.74)   [xtr-miR-183:19-41]

ca  cc  -         g      --AC     GA        ugaaaa 
  uc  uc cuguucugu UAUGGC    UGGUA  AUUCACUG      c
  ||  || ||||||||| ||||||    |||||  ||||||||       
  ag  ag gacgagaca auaccg    accau  uaagugac      a
ca  aa  a         a      ggau     --        uaaaac 

>xtr-mir-184 (-30.56)   [xtr-miR-184:53-74]

c    au   uu        c      a c     uuuuca 
 cagu  cac  ccuuauca uuuucc g ccagc      u
 ||||  |||  |||||||| |||||| | |||||      g
 guca  gug  GGAAUAGU AAGAGG C GGUug      a
-    gu   UC        C      - A     ucaaac 

>xtr-mir-187 (-41.20)   [xtr-miR-187:50-70]

--    a    u      a             --   ag  u 
  uggu uacc uugguu caacacaggacau  ggg  cu a
  |||| |||| |||||| |||||||||||||  |||  || c
  accg gugg gACCGA GUUGUGUUCUGUG  ccc  gg u
aa    -    u      C             CU   aa  u 

>xtr-mir-192 (-40.80)   [xtr-miR-192:15-35]

ga   u        A  A     -          CCa ug   g 
  gug acgggccu UG CCUAU GAAUUGACAG   g  gau u
  ||| |||||||| || ||||| ||||||||||   |  ||| g
  cac ugcuugga ac ggaug cuuaacuguc   c  cug a
uc   c        c  c     u          --- gu   a 

>xtr-mir-193 (-39.20)   [xtr-miR-193:51-74]

g   -        u          g    g  a  a c   u 
 ugg uuucggag cgggauuuug gggc ag ug g uaa g
 ||| |||||||| |||||||||| |||| || || | |||  
 acu aagguCUU GCCCUGAAAC CCCG UC Ac c auu a
-   g        C          G    G  A  - u   u 

>xtr-mir-194-1 (-38.70)   [xtr-miR-194:15-36]

ua    g       U         A      G    cuug 
  gugu uaucagg GUAACAGCA CUCCAU UGGA    u
  |||| ||||||| ||||||||| |||||| ||||    c
  cacg guaguuu cauugucgu gaggug accu    c
--    g       u         a      -    uaug 

>xtr-mir-194-2 (-35.70)   [xtr-miR-194:15-36]

-u     u   a  cU         A      G     --g  g 
  gaugc cau ac  GUAACAGCA CUCCAU UGGAa   ua a
  ||||| ||| ||  ||||||||| |||||| |||||   ||  
  cuaug gua ug  uauugucgu gaggug gccuu   au u
au     u   a  uc         a      -     aua  a 

>xtr-mir-199a (-41.10)   [xtr-miR-199a:19-41] [xtr-miR-199a*:57-78]

aa aa  -     c   gcC       U        C   ---U   ga 
  g  cc ugcuc guc   CCAGUGU CAGACUAC UGU    Cag  c
  |  || ||||| |||   ||||||| |||||||| |||    |||  a
  c  gg acggg cag   GGUUACA GUCUGAUG ACA    guc  a
ga ag  u     u   aUU       C        -   Uguu   gu 

>xtr-mir-202-1 (-38.40)   [xtr-miR-202*:14-35] [xtr-miR-202:51-72]

--   -     u  u           -A   A        aaaa 
  cuc gcugu cc uUUUCCUAUGC  UAU CCUCUUUg    a
  ||| ||||| || |||||||||||  ||| ||||||||    u
  gag cgacg gg AAAAGGGUACG  AUA GGGGAaau    g
cc   u     c  u           GG   C        guaa 

>xtr-mir-202-2 (-38.40)   [xtr-miR-202*:14-35] [xtr-miR-202:51-72]

--   -     u  u           -A   A        aaaa 
  cuc gcugu cc uUUUCCUAUGC  UAU CCUCUUUg    a
  ||| ||||| || |||||||||||  ||| ||||||||    u
  gag cgacg gg AAAAGGGUACG  AUA GGGGAaau    a
cc   u     c  u           GG   C        guaa 

>xtr-mir-205b (-22.80)   [xtr-miR-205b:9-30]

ug   c  UC      U    -C   UC   ug aa 
  cug ug  CUUCAU CCAC  GGA  CUG  u  a
  ||| ||  |||||| ||||  |||  |||  |  u
  gau ac  gaagua ggug  ccu  gac  a  a
--   u  gu      c    ac   ua   cu au 

>xtr-mir-206 (-32.30)   [xtr-miR-206:45-66]

                      ac     uga  ua 
gaggucacaugcuucuuuauau  ccaua   ac  c
||||||||||||||||||||||  |||||   ||   
cuucGGUGUGUGAAGGAAUGUA  GGUau   ug  a
                      -A     ---  uu 

>xtr-mir-210 (-42.60)   [xtr-miR-210:56-77]

-   -      a   c    a   acua       u  c  ugcuc 
 ucc agaugc ggu agcc cug    acgcaca ug gc     c
 ||| |||||| ||| |||| |||    ||||||| || ||      
 agg ucuacg ccA UCGG GAC    UGCGUGU ac cg     u
a   a      a   A    C   AGUG       C  -  uaaaa 

>xtr-mir-181a-1 (-32.50)   [xtr-miR-181a:14-36] [xtr-miR-181a-1*:54-75]

--   --ua  u     A   U      CU       A     g au 
  ggc    cu uagug ACA UCAACG  GUCGGUG GUuug u  c
  |||    || ||||| ||| ||||||  ||||||| ||||| |  u
  ccg    gg auuAC UGU AGUUGC  UAGCUAC CAaac g  a
ga   uaac  c     A   C      --       -     g aa 

>xtr-mir-181a-2 (-34.09)   [xtr-miR-181a:16-38] [xtr-miR-181a-2*:61-82]

uu           a A   U      CU       A     agaaagu 
  gagggcuucag g ACA UCAACG  GUCGGUG GUuug       g
  ||||||||||| | ||| ||||||  ||||||| |||||        
  uuuucggaguc C UGU AGUUGC  CGGCUAC CAaau       u
ac           C A   C      --       -     auaaaaa 

>xtr-mir-214 (-67.62)   [xtr-miR-214:68-88]

uu      aagga           u          aca            aacau 
  ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
  ||||||     ||||||||||| ||||||||||   ||||||||||||     c
  ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     u
-u      -----           u          CAC            cacuc 

>xtr-mir-215 (-29.86)   [xtr-miR-215:18-38]

--   -u     c     ggA  A     -          C  cuucca 
  aac  gguaa cagga   UG CCUAU GAAAUGACAG Ca      u
  |||  ||||| |||||   || ||||| |||||||||| ||      a
  uug  ucguu gucuu   ac ggaug cuuuacuguc gu      c
ag   uu     a     aua  c     u          u  acaaac 

>xtr-mir-216 (-38.50)   [xtr-miR-216:17-37]

ug      aa    cu         CU   A        -c    a 
  gcugug  uugg  UAAUCUCAG  GGC ACUGUGag  aguu a
  ||||||  ||||  |||||||||  ||| ||||||||  ||||  
  cgacac  aauc  auuaggguc  cug ugacacuc  uuaa u
aa      -a    au         -u   g        ua    a 

>xtr-mir-217 (-35.80)   [xtr-miR-217:14-37]

uu       u  a  C     C          U  ---A     
  gauguug ag UA UGCAU AGGAACUGAU GG    Uccc 
  ||||||| || || ||||| |||||||||| ||    ||| a
  cuacggc uc gu acgua uccuugacua cc    aggg 
au       u  c  c     a          -  gacg     

>xtr-mir-218-1 (-38.15)   [xtr-miR-218:24-44]

ug   ac   --   a   u      U         CU        gguugugag 
  gua  aag  gcg gau uucugU GUGCUUGAU  AACCAUGU         g
  |||  |||  ||| ||| |||||| |||||||||  ||||||||          
  cau  uuc  cgc cug aaggua cacgaacug  uugguaca         u
-a   cu   ga   a   c      c         uc        aaaugagua 

>xtr-mir-218-2 (-37.60)   [xtr-miR-218:12-32]

gg        uUU         CU        ------g   ga 
  gguuuucc   GUGCUUGAU  AACCAUGU       gua  a
  ||||||||   |||||||||  ||||||||       |||   
  ccggaagg   cacgaacug  uugguaca       cau  c
ca        uac         uc        aguuaua   aa 

>xtr-mir-219 (-34.50)   [xtr-miR-219:17-37]

au   g u  c   cuU   U     AA           uucca   g 
  gga c cu gcc   GAU GUCCA  CGCAAUUCUug     aua a
  ||| | || |||   ||| |||||  |||||||||||     |||  
  ccu g gg cgg   cua caggu  guguuaagaac     uau a
--   a u  u   ugu   -     cc           cgaac   a 

>xtr-mir-222 (-23.20)   [xtr-miR-222:39-62]

----c        au   -     auc   uau 
     gcucagua  cag uguag   cug   a
     ||||||||  ||| |||||   |||   u
     UGGGUCAU  GUC ACAUC   gac   c
auCUC        CG   U     GAc   ugu 

>xtr-mir-223 (-36.80)   [xtr-miR-223:55-75]

a    gg    ga u              gagucc       aau 
 gugu  cacu  g guauuugacaagcu      gacacuc   g
 ||||  ||||  | ||||||||||||||      |||||||   a
 cacg  guga  C CAUAAACUGUUUGA      CUGUgag   g
-    ga    aC C              ------       aca 

>xtr-mir-301-1 (-30.70)   [xtr-miR-301:50-72]

     aa   --     c    ---u          ----a       
cugcu  ugu  gugcu ugac    uuauugcacu     cuguac 
|||||  |||  ||||| ||||    ||||||||||     ||||| u
gacga  acg  uaCGA ACUG    GAUAACGUGA     gacaua 
     --   uc     A    UUAU          Cgauc       

>xtr-mir-301-2 (-26.90)   [xtr-miR-301:44-66]

--   u    c       ---        a  ----g  a 
  gaa ugcu ugacagu   guugcacu cu     ug u
  ||| |||| |||||||   |||||||| ||     ||  
  cuu aCGA ACUGUUA   UAACGUGA ga     ac c
ua   u    A       UGA        C  aguaa  u 

>xtr-mir-302 (-23.72)   [xtr-miR-302:47-69]

cc      cuuu        u      -   auguc 
  ccacua    aacauugg guacuu ucu     u
  ||||||    |||||||| |||||| |||     u
  GGUGAU    UUGUAACC CGUGAA ggg     u
--      ---U        U      U   aaaaa 

>xtr-mir-365-1 (-37.40)   [xtr-miR-365:55-76]

cc       a        ac           -----gau    uu 
  gcaggga aaugaggg  uuuugggggca        gugu  c
  ||||||| ||||||||  |||||||||||        ||||  a
  cguucuu uUAUUCCU  AAAAUCCCCGU        caca  c
-a       g        -A           AAUaccau    uu 

>xtr-mir-367 (-22.10)   [xtr-miR-367:42-63]

          c   -      ac    u  ua 
uuacuguugc uau gugcaa  ucug gc  u
|||||||||| ||| ||||||  |||| ||   
AGUGGUAACG AUG CACGUU  Agau ug  a
          -   U      -A    c  uu 

>xtr-mir-383 (-29.50)   [xtr-miR-383:7-28]

   -c  A      AA    A        -      a 
cuc  uc GAUCAG  GGUG UUGUGGCU uuuagu g
|||  || ||||||  |||| |||||||| ||||||  
gag  ag cugguc  ucac gacaccga gaauua a
   aa  a      cg    -        c      u 

>xtr-mir-425 (-33.60)   [xtr-miR-425-5p:8-30]

--  c     A         CAC     U  A  - gaaa 
  gc uuggA UGACACGAU   UCCCG UG gc c    c
  || ||||| |||||||||   ||||| || || |     
  cg aaccu gcugugcua   agggc ac cg g    u
cu  a     c         -ua     u  -  c acac 

>xtr-mir-455 (-42.20)   [xtr-miR-455:16-37]

-u  c   c ug  g          U      A   C   gaa 
  cc ugg g  ag gUAUGUGCCC UGGACU CAU Gug   g
  || ||| |  || |||||||||| |||||| ||| |||    
  gg acu c  uc cauauacggg accuga gua cac   c
uu  a   c gu  a          u      c   c   gac 

>xtr-mir-489 (-41.00)   [xtr-miR-489:51-73]

 ug ug c    ug             c       a       
g  g  g uuag  gucguauguauga gucauuu cuggau 
|  |  | ||||  ||||||||||||| ||||||| ||||| u
c  c  c aauC  CGGCAUGUAUACU CAGUGAg gauuuu 
 gu gu a    GU             A       -       

>xtr-mir-499 (-36.96)   [xtr-miR-499:16-38]

gu   a c        UA       C           Guuaaa 
  gag g gaggcagU  AGACUUG AGUGAUGUUUA      a
  ||| | ||||||||  ||||||| |||||||||||      u
  cuc c cuucguca  ucugaau ucacuacaagu      c
--   c u        ug       u           acuuuu 

>xtr-let-7c (-40.50)   [xtr-let-7c:16-37]

u   u  a      uU   G   U            Uuagaa    a    
 gug gc uccagg  GAG UAG AGGUUGUAUGGU      ugac ccc 
 ||| || ||||||  ||| ||| ||||||||||||      |||| || u
 cac cg agguuc  uuc auc uccaacauguca      auug ggg 
u   u  -      cu   g   u            ------    a    

>xtr-let-7f (-40.50)   [xtr-let-7f:8-29]

u      U   GU                ----------     gu 
 gcagga GAG  AGUAGAUUGUAUAGUU          uuggg  c
 |||||| |||  ||||||||||||||||          |||||   
 cguccu uuc  ucauuugacauaucaa          agccc  a
g      -   ug                uagagggucu     ac 

>xtr-let-7g (-38.80)   [xtr-let-7g:4-24]

--   U        U            uaagg    g     cca 
  ggc GAGGUAGU GUUUGUACAGUu     gucu ugaca   c
  ||| |||||||| ||||||||||||     |||| |||||    
  ccg uuccguca cggacaugucaa     uaga guugu   c
au   -        c            -----    g     cuc 

>xtr-let-7i (-42.90)   [xtr-let-7i:6-26]

     U                 U   --------  u     u u 
cuggc GAGGUAGUAGUUUGUGC GUu        gg cgggu g g
||||| ||||||||||||||||| |||        || ||||| | a
gaucg uuccgucaucgaacgcg caa        uc gcccg c c
     -                 u   uagaggug  -     u a 

>xtr-mir-1b (-21.00)   [xtr-miR-1b:42-62]

gc           u    gc     cuga  g 
  acauacuucuu auau  ccaua    au a
  ||||||||||| ||||  |||||    ||  
  UGUAUGAAGAA UGUA  GGUau    ua a
-A           U    -A     --cg  a 

>xtr-mir-9-3 (-34.50)   [xtr-miR-9:8-29] [xtr-miR-9*:48-68]

--       UC               G     gu  aa 
  guuucua  UUUGGUUAUCUAGCU UAUGa  gu  a
  |||||||  ||||||||||||||| |||||  ||   
  uaaggaU  AAGCCAAUAGAUCGA AUacu  cg  u
ac       GA               A     gc  aa 

>xtr-mir-15c (-21.80)   [xtr-miR-15c:14-35]

cuuugaggugaucUA     A  UC          gaaac 
               GCAGC CA  AUGGUUUGUA     a
               ||||| ||  ||||||||||      
               cgucg gu  uaccagacau     a
--------aguucuc     a  cu          agagg 

>xtr-mir-18a (-29.60)   [xtr-miR-18a:14-36] [xtr-miR-18a*:55-75]

gu         -  -U    U   UC   U    A   -  aa u 
  gcuuuuugu cc  AAGG GCA  UAG GCAG UAG ug  g a
  ||||||||| ||  |||| |||  ||| |||| ||| ||  | g
  ugaaaaaua gg  UUCC CGU  AUC CGUC Auc ac  u a
--         c  UC    U   GA   C    -   u  ga u 

>xtr-mir-23a-1 (-36.70)   [xtr-miR-23a:51-71]

cu     cg  gg        ag   g     uauu      
  gacag  gg  auuccugg  aug gauuu    uuggc 
  |||||  ||  ||||||||  ||| |||||    |||| a
  cuguc  CC  UAGGGACC  UAC CUAaa    aaccg 
--     aa  UU        GU   A     ---u      

>xtr-mir-24a (-28.30)   [xtr-miR-189:6-28] [xtr-miR-24a:43-64]

       G   A         UA     ucuau 
cucuuGU CCU CUGAACUGA  UCAGU     u
||||||| ||| |||||||||  |||||      
gagGACA GGA GACUUGACU  GGUca     u
       A   C         -C     cacac 

>xtr-mir-24b (-27.30)   [xtr-miR-24b:45-65]

    c  a   a         uaa    u  uua 
cucc gu ccu cugggcuga   ucag gg   u
|||| || ||| |||||||||   |||| ||   a
gagG CA GGA GACUUGACU   GGUc cc   u
    A  -   C         --C    c  uuc 

>xtr-mir-29a (-33.30)   [xtr-miR-29a:53-73]

-     u   aagg            uuc       c    ucu 
 acccu uua    augacugauuuc   ugguguu agag   u
 ||||| |||    ||||||||||||   ||||||| ||||   u
 ugggg agu    uaUUGGCUAAAG   ACCACGA Ucuu   u
a     u   --aa            UUU       -    uug 

>xtr-mir-30d (-33.00)   [xtr-miR-30d:11-32]

   uu  c  U         CCC           ---   ag 
agu  gu gc GUAAACAUC   GACUGGAAGcu   gug  g
|||  || || |||||||||   |||||||||||   |||   
ucg  ca cg cguuugugg   cugacuuucga   uac  c
   gc  u  u         --u           guu   gu 

>xtr-mir-92b (-30.60)   [xtr-miR-92b:48-68]

ua   a   a        uu     c     uc uuu 
  cag agg ucgggaug  gugca uguug  c   c
  ||| ||| ||||||||  ||||| |||||  |    
  guc UCC GGCCCUGC  CACGU AUaac  g   u
gc   C   -        -U     U     -c ucc 

>xtr-mir-93a (-37.10)   [xtr-miR-93a:10-31]

au      -cA                 G   c  aa 
  gggcuu   AAGUGCUGUUCGUGCAG UAG uu  u
  ||||||   ||||||||||||||||| ||| ||  a
  cccgaa   uucacggcggguacguc auc ag  a
--      ccc                 -   c  ac 

>xtr-mir-93b (-27.70)   [xtr-miR-93b:5-25]

--cuuc                 G   c  aa 
      AAGUGCUGUUCGUGCAG UAG uu  u
      ||||||||||||||||| ||| ||  a
      uucacggcggguacguc auc ag  a
gaaccc                 -   c  ac 

>xtr-mir-96 (-35.00)   [xtr-miR-96:8-30]

gg    cU         G     UU      -uu   c 
  ccug  UUGGCACUA CACAU  UUGCUu   gua a
  ||||  ||||||||| |||||  ||||||   |||  
  ggau  aaccgugau gugua  aacgag   cau u
-a    au         -     uu      uuu   a 

>xtr-mir-101a-2 (-45.30)   [xtr-miR-101a:51-72]

a       cuggc                  a    gucua 
 ggcugcc     ucaguuaucacagugcug ugcu     c
 |||||||     |||||||||||||||||| ||||      
 ccgaugg     AGUCAAUAGUGUCAUGAC AUgg     u
a       uagGA                  -    aaauc 

>xtr-mir-103-1 (-37.40)   [xtr-miR-103:52-74]

u     uu      --    u  u           c   u g a 
 ucuca  uccuuu  ggcu cu uacagugcugc uug u c u
 |||||  ||||||  |||| || ||||||||||| ||| | |  
 agagu  aggaAG  UCGG GA AUGUUACGACG Aac a g a
-     cu      UA    -  C           -   u g u 

>xtr-mir-148a (-30.40)   [xtr-miR-148a:53-74]

   u        u            --a    ua    -   aa 
uag cuuuuaaa caaaguucugug   cacu  gacu cug  u
||| |||||||| ||||||||||||   ||||  |||| |||  a
guc gaggguuu GUUUCAAGACAU   GUGA  CUga gau  u
   u        U            CAC    --    c   ag 

>xtr-mir-338-1 (-37.50)   [xtr-miR-338:48-69]

-   c    g     u   -         aau     - ga 
 guc ccug aacaa auc cugaugcug   gagug g  c
 ||| |||| ||||| ||| |||||||||   ||||| |   
 cgg ggac UUGUU UAG GACUACGAC   CUcgu c  a
a   c    G     U   U         ---     a au 

>xtr-let-7e-1 (-38.40)   [xtr-let-7e:11-32]

cc  g     U   GU          U     auugggccgcac 
  cu uggga GAG  AGUAGGUUGU UAGUU            c
  || ||||| |||  |||||||||| |||||            c
  ga auccu cuc  ucauccaaca aucaa            a
gu  a     -   ug          c     gagaggguaacc 

>xtr-let-7a (-43.60)   [xtr-let-7a:14-35]

gu          cU       U              aggauaac 
  gggcuccagg  GAGGUAG AGGUUGUAUAGUUg        a
  ||||||||||  ||||||| ||||||||||||||        c
  uucggggucc  uucuauc uccgacaugucaau        c
--          cu       c              agaggaaa 

>xtr-let-7e-2 (-41.70)   [xtr-let-7e:12-33]

--   -   ug   U   GU          U       ----------   u 
  gcc cuu  ggg GAG  AGUAGGUUGU UAGUUgu          ggg u
  ||| |||  ||| |||  |||||||||| |||||||          ||| g
  cgg gaa  ccu uuc  ucaucuaaca aucaaua          ccc c
gu   u   gu   -   ug          u       gguuugcagu   a 

>xtr-mir-16b (-28.20)   [xtr-miR-16b:14-35]

aa    uc   auU     C   UA         U --a     
  uugc  cgc   AGCAG ACG  AAUAUUGGG g   uaug 
  ||||  |||   ||||| |||  ||||||||| |   ||| a
  aacg  gug   ucguc ugu  uuaugaccc c   guau 
gg    gu   aau     a   ua         - gag     

>xtr-mir-20a (-33.30)   [xtr-miR-20a:14-36] [xtr-miR-20a*:51-71]

--   aa  ug     -A          A      G   uu uu 
  gcu  ag  gugcU  AAGUGCUUAU GUGCAG UAG  u  c
  |||  ||  |||||  |||||||||| |||||| |||  |   
  cga  uc  caugA  UUCACGAGUA UACGUC Auc  a  u
gu   --  cu     AA          A      -   uu ug 

>xtr-mir-22 (-41.10)   [xtr-miR-22*:17-37] [xtr-miR-22:57-78]

-c     c   aga             -     A      u  uguu 
  uggcc gcu   agcAGUUCUUCAG UGGCA GCUUUa gu    c
  ||||| |||   ||||||||||||| ||||| |||||| ||    c
  aucgg uga   uUGUCAAGAAGUU ACCGU CGAAau cg    u
uc     -   aag             G     -      -  uguc 

>xtr-mir-23b (-34.40)   [xtr-miR-23b:53-73]

cc  ug   c   u   --          -  c      gug   u 
  gg  ugg ugu ugg  guuccuggca ug ugauuu   agu a
  ||  ||| ||| |||  |||||||||| || ||||||   |||  
  cu  acc aca aCC  UAGGGACCGU AC ACUAaa   uua a
uc  gu   a   c   AU          U  -      --a   g 

>xtr-mir-25-1 (-41.60)   [xtr-miR-25:51-72]

     ug   a     a        a    c     g  u 
gcugg  uug caggc gagacagg gcaa ugcug ug g
|||||  ||| ||||| |||||||| |||| ||||| || c
cggcu  gac GUCUG CUCUGUUC CGUU ACgau gu c
     gu   A     G        A    -     g  u 

>xtr-mir-25-2 (-41.60)   [xtr-miR-25:51-72]

     ug   a     a        a    c     g  u 
gcugg  uug caggc gagacagg gcaa ugcug ug g
|||||  ||| ||||| |||||||| |||| ||||| || c
cggcu  gac GUCUG CUCUGUUC CGUU ACgau gu c
     gu   A     G        A    -     g  u 

>xtr-mir-27c-1 (-31.60)   [xtr-miR-27c:54-74]

cu    a a  ca          ggcu         -ggu uu 
  cuag g gg  ggacuuagcu    cugugaaca    c  g
  |||| | ||  ||||||||||    |||||||||    |   
  gguc c cC  CUUGAAUCGG    GACACUUgu    g  u
--    a c  AC          ---U         aacu ug 

>xtr-mir-27c-2 (-31.60)   [xtr-miR-27c:54-74]

cu    a a  ca          ggcu         -ggu uu 
  cuag g gg  ggacuuagcu    cugugaaca    c  g
  |||| | ||  ||||||||||    |||||||||    |   
  gguc c cC  CUUGAAUCGG    GACACUUgu    g  u
--    a c  AC          ---U         aacu ug 

>xtr-mir-29c (-35.50)   [xtr-miR-29c*:15-36] [xtr-miR-29c:56-75]

  -       cagg         C  UCU       ---Ca     u 
uc ccuuaca    aUGACCGAU UC   UGGUGUU     gaggc c
|| |||||||    ||||||||| ||   |||||||     |||||  
ag ggaaugu    uauUGGCUA AG   ACCACGA     uucug a
  u       --aa         A  UUU       Ucuac     g 

>xtr-mir-30c-2 (-32.20)   [xtr-miR-30c:14-36]

--      cagauacU       U   ACA         g  ga 
  gagaga        GUAAACA CCU   CUCUCAGCu ug  a
  ||||||        ||||||| |||   ||||||||| ||   
  cucucu        cauuugu gga   gggggucga ac  a
gu      --------       c   --a         a  au 

>xtr-mir-30e (-44.70)   [xtr-miR-30e:17-38]

gg       -    cuc           UU            ug aau 
  gcaguua cagc   UGUAAACAUCC  GACUGGAAGcug  a   a
  ||||||| ||||   |||||||||||  ||||||||||||  |    
  cgucgau gucg   acauuuguagg  cugacuuucgau  u   a
--       c    ---           --            ga agu 

>xtr-mir-31 (-37.40)   [xtr-miR-31:17-38]

cc   uucu      gA     GAU             -  gca 
  uag    agagag  GGCAA   GUUGGCAUAGCUG uu   u
  |||    ||||||  |||||   ||||||||||||| ||    
  auc    ucuuuc  ccguu   caaccguguugac aa   c
cc   -ugu      ua     auc             c  agu 

>xtr-mir-33a (-34.40)   [xtr-miR-33a:6-24]

     G          UU        ug gaua 
cugug UGCAUUGUAG  GCAUUGca  u    u
||||| ||||||||||  ||||||||  |     
gacac acgugacguc  uguaacgu  g    c
     a          cg        gu gcga 

>xtr-mir-33b (-26.90)   [xtr-miR-33b:6-24]

  c  G       UU UU         ---   ac 
cc ug UGCAUUG  G  GCAUUGcau   guc  c
|| || |||||||  |  |||||||||   |||   
gg au acgugac  c  uguaacgug   cag  u
  u  g       uu uu         uug   gu 

>xtr-mir-34b-3 (-26.60)   [xtr-miR-34b:12-34]

u   g      - A  C   G       C       --   aa 
 guu gguuuu C GG AGU UAGUUAG UGAUUGu  guu  c
 ||| |||||| | || ||| ||||||| |||||||  |||  a
 caa ucaaaa g cc uca aucgauc acuaacg  cag  u
a   a      c a  a   a       -       uu   aa 

>xtr-mir-34b-1 (-26.60)   [xtr-miR-34b:12-34]

u   g      - A  C   G       C       --   aa 
 guu gguuuu C GG AGU UAGUUAG UGAUUGu  guu  c
 ||| |||||| | || ||| ||||||| |||||||  |||  a
 caa ucaaaa g cc uca aucgauc acuaacg  cag  u
a   a      c a  a   a       -       uu   aa 

>xtr-mir-92a-1 (-36.00)   [xtr-miR-92a:49-69]

cu     u            u   u           cu 
  uucug auagguugggau ggu gcaaugcugua  a
  ||||| |||||||||||| ||| |||||||||||  u
  aggau uGUCCGGCCCUG UCA CGUUAUgaugu  u
gu     u            U   -           au 

>xtr-mir-100 (-30.90)   [xtr-miR-100:10-31]

--    c    A       G UC   A      cu ug 
  guug caua ACCCGUA A  CGA CUUGUG  g  c
  |||| |||| ||||||| |  ||| ||||||  |  c
  cggc gugu ugggcgu u  gcu gaacac  c  c
uu    u    c       g ga   c      -u uc 

>xtr-mir-101a-1 (-36.50)   [xtr-miR-101a:55-76]

gc   -a  ug  c                    cg     gugua 
  gug  ac  uc uuuuucgguuaucaugguac  gugcu     u
  |||  ||  || ||||||||||||||||||||  |||||      
  uac  ug  gg aaGAAGUCAAUAGUGUCAUG  CAUgg     a
-c   cg  gu  u                    -A     aaagu 

>xtr-mir-103-2 (-37.60)   [xtr-miR-103:50-72]

-      g      --   u  u           c   ua   u 
 cucugu cuuuca  gcu cu uacagugcugc uug  gca c
 |||||| ||||||  ||| || ||||||||||| |||  |||  
 gagacg ggaAGU  CGG GA AUGUUACGACG Aac  ugu u
a      a      AU   -  C           -   --   a 

>xtr-mir-124 (-34.50)   [xtr-miR-124:53-74]

ua  u    g     cc        a   ga        uaau 
  ag cucu acucu  guguucac gcg  ccuugauu    g
  || |||| |||||  |||||||| |||  ||||||||    u
  uc gagg ugaga  CGUAAGUG CGC  GGAAUUaa    c
ca  c    -     AC        G   AC        caua 

>xtr-mir-125a (-27.30)   [xtr-miR-125a:2-23]

--- UC   G   C     A       g aag 
   g  CCU AGA CCUUA CCUGUGa g   a
   |  ||| ||| ||||| ||||||| |    
   c  gga ucu ggagu ggacacu u   c
ggu ga   g   u     -       g aua 

>xtr-mir-128-1 (-34.80)   [xtr-miR-128:51-72]

u   c        cc   c    ag      cu      gu 
 gag ggcuggaa  ggg ccgg  cgcugu  gagagg  u
 ||| ||||||||  ||| ||||  ||||||  ||||||  u
 uuc cugacuUU  CUC GGCC  GUGACA  CUcuuu  a
c   u        UU   U    AA      --      ga 

>xtr-mir-135-2 (-47.32)   [xtr-miR-135:16-38]

-c      c  a               AU          uugcu 
  ccccug ug gguaUAUGGCUUUUU  UCCUAUGUGA     u
  |||||| || |||||||||||||||  ||||||||||     u
  ggggac ac ucguguaccgaaaga  gggauacacu     c
ca      -  g               -c          uaauc 

>xtr-mir-137-1 (-45.70)   [xtr-miR-137:59-80]

-   -cugug           ug   g           ug a     -  g 
 gcu      gcucucuucgg  acg guauucuuggg  g uaaua cg a
 |||      |||||||||||  ||| |||||||||||  | ||||| || u
 cga      ugagaggaguu  UGC CAUAAGAAUUC  U AUugu gc u
a   cuucua           GA   G           GU -     u  a 

>xtr-mir-137-2 (-45.70)   [xtr-miR-137:59-80]

-   -cugug           ug   g           ug a     -  g 
 gcu      gcucucuucgg  acg guauucuuggg  g uaaua cg a
 |||      |||||||||||  ||| |||||||||||  | ||||| || u
 cga      ugagaggaguu  UGC CAUAAGAAUUC  U AUugu gc u
a   cuucua           GA   G           GU -     u  a 

>xtr-mir-137-3 (-45.70)   [xtr-miR-137:59-80]

-   -cugug           ug   g           ug a     -  g 
 gcu      gcucucuucgg  acg guauucuuggg  g uaaua cg a
 |||      |||||||||||  ||| |||||||||||  | ||||| || u
 cga      ugagaggaguu  UGC CAUAAGAAUUC  U AUugu gc u
a   cuucua           GA   G           GU -     u  a 

>xtr-mir-143 (-45.60)   [xtr-miR-143:50-71]

ug      ag   a  g         g      u  -   g 
  ucuccc  ccc ag ugcagugcu caucuc gg uca u
  ||||||  ||| || ||||||||| |||||| || |||  
  aggggg  ggG UC AUGUCACGA GUAGAG cu agu u
ua      aa   C  G         A      U  g   g 

>xtr-mir-144 (-22.20)   [xtr-miR-144:42-62]

uu   g        a         -a    gu 
  ugg auaucauc uauacugua  guuu  u
  ||| |||||||| |||||||||  ||||   
  AUC UGUAGUAG AUAUGACAU  caga  u
--   A        -         ca    au 

>xtr-mir-145 (-43.92)   [xtr-miR-145:15-38]

a     u        UC    U  C            Ugggu 
 ccuau ccucaagG  CAGU UU CCAGGAAUCCCU     g
 ||||| ||||||||  |||| || ||||||||||||     c
 ggaug gggguucu  guca aa gguccuuagggg     u
c     u        -u    u  a            uggug 

>xtr-mir-153-2 (-40.30)   [xtr-miR-153:53-72]

a      g      -             gu       -a  aa 
 gcaguu ccagug ucauuuuugugac  ugcagcu  gu  u
 |||||| |||||| |||||||||||||  |||||||  ||  a
 ugucaa gguuau AGUGAAAACACUG  ACGUUga  cg  u
-      a      u             AU       cc  ag 

>xtr-mir-191 (-44.00)   [xtr-miR-191:15-36]

        c    aC     AA      AA       -u   g 
ggcgguag ucug  AACGG  UCCCAA  GCAGCUg  ugu a
|||||||| ||||  |||||  ||||||  |||||||  |||  
ccguuauc aggc  uugcc  aggguu  cgucgac  gua a
        u    ac     -c      ga       uu   a 

>xtr-mir-196a (-36.60)   [xtr-miR-196a:25-45]

uu  -uau c       cu      U          A        G a   cuu 
  ug    c agcugau  gugguu AGGUAGUUUC UGUUGUUG g uug   u
  ||    | |||||||  |||||| |||||||||| |||||||| | |||    
  ac    g uugacug  cauuaa uccgucaaag acaacggc c aau   u
cu  uucu c       --      u          a        g -   ucu 

>xtr-mir-196b (-37.92)   [xtr-miR-196b:16-36]

ag      -       U          A      U   cauuc 
  ccgcug ugugguu AGGUAGUUUU UGUUGU GGg     a
  |||||| ||||||| |||||||||| |||||| |||     c
  ggugac acauuaa uccgucaaag acaaca cuc     c
-g      u       u          a      u   ucuuu 

>xtr-mir-199b (-46.70)   [xtr-miR-199b:31-53]

aagaucccgagaggu g       c   ccC       UC       G      uu  ac 
               g guggucc guu   CCAGUGU  AGACUAC UGUUCg  gg  a
               | ||||||| |||   |||||||  ||||||| ||||||  ||   
               c uaccggg caa   ggucaca  ucugaug acaagu  cc  g
---------aacugg g       u   auu       ca       -      --  aa 

>xtr-mir-200a (-40.44)   [xtr-miR-200a:53-74]

u  -  -    a        -             c    uuuauu 
 gg uc cucu uggacauc uuacuagacagug ugga      u
 || || |||| |||||||| ||||||||||||| ||||       
 cc ag gaga auuUGUAG AAUGGUCUGUCAC AUcu      u
a  g  u    a        C             A    uuucua 

>xtr-mir-200b (-40.52)   [xtr-miR-200b:53-75]

-c  u        ugc    -    ug     c      uuuug 
  ug ggcgcuau   cauc uuac  ggcag auugga     u
  || ||||||||   |||| ||||  ||||| ||||||     c
  ac ccgcggua   GUAG AAUG  CCGUC UAAUcu     u
ac  c        uUA    U    GU     A      uugua 

>xtr-mir-203 (-30.20)   [xtr-miR-203:47-68]

c    -c           u    g    a     c  u 
 cugg  cgagugguucu aaca uuca caguu uc a
 ||||  ||||||||||| |||| |||| ||||| ||  
 ggcc  GUUCACCAGGA UUGU AAGU Guuaa ag u
-    ua           U    A    -     -  c 

>xtr-mir-204-2 (-37.86)   [xtr-miR-204:16-37]

au     cug     U          A     U    gagaau 
  gugac   ugggc UCCCUUUGUC UCCUA GCCU      a
  |||||   ||||| |||||||||| ||||| ||||      u
  uacug   acuug agggaaacgg agggu cggg      a
ac     uug     c          a     -    ggaagu 

>xtr-mir-204-1 (-40.12)   [xtr-miR-204:31-52]

-u     acuuc      gugaccca     U         CA    A     gagaa 
  agagg     gacauu        ugggc UCCCUUUGU  UCCU UGCCU     u
  |||||     ||||||        ||||| |||||||||  |||| |||||     g
  ucucc     uuguag        acucg agggaaacg  aggg acgga     c
gu     ----a      --------     u         ac    -     gaggu 

>xtr-mir-205a (-39.02)   [xtr-miR-205a:16-37]

cc     u   gc   C           C        ucuca 
  acgug ccu  ugU CUUCAUUCCAC GGAGUCUG     u
  ||||| |||  ||| ||||||||||| ||||||||     a
  uguac gga  aca gaagugaggug cuuuagac     c
ga     -   ga   c           a        uaaua 

>xtr-mir-208 (-32.40)   [xtr-miR-208:50-71]

uc   uc              u      ga     uuuu u 
  cuu  aacaggcaagcuuu ugcuug  uuaug    c g
  |||  |||||||||||||| ||||||  |||||    |  
  gaa  uuguuUGUUCGAAA ACGAGC  AAUAu    g u
--   ga              U      AG     -guu u 

>xtr-mir-212 (-36.90)   [xtr-miR-212:63-83]

ug     u  a    -ca  u     c       c       gaaa      
  gucau gc ucgg   cc uggcu uagacug uuacugu    cugug 
  ||||| || ||||   || ||||| ||||||| |||||||    |||| c
  cagua ug aguc   GG ACUGA AUCUGAC AAUgaca    gauau 
--     -  c    aUC  U     C       -       --ag      

>xtr-mir-221 (-38.70)   [xtr-miR-221:59-81]

ac   gac  ug     -c   ug   u         aaaa    -   u 
  cca   uu  gcgug  acc  gca acaauguag    cugu guu g
  |||   ||  |||||  |||  ||| |||||||||    |||| ||| c
  ggu   aa  cguaC  UGG  CGU UGUUACAUC    GAca cga a
-a   ---  gu     UU   GU   C         ----    a   a 

>xtr-mir-338-2 (-20.60)   [xtr-miR-338:39-60]

      u   -       c ucu    gugc 
caacaa auc cugaugc g   gagu    g
|||||| ||| ||||||| |   ||||     
GUUGUU UAG GACUACG C   CUcg    g
      U   U       A ---    aaag 

>xtr-mir-363 (-32.40)   [xtr-miR-363-5p:13-34] [xtr-miR-363-3p:56-76]

u     u   cg         CA  A         a   aguu 
 uuugu guu  CGGGUGGAU  CG UGCAAUUUu uuu    u
 ||||| |||  |||||||||  || ||||||||| |||     
 agacg caa  GUCUACCUA  GC ACGUUAAaa gag    g
a     c   aU         UG  -         a   gaug 

>xtr-mir-429 (-38.60)   [xtr-miR-429:53-74]

u   u  -         u -          ag       cu  u 
 gcc gu ugaccaaug c uuaccagaca  guuagau  ag u
 ||| || ||||||||| | ||||||||||  |||||||  || a
 cgg ua acugguUGC G AAUGGUCUGU  UAAUcug  uc c
-   u  c         C U          CA       -c  u 

>xtr-mir-449 (-36.10)   [xtr-miR-449:16-37]

cu    uu      aA     -     U      UG  u gaaaa 
  gugu  agaagg  GGCAG UGUAA GUUAGC  GU g     u
  ||||  ||||||  ||||| ||||| ||||||  || |      
  uaca  ucuucc  ccguc acauu caauug  ca c     a
--    uu      cc     c     -      gu  - agacg 

>xtr-mir-451 (-36.40)   [xtr-miR-451:12-33]

   ug     gA    G            A 
gag  gcaau  AACC UUACCAUUACUG G
|||  |||||  |||| ||||||||||||  
cuc  cguug  uugg aaugguaaugau U
   gu     uc    g            U 

>xtr-mir-18b (-30.40)   [xtr-miR-18b:9-31]

c         --   U    C   U     UA   a aua 
 cuuguguUA  AGG GCAU UAG GCAGU  Gug c   g
 |||||||||  ||| |||| ||| |||||  ||| |    
 ggacacggu  ucc cgua auc cguca  uac g   u
-         uu   u    a   c     uc   - aug 

>xtr-mir-19b-1 (-32.70)   [xtr-miR-19b:44-66]

  uc u        a  -   -      u    ugac 
gc  c gucaguuu gc ugg uuugca cagc    u
||  | |||||||| || ||| |||||| ||||     
cg  g cAGUCAAA CG ACC AAACGU GUcg    a
  gu u        A  U   U      -    uguu 

>xtr-mir-20b (-28.72)   [xtr-miR-20b:8-30]

-     -ucCA           G     G   uugua 
 gcagu     AAGUGCUCAUA UGCAG UAG     u
 |||||     ||||||||||| ||||| |||     u
 cguca     uucacggguau auguc auc     g
u     ugaca           a     -   uugua 

>xtr-mir-133a (-34.70)   [xtr-miR-133a:53-74]

      uu g   a       aa  u  a        accuc 
caaugc  u cua agcuggu  aa gg accaaauc     u
||||||  | ||| |||||||  || || ||||||||      
guuacg  a gaU UCGACCA  UU CC UGGUUuag     u
      uu g   G       AC  C  C        guaac 

>xtr-mir-428 (-23.00)   [xtr-miR-428:43-64]

   --gu     u    --     c  gu     ug 
cac    cggcc aacu  ggagc cu  cucau  c
|||    ||||| ||||  ||||| ||  |||||  a
gug    GUUGG UUGA  UCUCG GA  gagug  g
   aguc     C    UC     U  AU     uc 

>mmu-mir-652 (-51.30)   [mmu-miR-652:61-81]

aggaaca   a                  gaggg           ca  g 
       gcu uguacugcacaacccuag     ggugccauuca  ua a
       ||| ||||||||||||||||||     |||||||||||  || g
       cga augugacGUGUUGGGAUC     CCGCGGUAAgu  au u
-cacauc   c                  ----A           ua  a 

>tni-mir-10d (-46.10)   [tni-miR-10d:28-52]

    ----g   -   -gc   u        c  A    G       G   G    UG   c 
gccg     uga ggu   ucg cgucuaua aU CCCU UAGAACC AAU UGUG  cag u
||||     ||| |||   ||| |||||||| || |||| ||||||| ||| ||||  ||| g
cggc     gcu cua   agu gcggguau ug gggg aucuugg uua acac  guu a
    aagua   a   aua   c        c  a    -       g   g    ua   c 

>fru-mir-10d (-50.20)   [fru-miR-10d:28-52]

c      gg  ga            a  A    G       G   G    UG   c 
 cgguga  ug  ucgucgucuaua aU CCCU UAGAACC AAU UGUG  cag u
 ||||||  ||  |||||||||||| || |||| ||||||| ||| ||||  ||| g
 gucacu  au  aguagcggguau ug gggg aucuugg uua acac  guu a
a      -a  -a            c  a    -       g   g    ua   c 

>bmo-let-7 (-50.40)   [bmo-let-7:20-40] [bmo-let-7*:66-87]

g  acug           uU   G                a  g aa  ca 
 gu    ccgucggcuug  GAG UAGUAGGUUGUAUAGU cg a  ua  a
 ||    |||||||||||  ||| |||||||||||||||| || |  ||  c
 ca    ggcagucgagC  UUC AUCGUCCGAUAUGUCa gc u  au  a
a  guaa           CU   A                -  g gg  ac 

>bmo-mir-1 (-42.52)   [bmo-miR-1*:16-36] [bmo-miR-1:53-74]

a    u     a            C    UUC     gucau 
 gccu gcgca guuCCGUGCUUC UUAC   CCAUa     u
 |||| ||||| |||||||||||| ||||   |||||     g
 cggg cgcgu cGAGGUAUGAAG AAUG   GGUau     u
g    -     -            A    UAA     acuaa 

>bmo-mir-7 (-31.60)   [bmo-miR-7:15-37] [bmo-miR-7*:52-72]

c   -    g     U  A   C         --    -   uu 
 gcu ucgu uugua GG AGA UAGUGAUUU  UGUU GUu  u
 ||| |||| ||||| || ||| |||||||||  |||| |||   
 cga agcg aacAU CC UCU AUCACUAAA  Acaa cag  g
a   c    a     -  G   A         GA    u   uu 

>bmo-mir-8 (-37.62)   [bmo-miR-8*:21-42] [bmo-miR-8:60-82]

c    ---c     aa   uu  -      -   G     C       uccug 
 acga    ggagu  cgg  cg CAUCUU ACC GGCAG AUUAGAg     u
 ||||    |||||  |||  || |||||| ||| ||||| |||||||     c
 ugcu    ccucg  gcc  gC GUAGAA UGG CUGUC UAAUcuu     u
c    ugca     -c   -u  U      A   A     A       uuaua 

>bmo-mir-9a (-37.30)   [bmo-miR-9a:18-40] [bmo-miR-9a*:55-77]

a      u   uaa   U       U        G     -  au 
 guagau ggu   uua CUUUGGU AUCUAGCU UAUGA gu  u
 |||||| |||   ||| ||||||| |||||||| ||||| ||  a
 caucug ccg   aAU GAGGCCA UGGAUCGA AUAcu ca  c
a      -   -ug   U       U        A     g  gu 

>bmo-mir-10 (-39.60)   [bmo-miR-10:15-35] [bmo-miR-10*:50-72]

a    c      cu   -  G    U           ugaa 
 gugc cuacau  ACC CU UAGA CCGAAUUUGUu    g
 |||| ||||||  ||| || |||| |||||||||||    u
 cacg ggugug  UGG GA AUCU GGCUUAAACag    g
g    u      UU   A  G    U           cgga 

>bmo-mir-14 (-39.90)   [bmo-miR-14*:14-36] [bmo-miR-14:48-68]

u       ug   C           UC   GA     uu 
 ugucauu  ugu GGGGAGAGAAA  GAC  GGCUg  u
 |||||||  ||| |||||||||||  |||  |||||  u
 acaguga  auA CCUCUCUCUUU  CUG  CUgau  a
u       gu   U           UU   -A     uu 

>bmo-mir-34 (-47.60)   [bmo-miR-34:21-42] [bmo-miR-34*:60-81]

a  a c     a ac    uU        G     C       --g   g 
 ga u agggu g  cgcg  GGCAGUGU GUUAG UGGUUGu   uau g
 || | ||||| |  ||||  |||||||| ||||| |||||||   |||  
 cu a uccca c  gcgU  UCGUCACA CAAUC ACCGAca   gua a
a  a a     - gu    CC        G     -       aca   a 

>bmo-mir-124 (-33.82)   [bmo-miR-124:54-76]

c     ac   cuc           c ga   g     uauau 
 agucc  cuc   gcguucacugc g  gcc uuaug     u
 |||||  |||   ||||||||||| |  ||| |||||     u
 ucagg  gaG   CGUAAGUGGCG C  CGG AAUac     a
c     -c   AAC           - -A   -     uuaaa 

>bmo-mir-263b (-36.00)   [bmo-miR-263b:15-35] [bmo-miR-263b*:56-76]

-a   g      uucCUU    C       A     a  a  -  u 
  gcc acgcug      GGCA UGGGAGA UUCAC gg gu ug a
  ||| ||||||      |||| ||||||| ||||| || || || a
  ugg ugugac      CCGU GCCCUUU AAGUG cc ca ac u
ac   -      ucGAUU    A       -     -  -  u  u 

>bmo-mir-263a (-36.86)   [bmo-miR-263a:19-39] [bmo-miR-263a*:60-81]

a   a   aa    a  cA   G     GA   AU       uucagu 
 ucg ucc  gcac gg  AUG CACUG  AGA  UCACggg      u
 ||| |||  |||| ||  ||| |||||  |||  |||||||      u
 agc agg  cgug uC  UAC GUGAU  UCU  AGUGCcc      a
c   -   -a    g  AC   G     UC   --       uuauau 

>bmo-mir-275 (-48.50)   [bmo-miR-275*:16-38] [bmo-miR-275:51-73]

c   c  ca               - C  CG  AG    gucc 
 agg gg  gcgccgCGCGCUACU C GG  CC  GACU    u
 ||| ||  ||||||||||||||| | ||  ||  ||||     
 ucc cc  ugugGCGCGCGAUGA G CC  GG  CUga    c
a   u  uc               A U  AU  -A    gcca 

>bmo-mir-276 (-37.90)   [bmo-miR-276:16-37] [bmo-miR-276*:51-72]

c      uua   cu    A     AG         -  aug 
 ugguaa   cca  AGCG GGUAU  AGUUCCUAC Gu   c
 ||||||   |||  |||| |||||  ||||||||| ||    
 accguu   ggu  UCGU CCAUA  UCAAGGAUg ca   u
a      -ug   UC    G     CU         u  caa 

>bmo-mir-277 (-63.40)   [bmo-miR-277*:19-39] [bmo-miR-277:81-103]

-   -au             -          -            aagag cc     guu    u 
 uug   uacgccucggggu UCGUGCCAGG AGUGCGUUUGCa     g  gacau   ugcg u
 |||   ||||||||||||| |||||||||| ||||||||||||     |  |||||   ||||  
 aac   gugcggggcccuA AGCAUGGUCU UCACGUAAAUgu     c  uugua   acgu a
c   gau             C          A            ---ca aa     ---    u 

>bmo-mir-279a (-35.80)   [bmo-miR-279a:52-70]

a  u        uuc        ga        g    uuua 
 cg caauuucu   gaugagug  gguuuagu caug    u
 || ||||||||   ||||||||  |||||||| ||||    u
 gc guugaagg   cUACUCAC  CUAGAUCA GUac    u
a  -        uac        AC        -    caca 

>bmo-mir-282 (-38.60)   [bmo-miR-282:11-37] [bmo-miR-282*:54-75]

c     uuu   C        CCUU    U      Uuuc  u 
 gggac   gAC UAGCCUCU    GGCU UGUCUG    gu a
 |||||   ||| ||||||||    |||| ||||||    || g
 cccug   uuG AUUGGAGA    CCGA ACAgac    cg u
u     -uu   C        UAGU    U      ---u  a 

>bmo-mir-283 (-33.80)   [bmo-miR-283:14-34] [bmo-miR-283*:50-71]

a    u  cc    AA             AU      c  u 
 acgu uc  gacU  AUAUCAGCUGGUA  UCUggg uu a
 |||| ||  ||||  |||||||||||||  |||||| ||  
 ugca ag  uuGA  UAUGGUCGACUAU  GGACcc aa u
a    u  ua    CA             -C      u  u 

>bmo-mir-305 (-49.80)   [bmo-miR-305:17-39] [bmo-miR-305*:55-75]

c        -    cccAU         U       U    u   c 
 gaccgccg cacg     UGUACUUCA CAGGUGC CUGg gau a
 |||||||| ||||     ||||||||| ||||||| |||| |||  
 uuggcggc gugc     ACAUGAGGU GUUCGCG Gacc uug u
a        u    caUUC         U       -    -   a 

>bmo-mir-307 (-42.80)   [bmo-miR-307*:16-38] [bmo-miR-307:61-80]

a      ucc    uA         CCU  G       u  ---   c 
 gcucgu   cggu  CUCACUCAA   GG UGUGAUG gu   gca u
 ||||||   ||||  |||||||||   || ||||||| ||   ||| c
 cgagua   gcua  GAGUGAGUU   CC ACACUac cg   cgu g
c      ucu    gc         CCU  A       c  gcu   u 

>kshv-mir-K12-12 (-59.20)   [kshv-miR-K12-12:21-43] [kshv-miR-K12-12*:59-80]

    -  c      cg            C    A      U   cauua 
gaug gc ggcacg  gugucAACCAGG CACC UUCCUC CCG     a
|||| || ||||||  |||||||||||| |||| |||||| |||      
cuac cg ccgugu  cacAGUUGGUCC GUGG AGGGGG ggc     a
    g  -      aa            C    G      U   ucacg 

>ebv-mir-BART15 (-29.10)   [ebv-miR-BART15:47-68]

u   c g  ugg         u      c   ag    u 
 gug c cu   agggaaaca gaccac uga  ucug u
 ||| | ||   ||||||||| |||||| |||  |||| a
 cac g ga   UUCCUUUGU UUGGUG ACU  Ggac a
a   a a  uAG         U      -   --    c 

>ebv-mir-BART16 (-34.80)   [ebv-miR-BART16:20-43]

   -cuu    g     a  UUA      GU     U   C     uuua 
agg    ucag ugugg au   GAUAGA  GGGUG GUG UCUug    a
|||    |||| ||||| ||   ||||||  ||||| ||| |||||    u
ucc    aguu acacc ua   cuaucu  cccac cac agaac    u
   aaau    a     c  uac      --     -   u     caca 

>ebv-mir-BART17 (-49.60)   [ebv-miR-BART17-5p:22-43] [ebv-miR-BART17-3p:60-82]

    aac   -a    gca  -     A      -            uuauu 
guug   agg  ugug   cc cUAAG GGACGC AGGCAUACAAGg     a
||||   |||  ||||   || ||||| |||||| ||||||||||||      
cgau   ucc  acgc   gg GAUUC CCUGUG UCCGUAUGUucc     c
    gga   gg    -ag  U     C      G            ugacc 

>ebv-mir-BART18 (-46.80)   [ebv-miR-BART18-5p:31-52] [ebv-miR-BART18-3p:67-88]

    u  c     --aaga      uc    cU -       C      U      u  u 
uugu gc guuga      cgggug  cugg  C AAGUUCG ACUUCC AUACAg gu a
|||| || |||||      ||||||  ||||  | ||||||| |||||| |||||| ||  
agcg cg cagcu      gcucau  gacc  G UUCGGGU UGAAGG UAUguu cg a
    u  u     guaaua      gu    CU C       U      C      c  a 

>ebv-mir-BART19 (-41.90)   [ebv-miR-BART19-5p:18-40] [ebv-miR-BART19-3p:57-77]

  a    u       caA       -C       U      gg ua 
gu uccg guccuga   CAUUCCC  GCAAACA GACAUG  u  a
|| |||| |||||||   |||||||  ||||||| ||||||  |   
cg aggu cgggauu   GUAAGGG  CGUUUGU UUguac  a  u
  a    c       cUC       UU       U      aa uu 

>ebv-mir-BART20 (-41.60)   [ebv-miR-BART20-5p:21-41] [ebv-miR-BART20-3p:56-77]

    -  --cgu   -   u  u         -A         U  -ug    
uaca gg     agg gcc au gUAGCAGGC  UGUCUUCAU CC   cgu 
|||| ||     ||| ||| || |||||||||  ||||||||| ||   || a
augu cc     ucc cgg ua CAUUGUCCG  ACGGAAGUA gg   gcc 
    a  uuuuu   a   u  C         AC         C  uaa    

>gga-mir-21 (-45.70)   [gga-miR-21:18-39]

-----u      ucc                A     A     A    ugg 
      guacca   ugucggaUAGCUUAUC GACUG UGUUG cugu   a
      ||||||   |||||||||||||||| ||||| ||||| ||||    
      uauggu   acagucugucggaugg cugac acaac ggua   u
acucuc      uuu                -     a     -    cuc 

>gga-mir-451 (-39.10)   [gga-miR-451:18-40]

acaca      g   g A                GA 
     uggcug cag g AACCGUUACCAUUACU  G
     |||||| ||| | ||||||||||||||||   
     accgac guc u uuggcaaugguaauga  U
-----      a   g c                UU 

>gga-mir-144 (-37.40)   [gga-miR-144:53-74]

ccc  c    u   cu g        a         --ag   a 
   gc gccc ggg  g auaucauc uauacugua    uuc c
   || |||| |||  | |||||||| |||||||||    ||| u
   cg cggg ccc  C UGUAGUAG AUAUGACAU    gag a
---  u    u   CU A        -         Caca   u 

>gga-mir-456 (-37.40)   [gga-miR-456:71-92]

auuuaagcu  u  --g gu   c        g   g     uc       acau ug    c 
         gc gu   u  gug guguguga cag caucu  ucagccu    g  gauu c
         || ||   |  ||| |||||||| ||| |||||  |||||||    |  ||||  
         cg ca   g  uac uacguACU GUU GUAGA  GGUCGGA    C  cuaa u
---------  u  aua uc   u        -   G     UU       ---- gu    a 

>gga-mir-460a (-30.00)   [gga-miR-460a:15-36]

----c     -a     caC UG       CA A        guua 
     ugacu  uauag   C  CAUUGUA  C CUGUGUGu    a
     |||||  |||||   |  |||||||  | ||||||||    c
     acuga  auguc   g  guaacau  g gacacgua    u
cacuc     ag     uua gu       ac c        aagg 

>gga-mir-757-1 (-24.70)   [gga-miR-757:16-36]

-------ccc    acuu   c  A    U     U   A   uc 
          ggug    ucu GC GAGC GCAGA GGG UUC  g
          ||||    ||| || |||| ||||| ||| |||  c
          ucac    agg ug cucg cgucu cuc gag  u
augucgugac    --au   c  a    u     -   -   ua 

>gga-mir-757-2 (-24.70)   [gga-miR-757:16-36]

-------ccc    acuu   c  A    U     U   A   uc 
          ggug    ucu GC GAGC GCAGA GGG UUC  g
          ||||    ||| || |||| ||||| ||| |||  c
          ucac    agg ug cucg cgucu cuc gag  u
augucgugac    --au   c  a    u     -   -   ua 

>mmu-mir-490 (-32.30)   [mmu-miR-490:59-80]

uggaaaguucauugu      c      --         g   cac  uua 
               ucgaca caugga  ucuccaggu ggu   gu   g
               |||||| ||||||  ||||||||| |||   ||    
               aguuGU GUACCU  GGAGGUCCA Cca   ca   a
---------------      C      CA         A   ---  uau 

>mmu-mir-676 (-42.80)   [mmu-miR-676*:18-39] [mmu-miR-676:55-75]

cuuu    --        gA   U             UU   gaauu 
    gccu  gaaugcau  CUC ACAACCUUAGGAC  GCa     a
    ||||  ||||||||  ||| |||||||||||||  |||      
    cggg  uuugcgug  GAG UGUUGGAGUCCUG  Cgu     a
----    uc        UC   U             -C   aagga 

>mmu-mir-615 (-61.00)   [mmu-miR-615-5p:17-38] [mmu-miR-615-3p:60-81]

uc    -    c          UC     U        Cu    g ug 
  ggga gggg gggagGGGGG  CCCGG GCUCGGAU  cgag g  c
  |||| |||| ||||||||||  ||||| ||||||||  |||| |  u
  cccu cccc ccUUCUCCCU  GGGUC CGAGCCUg  gcuu u  u
--    a    -          CU     -        --    g ua 

>bta-mir-106 (-30.10)   [bta-miR-106:13-34]

  u   cc      -        A  G     G   c  u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAg uu u
|| |||  |||||| |||||||| || ||||| ||| || u
gg acc  uacauu uucacgaa gu acguc auc ag g
  u   au      c        c  a     -   u  a 

>bta-mir-107 (-29.60)   [bta-miR-107:50-71]

c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaa   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

>bta-mir-10a (-32.39)   [bta-miR-10a:22-44]

----gauc   --c    uu        A    G     C          uaaggaa 
        ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
        |||   ||||  |||||||| |||| ||||| ||||||||||        
        aca   acag  gauguaua gggg aucua gcuuaaacac       u
cucgccuc   aau    uu        a    -     u          uaguguu 

>bta-mir-127 (-39.80)   [bta-miR-127:55-76]

-------u   ca   ucu      ugcug         g  c      --  a 
        gau  cug   ccagcc     aagcucaga gg ucugau  uc g
        |||  |||   ||||||     ||||||||| || ||||||  || a
        cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacuccu   aa   --u      -----         G  U      cu  a 

>bta-mir-139 (-37.20)   [bta-miR-139:7-29]

gug       -   U  A            g gg 
   uacUCUA CAG GC CGUGUCUCCAGU u  c
   ||||||| ||| || |||||||||||| |  u
   augaggu guc cg gcgcagaggucg a  c
-ca       u   c  -            g gg 

>bta-mir-140 (-51.10)   [bta-miR-140:56-77]

--uc    u        -  a             a       uu   uc 
    ucuc guguccug cc gugguuuuacccu ugguagg  acg  a
    |||| |||||||| || ||||||||||||| |||||||  |||   
    gggg cauaggac GG CACCAAGAUGGGA ACCAUcu  ugu  u
ccac    c        A  -             C       --   cg 

>bta-mir-142 (-44.70)   [bta-miR-142:16-35] [bta-miR-142*:55-76]

g        g   c           A         uaa ag a 
 acagugca uca cCAUAAAGUAG AAGCACUAC   c  c c
 |||||||| ||| ||||||||||| |||||||||   |  |  
 ugucaugu aGU GGUAUUUCAUC UUUGUGAug   g  g u
g        g   A           C         -ug ga g 

>bta-mir-15b (-30.50)   [bta-miR-15b:20-41]

u    --a       gua   U       C  C      UA   a  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
u    aaa       aaa   c       u  u      gc   -  ac 

>bta-mir-181b-2 (-35.70)   [bta-miR-181b:16-39]

cuga   -     cucA          CU           u  cu 
    ugg cugca    ACAUUCAUUG  GUCGGUGGGUU ga  u
    ||| |||||    ||||||||||  ||||||||||| ||  u
    acc ggcgu    uguaaguaac  uagucacucaa cu  g
acaa   a     caaa          --           -  aa 

>bta-mir-193a (-48.10)   [bta-miR-193a-5p:15-36] [bta-miR-193a-3p:49-70]

u   a      ag     U     CG   G  A    ggu 
 ggg gcugag  cUGGG CUUUG  GGC AG UGAa   g
 ||| ||||||  ||||| |||||  ||| || ||||    
 ccc cggcuc  GACCC GAAAC  CCG UC Acuu   u
c   -      cU     U     AU   G  A    ggc 

>bta-mir-20b (-30.60)   [bta-miR-20b:6-27]

     -CA           G     G   uuuu     
aguac   AAGUGCUCACA UGCAG UAg    ggca 
|||||   ||||||||||| ||||| |||    ||| g
ucaug   uucacgggugu auguc auc    ucgc 
     acc           g     -   ----     

>bta-mir-215 (-32.30)   [bta-miR-215:12-33]

u        aaA  A     -   U         -  gug 
 guacagga   UG CCUAU GAA UGACAGACA ac   a
 ||||||||   || ||||| ||| ||||||||| ||    
 uaugucuu   ac ggaug cuu acugucugu ug   c
-        gua  c     u   u         c  aau 

>bta-mir-218-2 (-25.40)   [bta-miR-218:2-23]

uUU         CU        Gguggaacga  g 
   GUGCUUGAU  AACCAUGU          ug a
   |||||||||  ||||||||          ||  
   cacgaacug  uugguaca          gc a
--c         uc        --------ag  a 

>bta-mir-30e (-54.50)   [bta-miR-30e-5p:17-40]

g        uu  ua            UU           g aag    
 ggcagucu  gc  cUGUAAACAUCC  GACUGGAAGCU u   gcg 
 ||||||||  ||  ||||||||||||  ||||||||||| |   || u
 ccgucgga  cg  gacauuuguagg  cugacuuucga g   cgu 
a        --  gc            --           g -aa    

>bta-mir-345 (-53.20)   [bta-miR-345-5p:17-37] [bta-miR-345-3p:55-74]

---acc             G U          C   U   ug g u 
      caaacccaggucu C GACUCCUAGU CAG GCU  u a g
      ||||||||||||| | |||||||||| ||| |||  | |  
      guuuggguccgGA G CUGGGGAUCA GUC cgg  g u g
cuauaa             G U          A   C   gu g c 

>bta-mir-369 (-29.10)   [bta-miR-369-5p:10-29] [bta-miR-369-3p:43-63]

-   ag               UA      Cuuua 
 uga  ggagAUCGACCGUGU  UAUUCG     u
 |||  |||||||||||||||  ||||||      
 acu  UUUCUAGUUGGUACA  AUAAgc     u
g   cu               UA      uucag 

>bta-mir-380 (-23.90)   [bta-miR-380-5p:5-26] [bta-miR-380-3p:40-60]

      GUU       GA       - ugu 
aagaUG   GACCAUA  ACAUGCG C   c
||||||   |||||||  ||||||| |   u
uUCUGC   CUGGUGU  UGUAUgc g   c
      -AC       AA       u uau 

>bta-mir-487a (-30.90)   [bta-miR-487a:49-69]

      u     g   uua      c    -    cu  a 
gguacu gaaga ugg   ucccug ugug uucg  gu u
|||||| ||||| |||   |||||| |||| ||||  ||  
cuauga uuuuU ACC   AGGGAC AUAC AAgc  ua u
      c     G   UAC      -    U    ag  u 

>bta-mir-545 (-33.60)   [bta-miR-545*:25-45] [bta-miR-545:62-83]

cccag    ------g   a  c      - U            AUUG     -a  aa 
     ccug       cac uu guaggc c CAGUAAAUGUUU    GAUGa  ua  u
     ||||       ||| || |||||| | ||||||||||||    |||||  ||   
     ggac       gug aa cguccG G GUUAUUUACAAA    CUAcu  gu  g
-----    accucua   c  u      U U            -CAA     cg  aa 

>bta-mir-92 (-25.00)   [bta-miR-92:41-62]

-------u    g     uu  u   c     -      
        gggu gggau  gu gca ugcuu guguu 
        |||| |||||  || ||| ||||| |||| a
        UCCG CCCUG  CA CGU AUgaa uauau 
agaaggUG    G     UU  -   U     a      

>bta-mir-98 (-53.00)   [bta-miR-98:22-43]

a   cuc    -     ug   U                 U    ---------      aggg 
 gga   ugcu caugc  ggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 |||   |||| |||||  ||| ||||||||||||||||| ||||         ||||||    u
 cuu   acga gugug  ccc uuucaucauucaacaua caau         accccg    u
a   -ac    u     gu   -                 u    agaaguuua      gauu 

>bta-let-7d (-43.51)   [bta-let-7d:8-29]

       A              C      u  -------      g 
ccuagga GAGGUAGUAGGUUG AUAGUU uc       gggcag g
||||||| |||||||||||||| |||||| ||       |||||| a
ggauucu uuccgucguccagc uaucaa gg       cccguu u
       -              a      u  aggaaca      u 

>bta-mir-124a-1 (-35.92)   [bta-miR-124a:53-75]

a      uc   cc        a   ga        uaaau 
 ggccuc  ucu  guguucac gcg  ccuugauu     g
 ||||||  |||  |||||||| |||  ||||||||     u
 ucgggg  aGA  CGUAAGUG CGC  GGAAUuaa     c
g      ua   AC        G   AC        cauac 

>bta-mir-132 (-48.70)   [bta-miR-132:59-80]

c   cccc    -  c a    a         uuc          -g     
 cgc    gcgu cu c gggc accguggcu   gauuguuacu  uggg 
 |||    |||| || | |||| |||||||||   ||||||||||  ||| a
 gcg    cgca ga g cccG UGGUACCGA   CUGACAAUgg  gcca 
c   cacc    c  c c    C         CAU          ag     

>bta-mir-138-2 (-35.70)   [bta-miR-138:9-31]

- u   u  AG             UCA     -ac   c  cg 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg ug  gaccacagcacuu   ucggc   uuc uc  a
a u   u  -g             -ua     cca   -  cu 

>bta-mir-148b (-33.60)   [bta-miR-148b:54-75]

---uu   a       ug         u  a    ca    gugg u 
     agc uuugagg  aaguucugu au cacu  ggcu    c c
     ||| |||||||  ||||||||| || ||||  ||||    | u
     ucg aagcucU  UUCAAGACA UA GUGA  CUga    g c
aucuu   a       GU         C  C    --    --aa u 

>bta-mir-17 (-34.30)   [bta-miR-17-5p:14-37] [bta-miR-17-3p:51-70]

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

>bta-mir-181c (-44.30)   [bta-miR-181c:19-42]

----uug   a  g       gAA        CU       A     ggca 
       cca gg uuugggg   CAUUCAAC  GUCGGUG GUUUg    g
       ||| || |||||||   ||||||||  ||||||| |||||    c
       ggu cc gagcccc   gugaguug  cagcuac caaac    u
ccgucaa   -  g       -ag        -c       -     ggac 

>bta-mir-186 (-42.50)   [bta-miR-186:15-36]

u     u                 U     U      ucu  uu 
 gcuua aacuuucCAAAGAAUUC CCUUU GGGCUu   ga  u
 ||||| ||||||||||||||||| ||||| ||||||   ||   
 cgagu uugaaggguuuuuuaag ggaaa cccgaa   uu  u
u     -                 u     -      --u  ua 

>bta-mir-191 (-49.90)   [bta-miR-191:15-37]

-   u   c      C          C  AA       uu  -  c 
 ggc gga agcggg AACGGAAUCC AA  GCAGCUG  gu cu c
 ||| ||| |||||| |||||||||| ||  |||||||  || ||  
 ccg ccu ucgucc uugcuuuagg uu  cgucgac  ua ga a
u   u   c      c          -  cg       cu  c  g 

>bta-mir-192 (-40.10)   [bta-miR-192:20-42]

----agacc   u  --   g g  C         -     A       ----u  uc 
         gag gc  aca g cu UGACCUAUG AAUUG CAGCCAG     gc  u
         ||| ||  ||| | || ||||||||| ||||| |||||||     ||   
         cuc cg  ugu u ga acuggauac uuaac gucgguc     ug  u
cgaccguaa   -  cu   a g  c         c     c       ucccc  ug 

>bta-mir-199b (-37.20)   [bta-miR-199b:16-38]

----------cc    cu  -     C       U       U    U  ----  a 
            ucca  cc gucua CCAGUGU UAGACUA CUGU Ca    gg c
            ||||  || ||||| ||||||| ||||||| |||| ||    ||  
            gggu  gg cggau gguuaca gucugau gaca gu    cc u
ggcucccagauu    cg  u     u       c       -    u  uaaa  c 

>bta-mir-200a (-41.10)   [bta-miR-200a:52-74]

   - c   g        -             c    uuuc     
ggg c ucu uggacauc uuaccggacagug ugga    ucgg 
||| | ||| |||||||| ||||||||||||| ||||    ||| c
ccc g gga acUUGUAG AAUGGUCUGUCAC AUcu    agcu 
   a u   a        C             A    ---c     

>bta-mir-200c (-28.10)   [bta-miR-200c:41-63]

----    -      a        u   u   gg 
    cguc uuaccc gcaguguu ggg gcu  u
    |||| |||||| |||||||| ||| |||  u
    GUAG AAUGGG CGUCAUAA cuc uga  g
ggAG    U      C        U   -   gg 

>bta-mir-210 (-46.00)   [bta-miR-210:54-76]

--------cc      c    gg     a   cc   -      c  c -     
          uccagg gcag  cagcc cug  cac cgcaca ug g cugc 
          |||||| ||||  ||||| |||  ||| |||||| || | ||| u
          gggucc uguc  GUCGG GAC  GUG GCGUGU Ac c ggcc 
ccagcgcgac      c    uA     C   -A   U      C  c a     

>bta-mir-214 (-67.62)   [bta-miR-214:71-92]

ggccu      acgga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           U          CAC            cacuc 

>bta-mir-22 (-39.80)   [bta-miR-22-5p:15-36] [bta-miR-22-3p:53-73]

   u   cc               -     A      u  ccu 
ggc gag  gcaguAGUUCUUCAG UGGCA GCUUUA gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguuGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

>bta-mir-23a (-34.00)   [bta-miR-23a:45-66]

  c   c     -       g    g      c  c 
gg cgg ugggg uuccugg gaug gauuug ug c
|| ||| ||||| ||||||| |||| |||||| || u
cc gcc ACCUU AGGGACC UUAC CUAaac ac g
  a   a     U       G    A      -  u 

>bta-mir-29b-2 (-31.24)   [bta-miR-29b:52-74]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuUU UGACUAAAGU UACCAC GA Ucua      u
         G          U      -  -    uguuuc 

>bta-mir-29c (-35.40)   [bta-miR-29c:54-75]

a         -  ggc           ucc       ---     u 
 ucucuuaca ca   ugaccgauuuc   ugguguu   cagag c
 ||||||||| ||   |||||||||||   |||||||   ||||| u
 gggggaugu gu   AUUGGCUAAAG   ACCACGA   guuuu g
a         a  ---           UUU       Ucu     u 

>bta-mir-361 (-31.30)   [bta-miR-361:6-27]

     UU         --U  A    U    auaa 
ggagc  AUCAGAAUC   CC GGGG ACuu    u
|||||  |||||||||   || |||| ||||    u
cuucg  uagucuuag   gg cccc ugaa    u
     uu         ugu  a    c    aaag 

>bta-mir-423 (-48.80)   [bta-miR-423-5p:17-39] [bta-miR-423-3p:52-75]

-----auaa       u            -AG   G    A     cua 
         aggaagu aggcUGAGGGGC   AGA CGAG CUUUu   u
         ||||||| ||||||||||||   ||| |||| |||||   u
         uccuucg ucUGACUCCCCG   UCU GCUC GAAaa   u
cgcgcccca       u            GAG   G    -     ccu 

>bta-mir-425 (-36.40)   [bta-miR-425-5p:15-36] [bta-miR-425-3p:55-76]

     c  u    aAU       U  C     U  ----Ag   g 
gaaag gc uugg   GACACGA CA UCCCG UG      ugg c
||||| || ||||   ||||||| || ||||| ||      |||  
cuuuc cg gaCC   CUGUGCU GU AGGGC Ac      acc a
     u  u    CGC       -  A     U  cgaaga   c 

>bta-mir-450 (-35.90)   [bta-miR-450:22-43]

caaagaaa     u       UUU     U               aa 
        gaugc aaacuau   UGCGA GUGUUCCUAAUAUgu  u
        ||||| |||||||   ||||| |||||||||||||||  c
        cuaug uuugaua   acguu uacaaggguuaugua  u
-----uaa     u       cuu     u               aa 

>bta-mir-455 (-41.60)   [bta-miR-455:16-36] [bta-miR-455*:54-75]

ucccu   -g     -----          U      A   C   gaa 
     ggc  ugagg     gUAUGUGCCU UGGACU CAU gug   g
     |||  |||||     |||||||||| |||||| ||| |||    
     ccg  acucc     CAUAUACGGG ACCUGA Gua cac   c
---au   ga     guUCA          U      C   c   gac 

>bta-mir-93 (-37.30)   [bta-miR-93:11-32]

cug       -CA        -    U    G   u  g u 
   ggggcuc   AAGUGCUG UUCG GCAG UAg gu a c
   |||||||   |||||||| |||| |||| ||| || | a
   ccccgag   uucacgac gagu cguc auc ca u c
---       ccc        c    -    -   -  g c 

>bta-let-7g (-38.80)   [bta-let-7g:5-26]

a   U        A            ugagg    -a  a    a 
 ggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
 ||| |||||||| ||||||||||||     ||||  || ||||  
 ccg uuccguca cggacaugucaa     uaga  ac augg c
-   -        c            -----    gg  -    c 

>bta-mir-10b (-37.70)   [bta-miR-10b:20-42]

--cag  a     u        A    G     C          u g   c 
     ug cguug cuauauaU CCCU UAGAA CGAAUUUGUG g uau c
     || ||||| |||||||| |||| ||||| |||||||||| | |||  
     ac guagc gguauaua gggg aucuu gcuuagacac u aug a
caaaa  -     u        a    -     a          - g   u 

>bta-mir-24-2 (-23.40)   [bta-miR-24-3p:50-71]

cu   cc   cg   -cu        --gaaa     u 
  cug  ucc  ugc   acugagcu      cacag u
  |||  |||  |||   ||||||||      ||||| g
  GAC  AGG  ACG   UGACUCGG      guguu a
-g   -A   --   ACU        Ucacac     u 

>bta-mir-30a (-32.70)   [bta-miR-30a-5p:2-25]

----            UC           ---g  ag 
    cUGUAAACAUCC  GACUGGAAGCU    ug  g
    ||||||||||||  |||||||||||    ||   
    gacguuuguagg  cugacuuucgg    ac  c
cguc            --           aaag  gu 

>bta-mir-200b (-25.50)   [bta-miR-200b:38-58]

c    -    ug     c      u  ug 
 cauc uuac  ggcag auugga gg  u
 |||| ||||  ||||| |||||| ||  c
 GUAG AAUG  CCGUC UAAUcu cu  u
a    U    GU     A      -  gg 

>bta-mir-7 (-20.70)   [bta-miR-7:31-54]

agacuggagcgguuguggucuagugcugugUGGAAGACUA       U      c  au 
                                        GUGAUUU GUUGUU ug  g
                                        ||||||| |||||| ||   
                                        cacugaa caacag au  u
-------------------------------------cga       -      u  ca 

>bta-let-7a-1 (-35.60)   [bta-let-7a:6-27]

     U   GU                uuagggucacac 
uggga GAG  AGUAGGUUGUAUAGUU            c
||||| |||  ||||||||||||||||            c
auccu uuc  ucaucuaacauaucaa            a
     -   ug                uagagggucacc 

>bta-mir-150 (-53.50)   [bta-miR-150:21-43]

------ccuc     u  c  -           AACC          U  g    
          ucucc ca gg cccugUCUCCC    CUUGUACCAG GU ugu 
          ||||| || || |||||||||||    |||||||||| || || c
          agggg gu cc gggacggaggg    ggacaugguc ca acu 
cgacgacccu     -  -  a           gcau          c  g    

>bta-mir-342 (-40.50)   [bta-miR-342:61-85]

uggaagc    g     c  g      --ua      gu    g   c gcaa 
       gggu cgagg ga gggugc    ucugug  ugag aca g    a
       |||| ||||| || ||||||    ||||||  |||| ||| |     
       cccg gcucc CU CCCACG    AGACAC  ACUC Ugu c    u
-------    -     U  A      CUAA      --    -   - aaag 

>bta-mir-487b (-34.80)   [bta-miR-487b:51-72]

u       ug        uuau      c u     uuuua 
 ugguacu  gagagugg    cccugu c guucg     c
 |||||||  ||||||||    |||||| | |||||      
 acuauga  uuUUCACC    GGGACA G UAAgc     u
a       cu        UACU      U C     uguac 

>bta-mir-532 (-29.02)   [bta-miR-532:19-40]

gacuugcuuu       a  U      A    A   CC  uggca 
          cucucuu CA GCCUUG GUGU GGA  GU     u
          ||||||| || |||||| |||| |||  ||     c
          gagagga gu cggaac caca ccu  ca     u
-------acc       c  u      c    c   cc  uuaau 

>bta-let-7f-1 (-43.30)   [bta-let-7f:7-28]

    a UG                      ---------       u 
ucag g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| |  ||||||||||||||||||||||         ||||||| a
aguc c  uccguuaucuaacauaucaaua         ucccauu u
    - cu                      gaggacuug       u 

>bta-mir-122 (-44.20)   [bta-miR-122:15-36]

c        -      GG       C           --u  c 
 cuuagcag agcugU  AGUGUGA AAUGGUGUUUG   gu c
 |||||||| ||||||  ||||||| |||||||||||   ||  
 ggauuguc ucgaua  ucacacu uuaccgcaaac   ca a
c        a      aa       a           uau  a 

>bta-mir-30c (-36.30)   [bta-miR-30c:26-48]

ca   u  -aa     cc    ugu U       U   ACA        ug gag 
  gac gu   ccaug  guag   g GUAAACA CCU   CUCUCAGC  u   c
  ||| ||   |||||  ||||   | ||||||| |||   ||||||||  |   u
  cug ca   gguac  cguc   c cauuugu ggg   gagggucg  g   c
--   -  aaa     --    uuc u       u   --a        gu gag 

>bta-let-7i (-39.60)   [bta-let-7i:6-27]

c    U                 U   --------  u     ugu 
 uggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
 |||| ||||||||||||||||| |||        || |||||   a
 aucg uuccgucaucgaacgcg caa        uc gcccg   c
-    -                 u   uagaggug  -     uua 

>bta-mir-23b (-21.94)   [bta-miR-23b-5p:1-21] [bta-miR-23b-3p:38-60]

--  --          -  C      gugacu 
  GG  GUUCCUGGCA UG UGAUUU      u
  ||  |||||||||| || ||||||       
  CC  UAGGGACCGU AC ACUAaa      a
CA  AU          U  -      auuaga 

>bta-mir-25 (-39.00)   [bta-miR-25:52-73]

    a ug   ag    g     uu g     u   -  acg 
ggcc g  uug  aggc gagac  g gcaau gcu gg   c
|||| |  |||  |||| |||||  | ||||| ||| ||    
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg cc   u
    c gu   AG    G     UU A     -   g  ccg 

>bta-mir-34c (-30.00)   [bta-miR-34c:13-34]

     ag     A   A    A     C      c  a 
agucu  uuacu GGC GUGU GUUAG UGAUUG ua u
|||||  ||||| ||| |||| ||||| |||||| ||  
uuaga  aaugg ccg caca caauc acuaac au a
     aa     a   g    c     -      c  a 

>bta-mir-363 (-25.80)   [bta-miR-363:51-71]

ug   u         ca  a         --ga   gu 
  uug cggguggau  cg ugcaauuuu    uua  a
  ||| |||||||||  || |||||||||    |||   
  aGC GUCUACCUA  GC ACGUUAaaa    gau  u
ca   -         UG  -         agag   aa 

>mtr-MIR395c (-44.70)   [mtr-miR395c:77-97]

         ug           cau     uau      gg      a 
gaguuccuu  aacgcuucaug   gagaa   cuauuu  ucuaau u
|||||||||  |||||||||||   |||||   ||||||  ||||||  
CUCAAGGGG  UUGUGAAGUAu   cuuuu   gauaga  agauua c
         GU           cuu     -cu      aa      c 

>mtr-MIR395d (-43.10)   [mtr-miR395d:75-95]

         ug          gca      uau      gg     aa 
gaguuccuu  aacgcuucau   ugagaa   cuauuu  ucuaa  u
|||||||||  ||||||||||   ||||||   ||||||  |||||   
CUCAAGGGG  UUGUGAAGUA   auucuu   gauaaa  agauu  c
         GU          --a      cuu      -a     ac 

>mtr-MIR395e (-47.60)   [mtr-miR395e:80-100]

         ug          -gcau      -        auu   uuu 
gaguuccuu  aacgcuucau     gagaau aucuaucu   ugg   a
|||||||||  ||||||||||     |||||| ||||||||   |||    
CUCAAGGGG  UUGUGAAGUA     uucuug uagauagg   acc   a
         GU          aauuc      a        auu   uaa 

>mtr-MIR395f (-39.80)   [mtr-miR395f:78-98]

         ug           cau     --a    ---   -u   uuu 
gaguuccuu  aacgcuucaug   gagaa   uauc   ucu  ugg   a
|||||||||  |||||||||||   |||||   ||||   |||  |||    
CUCAAGGGG  UUGUGAAGUAu   cuuuu   auag   aga  acc   a
         GU           cuu     aug    aaa   uu   uaa 

>mtr-MIR395g (-35.10)   [mtr-miR395g:43-63]

         ug         uau    -  u 
gaguuccuc  aacgcuuca   aaga gg u
|||||||||  |||||||||   |||| ||  
CUCAAGGGG  UUGUGAAGU   uucu cc a
         GU         Uac    a  u 

>mtr-MIR395h (-35.70)   [mtr-miR395h:81-101]

gac      ug          ac     guu       -  ---      aa 
   uuucuc  aacacuucau  aagag   auccauc ua   aucuaa  g
   ||||||  ||||||||||  |||||   ||||||| ||   ||||||   
   AAGGGG  UUGUGAAGUA  uucuu   uggguag au   uagauu  u
UUC      GU          ac     -gc       c  uua      ac 

>mtr-MIR395i (-31.40)   [mtr-miR395i:56-76]

         ug         -auc ug   caau    a 
gaguuccuc  aaugcuuca    a  aga    cuau u
|||||||||  |||||||||    |  |||    ||||  
CUCAAGGGG  UUGUGAAGU    u  ucu    gaua g
         GU         Aacu gu   ---u    a 

>mtr-MIR395j (-33.40)   [mtr-miR395j:56-76]

         ug         ---    u   a a    a 
gaguuccuc  aaugcuuca   aaca gag c aucu u
|||||||||  |||||||||   |||| ||| | ||||  
CUCAAGGGG  UUGUGAAGU   uugu cuu g uagg a
         GU         Aac    u   - a    u 

>mtr-MIR395k (-39.80)   [mtr-miR395k:78-98]

         ug           cau     --a    ---   -u   uuu 
gaguuccuu  aacgcuucaug   gagaa   uauc   ucu  ugg   a
|||||||||  |||||||||||   |||||   ||||   |||  |||    
CUCAAGGGG  UUGUGAAGUAu   cuuuu   auag   aga  acc   a
         GU           cuu     aug    aaa   uu   uaa 

>mtr-MIR395l (-41.40)   [mtr-miR395l:81-101]

         ug          gcau      au      ----auu   u u 
gaguuccuu  aacgcuucau    gagaau  cuaucu       ugg c a
|||||||||  ||||||||||    ||||||  ||||||       ||| |  
CUCAAGGGG  UUGUGAAGUA    uuuuua  gauaga       acc g a
         GU          -acu      cc      aaagauu   u a 

>mtr-MIR395m (-43.10)   [mtr-miR395m:80-100]

         ug          gca      uau      auuugg     aa 
gaguuccuu  aacgcuucau   ugagaa   cuaucu      ucuaa  u
|||||||||  ||||||||||   ||||||   ||||||      |||||   
CUCAAGGGG  UUGUGAAGUA   auucuu   gauaga      agauu  c
         GU          --a      cuu      ----aa     ac 

>mtr-MIR395n (-41.40)   [mtr-miR395n:81-101]

         ug          gcau      au      ----auu   u u 
gaguuccuu  aacgcuucau    gagaau  cuaucu       ugg c a
|||||||||  ||||||||||    ||||||  ||||||       ||| |  
CUCAAGGGG  UUGUGAAGUA    uuuuua  gauaga       acc g a
         GU          -acu      cc      aaagauu   u a 

>mtr-MIR395o (-35.90)   [mtr-miR395o:63-83]

         ug   u       uaaagggcuauagcaaga 
gaguuccuc  aac cuucauc                  a
|||||||||  ||| |||||||                  a
CUCAAGGGG  UUG GAAGUAg                  g
         GU   U       uauguuccuaaaaggaaa 

>mtr-MIR395p (-28.55)   [mtr-miR395p:52-72]

              a     u     acucaauuu 
gaguucccuuaaac uuuca uaagg         c
|||||||||||||| ||||| |||||          
CUCAAGGGGGUUUG GAAGU guucc         u
              C     U     aacuucucu 

>osa-MIR395m (-58.70)   [osa-miR395m:100-120]

         u    u       g  --g          --a        u  a     cu   a 
gaguucucc caaa cacuuca ua   auagcuagcu   ggcuucau gc uuaca  guu c
||||||||| |||| ||||||| ||   ||||||||||   |||||||| || |||||  |||  
CUCAAGGGG GUUU GUGAAGU au   uguugaucga   ccggggua cg agugu  caa a
         -    -       G  aua          aaa        -  -     --   a 

>osa-MIR395n (-39.60)   [osa-miR395n:46-66]

         u                c   auu 
gaguucccu caagcacuucacgacg acu   u
||||||||| |||||||||||||||| |||    
CUCAAGGGG GUUUGUGAAGUGuugu uga   a
         -                -   gag 

>osa-MIR395o (-33.70)   [osa-miR395o:49-69]

      u                -    a  auua 
gaguuc cuuuaagcacuucaua cgac cc    u
|||||| |||||||||||||||| |||| ||     
CUCAAG GAGGUUUGUGAAGUAu guug gg    u
      -                u    -  auug 

>osa-MIR395p (-37.50)   [osa-miR395p:48-68]

         u                c  -   u 
gaguucccu caagcacuucacgugg ac uau u
||||||||| |||||||||||||||| || |||  
CUCAAGGGG GUUUGUGAAGUGugcc ug gua c
         -                a  c   a 

>osa-MIR395q (-36.00)   [osa-miR395q:48-68]

         u              ----    cua 
gaguucccu caagcacuucacau    gaca   u
||||||||| ||||||||||||||    ||||   u
CUCAAGGGG GUUUGUGAAGUGua    cugu   u
         -              uuau    aac 

>osa-MIR395v (-13.60)   [osa-miR395v:49-69]

  a    cu     c        -    a aauu 
ga uucu  uuaag acuucaua cgac c    a
|| ||||  ||||| |||||||| |||| |    u
CU AAGG  GGUUU UGAAGUGu guug g    u
  C    -C     A        u    g aacu 

>osa-MIR395w (-26.00)   [osa-miR395w:48-69]

--         uuaau          ----   a  au 
  gaguucucu     cauuucacau    ggc cu  u
  |||||||||     ||||||||||    ||| ||   
  CUUAGGGGG     GUGAAGUGug    ccg ga  u
CU         --UUU          ucau   -  au 

>osa-MIR395r (-32.30)   [osa-miR395r:48-68]

         u   c          ----  ca     
gaguucccu caa cacuucacgu    gg  cuau 
||||||||| ||| ||||||||||    ||  ||| u
CUCAAGGGG GUU GUGAAGUGua    cc  gauu 
         -   U          ucau  ag     

>mdv1-mir-M1 (-32.30)   [mdv1-miR-M1:10-29] [mdv1-miR-M1*:51-70]

uucc  u       G    C              acau 
    cc uuUGCUU UUCA UGUGCGGCAuuauu    u
    || ||||||| |||| ||||||||||||||    u
    gg aAGCGAG AAGU ACGCGUCGUaaugg    a
--aa  c       A    -              ccac 

>mdv1-mir-M2 (-36.80)   [mdv1-miR-M2-5p:9-31] [mdv1-miR-M2-3p:49-69]

aa        UG        CC            g   g 
  aagaaaGU  UAUUCUGC  GGUAGUCCGuuu uaa g
  ||||||||  ||||||||  |||||||||||| |||  
  uucuUUCG  AUAAGACG  CCGUCAGGCaag guu u
-g        --        --            -   c 

>mdv1-mir-M3 (-29.40)   [mdv1-miR-M3:6-29] [mdv1-miR-M3*:56-67]

     A            A    U  C  u   aa 
gcggc UGAAAAUGUGAA CCUC CC GC aga  u
||||| |||||||||||| |||| || || |||  a
uguUG AUUUUUACAcuu gggg gg cg ucu  g
     A            -    -  u  -   aa 

>mdv1-mir-M4 (-27.60)   [mdv1-miR-M4:6-28] [mdv1-miR-M4*:43-63]

    uUUA      UA        C     uc g 
gaag    AUGCUG  UCGGAACC UUCgu  g u
||||    ||||||  |||||||| |||||  |  
uuuC    UACGAC  AGUCUUGG AAgca  c g
    -CAG      --        U     -c a 

>mdv1-mir-M5 (-26.64)   [mdv1-miR-M5*:6-27] [mdv1-miR-M5:47-69]

u  ug   C   U        AU  -     guuuaa 
 ca  AAC GUA GCGAUCAC  UG ACacg      a
 ||  ||| ||| ||||||||  || |||||       
 gu  uUG CAU UGCUGGUG  AU UGUgc      a
g  gu   U   C        CU  G     auacau 

>mdv1-mir-M6 (-38.10)   [mdv1-miR-M6-5p:15-36] [mdv1-miR-M6-3p:50-71]

-----------------------------------acg   ug -     U    UG  C     U U     u ac 
                                      ucc  g gaaaa CUGU  UU CGUAG G UCUCg g  a
                                      |||  | ||||| ||||  || ||||| | ||||| |  c
                                      agg  c cuuuU GACA  AA GCGUC C AGAGc c  u
cgaagguaagguacagcgcuguuaguccugcuacauua   gu u     -    GU  A     C U     u aa 

>mdv1-mir-M7 (-40.90)   [mdv1-miR-M7*:8-30] [mdv1-miR-M7:47-69]

---------------------------------------------g         U      GG      C   -Ucu  cc 
                                              gagaacUGU AUCUCG  GAGAUC CGA    cu  u
                                              ||||||||| ||||||  |||||| |||    ||   
                                              uuuuuGACA UAGAGC  CUCUAG GCU    ga  a
gauccuucgaagaugcuaauucgucaagacuccuguguaaaggggg         U      AU      A   caac  cc 

>mdv1-mir-M8 (-47.50)   [mdv1-miR-M8-5p:16-37] [mdv1-miR-M8-3p:58-79]

------------------------------a     ac     c              UU    U  aucuau  u 
                               uuccu  ggaaa cUAUUGUUCUGUGG  GGUU CG      cg u
                               |||||  ||||| ||||||||||||||  |||| ||      ||  
                               gagga  ccuuu GAUAACAAGGCAUC  CCAG Gc      gc c
aagguacgaagccgucagcuuuggcccuuua     --     U              -U    U  -gucau  u 

>ath-MIR771 (-45.90)   [ath-miR771:12-33]

--uaa     u       C    U  U        caaugaucucaauagagugcau 
     auucg caUGAGC UCUG GG AGCCCUCA                      g
     ||||| ||||||| |||| || ||||||||                       
     uaagc guacuug ggac cc ucgggagu                      c
gauug     u       u    u  -        agaugcagaaauguucuagcac 

>ath-MIR472 (-57.00)   [ath-miR472:136-157]

uc          -     u  a      c       c  - -uu   --a   ga      augaau    ug  ---au    g   ga 
  uguauguaug uaugg cg aguagg aaaaucu ac c   ucu   gca  ucaaca      uuug  ga     agau uug  u
  |||||||||| ||||| || |||||| ||||||| || |   |||   |||  ||||||      ||||  ||     |||| |||   
  acauacauaC AUACC GC UCAUCC UUUUaga ug g   aga   cgu  aguugu      gaac  uu     uuug aau  u
cc          C     C  C      U       a  a uuu   acg   ag      ------    gu  guggu    g   gu 

>ath-MIR773 (-37.10)   [ath-miR773:63-83]

         u    -u         au    u  aga    c 
aggaggcaa agcu  gagcaaaua  ugau gc   aguc a
||||||||| ||||  |||||||||  |||| ||   ||||  
ucCUCUGUU UCGA  UUCGUUUgu  acug cg   ucag u
         U    CC         cc    u  aaa    c 

>ath-MIR774 (-40.40)   [ath-miR774:70-90]

uc    c          u              u    auu     c   u 
  auuu agauggcugu uggguaacuaauau uaag   uuggu aau u
  |||| |||||||||| |||||||||||||| ||||   ||||| |||  
  uaaa uCUACCGGUA ACCCAUUGGUUaua auuu   aacca uug a
uu    c          U              u    ---     -   a 

>ath-MIR775 (-43.23)   [ath-miR775:95-114]

u          -    acgu          c       c    uu    -    ucaacuu 
 uuaaacguug cacu    gacauugaaa ugucuuu aaca  ccaa uauu       u
 |||||||||| ||||    |||||||||| ||||||| ||||  |||| ||||       c
 aauuuguaAC GUGA    CUGUAGCUUu acagaaa uugu  gguu auaa       g
a          C    CGAU          u       c    uu    u    cccauaa 

>ath-MIR776 (-47.60)   [ath-miR776:82-102]

 ug  a   u     c    -         uu    ag   a  u     -   u   aa 
u  gg uua agcca gaac ucaauagaa  cuua  auc ug gaaaa cgu gac  g
|  || ||| ||||| |||| |||||||||  ||||  ||| || ||||| ||| |||   
a  cc aau ucggu cUUG AGUUAUCUU  GAAU  uag ac cuuuu gca cug  a
 gu  -   u     a    U         CU    CU   a  -     a   u   cu 

>ath-MIR777 (-39.80)   [ath-miR777:84-105]

          -   a            u       -c      uuau    gu   c 
agagagcaac aaa ucaguguguauu guuaaga  aaaugu    auaa  cgu c
|||||||||| ||| |||||||||||| |||||||  ||||||    ||||  |||  
ucuUUCGUUG UUU AGUUACGCAUaa caauucu  uuuaca    uguu  gcg a
          C   G            u       aa      ----    --   u 

>ath-MIR778 (-74.50)   [ath-miR778:7-27]

-         C                    a       cuccauccuauacagauuuugggacaugu 
 ccgccuUGG UUGGUUUAUGUACACCGagu uguucag                             g
 ||||||||| |||||||||||||||||||| |||||||                             c
 ggcggaacc aaccagauacauguggcuca acaaguc                             c
u         a                    a       aagaaagauauauacuuuggaguugggau 

>ath-MIR779 (-69.50)   [ath-miR779.2:106-126] [ath-miR779.1:142-162]

      -           u     u    a    uuucaa  a      u   c     c               u          
aaugag aguaauauagu gaauc ucga agua      ga gucagc gag uuucu gucaucacuuauuag aaauauagu 
|||||| ||||||||||| ||||| |||| ||||      || |||||| ||| ||||| ||||||||||||||| |||||||| c
uUACUC UCGUUGUAUCG CUUag aguu ucau      cU CAGUUG CUU AAAGG UAGUagugaguaguu uuuauaucu 
      G           U     u    c    ----ua  -      -   U     U               -          

>ath-MIR780 (-65.10)   [ath-miR780.1:129-149] [ath-miR780.2:150-170]

      au        u        u      a        a ------     ----a          u   guuucacaaacaucaacag 
caagau  cagauauu cacgaaga aucugc uaacagcu c      gagga     auugugauuu auc                   c
||||||  |||||||| |||||||| |||||| |||||||| |      |||||     |||||||||| |||                    
guuuUA  GUCUAUAA GUGCUUCU UGGACG GUUGUCGA G      uuccu     uaacacuaaa uag                   u
      CG        -        U      A        C AUCUuu     aucac          -   gcagguauugcuagguacc 

>ath-MIR781 (-42.00)   [ath-miR781:6-26]

       -                   uu     c  a a     a 
ucaaaUU AGAGUUUUCUGGAUACUUA  aguua ua c aagag g
||||||| |||||||||||||||||||  ||||| || | ||||| g
aguuuaa ucucaaaagaccuaugaau  ucaau au g uucuu g
       a                   uu     u  a c     c 

>ath-MIR782 (-39.80)   [ath-miR782:12-32]

           A     A        G      aaauaagaugaaaaggcuauu 
aaccuuuuucu CAAAC CCUUGGAU UUCUUu                     a
||||||||||| ||||| |||||||| ||||||                     u
uuggagaaaga guuug ggaaccua aagaaa                     u
           c     c        a      accgaaguacaacaaguaauc 

>ath-MIR783 (-231.00)   [ath-miR783:269-289]

-                    c                             a        a    a c     u    c                                  a                                 aagaucuggugagaaugg 
 gacacuagucuuaaccauau uuuugucggaagauucaggagaacaugga gagcaaag uucu g aaauc cuua ccaaucaacuucaucaccagaucuuuugucggaa auucaggagaacaugaucguuugguacgaauac                  a
 |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| | ||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||                   
 cugugaucagaauuggugua aaaacagccuucuaaguccuCUUGUACUU CUCGUUUC AAga c uuuag gaau gguuaguugaaguaguggucuagaaaacagccuu uaaguccucuuguacuagcaaaccaugcuugug                  c
u                    a                             G        G    c a     u    u                                  c                                 cagagagaaaggaagaag 

>ptc-MIR171k (-34.40)   [ptc-miR171k:58-78]

    c    u        c  c       uc    uga 
gaua uggc cgguucaa cu aucguag  uuga   a
|||| |||| |||||||| || |||||||  ||||    
CUAU ACCG GCCGAGUU GG ugguauc  aacu   u
    A    C        A  u       ua    uag 

>ptc-MIR403c (-41.42)   [ptc-miR403c:59-79]

--                         cacaacc   cac 
  gguuugugcguggaucugaggccau       guc   u
  |||||||||||||||||||||||||       |||    
  UCAAACACGCACUUAGAUUucggua       cag   a
GC                         -acccac   cac 

>hsa-mir-765 (-33.00)   [hsa-miR-765:69-89]

u      gcug    a  ug  --g    guag  agc       ------        cga 
 uuaggc    auga ag  ga   uuca    ac   ccuuuuc      aagcccua   g
 ||||||    |||| ||  ||   ||||    ||   |||||||      ||||||||    
 aguccg    ugcu uu  cu   aaGU    UG   GGAAGAG      uuuggggu   a
a      --ag    c  gu  agg    --AG  GAA       GAGGUc        caa 

>hsa-mir-770 (-56.70)   [hsa-miR-770-5p:20-42]

      -c     cc   c              GUCA     A      cu 
aggagc  accuu  gag cUCCAGUACCACGU    GGGCC caugag  g
||||||  |||||  ||| ||||||||||||||    ||||| ||||||   
uucucg  ugggg  cuc ggggucguggugua    uccgg gugcuc  g
      uc     -a   c              ---g     -      cg 

>sme-bantam-a (-20.14)   [sme-bantam-a:42-62]

   ug     ac         a   augaua 
uau  guuuu  uagugaucu aga      u
|||  |||||  ||||||||| |||       
auG  CGAAA  AUCACUAGA Ucu      a
   GU     GU         G   aaaaau 

>sme-bantam-b (-27.30)   [sme-bantam-b*:10-30] [sme-bantam-b:43-64]

--------     aaaaC          U A          au 
        cuuua     CGGUUUUCGU G GAUCUUAgau  a
        |||||     |||||||||| | ||||||||||   
        gaagu     GUCGAAAGCG C CUAGAGUcua  u
cuuucgcu     -auUA          U A          cu 

>sme-bantam-c-1 (-25.90)   [sme-bantam-c*:7-28] [sme-bantam-c:39-60]

-   uu            U               
 agu  aAAGGCUUUCAU AUGAUUUUAAaaug 
 |||  |||||||||||| ||||||||||||| u
 uca  UUUUCGAAAGUA UACUAGAGUuuuau 
g   -u            U               

>sme-let-7a (-27.60)   [sme-let-7a:11-32] [sme-let-7a*:55-77]

        caU         U       GA  aa    aag 
aucaaauu   GAGGUAGAA GUUGGAU  CU  ggua   g
||||||||   ||||||||| |||||||  ||  ||||   u
uaguuuaa   UUCCGUCUU UAACUUG  Ga  cuau   a
        AAU         U       UC  ga    aca 

>sme-let-7b (-25.90)   [sme-let-7b:15-36] [sme-let-7b*:48-69]

    ca       uU    -     U        A   aa 
guaa  uuaacaa  GAGG UAGAU GUUGGAUG CUu  u
||||  |||||||  |||| ||||| |||||||| |||  u
cauu  aauuguu  CUUC GUCUA CAACUUAC gaa  u
    -a       CU    U     U        C   au 

>sme-let-7c (-28.60)   [sme-let-7c:15-36] [sme-let-7c*:62-84]

     c     a        -  U  CU         gaagaaa   au a 
ucaua uaacu gaUGAGGU AG GA  CAAAAGGUU       uac  c a
||||| ||||| |||||||| || ||  |||||||||       |||  |  
aguau auuga cUAUUUCG UC CU  GUUUUCCAa       aug  g a
     -     -        A  U  UU         ------a   ag u 

>sme-lin-4 (-31.96)   [sme-lin-4-5p:14-35] [sme-lin-4-3p:64-85]

   a     aaucU     A  C U          uugaccauuaaauu    g 
auc guuau     CCCUG GA C UCGACUGUGU              auca a
||| |||||     ||||| || | ||||||||||              ||||  
uag cgaua     GGGAU CU G AGCUGACACg              uagu a
   c     aaaUU     A  A U          -------------u    a 

>sme-mir-1a (-29.20)   [sme-miR-1a*:5-26] [sme-miR-1a:50-71]

    A    U    GA            a  caa  g 
agcg GCAU UUUC  GGCAUUUCAUag gu   au a
|||| |||| ||||  |||||||||||| ||   ||  
ucgU CGUA AAAG  CUGUAAGGUguc ca   ua a
    A    U    AG            -  -aa  a 

>sme-mir-1b (-24.10)   [sme-miR-1b*:12-33] [sme-miR-1b:52-73]

     cacac  G         A       G  ag    uu 
aacaa     gG CAUAAUUCA GAUAUUC AU  gguu  u
|||||     || ||||||||| ||||||| ||  ||||   
uuguu     CU GUAUUAAGU CUGUAAG Ua  ucaa  g
     -acuu  G         G       G  -a    ug 

>sme-mir-1c (-29.10)   [sme-miR-1c*:14-38] [sme-miR-1c:48-68]

       gag   C          A      GAA     uc 
guuacgu   gug ACAUUAUUCA AACAUU   UCACa  g
|||||||   ||| |||||||||| ||||||   |||||   
uaaugca   caC UGUGAUAAGU UUGUAA   GGUgu  a
       -ga   -          G      ---     ca 

>sme-mir-2a-1 (-26.64)   [sme-miR-2a-1*:14-35] [sme-miR-2a:56-79]

       u  gugA      -   -U   A         uuucua 
guucauu au    GUUCCA GUG  GCU UGAUGUAua      a
||||||| ||    |||||| |||  ||| |||||||||       
uaaguaa ua    CAAGGU CGC  CGA ACUAUauau      a
       u  aUCG      U   CC   C         cuuuaa 

>sme-mir-2a-2 (-26.87)   [sme-miR-2a-2*:15-35] [sme-miR-2a:47-70]

     cuuaauuga      --   U            ug 
guuca         GUUCUA  CGG GUUGUGAUAUAa  a
|||||         ||||||  ||| ||||||||||||  u
uaagu         CAAGGU  GCC CGACACUAUauu  u
     auaaaaUCG      UC   C            ua 

>sme-mir-2b (-29.70)   [sme-miR-2b-5p:12-31] [sme-miR-2b-3p:47-68]

       -gc        UU         CAGu     u 
gguuauu   uuUCAUCA  GUUGGUUGU    uauug a
|||||||   ||||||||  |||||||||    |||||  
ucgauag   AGAGUAGU  UAACCGACA    auaac u
       agU        UU         --CU     u 

>sme-mir-2c (-19.82)   [sme-miR-2c-5p:20-42] [sme-miR-2c-3p:54-75]

uuuc   uu     -acaaaA       -A     U    U     u 
    uuu  caaau       AUCAUCA  UUUGG CUGU AUAaa g
    |||  |||||       |||||||  ||||| |||| ||||| g
    aaa  guuua       UAGUAGU  AAACC GACA Uauuu c
-uac   cu     aauauUC       CA     -    C     u 

>sme-mir-2d (-35.00)   [sme-miR-2d-5p:21-43] [sme-miR-2d-3p:72-92]

     auuu     --c   c        UU     A    C    ga   ug uaac 
gugac    ugccu   uua gGACAUCA  AUUUG CUGU GAUa  uau  g    a
|||||    |||||   ||| ||||||||  ||||| |||| ||||  |||  |     
cacug    augga   aau CCUGUAGU  UAAAC GACA CUau  aug  u    u
     ----     aua   -        -U     C    -    -g   gu uuau 

>sme-mir-7a (-21.00)   [sme-miR-7a-5p:8-30] [sme-miR-7a-3p:47-69]

     uuU   A     UU  U         uu   ua 
cauaa   GGA GACUA  GA UUAGUUGAa  ggu  a
|||||   ||| |||||  || |||||||||  |||   
guAUU   CCU CUGAU  CU AGUCAACUu  uca  u
     ---   A     --  U         --   uu 

>sme-mir-7b (-34.10)   [sme-miR-7b:24-46] [sme-miR-7b*:67-91]

    --uaac          aa   U      C      UU       caga     u 
ggaa      acagaaaaau  uca GGAAGA UGUCGA  UCGUUGU    gcauu u
||||      ||||||||||  ||| |||||| ||||||  |||||||    |||||  
ucuu      uguuuuuuuA  GGU CCUUCU AUAGUU  AGCAACa    uguaa u
    caaagu          --   -      A      UU       ---a     a 

>sme-mir-7c (-25.90)   [sme-miR-7c:21-42] [sme-miR-7c*:54-75]

u  a   guuu     uu  U      CU  U         Aac  a 
 ga uaa    aauau  ug GGAAGA  GA GAUUUGCUG   gc u
 || |||    |||||  || ||||||  || |||||||||   || g
 cu auu    uuaua  AC UCUUCU  CU CUGGGCGAC   cg c
a  a   -auu     uu  -      UU  U         ---  a 

>sme-mir-8a (-15.76)   [sme-miR-8a*:4-24] [sme-miR-8a:45-67]

    A     -A   A      UUA   cagaau 
aauG CAUCG  AUC GACAGU   aga      u
|||| |||||  ||| ||||||   |||      u
uuaC GUAGC  UGG CUGUCA   Ucu      a
    C     AA   A      UAA   aaaaua 

>sme-mir-10b (-34.20)   [sme-miR-10b:15-36] [sme-miR-10b*:76-93]

         au  gA   C  U    C   G       --     --   ugu 
cugucaccg  cu  ACC UG AGAU CGA UUUGAuu  aaugc  caa   u
|||||||||  ||  ||| || |||| ||| |||||||  |||||  |||   g
gauaguggu  gA  UGG AC UCUA GCU aaacuaa  uuacg  guu   a
         -c  AG   A  U    A   a       cu     aa   uug 

>sme-mir-12 (-36.20)   [sme-miR-12:19-40] [sme-miR-12*:67-89]

auuuu    auc   c c      UU          U    aaau      ag 
     aucc   gcu a UGAGUA  CUAUCAGGAG CGAa    gcguua  u
     ||||   ||| | ||||||  |||||||||| ||||    ||||||  u
     uagg   cga U AUUCAU  GGUAGUUCUC GCuu    ugcaau  a
-uuuu    aaa   a A      UU          U    ----      ca 

>sme-mir-13 (-29.60)   [sme-miR-13*:1-22] [sme-miR-13:37-58]

    -       --            -   a 
GAGC CUUUGGC  GGCUGUGAUAUg aua u
|||| |||||||  |||||||||||| |||  
uuCG GAAAUCG  CUGACACUAUac uau u
    A       UA            a   a 

>sme-mir-745 (-27.40)   [sme-miR-745*:17-37] [sme-miR-745:55-77]

--auuaacuc   ga      -       -    C   A   c  aua 
          ugu  ugaUAC GCUCUUA CCAG UAG AUg ug   a
          |||  |||||| ||||||| |||| ||| ||| ||   u
          aca  acUGUG CGAGAAU GGUC GUC Uac ac   u
caaacuuucc   -a      U       U    C   G   -  cau 

>sme-mir-746 (-32.10)   [sme-miR-746-5p:22-43] [sme-miR-746-3p:87-108]

---    --aa    cauaaca  uaG  G    A      U    AUu    gaaa   aaau       u 
   ugau    uucg       uc   CC GAUA AUCCUG GUGC   gaua    gug    gauuuua u
   ||||    ||||       ||   || |||| |||||| ||||   ||||    |||    |||||||  
   acua    aagc       ag   GG CUAU UGGGAC CACG   cuau    cau    cuagaau c
acu    guac    -----aa  uUA  G    A      -    -AU    --ac   ----       a 

>sme-mir-31a (-31.30)   [sme-miR-31a:19-41] [sme-miR-31a*:65-85]

uuuua     a    uuaA  C   A       A       caac     g 
     uuguu uguu    GG AAG UGUUGGC UAACUGA    aauuc a
     ||||| ||||    || ||| ||||||| |||||||    |||||  
     aacaa acga    CC UUC ACGAUUG AUUGACu    uuagg a
----a     a    uagA  A   -       C       uuaa     a 

>sme-mir-31b-1 (-27.20)   [sme-miR-31b:14-36] [sme-miR-31b-1*:52-73]

       auga  A  C     G    C       A   acu 
auugaua    ca GG AAGAU CUGG AUAGCUG uaa   a
|||||||    || || ||||| |||| ||||||| |||    
uaacuau    gU CC UUCUA GACU UAUCGAC auu   u
       auaa  C  U     G    -       c   auu 

>sme-mir-36a (-29.70)   [sme-miR-36a*:14-33] [sme-miR-36a:53-73]

   c     guuu     C   -         UU     uua 
agc acagu    UGAUG AUG CUACUUGGU  uguug   u
||| |||||    ||||| ||| |||||||||  |||||   u
uug uguca    AUUAC UAC GAUGGGCCA  acaau   a
   u     acau     U   A         CU     uau 

>sme-mir-61a (-32.10)   [sme-miR-61a*:25-46] [sme-miR-61a:60-82]

uuuuua   --ua       uugau     UU     -       GCA      u 
      gaa    gaaacuc     aCAGU  GUGAG UUUCUAG   Uauaga u
      |||    |||||||     |||||  ||||| |||||||   ||||||  
      cuu    uuuugag     UGUCA  CACUU AAAGAUC   GUaucu u
---uua   caaa       caugu     UU     G       --A      u 

>sme-mir-71a-1 (-29.90)   [sme-miR-71a:17-38] [sme-miR-71a-1*:52-73]

auuuuaaau     aa         CG           a gcu 
         gcaug  UGAAAGACA  GGUAGUGAGAU a   a
         |||||  |||||||||  ||||||||||| |    
         ugugc  AUUUUCUGU  CCGUUACUCUa u   u
----uuuau     aA         AA           c aua 

>sme-mir-71a-2 (-29.60)   [sme-miR-71a:12-33] [sme-miR-71a-2*:46-67]

-u      uaac               GUG   U       
  uggaua    UGAAAGACACGGGUA   AGA auggau 
  ||||||    |||||||||||||||   ||| ||||| u
  acuuau    ACUUUCUGUGCUUAU   UCU Uacuuu 
gc      uuaU               --A   C       

>sme-mir-71b (-34.37)   [sme-miR-71b:16-37] [sme-miR-71b*:61-80]

-----         acuc             GG   U       auauuauc 
     ugauucagu    uuUGAAAGACACA  UAG GGGACag        u
     |||||||||    |||||||||||||  ||| |||||||         
     acuaaguua    aaGCUUUUUGUGU  AUC UCCUguu        a
uacua         ccaa             -A   U       cgaaaaua 

>sme-mir-71c (-26.10)   [sme-miR-71c:11-32] [sme-miR-71c*:55-77]

gua    ucuU       A              au      u 
   guuu    GAAAGAC UGGGUAGUGAGAUu  uuaaau a
   ||||    ||||||| ||||||||||||||  |||||| a
   cgaa    CUUUUUG ACUUAUUACUCUaa  aauuua a
---    uAUU       A              --      u 

>sme-mir-79 (-25.90)   [sme-miR-79-5p:17-39] [sme-miR-79-3p:56-78]

uuga     aa   -cuU       C  C            a  ga 
    aacau  ucu    CUUUGGU AU UGGCUUUGUGAu ga  a
    |||||  |||    ||||||| || |||||||||||| ||  a
    uugua  aga    GAAACCA UA AUCGAAAUGcua cu  u
uagg     aa   uCGU       U  A            -  au 

>sme-mir-87a (-34.60)   [sme-miR-87a-5p:15-38] [sme-miR-87a-3p:60-79]

---uu     -    uucA        UAA       AA    aug   g 
     ugcca guau    ACACUUGG   UUUGCUC  ACCa   ucc a
     ||||| ||||    ||||||||   |||||||  ||||   ||| a
     acggu uaua    UGUGAACU   AAACGAG  Uggu   agg a
aaauu     g    --uA        UUG       --    cug   a 

>sme-mir-87b (-26.10)   [sme-miR-87b-5p:21-44] [sme-miR-87b-3p:70-90]

uuc     -- g   u  ugc      C   A         AAU     uu  u   a 
   auuga  u cgu ga   uUCAUU GAA UUUUGCUCA   CCauu  ga aau a
   |||||  | ||| ||   |||||| ||| |||||||||   |||||  || |||  
   uggcu  a gca cu   GAGUAA CUU GAAACGAGU   Gguag  cu uua u
--c     ua g   -  uua      A   C         ---     --  u   a 

>sme-mir-92 (-23.00)   [sme-miR-92*:11-32] [sme-miR-92:53-72]

-     cuaa       A  U         G    --c   ug 
 aauug    aUGGUAA UA CUAGUGCAA UCua   agg  a
 |||||    ||||||| || ||||||||| ||||   |||   
 uuaac    uaCUAUU AU GAUCACGUU AGau   ucu  a
u     auac       A  U         -    uuu   uu 

>sme-mir-124a (-29.60)   [sme-miR-124a*:13-35] [sme-miR-124a:52-72]

u        a  U  U    A    GA         auuua 
 ucaaucag ug GC UUUA CGCG  GCUUUAGUa     a
 |||||||| || || |||| ||||  |||||||||      
 aguuaguu aU CG AAGU GCGC  CGGAAUcau     c
g        c  U  U    G    -A         augua 

>sme-mir-124b (-30.30)   [sme-miR-124b*:16-38] [sme-miR-124b:50-71]

guau    gaa     -        AA        U   -  a 
    ccau   aauuU GCAUUUAC  CGUGUCUU AGU uc u
    ||||   ||||| ||||||||  |||||||| ||| ||  
    ggua   uuaAG CGUAAGUG  GCACGGAA Uca ag g
auuu    -aa     U        GC        -   c  u 

>sme-mir-124c-1 (-33.30)   [sme-miR-124c-1*:19-40] [sme-miR-124c:52-72]

ug     a   uuua  a   C     U    A    U   ag 
  auccu uuc    cu GCG UCACC CGUG CCUU GUc  u
  ||||| |||    || ||| ||||| |||| |||| |||  g
  uagga aag    gA CGU AGUGG GCAC GGAA cag  u
ag     -   --ua  C   A     C    -    U   gu 

>sme-mir-125a (-35.02)   [sme-miR-125a:19-40] [sme-miR-125a*:58-77]

--c   ug            UC     G    UU         uguuu 
   ugu  ucuguauuuaua  CCUGA ACCA  GACUGCAUu     g
   |||  ||||||||||||  ||||| ||||  |||||||||     a
   acg  agguauaggugu  GGACU UGGU  UUGAUGuaa     g
cuu   --            UA     A    UU         cuuug 

>sme-mir-125b (-25.10)   [sme-miR-125b:16-37] [sme-miR-125b*:56-78]

-   a   au    caU C       C     A    U a a    a 
 gca guu  ucga   C CUGAGAU AUAAU UGCC g g uuug a
 ||| |||  ||||   | ||||||| ||||| |||| | | ||||  
 cgu caa  aguu   G GACUCUG UAUUA AUGG c c aaac c
a   -   au    AAU A       U     G    - - -    g 

>sme-mir-133b (-29.60)   [sme-miR-133b-5p:17-35] [sme-miR-133b-3p:51-70]

--a        uuguau      CUA     U A     a   g 
   aaacacuu      uUGCUG   GAUGG G AUCaa acc u
   ||||||||      ||||||   ||||| | ||||| ||| u
   uuugugaa      aACGAC   CUACC C UGGUU ugg u
cua        -cuuuu      CAA     - C     c   g 

>sme-mir-184 (-23.67)   [sme-miR-184*:12-35] [sme-miR-184:59-78]

        uuaAC     U   U         UCAcauuuauua 
gauuuuca     UCCUU GUG AUCUCCGUU            u
||||||||     ||||| ||| |||||||||             
uuaaaagu     AGGAA CGU UGGAGGCAG            a
        uuauA     U   U         gucauauuuacu 

>sme-mir-190a (-29.10)   [sme-miR-190a-5p:12-34] [sme-miR-190a-3p:44-64]

       uu gA              AU     Aua 
gauuaac  c  GAUAUGUUUGGUUA  UGGUG   g
|||||||  |  ||||||||||||||  |||||   g
uuaauug  g  CUAUACGAGCCAGU  ACCAc   u
       uu AC              -C     caa 

>sme-mir-190b (-26.30)   [sme-miR-190b:14-36] [sme-miR-190b*:56-78]

     u   -au           U    UAU     ---------   g 
gcacu caa   cgUGAUAUGUU GGUU   UGGUG         Agu u
||||| |||   ||||||||||| ||||   |||||         |||  
cguga guu   GUGCUAUGUAA CCGA   ACCAc         uca a
     -   acU           U    -UU     aaucuuuag   a 

>sme-mir-747 (-21.10)   [sme-miR-747-5p:14-36] [sme-miR-747-3p:60-82]

   g   u   c       C UC       U     ga   a   u 
uca uuc guu aUAAUCU A  UGGUAAU GAAGU  ucu uuu u
||| ||| ||| ||||||| |  ||||||| |||||  ||| ||| u
agu aag uaA UGUUAGA U  ACUAUUA CUUCa  aga aaa a
   a   c   -       C UU       -     -a   a   a 

>sme-mir-219 (-31.59)   [sme-miR-219:15-37] [sme-miR-219*:65-85]

        u    c    U U    A         --CAa   cuagaau 
cgguaauu auug UGAU G CCAU CGCAGUUCU     ggu       c
|||||||| |||| |||| | |||| |||||||||     |||        
gucguuaa uaac ACUA C GGUA GCGUUAAGA     ccg       g
        -    a    - U    A         Auuug   uuaagca 

>sme-mir-277a (-30.30)   [sme-miR-277a*:19-39] [sme-miR-277a:55-76]

ugg        uu   -uuA        U   A      U    aa 
   uaaacugu  ucu    CGUAUUCG UGG GCAUUU uaca  c
   ||||||||  |||    |||||||| ||| |||||| ||||  a
   auuugaca  aga    GUAUAGGC AUC CGUAAA augu  a
--a        -u   uaCA        U   A      U    aa 

>sme-mir-277b (-31.00)   [sme-miR-277b-5p:14-33] [sme-miR-277b-3p:49-70]

-    g    ga     AU    -      GC    g  aa 
 gguu uauu  ucUUG  CAGA AAUGCA  UUCa ag  a
 |||| ||||  |||||  |||| ||||||  |||| ||   
 ccga guaa  AGAAC  GUCU UUACGU  AAgu uc  u
u    a    -a     CG    A      AA    g  ac 

>sme-mir-277c (-25.50)   [sme-miR-277c*:14-35] [sme-miR-277c:55-76]

       auauua            -U      AU    -   aa 
aucauuu      AUCAUAUCAGAU  UGCAUU  Uauu aug  u
|||||||      ||||||||||||  ||||||  |||| |||  u
uaguaaa      UAGUAUGGUCUA  ACGUAA  AUaa uac  a
       -guuua            UU      --    c   aa 

>sme-mir-278 (-37.56)   [sme-miR-278*:17-39] [sme-miR-278:65-84]

         cuu   c        C    UU    A  U     uucaag 
ggucgugau   uga UUCGAAUG UAUU  CACC GA gcuug      u
|||||||||   ||| |||||||| ||||  |||| || |||||      u
cuagcauua   auu aAGCUUAC AUGA  GUGG CU cgaac      c
         ---   a        A    GG    -  -     ugacaa 

>sme-mir-281 (-34.50)   [sme-miR-281-5p:14-33] [sme-miR-281-3p:65-83]

uuac     aca         -         G   ca u   -    c 
    agcuu   aUGAAGAGC UAUUCAUGA GUg  g aua auga a
    |||||   ||||||||| ||||||||| |||  | ||| |||| a
    ucgaa   uaCUUCUCG AUAGGUACU Uac  c ugu uacu u
aaua     -aa         U         G   cc u   c    u 

>sme-mir-67 (-27.50)   [sme-miR-67-5p:12-33] [sme-miR-67-3p:46-68]

-    aau    G    A   -UAU       U        
 gugu   auua CCUC UUC    GGGUUGU AUgaugc 
 ||||   |||| |||| |||    ||||||| |||||| a
 uaca   uaaU GGAG AAG    UCCAACA Uacuaua 
g    -gc    G    C   UACC       C        

>sme-mir-748 (-30.00)   [sme-miR-748*:14-36] [sme-miR-748:46-64]

caa     -uua gU            G     A    a 
   ucaca    u  CCUUAUUAUAUU CUGUC AGUa g
   |||||    |  |||||||||||| ||||| |||| c
   agugu    a  gGAGUAAUGUGA GGCAG Ucau a
-aa     uaaa ug            A     G    c 

>sme-mir-749 (-41.00)   [sme-miR-749:4-24]

          ---------      ---      --GU   g g      cu 
aucGCUGGGA         UGAGCC   UCGGUG    ccg g ugcagg  u
||||||||||         ||||||   ||||||    ||| | ||||||  c
uagcgaccuu         gcuugg   agccac    ggc u augucc  a
          uccaccuua      uga      aguu   - g      aa 

>sme-mir-750 (-35.10)   [sme-miR-750-5p:19-41] [sme-miR-750-3p:67-89]

-a   aa     a    c  C        GU    UUUAG   -     cac  uc 
  uug  aucag uuuu aG ACUGGAAG  UUGG     CUg cugug   cg  a
  |||  ||||| |||| || ||||||||  ||||     ||| |||||   ||   
  agc  uaguc gaaa UC UGACCUUC  AAUC     GAC gacac   gc  u
ca   ga     -    -  U        UC    ---UA   U     --a  ug 

>sme-mir-751 (-8.90)   [sme-miR-751:58-78]

acua        --uu  -ug     ---uccg    aau    c 
    auuuuguu    cu   uaaac       auag   gauu a
    ||||||||    ||   |||||       ||||   |||| u
    ugaaACAG    GG   GUUUG       uauc   uuag a
-uua        UACC  UAA     UACaaaa    -ag    a 

>sme-mir-752 (-30.60)   [sme-miR-752-5p:27-47] [sme-miR-752-3p:71-88]

a      -au  -   -    a   ga     U    A -         A    aguu 
 uugauu   ag uua ucua uuu  aaACC CCAA G UGAUUGUGA Uaaa    u
 ||||||   || ||| |||| |||  ||||| |||| | ||||||||| ||||    u
 agcuaa   uc agu agau gaa  UUUGG GGUU C ACUGAcacu auuu    a
a      cau  u   g    -   ag     U    A G         a    aauu 

>sme-mir-753 (-38.10)   [sme-miR-753:15-34]

u       -    u           U           u 
 aaaguau auuu aGAGCUUGGAU GUGAUCUCAua a
 ||||||| |||| ||||||||||| |||||||||||  
 uuucaua uaaa ucucgaacuua uacuagaguau u
u       a    u           u           u 

>sme-mir-754a (-27.00)   [sme-miR-754a:10-29]

a  -  --gc             U  UU        u 
 cc ca    auGUUGCUUGGGG UA  ACUAuauu a
 || ||    ||||||||||||| ||  ||||||||  
 gg gu    uauaacgaacuuc au  ugauauaa u
a  u  agac             u  uu        u 

>sme-mir-755 (-27.40)   [sme-miR-755-5p:10-29] [sme-miR-755-3p:43-66]

-uuuc      -    CU    U       C    u 
     uguagU GGAG  AUUG AUUUCAC gugg u
     |||||| ||||  |||| ||||||| ||||  
     gCAUCA CCUC  UAAC UAGAGUG uauc g
auuua      A    AU    U       c    g 

>sme-mir-756 (-27.80)   [sme-miR-756:18-39] [sme-miR-756*:60-81]

uaaaa  ug     aauC    U       UU       ---c    uu 
     gu  ggaua    GAUA GUGGUAA  UGGAUGA    auaa  a
     ||  |||||    |||| |||||||  |||||||    ||||   
     ca  cuuau    CUAU UACUAUU  ACCUACu    uguu  a
--gua  gu     aaAA    U       CU       cuaa    uc 

>sme-mir-277d (-23.72)   [sme-miR-277d-5p:14-34] [sme-miR-277d-3p:48-69]

     ucaaaaa G        --UU        U   uaa 
aagca       u UUGGUUAG    GUGCAUUU Cau   a
|||||       | ||||||||    |||||||| |||    
uucgu       a AACCGGUC    UACGUAAA gua   u
     -ugauaa G        UAUU        U   uua 

>cel-mir-784 (-28.70)   [cel-miR-784:14-35]

u   ac  -   c UG  A    C GC          -a   ca 
 ucg  gu cca g  GC CAAU U  GUACGUAGAa  gau  a
 |||  || ||| |  || |||| |  ||||||||||  |||   
 agu  ca ggu c  cg guug a  cauguaucuu  cug  a
a   ga  c   c gu  c    u aa          ca   aa 

>cel-mir-785 (-36.26)   [cel-miR-785:59-80]

    uu    u    c   a         uu      a   gaaacc 
gcuc  uuuc cacc auc gcacagaau  uucgcu aca      u
||||  |||| |||| ||| |||||||||  |||||| |||      c
cgag  aaag gugg uAG UGUGUUUUG  AAGUGA Ugu      a
    -u    -    -   A         UU      A   aacaaa 

>cel-mir-786 (-36.70)   [cel-miR-786*:16-38] [cel-miR-786:54-76]

     -a  uc     C        G UG       U    aaag 
gggau  gu  ccgau GAAUAUCA U  GGGUAUU ACaa    a
|||||  ||  ||||| |||||||| |  ||||||| ||||     
cucua  ua  ggcUA CUUGUAGU A  CCCGUAA Uguu    c
     ag  gu     A        A GU       -    aaaa 

>cel-mir-787 (-39.70)   [cel-miR-787:54-76]

     -     u             --au    u       -  uc 
gaugu aucag ggacgaaagauac    acga cuuacau cu  a
||||| ||||| |||||||||||||    |||| ||||||| ||  a
uuaca uaguc ucuGCUUUCUAUG    UGCU GAAUgua gg  a
     c     -             AUUU    C       u  ua 

>cel-mir-788 (-32.40)   [cel-miR-788:10-33] [cel-miR-788*:48-65]

   c          --      CU       G    guuc 
gcu acuuuUCCGC  UUCUAA  UCCAUUU CAGa    a
||| ||||||||||  ||||||  ||||||| ||||     
uga ugaaaagguG  AAGAUU  AGGUAAA Gucu    a
   u          CU      --       G    aaug 

>cel-mir-789-1 (-49.10)   [cel-miR-789:60-82]

u    -  aa   a        a        a  a      -   aag 
 gucc ug  ggc ggcaauug ugacccag ca ggacua auc   a
 |||| ||  ||| |||||||| |||||||| || |||||| |||   u
 cggg gc  ccg cUGUUAAC ACUGGGUC GU CCUgau uag   u
a    c  cc   g        C        C  C      c   cug 

>cel-mir-789-2 (-62.80)   [cel-miR-789:60-82]

u    -  aa   g        a                   uca  a 
 gucc ug  ggc gacaauug ugacucaggcagggacuaa   ug u
 |||| ||  ||| |||||||| |||||||||||||||||||   || u
 cagg gc  ccg cUGUUAAC ACUGGGUCCGUCCCUgauu   gc g
a    c  cc   g        C                   -ua  u 

>cel-mir-790 (-34.22)   [cel-miR-790:6-27]

     C       -UC  G   A      uuuca 
gccgg UUGGCAC   GC AAC CCGCGa     c
||||| |||||||   || ||| ||||||     u
cggcc aacugug   cg uug ggcgcu     u
     a       ucu  a   c      caaua 

>cel-mir-791 (-32.70)   [cel-miR-791:52-74]

    cu      a       --  uu  a         caa    
gaac  ucgauu ccuuauc  cg  gu gccaaaguu   cga 
||||  |||||| |||||||  ||  || |||||||||   || a
uuug  agcuaA GGAAUAG  GC  CA CGGUUUcaa   gcg 
    uu      C       AC  CU  -         -cg    

>cel-mir-792 (-32.20)   [cel-miR-792:55-77]

    ug uc              c  a     uag         a 
aagu  g  aacguuugagaguu aa agauu   caauuuuau c
||||  |  |||||||||||||| || |||||   |||||||||  
uuua  c  uugcAGACUUUCAA UU UCUAA   GUUaaagug g
    gu uu              C  C     --A         a 

>cel-mir-793 (-33.10)   [cel-miR-793:56-77]

u     --   aaa             uu    a   caa     a 
 gguug  gua   gucuguuuaacua  guac uca   uuuuc c
 |||||  |||   |||||||||||||  |||| |||   ||||| u
 ccaac  cau   cAGACAGAUUGAU  UAUG AGU   aaaag g
a     au   aua             UC    G   -ua     c 

>cel-mir-794 (-27.10)   [cel-miR-794:15-36]

    gcgu    c        AU  U    G   C   g  a 
cuga    gucu uUGAGGUA  CA CGUU UCA Uuc ca a
||||    |||| ||||||||  || |||| ||| ||| ||  
gacu    cgga agcucuau  gu gcaa agu aag gu g
    -auu    a        cu  u    a   u   -  u 

>cel-mir-795 (-33.50)   [cel-miR-795:15-38]

     --   a    c       G        G   GC    uac 
gaaac  guu ccug UGAGGUA AUUGAUCA CGA  UUga   c
|||||  ||| |||| ||||||| |||||||| |||  ||||    
uuuug  cga ggac gcuucau ugacuagu gcu  aacu   c
     uu   c    u       a        -   aa    ugc 

>cel-mir-796 (-35.50)   [cel-miR-796:16-38]

     aa       c        A UU      A    -   ca 
acucu  ugacaag UGGAAUGU G  GAGGUU GUAA aag  c
|||||  ||||||| |||||||| |  |||||| |||| |||  u
ugaga  acuguuc gccuugca c  uuccaa cauu uuc  a
     aa       a        - cg      a    g   au 

>cel-mir-797 (-28.40)   [cel-miR-797:15-39] [cel-miR-797*:56-77]

   c   ugg     A      C  UCA           a  cau 
cgu caa   acgaU UCACAG AA   CAAUGAGAAGA ua   c
||| |||   ||||| |||||| ||   ||||||||||| ||    
gua guu   ugcUA AGUGUC UU   GUUACUUUUcu au   u
   a   -ua     A      -  -UG           c  aga 

>cel-mir-798 (-17.30)   [cel-miR-798:50-70]

       u  u  ag    -   a     u   a    u 
uacuguu ca gu  gugu uaa guuug aca gaag u
||||||| || ||  |||| ||| ||||| ||| |||| a
augacgA GU CA  UAUA AUU CGAAU ugu cuuu g
       -  -  GU    C   C     -   -    u 

>cel-mir-799 (-28.70)   [cel-miR-799:58-79]

       a  uu       cg      aaa  u    u     -  aa 
guuuuuc au  uuuucac  guuuua   ag gguu cacau uc  u
||||||| ||  |||||||  ||||||   || |||| ||||| ||   
caaaagg ua  aaaGGUG  CGAAAU   UC CCAA GUgua ag  a
       c  -u       AU      -AG  -    -     c  aa 

>cel-mir-800 (-54.70)   [cel-miR-800:48-69]

        u               a       cuu 
acggcggc gacaauuuccgaguu ggccacu   a
|||||||| ||||||||||||||| |||||||   u
ugccGCCG CUGUUAAAGGCUCAA Ccgguga   a
        U               A       cua 

>mmu-mir-804 (-28.60)   [mmu-miR-804:60-81]

  -    -     ca   --u     uu       ccc   ua  c    u 
cc cuac acauc  ucu   ugagg  acaacuu   cag  ga uguu c
|| |||| |||||  |||   |||||  |||||||   |||  || ||||  
gg ggug uguag  AGG   ACUCC  UGUUGAG   GUu  cu acag c
  c    g     -a   UCC     -U       --U   -c  u    u 

>mmu-mir-741 (-31.60)   [mmu-miR-741:45-67]

u             u     c  a      aaau 
 ugaucuacguaga uggua cu ucaugu    c
 ||||||||||||| ||||| || ||||||    a
 auuAGAUGUAUCU ACCGU GA AGUacg    u
a             U     A  G      aaug 

>mmu-mir-742 (-25.70)   [mmu-miR-742*:6-26] [mmu-miR-742:41-62]

    c      -      U   AA    g  a 
ugcu UACUCA CAUGGU GCU  UCAc ug a
|||| |||||| |||||| |||  |||| || g
augA AUGGGU GUACCA CGA  AGug au u
    A      C      C   -A    g  g 

>mmu-mir-743a (-23.00)   [mmu-miR-743a:38-59]

--  g       a      c  g    guuu 
  cu uauucag uuggug cu ucau    a
  || ||||||| |||||| || ||||     
  gA AUGAGUC AACCAC GA AGua    u
au  G       G      A  A    agaa 

>osa-MIR807a (-108.10)   [osa-miR807a:213-233]

       c       a   a        c          u        cc  a     caau   -au           ccagcc  c      a  ------           cac   gacuug       ca 
aaccaca uaucaau aau gauucacc gugagaugac ugguuguu  ac uagga    gac   gcauccuauua      au ucauga au      uaauaggaugc   guc      guuguuc  c
||||||| ||||||| ||| |||||||| |||||||||| ||||||||  || |||||    |||   |||||||||||      || |||||| ||      |||||||||||   |||      |||||||   
uuggugu auaguua uua CUAAGUGG CACUCUACUG accaauaa  ug auccu    cug   cguaggauaau      ua aguacu ua      auuauccuacg   cag      uaacagg  a
       u       c   C        A          C        aa  g     acuc   cac           ------  a      c  ccgacc           -ua   ------       au 

>osa-MIR806a (-102.44)   [osa-miR806a:199-220]

    uau               c                           aa             a           c   aaauuuaaguaauuauuuauucuuuucauacauuugauucauuguu 
uacg   auacucucuccguuu aaaauguuugacaccguugacuuuuua  uacguguuugacc uucgucuuauu aaa                                              a
||||   ||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||| ||||||||||| |||                                               
gugu   uaugagggaggcaaa uuuuacaaacuGUGGCAACUGAAAAAU  GUGUAcaaauugg aagcagaauaa uuu                                              a
    --u               a                           -C             c           -   aaaaaaaaacuuuaugcauuuugauauacacauguacuuucauaua 

>osa-MIR806b (-79.50)   [osa-miR806b:181-202]

     a                       a      g       a           c          aaguaauuauuuauucuuuuuauaucauuugauucauugu 
ucaaa uguuugacaccguugacuuuuua guacgu uuugacu uucgucuuauu aaaaaaauuu                                        u
||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||                                         
aguuu acaaacuGUGGCAACUGAAAAAU CGUGUA gaacuga aagcagaauaa uuuuuuuaaa                                        a
     g                       -      a       c           u          cacuuuauacauuuuaauauacacauguacuuucauauaa 

>osa-MIR806c (-119.44)   [osa-miR806c:209-230]

    aua  uu    u       c        a                                a                             aaguaauuauuuauuuuuuucauaucguuugauuuauugu 
gaag   gc  guaa guacucc uccguuuc aaauguuugacaccguugacuuuuuaguacgu uuugaucauucgucuuauucaaaaaauuu                                        u
||||   ||  |||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                                        a
uuuc   ug  uauu uaugagg aggcaaag uuuacaaacuGUGGCAACUGAAAAAUCGUGUA aaacugguaagcagaauaaguuuuuuaaa                                        a
    -aa  -u    -       u        c                                c                             auacuuuauacauuuugauauacacauguacuuucauaua 

>osa-MIR806d (-99.74)   [osa-miR806d:207-228]

 uc   -cc    gaa           -   c                    g      a             a  c         -      uuuaaauaauuauuuauucuuuucauaucauuugauucauugu 
c  ccu   gucc   auacucccucc uuu aaaauguuugauaccguuga uuuuua uacguguuugacc uu guuuuauuc aaaaaa                                           u
|  |||   ||||   ||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||| || ||||||||| ||||||                                            
g  gga   uagg   uaugagggagg aaa uuuuacaaacuGUGGCAACU AAAAAU GUGUAcaaacugg aa cagaauaag uuuuuu                                           a
 gu   uuu    gaa           c   a                    G      C             c  u         a      uaacacuuuauacauuuugauauacacguauacuuucauauaa 

>osa-MIR806e (-120.30)   [osa-miR806e:200-221]

u    ua       a        a                                                    ca        aa  aauuauuaauucuuuucuuaucauuuaauuuauuguu 
 uagg  auacucc uccguuuc aaauguuugacgccguugacuuuuuagcauauguuugaccguucgucuuauu  aaaaauuu  gu                                     a
 ||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  ||                                      
 auuu  ugugagg aggcaaag uuuauaaacuGUGGCAACUGAAAAAUCGUGUAcaaacuggcaagcagaauaa  uuuuugaa  ca                                     a
g    gg       g        c                                                    -a        aa  cuuuauacauuuuaauauacggauguauuuuuauaua 

>osa-MIR806f (-123.50)   [osa-miR806f:193-214]

                                           u            c                  a     acacuuaauaauucuuuuccuaucauuugauucauugu 
auacucccuccguuucggaauguuugacgccguugacuuuuua uacauguuugac guucgucuuauucaaaaa uuuug                                      u
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||                                      a
uaugagggaggcaaagcuuuauaaacuGUGGCAACUGAAAAAU GUGUAcaaacug caagcagaauaaguuuuu aaaau                                      a
                                           C            a                  g     acuuuauacauuuuaauauacggauguacuuuuauaua 

>osa-MIR806g (-117.10)   [osa-miR806g:193-214]

                               c                        a            c      a   a  aauuauuuauucuuuuuauaucauuugauucauuguu 
ugcucccuccguuucaaaauguuugacaccg ugacuuuuuaguacguguuugauc uucguuuuauuc aaaaaa uua gu                                     a
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||| ||| ||                                      
augagggaggcaaaguuuuacaaacuGUGGC ACUGAAAAAUCGUGUAcaaacugg aagcagaauaag uuuuuu aau ca                                     a
                               A                        c            -      c   -  cuuuauacauuuugauguacacauguacuuucauaua 

>osa-MIR806h (-123.00)   [osa-miR806h:205-226]

     ----       --g               g        a                 u                               a   aaguaauuauuaauucuuuuccuaucauuugauucauugu 
cugaa    auagaua   uacucccuccguuuc aaauguuu acgccguugacuuuuua cauauguuugaccguucgucuuauucaaaaa uuu                                        u
|||||    |||||||   ||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||                                        a
gacuu    uauuugu   augagggaggcaaag uuuacaaa uGUGGCAACUGAAAAAU GUGUAcaaacugguaagcagaauaaguuuuu aaa                                        a
     cgcu       aug               a        c                 C                               g   acacucuauacauuuuaauauacggauguauuuuuauaua 

>osa-MIR807b (-82.50)   [osa-miR807b:122-142]

    u             u         c    c      u        c              ----cca  c 
gaau gauucaccuguga auggcgugg uguu cacuua gaugagga auggcauccuauua       gc a
|||| ||||||||||||| ||||||||| |||| |||||| |||||||| ||||||||||||||       ||  
uuua CUAAGUGGACACU UACUGCacc acaa guggau cugcucuu uaccguaggauaau       cg u
    C             C         a    u      c        a              uaaaaca  c 

>osa-MIR807c (-119.60)   [osa-miR807c:141-161]

                                c    u                     g  ca  a               ----acaa  c 
auaaaaucauacuaucaaugaauggauucacc guga augacgugguuguuccacuua ga  ag acguggcauccuauu        gc a
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||  || |||||||||||||||        ||  
uguuuuggugugauaguuacuuaCCUAAGUGG CACU UACUGCaccaacaagguggau cu  uc ugcaccguaggauaa        cg u
                                A    C                     a  ac  c               cuaaaaca  c 

>osa-MIR808 (-112.90)   [osa-miR808:104-125]

                               a                                        gau 
acuuccuccguuucacaauguaagucauucu gcauuuuccacauucauauugauguuaaugaaucuagaua   a
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
ugagggagguaaaguguuacauucaguAAGA UGUAAAGGGUGUAAGUAuaacuacaauuacuuagaucugu   u
                               A                                        aua 

>osa-MIR809a (-95.30)   [osa-miR809a:110-131]

-ug                              a            a           g            auau      a 
   uacuccuuccguuucacaauguaagucauu uagcauuuuuca auucauauuga guuaaugaaucu    agauau u
   |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||    ||||||  
   augagggagguaaaguguuacauucagUAA AUUGUAAAGAGU UAAGUauaacu caauuacuuaga    ucugua a
aca                              G            G           a            ----      u 

>osa-MIR809b (-77.20)   [osa-miR809b:97-118]

u   ucuaaa         --         a                   c                 -ua  g   c 
 ugu      uacuuccuu  uuucacaau uaagucauucuagcauuuc cacauucauauugaugu   au aau u
 |||      |||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||   || |||  
 acg      augagggag  aaaguguua auucagUAAGAUUGUAAAG GUGUAAGUauaacuaca   ua uua a
a   ---uug         gc         c                   A                 uug  g   g 

>osa-MIR809c (-69.60)   [osa-miR809c:106-127]

     c               a                a  c         a  a  a         cuag     ua 
auacu ccuccauuucacaau uaagucauucuagcau uc uauauucau uu au uuaaugaau    auaua  u
||||| ||||||||||||||| |||||||||||||||| || ||||||||| || || |||||||||    |||||   
uauga ggagguaaaguguua auucagUAAGAUUGUA AG GUGUAAGUa aa ua aauuacuua    uauau  a
     a               c                A  A         -  c  c         --aa     uu 

>osa-MIR809d (-111.00)   [osa-miR809d:114-135]

u    agg    c                                   c                              ca   u 
 uuac   uacu ccuccguuucacaauguaagucauucuagcauuuc cacauucauauugauguuaaugaaucuaga  uag u
 ||||   |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||  
 aaug   auga ggaggcaaaguguuacauucagUAAGAUUGUAAAG GUGUAAGUauaacuacaauuacuuagaucu  auc a
a    ---    a                                   A                              --   u 

>osa-MIR809e (-92.30)   [osa-miR809e:113-134]

    c c                                 c            a                    c   aa 
uacu c uccguuucacaauguaaguuauucuaacauuuc uacauuuauauu auguuaaugaaucuagacau auu  c
|||| | ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||   
auga g aggcaaaguguuacauucaaUAAGAUUGUAAAG GUGUAAGUauaa uacaauuauuuagaucugua uaa  a
    a u                                 A            c                    -   cu 

>osa-MIR809f (-86.50)   [osa-miR809f:106-127]

    c                            u                   a   u        c    cauau 
uacu ccuccguuucacaauuuaagucauucua cauuucucacauucauauu aug uaaugaau uaga     a
|||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||||      
auga ggaggcaaaguguuaaauuuagUAAGAU GUAAAGAGUGUAAGUauaa uac auuacuua aucu     u
    a                            U                   c   c        a    aucua 

>osa-MIR809g (-101.30)   [osa-miR809g:105-126]

                                       c                         ----       a 
acuuccuccguuucacaauguaagucauuuuagcauuuc cauauucauauugaugcuaaugaau    auauaua a
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    |||||||  
ugagggaggcaaaguguuacauucagUAAGAUUGUAAAG GUGUAAGUauaacuacgauuacuua    uguauau u
                                       A                         gauc       a 

>osa-MIR809h (-74.90)   [osa-miR809h:96-117]

                c             c               g              cauau 
guuucacaauguaagu auucuaacauuuc cacauucauauugau uuaaugaaucuaga     a
|||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||      
caaaguguuacauuca UAAGAUUGUAAAG GUGUAAGUauaacua aauuacuuagauuu     u
                a             A               a              aucua 

>osa-MIR810a (-168.80)   [osa-miR810a:21-41]

aauauuc   a      c    A     C                        aaua                             c                             -   u 
       acu ugguug caUC UAAGC CACCACAUGUGGcucgcaugcuua    acuaacggcauaauuagaucacuugauga gacguauaucgguguucgcuauauauacu auc a
       ||| |||||| |||| ||||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||  
       uga accagc guag auucg gugguguacaccgagcguacgaau    ugauugccguauuaauuuagugaacuacu cugcguauagccacaagcgauauauauga ugg c
--uuguu   c      a    c     a                        ----                             a                             a   u 

>osa-MIR811a (-125.60)   [osa-miR811a:16-39]

         a      C    A                                     c                   g   -----a    -  c 
ggaaacuug aaacuA CGUU GAUCGAGAAAUGGACGUccgagauucguucacgucau augaguuaaaauuuaacuc cag      uuca cu a
||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||      |||| ||  
ccuuugaac uuugau gcaa cuagcucuuuaccugcaggcucuaagcaggugcagug uacucaauuuuaaauugag guc      aagu ga u
         c      u    c                                     u                   g   auuuua    u  g 

>osa-MIR811b (-128.10)   [osa-miR811b:16-39]

         a           A    G            c                                       g   ----------     c 
ggaaacuug aaacuACCGUU GAUC AGAAAUGGACGU cgagauucguccacgucaccaugaguuaaaauuuaacuc cag          auuca u
||||||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||          |||||  
ccuuugaac uuugauggcaa cuag ucuuugcuugca gcucuaagcgggugcagugguacucaauuuuaaauugag guc          ugagu c
         c           c    g            a                                       g   auuuucaaau     c 

>osa-MIR811c (-111.00)   [osa-miR811c:1-24]

      A                                      a                  u   -uaa    uaa 
ACCGUU GAUCGAGAAAUGGACGUucgagauucguccacgucacc ugaguuaaaauuuaacuc cag    auuu   c
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    ||||    
uggcaa cuagcucuuuaucugcaggcucuaagcaggugcagugg acucaauuuuaaauugag guc    ugag   u
      c                                      g                  c   uaag    uac 

>osa-MIR812a (-94.62)   [osa-miR812a:175-196]

        cc                uuacacu    auc     a                          uuu       uuacu       ---uu    -      g      c  g 
accuccgu  caaaauaagugcaguu       auuc   uccaa guuugaucguucgucuuauuugaaaa   uuuauga     auuuuua     guua uuacau auaaaa au a
||||||||  ||||||||||||||||       ||||   ||||| ||||||||||||||||||||||||||   |||||||     |||||||     |||| |||||| |||||| || a
uggaggca  guuuuauucacgucgg       uagg   AGGUU CAAAUUGGCAGGCAGaauaaacuuuu   aaauacu     uaaaaau     uaau agugug uauuuu ug u
        aa                -cacuuu    caC     G                          --u       ---uu       uuuuu    c      -      a  a 

>osa-MIR812b (-58.54)   [osa-miR812b:141-162]

    c   a    -                               --    aaagauuaaaaaaauagucacgcauaaaguaaua 
guau cgu ucua cguuugaccguucgucuuauuugaaaauuuu  auga                                  u
|||| ||| |||| |||||||||||||||||||||||||||||||  ||||                                  u
caua gca AGGU GCAAAUUGGCAGGCAGaauaaacuuuuaaaa  uacu                                  c
    a   C    U                               au    aaucauaaaaauaacaauaaucuacuauuuugua 

>osa-MIR812c (-55.50)   [osa-miR812c:134-155]

        c                   a      u   aaaaaauuaaaaacauaagucaugcauaaaauauuauucaug 
gguuuccg gucuaauguuugaccgucc ucuuau uga                                          u
|||||||| ||||||||||||||||||| |||||| |||                                           
ccaaaggc CAGGUUGCAAAUUGGCAGG AGaaua auu                                          u
        a                   C      u   aaaaaaaaauacuaaccacaauaauaauaacaauuuacuauu 

>osa-MIR812d (-30.94)   [osa-miR812d:129-150]

   a      a       a    c      cgaaaaa     aaaaaaaaacaagucacgcauaaaguauuauuc 
cgu uccaac uuugauc ucug cuuauu       uuuau                                 a
||| |||||| ||||||| |||| ||||||       |||||                                 u
gca AGGUUG AAAUUGG AGGC Gaauaa       aaaua                                 g
   C      C       C    A      augaaaa     cuaaucauaaaaauaacaagaauauacuauuuu 

>osa-MIR812e (-59.90)   [osa-miR812e:141-162]

     a   c     -                             uuuauuacuauuuuuauuguuauuagaugauaaaauaua 
guuuu gug ccaac uuugaccguccgucuuauuugaaaauuuu                                       a
||||| ||| ||||| |||||||||||||||||||||||||||||                                       a
caaag caC GGUUG AAAUUGGCAGGCAGaauaaauuuuuaaaa                                       u
     g   A     C                             uacuuuaaaaaaauuuuuaauucagugcguacuucauua 

>osa-MIR813 (-119.80)   [osa-miR813:167-188]

             c  ac      a                          a               u                 ------   c   - a  u 
uaaacguagauua ug  aaaacc auuccauaaccccuaggcuauuuugc agacgaaucuaauga guauauuaauccaugau      uag gac c au a
||||||||||||| ||  |||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||      ||| ||| | ||  
auuuguaucuaau aC  UUUUGG UAAGGUAUUGGGgauccgauaaaacg ucugcuuagauuacu cauauaauuagguacua      auc cug g ug c
             c  CA      G                          c               c                 aauaau   a   c a  u 

>osa-MIR814a (-66.50)   [osa-miR814a:19-40]

  c   u      cga                              u 
ac uag accgga   gaCACUUCAUAGUACAACGAAUCUggacag a
|| ||| ||||||   |||||||||||||||||||||||||||||| a
ug auc uggccu   cugugaaguaucauguugcuuagaccuguc g
  a   c      aua                              c 

>osa-MIR814b (-52.70)   [osa-miR814b:12-33]

                C                gga 
accggacgagaCACUU AUAGUACAACGAAUCU   c
|||||||||||||||| ||||||||||||||||    
uggucugcucugugaa uaucauguugcuuaga   a
                a                agu 

>osa-MIR814c (-44.30)   [osa-miR814c:12-33]

   ag   u       C      C              - g 
acc  aug gaCACUU AUAGUA AACGAAUCUggaca g a
|||  ||| ||||||| |||||| |||||||||||||| |  
ugg  uau cugugaa uaucau uugcuuaggccugu c a
   cu   c       a      a              a g 

>osa-MIR815a (-24.40)   [osa-miR815a:59-79]

         a   -     uu        -a     a   c 
uuuuuuuag cuc uuaau  cuuuuucu  ggaug acu u
||||||||| ||| |||||  ||||||||  ||||| ||| u
agagGGGUU GAG AGUUA  GGAAgagg  uuugu ugg a
         A   G     GG        ag     g   g 

>osa-MIR815b (-86.80)   [osa-miR815b:81-101]

                          a              u  uu       cuc      ag c 
cuaaugguucaccucguuuugcguau uucccaaucuucuc au  ccuucuc   aaacac  c u
|||||||||||||||||||||||||| |||||||||||||| ||  |||||||   ||||||  |  
gauuaccgaguggagcaaaaugcaua aaGGGUUAGAGGAG UA  GGAAgag   uuugug  g g
                          g              U  GG       ---      -a g 

>osa-MIR815c (-38.70)   [osa-miR815c:80-100]

      -c       --      c a      cauuuagccggcuuauagcc 
cuucuc  ucucuuc  ucuccu c ccucag                    u
||||||  |||||||  |||||| | ||||||                     
gaaGGG  AGAGGAG  AGGGGA g ggaguu                    a
      UU       UU      A a      ugugugggaaucuccuucau 

>osa-MIR816 (-30.70)   [osa-miR816:3-22]

               C   A      c        a a 
auGUGACAUAUUUUA UAC ACgaau uggauaug c g
||||||||||||||| ||| |||||| |||||||| |  
uacacuguguaggau aug ugcuua auuuguau g a
               u   a      a        - g 

>osa-MIR817 (-67.90)   [osa-miR817:59-79]

          a             u              a 
uaucucaauc ggccucaaguugg guccgucauggaug u
|||||||||| ||||||||||||| |||||||||||||| g
auagAGUUAG CCGGAGUUCAACC cgggcagugccuac g
          C             U              u 

>osa-MIR818a (-85.10)   [osa-miR818a:117-138]

     -  a                    -   aau            c    u         c      aa 
ucccu cc ucccauaguauaagggauuu ggg   gaugugacauau cuag auaaugaau uggaca  c
||||| || |||||||||||||||||||| |||   |||||||||||| |||| ||||||||| ||||||  c
aggga GG AGGGUAUUAUAUUCCCUAAa cuc   cuacacugugua gauc uguuacuua accugu  g
     a  C                    a   -au            u    c         a      cu 

>osa-MIR818b (-64.90)   [osa-miR818b:89-110]

                    a      a             c  cuc      au 
ccuccgucccauaauauaag gauuuu gauggaugugaua au   aguaca  g
|||||||||||||||||||| |||||| ||||||||||||| ||   ||||||  a
ggaGGCAGGGUAUUAUAUUC CUAAaa cuaccuauacuau ua   ucaugu  a
                    C      c             a  aua      cu 

>osa-MIR818c (-94.99)   [osa-miR818c:142-163]

        c     u                        a             auccuagcuauaaccauauaucuagacauagcua 
auaauaua ucauu cguccuauaauauaagggauuuug agggaugugacac                                  g
|||||||| ||||| |||||||||||||||||||||||| |||||||||||||                                  g
uauuguau aguaG GCAGGGUAUUAUAUUCCCUAAaac ucucuauauugug                                  a
        a     -                        c             uauauagaucuguucucguacagaucuauauaca 

>osa-MIR818d (-80.40)   [osa-miR818d:98-119]

u     uu     u          a                          g       cuaga    u 
 uccua  aauug uacucucucc ucccauaauauaagggauuuuagagg augugau     uucg a
 |||||  ||||| |||||||||| |||||||||||||||||||||||||| |||||||     |||| g
 aggau  uugau augagggaGG AGGGUAUUAUAUUCCCUAAaaucucc uacacua     gagc u
a     --     c          C                          a       caaag    c 

>osa-MIR818e (-92.01)   [osa-miR818e:201-222]

  -                                 c   cac               c         uuuuuuuuggaauuauuauuauuuuugacuuauuuuauuaucca 
cc ccguccuauaauauaagggauuuugaguuuuug uug   uguuugaccacucgu uuauuuaaa                                            a
|| ||||||||||||||||||||||||||||||||| |||   ||||||||||||||| |||||||||                                             
gg GGCAGGGUAUUAUAUUCCCUAAaauucaaaaac aac   acaaacuggugagca aauaaguuu                                            a
  a                                 a   aua               a         uuuaaacauguuuauauuuuuugcuuuucaauacgaauuucaug 

>osa-MIR819a (-91.10)   [osa-miR819a:9-30]

           G                                           -   aau 
ccuccguuUCA GUUAUAAGACUUUCUAGCauugcccacauucauauagauguua aug   c
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
ggaggcaaagu uaauauucugaaagaucguaacggguguaaguauaucuacaau uac   u
           a                                           a   gga 

>osa-MIR819b (-104.30)   [osa-miR819b:20-41]

          a           G                      c c           g  a                  c 
guaagcuacu ccuccguuUCA GUUAUAAGACUUUCUAGCauua c acauucauaua au uuaaugaaucuagacaua a
|||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||  
cauucgauga ggaggcaaagu uaauauucugaaagaucguaau g uguaaguauau ua aauuacuuagaucuguau u
          a           a                      a u           a  c                  a 

>osa-MIR819c (-104.90)   [osa-miR819c:14-35]

    a           G        A                           g                   cac 
uacu ccuccguuUCA GUUAUAAG CUUUCUAGCauugcccacauucauaua auguuaaugaaucuaggca   a
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
auga ggaggcaaagu uaauauuc gaaagaucguaacggguguaaguauau uacaauuacuuagaucugu   u
    a           a        c                           a                   aua 

>osa-MIR819d (-127.40)   [osa-miR819d:15-36]

     a                                                                    a 
cuacu ccuccguuUCAGGUUAUAAGACUUUCUAGCauugcccacauucauauagauguuaaugaaucuagaca g
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
gauga ggaggcaaaguccaauauucugaaagaucguaacggguguaaguauaucuacaauuacuuagaucugu u
     a                                                                    g 

>osa-MIR819e (-109.90)   [osa-miR819e:14-35]

    a           G                                    g                   cac 
uacu ccuccguuUCA GUUAUAAGACUUUCUAGCauugcccacauucauaua auguuaaugaaucuaggca   a
|||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
auga ggaggcaaagu uaauauucugaaagaucguaacggguguaaguauau uacgauuacuuagaucugu   u
    a           a                                    a                   aua 

>osa-MIR819f (-83.70)   [osa-miR819f:9-30]

           G         C            c   c             u               cau 
ccuccguuUCA GUUAUAAGA UUUCUAGCauug cca auucauauauaug uaaugaaucuaggca   a
||||||||||| ||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||    
ggaggcaaagu uaauauuuu aaagaucguaac ggu uagguauauauac auuacuuagaucugu   u
           a         a            a   a             u               aca 

>osa-MIR819g (-92.80)   [osa-miR819g:11-32]

   a         G                                  gag               ag  cac 
ucc uccguuUCA GUUAUAAGACUUUCUAGCauugcccacauucaua   auguuaaugaaucua  ca   a
||| ||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||||  ||    
agg aggcaaagu uaauauucugaaagauuguaauggguguaaguau   uacaauuacuuagau  gu   u
   -         a                                  aua               cu  aua 

>osa-MIR819h (-100.10)   [osa-miR819h:15-36]

      u                          A C    c                       c         cac 
uacuac cuccguuUCAGGUUAUAAGACUUUCU G auug ccacauucauauauauguuaaug aucuaggca   a
|||||| |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |||||||||    
augaug gaggcaaaguccaauauucugaaaga c uaac gguguaaguauauauacaauuac uagaucugu   u
      -                          g a    a                       u         aua 

>osa-MIR819i (-94.33)   [osa-miR819i:40-61]

     ---      ucauugccacucau     a           G         C               ac            a                cau 
ccaug   uaaaua              uuacu ccuccguuUCA GUUAUAAGA UUUCUAGCauugucu  auucguauagau uuaaugaaucuagaca   a
|||||   ||||||              ||||| ||||||||||| ||||||||| |||||||||||||||  |||||||||||| ||||||||||||||||    
gguac   auuuau              aauga ggaggcaaagu uaauauucu aaagaucguaacggg  uaaguauaucua aauuacuuagauuugu   u
     ugu      -----------uau     a           a         a               ca            c                aua 

>osa-MIR819j (-107.10)   [osa-miR819j:26-47]

      cuuuu     a           G                                    g                   cac 
guuaaa     auacu ccuccguuUCA GUUAUAAGACUUUCUAGCauugccuacauucauaua auguuaaugaaucuaggca   a
||||||     ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
uaauuu     uauga ggaggcaaagu uaauauuuugaaagaucguaacggguguaaguauau uacaauuacuuagaucugu   u
      ---au     a           a                                    a                   aua 

>osa-MIR819k (-102.10)   [osa-miR819k:15-36]

     a           G                      c             g              u      c 
guacu ccuccguuUCA GUUAUAAGACUUUCUAGCauug ccauauucauaua auguuaaugaaucu gacaca a
||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||  
cauga ggaggcaaagu uaauauucugaaagaucguaac gguguaaguauau uauaauuacuuaga cugugu u
     a           a                      a             a              u      a 

>osa-MIR820a (-118.80)   [osa-miR820a:5-25]

u c    G    G          A     -  a  a           u    u   a     au            cg     a  gu      a 
 g gUCG CCUC UGGAUGGACC Ggagc uc ac uuccuuaaggu guuc uuc aaccc  acaagguuccac  ccugc uu  uccaag g
 | |||| |||| |||||||||| ||||| || || ||||||||||| |||| ||| |||||  ||||||||||||  ||||| ||  |||||| u
 c cagc ggag accugccugg ccucg ag ug aaggaauuccg caag aag uuggg  uguuccaaggug  ggaug aa  agguuc g
a u    a    g          a     u  c  -           u    c   g     au            aa     a  gu      u 

>osa-MIR820b (-136.70)   [osa-miR820b:10-30]

guaca       G               AG    -     g           c    u        cau            cg     -a    u     a 
     ugcgUCG CCUCGUGGAUGGACC  gagc ucgac uuccuuaaggc guuc uuccgacc   acaagguuccgu  ccugc  uugu ccaag g
     ||||||| |||||||||||||||  |||| ||||| ||||||||||| |||| ||||||||   ||||||||||||  |||||  |||| ||||| u
     acgcagc ggagcaccugccugg  uucg agcug aaggaauuccg caag aaggcugg   uguuccaaggug  ggacg  agca gguuc g
gaucg       a               au    u     -           u    c        aau            aa     aa    -     u 

>osa-MIR820c (-143.00)   [osa-miR820c:5-25]

u      G               A     -     a           c    u        cau             g     -a    u     a 
 gcgUCG CCUCGUGGAUGGACC Ggagc ucgac uuccuuaaggu guuc uuccgacc   acaagguuccgcu ccugc  uugu ccaag g
 |||||| ||||||||||||||| ||||| ||||| ||||||||||| |||| ||||||||   ||||||||||||| |||||  |||| ||||| u
 cgcagc ggagcaccugccugg ccucg agcug aaggaauuccg caag aaggcugg   uguuccaagguga ggacg  aaca gguuc g
a      a               a     u     -           u    c        aau             a     aa    -     u 

>osa-MIR821a (-126.69)   [osa-miR821a:15-38]

   a    c                  A                          a            gg c          ac   a     a      c            a  g      cucuuauc     u 
gau ucag ugaaaAAGUCAUCAACAA AAAGUUGAAUaacucaucaagaucua aacuuuuauuuu  u auuucuucau  gac aagug uaguaa auuguucacaga uu acauau        ugguu u
||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  | ||||||||||  ||| ||||| |||||| |||||||||||| || ||||||        ||||| a
cua aguu acuuuuucaguaguuguu uuucaacuuauugaguaguucuagau uugaaaauaaaa  a uaaagaagua  cug uuuac aucauu uaauaaguguuu aa uguaua        aucaa u
   a    a                  g                          a            aa -          ga   c     a      a            a  a      uacacaau     a 

>osa-MIR821b (-130.00)   [osa-miR821b:21-44]

         u                       A               a                     uuu             c       a  uua           cacaaauuuuacauauauguguuaaaguuu 
cuaaaugau ucaauugaaaAAGUCAUCAACAA AAAGUUGAAUaacuu ucaagaucuaaaacuuuuauu   guuauuucuucau cgacgaa ug   guaauauuauu                              a
||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   ||||||||||||| ||||||| ||   |||||||||||                              u
gauuuacua aguugacuuuuucaguaguuguu uuucaacuuauugag aguucuagauuuugaaaauaa   caauaaagaagua gcuguuu ac   cauuguaauaa                              a
         u                       g               a                     cac             u       c  uac           auauuuuaacaguauagagaauagaccaaa 

>osa-MIR821c (-122.07)   [osa-miR821c:11-34]

    c                  A                    c                  g   a         ac         a   u  c            a  g     acucuuauc     u 
ucaa ugaaaAAGUCAUCAACAA AAAGUUGAAUaacucaucaa aucuaaaacuuuuauuuu guu uuucuucau  gacaaagug uag aa auuauucacaaa uu acaua         ugguu u
|||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| |||||||||  ||||||||| ||| || |||||||||||| || |||||         ||||| a
aguu acuuuuucaguaguuguu uuucaacuuauugaguaguu uagauuuugaaaauaaaa caa aaagaagua  cuguuuuac auc uu uaauaaguguuu aa uguau         aucaa u
    a                  g                    c                  a   c         ga         a   -  u            a  a     auacacaau     a 

>mdo-mir-1 (-37.14)   [mdo-miR-1:53-73]

-       c                     ac     ugaaca 
 accuacu agaguacauacuucuuuaugu  ccaua      u
 ||||||| |||||||||||||||||||||  |||||       
 uggaugg uuuuAUGUAUGAAGAAAUGUA  GGUau      a
g       u                     -A     cguaac 

>mdo-mir-7 (-22.80)   [mdo-miR-7:17-38]

uuggccuaguucugugU  A     A       U      --     a 
                 GG AGACU GUGAUUU GUUGuu  uuuag u
                 || ||||| ||||||| ||||||  |||||  
                 cc ucuga cacuaaa caacag  aaauc a
-----------------  g     -       -      ca     a 

>mdo-mir-9-2 (-40.10)   [mdo-miR-9:16-38] [mdo-miR-9*:54-74]

g    u     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aaU  AAGCCAAUAGAUCGA AUacuu  g u
a    -     a   GA               A      cu g 

>mdo-mir-9-1 (-38.20)   [mdo-miR-9:16-38] [mdo-miR-9*:56-76]

c    cc       -  C               G     gu   a 
 gagg  cguuucu cU UUUGGUUAUCUAGCU UAUGA  guu u
 ||||  ||||||| || ||||||||||||||| |||||  |||  
 cuuu  guaaaga GA AAGCCAAUAGAUCGA AUacu  cga u
a    ca       U  -               A     au   g 

>mdo-mir-10a (-32.29)   [mdo-miR-10a:15-37]

-c    uu        A    G     C          uaaggaa 
  uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
  ||||  |||||||| |||| ||||| ||||||||||        
  acag  gauguaua gggg aucua gcuuaaacac       u
au    uu        a    -     u          ugguguu 

>mdo-mir-10b (-40.20)   [mdo-miR-10b:26-48]

ca   u   a  a     u        A    G     C          ---ug  a 
  gaa guu uu cguug cuauauAU CCCU UAGAA CGAAUUUGUg     gu u
  ||| ||| || ||||| |||||||| |||| ||||| ||||||||||     ||  
  cuu caa aa guagc gguauaua gggg aucuu gcuuagacac     ca u
ca   -   a  c     u        a    -     a          ugaua  u 

>mdo-mir-21 (-39.40)   [mdo-miR-21:8-29]

--                A     A     A    ugg 
  ugucggaUAGCUUAUC GACUG UGUUG cugu   a
  |||||||||||||||| ||||| ||||| ||||    
  acagucugucgaguag cugac acaac ggua   u
uu                -     g     -    cuc 

>mdo-mir-22 (-42.80)   [mdo-miR-22:51-72]

cc    ca              -    g       u u  ug 
  gagc  cagcaguucuucag uggc agcuuua g cu  u
  ||||  |||||||||||||| |||| ||||||| | ||   
  cucg  guCGUCAAGAAGUU ACCG UCGAAau c ga  c
gu    -a              G    -       - -  cc 

>mdo-mir-30a (-42.60)   [mdo-miR-30a:6-27]

                UC           g gaagc 
gcggcUGUAAACAUCC  GACUGGAAGcu u     a
||||||||||||||||  ||||||||||| |      
cgucgacguuuguagg  cugacuuucgg g     g
                --           g uagac 

>mdo-mir-31 (-41.70)   [mdo-miR-31:10-33]

a    --------     GA     G             -U   gaa 
 gcug        gagaG  GGCAA AUGUUGGCAUAGC  Guu   c
 ||||        |||||  ||||| |||||||||||||  |||    
 cgac        cuuuc  ccguu uacaaccguaucg  caa   u
a    uaucuguu     ua     a             uc   gag 

>mdo-mir-32 (-30.90)   [mdo-miR-32:6-26]

g       UG     U            -guu  c 
 gagaUAU  CACAU ACUAAGUUGCau    gu a
 |||||||  ||||| ||||||||||||    ||  
 uuuuaua  gugua ugauuuaacgug    cg c
-       gu     -            auuu  g 

>mdo-mir-34a (-49.87)   [mdo-miR-34a:22-44]

-    -   --    -  ug     uU        -   A          gugaguaa 
 ggcc agc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUU        u
 |||| |||  |||| ||  |||||  |||||||| ||| ||||||||||         
 ccgg uug  gcac uc  gaaga  ccgucaua gaa cgacuaacga        a
c    a   uu    g  gu     uc        u   -          aggaauag 

>mdo-mir-100 (-30.80)   [mdo-miR-100:13-33]

    -uu c    A   CG    UC   A      g  au 
ccug   g caca ACC  UAGA  CGA CUUGUg ug  a
||||   | |||| |||  ||||  ||| |||||| ||   
ggac   c gugu ugg  aucu  guu gaacac ac  u
    ugu u    a   au    gu   c      -  cu 

>mdo-mir-101-2 (-31.40)   [mdo-miR-101:49-70]

  ug  c                    c a    guaua 
ac  uc uuuuucgguuaucaugguac g ugcu     u
||  || |||||||||||||||||||| | ||||      
ug  gg aaGAAGUCAAUAGUGUCAUG C AUgg     g
  gu  u                    A -    aaagu 

>mdo-mir-101-1 (-47.30)   [mdo-miR-101:51-72]

a       cuggc                  a    guccg 
 ggcugcc     ucaguuaucacagugcug ugcu     u
 |||||||     |||||||||||||||||| ||||      
 ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
a       uagGA                  -    aacuc 

>mdo-mir-103-1 (-33.00)   [mdo-miR-103:46-68]

--u       --    u  u           c   u g a 
   ugucuuc  ggcu cu uacagugcugc uug u c u
   |||||||  |||| || ||||||||||| ||| | |  
   acagaAG  UCGG GA AUGUUACGACG Aac a g a
guu       UA    -  C           -   u g u 

>mdo-mir-103-2 (-37.30)   [mdo-miR-103:50-72]

--      g      --   u  u           c   uu   u 
  cuuggu cuuuca  gcu cu uacagugcugc uug  gca u
  |||||| ||||||  ||| || ||||||||||| |||  |||  
  gaacca gaaAGU  CGG GA AUGUUACGACG Aac  ugu g
ua      a      AU   -  C           -   --   a 

>mdo-mir-107 (-28.70)   [mdo-miR-107:53-75]

cu   uuc      --c    u  c           c   u   g 
  ucu   ugcuuu   ggcu cu uacaguguugc uug ggc u
  |||   ||||||   |||| || ||||||||||| ||| ||| g
  aga   acgaaA   UCGG GA AUGUUACGACG Aac uug g
--   --u      CUA    -  C           -   -   a 

>mdo-mir-122 (-36.30)   [mdo-miR-122:9-33]

-   -      GG       C           UGUcc 
 cag agcuaU  AGUGUGA AAUGGUGUUUG     a
 ||| ||||||  ||||||| |||||||||||      
 guc ucgaua  ucacacu uuaccgcaaac     g
u   a      aa       a           uaucu 

>mdo-mir-124a-1 (-35.92)   [mdo-miR-124a:52-73]

a      uc   cc        a   ga        uaaau 
 ggccuc  ucu  guguucac gcg  ccuugauu     g
 ||||||  |||  |||||||| |||  ||||||||     u
 ucgggg  aga  CGUAAGUG CGC  GGAAUUaa     c
g      ua   AC        G   AC        cauac 

>mdo-mir-124a-2 (-40.20)   [mdo-miR-124a:56-77]

-a    a a     u    cc        a   ga        uaau 
  ucag g cucug cucu  guguucac gcg  ccuugauu    g
  |||| | ||||| ||||  |||||||| |||  ||||||||    u
  aguc c gaggc gaga  CGUAAGUG CGC  GGAAUUaa    c
aa    - -     -    AC        G   AC        caua 

>mdo-mir-124a-3 (-25.80)   [mdo-miR-124a:43-64]

    - c        a   ga        uaaug 
cucu g guguucac gcg  ccuugauu     u
|||| | |||||||| |||  ||||||||      
gaga C CGUAAGUG CGC  GGAAUUaa     c
    A -        G   AC        cauau 

>mdo-mir-125b-1 (-34.80)   [mdo-miR-125b:12-33]

a   uu     UC  UG   C   A       ----Ag   u 
 cuu  ccuag  CC  AGA CCU ACUUGUG      gcu u
 |||  |||||  ||  ||| ||| |||||||      |||  
 gag  ggauc  gg  ucu gga uggacac      cga u
g   gc     ca  gu   c   c       caacag   c 

>mdo-mir-125b-2 (-26.10)   [mdo-miR-125b:3-24]

aa    U    C           Au     c 
  UCCC GAGA CCUAACUUGUG  guuua c
  |||| |||| |||||||||||  ||||| g
  aggg uucu ggauugggcac  uaaau u
cg    -    c           -c     u 

>mdo-mir-128 (-41.30)   [mdo-miR-128:52-72]

ugu        a          uua      ca    g gag 
   gcagcagg aggggggccg   cacugu  gaga u   u
   |||||||| ||||||||||   ||||||  |||| |    
   ugucgucc UUUCUCUGGC   GUGACA  CUcu g   a
cgg        c          CAA      --    g acg 

>mdo-mir-129 (-29.80)   [mdo-miR-129:6-27]

     -       C   CU      G   -  c  ua 
uggau CUUUUUG GGU  GGGCUU CUg uu cu  a
||||| ||||||| |||  |||||| ||| || ||   
aucua gaaaaac cca  cccgaa gac ga ga  a
     u       c   uu      g   u  u  cu 

>mdo-mir-130a (-31.74)   [mdo-miR-130a:49-70]

u      a        c      ug  a   ucugca 
 ggccag gcucuuuu acauug  cu cug      c
 |||||| |||||||| ||||||  || |||       
 ucgguU CGGGAAAA UGUAAC  GA gau      c
g      A        A      GU  C   cacuau 

>mdo-mir-133a (-37.70)   [mdo-miR-133a:53-74]

-      uuu    a       aa  u  a        accua 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

>mdo-mir-135a (-36.70)   [mdo-miR-135a:23-45]

a    aa     ucua    c           U            u g a 
 gaua  uucac    gugu uUAUGGCUUUU AUUCCUAUGUGA a u a
 ||||  |||||    |||| ||||||||||| |||||||||||| | | u
 cugu  aagug    caua aguaccgaagg uagggauguacu u a a
a    -a     -uua    a           -            c g a 

>mdo-mir-135b (-51.40)   [mdo-miR-135b:18-39]

---a       ----g                  CAU          -   cu 
    gcucucu     cuguggccUAUGGCUUUU   UCCUAUGUGa uug  g
    |||||||     ||||||||||||||||||   |||||||||| |||  u
    cgagagg     gacaucggguaccgaaaa   gggauguacu aac  u
ccuc       ggagg                  -uc          c   cc 

>mdo-mir-137 (-11.40)   [mdo-miR-137:29-50]

-----------------      ug a     -  g 
                 cuuggg  g uaaua cg a
                 ||||||  | ||||| || u
                 GAAUUC  U AUugu gc u
ggagcuGAUGCGCAUAA      GU -     u  a 

>mdo-mir-138 (-29.65)   [mdo-miR-138:9-25]

- u   u  AG       U     UCa     acaagcagcu 
 g ugc gc  CUGGUGU GUGAA   ggccg          c
 | ||| ||  ||||||| |||||   |||||           
 c acg ug  gaccaca cacuu   ucggc          a
a u   u  -g       u     -ua     ccauuauccu 

>mdo-mir-142 (-33.80)   [mdo-miR-142:46-68]

g  g   c           a         ---ua   g 
 ca uca ccauaaaguag aagcacuac     aca c
 || ||| ||||||||||| |||||||||     |||  
 gu agu GGUAUUUCAUC UUUGUGAUG     ugu a
-  g   A           C         Uggga   a 

>mdo-mir-143 (-38.80)   [mdo-miR-143:40-61]

      g         g      u  -   g 
cccgag ugcagugcu caucuc gg uca u
|||||| ||||||||| |||||| || |||  
ggGCUC AUGUCACGA GUAGAG cu agu u
      G         A      U  g   g 

>mdo-mir-144 (-45.50)   [mdo-miR-144:52-73]

c  -     ag     g        g         -a    gc 
 gg ggccc  gccgg auaucauc uauacugua  guuu  a
 || |||||  ||||| |||||||| |||||||||  ||||   
 cc ccggg  cGGUC UGUAGUAG AUAUGACAU  caga  a
u  g     ag     A        -         ca    gu 

>mdo-mir-451 (-37.30)   [mdo-miR-451:10-31]

----cu      gA    G            U 
      ggcggg  AACC UUACCAUUACUG G
      ||||||  |||| ||||||||||||  
      ucgccc  uugg aaugguaaugau U
gucgcg      uc    g            U 

>mdo-mir-145 (-33.32)   [mdo-miR-145:7-29]

       UC    U  C            uagau 
cucaggG  CAGU UU CCAGGAAUCCCU     g
|||||||  |||| || ||||||||||||     c
gaguucu  guca aa gguccuuagggg     u
       -u    u  a            uagaa 

>mdo-mir-152 (-35.20)   [mdo-miR-152:47-68]

  c              g  a    cc    ua a  c 
cc ggcccagguucugu au cacu  gacu  g cu u
|| |||||||||||||| || ||||  ||||  | ||  
gg ucGGGUUCAAGACA UA GUGA  CUga  c ga g
  u              G  C    --    -- -  g 

>mdo-mir-182 (-21.04)   [mdo-miR-182:7-28]

gcugugU       U -G      UCA      ugagau 
       UUGGCAA G  UAGAAC   CAcugg      a
       ||||||| |  ||||||   ||||||       
       aaccguu c  aucuug   guggcc      a
----auc       - ag      ---      uaaggu 

>mdo-mir-184 (-36.36)   [mdo-miR-184:53-74]

c       auc         c      a c     uuucua 
 cagucac   cccuuauca uuuucc g ccagc      a
 |||||||   ||||||||| |||||| | |||||      u
 guuagug   GGGAAUAGU AAGAGG C GGUug      g
a       gaU         C      - A     uuaauc 

>mdo-mir-187 (-50.00)   [mdo-miR-187:51-70]

au    aga         a                a c  u 
  ugug   ccucuggcu caacacaggacacggg g uu u
  ||||   ||||||||| |||||||||||||||| | ||  
  acac   ggagaCCGA GUUGUGUUCUGUGCUc c ag c
--    -gg         C                c a  u 

>mdo-mir-181c (-36.40)   [mdo-miR-181c:7-29]

ug    AA         CU       A     --ag a 
  gggg  CAUUCAACG  GUCGGUG GUuug    c g
  ||||  |||||||||  ||||||| |||||    |  
  cccc  gugaguugc  cagcuac caaac    g c
-g    ag         --       -     ggaa u 

>mdo-mir-186 (-28.80)   [mdo-miR-186:7-29]

acc             U     U     Uuu   u 
   uucCAAAGAAUUC CCUUU GGGCU   gau c
   ||||||||||||| ||||| |||||   ||| u
   aggguuuuuuaag ggaaa cccga   uua u
---             u     -     -cu   a 

>mdo-mir-193 (-38.50)   [mdo-miR-193:41-61]

          u          g  a    ggu 
gaggauuggg cuuugugggc ag ugag   g
|||||||||| |||||||||| || ||||    
cucuuGACCC GAAACAUCCG UC Acuu   u
          U          G  A    gac 

>mdo-mir-196b (-34.60)   [mdo-miR-196b:16-36]

-      ucu     uU       U  C           cucc 
 aacugg   gugau  AGGUAGU UC UGUUGUUGGgg    a
 ||||||   |||||  ||||||| || |||||||||||    c
 uugacu   cauua  uccguca ag acgacagcucu    c
g      --u     cu       u  c           cuuu 

>mdo-mir-199b (-37.00)   [mdo-miR-199b:15-37]

-c    cu  -     C       U       U    U   gacu 
  ucca  cc gucua CCAGUGU UAGACUA CUGU Cag    c
  ||||  || ||||| ||||||| ||||||| |||| |||     
  gggu  gg cggau gguuaca gucugau gaca guu    c
uc    cg  u     u       c       -    u   auaa 

>mdo-mir-203 (-33.20)   [mdo-miR-203:53-74]

agcug   u    c         u    g    a    -   g 
     ccc gguc agugguucu aaca uuca cagu ucu u
     ||| |||| ||||||||| |||| |||| |||| |||  
     ggg cuaG UCACCAGGA UUGU AAGU Guua aga g
-----   u    U         U    A    -    g   u 

>mdo-mir-204 (-36.90)   [mdo-miR-204:25-46]

caacu   uaugu   cug     U         CA    A     g aaa 
     gac     gac   ugggc UCCCUUUGU  UCCU UGCCU g   u
     |||     |||   ||||| |||||||||  |||| ||||| |   c
     cug     cug   acucg agggaaacg  aggg acggg u   a
--cuu   -----   ucg     u         ac    -     g gag 

>mdo-mir-206 (-27.12)   [mdo-miR-206:45-65]

------     a                cc     ugaau 
      gaggc acaugcuucuuuauau  ccaua     u
      ||||| ||||||||||||||||  |||||     a
      cuuug UGUGUGAAGGAAUGUA  GGUau     u
gaaggg     G                -A     cgucg 

>mdo-mir-208 (-25.70)   [mdo-miR-208:50-71]

uuccugu   ag          g uc  gg      - uga 
       gac  gugagcuuuu g  cg  uuauac c   u
       |||  |||||||||| |  ||  |||||| |    
       cug  UGCUCGAAAA C  GC  AAUAug g   g
------g   gu          A GA  AG      u uac 

>mdo-mir-214 (-67.62)   [mdo-miR-214:71-91]

gggcu      acgga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     u
----u      -----           u          CAC            cacuc 

>mdo-mir-216 (-37.80)   [mdo-miR-216:19-39]

--gaug   g  aa     u         CU   A        -au   a 
      gcu ug  uuggc UAAUCUCAG  GGC ACUGUGag   guu a
      ||| ||  ||||| |||||||||  ||| ||||||||   |||  
      cga ac  aaucg auuaggguc  cug ugacacuc   uaa u
cuuuaa   g  -a     u         -u   g        ccu   a 

>mdo-mir-217 (-28.84)   [mdo-miR-217:14-37]

uu     c u  a  C     C          U  AUaaua 
  gaugu g ag UA UGCAU AGGAACUGAU GG      u
  ||||| | || || ||||| |||||||||| ||       
  cuacg c uc gu acgua uccuugacua cc      u
-u     a u  c  u     a          -  acggac 

>mdo-mir-218 (-38.05)   [mdo-miR-218:24-44]

---u  uuau  g   a   u      U         CU        gguugugag 
    ga    gu gcg gau uucugU GUGCUUGAU  AACCAUGU         g
    ||    || ||| ||| |||||| |||||||||  ||||||||          
    cu    cg cgc cug aaggua cacgaacug  uugguaca         u
acau  --uu  a   a   c      c         uc        aaaugagua 

>mdo-mir-219 (-47.20)   [mdo-miR-219:16-36]

ca       c     U   U     AA           ------    a 
  gggguuc gccgc GAU GUCCA  CGCAAUUCUug      ugcg g
  ||||||| ||||| ||| |||||  |||||||||||      ||||  
  ccucgag cggug cua caggu  guguuaagagc      acgu u
--       u     u   -     cg           caaccg    c 

>mdo-mir-223 (-42.70)   [mdo-miR-223:72-92]

ucuggcccagauccuuca     a    cc u                ---g   -       
                  gugcc cacu  g guauuugacaagcuga    uug gacacu 
                  ||||| ||||  | ||||||||||||||||    ||| ||||| c
                  uacgg guga  C CAUAAACUGUUUGACU    gau cugugc 
----------gauccguu     a    aC C                GUga   g       

>mdo-mir-338 (-42.80)   [mdo-miR-338:52-74]

----    u     cc      u   -         agugagcggc 
    ggcc uccuc  caacaa auc cugaugcug          a
    |||| |||||  |||||| ||| |||||||||           
    ucgg gggag  GUUGUU UAG GACUACGAC          c
accg    u     aA      U   U         CUcagaggua 

>mdo-mir-365 (-37.90)   [mdo-miR-365:55-76]

cc      aa        ac           ----   -    uu 
  gcaggg  aaugaggg  uuuugggggca    gau gugu  c
  ||||||  ||||||||  |||||||||||    ||| ||||  c
  cguucu  uUAUUCCU  AAAAUCCCCGU    cua caca  a
ga      cg        -A           AAUa   u    uu 

>mdo-mir-375 (-25.90)   [mdo-miR-375:38-60]

-  -     c     ccu  c     c  gac 
 cc cgcgc gagcc   cg acaaa cg   c
 || ||||| |||||   || ||||| ||    
 gg GUGCG CUCGG   GC UGUUU gc   u
c  A     -     CUU  U     U  gag 

>mdo-mir-383 (-30.50)   [mdo-miR-383:4-25]

----cucA      AA      U      -   g  a 
        GAUCAG  GGUGAU GUGGCU uuc gu g
        ||||||  |||||| |||||| ||| ||  
        cugguc  ucacua caccga aag ua a
gagaaaga      gg      -      c   g  c 

>mdo-mir-449 (-46.76)   [mdo-miR-449:11-32]

u ug             -    U          ugacua 
 g  augggaUGGCAGU GUAU GUUAGCUGGU      u
 |  ||||||||||||| |||| ||||||||||      c
 c  uacccuaucguca cgua caaucgaccg      u
a gu             a    -          ugcaag 

>mdo-let-7a-2 (-25.30)   [mdo-let-7a:5-26]

-   uU   G   U             uagaa ua a 
 agg  GAG UAG AGGUUGUAUAGUU     u  c u
 |||  ||| ||| |||||||||||||     |  | c
 ucc  uuc auc uccgacaugucaa     a  g a
u   -u   g   c             --uag gg a 

>mdo-let-7g (-38.80)   [mdo-let-7g:5-25]

a   U        A            ugagg    -a  a    a 
 ggc GAGGUAGU GUUUGUACAGUu     gucu  ug uacc c
 ||| |||||||| ||||||||||||     ||||  || ||||  
 ccg uuccguca cggacaugucaa     uaga  ac augg c
-   -        c            -----    gg  -    c 

>mdo-let-7i (-39.60)   [mdo-let-7i:6-26]

c    U                 U   --------  u     ugu 
 uggc GAGGUAGUAGUUUGUGC GUu        gg cgggu   g
 |||| ||||||||||||||||| |||        || |||||   a
 aucg uuccgucaucgaacgcg caa        uc gcccg   c
-    -                 u   uagaggug  -     uua 

>mdo-mir-15a (-31.34)   [mdo-miR-15a:14-35]

     ggguaaa UA        UA         Uggu   g 
ccuug       g  GCAGCACA  AUGGUUUGU    uuu a
|||||       |  ||||||||  |||||||||    |||  
ggaac       c  cgucgugu  uaccggacg    gga a
     auaaaaa uc        ua         ---u   a 

>mdo-mir-16 (-37.60)   [mdo-miR-16:14-35]

-      ag   c          -  A        CGuua    uuu 
 gucaac  ugc uUAGCAGCAC GU AAUAUUGG     agau   a
 ||||||  ||| |||||||||| || ||||||||     ||||   a
 cgguug  aug agucgucgug ca uuaugacc     ucua   a
c      ga   a          u  a        -----    uga 

>mdo-mir-183 (-37.94)   [mdo-miR-183:15-37]

-a   c        g      --AC     GA        ugaaaa 
  cuc uguucugu UAUGGC    UGGUA  AUUCACUG      c
  ||| |||||||| ||||||    |||||  ||||||||       
  gag acgagaca auaccg    accau  uaagugac      a
aa   -        a      ggaa     --        uaucac 

>mdo-mir-96 (-45.40)   [mdo-miR-96:19-41]

gau    -    gg     U         G     UU      -cu  cu 
   gucu gcuu  cccgu UUGGCACUA CACAU  UUGCUu   gu  c
   |||| ||||  ||||| ||||||||| |||||  ||||||   ||   
   uaga cgaa  gggua aaccgugau gugua  aacgag   cg  u
--g    a    aa     u         -     cu      ucu  uc 

>mdo-mir-212 (-42.70)   [mdo-miR-212:56-76]

    -  c   c   -ca  u     cu      c      ccc     
gggc ag gcg cgg   cc uggcu  agacug uuacug   gggc 
|||| || ||| |||   || |||||  |||||| ||||||   ||| c
cccg uc cgc gcc   GG ACUGA  UCUGAC AAUgac   ccca 
    g  -   a   aCC  C     CC      -      --u     

>mdo-mir-132 (-37.20)   [mdo-miR-132:42-63]

    a         uuc          g g g 
gggc accguggcu   gauuguuacu u g a
|||| |||||||||   |||||||||| | |  
cccG UGGUACCGA   CUGACAAUgg g c a
    C         CAU          g a c 

>mdo-mir-200c (-35.00)   [mdo-miR-200c:44-65]

  -     -      a        u   -ug  g 
cc ccauc uuaccc gcaguguu ggg   cc c
|| ||||| |||||| |||||||| |||   || u
gg GGUAG AAUGGG CGUCAUAA cuc   gg c
  a     U      C        U   uga  g 

>mdo-mir-141 (-28.20)   [mdo-miR-141:41-62]

ug    c     --    u      g    u  u 
  gggc aucuu  ccag acagug ugga gg g
  |||| |||||  |||| |||||| |||| || a
  ccCG UAGAA  GGUC UGUCAC AUcu uc a
--    -     AU    -      A    -  g 

>mdo-mir-191 (-36.80)   [mdo-miR-191:7-28]

      C          C  AA       uu  -  c 
agcggg AACGGAAUCC AA  GCAGCUg  gu cu c
|||||| |||||||||| ||  |||||||  || ||  
ucgucc uugcuuuagg uu  cgucgac  ua ga a
      c          -  aa       cu  c  g 

>mdo-mir-425 (-34.82)   [mdo-miR-425:54-75]

    u  u     au        cac     u  a  ggaca 
aaag gc uugga  gacacgau   ucccg ug gc     g
|||| || |||||  ||||||||   ||||| || ||     c
uuuc cg aaCCU  CUGUGCUA   AGGGC Ac cg     c
    u  u     GC        -UA     U  -  aagaa 

>mdo-mir-181a (-20.92)   [mdo-miR-181a:3-25]

ugA   U      CU       A    ggaau 
   ACA UCAACG  GUCGGUG GUuu     u
   ||| ||||||  ||||||| ||||     a
   ugu aguugc  cagcuac caaa     a
cca   u      --       -    aguaa 

>mdo-mir-181b (-34.40)   [mdo-miR-181b:13-34]

----aa       aucAA         CUG           aa  g 
      ggucaca     CAUUCAUUG   UCGGUGGGuuu  cu u
      |||||||     |||||||||   |||||||||||  ||  
      ccggugu     guaaguaac   agucacucgaa  gg a
uucacc       -caac         --a           ca  u 

>mdo-mir-200b (-25.52)   [mdo-miR-200b:39-60]

--------c    -    ug     c      uggug 
         cauc uuac  ggcag auugga     u
         |||| ||||  ||||| ||||||     c
         GUAG AAUG  CCGUC UAAUcu     u
gggguaguA    U    GU     A      uugug 

>mdo-mir-200a (-38.92)   [mdo-miR-200a*:14-35] [mdo-miR-200a:51-72]

  --g     g        -             C    uuuuu 
gg   ccucu ugggCAUC UUACUAGACAGUG UGGA     g
||   ||||| |||||||| ||||||||||||| ||||     g
cc   ggaga auuUGUAG AAUGGUCUGUCAC AUcu     a
  aag     a        C             A    caugu 

>mdo-mir-222a (-7.77)   [mdo-miR-222a:27-50]

uguagauacu u    ----uu      gcAGCUACAUCU 
          g cucu      ccauca            G
          | ||||      ||||||             
          c gaga      gguagu            G
---------u -    uucuac      CUCUGGGUCAUC 

>mdo-mir-221 (-30.10)   [mdo-miR-221:47-69]

-  a    -  ug   u         aauu    guuua 
 gc ugaa cc  gca acaauguag    cugu     u
 || |||| ||  ||| |||||||||    ||||      
 cg aCUU GG  CGU UGUUACAUC    GAca     u
u  g    U  GU   C         ----    augaa 

>mdo-let-7f-2 (-38.20)   [mdo-let-7f:5-26]

---    U   GU               ----  ua     ac 
   ggga GAG  AGUAGAUUGUAUAGU    Uu  ggguc  a
   |||| |||  |||||||||||||||    ||  |||||   
   cccu uuc  ucaucugacauauca    ag  ucuag  c
gca    -   ug               auag  gc     cc 

>mdo-let-7a-3 (-35.80)   [mdo-let-7a:5-26]

g   U   GU     GU         ugggggucgcucc 
 ggg GAG  AGUAG  UGUAUAGUU             c
 ||| |||  |||||  |||||||||              
 ccc uuc  ucauc  acauaucaa             u
-   u   ug     ug         uagagugucuguc 

>mdo-let-7b (-47.70)   [mdo-let-7b:8-29]

gg     U                     ucaggguagugauuu 
  cgggg GAGGUAGUAGGUUGUGUGGUU               u
  ||||| |||||||||||||||||||||                
  guccc uuccgucauccaacauaucaa               g
-a     -                     uagaagacuaacccc 

>mdo-mir-29b (-37.00)   [mdo-miR-29b:55-74]

gc           -          u      gu      uua   a 
  uucuucaggaa gcugguuuca auggug  uuagau   acu c
  ||||||||||| |||||||||| ||||||  ||||||   |||  
  aggagguucuu UGACUAAAGU UACCAC  GAUcug   uga u
--           g          U      --      ---   g 

>mdo-mir-29a (-24.90)   [mdo-miR-29a:42-61]

            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uauUGGCUAAAG   ACCACGA Ucuu    u
            UUU       -    uuac 

>mdo-mir-17 (-32.02)   [mdo-miR-17-5p:14-37] [mdo-miR-17-3p:52-72]

    ga       -CA        A  G     G   Ugaua 
guca  auaaugu   AAGUGCUU CA UGCAG UAG     u
||||  |||||||   |||||||| || ||||| |||     g
cagu  uauuacg   UUCACGGA GU ACGUC Auc     u
    ga       AUG        A  G     -   uaaga 

>mdo-mir-18 (-22.10)   [mdo-miR-18:7-28]

u    cU    U   UC   U    A   -  aa u 
 uguu  AAGG GCA  UAG GCAG UAg ug  g a
 ||||  |||| |||  ||| |||| ||| ||  | g
 acgg  uucc cgu  auc cguc auc ac  u a
-    uc    u   ga   c    -   u  ga u 

>mdo-mir-19a (-35.90)   [mdo-miR-19a:49-71]

g   u  u                 --      ---    ag 
 cag cc cuguuaguuuugcauag  uugcac   uaca  a
 ||| || |||||||||||||||||  ||||||   ||||  a
 guc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
-   c  u                 UA      Uug    aa 

>mdo-mir-20 (-43.10)   [mdo-miR-20:24-46]

ugaa  ---g      uuu    c   -A                 G   -  uu 
    ag    acagcu   guag acU  AAGUGCUUAUAGUGCAG UAG ug  u
    ||    ||||||   |||| |||  ||||||||||||||||| ||| ||   
    uc    ugucga   cguc uga  uucacgaguauuacguc auc au  a
--ca  aaga      --u    a   ag                 -   u  ug 

>mdo-mir-19b (-39.52)   [mdo-miR-19b:55-77]

g    guu                 -  -      uc    uguau 
 cacu   cuaugguuaguuuugca gg uuugca  cagc     g
 ||||   ||||||||||||||||| || ||||||  ||||     a
 gugg   ggugucAGUCAAAACGU CC AAACGU  GUcg     u
g    --u                 A  U      --    ucuua 

>mdo-mir-92 (-34.30)   [mdo-miR-92:48-68]

---cu   uac            c   u        gu uc 
     uuc   acagguugggau agu gcaaugcu  g  u
     |||   |||||||||||| ||| ||||||||  |   
     gag   uGUCCGGCCCUG UCA CGUUAUga  u  g
gguuu   --u            U   -        ug cu 

>mdo-let-7a-1 (-34.20)   [mdo-let-7a:15-36]

ucucca  g     U   GU                uuagggucacac 
      cu uggga GAG  AGUAGGUUGUAUAGUU            c
      || ||||| |||  ||||||||||||||||            c
      ga auucu uuc  ucaucuaacauaucaa            a
------  a     -   ug                uagagggucacc 

>mdo-let-7f-1 (-43.30)   [mdo-let-7f:7-28]

    a UG                      ---------       u 
ucag g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| |  ||||||||||||||||||||||         ||||||| a
aguc c  uccguuaucuaacauaucaaua         ucccauu u
    - cu                      gaggacuug       u 

>mdo-let-7d (-50.52)   [mdo-let-7d:16-36]

----aau    u       A              C      -------uua      g 
       gggc ccuagga GAGGUAGUAGGUUG AUAGUu          gggcag g
       |||| ||||||| |||||||||||||| ||||||          |||||| a
       cucg ggauucu uuccgucguccaac uaucaa          cccguu u
uuauuau    -       -              a      uugaggaaca      u 

>mdo-mir-23a (-29.20)   [mdo-miR-23a:42-61]

------   c     -       g    g      auua 
      cgg ugggg uuccugg gaug gauuug    c
      ||| ||||| ||||||| |||| ||||||     
      guc acCUU AGGGACC UUAC CUAaac    u
ucacca   a     U       G    A      accg 

>mdo-mir-27a (-43.50)   [mdo-miR-27a:56-76]

u   uu a     a         ug cu        g   cag 
 ggc  g ggagc ggacuuagc  c  ugugaaca agu   c
 |||  | ||||| |||||||||  |  |||||||| |||   a
 ccg  c ccuCG CUUGAAUCG  G  ACACUUgu uua   u
-   uu c     C         GU --        g   uac 

>mdo-mir-24-2 (-34.30)   [mdo-miR-24:46-61]

-gc       g   a         aaca     --g u 
   cuccugu ccu cugagcuga    caguu   c u
   ||||||| ||| |||||||||    |||||   |  
   gaggaca gGA GACUUGACU    GUcaa   g u
ucu       a   C         --CG     aua g 

>mdo-mir-23b (-35.54)   [mdo-miR-23b:46-66]

      u   --          -  c      gugacu 
ggcugc ugg  guuccuggca ug ugauuu      u
|||||| |||  |||||||||| || ||||||       
ccgacg aCC  UAGGGACCGU AC ACUAaa      a
      c   AU          U  -      aguaga 

>mdo-mir-27b (-52.66)   [mdo-miR-27b:61-81]

-a   -    gaca                  auug        ucacug 
  ccu cucu    aggugcagagcuuagccg    gugaacag      a
  ||| ||||    ||||||||||||||||||    ||||||||      u
  gga gaga    uccaCGUCUUGAAUCGGU    CACUUguu      u
gg   a    --ag                  --GA        ucuccu 

>mdo-mir-24-1 (-20.80)   [mdo-miR-24:40-55]

ggug   a         uaa    uc  au 
    ccu cugagcuga   cagu  ug  u
    ||| |||||||||   ||||  ||   
    gGA GACUUGACU   GUca  ac  u
---a   C         -CG    -c  au 

>mdo-mir-93 (-45.60)   [mdo-miR-93:17-38]

a    ug    g   -cA       -     U    G   u  g u 
 gucu  gggg cuc   AAGUGCU GUUCG GCAG UAG gu a a
 ||||  |||| |||   ||||||| ||||| |||| ||| || | a
 cagg  cccc gag   uucacga cgagu cguc auc ca u c
a    gu    -   acc       u     -    -   -  g c 

>mdo-mir-25 (-38.00)   [mdo-miR-25:52-73]

g     ug   ag    g     uu g     u   g acu 
 gccag  uug  aggc gagac  g gcaau gcu a   c
 |||||  |||  |||| |||||  | ||||| ||| |   u
 cgguc  gac  UCUG CUCUG  C CGUUA Cgg u   g
-     gu   AG    G     UU A     -   g ccc 

>mdo-mir-302b (-33.90)   [mdo-miR-302b:45-64]

ccc        uu               -   gugu 
   cuucuacu  aacauggagguacuu ucu    u
   ||||||||  ||||||||||||||| |||     
   gaggauGG  UUGUACCUUCGUGAA gga    u
--u        UU               U   aaaa 

>mdo-mir-302c (-22.80)   [mdo-miR-302c:37-57]

--   uu             c    acgu 
  gcu  aacauggggguac ugcu    a
  |||  ||||||||||||| ||||    a
  UGA  UUGUACCUUCGUG AUga    u
gg   CU             A    aaaa 

>mdo-mir-302a (-29.30)   [mdo-miR-302a:45-64]

c   c    u         uu          guu 
 cca uacu aaacgugga  uacuugcuuu   u
 ||| |||| |||||||||  ||||||||||   c
 ggu guGA UUUGUACCU  GUGAAUgaaa   u
-   a    U         UC          aaa 

>mdo-mir-302d (-26.43)   [mdo-miR-302d:44-64]

--  u u    u          ug    cugugau 
  cc c gcuu aacauggaag  cuug       u
  || | |||| ||||||||||  ||||       u
  gg g UGAG UUGUACCUUC  GAAU       u
gu  u u    U          GU    uaaaaaa 

>mdo-mir-367 (-21.20)   [mdo-miR-367:38-60]

-----           ca     -c      cu 
     acuguugcuaa  ugcaa  ucuguu  a
     |||||||||||  |||||  ||||||  u
     UGGUAACGAUU  ACGUU  Gggcaa  g
gguAG           UC     AA      au 

>bmo-mir-31 (-51.62)   [bmo-miR-31:21-41] [bmo-miR-31*:58-79]

------------------------guc          -c    aa   AA     C           uugaa 
                           gagccggugg  uggg  GGC  GAAGU GGCAUAGCUGu     u
                           ||||||||||  ||||  |||  ||||| |||||||||||     a
                           uucggccgcc  acuC  CCG  CUUCA CUGUGUCGGca     a
ucguaggcguuuagaacuuuaacuucu          ua    GA   AG     -           cauag 

>bmo-mir-71 (-41.81)   [bmo-miR-71:21-39] [bmo-miR-71*:60-81]

--------------------gcaaga     ucua  u u         U           ugucccgu 
                          ugcuc    cc c UGAAAGACA GGGUAGUGAga        a
                          |||||    || | ||||||||| |||||||||||        c
                          acggg    gg g ACUUUCUGU UCCAUCACUCU        a
uagaaggcuucggcucacuucuauaa     -uua  c U         -           Uaaaaucu 

>ath-MIR822 (-175.60)   [ath-miR822:50-70]

----           a        uaua             c             CG                    cg     a         c   cc           a           -       a   ucguac             auguuaaugucauaaacuuua 
    cgaccuuaagu uaaguaga    uggggauguaacg auguuguuuucUG  GGAAGCAUUUGCACAUGuuu  uggag augaaauca auu  auacaugaaua uaauuaccuuu uagauag aca      ugcuugaaaaaac                     u
    ||||||||||| ||||||||    ||||||||||||| |||||||||||||  ||||||||||||||||||||  ||||| ||||||||| |||  ||||||||||| ||||||||||| ||||||| |||      |||||||||||||                      
    gcuggaauuca auucaucu    accccuacguugc uauaacaaaggac  cuuucguaaacguguacaaa  accuc uauuuuagu uaa  uauguacuuau auuaauggaag aucuauc ugu      acgaacuuuuuug                     g
uguu           c        ----             a             au                    au     c         a   aa           c           u       g   ------             cgaaaaauauccacaaaagua 

>ath-MIR823 (-73.30)   [ath-miR823:120-140]

aauuucagagauacuaauccaagagauggcggauacguuuuacaauc  g                  a          aau  ga  -     a 
                                               ac aaucuuguaugaucacua ccauuggaac   aa  gu auaua u
                                               || |||||||||||||||||| ||||||||||   ||  || ||||| g
                                               ug uUAGAAUAUACUAGUGGU GGUgaucuug   uu  ca uauau a
cugauuaauuaggguuaucuacccccuauacaaagugacaaugguaa  g                  G          -au  ac  c     g 

>ath-MIR825 (-53.80)   [ath-miR825:115-135]

cuuucuauaauuacuuuuuguauagaauucacuaguugauuc        c     a     ag  c  a     u     aa     cu a 
                                          caucgacu guuca gcacc  cu ga gaagc uagcu  uuuau  u g
                                          |||||||| ||||| |||||  || || ||||| |||||  |||||  | a
                                          guaguuga CAAGU CGUGG  GA CU CUUcg aucga  aagua  a a
guguacacucuagguuaaaaccagaaauguguaguuuuauau        a     A     AA  A  -     u     aa     au a 

>ath-MIR826 (-57.00)   [ath-miR826:50-70]

agagacguggaugcuucucguccacaaguucuuu   -  cuc     u      C                   --------     u  ua 
                                  ggu gc   uauga aUAGUC GGUUUUGGAUACGUGaaaa        ucaua ca  u
                                  ||| ||   ||||| |||||| |||||||||||||||||||        ||||| ||   
                                  ucg cg   auacu uauuag ccaaaaccugugcacuuuu        agugu gu  u
cauucucaucguccuuuuucuacuauucuaugug   u  -uu     c      a                   aauugaaa     c  cg 

>ath-MIR827 (-45.70)   [ath-miR827:106-126]

uuccaugaaacguuauagguuuuuuucuuucucucu     -c  u    u u          u a      c  au        ucc 
                                    ugcaa  cc ugaa g guuuguugau g uaucua ac  guugauca   u
                                    |||||  || |||| | |||||||||| | |||||| ||  ||||||||   u
                                    acguu  gg gcuu c CAAACAACUA C GUAGAU ug  uagcuagu   g
-cuacgauuuuuguacuagcucuaagguucuucgcu     uu  u    u U          C A      U  gu        ugu 

>ath-MIR828 (-71.44)   [ath-miR828:50-71]

gugacaaagucacaaaagugauaaacucuccu          u      U                 UC    uaaaaau      -       g 
                                uuccacuuuc aauguu CUUGCUUAAAUGAGUAU  CAug       gauuca cucacuc u
                                |||||||||| |||||| |||||||||||||||||  ||||       |||||| |||||||  
                                agggugaagg uuguaa gaacgaguuuacucgua  guac       uugggu ggguggg a
uuuucuauuuugaguauguacuauaauuuauc          u      c                 ga    uucucuu      u       u 

>ath-MIR829 (-77.50)   [ath-miR829.1:110-133] [ath-miR829.2:134-154]

acgucaaaauugauuaacaaaaagucaaugaauca    a    -u     ug                     ac      a         a      uaa 
                                   uucu ccaa  ugacu  uacuuugaagcuuugauuuga  cuguca uugguauca agcuuc   a
                                   |||| ||||  |||||  |||||||||||||||||||||  |||||| ||||||||| ||||||   u
                                   gaga gguu  acuga  AUGGAACUUCGAAAUUAAACU  GGUAGU AACCAUAGU UCGAag   c
-uaguucuaccauuugagcuucacgaaaaagaaaa    c    cu     uG                     AA      A         C      uuu 

>ath-MIR830 (-49.05)   [ath-miR830*:56-77] [ath-miR830:124-144]

cagagucucgcuagugucuuuacuaaacacaa  uc     a   -  -  a  u c       C        U      g   acauauaauaau  a 
                                aa  uguaa cgc cu cg uc c UCUUCUC AAAUAGUU AGGUUa cug            uc a
                                ||  ||||| ||| || || || | ||||||| |||||||| |||||| |||            ||  
                                uu  acauu gcg ga gc aG G AGAAGAG UUUAUCAA Uccaau gac            ag u
--gcuacaagaaguuuuaaguucgugagagga  ga     a   a  a  a  U A       U        -      a   cucuuugacccc  a 

>ath-MIR831 (-99.00)   [ath-miR831:185-206]

gcacaaugcggacagugcuacaagaagagauuua      c   -      u       c    a       g          -       a      g      uuugugaaucaccaaaacaaguggu 
                                  uagagu uua agaguc caagaag guac aggagau aggagugaau caccaaa caagug uuuugg                         u
                                  |||||| ||| |||||| ||||||| |||| ||||||| |||||||||| ||||||| |||||| ||||||                          
                                  aucuca agu ucuuag GUUCUUC CAUG UUCUCUA Ucuucauuug gugguuu guucac aaaacc                         u
-uccgaaaaaccauuugguacggcuacaauguac      c   a      c       U    C       G          u       -      -      cauuugguaugacuaaguguuuggu 

>ath-MIR832 (-127.30)   [ath-miR832-5p:50-70] [ath-miR832-3p:266-286]

aagaaagaaaaaauaagugacaaguaacaaa    ------           a      G    C              c      c   u     -      ---u           agugaaaguaaacuugugaugugaccauauugugcaauaugaauguaaguuggug 
                               caug      agaaaggugaa cuUGCU GGAU GGGAAUCGAAAgau cgaaag cag cuuua gaggau    cugaacgggcu                                                       g
                               ||||      ||||||||||| |||||| |||| |||||||||||||| |||||| ||| ||||| ||||||    |||||||||||                                                       u
                               guac      uuuuuccacuu GAACGA CCUA CCCUUAGUUuucua gcuuuc guu gaagu cuucua    gauuugcccga                                                       g
------guuuuaaaccuauaaaacauuucca    cguuuu           g      A    A              c      c   c     u      cuac           cuacgaaagcaauucuuuuauucacucuacugaaucgguggaacacucuacuggu 

>ath-MIR833 (-93.70)   [ath-miR833-5p:54-75] [ath-miR833-3p:115-136]

----  ac    a  guac     c     g    c     a          g             U  -                  aa    c  u 
    gg  guag ug    ucuua agaug ugau gugaa acaaacggag aguuUGUUUGUUG AC UCGGUCUAGUucaaacca  acau uu g
    ||  |||| ||    ||||| ||||| |||| ||||| |||||||||| ||||||||||||| || ||||||||||||||||||  |||| ||  
    cc  cguc gc    agaau ucuac acua cacuu uguuugcuuc ucGAACAAACAAC UG AGCCAGAUcgaguuuggu  ugua aa c
cuca  -a    -  --aa     u     a    c     a          g             -  U                  -a    u  a 

>ath-MIR834 (-86.63)   [ath-miR834:178-198]

uacaacauauguuaccaguugugcuaucauuuuuuucagcgacagccaaaauc         u       g   a     a    uccuuuuaaccguu     cacc        g ---    -ca  a  a 
                                                     accaccgcu cugcuac aac uguua gcca              gcugc    acuauuac g   ccau   ca ga a
                                                     ||||||||| ||||||| ||| ||||| ||||              |||||    |||||||| |   ||||   || ||  
                                                     UGGUGGCGA GACGAUG Uug acagu uggu              cgacg    ugauagug c   ggug   gu cu a
acugacgaagacuguggugguuacgaagguaacggcgagugcgauagccguAA         U       G   c     a    --------------     ---a        g aaa    aac  a  u 

>ath-MIR835 (-157.90)   [ath-miR835-5p:50-70] [ath-miR835-3p:363-383]

ugcucgauucuucagauagaaauucuggucau           -             A   G          c   u   u a    g        g  a   a  u      uc            uuugaugguuuuaagaacucuguucuuuuugacguuuuacccaacaauauaacuucuguuguagucaucuucugcugcaacccaucca 
                                cuuuguguuua ggcuuuUUCUUGC UAU UUCUUUAUCu uau gau g uauu uucaauga ca cau cu uucucu  uaccuggauuug                                                                                        c
                                ||||||||||| ||||||||||||| ||| |||||||||| ||| ||| | |||| |||||||| || ||| || ||||||  ||||||||||||                                                                                        a
                                gaaacacaaau uugaGAAAGAACG AUA AAGAGGUaga aua cua c auaa aaguugcu gu gua ga aagaga  auggaccuaaac                                                                                        a
-------------------------------c           g             C   G          a   u   u a    -        a  c   g  u      uu            acugcaaaaagggguuguuacaaugaagauaaaaucacuacaagagaacguuggguagcucuuucccaaauuagaacguacuauucga 

>ath-MIR836 (-172.81)   [ath-miR836:263-286]

g          a   --ua         a            g    c          c               ua     g uaua          -  gg  a    uu     c            c  ua                    ccuucaacaaaaauaccccccucuu       
 caaagcugcc uuu    uaguccaaa cuuaaauuucgu uuug aagucuccac caucgaaggaaacac  gaaga a    auuuauuuga gg  ag aaua  ugaca ggaagcauagcu ca  uccuucaauggagguguggu                         gaaacu 
 |||||||||| |||    ||||||||| |||||||||||| |||| |||||||||| |||||||||||||||  ||||| |    |||||||||| ||  || ||||  ||||| |||||||||||| ||  ||||||||||||||||||||                         ||||| c
 guuuugacgg aaa    aucggguuu gaauuuaaagca aaau uucagaGGUG GUAGUUUCCUUUGUG  CUuuu u    uaaauaaacu cc  uc uuau  acugu ccuucguaucga gu  aggaaguuaccuccacacca                         cuuugu 
-          c   uaaa         -            a    u          C               UC     g cucg          a  au  c    --     u            a  cc                    -------------------------       

>ath-MIR837 (-86.60)   [ath-miR837-5p:55-75] [ath-miR837-3p:113-133]

u            c         c                a           u         C             a       uuuu   uu 
 uuuugauaaaua uuuuguuug uuacaaguauaaaguc ucauguuuuuu cAUCAGUUU UUGUUCGUUUCAa auuauga    ugu  a
 |||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||    |||   
 aagauuauuuau aaaauaaau aauguucauauuucag aguacaaaaaG GUAGUCAAA AACAAGCAAAguu uaauacu    aca  c
a            a         a                g           -         A             c       ---c   uu 

>ath-MIR838 (-81.70)   [ath-miR838:136-156]

---uacuuuucuaauaucac        ac          guc    g   u             g     c      u    a     ----    aga      cu 
                    gaggacuu  auggccucaa   accu ugg guugugcaagaag agaag aaaguc gucu uguau    uaug   uagcua  u
                    ||||||||  ||||||||||   |||| ||| ||||||||||||| ||||| |||||| |||| |||||    ||||   ||||||   
                    cuucugaa  uaucggaguu   ugga guc caACACGUUCUUC UCUUC UUUcgg caga acaug    auau   aucggu  c
auuauuuauuguaauaucuu        ca          -au    -   -             A     U      c    -     uugu    agg      au 

>ath-MIR839 (-182.80)   [ath-miR839:50-70]

-                         g     uau    uuca                     -            u                   a     ug  a  g             c  c      
 cucacucaugugagcagaaagagua cauga   uuuc    aggucuuUACCAACCUUUCAU CGUUCCCuucuu gcaauaacgcuguuuugca aaccg  au gu cugagccgaugag cu uaaug 
 ||||||||||||||||||||||||| |||||   ||||    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||  || || ||||||||||||| || |||| a
 gagugaguacacucguuuuucucau guauu   aagg    uccagaaaugguuggagagua gcaagggaagag cguuauuguggcaaaacgu uuggc  ua ca gacucggcuacuc ga auuaa 
u                         g     -cu    uaac                     c            u                   g     gu  c  g             a  u      

>ath-MIR840 (-99.69)   [ath-miR840:50-71]

---      g   guga    -     u    uuuacauc   a          C     A          U            c  c   g       gg   ua  c    uuu 
   cguaaa cag    uuca ccaau uagg        cac guguggaagA ACUGA GGACCUAAAC AACaaagguaaa gg uca ugugcgg  uau  ca ucgg   a
   |||||| |||    |||| ||||| ||||        ||| |||||||||| ||||| |||||||||| |||||||||||| || ||| |||||||  |||  || ||||    
   guauuu guc    gagu gguua gucc        gug cauaucuucu ugauu ccuggauuug uuguuucuauuu uc agu gcacgcc  aua  gu aguc   a
cca      g   ----    a     u    uaaccuaa   c          u     c          u            c  u   a       ua   gc  a    ugu 

>ath-MIR841 (-86.20)   [ath-miR841:50-70]

g      ca u       -gc   a      u    a      u           G     U    C     g           caauaucaguauaaaauuuuau 
 caccaa  c acuaugu   aga acucug ucuu aguugc ugugaaUACGA CCACU GAAA UGAAa aaacaaagaaa                      c
 ||||||  | |||||||   ||| |||||| |||| |||||| ||||||||||| ||||| |||| ||||| |||||||||||                       
 gugguu  g ugguaca   ucu ugagau agaa ucaacg acacuuaugcu gguga cuuu acuuu uuuguuucuuu                      a
-      ca c       aca   a      c    c      u           g     u    a     a           aaaguaaaaaacaucauauuaa 

>ath-MIR842 (-71.10)   [ath-miR842:128-148]

caguaccguucagggugacagaaacauuuucgaaaa      c      c         a   c               gca  aa  ua  u ug   u 
                                    gagagg uauaag gggaugaug auc gaccaugaugguguu   ga  uu  ug a  aug a
                                    |||||| |||||| ||||||||| ||| |||||||||||||||   ||  ||  || |  |||  
                                    uucuuu guauuc cCCUACUGC UAG CUGGUACUaccacaa   cu  ag  ac u  uau g
cucgaagugaaaaguuaacagguauaaacaacugga      u      a         C   A               -ag  --  gg  c gu   u 

>ath-MIR843 (-88.10)   [ath-miR843:50-70]

aaugcccaaca      c       c      c    u    a uu                    U     caa         ca       auuacuaaa   a 
           acuucg guuauuu ugaaaa uuca aucu u  ucuUUUAGGUCGAGCUUCAU GGAac   augguggcu  uccaucu         gcu u
           |||||| ||||||| |||||| |||| |||| |  |||||||||||||||||||| |||||   |||||||||  |||||||         |||  
           ugaagu caauaaa acuuuu gagu uaga a  agaaaaucuagcucgaagug ccuug   uacuaccga  aggugga         cga a
caccucuuaca      a       a      a    u    c uc                    u     uac         ac       ---------   c 

>ath-MIR844 (-67.60)   [ath-miR844:55-75] [ath-miR844*:114-134]

-------ggaagga    uuu     ug    aau  aucuuuu                a         U           g   cuug    u   u 
              gaug   gcagu  guuu   ga       acauugaagagaagga UGGUAAGAU GCUUAUAAGCU gau    aggg gag g
              ||||   |||||  ||||   ||       |||||||||||||||| ||||||||| ||||||||||| |||    |||| |||  
              cuau   cgucg  cagg   cu       uguaacuuuucuucUU AUCAUUCUA CGAAUAUUcgg uua    ucuu cuc g
uguuuacuagugga    uuu     --    aau  -----gu                G         C           g   cgca    -   u 

>ath-MIR845a (-58.30)   [ath-miR845a:92-112]

-------agau      uu     auu  --u    aguucc    cugc        ca         c          a   cu  g 
           aaggga  gcacg   uc   caau      gucg    guuuccau  cgucgauug ugucagagcc cgc  au a
           ||||||  |||||   ||   ||||      ||||    ||||||||  ||||||||| |||||||||| |||  || a
           uuuccu  ugugc   ag   guua      uagc    caaaggua  GUAGUUAAC AUAGUCUCGG gug  ua g
uguuguuccau      -u     cuu  ucc    ------    --ua        uc         C          C   uu  a 

>ath-MIR846 (-110.60)   [ath-miR846:288-308]

-caaa   --c      ---   uu  -ggu   u        ugccac   c   u c       g     u         a   u   u     c   a  a  u            u     c    a         auucaagggacaaaaaaucauugggauauaugauuaugacaaacac 
     cau   uugaau   ccg  ga    uga cacgauga      auc ggu u auucaag acuuc auucagaac aac uca gauuu uga cu au ggauaugauaaa gguaa aagu uucacuugc                                              g
     |||   ||||||   |||  ||    ||| ||||||||      ||| ||| | ||||||| ||||| ||||||||| ||| ||| ||||| ||| || || |||||||||||| ||||| |||| |||||||||                                               
     gua   agcuua   ggc  cu    gcu guguuauu      uag cca a UAAGUUC UGAAG UAAGUUuug uug agu cugaa gcu ga ua ccuauacuauuu ucauu uuca aggugaacg                                              a
aacca   auc      aau   -c  augu   c        ------   a   c U       G     U         a   u   u     a   c  c  c            -     c    a         ucuaguaauagggugacgaacggagggcguugguaagucgaagguu 

>ath-MIR848 (-67.60)   [ath-miR848:123-144]

aaaacuuuca a    -  a   -   uau   -aaa  au     ---        a      -    a            u    aaa   a       cca 
          g uugc ac aga gaa   gaa    gu  uaaca   caagccuu uagcuu ggca ucucaugucaaa aagg   aga gaggaac   a
          | |||| || ||| |||   |||    ||  |||||   |||||||| |||||| |||| |||||||||||| ||||   ||| |||||||   g
          c aacg ug uuu cuu   cuu    ca  auugu   guucggaa AUCGAA CCGU AGGGUACAGUuu uucc   ucu cucuuug   g
----auuuca c    c  c   a   --u   ccua  cu     acc        -      U    C            c    --a   a       uau 

>ath-MIR849 (-70.62)   [ath-miR849:118-138]

------------uaauuugguuaaa    uu     uuuuuuauuuauuuau  -              g                  c      ug uauaagua 
                         uguu  caaca                ga uuggacaacuacua accaauguuuaguuagua auccaa  u        c
                         ||||  |||||                || |||||||||||||| |||||||||||||||||| ||||||  |        a
                         gcga  guugu                cu agccuguugAUGAU UGGUUACAAAUCAAUcau uagguu  g        a
guuaauuuggucccuaguuagaaga    gg     -------------uau  c              G                  c      gu uauaauaa 

>ath-MIR850 (-66.70)   [ath-miR850:50-71]

u    g     g        uua     ---ua  -ua       c g     U     C  G  U     A   cac  c      acuaua            aaucaa    u 
 uuua auagu uuauguau   uuucu     cc   uagaaac u ucagc AAGAU CG AC ACAAC AAG   gu uacucu      uucuuuugcgau      uaga u
 |||| ||||| ||||||||   |||||     ||   ||||||| | ||||| ||||| || || ||||| |||   || ||||||      ||||||||||||      ||||  
 aagu uauca aauacaug   aaaga     gg   aucuuug a aguug uucua gc ug uguug uuc   ca augaga      aaggaaaugcua      aucu c
-    a     a        ---     uacac  uaa       a g     u     u  -  c     a   aua  u      aaacag            ----ca    u 

>ath-MIR851 (-68.90)   [ath-miR851-5p:50-70] [ath-miR851-3p:119-139]

uuuucuuucuuuuccuuuucguuugauuuuggaaagca     c        CG   C  G       A   au        ga    a g 
                                      aggga ugucgUCU  GUU GC AUCCACA Gua  cuuuugug  gauu u a
                                      ||||| ||||||||  ||| || ||||||| |||  ||||||||  |||| |  
                                      ucccu aCAGCAGA  CAA CG UGGGUgu cau  gagagcac  cuaa a a
ucaaguguacuauaaaguucaagacuaccuugaccuua     a        AA   A  G       g   cg        ua    c a 

>ath-MIR852 (-80.60)   [ath-miR852:137-157]

uuuauccuaaacauccuauuaaguuuuuaugcugaaacaaagcucaaagc                                -g      --    g      cu 
                                                  ucagagcuaaggcgcuuaucuucuuugauauu  caugga  guau cuucua  u
                                                  ||||||||||||||||||||||||||||||||  ||||||  |||| ||||||   
                                                  aGUCUUGAUUCCGCGAAUAGAAgaaacuauaa  guauuu  cgua gaggau  c
uggauuguuucuuauguuggaauacguaaaacacuuauuccgcgaauaga                                ag      ug    -      cu 

>ath-MIR853 (-94.30)   [ath-miR853:50-71]

gagaggaacaauuaggguuguuucaa         ----------   g   c            C  UA C   G   A    -            cucuucaaggaacuugugggccucaagaaaaccugcuauaauucuaguuuuucaacau 
                          acaggguaa          agu uuc ugcugcUCCCCU UU  G UUG AGA Gcca guaaauaucuuu                                                          u
                          |||||||||          ||| ||| |||||||||||| ||  | ||| ||| |||| ||||||||||||                                                           
                          ugucccauu          uca aag acgacgagggga ag  c aac ucu cggu cauuuauagaaa                                                          c
---------uagacaaaaacuguuua         cccaauuuuc   -   u            a  gc -   g   c    u            cuccuucaagguaagagguaagaauucccauuccucaacaacgacuauagucuuccuc 

>ath-MIR824 (-198.82)   [ath-miR824:35-55]

u         u  a   -----------    ug    u               U             uuuuguuuac     -  c -     g       a    uaaga      --au   - ---a       aacauagcuaguucgacauaccauacuacccuuuuuaaaacuauccuauauguuugaugcuagcauagcguaauuuuguguucucauggugcagcaggguuaguuuauuguguaccucuagauauauauucucuugcugcguaggguucccaagcugccaaaaacuuuuaaaaauuagugaucuguuccccaaacccccauucaauaagaaaggucuac 
 aucaccauu gu cuu           gagu  ucuc caugucUAGACCAUU GUGAGAAGGGAgu          accaa ua c cccca ucucuaa uuug     aguauu    gcu c    auuaagg                                                                                                                                                                                                                           c
 ||||||||| || |||           ||||  |||| ||||||||||||||| |||||||||||||          ||||| || | ||||| ||||||| ||||     ||||||    ||| |    |||||||                                                                                                                                                                                                                           u
 uagugguaa ca gaa           cuca  ggag guguagaucugguag uacucuucccuua          ugguu gu g ggggu agggguu aaau     uuauaa    cga g    ugguucc                                                                                                                                                                                                                           g
-         -  a   auggagguacu    gu    c               c             -------uau     u  a a     g       a    cuaug      gaau   u guac       acauuuacuaaaauauacuaaaacucuuagccgaaccugaucaagcuuauguuuauuuuuuucaauacauacguuguagaccuuuucaguacuuacuugaauuagcugaaugaagauauggauugaagacuuccuagucugaaaguaucccauugauuaauugauuuugucauuuggguuucuucguuccugucgagauuaucgacacugacacucgau 

>ath-MIR847 (-73.88)   [ath-miR847:159-179]

cauuuucuuguauucaaaguaucuuaaguuaagaaga      --            uu  u        a  gg a     aaucuaaac       g  gc     ---     u 
                                     gaauaa  gauucuuacauc  ga gaagagga ug  a gccga         ugaaaca ag  gucac   ccaau a
                                     ||||||  ||||||||||||  || |||||||| ||  | |||||         ||||||| ||  |||||   ||||| u
                                     cuuauu  uuaagaauGUAG  CU CUUCUCCU AC  u cggcu         gcuuugu uc  uagug   gguua c
--uauagauugucuaaaaagugagguagauuacacag      gu            UU  U        C  Uu c     cuaugucua       a  ua     aau     a 

>ath-MIR855 (-85.30)   [ath-miR855:7-28]

uuuuggA         AAG  -      --A       ac     u   u      uua    ggagugucgaucgacacacucuuggugucgaucgacaccaguuucggcccagcaaaaacccuagacgcuuucgagu 
       GCAAAAGCU   GA AAAGGA   gauaagg  gauuu ggu cuggaa   gcga                                                                            u
       |||||||||   || ||||||   |||||||  ||||| ||| ||||||   ||||                                                                            u
       cguuuucga   cu uuuucu   cuauuuu  uugaa cca gauuuu   uguu                                                                            a
accaaaa         --a  a      gaa       cu     u   -      ---    auauauaucugggauuuuugcaggugccugauuauuacguuuauuacuuuagaagaucccguuugaacucgagaac 

>ath-MIR854a (-66.80)   [ath-miR854a:3-23]

    --U AG A   -          uaugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucauagaaacaaca 
cgGA   G  G UAG GGAGGAGGAG                                                                                     g
||||   |  | ||| ||||||||||                                                                                     u
gccu   c  c auc ucuucucuuc                                                                                     a
    uau ga -   a          gucgaauagaacaggcagucuuugcacuaccgaaacuucgugaacuauucaucggauagaacaaagaacgugguggagacguuga 

>ath-MIR854b (-65.80)   [ath-miR854b:3-23]

    -----  A  AUAG            ugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucacagaaacaaca 
cgGA     UG GG    GGAGGAGGAGua                                                                                   g
||||     || ||    ||||||||||||                                                                                   u
gccu     ac cc    ucuucucuucgu                                                                                   a
    uaucg  a  ---a            ugaauagaacaggcagucuuugcacuaccggaacuucgugaacuauucauuggauagaacaaagaacgugguggagacguuga 

>ath-MIR854c (-66.60)   [ath-miR854c:3-23]

    --U AG A   -          uaugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucacagaaccaaca 
cgGA   G  G UAG GGAGGAGGAG                                                                                     g
||||   |  | ||| ||||||||||                                                                                     u
gccu   c  c auc ucuucucuuc                                                                                     a
    uau ga -   a          gucgaauagaacagacagucuuugcacuaccgaaacuucgugaacuauucaucggauagaacaaagaacgugguggagacguuga 

>ath-MIR854d (-65.80)   [ath-miR854d:3-23]

    -----  A  AUAG            ugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucacagaaacaaca 
cgGA     UG GG    GGAGGAGGAGua                                                                                   g
||||     || ||    ||||||||||||                                                                                   u
gccu     ac cc    ucuucucuucgu                                                                                   a
    uaucg  a  ---a            ugaauagaacaggcagucuuugcacuaccggaacuucgugaacuauucauuggauagaacaaagaacgugguggagacguuga 

>hsa-mir-675 (-48.30)   [hsa-miR-675:10-32] [hsa-miR-675*:45-64]

       u    U    A      CC      gacu 
cccaggg cUGG GCGG GAGGGC  ACAGUG    u
||||||| |||| |||| ||||||  ||||||     
ggguccc gACU CGCC CUCCCG  UGUCgc    g
       c    -    A      UA      agug 

>cbr-mir-784 (-36.20)   [cbr-miR-784:9-30]

      a     A     CC          -     aa 
cuacca gUGGC CAAUA  UGUAUGUAGA uagug  g
|||||| ||||| |||||  |||||||||| |||||   
gguggu caccg guuau  acauacaucu guuau  u
      c     a     cc          u     aa 

>cbr-mir-785 (-43.16)   [cbr-miR-785:67-87]

--uu  ucuu   ca                 c   g       -   aauucg 
    gc    ucg  accgucagcacagagug uuc acuuaca cag      u
    ||    |||  ||||||||||||||||| ||| ||||||| |||      a
    cg    agu  ugguAGUUGUGUCUCAU AAG UGAAUgu guc      a
aagu  ---u   ag                 -   -       a   aaccaa 

>cbr-mir-786 (-35.20)   [cbr-miR-786:55-77]

     -c  uc     a       aa    u      uac   a  a 
gggac  cu  ccaac aaaucuc  auag ggcauu   aca gc a
|||||  ||  ||||| |||||||  |||| ||||||   ||| ||  
cucug  ga  gguUG UUUAGAG  UGUC CCGUAA   Ugu ug u
     aa  gu     G       CA    -      ---   a  g 

>cbr-mir-787 (-24.16)   [cbr-miR-787:56-78]

-   caaaa      --   a        -   aau      uagcuc 
 ccu     uggaga  aga ggaaacua gac   cuuaca      a
 |||     ||||||  ||| |||||||| |||   ||||||      a
 ggg     aucucu  UCU CUUUUGAU CUG   GAAUgu      a
a   -----      cc   C        U   CUC      cuaaua 

>cbr-mir-788 (-31.60)   [cbr-miR-788:10-35]

a u   u      C      AUG U          ---    a 
 c aac uuUCCG UUCUCA   C CCAUUUGCAA   aauc a
 | ||| |||||| ||||||   | ||||||||||   |||| a
 g uug aaaggc aagagu   g gguaaacguu   uuag u
a u   c      c      --a -          cuu    u 

>cbr-mir-789 (-42.70)   [cbr-miR-789:58-80]

u  c   -ac   gg           c          u   cg   aa 
 ug ccg   uuc  auucacguggu auccaggcgg gca  uua  a
 || |||   |||  ||||||||||| |||||||||| |||  |||  g
 ac ggc   agg  uaAGUGUACCA UGGGUCCGUC CGu  aau  a
-  u   aua   ga           C          C   -a   au 

>cbr-mir-790-1 (-36.50)   [cbr-miR-790:17-38]

     c ----u    a   C        C  G   A     -   acuuc 
aaguc c     uccg uug UUGGCACU GC AAC CCGCG auc     c
||||| |     |||| ||| |||||||| || ||| ||||| |||      
uucag g     aggu aac aacuguga cg uug ggcgc uag     a
     a uuugu    a   c        c  a   a     c   cuaua 

>cbr-mir-790-2 (-29.30)   [cbr-miR-790:6-27]

-ga   C        C  G   A     -  cg 
   cug UUGGCACU GC AAC CCGCG gu  a
   ||| |||||||| || ||| ||||| ||  a
   gac aacuguga cg uug ggcgc ca  g
gua   c        c  a   a     u  uu 

>cbr-mir-791 (-31.70)   [cbr-miR-791:53-75]

   uuc          u    c   --ug     -ag    auc 
gaa   ucgaucaccg auca gug    gccaa   ucaa   c
|||   |||||||||| |||| |||    |||||   ||||    
cuu   agcuaGUGGU UAGU CGC    CGGUU   aguu   a
   uuc          U    -   CUCA     Aca    auu 

>cbr-mir-792 (-19.00)   [cbr-miR-792:61-83]

     --c        au         a     -gu   agg   u 
gaaaa   aucgaaaa  gagaaaauu uaauu   ugg   uug g
|||||   ||||||||  ||||||||| |||||   |||   ||| a
cuuuu   UGGCUUUU  CUUUUUUAA GUUaa   auc   aac c
     ucc        AU         A     agu   -aa   a 

>cbr-mir-235 (-24.50)   [cbr-miR-235:56-77]

ucc    c     u  cc  u    u     -  -    acu 
   gauc ggcca gg  aa ugca auauu gc uuuu   u
   |||| ||||| ||  || |||| ||||| || ||||    
   cuAG CCGGU CC  UU ACGU UAUaa cg aaaa   u
agu    A     -  CU  C    -     g  u    cuu 

>cbr-mir-242 (-33.00)   [cbr-miR-242:28-48]

caa       aag     aaaa          U   CCU     U    a  ccc 
   uucuucu   ccaaa    gaauaUUGCG AGG   UUGUU CGAa ga   a
   |||||||   |||||    |||||||||| |||   ||||| |||| ||    
   aaggaga   gguuu    uuuauaacgc ucc   aacga gcuu uu   a
gua       --a     ----          u   ucu     c    g  aaa 

>cbr-mir-255 (-37.60)   [cbr-miR-255:57-78]

    u      -auu   ag             g        c   ag 
gaug cucuuc    auc  guaagaaaucuuu uaguuuuc gcg  u
|||| ||||||    |||  ||||||||||||| |||||||| |||   
cuac gaggag    uaG  CAUUUUUUAGAGA GUCAAAag ugc  c
    -      gccu   -A             A        -   aa 

>cbr-mir-359 (-28.32)   [cbr-miR-359:55-76]

    aa       -c  u     c   u u    u    aacuu 
gaca  ucuucau  cg cagag aua c cagu acac     c
||||  |||||||  || ||||| ||| | |||| ||||     c
cugu  agaagua  GC GUCUC UAU G GUCA Ugug     u
    --       AA  U     C   U -    C    auaaa 

>cbr-mir-392 (-29.20)   [cbr-miR-392:58-79]

aaauc   c  uu        u       u     g     aaa  aa 
     cug au  aucugaca cucacau auuga gauau   cu  a
     ||| ||  |||||||| ||||||| ||||| |||||   ||   
     gac ua  uagauUGU GAGUGUA UAGCU CUAUa   ga  u
-uuua   -  -u        C       C     A     -aa  aa 

>ath-MIR856 (-110.60)   [ath-miR856:28-49]

      aaga           u  c    AUC    C          G    auca       --     a  -    c        ga          gua  g     u    u   -a        u  auuuua    c 
auguau    ggugagacugu gg uuUA   CUAC AAUAACUUCA Cugc    ugaagag  uagac ga gauu uggcgguu  ggguuucuuc   ga guuga cgau cuu  auguccug gg      aguu c
||||||    ||||||||||| || ||||   |||| |||||||||| ||||    |||||||  ||||| || |||| ||||||||  ||||||||||   || ||||| |||| |||  |||||||| ||      |||| c
uacgua    cuauuuugaca cc aaau   ggug uuauugaagu gacg    auuucuc  aucug cu cuaa aucgccga  uccaaagaag   cu uaacu gcua gaa  uacaggau uc      ucaa a
      ----           c  a    -au    u          a    ----       ua     g  a    c        -g          aac  g     u    -   ca        -  --guug    a 

>ath-MIR857 (-116.86)   [ath-miR857:344-364]

     c        caa       c             ga      cacccaaaa     ug     g   g            uuuaaaauagugacuuguuuuuuuuaaaauguuuuuuaagaauguuuuuucagcuuuuuauuuuauuuuaaaccuaaagguagcgugacuauuguggagaaaua 
uucga uccuacaa   acuuuca cauacaaaauaau  agaaaa         agguu  aaugu uga guuagucucauu                                                                                                        a
||||| ||||||||   ||||||| |||||||||||||  ||||||         |||||  ||||| ||| ||||||||||||                                                                                                         
aggcu aggauguU   UGGAAGU GUAUGUUUUauug  ucuuuu         uuuaa  uuacg gcu caauuagaguaa                                                                                                        a
     a        AUG       U             aa      -uuuagauc     gu     a   g            uuaucuuuuacagauauaaggcaaauuuuaucacuguaacaaaaauuuauauauaaaauuuuguuguagaaugauauuugguuuuuauaaaaaagaauacaaag 

>ath-MIR858 (-49.34)   [ath-miR858:11-31]

    ----  -uuu      -         CG    Ug     g   ucuccuca     cuaauacgcgcuuuaucguuuauuucauucauccauc 
cuca    uc    gUUUCG UUGUCUGUU  ACCU  gucuc auc        aaacc                                     c
||||    ||    |||||| |||||||||  ||||  ||||| |||        |||||                                      
gagu    ag    caaagc agcagauag  uggg  uaggg uag        uuugg                                     u
    cuuu  uuuu      u         -a    gu     g   --uuauug     cuauuugguacaugcaaucaaauacuacuaguauucu 

>ath-MIR859 (-63.42)   [ath-miR859:18-38]

               a    C           GU             gaauuaacauua       u 
aaagguagaugucga aUCU UCUGUUGUGAA  CAAAcaugaguau            auggauc u
||||||||||||||| |||| |||||||||||  |||||||||||||            ||||||| u
uuucuaucugcagcu uaga agaugacacuu  guuuguacucaua            uacuuag u
               a    u           ug             -----------a       u 

>ath-MIR860 (-64.70)   [ath-miR860:86-106]

  g             c                         g    a ua   --     cu 
au ucuugguuaaauu aauauauauaguccaaucuauugaa uacu g  cac  cagcu  a
|| ||||||||||||| ||||||||||||||||||||||||| |||| |  |||  |||||   
ua agaaucaguuuaa uuaUAUGUAUCAGGUUAGAUAACUu auga u  gug  gucga  a
  g             a                         g    a gg   ua     au 

>ath-MIR861 (-56.30)   [ath-miR861-5p:24-44] [ath-miR861-3p:93-113]

            uc   c  u           A    G     Au      cg    -  ug   a 
guaucauuguuu  gaa ga guCCUUGGAGA AUAU CGUCA  ggaguc  ucuu cu  aga g
||||||||||||  ||| || ||||||||||| |||| |||||  ||||||  |||| ||  ||| c
caugguaacaaa  cuu cu CAGGAACUUCU UAUA GUAGu  ucuuag  agag ga  uuu a
            --   u  u           G    G     ac      ua    u  gu   u 

>ath-MIR862 (-62.70)   [ath-miR862-5p:11-31] [ath-miR862-3p:75-95]

            CAA      G                      -aca  g 
acaguaguuuUC   UAGGUC AGCAUGUGCugaaacugugugu    ga u
||||||||||||   |||||| ||||||||||||||||||||||    ||  
ugucaucaGAAG   AUCUAG UCGUAUAcgacuuugacacaca    cu u
            UUC      G                      aaua  c 

>ath-MIR863 (-140.20)   [ath-miR863-5p:48-68] [ath-miR863-3p:239-259]

   auaag                       gggg           c             A       a      a  c                       a        u              gaa       aaca      ---     a 
cuc     auguagaaacuagagaagaguuu    gaaaacucuuu UUAUGUCUUGUUG UCUCAAU gcauug ua aauguauauauaugcaauuuaga uauguuuu ccuaauuugaauaa   auagaua    ugaaua   aguau u
|||     |||||||||||||||||||||||    ||||||||||| ||||||||||||| ||||||| |||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||   |||||||    ||||||   |||||  
gag     uacaucuuugaucuuuuuucaaa    cuuuugagaaa AAUACAGAACAAC AGAGUUa cguaac au uuguauauauauauguuggaucu auacaaag ggauuaaacuuauu   uauuuau    auuuau   uuaua a
   gagaa                       --ag           U             G       g      c  a                       a        u              ---       -aag      ccu     u 

>ath-MIR864 (-26.27)   [ath-miR864-5p:4-24] [ath-miR864-3p:70-91]

      -     G        C     ----auaccuu      aua 
gcuUCA GGUAU AUUGACUU AAAaa           gaaacu   a
|||||| ||||| |||||||| |||||           ||||||   a
cGAAGU CCAUA UAACUGAA Uuuuu           cuuuga   c
      U     A        A     aguuuaaguuu      cuc 

>ath-MIR865 (-43.00)   [ath-miR865-5p:9-29] [ath-miR865-3p:108-128]

   c        A       CU A     c     au    uuuu      cu       uuca  uccuu 
gau ugggAUGA UUUGGAU  A UUGAG aaaaa  ugug    uucaau  auugaau    ca     a
||| |||||||| |||||||  | ||||| |||||  ||||    ||||||  |||||||    ||      
cua acccuacu aAACCUA  U AACUC UUUUU  acgc    aaguua  uaacuua    gu     a
   a        a       UU A     C     au    -uuu      uc       -uac  uccca 

>ath-MIR866 (-58.60)   [ath-miR866-5p:18-38] [ath-miR866-3p:92-111]

    -c   u               A              u             --cc   aag 
ucau  uau cuuacuuuUCAAGGA CGGAUUUUGUUAAc aaaugauucacac    uug   a
||||  ||| ||||||||||||||| |||||||||||||| |||||||||||||    |||    
agug  aua gaaugAGAAGUUUCU GCCUAAAACAauug uuuacuaagugug    agc   a
    uu   u               -              c             cucu   aca 

>ath-MIR845b (-41.10)   [ath-miR845b:61-82]

     --        ca        -gc         a    augau  au 
agucg  guuuccau  cgucaauu   uaucagagc acgc     gu  a
|||||  ||||||||  ||||||||   ||||||||| ||||     ||   
uuagc  caaaggua  GUAGUUAA   AUAGUCUCG Ugcg     ca  a
     ua        ac        ACC         C    --aau  au 

>ath-MIR867 (-39.10)   [ath-miR867:24-44]

   -c           a      c        G  U   U         -   ---   a 
aca  auaaaacuagu uauugc UUGAACAU GU UAU AGGAAagac aug   aga c
|||  ||||||||||| |||||| |||||||| || ||| ||||||||| |||   ||| a
ugu  uauuuugauua guaaug aacuugua ca aua uccuuuuug uac   ucu u
   uu           a      a        a  u   u         a   aag   a 

>ath-MIR868 (-83.70)   [ath-miR868:166-186]

   -u                      u  a     ----au    agcuau       c            u    a     g           gag 
gaa  aagcauugucggcacuugagaa gu aagug      gauc      cguauuu augucguaauag aguc cguua ggugauauaac   g
|||  |||||||||||||||||||||| || |||||      ||||      ||||||| |||||||||||| |||| ||||| |||||||||||   c
cuu  uuCGUAAUAGUCGUGAAUUCUU ca uucac      uuag      gcauaaa uacaguauuauc uuag gugau cuacuauauug   g
   uc                      C  g     aaaauu    -guuuu       a            u    c     a           aga 

>ath-MIR869 (-163.10)   [ath-miR869.1:229-249] [ath-miR869.2:240-260]

            ga   c         g     a  a   c          u                 c  g        ua       c       -       c       cuauaa       a             ---c  u   u 
gcccaccauaca  uuu cauacggua aagaa gu uca cuaucucaac ccaggauuggaccagua ua gcucauca  guuaagc acaaucc acgauuc ucaucag      aagcaaa ccuucauaucuau    cu guu c
||||||||||||  ||| ||||||||| ||||| || ||| |||||||||| ||||||||||||||||| || ||||||||  ||||||| ||||||| ||||||| |||||||      ||||||| |||||||||||||    || |||  
cggguggugugu  aaa guaugccau uucuu ca AGU GAUAGAGUUG GGUCUUAACUUGGUUAu au cgaguagu  caauucg uguuagg uguuagg aguaguc      uuuguuu ggaaguauagaua    ga caa u
            ac   a         a     -  C   U          U                 u  a        ca       u       g       a       ------       c             cucu  c   a 

>ath-MIR870 (-42.20)   [ath-miR870:65-85]

          -            a    a      ac    a 
gaucgaagaa caucaaauuaga ugug ugcaaa  uuag c
|||||||||| |||||||||||| |||| ||||||  ||||  
CUAGCUUCUU GUGGUUUAAUcu acac acguuu  aauc u
          U            a    a      ac    c 

>mmu-mir-181d (-27.60)   [mmu-miR-181d:7-29]

acaauuA         G UG          guga  ag 
       ACAUUCAUU U  UCGGUGGGUu    gg  g
       ||||||||| |  ||||||||||    ||   
       uguaaguag g  ggccacccag    cc  c
-ugucac         g --          ---a  ga 

>bta-let-7a-2 (-25.20)   [bta-let-7a:5-26]

   uU   G   U             uagaa ua a 
agg  GAG UAG AGGUUGUAUAGUU     u  c u
|||  ||| ||| |||||||||||||     |  | c
ucc  uuc auc uccgacaugucaa     a  g a
   -u   g   c             --uag gg a 

>bta-let-7a-3 (-34.40)   [bta-let-7a:4-25] [bta-let-7a*:52-72]

   U   GU                ---------        
ggg GAG  AGUAGGUUGUAUAGUU         uggggcu 
||| |||  ||||||||||||||||         |||||| c
ucC UUC  UCAUCUAACAUAUCaa         gucccgu 
   U   UG                uaggguauc        

>bta-let-7b (-41.90)   [bta-let-7b:6-27]

cgg  U                     ucaggguagugaug 
   gg GAGGUAGUAGGUUGUGUGGUU              u
   || |||||||||||||||||||||              u
   cc uuccgucauccaacauaucaa              g
---  -                     uagaaggcuccccc 

>bta-let-7c (-33.50)   [bta-let-7c:11-32]

  a      uU   G   U             ua  g ua a 
gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
|| ||||||  ||| ||| |||||||||||||  || |  | c
cg agguuc  uuc auc uccaacaugucaa  uu a  g c
  -      cu   g   u             --  g gg u 

>bta-let-7e (-37.80)   [bta-let-7e:8-28]

  c   cU   G                u  ----gga  a 
cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg c
|| |||  ||| |||||||||||||||| ||       ||  
gg ccc  uuc auccuccggcauauca cu       cc a
  a   cu   g                -  agaggaa  c 

>bta-mir-103-2 (-27.50)   [bta-miR-103:48-70]

uugug      --   u  u           ----    ua 
     cuuuca  gcu cu uacagugcugc    cuug  g
     ||||||  ||| || |||||||||||    ||||  c
     gaaAGU  CGG GA AUGUUACGACG    ggac  a
--caa      AU   -  C           Aacu    uu 

>bta-mir-125b-2 (-38.80)   [bta-miR-125b:13-34]

--ga   uu     UC  UG   C   A        - g   u 
    cuu  ccuag  CC  AGA CCU ACUUGUGA g uau u
    |||  |||||  ||  ||| ||| |||||||| | |||  
    gag  ggauc  gg  ucu gga ugaacacu c aug u
aggg   gc     ca  gu   c   c        a g   a 

>bta-mir-15a (-30.74)   [bta-miR-15a:14-34]

     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUg  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       c  cgucgugu  uaccggacgu  aa a
     auaaaaa uc        ua          gg  a 

>bta-mir-195 (-49.50)   [bta-miR-195:15-36]

a  uc     g  cU          -A          cu  gaa 
 gc  cccug cu  AGCAGCACAG  AAUAUUGGCA  gg   g
 ||  ||||| ||  ||||||||||  ||||||||||  ||    
 ug  gggac ga  ucgucguguc  uuauaaccgu  cc   a
g  gu     g  cc          gg          --  gaa 

>bta-mir-19a (-39.10)   [bta-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>bta-mir-19b (-38.42)   [bta-miR-19b:54-76]

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 

>bta-mir-204 (-40.56)   [bta-miR-204:23-44]

uuucuucau     ucg     U          A     U    gagaau 
         gugac   uggac UCCCUUUGUC UCCUA GCCU      a
         |||||   ||||| |||||||||| ||||| ||||      u
         uacug   acuug agggaaacgg agggu cgga      a
------cac     uua     c          a     -    ggaagu 

>bta-mir-331 (-38.92)   [bta-miR-331:61-81]

gaguuugguuuugu       u        u    u       au ccaga 
              uuggguu guucuagg augg cccaggg  c     u
              ||||||| |||||||| |||| |||||||  |     c
              aauccaa cAAGAUCC UAUC GGGUCCC  g     a
--------------       c        -    C       CG accaa 

>bta-mir-34a (-46.40)   [bta-miR-34a:22-43]

gg -    u   -  ug     uU        -   A          guga   a 
  c cagc gug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu    gua u
  | |||| ||| ||  |||||  |||||||| ||| ||||||||||    |||  
  g guug cac uc  gaaga  ccgucaua gaa cgacuaacga    cgu a
gg u    -   g  gu     uc        u   -          agga   a 

>bta-mir-365 (-35.40)   [bta-miR-365-5p:16-38] [bta-miR-365-3p:56-77]

acc      aa        AC           ----   -   uuu 
   gcaggg  aaugAGGG  UUUUGGGGGCA    GAU GUG   g
   ||||||  ||||||||  |||||||||||    ||| |||   c
   cguucu  uUAUUCCU  AAAAUCCCCGU    cua cac   a
--a      cg        -A           AAUa   u   cuu 

>bta-mir-374a (-41.80)   [bta-miR-374a:12-33]

     c   c                        u 
uacau ggc aUUAUAAUACAACCUGAUAAGUGu a
||||| ||| ||||||||||||||||||||||||  
augug cug uaauguuauguuggacuauucacg c
     u   u                        a 

>bta-mir-497 (-53.50)   [bta-miR-497:24-45]

cca  c    ----   g         - -----    G    C         U  --   ac 
   cc cagu    ccu cucccgccc C     AGCA CACA UGUGGUUUG Ac  ggc  u
   || ||||    ||| ||||||||| |     |||| |||| ||||||||| ||  |||   
   gg gucg    gga ggggguggg g     uugu gugu acaccaaac ug  ccg  g
---  a    ccac   -         a cgaga    g    c         c  ca   gu 

>bta-mir-660 (-28.10)   [bta-miR-660:16-37]

cugcuccu     c   -C    U      C    C   gaau 
        ucucc gUA  CCAU GCAUAU GGAG UGu    u
        ||||| |||  |||| |||||| |||| |||    c
        ggagg cau  ggua cgugua ccuc acg    u
-------g     a   ua    -      u    c   aaac 

>bta-mir-99b (-30.00)   [bta-miR-99b:7-28]

     cC         AC   C    C - -   c 
ggcac  ACCCGUAGA  CGA CUUG G g ggc u
|||||  |||||||||  ||| |||| | | |||  
cugug  ugggugucu  gcu gaac c c ccg u
     cc         gu   c    a a g   c 

>mmu-mir-743b (-29.00)   [mmu-miR-743b-5p:11-31] [mmu-miR-743b-3p:46-67]

--u  ag    g       AC       CA     uga 
   gc  ugcu UGUUCAG  UGGUGUC  UCAug   a
   ||  |||| |||||||  |||||||  |||||   a
   cg  augA AUAAGUC  ACUACAG  AGugu   u
acc  ga    G       GU       AA     uua 

>mmu-mir-871 (-40.30)   [mmu-miR-871:11-33]

--u   g   uc        UUA              a 
   gca ugc  UAUUCAGA   GUGCCAGUCAUGug a
   ||| |||  ||||||||   |||||||||||||| a
   cgu aug  auaggucu   cacggucaguauac u
acu   a   ua        uac              a 

>mmu-mir-879 (-38.30)   [mmu-miR-879:11-31] [mmu-miR-879*:45-66]

--      g   AG      AU    C        gga 
  uucuag ucc  AGGCUU  AGCU UAAGCCuu   u
  |||||| |||  ||||||  |||| ||||||||    
  gagguc aGG  UUCGAA  UCGG AUUCGgag   g
ca      g   CU      CU    U        aaa 

>mmu-mir-880 (-21.90)   [mmu-miR-880:47-68]

--   ac   aa        -uu   au    c  uuccu 
  ugc  ugc  uacucaga   gau  gagu ac     a
  |||  |||  ||||||||   |||  |||| ||      
  acg  aug  AUGAGUCU   CUA  CUCA ug     u
ac   ga   AG        CUC   -C    U  uacgu 

>mmu-mir-881 (-22.80)   [mmu-miR-881*:15-36] [mmu-miR-881:47-68]

--u   g   aa          -    A    C  AUCUu 
   gca uac  uauuCAGAGA GAUA CAGU AC     u
   ||| |||  |||||||||| |||| |||| ||      
   ugu aug  AUAAGUCUUU CUGU GUCA ug     u
acu   a   AG          U    -    A  aaauc 

>mmu-mir-882 (-22.10)   [mmu-miR-882:11-32]

--c      accA       G    CGC     Ug aau 
   agcagu    GGAGAGA UUAG   AUUAG  c   a
   ||||||    ||||||| ||||   |||||  |    
   ucgucg    ucuuuuu gguc   uaguc  g   g
uuc      guaa       g    -uu     cu auu 

>mmu-mir-883a (-39.20)   [mmu-miR-883a-5p:10-31] [mmu-miR-883a-3p:45-66]

--  ac              AA  A          uau 
  gc  uauaaUGCUGAGAG  GU GCAGUUACuu   u
  ||  ||||||||||||||  || ||||||||||    
  cg  auguUAUGACUCUC  CA CGUCAAUgaa   c
cu  ga              GA  A          uau 

>mmu-mir-883b (-28.00)   [mmu-miR-883b-5p:11-32] [mmu-miR-883b-3p:47-68]

-u  aa    u        AUGG  A     C    ugu 
  gc  ugca UACUGAGA    GU GCAGU Acuu   a
  ||  |||| ||||||||    || ||||| ||||    
  ug  augu AUGACUCU    CA CGUCA Ugag   c
cu  ga    U        -CUA  A     A    uau 

>mmu-mir-190b (-32.70)   [mmu-miR-190b:11-31]

--    u     U  -             G     -  aaa 
  ugcu cugug GA UAUGUUUGAUAUU GGUUg uu   u
  |||| ||||| || ||||||||||||| ||||| ||    
  auga gacac cu auacgaacuguaa ucaac aa   u
ga    c     u  c             g     c  gua 

>mmu-mir-874 (-37.10)   [mmu-miR-874:45-66]

--      cug   c   a  ca        a ag  a 
  uuagcc   cgg ccc cg  ccagggua g  ag c
  ||||||   ||| ||| ||  |||||||| |  || u
  ggucgg   GCC GGG GC  GGUCCCGU C  uc c
cg      ucA   A   A  CC        - cu  a 

>mmu-mir-876 (-31.20)   [mmu-miR-876-5p:11-32] [mmu-miR-876-3p:50-71]

ucac ug         U  C             au  aa 
    g  cuaUGGAUU CU UGUGAAUCACUAu  ca  u
    |  ||||||||| || |||||||||||||  ||  c
    c  gauACUUAA GA ACAUUUGGUGAUg  gu  u
acuu gu         U  A             gu  ga 

>mmu-mir-105 (-28.40)   [mmu-miR-105:11-33]

-----   auuu    CAA        AU  UUG G    c   u 
     ugc    uagC   GUGCUCAG  GC   U GUgg ugc u
     |||    ||||   ||||||||  ||   | |||| |||  
     aug    aucg   uacgaguu  cg   a cacc acg a
caucc   --gu    -ug        --  -ua g    -   u 

>mmu-mir-147 (-28.90)   [mmu-miR-147:48-69]

--  ug   c   ug   a            --------   u 
  ua  aau uag  gaa cauuucugcaca        aac a
  ||  ||| |||  ||| ||||||||||||        ||| g
  au  uua AUC  CUU GUAAAGGCGUGU        uug a
gg  gu   c   GU   C            Gaccguag   u 

>mmu-mir-18b (-23.30)   [mmu-miR-18b:11-33]

ucu       --U    U    C   UGCUGUUAGugaagc 
   cuugugu   AAGG GCAU UAG               a
   |||||||   |||| |||| |||               g
   ggacacg   uucc cgua auc               c
auc       cuc    c    a   ccgucaucuaacauu 

>mmu-mir-193b (-36.00)   [mmu-miR-193b:48-69]

-     -    u    gu    a    g  a  ag uug 
 ggccc agaa cggg  uuug gggc ag ug  u   u
 ||||| |||| ||||  |||| |||| || ||  |   g
 cuggg uuuU GCCC  AAAC CCCG UC Ac  a   u
a     g    C    UG    A    G  A  cu uuu 

>mmu-mir-220 (-29.80)   [mmu-miR-220:11-31]

uu  -    --c   A C  A      --        g    a    
  gu aggg   uCC C AC GUGUCA  GACACUUu ggug ggg 
  || ||||   ||| | || ||||||  |||||||| |||| || c
  ca uccu   agg g ug cguagu  uuguggaa ucac cca 
-g  c    cau   - c  g      ac        g    a    

>mmu-mir-297a-3 (-38.17)   [mmu-miR-297a:11-32] [mmu-miR-297a*:50-71]

--------        auAUGUA           ------------GCA            aa 
        cugugugu       UGUGUGCAUGU               UGUguguauaug  u
        ||||||||       |||||||||||               ||||||||||||   
        gacacaca       acacacguaca               ACAUACAUAUac  a
aguuaaaa        ------a           aacAUACCCAUACAC            au 

>mmu-mir-297a-4 (-39.80)   [mmu-miR-297a:11-32] [mmu-miR-297a*:50-71]

--c         A   A       ----------     CA            ag 
   uguguguau UGU UGUGUGC          AUGUG  UGUguguauaug  u
   ||||||||| ||| |||||||          |||||  ||||||||||||   
   acgcacaua aca acguacg          UACAC  ACAUACAUAUac  a
aaa         a   c       aacAUACCCA     --            au 

>mmu-mir-297a-5 (-38.80)   [mmu-miR-297a:11-32]

----c       au    A      --C      AU           ag 
     ugugugu  AUGU UGUGUG   AUGUGC  GUguguauaug  u
     |||||||  |||| ||||||   ||||||  |||||||||||   
     acacacg  uacg acauac   uacacg  cauacauauac  a
cccaa       --    a      cca      --           au 

>mmu-mir-297a-6 (-44.70)   [mmu-miR-297a:51-72]

--au ug    ug            a              a 
    g  caug  uguaugugcaug gugcaugugcaugc u
    |  ||||  |||||||||||| ||||||||||||||  
    u  guaU  ACGUGUACGUGU UAUGUAcgcgugug g
uacg gu    GU            G              u 

>mmu-mir-297c (-33.90)   [mmu-miR-297c:11-32] [mmu-miR-297c*:50-71]

----c       auA          CA    --------CA            aa 
     ugugugu   UGUAUGUGUG  UGUA          UGUguguauaug  u
     |||||||   ||||||||||  ||||          ||||||||||||   
     acacaca   acauacguac  acAU          ACAUACAUAUac  a
uaaaa       --a          aa    ACCCAUACAC            au 

>mmu-mir-327 (-17.00)   [mmu-miR-327:11-29]

---------    c   uaACUU      CAUGA    agu 
         ugcc uua      GAGGGG     GGAU   c
         |||| |||      ||||||     ||||    
         acgg agu      cucccu     ccug   a
acacguuac    u   -----u      -acaa    aug 

>mmu-mir-343 (-26.40)   [mmu-miR-343:46-65]

-----u     agag     --    c     uagcagagccc   g 
      gggau    ugggu  gugg ggggg           agg c
      |||||    |||||  |||| |||||           |||  
      uccuA    ACCCG  UACU CCCUC           Ucc a
cguacg     ---G     UG    U     -----------   a 

>mmu-mir-344-2 (-47.20)   [mmu-miR-344:49-71]

----uu     c         cc         uc        a 
      uuuac agucaggcu  uggcuagau  cagguacc a
      ||||| |||||||||  |||||||||  ||||||||  
      gaaUG UCAGUCCGA  ACCGAUCUA  GUccaugg c
aacguc     -         -A         --        u 

>mmu-mir-421 (-30.20)   [mmu-miR-421:45-67]

-  uu      -    uua            a   aaa 
 ca  guaggc cuca   aauguuuguuga uga   a
 ||  |||||| ||||   |||||||||||| |||   a
 gu  cgucCG GGGU   UUACAGACAACU Acu   u
u  cu      C    UAA            -   aag 

>mmu-mir-453 (-34.20)   [mmu-miR-453:51-74]

--agaa        ag         aagu   a    - ug   
      gaugcagg  ugcugugag    gcc uccc c  gu 
      ||||||||  |||||||||    ||| |||| |  | a
      uuACGUUC  GUGAUACUC    UGG Aggg g  uc 
aauuua        GA         -CGU   -    a gu   

>mmu-mir-465b-1 (-30.53)   [mmu-miR-465b-5p:11-32] [mmu-miR-465b-3p:48-69]

--u  aa   c          U   G      UGaugaa 
   gc  ugc cUAUUUAGAA GGU CUGAUC       a
   ||  ||| |||||||||| ||| ||||||       u
   cg  aug GAUGAAUCUU CCG GACUAG       a
auu  ga   A          U   G      uuaaaaa 

>mmu-mir-465b-2 (-30.53)   [mmu-miR-465b-5p:11-32] [mmu-miR-465b-3p:48-69]

--u  aa   c          U   G      UGaugaa 
   gc  ugc cUAUUUAGAA GGU CUGAUC       a
   ||  ||| |||||||||| ||| ||||||       u
   cg  aug GAUGAAUCUU CCG GACUAG       a
auu  ga   A          U   G      uuaaaaa 

>mmu-mir-465c-1 (-32.01)   [mmu-miR-465c-5p:11-32] [mmu-miR-465c-3p:50-71]

--u  aa   c          U   G      UGaugaau 
   gc  ugc cUAUUUAGAA GGC CUGAUC        a
   ||  ||| |||||||||| ||| ||||||        a
   cg  aug GAUGAAUCUU CCG GACUAG        a
auu  ga   A          U   G      uaaaaaaa 

>mmu-mir-465c-2 (-32.01)   [mmu-miR-465c-5p:11-32] [mmu-miR-465c-3p:50-71]

--u  aa   c          U   G      UGaugaau 
   gc  ugc cUAUUUAGAA GGC CUGAUC        a
   ||  ||| |||||||||| ||| ||||||        a
   cg  aug GAUGAAUCUU CCG GACUAG        a
auu  ga   A          U   G      uaaaaaaa 

>mmu-mir-466b-1 (-33.70)   [mmu-miR-466b-5p:11-32] [mmu-miR-466b-3p:50-72]

--u         -G          AC     C       aa 
   guauguguu  AUGUGUGUGU  AUGUA AUGugug  u
   |||||||||  ||||||||||  ||||| |||||||  a
   uauacacAG  UACACACGCA  UACAU Uacauau  u
gag         AA          CA     A       ag 

>mmu-mir-466b-2 (-29.62)   [mmu-miR-466b-5p:11-32] [mmu-miR-466b-3p:50-72]

--u         -G          AC     C    cugaa 
   guauguguu  AUGUGUGUGU  AUGUA AUGu     u
   |||||||||  ||||||||||  ||||| ||||     a
   uauacacAG  UACACACGCA  UACAU Uaca     u
gag         AA          CA     A    uauag 

>mmu-mir-466b-3 (-32.40)   [mmu-miR-466b-5p:11-32] [mmu-miR-466b-3-3p:50-72]

-          -G          AC     CA      aa 
 uauauguguu  AUGUGUGUGU  AUGUA  UGugug  u
 ||||||||||  ||||||||||  |||||  ||||||  a
 guauacacAG  UACACACGCA  UACAU  acauau  u
a          AA          CA     AA      ag 

>mmu-mir-466c (-34.60)   [mmu-miR-466c-5p:12-33] [mmu-miR-466c-3p:51-73]

--g          -G           C     CA      aau 
   uauauguguu  AUGUGUGUGUG AUGUA  UAugug   a
   ||||||||||  ||||||||||| |||||  ||||||   u
   guauacacAG  UACACACGCAC UACAU  AUacau   g
cga          AA           A     --      aua 

>mmu-mir-466e (-30.00)   [mmu-miR-466e-5p:12-33] [mmu-miR-466e-3p:51-73]

--gu         -G          AC     CA      aau 
    guauguguu  AUGUGUGUGU  AUGUA  UAugug   a
    |||||||||  ||||||||||  |||||  ||||||   u
    uauacacAG  UACACACGCA  UACAU  AUacau   g
cgag         AA          CA     --      aua 

>mmu-mir-466f-1 (-42.80)   [mmu-miR-466f-5p:11-32] [mmu-miR-466f-3p:55-75]

--------------         u  C         C     C        au 
              caugugugu UA GUGUGUGUG AUGUG AUGugugu  a
              ||||||||| || ||||||||| ||||| ||||||||   
              guacaCACA AU CACACACAC UACac uacauaua  u
uauacacacacaac         C  A         A     a        ag 

>mmu-mir-466f-2 (-42.40)   [mmu-miR-466f-5p:11-32] [mmu-miR-466f-3p:55-75]

-aa       -       U     C     --CA           gaa 
   ugugugu uUACGUG GUGUG AUGUG    UGuguguauau   u
   ||||||| ||||||| ||||| |||||    |||||||||||    
   acacaca aauguac CACAC UACAC    ACAUACauaug   a
cac       c       u     A     ACAC           uau 

>mmu-mir-466f-3 (-43.90)   [mmu-miR-466f-5p:11-32] [mmu-miR-466f-3p:55-75]

---ca        UA          C     --CA           gaa 
     uguguguu  CGUGUGUGUG AUGUG    UGuguguauau   u
     ||||||||  |||||||||| |||||    |||||||||||    
     acacacaa  gcacgCACAC UACAC    ACAUACauaug   a
cacac        -c          A     ACAC           uau 

>mmu-mir-466g (-42.40)   [mmu-miR-466g:48-68]

---      uu                ga       a  ug 
   uguguu  cgugugugugcaugug  uguaugu ua  a
   ||||||  ||||||||||||||||  ||||||| ||   
   acacgg  guACACACACGUACAC  ACAUAua gu  u
cac      -c                AG       c  uu 

>mmu-mir-466h (-34.22)   [mmu-miR-466h:11-32]

--ugua            CA     UU         ugaau 
      uauuugUGUGUG  UGUGC  GUGUGUAug     a
      ||||||||||||  |||||  |||||||||     u
      guaaacacacac  acacg  cacgcauac     a
acgaac            ac     --         uauau 

>mmu-mir-467c (-29.36)   [mmu-miR-467c:11-32]

-  -   g     ----AA       CA      --         auuuua 
 cc uuu ugcaU      GUGCGUG  UGUAUA  UGUGuguau      u
 || ||| |||||      |||||||  ||||||  |||||||||      g
 gg aag gcgua      cacguac  acauau  acacacaua      c
c  u   a     cagaca       ac      cc         cauaua 

>mmu-mir-467d (-33.10)   [mmu-miR-467d:11-32] [mmu-miR-467d*:47-68]

--c          --------AA   C C C             ua 
   cugugugcaU          GUG G G AUGUAUAUGCGug  u
   ||||||||||          ||| | | |||||||||||||  a
   gacacacgua          CAC C C UACAUAUAcguau  u
aca          cacaCACAUC   A A A             uu 

>mmu-mir-493 (-45.09)   [mmu-miR-493:51-73]

-c  -        u            -        cauuuuu 
  gc cagggccu guacaugguagg cuuucauu       u
  || |||||||| |||||||||||| ||||||||        
  cg gucccGGA CGUGUGUCAUCC GGAAGUgg       g
ac  u        C            U        cuuacac 

>mmu-mir-504 (-44.30)   [mmu-miR-504:11-32]

-uc    -            G     A    -A  u   a 
   cugu ugggAGACCCUG UCUGC CUCU  UC gua a
   |||| |||||||||||| ||||| ||||  || |||  
   gaca acccuuugggac ggacg gagg  ag cau c
gga    u            g     a    ga  u   u 

>mmu-mir-509 (-19.40)   [mmu-miR-509-5p:10-31] [mmu-miR-509-3p:45-65]

--   guu     CUC     U   G       gcaua 
  gug   cuuUA   CAGAA GUG CAAUCAU     a
  |||   |||||   ||||| ||| |||||||      
  cac   gaGGU   GUCUU UAC GUUAGUg     u
ua   aau     AAU     -   A       uaaau 

>mmu-mir-568 (-31.10)   [mmu-miR-568:11-30]

-    -      A      AAU           uc        u 
 acac uauauu UGUAUA   GUAUACACACu  uauauaug c
 |||| |||||| ||||||   |||||||||||  ||||||||  
 ugug auaugg acauau   uaugugugugg  guauauac c
g    g      -      ---           -c        a 

>mmu-mir-574 (-55.70)   [mmu-miR-574-5p:11-33] [mmu-miR-574-3p:47-68]

--            A U                 U u gc 
  ugcgggcgugUG G GUGUGUGUGUGAGUGUG g c  u
  |||||||||||| | ||||||||||||||||| | |  c
  acgcccgcACAC C CACACACGUACUCGCAC c g  c
gc            - -                 - u aa 

>mmu-mir-590 (-28.50)   [mmu-miR-590-5p:11-32] [mmu-miR-590-3p:51-71]

--       a  G       U       G     ua   u 
  agucaga au AGCUUAU CAUAAAA UGCAG  ugg g
  ||||||| || ||||||| ||||||| |||||  ||| a
  uuagucu UG UCGAAUA GUAUUUU AUguc  acu a
ag       c  A       U       A     ua   g 

>mmu-mir-654 (-23.90)   [mmu-miR-654-5p:18-39] [mmu-miR-654-3p:53-74]

------     uaagu  gaa      AAGCU     A      Uguuu 
      cucgg     gg   gaUGGU     GCAGA CAUGUG     c
      |||||     ||   ||||||     ||||| ||||||      
      ggguU     CC   CUACCA     CGUCU GUAUac     u
gucucu     ----U  --A      ---GU     -      uguac 

>mmu-mir-92b (-52.92)   [mmu-miR-92b:52-73]

---  u    g     ga       u            uucuu 
   gg gggc ggagg  cgggacg ggugcaguguug     u
   || |||| |||||  ||||||| ||||||||||||     c
   cc cccg CCUCC  GCCCUGC UCACGUUAUaac     c
gcu  -    g     -G       -            cgucc 

>hsa-mir-298 (-32.10)   [hsa-miR-298:11-34]

---   gg    c      --      GA     UC -    g uu 
   uca  ucuu AGCAGA  AGCAGG  GGUUC  C CAgu g  u
   |||  |||| ||||||  ||||||  |||||  | |||| |  u
   agu  agga ucguuu  ucgucc  ucaag  g guca u  c
ucg   -g    c      cg      ga     ga u    g uc 

>hsa-mir-891a (-35.22)   [hsa-miR-891a:11-32]

c   --a     UG        C  A        uucag 
 cuu   auccu  CAACGAAC UG GCCACUGA     u
 |||   |||||  |||||||| || ||||||||     a
 gaa   uggga  guuguuug ac cggugacu     a
a   aac     gu        u  a        cauaa 

>hsa-mir-300 (-23.80)   [hsa-miR-300:52-73]

--    a   ga      guaa     ---cacg    u  uu 
  ugcu cuu  agagag    uccuu       cauu gc  u
  |||| |||  ||||||    |||||       |||| ||  a
  acga ggg  UCUCUC    GGGAA       guaa cg  c
aa    g   UC      AGAC     CAUAUua    -  uu 

>hsa-mir-886 (-35.10)   [hsa-miR-886-5p:11-33] [hsa-miR-886-3p:90-110]

--cacuccuaccC       AGUU   U AA    -  a -cu     u  - ------    uuu 
             GGGUCGG    AGC C  GCGG uu c   ccuca gc c      ggac   c
             |||||||    ||| |  |||| || |   ||||| || |      ||||   u
             CCCAGUC    UCG G  CGCc ag g   ggggu cg g      ccug   a
aauaacguauuUU       --AU   U GG    c  a cuu     -  u ucucua    ucu 

>hsa-mir-892a (-28.10)   [hsa-miR-892a:45-65]

gcagu         -----       u  -    c  uuac 
     gccuuacuc     agaaagg gc cagu ac    a
     |||||||||     ||||||| || |||| ||    c
     cggaaugaG     UCUUUCC UG GUCA ug    u
---cu         AUGCG       -  U    C  uaca 

>hsa-mir-220b (-38.00)   [hsa-miR-220b:11-31]

u   -   - c   ACC        -   -      g    a    
 ugu agg g uCC   ACCGUGUC UGA CACUUu ggcg ggg 
 ||| ||| | |||   |||||||| ||| |||||| |||| || c
 gcg ucc c agg   uggcguag acu guggaa ucgc cca 
g   c   u a   guc        u   u      g    a    

>hsa-mir-509-2 (-37.30)   [hsa-miR-509-5p:20-40] [hsa-miR-509-3p:55-76]

caugc   -   ug    c   - UG     A   G       --g  u 
     ugu gug  guac cUA C  CAGAC GUG CAAUCAu   ua a
     ||| |||  |||| ||| |  ||||| ||| |||||||   ||  
     aca uac  caug GAU G  GUCUG CAU GUUAGUa   au a
----c   g   gu    a   G GU     -   G       aaa  u 

>hsa-mir-450b (-23.50)   [hsa-miR-450b-5p:11-32] [hsa-miR-450b-3p:48-69]

--          UUU     U   U    G    ug aa 
  gcagaauuau   UGCAA AUG UCCU AAUA  u  u
  ||||||||||   ||||| ||| |||| ||||  |  a
  uguuuugAUA   ACGUU UAC AGGG UUau  g  u
ua          CCU     U   U    -    gu aa 

>hsa-mir-874 (-37.20)   [hsa-miR-874:47-68]

--      cug   c   a  ca        a   -a a 
  uuagcc   cgg ccc cg  ccagggua gag  g c
  ||||||   ||| ||| ||  |||||||| |||  | u
  ggucgg   GCC GGG GC  GGUCCCGU cuu  c c
cg      ucA   A   A  CC        C   cg u 

>hsa-mir-890 (-29.10)   [hsa-miR-890:11-31]

--   ag   c     UG      C UC      uuag 
  gga  ugc cUACU  GAAAGG A  AGUUGc    a
  |||  ||| |||||  |||||| |  ||||||    u
  ucu  aug gauga  cuuucc u  ucaaug    u
au   ga   a     gu      c ua      uaca 

>hsa-mir-891b (-24.02)   [hsa-miR-891b:11-32]

c   --a     U     UU  C  A        uucag 
 cuu   auccu GCAAC  AC UG GUCAUUGA     u
 |||   ||||| |||||  || || ||||||||     a
 gaa   uggga uguug  ug ac cgguaacu     a
a   aac     u     uu  u  a        uacaa 

>hsa-mir-220c (-24.90)   [hsa-miR-220c:11-32]

-----------cacugggaccACAC        U   AA  CUc  u 
                         AGGGCUGU GUG  GA   ag g
                         |||||||| |||  ||   ||  
                         uuccgaca cac  cu   uc a
gacgggacucgguccgggacacgac        -   cc  -ac  g 

>hsa-mir-888 (-31.90)   [hsa-miR-888:11-31] [hsa-miR-888*:46-67]

--   ag g  c        A  C          uuag 
  ggc  u cu UACUCAAA AG UGUCAGUCAc    a
  |||  | || |||||||| || ||||||||||    u
  ucg  a gA GUGGGUUU UC ACAGUCAGug    u
ac   ga g  A        C  C          uaca 

>hsa-mir-892b (-35.90)   [hsa-miR-892b:46-67]

--u  aa   c             u    uuuau  a   u 
   gc  ugc cuacucagaaagg gcca     gu gau u
   ||  ||| ||||||||||||| ||||     || ||| u
   cg  acg GAUGGGUCUUUCC CGGU     CA Cug a
acu  ga   A             U    -----  -   u 

>hsa-mir-541 (-29.30)   [hsa-miR-541*:10-34] [hsa-miR-541:54-75]

-   -u     AAA        C    G UC      caaa      
 acg  caggg   GGAUUCUG UGUC G  CCACUc    guuca 
 |||  |||||   |||||||| |||| |  ||||||    |||| c
 ugu  gucUC   UCUAAGAC ACGG U  GGUggg    uaaga 
g   uc     AGG        -    G --      ----      

>hsa-mir-889 (-24.40)   [hsa-miR-889:49-69]

--     u   g     c      uagua     -  uau 
  gugcu aaa aaugg uguccg     ugguc uc   a
  ||||| ||| ||||| ||||||     ||||| ||   u
  uauga uuU UUACC ACAGGC     AUUag ag   u
cc     u   G     A      -UAUA     u  uau 

>hsa-mir-875 (-32.00)   [hsa-miR-875-5p:11-32] [hsa-miR-875-3p:45-65]

--      gu  UAU        U  A       uucu 
  uuagug  ac   ACCUCAGU UU UCAGGUG    u
  ||||||  ||   |||||||| || |||||||     
  agucac  uG   UGGAGUCA AA GGUCCac    a
ca      uc  UGU        C  A       uaaa 

>hsa-mir-876 (-42.70)   [hsa-miR-876-5p:11-32] [hsa-miR-876-3p:50-71]

u    ug         U                aucuaa  u 
 gaag  cugUGGAUU CUUUGUGAAUCACCAu      gc a
 ||||  ||||||||| ||||||||||||||||      ||  
 cuuc  gauACUUAA GAAACAUUUGGUGGUg      ug a
a    gu         U                -----g  u 

>hsa-mir-708 (-44.10)   [hsa-miR-708:11-33] [hsa-miR-708*:57-78]

-aa        A           A     C  GGg  aa   ac 
   cugcccuc AGGAGCUUACA UCUAG UG   gu  aug  u
   |||||||| ||||||||||| ||||| ||   ||  |||  u
   gacgggaG UCUUCGAGUGU AGAUC AC   ca  uac  g
agg        A           C     A  --a  ag   ac 

>hsa-mir-147b (-28.50)   [hsa-miR-147b:49-70]

--  u    c   ug   a            aacuagauu      
  ua aaau uag  gaa cauuucugcaca         cugga 
  || |||| |||  ||| ||||||||||||         |||| c
  au uuua AUC  CUU GUAAAGGCGUGU         Gacca 
gg  u    c   GU   C            ---------      

>hsa-mir-190b (-32.60)   [hsa-miR-190b:11-31]

-    u     -U               G     -   aa 
 ugcu cugug  GAUAUGUUUGAUAUU GGUUg uuu  u
 |||| |||||  ||||||||||||||| ||||| |||   
 acga gacau  uuauacaaacuguaa ucaac aag  u
g    c     uc               a     c   ga 

>mmu-mir-466d (-46.60)   [mmu-miR-466d-5p:11-32] [mmu-miR-466d-3p:51-71]

--ca       u            - -    --A A            aa 
    ugugugu UGUGUGUGCGUA C AUGU   C UGuguguauaug  u
    ||||||| |||||||||||| | ||||   | ||||||||||||   
    acacaca acacgcacgcau G UACA   G ACAUACAUAUac  a
ggac       c            a A    CAC C            au 

>mmu-mir-449b (-30.90)   [mmu-miR-449b:11-30]

---   cuc    A     U  U   A C       guug  u 
   aga   gggu GGCAG GU GUU G UGGCugc    gg c
   |||   |||| ||||| || ||| | |||||||    || a
   ucu   uuca ccguc ca cga c accgacg    cc g
cgg   ucc    -     c  u   - -       ---a  g 

>mmu-mir-878 (-29.50)   [mmu-miR-878-5p:11-32] [mmu-miR-878-3p:47-68]

--u  aa g           -   A     A A   guga 
   gc  u cuuUAUCUAGU UGG UGUCA G CAc    a
   ||  | ||||||||||| ||| ||||| | |||    a
   cg  a gAGAUGGGUCA ACC ACAGU C Gug    c
acu  gg g           C   -     A -   aauu 

>mmu-mir-872 (-31.49)   [mmu-miR-872:11-31] [mmu-miR-872*:50-71]

--    u     A        U  --         accucau 
  aacu guuag AGGUUACU GU  UAGUUCAGG       u
  |||| ||||| |||||||| ||  |||||||||        
  uugg caaUC UCCGAUGA CG  AUCAAGUcc       a
ua    u     C        -  UU         gucuuuc 

>mmu-mir-873 (-34.30)   [mmu-miR-873:11-31]

--   u ca   G A         G        a  ga 
  gug g  uuu C GGAACUUGU AGUCUCCU uu  a
  ||| |  ||| | ||||||||| |||||||| ||  a
  cac c  aag g ccuugaaca ucagagga ag  a
aa   c ac   g c         g        c  au 

>mmu-mir-875 (-28.70)   [mmu-miR-875-5p:11-32] [mmu-miR-875-3p:46-66]

---  u    u  U   -       U  A       uuca 
   uc gugg ac AUA CCUCAGU UU UCAGGUG    u
   || |||| || ||| ||||||| || |||||||    u
   ag cacu uG UAU GGAGUCA AA AGUCCac    a
acg  u    u  -   C       U  A       uaaa 

>mmu-mir-208b (-31.00)   [mmu-miR-208b:46-67]

--c        g          c   cg        cu 
   cucucagg aagcuuuuug ucg  uuauguuu  c
   |||||||| |||||||||| |||  ||||||||  a
   gggagucU UUUGGAAAAC AGC  AAUAuaag  u
guc        G          A   AG        cc 

>mmu-mir-877 (-38.70)   [mmu-miR-877:1-20] [mmu-miR-877*:63-84]

-GUA      AU  C C          agguaggccuugcggg 
    GAGGAG  GG G AGGGgacaca                u
    ||||||  || | ||||||||||                 
    CUCCUC  CC C UCUCCUGUgu                c
gACC      --  U U          acagguucccaggugu 

>mmu-mir-511 (-27.90)   [mmu-miR-511:11-31]

--   a    -  A  C        CU   C   g     a 
  gau ccca cc UG CUUUUGCU  GCA UCA uaaau a
  ||| |||| || || ||||||||  ||| ||| |||||  
  cua gggu gg ac gaaaacga  ugu agu guuua u
ac   g    a  -  a        ug   a   -     a 

>mmu-mir-544 (-30.52)   [mmu-miR-544:47-68]

---   cua    u           -         gauug 
   cac   ggga cuuguuaaaaa gcagagucu     a
   |||   |||| ||||||||||| |||||||||     g
   gug   cuCU GAACGAUUUUU CGUCUUAga     g
gua   -aa    C           A         accgg 

>mmu-mir-598 (-33.30)   [mmu-miR-598:48-69]

-- c     c           c      ---u  g    ga 
  g ugaug uggcggugaug cgaugg    gc agcu  a
  | ||||| ||||||||||| ||||||    || ||||  a
  c acuac AUUGCUACUGC GCUACU    cg ucgg  a
ua u     u           U      GCAU  -    gu 

>mmu-mir-653 (-35.80)   [mmu-miR-653:11-31]

--       u              U     C     caa   c 
  cauucuu caGUGUUGAAACAA CUCUA UGaac   gcu c
  ||||||| |||||||||||||| ||||| |||||   |||  
  gugagga guuaugacuuuguu gaggu acuug   cga a
uc       c              u     c     -ag   a 

>hsa-mir-744 (-38.90)   [hsa-miR-744:11-32] [hsa-miR-744*:68-89]

--     c     GC    C   -   U       gucuuacugaagguu 
  uuggg aaggU  GGGG UAG GGC AACAGCA               u
  ||||| |||||  |||| ||| ||| |||||||               c
  ggcuc uUCCA  CUCC AUC CCG UUGUCgu               c
cu     a     -A    A   A   -       acacgcaccaaaggu 

>hsa-mir-885 (-44.50)   [hsa-miR-885-5p:11-32] [hsa-miR-885-3p:43-64]

--   ca    c           A  -         cu 
  ccg  cucu UCCAUUACACU CC CUGCCUCUu  c
  |||  |||| ||||||||||| || |||||||||   
  ggc  gagA AGGUGAUGUGG GG GACGGAgag  c
ug   ac    U           -  C         ua 

>hsa-mir-877 (-39.50)   [hsa-miR-877:1-20] [hsa-miR-877*:66-86]

-GUA      AU  C C          g caaagac         c 
    GAGGAG  GG G AGGGgacacg g       uuggggguu c
    ||||||  || | |||||||||| |       ||||||||| u
    CUCCUC  CC C UCUCCUgugu c       gacucccag g
GACC      --  U U          g ------a         g 

>hsa-mir-887 (-40.90)   [hsa-miR-887:48-69]

--       u        --  -      ag    ug auu 
  gugcaga ccuuggga  gc ccuguu  acuc  g   u
  ||||||| ||||||||  || ||||||  ||||  |   u
  cacguuu GGAGCCCU  CG GGGCAA  UGag  u   a
ga       c        AC  C      -G    gu cac 

>hsa-mir-665 (-34.30)   [hsa-miR-665:43-62]

-  u   -c          u      -acc  g  c 
 uc ccu  gaggggucuc gccucu    ca ga u
 || |||  |||||||||| ||||||    || || c
 gg gga  cUCCCCGGAG CGGAGG    gu cu u
c  c   ca          U      ACCA  a  u 

>hsa-mir-873 (-31.10)   [hsa-miR-873:11-31]

--   u ca   G A      UG G        a  ga 
  gug g  uuu C GGAACU  U AGUCUCCU uu  a
  ||| |  ||| | ||||||  | |||||||| ||  a
  cac c  aag g ccuuga  a ucagagga aa  a
aa   c ac   g c      gu g        c  gu 

>hsa-mir-543 (-25.50)   [hsa-miR-543:47-68]

--    u  u       u  -     ---u    u    uu 
  uacu aa gagaagu gc ccgug    uuuu ucgc  u
  |||| || ||||||| || |||||    |||| ||||  a
  auga uu UUCUUCA CG GGCGC    AAAg agug  u
cu    c  u       -  U     UUAC    c    uu 

>hsa-mir-374b (-41.40)   [hsa-miR-374b:11-32] [hsa-miR-374b*:41-62]

--  u    ug AU                     c 
  ac cgga  g  AUAAUACAACCUGCUAAGUGu c
  || ||||  |  |||||||||||||||||||||  
  ug gccu  U  UAUUAUGUUGGACGAUUCacg u
uc  u    gU AC                     a 

>hsa-mir-760 (-41.60)   [hsa-miR-760:49-68]

--g   cg    c    u   ucca        c    acc 
   gcg  ucgc cccc cag    ccagagcc ggau   u
   |||  |||| |||| |||    |||||||| ||||   c
   cgu  agcg GGGG GUC    GGUCUCGG Cuua   a
caa   aa    A    U   --UG        -    aag 

>hsa-mir-301b (-33.00)   [hsa-miR-301b:45-67]

---g  g        c      ---g        a  gug u 
    cc caggugcu ugacga    guugcacu cu   c c
    || |||||||| ||||||    |||||||| ||   | u
    gg gucuaCGA ACUGUU    UAACGUGA ga   g g
acca  -        A      AUAG        C  --a a 

>hsa-mir-216b (-32.50)   [hsa-miR-216b:11-32]

--g       gaA         A  --CAAA      g  ac 
   cagacug   AAUCUCUGC GG      UGUGAu uc  u
   |||||||   ||||||||| ||      |||||| ||   
   gucugac   uuagagaug cc      acacua ag  g
aca       auc         c  auucac      a  ga 

>hsa-mir-208b (-31.30)   [hsa-miR-208b:46-67]

--c        g          c   aa        cu 
   cucucagg aagcuuuuug ucg  uuauguuu  g
   |||||||| |||||||||| |||  ||||||||  a
   gggagucU UUUGGAAAAC AGC  AAUAuaag  u
gac        G          A   AG        cc 

>mtr-MIR156b (-62.90)   [mtr-miR156b:6-25]

--  a         -                    acu    u u    u 
  gg ggUGACAGA AGAGAGUGAGCACacauggu   uucg g auga g
  || ||||||||| ||||||||||||||||||||   |||| | ||||  
  cc ccacugucu ucucucacucguguguaucg   aagc c uacu u
ua  -         a                    ---    u u    u 

>mtr-MIR167 (-106.40)   [mtr-miR167:6-26]

-aaa     A   -  -             guuu      acaa           ---agaa   acua    -  u  u         a             gauuacucucuuucacaaaauagguauuaaagugccaugauuuuugcauuacuaaugggaaa 
    agUGA GCU GC CAGCAUGAUCUAg    gguuau    uaguaguauug       gga    uaua cg uu uuuuuuacu uaccacaaaaaaa                                                              a
    ||||| ||| || |||||||||||||    ||||||    |||||||||||       |||    |||| || || ||||||||| |||||||||||||                                                              u
    ucacu cga cg gucguacuggauc    ccaaua    aucgucaugau       ccu    auau gc ga aaaaaauga augguguuuuuuu                                                              a
uucc     c   u  u             aguc      --cg           gaacaua   ----    c  c  u         c             auggugguuuuggauaaaggauagauauauuuuuuuuucacucuuuaagccacagguuuuaa 

>mtr-MIR164a (-40.96)   [mtr-miR164a:6-26]

-  u          CA             uccucuuuc    --u    cu 
 cu guUGGAGAAG  GGGCACGUGCAaa         ugau   cauu  c
 || ||||||||||  |||||||||||||         ||||   ||||  u
 ga caaccucuuc  cucgugcacguuu         acua   guaa  c
g  u          cc             ---ucuaua    uac    ua 

>mtr-MIR160b (-48.70)   [mtr-miR160b:6-26]

-gu      C       CU         a  ug   c       a 
   augUGC UGGCUCC  GUAUGCCAu ua  aag ucauuga a
   |||||| |||||||  ||||||||| ||  ||| |||||||  
   uauacg accgagg  uaugcggua gu  uuc aguaacu a
ccu      a       ag         g  gu   c       a 

>mtr-MIR166b (-64.40)   [mtr-miR166b:145-165]

    a        uu      cu         aacua  -    uu  uuug        a    uu   u      cu          
guug ugggaaug  guuugg  cgagguaau     ac ucaa  uc    ucuuugaa gcuu  cuu guuuca  cuuuuugau 
|||| ||||||||  ||||||  |||||||||     || ||||  ||    |||||||| ||||  ||| ||||||  |||||||| u
caac AUCCUUAC  CGGACC  GCUcuauua     ug aguu  ag    ggaaauuu cgag  gaa caaagu  gaaagauuc 
    c        UU      AG         --gug  u    uu  -uuu        -    -u   u      -u          

>mtr-MIR160c (-53.60)   [mtr-miR160c:6-26]

-uc      C         GA      uc  ag   c       a 
   gcuUGC UGGCUCCCU  AUGCCA  ug  aag uugucaa a
   |||||| |||||||||  ||||||  ||  ||| ||||||| c
   cggacg accgaggga  uacggu  ac  uuc aacgguu g
cgu      u         ag      uu  cu   c       a 

>mtr-MIR169c (-40.00)   [mtr-miR169c:6-26]

g    C         UG           g  --  --a     a 
 aaug AGCCAAGGG  AUUUGCCGGca au  au   uauga u
 |||| |||||||||  ||||||||||| ||  ||   |||||  
 uuac ucgguucuc  ugaacggcugu ua  ua   auacu a
-    a         cu           g  cg  gag     u 

>mtr-MIR169d (-102.30)   [mtr-miR169d:6-26]

agaugAAGCCAAGGAUGACUUGCCGGuauaauaguaauuugccacaaaucuagauagcuauua  u          g            aa  a        --c g             u   -u   uua 
                                                               gc auguuuggau ggcggugagauu  ca aauuacag   a cauugugauuuug uga  gcu   a
                                                               || |||||||||| ||||||||||||  || ||||||||   | ||||||||||||| |||  |||   a
                                                               cg uauaaaucua cugccacucuaa  gu uuaauguc   u gugacauuaaaac auu  uga   g
-----------------------uuauaucggcuuccuacuggacggccuuuacuuugauuua  -          a            ga  a        acu g             u   uu   ugu 

>mtr-MIR169e (-47.72)   [mtr-miR169e:6-26]

ga    G    -                -ua    aguuuguc         a 
  aauG AGCC AAGGAUGACUUGCCGg   uauu        gcuaaagcu a
  |||| |||| ||||||||||||||||   ||||        |||||||||  
  uuau ucgg uuccuacuggacggcc   augg        ugauuucga c
--    a    c                cuc    ---guugu         u 

>mtr-MIR171b (-47.00)   [mtr-miR171b:69-89]

                 c       ugaa         -   aaaa 
agcaagguauuggcgcg cucaauu    uacauggcu aua    u
||||||||||||||||| |||||||    ||||||||| |||    g
uuguuCUAUAACUGCGC GAGUUAG    auguaccga uau    c
                 C       Uuug         c   acua 

>mtr-MIR166c (-44.00)   [mtr-miR166c:80-100]

gc  a      c c       cu      augcucagaucuguuuugaucu 
  ug gaggaa g agucugg  cgagga                      g
  || |||||| | |||||||  ||||||                      a
  ac CUCCUU C UCGGACC  GCUcuu                      u
cu  c      A U       AG      aauuaaucuauacuuguauagc 

>mtr-MIR166d (-51.70)   [mtr-miR166d:66-86]

g        a   uu         a       --       uu  u 
 uugagggg aug  gccuggcuc aggcuuu  ucauagu  ga c
 |||||||| |||  ||||||||| |||||||  |||||||  ||  
 aacuCCCC UAC  CGGACCGGG Uucggaa  aguauca  cu u
a        C   UU         C       uu       -u  a 

>mtr-MIR169f (-44.00)   [mtr-miR169f:6-26]

uuuau     A      A       A     -    cauuu   uuaauu      uua   ug -auau    u 
     AAGCC AGGAUG CUUGCCU gcuaa aaac     aca      ggggac   auu  u     guua g
     ||||| |||||| ||||||| ||||| ||||     |||      ||||||   |||  |     ||||  
     uucgg uccuau ggacgga cgauu uuug     ugu      ucccug   uga  a     uagu u
aguuu     a      -       -     a    --auu   ------      -ua   gu guagc    c 

>mtr-MIR156c (-54.40)   [mtr-miR156c:6-25]

--  u         -              c     guu   uu   c  uu 
  gg ggUGACAGA AGAGAGUGAGCACa auggu   uuc  gca ga  a
  || ||||||||| |||||||||||||| |||||   |||  ||| ||  u
  cc ccacugucu ucucucauucgugu uaucg   aag  cgu cu  g
ca  -         a              a     ---   uu   c  uu 

>mtr-MIR156d (-40.10)   [mtr-miR156d:6-25]

-   a         -  -          a    ca -u       g 
 gaa uUGACAGAA GA GAGUGAGCAC uaga  c  cgguaua a
 ||| ||||||||| || |||||||||| ||||  |  |||||||  
 cuu aacugucuu cu cucacucgug guuu  g  gcuauau u
c   a         u  a          c    cc uu       g 

>mtr-MIR390 (-40.22)   [mtr-miR390:6-26]

    u          G         Cau    u   -u  -uuuuuu  g 
cugu AAGCUCAGGA GGAUAGCGC   agaa guc  uc       ug u
|||| |||||||||| |||||||||   |||| |||  ||       ||  
ggua uuugaguccu ccuaucgcg   ucuu uag  ag       ac u
    c          a         uuc    c   uu  uuauuuu  c 

>mtr-MIR399f (-43.30)   [mtr-miR399f:79-99]

--uuaca   ug   u    a         a  uagu     ---u    ua     
       ggg  agu cucc uuggcaggu gc    cacua    auga  ugca 
       |||  ||| |||| ||||||||| ||    |||||    ||||  ||| u
       CCC  UUA GAGG AACCGUcua cg    gugau    uacu  acgu 
uuagcGA   GU   -    A         a  ---u     ucuc    ua     

>mtr-MIR399g (-52.00)   [mtr-miR399g:79-99]

--uuaca     ugu               agccauaugcuaugauaugcau 
       gggca   ucuccuuuggcaggu                      u
       |||||   |||||||||||||||                      g
       CCCGU   AGAGGAAACCGUcca                      c
uuaacGA     -UU               augugugaguuucucauaccaa 

>mtr-MIR399h (-38.60)   [mtr-miR399h:65-85]

    a   a          a        -ac      gaaa  uug 
aaug uag gcaaaucucu uuggcaga   gaagua    gc   g
|||| ||| |||||||||| ||||||||   ||||||    ||    
uuac GUC CGUUUAGAGG AACCGUuu   cuucgu    cg   a
    c   C          A        ggu      ---a  uac 

>mtr-MIR399i (-32.10)   [mtr-miR399i:65-85]

    a   a          a  a     -ac      gaaa  uug 
aaug uag gcaaaucucu uu gcaga   gaagua    gc   g
|||| ||| |||||||||| || |||||   ||||||    ||    
uuac GUC CGUUUAGAGG AA CGUuu   cuucgu    cg   a
    c   C          A  C     ggu      ---a  uac 

>mtr-MIR399j (-35.00)   [mtr-miR399j:66-86]

--uuacu      uga          a  -    gac   -     u 
       gggcaa   cuucuuuggc gu aguu   uug aucau c
       ||||||   |||||||||| || ||||   ||| |||||  
       CCCGUU   GAAGAAACCG ca ucaa   aac uagua a
uuaacGC      -UA          C  c    aca   g     g 

>mtr-MIR399k (-39.19)   [mtr-miR399k:69-89]

    a     g      cu         -g       -  uagagag 
aaug uaggg aaaucu  uuuggcaga  aggagua gc       c
|||| ||||| ||||||  |||||||||  ||||||| ||        
uuac GUCCC UUUAGA  AAACCGUuu  ucuucgu cg       u
    c     G      AG         ga       u  uacaagu 

>mtr-MIR166e (-52.00)   [mtr-miR166e:81-101]

u            uu g    cu         uc     -c    agg   uu 
 uugaggggaaug  g cugg  cgaggcuuu  aguuu  acaa   aag  c
 ||||||||||||  | ||||  |||||||||  |||||  ||||   |||   
 aacuCCCCUUAC  C GACC  GCUucggaa  ucaag  uguu   uuc  a
a            UU G    AG         ua     ua    -aa   ug 

>mtr-MIR156e (-83.20)   [mtr-miR156e:6-26]

   u U         -              u  -          uuauauauauauauauauauauauauauauauauauauauau 
ggu g UGACAGAAG AUAGAGAGCACaga ga ugauaugcau                                          a
||| | ||||||||| |||||||||||||| || ||||||||||                                          u
cca c acugucuuc uaucucucguguuu cu acuauacgug                                          a
   - u         g              c  c          uuuuaaguagagguacgucgaggucgaggaguauauauauau 

>mtr-MIR319b (-68.03)   [mtr-miR319b:156-175]

--u   a     uu          cuc     u   aa       u     a -  g   ac       uc  aa  u      aaauaua 
   aag gagcu  cuuuagucca   auggg gac  uaagauu caauu g cu cug  ucauuca  ca  ug ugagua       u
   ||| |||||  ||||||||||   ||||| |||  ||||||| ||||| | || |||  |||||||  ||  || ||||||       a
   uuC CUCGA  GAAGUCAGGU   uaucc uug  auucuaa guuaa c ga ggc  aguaagu  gu  ac acucau       g
cuu   C     GG          Uca     u   -a       -     a a  g   gu       ga  aa  u      auacaaa 

>mtr-MIR171c (-36.70)   [mtr-miR171c:80-100]

a             u       c      --------    -     aauaa   u 
 uugagauauuggc ugguuca ucagaa        gaaa caaaa     cac a
 ||||||||||||| ||||||| ||||||        |||| |||||     ||| c
 aacuUUAUAACCG GCCGAGU AGUuuu        uuuu guuuu     gug u
a             U       U      aguuuuag    a     -guaa   u 

>mtr-MIR395q (-47.00)   [mtr-miR395q:80-100]

u  u          ug          gca      uau      gg     aa 
 cu agaguuccuu  aacgcuucau   ugagaa   cuauuu  ucuaa  u
 || ||||||||||  ||||||||||   ||||||   ||||||  |||||   
 gg uCUCAAGGGG  UUGUGAAGUA   auucuu   gauaaa  agauu  c
g  u          GU          --a      cuu      -a     ac 

>mtr-MIR398a (-48.50)   [mtr-miR398a:73-93]

u        a     a               ug    aucau     gu 
 cucagagg gugac cugagaacacaagau  auua     auaau  a
 |||||||| ||||| |||||||||||||||  ||||     |||||  u
 gaguUUCC CACUG GACUCUUGUGUuuua  ugau     uguug  u
u        C     -               gu    --cau     gu 

>mtr-MIR172 (-55.20)   [mtr-miR172:88-108]

-  c g  g                a  ag  u ug       u         u  u 
 gc g ug agcaucaucaggauuc ca  au u  aaggguu aauuuguuu ga u
 || | || |||||||||||||||| ||  || |  ||||||| ||||||||| || g
 cg c AC UCGUAGUAGUCCUAAG gu  ua a  uucccga uuagauaaa cu u
a  u G  G                A  -a  c gu       -         -  u 

>mtr-MIR393b (-43.70)   [mtr-miR393b:6-26]

-a  c            C    U          cuaauuaagucccuagcuacuuaauua 
  gg aUCCAAAGGGAU GCAU GAUCccaaau                           a
  || |||||||||||| |||| ||||||||||                            
  cu uagguuucccua cgua cuaggguuua                           c
ua  -            u    -          uaauacucuauaauuccuuuaauucaa 

>mtr-MIR398b (-33.76)   [mtr-miR398b:62-82]

u  ua     u    a     c       ---agcuau    uu 
 uc  caggg cgac ugaga cacauga         caua  u
 ||  ||||| |||| ||||| |||||||         ||||   
 ag  GUCCC GCUG ACUCU GUGUacu         guau  g
a  uc     C    G     U       caaccuauu    cu 

>mtr-MIR168 (-36.44)   [mtr-miR168:6-26]

        C       U  U    AA   --    --auccac      c 
cugauUUG UUGGUGC GG CGGG  cca  uuac        aguuuc g
|||||||| ||||||| || ||||  |||  ||||        ||||||  
gacuaagc aacuacg uc gccc  ggu  aaug        ucaaag u
        u       u  u    ca   ua    auucccuu      a 

>mtr-MIR169g (-83.40)   [mtr-miR169g:6-26]

auaugCAGCCAAGGAUGACUUGCCGGcgagccucuuucgauacuuuuaugacauaauuaaucauguggaua  c   -  a       c c           a    u 
                                                                       gc aag gu cuaaacu a uuugcacuaaa caaa a
                                                                       || ||| || ||||||| | ||||||||||| ||||  
                                                                       cg uuc cg gauuuga u aaacgugauuu guuu u
-----augcaucggucucugcugaacggccuguugguuaguguaaccuugauccuguaaacugaucggcaa  c   g  -       u c           c    u 

>mtr-MIR156f (-49.40)   [mtr-miR156f:6-26]

-  u     A       -            --   aa         aa 
 gu ugUUG CAGAAGA UAGAGAGCACau  cug  caaacacaa  g
 || ||||| ||||||| ||||||||||||  |||  |||||||||   
 ca acaac gucuucu gucucucgugug  gac  guuuguguu  a
u  u     c       c            uu   aa         ac 

>mtr-MIR399l (-41.00)   [mtr-miR399l:54-74]

aaca        c      cc        aaaaag   u 
    auagggca cucucu  uggcaagu      ggc c
    |||||||| ||||||  ||||||||      ||| a
    uGUCCCGU GAGAGG  ACCGUuca      ccg g
ucgg        U      AA        --auaa   u 

>mtr-MIR156g (-45.80)   [mtr-miR156g:6-26]

   u U         -A          u     ugauaugcauacacauauauauacaac 
ggu g UGACAGAAG  UAGAGGGCAC aagga                           a
||| | |||||||||  |||||||||| |||||                            
cca c acugucuuc  aucucucgug uuccu                           u
   - u         ag          u     uuacuuuacguuaauucgaggaggagg 

>mtr-MIR399m (-44.00)   [mtr-miR399m:60-80]

ag          ug     a           ---ua   u au 
  ucauagggca  ucucu uuggcagguga     uag g  a
  ||||||||||  ||||| |||||||||||     ||| |   
  aguAUCCCGU  AGAGG AACCGUucacu     auc c  u
ua          CG     A           uaaag   u gg 

>mtr-MIR399n (-39.90)   [mtr-miR399n:75-95]

ag  a       ug     a           uauggugauauuucauuu 
  uc uagggca  ucucu uuggcagguga                  g
  || |||||||  ||||| |||||||||||                   
  ag AUCCCGU  AGAGG AACCGUucacu                  a
ug  c       CG     A           uaaagaucucggaauuuc 

>mtr-MIR399o (-41.10)   [mtr-miR399o:67-87]

ag  a       ug     a           u     auuu  -  u 
  uc uagggca  ucucu uuggcagguga auuuc    ga cu a
  || |||||||  ||||| ||||||||||| |||||    || ||  
  ag GUCCCGU  AGAGG AACCGUucacu uaaag    cu gg g
ug  c       CG     A           -     --au  c  a 

>mtr-MIR398c (-36.61)   [mtr-miR398c:62-82]

uuc  -     c     c    c       a uuaucau      cu 
   ca caggg cgacc gaga cacauga g       augugu  a
   || ||||| ||||| |||| ||||||| |       ||||||  a
   gu GUCCC GCUGG CUCU GUGUgcu c       uacaca  g
-aa  c     C     A    U       - -------      uc 

>mtr-MIR164b (-57.40)   [mtr-miR164b:6-26]

-  a     A    CA         CAau         ugaacauacacacaugauggaagugaauacaaa 
 ca gaUGG GAAG  GGGCACGUG    acuaacuca                                 g
 || ||||| ||||  |||||||||    |||||||||                                 a
 gu cuacc cuuc  cccguguac    ugauugagu                                 g
a  a     c    uc         uucu         uaauuuuuuuacuuuguauucucuuacaucuaa 

>mtr-MIR156h (-42.40)   [mtr-miR156h:6-26]

ugc  U          -             -u     a    --a  g 
   ug UGACAGAAGA UAGAGAGCACaga  gauga augc   ug a
   || |||||||||| |||||||||||||  ||||| ||||   || a
   ac acugucuucu auuucucguguuu  uuacu uacg   ac g
-cc  u          u             cc     c    gua  g 

>mtr-MIR166f (-54.50)   [mtr-miR166f:154-174]

--   uu             u   a       cacaca   -      uucu    uuu  -a    -u      uaauuuauguucauacauc 
  ugu  ggaaugagguuug ucc agaucau      uca uguuuc    uccc   ca  uaau  cuugau                   u
  |||  ||||||||||||| ||| |||||||      ||| ||||||    ||||   ||  ||||  ||||||                   a
  aca  CCUUACUUCGGAC AGG Ucuagug      agu auagag    aggg   gu  auua  gaacua                   u
cc   CU             C   C       ----ag   u      ---u    uac  ac    cu      uuauauauaucuauauaua 

>mtr-MIR160d (-53.40)   [mtr-miR160d:6-26]

-        C       CU          ug a    c      g 
 uagugUGC UGGCUCC  GUAUGCCAuu  u gagu caucac a
 |||||||| |||||||  ||||||||||  | |||| ||||||  
 gucguacg acugagg  caugcgguaa  g uuca guagug c
u        u       cu          gu a    a      a 

>mtr-MIR164c (-35.86)   [mtr-miR164c:6-26]

- uu          CA            ccgu    cucucu 
 c  guUGGAGAAG  GGGCACGUGCAa    agau      c
 |  ||||||||||  ||||||||||||    ||||      a
 g  caaccuuuuc  cucgugcacguu    ucua      a
a uu          ac            uuac    acuuca 

>mtr-MIR164d (-34.50)   [mtr-miR164d:6-26]

-  c u      A     -          --     u 
 ca g UGGAGA GCAGG GCACAUGCUu  gauuu a
 || | |||||| ||||| ||||||||||  ||||| u
 gu c accucu cguuc cguguacgag  uugaa c
g  a u      -     u          uc     a 

>mtr-MIR166g (-47.40)   [mtr-miR166g:82-102]

u   a        uu      cu      cg    cuucu       ---a    a 
 uug ggggaaug  gucugg  cgagga  cuuu     cgaucua    ugca a
 ||| ||||||||  ||||||  ||||||  ||||     |||||||    ||||  
 aac CCCCUUAC  CGGACC  GCUcuu  gaaa     guuaggu    gugu u
u   c        UU      AG      au    ----u       acug    u 

>mtr-MIR171d (-52.30)   [mtr-miR171d:80-100]

aa            c       c       aagugau       -    a   ag 
  ugagauauuggc ugguuca ucagacc       aaaccac uaag uac  u
  |||||||||||| ||||||| |||||||       ||||||| |||| |||   
  acuCUAUAACCG GCCGAGU AGUuugg       uuuggug guuc aug  a
uc            U       U       -----gu       u    -   uu 

>mtr-MIR171e (-38.90)   [mtr-miR171e:68-88]

    c          a         c  a  -  -ga      ugua 
aaag gauguuggug gguucaauc ga ga cg   uuuaca    u
|||| |||||||||| ||||||||| || || ||   ||||||     
uuuc CUAUAACCGC CCGAGUUAG cu cu gc   aaaugu    a
    a          G         A  -  a  aua      ugag 

>mtr-MIR396a (-38.20)   [mtr-miR396a:6-26]

ugc                   A     uucguau   -a     gu 
   uuUUCCACAGCUUUCUUGA CUUcu       cuu  aaucu  u
   ||||||||||||||||||| |||||       |||  |||||  u
   agagggugucgaaagaacu gaaga       gaa  uuaga  u
aua                   c     ---uccu   aa     ac 

>mtr-MIR396b (-37.80)   [mtr-miR396b:6-26]

   uc            C          -uc   auugaguuccuuu 
uau  UUCCACAGCUUU UUGAACUGca   caa             g
|||  |||||||||||| ||||||||||   |||              
aua  agggugucgaaa aacuuggcgu   guu             c
   ga            u          uuu   accgguaccguua 

>mtr-MIR169h (-35.60)   [mtr-miR169h:6-26]

   u        A  UG   U       -u  --u    gaaaa 
gau uGAGCCAA GA  ACU GCCGGca  gc   gccu     g
||| |||||||| ||  ||| |||||||  ||   ||||      
uug acuugguu cu  uga cggucgu  ug   uggg     c
   u        a  gu   -       uu  uug    aagaa 

>mtr-MIR169i (-36.90)   [mtr-miR169i:6-26]

-    u        A  UG   U       -u  --u    gaaaa 
 agau UGAGCCAA GA  ACU GCCGgca  gc   gccu     g
 |||| |||||||| ||  ||| |||||||  ||   ||||      
 uuug acuugguu cu  uga cggucgu  ug   uggg     c
g    u        a  gu   -       uu  uug    aagaa 

>mtr-MIR169j (-30.94)   [mtr-miR169j:6-26]

g    C  C      UG         uaauauau    u 
 agug AG CAAGGA  ACUUGCCGG        cuaa u
 |||| || ||||||  |||||||||        ||||  
 uuac uc guucuu  ugaacggcc        gguu c
-    a  a      gu         --uucuuu    c 

>mtr-MIR156i (-43.10)   [mtr-miR156i:6-25]

-gauau        -    -        au    c  u         a 
      UGACAGAA GAGA GUGAGCAC  gcug ag gauuguaug u
      |||||||| |||| ||||||||  |||| || |||||||||  
      acugucuu cucu cacucgug  uggu uc uuaacauac a
uauucu        u    u        cg    -  -         g 

>mtr-MIR171f (-48.50)   [mtr-miR171f:70-90]

---g   a        ug             -- g    u      aua 
    aug gauauugg  cgguucaaucaga  a gcag gcuuuu   a
    ||| ||||||||  |||||||||||||  | |||| ||||||    
    uGC CUAUAACC  GCCGAGUUaguuu  u uguc cgaaaa   u
auug   A        GU             au g    u      acu 

>mtr-MIR166h (-40.20)   [mtr-miR166h:67-87]

   ca         u     a       c     guca    uaaa 
guu  ggggaaugg gucug uucgaga cauuc    caag    c
|||  ||||||||| ||||| ||||||| |||||    ||||    a
cga  CCCCUUACU CGGAC AGGCUcu guaag    guuc    g
   uc         U     C       a     ---a    cgau 

>mtr-MIR160e (-48.70)   [mtr-miR160e:6-26]

-gu      C       CU         a  ug   c       a 
   augUGC UGGCUCC  GUAUGCCAu ua  aag ucauuga a
   |||||| |||||||  ||||||||| ||  ||| |||||||  
   uauacg accgagg  uaugcggua gu  uuc aguaacu a
ccu      a       ag         g  gu   c       a 

>mtr-MIR169m (-47.72)   [mtr-miR169m:6-26]

a    G    -                -ua    aguuuguc         a 
 aaug AGCC AAGGAUGACUUGCCGG   uauu        gcuaaagcu a
 |||| |||| ||||||||||||||||   ||||        |||||||||  
 uuau ucgg uuccuacuggacggcc   augg        ugauuucga c
-    a    c                cuc    ---guugu         u 

>mtr-MIR169l (-102.30)   [mtr-miR169l:6-26]

agaugAAGCCAAGGAUGACUUGCCGGuauaauaguaauuugccacaaaucuagauagcuauua  u          g            aa  a        --c g             u   -u   uua 
                                                               gc auguuuggau ggcggugagauu  ca aauuacag   a cauugugauuuug uga  gcu   a
                                                               || |||||||||| ||||||||||||  || ||||||||   | ||||||||||||| |||  |||   a
                                                               cg uauaaaucua cugccacucuaa  gu uuaauguc   u gugacauuaaaac auu  uga   g
-----------------------uuauaucggcuuccuacuggacggccuuuacuuugauuua  -          a            ga  a        acu g             u   uu   ugu 

>mtr-MIR169k (-40.00)   [mtr-miR169k:6-26]

g    C         UG           g  --  --a     a 
 aaug AGCCAAGGG  AUUUGCCGGca au  au   uauga u
 |||| |||||||||  ||||||||||| ||  ||   |||||  
 uuac ucgguucuc  ugaacggcugu ua  ua   auacu a
-    a         cu           g  cg  gag     u 

>mtr-MIR395r (-45.80)   [mtr-miR395r:86-106]

   u          ug          gcau      au      ----auu   u u 
ucu agaguuccuu  aacgcuucau    gagaau  cuaucu       ugg c a
||| ||||||||||  ||||||||||    ||||||  ||||||       ||| |  
agg uCUCAAGGGG  UUGUGAAGUA    uuuuua  gauaga       acc g a
   u          GU          -acu      cc      aaagauu   u a 

>mtr-MIR399p (-41.00)   [mtr-miR399p:54-74]

aaca        c      cc        aaaaag   u 
    auagggca cucucu  uggcaagu      ggc c
    |||||||| ||||||  ||||||||      ||| a
    uGUCCCGU GAGAGG  ACCGUuca      ccg g
ucgg        U      AA        --auaa   u 

>mtr-MIR171g (-52.30)   [mtr-miR171g:80-100]

aa            c       c       aagugau       -    a   ag 
  ugagauauuggc ugguuca ucagacc       aaaccac uaag uac  u
  |||||||||||| ||||||| |||||||       ||||||| |||| |||   
  acuCUAUAACCG GCCGAGU AGUuugg       uuuggug guuc aug  a
uc            U       U       -----gu       u    -   uu 

>mtr-MIR169n (-36.90)   [mtr-miR169n:6-26]

-    u        A  UG   U       -u  --u    gaaaa 
 agau UGAGCCAA GA  ACU GCCGgca  gc   gccu     g
 |||| |||||||| ||  ||| |||||||  ||   ||||      
 uuug acuugguu cu  uga cggucgu  ug   uggg     c
g    u        a  gu   -       uu  uug    aagaa 

>mtr-MIR169o (-36.90)   [mtr-miR169o:6-26]

-    u        A  UG   U       -u  --u    gaaaa 
 agau UGAGCCAA GA  ACU GCCGgca  gc   gccu     g
 |||| |||||||| ||  ||| |||||||  ||   ||||      
 uuug acuugguu cu  uga cggucgu  ug   uggg     c
g    u        a  gu   -       uu  uug    aagaa 

>ghr-MIR156a (-52.10)   [ghr-miR156a:9-28]

a   ga         -    A        a      acu   uu     cuug 
 agg  ggUGACAGA AGAG GUGAGCAC cagggu   uuc  gcaug    a
 |||  ||||||||| |||| |||||||| ||||||   |||  |||||    g
 uuc  cuacugucu ucuc cacucgug gucucg   aag  cguac    c
-   ac         a    c        c      ---   uu     uuuc 

>ghr-MIR156b (-49.70)   [ghr-miR156b:3-22]

--------------------         -    A        a      acu   uu     cuug 
                    ggUGACAGA AGAG GUGAGCAC cagggu   uuc  gcaug    a
                    ||||||||| |||| |||||||| ||||||   |||  |||||    g
                    cuacugucu ucuc cacucgug gucucg   aag  cguac    c
cucucucucucucuuuucac         a    c        c      ---   uu     uuuc 

>ghr-MIR156c (-45.40)   [ghr-miR156c:3-22]

----    U    -    A           g   ucu  g       cuug 
    ggUG CAGA AGAG GUGAGCACaca ggu   uu uagcaug    a
    |||| |||| |||| ||||||||||| |||   || |||||||    g
    cuac gucu ucuc cacucgugugu ucg   aa aucguac    c
ucac    u    a    c           a   ---  g       uuuc 

>ghr-MIR156d (-57.00)   [ghr-miR156d:9-28]

gag     U           -           - a      uu     aa 
   agguu GACAGAAGAGA GUGAGCACacg c ggcaga  guaug  a
   ||||| ||||||||||| ||||||||||| | ||||||  |||||   
   uucga cugucuucucu cacucgugugc g ccguuu  cauac  g
--a     -           u           c c      -c     cg 

>gra-MIR157a (-44.80)   [gra-miR157a:5-25]

gu  U         -              u  -   ug    ----a       
  ug UGACAGAAG AUAGAGAGCACaga ga ugg  ugca     uuagga 
  || ||||||||| |||||||||||||| || |||  ||||     ||||| g
  ac acugucuuc uauuucucguguuu cu acc  acgu     aguucu 
cc  u         g              c  c   cu    aacga       

>gra-MIR157b (-44.50)   [gra-miR157b:5-25]

gu  U         -              u  -   --   -   cu 
  ug UGACAGAAG AUAGAGAGCACaga ga ugg  ugu ugc  a
  || ||||||||| |||||||||||||| || |||  ||| |||   
  ac acugucuuc uaucucucguguuu cu acc  acg acg  u
cu  u         g              c  c   cu   u   ug 

>ghr-MIR162a (-46.80)   [ghr-miR162a:94-114]

-----------uuuuuagcguu     a   a a     g    c    c       uc   c  aga    -      g 
                      ggggu aag c cugga gcag gguu aucgauc  uuc ug   auuu uguugu a
                      ||||| ||| | ||||| |||| |||| |||||||  ||| ||   |||| ||||||  
                      ucuca uuc g GACCU CGUC CCAA UAGCUag  aag ac   uaaa acaaua g
auugauuguauuuugaaguacc     a   c c     A    U    A       cu   u  --a    c      a 

>ghr-MIR166b (-63.59)   [ghr-miR166b:130-150]

-  a        uu      a    g      u   --u uc         ----uucccu       ---u     g  u 
 ug ggggaaug  gucugg ccgg gacacu gug   u  uaauccguu          gcaauau    guucu au a
 || ||||||||  |||||| |||| |||||| |||   |  |||||||||          |||||||    ||||| ||  
 ac CCCCUUAC  CGGACC GGCU cuguga cau   g  auuagguaa          cguuaua    uaggg ug a
a  c        UU      A    g      u   guu ga         uguuuuuauu       uuuc     g  c 

>ghb-MIR169a (-86.60)   [ghb-miR169a:50-70]

--uauagaga      aa       a      gau   g     u       -        A     U     -c      ugu   c a      aau 
          ggaaga  aggucua caugaa   aaa agucu guuuggU AGCCAAGG UGACU GCCUG  accuaa   cca g gguuuu   a
          ||||||  ||||||| ||||||   ||| ||||| ||||||| |||||||| ||||| |||||  ||||||   ||| | ||||||   c
          ccuucu  uccggau guacuu   uuu ucgga cagauca ucgguucc acuga cggac  uggguu   ggu c ccaaaa   a
gguuaccccg      ac       c      acu   g     -       a        -     -     cc      ---   - -      acu 

>ghr-MIR390a (-52.50)   [ghr-miR390a:15-35]

u         u  u          G         C   -  u    ---cau uuu  a  uu 
 ggaagaauc gu AAGCUCAGGA GGAUAGCGC aug ga gauc      c   ca gc  u
 ||||||||| || |||||||||| ||||||||| ||| || ||||      |   || ||   
 ucuucuugg ua uuugaguccu ccuaucgcg uau cu cuag      g   gu cg  c
u         c  c          a         a   a  c    uuuauu uau  a  ua 

>ghr-MIR390b (-54.20)   [ghr-miR390b:18-38]

---   u         u  u          G         C   -  u    ---cau uuu  a  uu 
   gua ggaagaauc gu AAGCUCAGGA GGAUAGCGC aug ga gauc      c   ca gc  u
   ||| ||||||||| || |||||||||| ||||||||| ||| || ||||      |   || ||   
   cgu ucuucuugg ua uuugaguccu ccuaucgcg uau cu cuag      g   gu cg  c
guu   -         c  c          a         a   a  c    uuuauu uau  a  ua 

>ghr-MIR390c (-42.70)   [ghr-miR390c:11-31]

ag    u  u          G         C   -  u    ---cau uuu  a  uu 
  aauc gu AAGCUCAGGA GGAUAGCGC aug ga gauc      c   ca gc  u
  |||| || |||||||||| ||||||||| ||| || ||||      |   || ||   
  uugg ua uuugaguccu ccuaucgcg uau cu cuag      g   gu cg  c
--    c  c          a         a   a  c    uuuauu uau  a  ua 

>ghr-MIR396a (-49.30)   [ghr-miR396a:11-31]

-cuuc    uc            C            uuc     aucagaucauucauucauucguug 
     guau  UUCCACAGCUUU UUGAACUGcaau   augua                        u
     ||||  |||||||||||| ||||||||||||   |||||                        c
     caua  agggugucgaaa aacuuggcguug   ugcau                        g
acaaa    ga            u            --u     gagcauauauacgucgugguaguu 

>ghr-MIR396b (-50.80)   [ghr-miR396b:11-31]

cuuc    uc            C            uuc     a  agaucauucauucauucauug 
    guau  UUCCACAGCUUU UUGAACUGcaau   augua uc                     u
    ||||  |||||||||||| ||||||||||||   ||||| ||                     c
    caua  agggugucgaaa aacuuggcguug   ugcau ag                     g
caaa    ga            u            --u     g  cauacauacguugugguaguu 

>ghr-MIR399a (-39.90)   [ghr-miR399a:92-112]

--uga au     a       a      g    aggcaguauauggcuccauucaucaggca 
     g  auuac gggcaaa ucuuca uggc                             u
     |  ||||| ||||||| |||||| ||||                             c
     c  uaauG CCUGUUU AGAGGU ACCG                             a
cuugg cu     G       -      A    Ccucuugugugacguuaaaagguaugucg 

>ghr-MIR399b (-47.50)   [ghr-miR399b:98-118]

uga au     a       a      g    aggcagccauuguauauggcuccguucaucag 
   g  auuac gggcaaa ucuuca uggc                                g
   |  ||||| ||||||| |||||| ||||                                c
   c  uaauG CCUGUUU AGAGGU ACCG                                a
ugg cu     G       -      A    Ccucuugugugacguuaaaagguaugucgacu 

>ppt-MIR156c (-61.50)   [ppt-miR156c:10-29]

   u   a      -                g  g    u     ag 
gag ggg gUGACA GAAGAGAGUGAGCACa uu agca guacg  g
||| ||| |||||| |||||||||||||||| || |||| |||||  g
cuc ucc cacugu cuucucucacucgugu aa ucgu caugc  u
   -   g      a                g  g    u     ag 

>ppt-MIR160a (-57.30)   [ppt-miR160a:11-31]

-    u gaa   C           U      c   c g      c   a 
 ggag g   cUG CUGGCUCCCUG AUGCCA cug g ggcuug caa g
 |||| |   ||| ||||||||||| |||||| ||| | |||||| ||| u
 ccuc c   gac gaccgagggac uacggu gau c ucgagc guu g
u    - --a   a           c      c   a g      u   a 

>ppt-MIR160b (-42.50)   [ppt-miR160b:11-31]

au  u  a  C  C          U      a   c  gc uu c     a 
  gc ag uc GC UGGCUCCCUG AUGCCA cug ga  c  g uaaau u
  || || || || |||||||||| |||||| ||| ||  |  | |||||  
  cg uc ag cg acugagggac ugcggu gau cu  g  c guuug u
-g  u  c  a  a          u      c   a  ua uu c     u 

>ppt-MIR160c (-47.30)   [ppt-miR160c:11-31]

auau   a  C C         UG       -  ugc        c   a 
    ugg uc G CUGGCUCCC  CAUGCCA cu   gaaucuug caa c
    ||| || | |||||||||  ||||||| ||   |||||||| ||| g
    acc gg c gacuggggg  gugcggu gg   cuuggggc guu u
acau   -  a a         gu       c  -ua        u   u 

>ppt-MIR160d (-52.80)   [ppt-miR160d:11-31]

aug ug  -  C  C         G       c        g  -    ag 
   u  ga uc GC UGGCUCCCU CAUGCCG cugugaau cu guga  a
   |  || || || ||||||||| ||||||| |||||||| || ||||   
   a  cu ag cg accgaggga gugcggu gauacuua ga cauu  g
--a gu  c  a  a         g       c        a  u    ca 

>ppt-MIR166b (-46.60)   [ppt-miR166b:74-94]

  u     u a      cc  a   a       cau   c    c   uag 
cu uguug g ggaaug  gc ugg ccgaagc   gcg ucca auc   a
|| ||||| | ||||||  || ||| |||||||   ||| |||| |||    
ga acgac C CCUUAC  CG ACC GGCUucg   cgc aggu uag   c
  c     u C      UU  G   A       uau   -    u   ugg 

>ppt-MIR166a (-46.30)   [ppt-miR166a:74-94]

uc     u a      ccc     c       ---c    gccu uu    u 
  ugcug g ggaaug   ccugg ccgaagc    augu    u  caug c
  ||||| | ||||||   ||||| |||||||    ||||    |  ||||  
  acgac C CCUUAC   GGACC GGCUucg    uaca    g  gugc c
ac     u C      UUC     A       aaau    -aau gg    a 

>ppt-MIR167 (-29.40)   [ppt-miR167:11-31]

accaaaagu       U     C      ----    aa   u 
         uGGAAGC GCCAG AUGAUC    CUuu  cuu u
         ||||||| ||||| ||||||    ||||  ||| c
         acuuucg cgguc uacuag    gaaa  gag u
--uuguccu       u     -      acua    gg   a 

>ppt-MIR319e (-86.10)   [ppt-miR319e:147-167]

cuagccg            c        u  ug     -ug     -      u   g   au   a  uuc   c      u  uu 
       ugggagcuccuu cgguucaa ag  gcuga   ugagg uugcac gcu ccg  uca ac   cgg uucccu uc  a
       |||||||||||| |||||||| ||  |||||   ||||| |||||| ||| |||  ||| ||   ||| |||||| ||  a
       aCCCUCGAGGGA GUCAGGUU uc  cgauu   acuuc ggcgug cga ggc  agu ug   gcc aaggga ag  c
-uucuga            A        C  cg     uca     u      u   g   gu   c  uaa   u      c  ca 

>ppt-MIR395 (-37.10)   [ppt-miR395:150-169]

-aauu   aaa        ----      auauucuagucguugguuuauggugccuaagaaaaauggaucguuauguuuuauucaagaua 
     uug   ccuucuuu    ugcuuc                                                              u
     |||   ||||||||    ||||||                                                              a
     aac   GGAAGGGG    GCGAAG                                                              c
uauuu   --g        GUUU      UCguuugaguagauaauuucuaggauauggacguaaagaauaucaaugauguaaguaaccga 

>ppt-MIR408 (-49.00)   [ppt-miR408:11-32]

acaaccag     CA    A   UC      Cca        gauu        ccgaa    au   acca    gagau   ac 
        caCUG  CUGC UCU  CCUGUG   ucuucguc    gucucgua     agug  uca    cagc     cag  u
        |||||  |||| |||  ||||||   ||||||||    ||||||||     ||||  |||    ||||     |||   
        gugac  gacg gga  ggauac   agaaguag    uagagcau     ucac  agu    gucg     guc  c
--------     -c    -   -c      ---        ----        ---ag    --   ---a    aaauu   aa 

>ppt-MIR414 (-33.86)   [ppt-miR414:146-166]

----------------------------a    uuc    -acaauua    a   caaugcuagaauguggggcucaccagauuuuccaacugcauuggcua 
                             gacg   aaga        gaga gac                                               g
                             ||||   ||||        |||| |||                                                
                             CUgc   uucu        uucu cug                                               c
gacuacgacuCCUGCUCCUACUACUCCUA    ---    acuacugc    a   cuacuacuucuacuguuucuauaccaaugacgguuucgcgaucgucu 

>ppt-MIR419 (-20.10)   [ppt-miR419:52-72]

-   -u       -uua     a    uaaccgua    ca gu 
 ggu  gccugug    guuau guuc        aguc  c  c
 |||  |||||||    ||||| ||||        ||||  |   
 cua  cggaUAU    CAGUA UAAG        Ucgg  g  g
u   uc       GUAG     G    -----UAG    ag ag 

>ppt-MIR477c (-34.90)   [ppt-miR477c:12-31]

gu  a          C CU            a   c   uuu 
  ug uuuuucCUCU C  CAAAGGCUUCCA cgu cuu   g
  || |||||||||| |  |||||||||||| ||| |||   u
  ac aaggaggaga g  guuucugaaggu gca gaa   g
--  a          a uu            c   c   cga 

>ppt-MIR477a (-47.20)   [ppt-miR477a-5p:12-31] [ppt-miR477a-3p:58-78]

gu  c             U          C   -a  a  u  g 
  ug uuuuucCUCUCCC CAAAGGCUUC Aac  ug ug gc u
  || ||||||||||||| |||||||||| |||  || || ||  
  ac aagaAGGAGAGGG GUUUCCGAAG uug  ac ac cg a
--  a             U          A   ca  -  -  a 

>ppt-MIR477f (-58.70)   [ppt-miR477f:14-34]

gu    g   u        A         A   A   -      ----   a   c       uu 
  guuu uuu ucUCCCUC AAGGCUUCC ACA cag gagggu    aca uuc auugugg  a
  |||| ||| |||||||| ||||||||| ||| ||| ||||||    ||| ||| |||||||  u
  uaag aag agagggag uuccgaagg ugu guc cucucg    ugu gag ugauacc  a
-u    a   u        c         c   c   u      uuuu   g   u       ca 

>ppt-MIR477g (-58.30)   [ppt-miR477g-5p:14-34] [ppt-miR477g-3p:98-118]

gu    g   u      U A             A   --uc     u  c  uga        uu 
  guuc uuu ucUCCC C AAGGCUUCCAACA cag    ggaau aa uc   ugcggcca  a
  |||| ||| |||||| | ||||||||||||| |||    ||||| || ||   ||||||||  u
  caag aag AGAGGG G UUCCGAAGGUUGu guc    ucuua uu ag   acguuggu  c
-c    a   c      U C             c   uuga     -  a  -ug        ca 

>ppt-MIR534b (-110.00)   [ppt-miR534b:250-271]

g   u  u          u   -      g g    u        ---  -ucac       aauuuu     -gc     a    u ug    ucugu      -gc  --a    cu   u     aca   ga    -     aa 
 cac ca guaugcaacu gua uggaca a ugac agucuagu   gu     gagugcc      uggau   cuucu uugc g  cugg     gaggcg   gu   acuc  ugu uugca   guu  cagu gcaca  g
 ||| || |||||||||| ||| |||||| | |||| ||||||||   ||     |||||||      |||||   ||||| |||| |  ||||     ||||||   ||   ||||  ||| |||||   |||  |||| |||||  u
 gug gu CAUACGUUGA CAU ACCUGU U acug ucagauca   cg     cuuacgg      gccug   gaagg ggcg c  gacu     cucugu   ua   uggg  acg agcgu   cag  gucg ugugu  a
g   u  u          -   U      A g    c        aau  uuaga       -cagcc     uuu     -    - gu    ----u      auc  gaa    uu   c     --g   ug    g     au 

>ppt-MIR893 (-89.76)   [ppt-miR893:151-170]

cucugcauugcucucaaa        cuc         --cua   u  aucccag   c              gau      --      c     c   uc      auccc   auacc 
                  ccuccucc   uuccuuguc     gca ag       ucc uucuuccuugucuu   gcacga  cccaau cucuc ucu  uucuuu     guc     c
                  ||||||||   |||||||||     ||| ||       ||| ||||||||||||||   ||||||  |||||| ||||| |||  ||||||     |||     a
                  ggaggagg   aaggaacag     cgu uc       agg aagaaggaaCAGGG   CGUGUU  GGGUUA gagag agg  gagaaa     cag     u
-----------------a        -aa         aacca   -  aucauca   a              --U      CA      a     a   uu      --gaa   aauca 

>ppt-MIR894 (-36.00)   [ppt-miR894:51-70]

---------------------------------------------------------------cauaauucaaauaauccaaaaaaaauaaaccaaauaccuuccaccucaa    -    C      --     Ca       
                                                                                                                gCGU UUCA GUCGGG  UUCAC  aauaug 
                                                                                                                |||| |||| ||||||  |||||  ||||| u
                                                                                                                cgua gagu uaguuu  aagug  uuaugu 
auaacaaacuaauacuaacaauugcaaauuaauauuuaaaagauauuaggauaaccuaacaauccugaaaaacaacguuaaaagaaaauggaagguaucgguucacgagcca    a    -      ug     ua       

>ppt-MIR895 (-60.90)   [ppt-miR895:51-72]

gauucauguaauuauuguuaaccucuuuguguuccgagcuuuuaugauugGUAGCUUAGCGAGGUGUUGGUAugauaccaaucccugguuugcuuguuccuaauugaguuaugcuu       aaucua      c     --uuu   ucac 
                                                                                                                    gcacuca      ggggag gguau     ggc    u
                                                                                                                    |||||||      |||||| |||||     |||    c
                                                                                                                    cgugagu      cccuuc ccaug     ucg    g
------------------------------------------------------------------------------------cuuugaauauauagugugguaccucgguucac       auuacg      -     uacuu   uaac 

>ppt-MIR896 (-94.10)   [ppt-miR896:151-175]

--------cccac    a        gu  g uu ug ucgg     --g g    --     ug     c   g    ag     ugccuacggagcaagagauucuggguucgaucc 
             ccug gcgggggg  cu a  g  g    ucgag   g cgcu  gaccg  uggcc aau gaua  gcgcu                                 c
             |||| ||||||||  || |  |  |    |||||   | ||||  |||||  ||||| ||| ||||  |||||                                 c
             ggac cgccccuu  gg u  c  c    agcuc   c gCGG  UUGGU  GCCGG UUA CUGu  cgcgg                                 a
acguccuaaacuu    g        ug  g -- gu -uaa     aga g    AA     GA     U   A    -g     uguuagauguuaaggccgcugggugcugguacg 

>ppt-MIR897 (-40.99)   [ppt-miR897:51-73]

------------------------------------------------ucuuagcauucaaaugaccaagguguc a       u  -----------cau    au   G        G  ACUC  CA    c  cca 
                                                                           g ugccaaa gc              ucuu  cuU AUCAAGUG AA    AG  AAug gg   c
                                                                           | ||||||| ||              ||||  ||| |||||||| ||    ||  |||| ||   u
                                                                           c acgguuu cg              agaa  gaa uaguucac uu    uc  uuau uc   u
gaacggauacuucacugguucuucuauauuaaacuauucuuaccuacgaaauauuucuguaacccaucucuacua a       c  aaaucucuacccuu    au   g        g  -cua  ac    c  aac 

>ppt-MIR899 (-51.32)   [ppt-miR899:152-172]

------acggcguuuuucucggagaaaaauaccauccuuugguucaacaa       ugc  u uc  c      auacaac     -cca uu  -  u      uugacgagu 
                                                  cgguugc   gu u  ca guucgg       ccugc    g  gc ug gagaga         g
                                                  |||||||   || |  || ||||||       |||||    |  || || ||||||         c
                                                  GCUAACG   CA A  GU CAAgcc       ggacg    c  ug ac cuuucu         a
gguuaucgucgacccauacgaucagugacuaagacuucgccggccacaca       CUA  U GA  -      -gcuucc     caga cu  u  -      cccagaaga 

>ppt-MIR900 (-106.20)   [ppt-miR900-5p:106-126] [ppt-miR900-3p:153-173]

gaguaagauagagcaaaacgcagccaaagaagagucguccaguagccgacguagauggcaugcaac       u   -   ga  cc ---g    aaga    ----                                 ua u 
                                                                  uccaacu cgc aau  ua  c    cucu    ucgc    ggucuUCCCAGGUACAAGAACACAGCucaccag  g c
                                                                  ||||||| ||| |||  ||  |    ||||    ||||    |||||||||||||||||||||||||||||||||  |  
                                                                  agguuga gcg uua  au  g    gaga    agcg    ccaGAAGGGUCCAUGUUCUUGUGUcgagugguc  c g
-----------------------------------------------------------aagccua       -   g   ag  aa auaa    ----    acca                                 gc a 

>ppt-MIR901 (-45.80)   [ppt-miR901:151-171]

uaaaaaaaauaauauguugauaauauaugugaaaguaaauaaguauuaccuaagauaaguugcuaaaaggucaaaggcagcaaagguaaaaguaag    aa    g  g   aggu    ga    a   agga 
                                                                                                uaac  uggu gc acu    uuau  uggc gcu    u
                                                                                                ||||  |||| || |||    ||||  |||| |||    u
                                                                                                AUUG  AUCG CG UGA    AAUG  aucg cgg    u
----------------------------------------------gauaccgacuugaaguagauguagguaaacuacuuugggaucagcgguga    -G    G  G   ----    -G    g   agaa 

>ppt-MIR902a (-71.80)   [ppt-miR902a-5p:105-122] [ppt-miR902a-3p:151-170]

gcucgugacccucugaagggaacuuuggccugagaagagcgugggauuguaggaacaugaguggaucuacagcauuugagauuauucauuugcauc    acga            U    Ac    gug     c 
                                                                                                cgcu    UAUGAUGCAGAU CUUC  cugu   auacu u
                                                                                                ||||    |||||||||||| ||||  ||||   ||||| u
                                                                                                gcga    AUACUACGUCUG GAAG  gaca   uaugg g
-------------------------------------------------uacguggaguuaauucguagaucacaacuuacguggucuaaaugcaa    acCG            -    CA    --a     a 

>ppt-MIR902b (-90.20)   [ppt-miR902b-5p:98-118] [ppt-miR902b-3p:151-170]

gguugugauaaaucgguuccgugucgucauaaucgcaaguguugcaggcaguuaugaggagauggagagcgugcagacuu    c        a c             U    A      -   -      u 
                                                                                guuu cuuccucu g cUAUGAUGCAGAU CUUC UCUguu ugu uaucgu c
                                                                                |||| |||||||| | ||||||||||||| |||| |||||| ||| ||||||  
                                                                                uaaa gaaggaga c GAUACUACGUCUG GAAG Agacaa aca guggua u
------------------------------------------uuuuaacgcacguccgguuuaagcucgguccauaauuc    c        a C             -    C      u   u      c 

>ppt-MIR536c (-84.50)   [ppt-miR536c:151-172]

-------------------------      --        c  uu      ag c  -   u           a         ug     ua   uaaaacagagagaugaugcaauugguaugu 
                         uuguuc  gaccauug ag  gcuuuu  a gc caa gcuuggcauga ugucuugag  ucugg  gcc                              g
                         ||||||  |||||||| ||  ||||||  | || ||| ||||||||||| |||||||||  |||||  |||                              g
                         agcagg  uugguaau uc  cgagaa  U CG GUU CGAACCGUGCU acagagcuu  ggacc  cgg                              a
cuacaaucucuaggucaucuugggu      uu        -  --      cU U  U   U           A         --     uc   ucgcuugcuaaggagauuuuggucucuucu 

>ppt-MIR171a (-49.30)   [ppt-miR171a:67-87]

-   c              - c        a    a c     u u 
 agg augugauauuggug g gcucaauc gaug c augcc g g
 ||| |||||||||||||| | |||||||| |||| | ||||| | a
 ucc UACACUAUAACCGC C CGAGUuag cuac g ugcgg c u
u   -              G -        a    c u     u g 

>ppt-MIR171b (-40.30)   [ppt-miR171b:67-87]

-   c     u      -  cc        a  u u uuuu     a 
 agg augug uauugg gc  gcucaauc ga g c    ccagc a
 ||| ||||| |||||| ||  |||||||| || | |    |||||  
 ucc uACAC AUAACC CG  CGAGUUag cu c g    ggucg c
u   -     U      G  -C        a  c u uuau     g 

>ppt-MIR903 (-110.10)   [ppt-miR903:51-72]

----------------------------------------------------gaacggcuucggcuggucugccgcucaacgcggggcacuggucagcgug              G -CAA A      ug 
                                                                                                     gGCUACUUCGGCGG A    G GCagga  u
                                                                                                     |||||||||||||| |    | ||||||  a
                                                                                                     ccgguggagccgcc u    c cguccu  g
uucugcccagccuacuucucgaguuaugcggucgcagggcucgcacgucaacccugcucagggugcugggggggcucucccccggcgugcgaagcaaggag              g accc c      uu 

>ppt-MIR536b (-65.40)   [ppt-miR536b:151-172]

gucggcaguuuucguauuucgccgacuucggugacugcagaaagucgaaac     a      g   aa     -     agacuugucuggcaucauuugguagucgucaaacuuauu 
                                                   aguag gagccu uug  uugca gcggu                                       c
                                                   ||||| |||||| |||  ||||| |||||                                       u
                                                   ucauu uuuggg aac  AACGU UGUCG                                       c
-----------------acgaccaucccugcgaggaggguacaccuagaau     g      g   -C     G     AACCGUGCUUaaagaccauaguaaggcgauguugagccc 

>ppt-MIR904a (-86.60)   [ppt-miR904a:51-71]

---------------uguuggaguuccu     g g u   ---g    au     au      au           U         CAa     u   uau     ugcuug        u 
                            ucggu u g guu    caau  uugug  gcuaau  ggUCUUGUCAA GUUUAGGGG   aggcc gau   gcaga      guguaagc u
                            ||||| | | |||    ||||  |||||  ||||||  ||||||||||| |||||||||   ||||| |||   |||||      ||||||||  
                            ggcca g c cag    guua  aacac  cgauua  ccagaacgguu uaaaucccc   uccgg uua   cguuu      cauguucg a
aggacgaacucgagcaugacuaaucagc     g g -   uuaa    -c     -c      au           c         acc     -   --u     --ucaa        u 

>ppt-MIR904b (-93.30)   [ppt-miR904b:51-71]

-----------cuuuggagcgaugugugucaugaugg    ----auu     a       ac                     CAa   u   a   u      ucc  gg     gcu 
                                     cggu       uugug ugcuaau  ggUCUUGUCAAUGUUUAGGGG   agg gca cua gcaaca   cu  ugcga   c
                                     ||||       ||||| |||||||  |||||||||||||||||||||   ||| ||| ||| ||||||   ||  |||||    
                                     gcca       aacac gcgguua  ccagaacgguuguaaaucccc   ucc cgu gau cguugu   ga  gcgcu   u
aguguuaacacagaaaacugaagacgacuaggucgca    ggguuac     -       au                     acc   -   -   -      ---  au     agu 

>ppt-MIR898b (-104.00)   [ppt-miR898b:51-71]

----uacugcagaacuuaguuacagauucaucugcu        u        c                       gcg      c    auuccgggugcagcaacugacg 
                                    uuguucau uccggcau UUGCUGUGCACUACUUAGUACgc   uaguug aggc                      c
                                    |||||||| |||||||| |||||||||||||||||||||||   |||||| ||||                       
                                    gacaggua gggucgua aacgacacgugaugagucgugcg   gucaac uucg                      g
ucguuugcaagauaugucgcuugagucgccaccauc        c        u                       ---      -    cgugugagacccuuuucagaag 

>ppt-MIR898a (-83.50)   [ppt-miR898a:51-71] [ppt-miR898a*:147-167]

-----cgcagcgaagcuuagcuacacaccaaacucuc     ug u                     A        a    uau     u   ----c     au   gcaa   a 
                                     uuguu  u uccggcguaUUGCUGUGCACU CUUAGUAC cgcg   cgguu gca     uccag  gua    uug a
                                     |||||  | ||||||||||||||||||||| |||||||| ||||   ||||| |||     |||||  |||    |||  
                                     gacag  a gggucguAUAGCGACACGUGA GGAUCGug gugc   gccaa cgu     agguc  uau    agc a
ucgcgacaucaaugauuuacuaacucaaguuuucauc     gu u                     C        g    ---     -   uugaa     cu   -aga   a 

>ppt-MIR156b (-91.10)   [ppt-miR156b:51-70]

------------------------------------------gugaggcucgagugcagacacuauucaagugugggcggggggagcggga      -                g   c  cu     ag 
                                                                                           gUGACA GAAGAGAGUGAGCACg uug gc  guacg  g
                                                                                           |||||| |||||||||||||||| ||| ||  |||||  a
                                                                                           cgcugu cuucucucacucgugu aac cg  caugc  u
guggugugggaaguggaggggaggaggagggaguguguggggggaggggugggagaguaguguuuacugcaguguugcugcucccucuccg      a                g   u  uu     aa 

>cre-MIR918 (-215.30)   [cre-miR918:157-177]

     a  a         a                 a  g      - guag            gg                   c   a         c    a  c                         c 
ccaau cg gacgucugc ccgcacaugucucagga ga aucguc c    uagcaagcugcu  aggguaucucggucagcau ucg uuggcaaga gucc cu cggguacgcgccgcucaugcgauga g
||||| || ||||||||| ||||||||||||||||| || |||||| |    ||||||||||||  ||||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||||||||||||| c
gguua gc cugcagacg ggcguguacagaguccu cu uagcgg g    aucguucgauga  ucccauagagccagucgua agc aacCGUUCU CAGG GA GUCCAUgugcggcgagugcgcuacu c
     c  c         c                 c  g      u -aua            ag                   a   a         A    C  A                         u 

>cre-MIR905 (-279.30)   [cre-miR905*:38-57] [cre-miR905:235-255]

u    g                                                                    a        c    -g                       a  c          - gacaagcaagcuugggg 
 gccg gcuggggccgggcgggcugugaucgaccuggAGGUCCCUGGAUAUGGCACCuucgagguuguggucac cacucagu cggg  accucggcccaguugcuggugcu ug ucugacuacc c                 c
 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||| || |||||||||| |                 c
 cggc cgaccccggcccgcccgacacuagcuggaccuCCAGGGACCUAUACCGUGGAAgcuccaacaccagug gugaguca gccc  uggagccgggucagcgaucacga ac agacugaugg g                 g
a    g                                                                    c        c    aa                       g  a          c uccugguuacacccccc 

>cre-MIR906 (-148.70)   [cre-miR906-5p:11-31] [cre-miR906-3p:95-115]

                                                   u                  g 
ggccuacauaCGGUUGGUGGGCGUGAUCAGCagggggaagcuuuaucggaa ucgaugugcagggcgugu g
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  
ccggauguaugccaaccacccgcacuaguCGUCCCCCUUCGAAAUAGCCUu agcuacacgucccguaca g
                                                   u                  c 

>cre-MIR907 (-163.50)   [cre-miR907:153-173]

                                             u        cc    g            cauc c    ac      cu 
ccagcccagcgcucgcaccgcucgcagaagacaucgcuggcaccg guuggccg  auuu agcgcuugguca    g uggc  ccacgg  g
||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||    | ||||  ||||||   
ggucgggucgCGAGCGUGGCGAGCGUCUUCUguagcgaccguggc caaccggc  uaaa ucgcgaaccagu    c accg  ggugcc  g
                                             n        ua    -            ---u -    cc      ac 

>cre-MIR908 (-157.80)   [cre-miR908.1:9-30] [cre-miR908.2:71-92] [cre-miR908.3:161-179]

    gu      A   UG            u       ugaca           c     c     c         G                    ----            ccc 
gugg  uuUGAG AGA  CGGUCCGUUGGC auaaugu     gaccacccgcu ccuua ugacg aguUGACGC UUUGAUAGCAGGAUCauagu    acgggaccaguu   c
||||  |||||| |||  |||||||||||| |||||||     ||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||    ||||||||||||    
cacu  aaacuc ucu  gccaggcaaccg uauuaca     cuggugggCGA GGAAU ACUGC UCAacugcg aaacuaucguccuaguauca    ugcccuggucaa   u
    gu      c   ug            u       uauaa           C     A     A         g                    ccaa            cca 

>cre-MIR909 (-453.30)   [cre-miR909.2:84-104] [cre-miR909.1:167-187] [cre-miR909.3:370-390]

           c                                               c       uc                      A                      c               a         ----       a        a                 A                 c         u  ggcuccugcugcaccggcaguagcgcca 
guucccgcaca guggcugaaggucgcggagcucuuugccgacacgguggccauguggu ccgcagc  cuugccacacgggcAUGCAAAC UGACCCUGAAUGgcccugccug ggccugccccgcucc gggccuucu    gcugcug uggugcag ugcggcuggUGCUGGUC AACCGGUGGUGGuggug uggugcugu cg                            g
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||    ||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||                            c
caagggcgugu caccgacuuccagugccucgggaagcggcugugccaccgguacacca ggcgucg  gaacggugugccCGUACGUUUG ACUGGGACUUaccgggacggac ccggacggggcgagg cucggaaga    cgacgac accacguc acgccgaccacgaccag uuggccaccaccaccac accacgacg gc                            a
           u                                               u       ca                      A                      -               c         uagg       c        c                 c                 c         -  gaccgccggcgggacauggacgaggucg 

>cre-MIR910 (-212.20)   [cre-miR910:134-154]

  g                   c    --      ---   -   g                        a     c                    c    c - c         g 
cc cugcagccggucaggugca ccgg  aggugc   cgg agc guugggguugcggggcccgcaggu gcugc guugagcccgacgcugcugc gccg g c ggugcugcu c
|| ||||||||||||||||||| ||||  ||||||   ||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| | | |||||||||  
gg gacgucggccaguccacgu ggcc  uccacg   gcc ucg cgaccccgacgcccugggcgucca cgaCG CAGCUCGGGCUGCGACGAcg cggc c g ccacgacgg g
  -                   c    ag      uca   a   a                        c     C                    u    - a u         c 

>cre-MIR911 (-71.50)   [cre-miR911:63-83]

                                          
aaauggccguacuacuauugucaugucugacugcaucaugu 
|||||||||||||||||||||||||||||||||||||||| g
UUUACCGGCAUGAUGGUAACAguacagacugacguaguacu 
                                          

>cre-MIR912 (-259.90)   [cre-miR912:216-235]

    augc         -  a      g -----   c     aag            a       aa  uaaug         ----c         aca  a         u                    g                             a    a         g 
gccu    cucugccgg cc ucaaug c     gcu acgac   ggugccaucguc ccggucu  uc     ccaggcaac     agggaagac   gg uccauuuuc agugccuggcugggaucaau caagaugauaguuggauccuggacgccga ggcc ucaugcggu u
||||    ||||||||| || |||||| |     ||| |||||   |||||||||||| |||||||  ||     |||||||||     |||||||||   || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||  
cgga    gaggcggcc gg aguuac g     cgg ugcug   ccacgguagcag ggccaga  ag     gguccguug     ucccuucug   cc agguagagg ucgCGGACCGACCCUAGUUA GUucugcugucgaucuaggaccugcgguu ccgg aguacgcca c
    ccaa         c  c      g gaccu   u     cca            c       cg  ccuug         uuccc         gca  c         u                    G                             g    c         a 

>cre-MIR913 (-216.00)   [cre-miR913:61-81] [cre-miR913*:171-191]

                                c         c  c                                                        c         -c   acuu  gu 
guaucugugucgcucaugcaagggacagccaa gaauucccu gc acguuuugggggcuUGCACACUUGCGAGUCCGUGGccguguuuccaaggauguaua aagcgaagu  gag    ug  a
|||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||    ||   
cauagacacagcgaguacguucccugucgguu cuuaaggga cg ugcaaagcccccGAACGUGUGGACGCUCAGGCAccggcacagagguucuuacauau uucgcuuca  cuc    ac  u
                                u         c  c                                                        u         cc   --au  au 

>cre-MIR914 (-901.50)   [cre-miR914:561-581]

                                                                                                                                                                                                                                                                                                                                                                uaaugcguguggcagcacggcguacauuugccaguugcaucuggaaugcucagggcuggccugcucugcccuagccuggcccugcccuugcaca 
gccggacguuacggcaugacgacucacggcgugacgcugaacuugugacgaucgccguuuuaauucgggggaccuauaggcauuuguuaacucauaaucguuuuaaaucgcuccggaucuauagcgagcugggugcgggcgaccaucgcgcucgagcugcaacucgcccgggcaccugcaaagcucggcgagcaccaucguuaaauacuucguaccauucuaucucugcaccuaaacgugugcagcugaguccgcgcgcggccccucgcugcugaugccgggggcgccccccgcgccuguccccgccuccccuccacggauuccggcgcgcccggggguugguaaugggugc                                                                                              g
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                               
cggccugcagugccguacugcugagugccgcacugcgacuugaacacugcuagcggcaaaauuaagcccccuggauauccguaaacaauugaguauuagcaaaauuuagcgaggccuagauaucgcucgacccacgcccgcugguagcgcgagcucgacguugagcgggcccguggacguuucgagccgcucgugguagcaauuuaugaagcaugguaagauagagacguggauuugcgcacgucgacucaggcgcgcgccggggagcgacggcuacggcccccgcggggggcgcggacaggggcggaggggaGGUGCCUAAGGCCGCGCGGGCccccaaccauuacccacg                                                                                              g
                                                                                                                                                                                                                                                                                                                                                                gcccggaggcuagagaacguaagcgcaguuagccgucgcggggggugcccaacgucggcacgaaucggcgucguucacugacgucguccccacg 

>cre-MIR915 (-248.30)   [cre-miR915:109-129]

                 c                g  -                 c            a            a       a          a    c                           u g  cc  u 
caacgcugccgcggagg gcucggcguggacggg ac gagcucggcgaccuucu uuuacgcugucg aacuaucggagg gcagcuc aauucuuucc auag cgcUGGCAAUAAGGCAAUCGUUGCguu g gu  uc c
||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||| | ||  || g
guugcgacggcgccucc cgagccgcaccugccc ug cucgagccgcuggaaga aaaugcgacagc uugauagccucc cgucgag uuaagaaagg uauc gcgacuguuauuccguuagcaacgcaa c cg  ag c
                 -                g  g                 a            c            c       c          c    c                           - g  uc  a 

>cre-MIR919 (-217.80)   [cre-miR919.2:27-47] [cre-miR919.1:177-197]

                                     C    -  AC  u         a  uc                       u                   a     a         c       a 
aaugcgggacgucugcgccgcacaugUCUCAGGAGGA AUCG CC  Ua uagcaagcu cu  aggguaucucggucagcauuucg uuggcaagauguccgcuuc gguac cgccgcuca gcgauga g
||||||||||||||||||||||||||||||||||||| |||| ||  || ||||||||| ||  ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||| g
uuaugcucugcagacguggcguguacagaguccuucu uagc gg  au aucguucga ga  ucccaUAGAGCCAGUCGUAGAGC AAccguucugcaggugagg ccaug gcggcgagu cgcuacu c
                                     c    a  -c  c         c  cc                       U                   c     c         a       g 

>cre-MIR917 (-550.90)   [cre-miR917:203-222]

                g                                                                                                                                                               g                                                      a  a                a  -cca             g 
gcagcaacggcuccca agcugaccaaugaggccauugacaaccgccugccgauucucuuugaagaaggcgagcgacuugucgcccgaauacagcgcccgaaauuuugucacgauccagucaccggcgugcgcuucgaugugcuguaacacaggucgcggcguagcuacucuuaag ccucaaccaaagggccuuugcggcgUUUCACGGUUAUGUUCGAAGucgguacua ca ucugaaccaaagucgg gc    agucugaaccaaa u
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||    |||||||||||||  
cgucguugccgagggu ucgacugguuacuccgguaacuguuggcggacggcuaagagaaacuucuuccgcucgcugaacagcgggcuuaugucgcgggcuuuaaaacagugcuaggucaguggccgcacgcgaagcuacacgacauuguguccagcgccgcaucgaugagaauuc ggaguugguuucccggaaacgccgcaaagugccaauacaagcuucagccgugau gu agacuugguuucagcc ug    ucagacuugguuu c
                g                                                                                                                                                               a                                                      c  c                g  auug             g 

>cre-MIR916 (-639.17)   [cre-miR916:110-130]

       c                     g                         u        c                                                                                                  c  cc      c   ac    acgagaggccuuaaggauguaaggccuauaugccuggucggacgggcggucagacgacauuuggggguucgggggcgcucggggcuauguauguuguggugggaguccugucaugguauuggggauggaaaggcacacagacgggaaacaugcaaagcuguggaggguauggauaagccgcugcaugaaccacauaacuguggagggcagccgcugcaaguacugcauuuugcuugugcagguaacugcacuaccagccgugacuaccagcccgcagauag 
acggaaa gguuguacggggcgccguacg ugguugugggagaggggggggcugg ggauauga gugggccuguuagcucaguugguuagagcguggugcuaauaacgCCAAGGUCAUCGGUUCGAUCCcgauacgggccagcggaagccuuuugggccacg gc  acgcug aau  gcgc                                                                                                                                                                                                                                                                                         c
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||| |||  ||||                                                                                                                                                                                                                                                                                          
ugccuuu ccaacaugccucgcggcaugc accaacacccucuccccccccgacu ccuauacu cacccggacaaucgagucaaccaaucucgcaccacgauuauugcgguuccaguagccaagcuagggcuaugcccggucgccuucggaaaacccggugu ug  ugcgac uug  cgcg                                                                                                                                                                                                                                                                                         c
       a                     g                         c        a                                                                                                  c  ac      a   ca    cccguuccggguuuuccauaaacggaccauccugccugccgguuuguaauaaaccucccagccccggcgagcuccaacacaugcaacaccacccucaccccaccggagaaucgucuuucgucauaccaccgcaacaccuagugucggcaacaacaaaagggaacaagaaccacccggucaacguacggucuucccguacccuuccggugaggaaaacuaacaccaaccgugccguuacuugucgugucuuguuacguagacgaucguaugacgaacgugua 

>hsa-mir-920 (-29.60)   [hsa-miR-920:51-70]

---  ag     -      aaga      -     agga 
   gu  uuguu cuacag    ccugga ugugu    g
   ||  ||||| ||||||    |||||| |||||     
   ca  GACGA GGUGUC    GGaccu acaca    c
gca  AU     A      GAGG      c     gaau 

>hsa-mir-921 (-21.80)   [hsa-miR-921:2-26]

a       GGGA   AA   -     Cag 
 CUAGUGA    CAG  CCA GGAUU   a
 |||||||    |||  ||| |||||    
 ggucacu    guc  ggu ccugg   c
-       --ag   cg   a     acu 

>hsa-mir-922 (-28.30)   [hsa-miR-922:57-79]

       uu   --c    -c    ----   ggac      cag 
auggcgu  ucc   ucuc  cugu    ccu    uggggu   a
|||||||  |||   ||||  ||||    |||    ||||||    
uaCUGCA  AGG   AGAG  GACG    gga    gccccg   c
       UC   AUA    AC    aaga   ----      ugu 

>hsa-mir-924 (-12.30)   [hsa-miR-924:4-23]

--aa    G   ----  U    -    G 
    uAGA UCU    UG GAUG UCUU C
    |||| |||    || |||| |||| u
    aucu aga    ac cuac ggga u
caac    g   ucca  -    c    a 

>hsa-mir-509-3 (-37.70)   [hsa-miR-509-3-5p:10-31] [hsa-miR-509-3p:44-65]

-- ug    c   - UG        G       --G  u 
  g  guac cUA C  CAGACGUG CAAUCAU   ua a
  |  |||| ||| |  |||||||| |||||||   ||  
  c  caug GAU G  GUCUGCAU GUUAGUa   au a
ua gu    a   G GU        G       aaa  u 

>rrv-miR-rR1-1 (-47.10)   [rrv-miR-rR1-1:14-36] [rrv-miR-rR1-1*:46-64]

    ca     cgC       -    --       C     
gggu  gaccc   GAUCGCA CCUU  UGGCCGG CGGc 
||||  |||||   ||||||| ||||  ||||||| ||| c
ccca  cuggg   CUGGCGU GGAG  ACCGGcc gucu 
    ag     uaa       A    CC       c     

>rrv-miR-rR1-2 (-44.10)   [rrv-miR-rR1-2:54-74]

     u   -g     a   u     cc       ---   g 
cagcc ccc  cgacc ugc gcgcc  guauucg   ugc g
||||| |||  ||||| ||| |||||  |||||||   ||| a
guugg ggg  GUUGG ACG CGCGG  UAuaagc   acg a
     c   AG     C   U     CA       uua   g 

>rrv-miR-rR1-3 (-46.90)   [rrv-miR-rR1-3:6-24]

cag   -C GA  A     U    C      a      cu        uguu 
   ggC  C  UG GCAGU AGUC guguuu gucgcg  cccuguug    u
   |||  |  || ||||| |||| |||||| ||||||  ||||||||     
   ccg  g  ac cgucg uuag cacaga cagcgu  gggacaau    a
uug   cu aa  c     c    u      -      uu        uuaa 

>rrv-miR-rR1-4 (-55.40)   [rrv-miR-rR1-4:14-35] [rrv-miR-rR1-4*:64-85]

   u  u       G           C    C   ---------     gu 
ccg gu gugauuU GGGAGGGCGGU AGCG GCG         uuccc  g
||| || ||||||| ||||||||||| |||| |||         |||||  u
ggc cg cauuAGA CCCUCCCGCCA UUGC Cgc         aaggg  u
   u  u       G           A    U   uauauguau     au 

>rrv-miR-rR1-5 (-43.70)   [rrv-miR-rR1-5:14-37]

          cccC     C       C         ug   u 
caucguaacg    CGGAA CCAAAGA ACGUGCCCG  guc u
||||||||||    ||||| ||||||| |||||||||  |||  
guagcauugc    gccuu gguuucu ugugcgggc  uag a
          -ucu     a       -         --   a 

>rrv-miR-rR1-6 (-36.00)   [rrv-miR-rR1-6:10-32] [rrv-miR-rR1-6*:45-65]

         C      A        CA     aaau 
gcggugaac GCGGAA GGUGUGCA  UCGUA    c
||||||||| |||||| ||||||||  |||||     
cgucauuUG CGCUUU CCGCAUGU  AGCgu    a
         A      C        --     cauc 

>rrv-miR-rR1-7 (-40.20)   [rrv-miR-rR1-7-5p:10-32] [rrv-miR-rR1-7-3p:50-70]

u c     g           UA       UUC   ucaa 
 g gauuc UGGAGAGCAGU  ACGUGCG   ccg    u
 | ||||| |||||||||||  |||||||   |||    u
 c cuagg AUCUCUCGUUA  UGCACGC   ggc    a
a c     G           GC       ---   caua 

>cgr-mir-21 (-43.60)   [cgr-miR-21:18-39]

u      ccu      gU        A     A     A    u a 
 guacca   ugucgg  AGCUUAUC GACUG UGUUG cugu g a
 ||||||   ||||||  |||||||| ||||| ||||| |||| | u
 uauggu   acaguc  ucggguag cugac acaac ggua c c
c      uuu      ug        -     g     -    - u 

>ame-let-7 (-44.60)   [ame-let-7:13-33]

---a     c     U   G                a  gaauggaaauuc 
    cgaug cuggg GAG UAGUAGGUUGUAUAGU gg            g
    ||||| ||||| ||| |||||||||||||||| ||             
    gcugc ggccc uuc aucguucaacauguca cc            c
cgca     u     u   a                -  ugaagcauauag 

>ame-mir-10-1 (-39.50)   [ame-miR-10:22-42]

ccc    ---a    u      cu   -  G    U           ugau 
   aguu    augc cuacau  ACC CU UAGA CCGAAUUUGUu    a
   ||||    |||| ||||||  ||| || |||| |||||||||||    a
   ucga    uacg ggugug  ugg ga aucu ggcuuaaacag    g
-ca    gaca    u      uu   a  g    u           cgga 

>ame-mir-100 (-31.33)   [ame-miR-100:19-40]

--   aua      g   cuA   C      CC  A       gcuuuuu 
  gcu   cuugau aua   ACC GUAGAU  GA CUUGUGg       u
  |||   |||||| |||   ||| ||||||  || |||||||       a
  cga   ggacug ugu   ugg caucua  cu gaacgcc       u
ua   -cc      a   aca   c      uc  c       auaugua 

>ame-mir-137 (-40.40)   [ame-miR-137:60-81]

gacuucaua        ug  g   c       ug  g   u    - a a 
         ggccaggu  gc acg guauucu  gg aau aaca c c u
         ||||||||  || ||| |||||||  || ||| |||| | |  
         cugguccg  ug UGC CAUAAGA  UC UUA UUgu g g u
--ucacuug        uu  A   A       GU  G   -    c c u 

>ame-mir-13a (-38.90)   [ame-miR-13a:64-84]

accgaaaugaaaauacc        u    -ua       u         a   uuu 
                 uuuugcgg ccga   caucaaa ugguugugg aug   c
                 |||||||| ||||   ||||||| ||||||||| |||    
                 aagacgcc gguu   GUAGUUU ACCGACACU Uac   g
---------------cu        c    cGA       U         A   uga 

>ame-mir-14 (-43.10)   [ame-miR-14:64-84]

cuuuuucucg     u     a       u      cu    u    c  ugu 
          gucgc agguc guggggg gagaaa  ggcu ggcu uc   g
          ||||| ||||| ||||||| ||||||  |||| |||| ||    
          cagcg uucgg uAUCCUC CUCUUU  CUGA CUga ag   c
-------aua     u     c       U      UU    -    u  cau 

>ame-mir-2-3 (-36.70)   [ame-miR-2:61-83]

aaauaucccc    aa      gc    a -              u  c    ag 
          ggac  ggacau  uuuu c caucaaaguugguu gu auag  a
          ||||  ||||||  |||| | |||||||||||||| || ||||  u
          ucug  ccugug  aaaa G GUAGUUUCGACCGA CA UAUc  c
---------a    --      uu    C A              -  C    ag 

>ame-mir-275 (-48.50)   [ame-miR-275:67-89]

aaacguuacuug    g    a           -         ua     ugc aa 
            ucgu cgca cgcgcguuacu cggguacuu  ggcug   c  u
            |||| |||| ||||||||||| |||||||||  |||||   |   
            agcg gcgu GCGCGCGAUGA GUCCAUGGA  CUgac   g  u
----------aa    -    c           A         --     uaa cu 

>ame-mir-279 (-36.40)   [ame-miR-279:67-88]

agaaaaugaaaaaauuu       u   ca        aa        g     aaa 
                 ccugaau ugc  aaugagug  ggucuagu cacag   a
                 ||||||| |||  ||||||||  |||||||| |||||   u
                 ggacuug aug  UUACUCAC  CUAGAUCA GUguu   g
----------------u       c   AA        AC        -     aaa 

>ame-mir-283 (-38.30)   [ame-miR-283:21-40]

---aauaa  ug  ga       AA        U  U         a  uug 
        uc  gu  uguaguc  AUAUCAGC GG AAUUCUggg uu   a
        ||  ||  |||||||  |||||||| || ||||||||| ||    
        ag  ca  gcaucgg  uauggucg uc uuaggaccc aa   c
ccgcuagc  gu  -a       cc        u  -         -  uaa 

>ame-mir-29b (-36.80)   [ame-miR-29b:67-86]

auuuaaagacaa        ua a        c   -u   c         uu gu 
            uaagaaga  g gguacuga uuc  aug gugcugggg  u  g
            ||||||||  | |||||||| |||  ||| |||||||||  |  c
            auucuucu  c ucaUGACU AAG  UAC CACGAUccu  a  u
-----------g        -- a        A   UU   -         cu aa 

>ame-mir-31a (-40.94)   [ame-miR-31a:28-49]

aucacgauucuaa       cc   -aa   AA     C           ugcgau 
             cugggcg  ucg   GGC  GAUGU GGCAUAGCUGA      u
             |||||||  |||   |||  ||||| |||||||||||       
             gacucgc  agc   ccg  cuaca cugugucggcu      u
-----------ca       -a   caa   ac     -           uaaaau 

>ame-mir-33 (-33.70)   [ame-miR-33:31-49]

uauuuauuugauugcuuac         cu  -         UU C        aaa 
                   cuguuacaa  GU GCAUUGUAG  G AUUGcaug   u
                   |||||||||  || |||||||||  | ||||||||   a
                   gacgguguu  ca cgugacauc  c uaacguau   u
----------------uua         cu  a         uu a        caa 

>ame-mir-34 (-47.20)   [ame-miR-34:21-42]

uuu           g    uUG         U    U         -  ua 
   uuuugcgauug caug   GCAGUGUUG UAGC GGUUGugug gc  c
   ||||||||||| ||||   ||||||||| |||| ||||||||| ||   
   gggaugcuagc guau   cgucacggc aucg ccagcauau ug  a
--u           a    uaa         u    -         a  uu 

>ame-mir-375 (-34.90)   [ame-miR-375:63-84]

aucgauugaauua           ca    u  u     uca          c 
             ucaguuuggug  ucga cc aacga   acaaacuuuu a
             |||||||||||  |||| || |||||   |||||||||| c
             agucaaacuAU  AGCU GG UUGCU   UGUUUgaaag u
------guaggua           UG    C  C     ---          u 

>ame-mir-71 (-46.80)   [ame-miR-71:25-43]

guccuccuuc        u   uc         U              ucuca 
          gggcggau ccg  UGAAAGACA GGGUAGUGAgaugu     c
          |||||||| |||  ||||||||| ||||||||||||||      
          cuugcuug ggc  acuuucugu ucuaucacucugcg     g
-------cgu        c   cu         -              cuauc 

>ame-mir-79 (-39.20)   [ame-miR-79:67-87]

uucaagacugucaaa   uu   -    a          a     c         a 
               gcu  ugc cuuu cuuugguaau uagcu uaugauuuu a
               |||  ||| |||| |||||||||| ||||| ||||||||| u
               cga  acg gaaA GAAACCAUUA AUCGA AUacuagga u
--------------a   uc   a    C          G     A         a 

>ame-mir-87-1 (-39.20)   [ame-miR-87:70-89]

aca      u              -    uuu    ggcccucgugcucuc 
   guacuc uacgccugaaauuu gcuu   accu               u
   |||||| |||||||||||||| ||||   ||||                
   cgugag gUGUGGACUUUGAA CGAG   UGga               u
uug      u              A    ---    aauaaaagaguuuca 

>ame-mir-87-2 (-47.03)   [ame-miR-87:70-89]

uauaaagcauccgaac          g      cu        u     uaucuuu 
                guuacgggcg gccuga  cuuugcuc gcccg       u
                |||||||||| ||||||  |||||||| |||||       u
                cagugccugU UGGACU  GAAACGAG UGggu       u
--------------ga          G      UU        -     cucaccu 

>ame-mir-92a (-38.90)   [ame-miR-92a:64-84]

-u   uu     agaa         a   uu   a       ucgu   ga 
  uau  ugcau    gauaggccg gau  gug caauguu    gau  u
  |||  |||||    ||||||||| |||  ||| |||||||    |||   
  aua  acgua    cUAUCCGGC CUG  CAC GUUAuaa    cua  g
uu   uu     -agg         C   UU   -       -cuu   au 

>ame-mir-927 (-32.70)   [ame-miR-927:21-43]

-agauaaaagc   -              A   CU       A   a gu 
           gug guauuugUUUUAGA UUC  ACGCUUU CCg u  u
           ||| |||||||||||||| |||  ||||||| ||| |   
           uac cguaagcaaagucu aag  ugcgaaa ggu a  c
cuacuuccaaa   g              a   uu       c   g ag 

>ame-mir-928 (-30.30)   [ame-miR-928:12-32]

    a  -----    CU   U    AA     CGAAcgucacccaguccccg 
gucc gu     auuc  GGC GUGG  GCUGG                    u
|||| ||     ||||  ||| ||||  |||||                     
cagg cg     uaag  ccg cgcc  cgacc                    a
    g  uugau    -u   -    -a     auaaccagguguccauugac 

>ame-mir-190 (-37.50)   [ame-miR-190:25-50]

caaacaagucg    gu u      -            AU         U   u 
           ucug  u ccguaA GAUAUGUUUGAU  UCUUGGUUG Uuu u
           ||||  | |||||| ||||||||||||  ||||||||| ||| a
           agac  g gguauu uuauacaaacua  aggaccagc aag a
--------aaa    ug u      a            --         u   a 

>ame-mir-929 (-45.90)   [ame-miR-929:17-37]

-----------a     cu       aA         G         -  ugcau 
            cuuaa  gggguca  UUGACUCUA UAGGGAGUC Cc     u
            |||||  |||||||  ||||||||| ||||||||| ||      
            gaauu  ccucagu  gacugagau auccuucag gg     c
aggcaacuugca     uu       cg         a         c  uauaa 

>ame-mir-932 (-46.90)   [ame-miR-932:16-37]

cau    uu   u     A     UA    A      a ga  g    aa 
   cgcg  gcc cuUCA UUCCG  GUGC UUGCAG u  uu uucg  u
   ||||  ||| ||||| |||||  |||| |||||| |  || ||||   
   gcgc  cgg ggagu agggc  cacg aacguc a  aa gagc  u
-cu    uc   u     g     gc    -      c ag  a    ag 

>hsa-mir-933 (-35.40)   [hsa-miR-933:47-68]

   -     caguuc       -   g g       u ga 
acu ugggu      agagguc cuc g gcgcgcg c  g
||| |||||      ||||||| ||| | ||||||| |   
uga accca      UCUCCAG GGG C CGUGUgc g  u
   c     ---CCC       A   A G       c ac 

>hsa-mir-934 (-53.90)   [hsa-miR-934:15-36]

                    C          A    uagu 
agaaauaaggcuucUGUCUA UACUGGAGAC CUGG    a
|||||||||||||||||||| |||||||||| ||||    u
ucuuuauuccgagggcaggu augaccucug gacc    a
                    a          a    caaa 

>hsa-mir-935 (-61.40)   [hsa-miR-935:56-78]

         gcg      a             ccc  c   caucc 
ggcgggggc   ggcggc guggcgggagcgg   cu ggc     u
|||||||||   |||||| |||||||||||||   || |||      
ucgcccucg   ccgcCG CAUCGCCUUCGCC   GA Ccg     c
         ---      C             AUU  C   ucugc 

>hsa-mir-936 (-34.81)   [hsa-miR-936:15-36]

ucaa     cu     -------        -    AA  G   -aaa  a u 
    ggcca  gggAC       AGUAGAGG GAGG  UC CAG    uc c c
    |||||  |||||       |||||||| ||||  || |||    || |  
    ccggu  uccug       ucaucuuc uucc  ag guc    ag g c
agac     cg     gaccauu        g    ag  a   aacg  - a 

>hsa-mir-937 (-36.60)   [hsa-miR-937:51-72]

   -a    ----ccc   u           g  c   cccccu  u 
agc  cugc       cgg gagucagggug gg ugg      gc u
|||  ||||       ||| ||||||||||| || |||      || c
ucg  gacg       GUC CUCAGUCUCGC CC Acc      cg g
   ag    uccacCC   U           G  U   ------  u 

>hsa-mir-938 (-37.20)   [hsa-miR-938:15-36]

            u  GCC          A   - A  g  cc 
gaagguguacca gU   CUUAAAGGUG ACC C GU ca  u
|||||||||||| ||   |||||||||| ||| | || ||   
cuuccguauggu ca   gaauuuccac ugg g ca gu  u
            u  --a          a   u c  a  ac 

>hsa-mir-939 (-59.20)   [hsa-miR-939:15-38]

u    gca    c         U     U UG   GU   c 
 gugg   gggc cUGGGGAGC GAGGC C  GGG  Ggc g
 ||||   |||| ||||||||| ||||| |  |||  |||  
 cgcc   ucug gaccccucg cuccg g  ccc  ucg g
g    -ag    u         u     - gu   ag   g 

>hsa-mir-940 (-54.00)   [hsa-miR-940:60-80]

   a   g         cccca         -   gg  -ag  --  gug 
gug ggu ugggcccgg     ggagcgggg ccu  gc   cc  cc   u
||| ||| |||||||||     ||||||||| |||  ||   ||  ||   g
cac cca guccgggCC     CCUCGCCCC GGG  CG   gg  gg   u
   c   -         -----         C   -A  GAA  aa  agu 

>hsa-mir-941-1 (-54.30)   [hsa-miR-941:55-77]

     -  g  u  -        c  g    c   aca   -  a g 
cccgg cu ug gg acaugugc ca ggcc ggg   gcg cc c g
||||| || || || |||||||| || |||| |||   ||| || |  
gggcc gg ac cC UGUACACG GU UCGG CCC   Cgc gg g a
     c  g  -  G        U  G    -   --A   a  a a 

>hsa-mir-941-2 (-57.90)   [hsa-miR-941:55-77]

     -  g  u          c  g    c   aca   -  a g 
cccgg cu ug gcacaugugc ca ggcc ggg   gcg cc c g
||||| || || |||||||||| || |||| |||   ||| || |  
gggcc gg ac CGUGUACACG GU UCGG CCC   Cgc gg g a
     c  g  c          U  G    -   --A   a  a a 

>hsa-mir-941-3 (-57.90)   [hsa-miR-941:55-77]

     -  g  u          c  g    c   aca   -  a g 
cccgg cu ug gcacaugugc ca ggcc ggg   gcg cc c g
||||| || || |||||||||| || |||| |||   ||| || |  
gggcc gg ac CGUGUACACG GU UCGG CCC   Cgc gg g a
     c  g  c          U  G    -   --A   a  a a 

>hsa-mir-941-4 (-53.80)   [hsa-miR-941:60-82]

acgcaccc    g  u          c  g    c   aca   -  a g 
        ggcu ug gcacaugugc ca ggcc ggg   gcg cc c g
        |||| || |||||||||| || |||| |||   ||| || |  
        ccgg ac CGUGUACACG GU UCGG CCC   Cgc gg g a
-------c    g  c          U  G    -   --A   a  a a 

>hsa-mir-942 (-56.44)   [hsa-miR-942:13-34]

            U                       uacuca 
auuaggagagua CUUCUCUGUUUUGGCCAUGUGug      c
|||||||||||| |||||||||||||||||||||||       
uaauccuuucau gaagagacaaagccgguacacac      a
            u                       uccccg 

>hsa-mir-943 (-43.30)   [hsa-miR-943:55-75]

    c   -c    cuc    -         uuu  --      cu  ug 
ggga guu  ugag   gggg ugggggacg   gc  cgguca  gc  c
|||| |||  ||||   |||| |||||||||   ||  ||||||  ||  u
cccu cgg  acuc   cccc ACCUCCUGC   CG  GUCAGU  cg  g
    a   aa    --a    G         ---  UU      Cc  cg 

>hsa-mir-944 (-45.60)   [hsa-miR-944:54-75]

            u          a       u      aaauu 
guuccagacaca cucaucugau uacaaua uuucuu     g
|||||||||||| |||||||||| ||||||| ||||||      
uagggucugugu GAGUAGGCUA AUGUUAU AAAgag     u
            c          C       U      aaaua 

>bna-MIR156a (-40.20)   [bna-miR156a:1-21]

-        -   -         A   ---      uc    u 
 UGACAGAA GAG AGUGAGCAC caa   aaguaa  ugca a
 |||||||| ||| ||||||||| |||   ||||||  |||| u
 acugucuu cuc ucacucgug guu   uucguu  acgu a
g        u   g         c   cuc      -u    c 

>bna-MIR171g (-30.90)   [bna-miR171g:58-79]

--         c       c      uacacacgu    uaugc 
  gauauuggc ugguuca ucagau         acua     a
  ||||||||| ||||||| ||||||         ||||      
  CUAUAACCG GCCGAGU AGUcua         ugau     u
cU         C       U      --------u    ucucu 

>bna-MIR393 (-41.50)   [bna-miR393:1-21]

   A            U     ---u   c    ugaguuauucccgaauaauuauuuuaauuu 
UCC AAGGGAUCGCAU GAUCc    aau aagc                              u
||| |||||||||||| |||||    ||| ||||                              u
agg uucucuagcgua cuagg    uug uucg                              u
   c            -     ccuu   c    uuuuaaaaaaaaaagauagaaagguaacuc 

>bna-MIR396a (-23.69)   [bna-miR396a:1-21]

            C    A    c     cauuuccc   uuuuas  c  -aa   aa 
UUCCACAGCUUU UUGA CUUu uuuuu        uua      ag ga   uua  u
|||||||||||| |||| |||| |||||        |||      || ||   |||   
agggugucgaaa aacu gaaa aaaaa        aau      uc cu   aau  a
            s    c    a     saucucac   uuacaa  u  aaa   ca 

>bna-MIR399 (-49.60)   [bna-miR399:81-101]

aca     a       a        a   -      uu     uu    ucu 
   gggca gaucucu uuggcaga aac cauuac  agauc  ugca   c
   ||||| ||||||| |||||||| ||| ||||||  |||||  ||||    
   CCCGU UUAGAGG AACCGUcu uug gugaug  uuuag  acgu   u
uGG     -       A        c   a      --     uu    cuu 

>hsa-mir-297 (-29.20)   [hsa-miR-297:4-24]

u u       U       -             a 
 g AUGUAUG GUGCAUG UGCAUGuaugugu u
 | ||||||| ||||||| |||||||||||||  
 c uauauac cauguau auguauauauaca a
a -       u       u             u 

>pta-MIR156a (-36.20)   [pta-miR156a:6-25]

          -G  A    G     C   -   c    c  g 
gaugaCAGAA  AU GAGA CACAU cgc uca augc gg a
||||||||||  || |||| ||||| ||| ||| |||| ||  
cuacugucuu  ua cucu gugua gug agu ugcg uc c
          ag  c    g     u   g   u    -  u 

>pta-MIR156b (-41.00)   [pta-miR156b:6-25]

          -GAUA         AC   -        c g 
gaugaCAGAA     GAGAGCACA  cgc ucagaugc g c
||||||||||     |||||||||  ||| |||||||| | a
cuacuguuuu     cucucgugu  gug aguuugcg c c
          aguug         au   g        u u 

>pta-MIR159a (-92.72)   [pta-miR159a:185-204]

    u  u                   cc  a  u   gc  c  ug  u  g  g   au        u     uc      cgugacucuccagcagccuga 
gaug gu ggagcucccuucaguccaa  aa gc ugu  ag gg  gu ca cu cug  ucaugcau cuacu  ccuguc                     a
|||| || |||||||||||||||||||  || || |||  || ||  || || || |||  |||||||| |||||  ||||||                     c
cuau cA CCUCGAGGGAAGUUAGGUU  uu cg aca  uc cu  ca gu ga gac  aguacgug gguga  ggacag                     a
    u  -                   cu  a  c   aa  a  gu  u  a  g   gc        u     ua      uacguccagcuaacuaacuaa 

>pta-MIR159b (-78.96)   [pta-miR159b:160-179]

uuacg                    cg      c ua   -  a    u a   g   gu     g  u   c        aau  ucgagg 
     gggagcuuucuucaguccaa  aaaggc g  uag gg ugau c acu cug  ucaug ac cua uaucuugu   cc      u
     ||||||||||||||||||||  |||||| |  ||| || |||| | ||| |||  ||||| || ||| ||||||||   ||      u
     CCCUCGAGAGAAGUUAGGUU  uuuuug c  auc cc guua g uga ggc  aguac ug ggu auagaacg   gg      c
aaaga                    ca      u gc   a  -    u c   g   ac     g  u   a        -gc  uuauga 

>pta-MIR159c (-34.80)   [pta-miR159c:49-69]

        aaug   c       -ga   u     -     u 
gaugugug    aug gggagcu   uuu gucca ggaaa g
||||||||    ||| |||||||   ||| ||||| ||||| u
uuacauac    uau CCCUCGA   AAG UAGGU Ccuuu c
        gaug   u       GGG   U     U     u 

>pta-MIR166a (-55.60)   [pta-miR166a:66-86]

u      a        uu      cu    uu         -      
 ugauug ggggaaug  gucugg  cgac  cauccggau uuggg 
 |||||| ||||||||  ||||||  ||||  ||||||||| |||| c
 gcuaac CCCCUUAC  CGGACC  GCUg  guaggcuug aaccu 
g      c        UU      AG    cc         u      

>pta-MIR166b (-63.80)   [pta-miR166b:90-110]

  c     u gg         c  c       ca   g   -  aaaacuu     a aa  ag 
gg agagu g  gugagggga ug agccugg  cga acc ug       uucug c  gc  c
|| ||||| |  ||||||||| || |||||||  ||| ||| ||       ||||| |  ||   
cc ucuca c  cacuCCCCU AC UCGGACC  GCU ugg ac       gagac g  cg  c
  u     - aa         U  U       AG   g   u  --gcacu     - gg  gg 

>pta-MIR166c (-66.30)   [pta-miR166c:12-32]

      cg       -   -A   U  A       -c  -    a   aaucgacagcagcuccuuuagccuuugaaaggaac 
accaau  aauCCGG ACC  GGC UC UCCCAGg  au cugg ccc                                   u
||||||  ||||||| |||  ||| || |||||||  || |||| |||                                   c
ugguug  uuagguu ugg  ucg ag gggguuc  ua gauc ggg                                   u
      ua       g   ag   u  -       uc  c    g   cgaccugaggacagauaucgucuccucuggaacug 

>pta-MIR171 (-51.50)   [pta-miR171:3-23]

u   -       -   GUC  U    ucuucaggcgaagccuccaccacuccaaaagaacugaaugcagguuuccgaugcaucaaucuc 
 gUG AUUGAGA CGA   CA AUCu                                                               a
 ||| ||||||| |||   || ||||                                                               g
 cac uagcucu guu   gu ugga                                                               u
a   a       u   auu  c    cccagaggagguagguuuguaccgccgugacagacaugggagguuguacuauaacagaucacg 

>pta-MIR319 (-87.00)   [pta-miR319:184-202]

gauaag              a     ga  u  g   u     aca  aca  uc    ---g       ca c   a       augcaggucgauugauugauu 
      uggagcucccuuca uccaa  aa gc ugu uagug   gu   uc  cugc    ucaugca  c acu uccuguc                     u
      |||||||||||||| |||||  || || ||| |||||   ||   ||  ||||    |||||||  | ||| |||||||                     g
      aCCUCGAGGGAAGU AGGUU  uu cg aca gucgc   ca   ag  gacg    aguacgu  g uga gggacag                     u
---aca              C     gg  u  a   c     cac  ---  uc    acua       aa a   a       gcacugagaggucgucggacu 

>pta-MIR390 (-34.00)   [pta-miR390:8-28]

     ug    C    AU          a  cc  cuu 
aauua  AAGC CAGG  GGAUAGCGCC gc  ca   g
|||||  |||| ||||  |||||||||| ||  ||   a
uuaau  uucg gucu  ccuaucgcgg ug  gu   a
     gu    a    -c          g  ac  uua 

>pta-MIR396 (-59.10)   [pta-miR396:17-37]

       gu   a           C              cg   acg     a      u 
gaaucuu  cau cuuUUCCACAG UUUCUUGAACUUua  ugu   ggacg ggagau c
|||||||  ||| ||||||||||| ||||||||||||||  |||   ||||| ||||||  
cuuagga  gua gaaaggguguc aaagaacuugaaau  gcg   ucugc ucuuua u
       ug   c           a              ua   ---     a      g 

>pta-MIR398 (-52.96)   [pta-miR398:89-109]

  c    g     u c  c    c     g         c      aauguaau   u  au 
ag agag agguu c ac gggg gaccu ggaacacgu uacauu        cuc ug  u
|| |||| ||||| | || |||| ||||| ||||||||| ||||||        ||| ||  u
uc ucuc uccga g uG CCCC CUGGA CCUUGUGUa guguaa        gag ac  c
  -    a     - c  A    A     A         a      -guguccu   u  cu 

>pta-MIR408 (-44.00)   [pta-miR408:64-84]

   a      c   u   g          u   uau     a 
gag caggga gag uag gcaugggagu gca   gcaga a
||| |||||| ||| ||| |||||||||| |||   |||||  
cuC GUCCCU CUC GUC CGUAuucuua cgu   cgucu c
   G      U   C   A          c   cuu     g 

>pta-MIR482a (-35.86)   [pta-miR482a:69-90]

    u    a    -     u      aa  uuaa      acucug 
gagg gugg agga uaggg aagacu  gg    ggagaa      c
|||| |||| |||| ||||| ||||||  ||    ||||||      u
uuCC UACC UCCU AUCCC UUCUga  cc    ucucuu      u
    U    C    C     -      --  -ucg      aauuac 

>pta-MIR482b (-39.82)   [pta-miR482b:69-90]

    u    a    -     u      a    -----------u      a 
gagg gugg agga uaggg aagacu gggu            aagcag a
|||| |||| |||| ||||| |||||| ||||            |||||| a
uuCC UACC UCCU AUCCC UUCUga cucg            uucguc c
    U    C    C     -      c    ucucuuaauuac      u 

>pta-MIR783 (-32.20)   [pta-miR783:64-84]

u  u   g        -    ug   -u      cuuuuucagauau 
 uc uuu agggaagg gagc  gcg  gcauuu             u
 || ||| |||||||| ||||  |||  ||||||             u
 ag aga uccCUUUU CUUG  CGU  CGUAga             c
a  u   g        A    GU   UU      accgcuugcguua 

>pta-MIR946a (-74.12)   [pta-miR946a*:14-34] [pta-miR946a:139-159]

    g -   ug a         -         -------          agaa          --uu     -      -------      cga 
caga u gua  g UGUGGAUAG AGAAGGGUU       AGUaaacggu    aacccauuua    guaug ucauug       gcuguu   g
|||| | |||  | ||||||||| |||||||||       ||||||||||    ||||||||||    ||||| ||||||       ||||||    
guuu a cau  u ACACCUAUC UCUUCCCGA       ucguuugucg    uuggguaaau    cauac gguagc       cgacga   a
    g u   gu A         C         Ccauguc          ---g          uacu     c      uuaaugu      auu 

>pta-MIR946b (-89.01)   [pta-miR946b:228-248]

    g -      a        u -       -------    a     uacaa            a   --auu        --   ucauu     cugu    ucaagcaacuguauuuugauggccacacucauug 
caga u guaugg uguggaua g gaagggu       uagu aacag     aacccauuuaau gag     ccaucgga  gca     guugg    uaga                                  a
|||| | |||||| |||||||| | |||||||       |||| |||||     |||||||||||| |||     ||||||||  |||     |||||    ||||                                   
guuu a cauguc ACACCUAU C CUUCCCG       aucg uuguc     uuggguaaauua cuc     gguaguuu  ugu     caacc    aucu                                  a
    g u      A        C U       ACcacuu    a     ---ca            -   guacc        ua   -ccgu     ---u    uuuucccgaccaauuuucguuuuguucguugggu 

>pta-MIR947 (-72.60)   [pta-miR947:116-137]

       a  c    c             ag     -      aaa  ---a           ca    gaa   u 
acgccua gg gcag agcagauucugau  aagac ucaggc   gc    uuuguuguugg  gguu   ugc u
||||||| || |||| |||||||||||||  ||||| ||||||   ||    |||||||||||  ||||   ||| u
ugcggau CU UGUC UUGUCUAAGGCUA  uucug gguccg   cg    gaacaauaacc  ccaa   acg c
       c  U    A             Cg     u      ---  gggg           -a    --g   g 

>pta-MIR948 (-133.00)   [pta-miR948:12-31]

---------------------------------------------------aagucaugaaaUCAGGCUGUGUGGGAUCCGGuaacgccacagagua    -  c            a                    a    a  gg  u 
                                                                                                 agau ag agcgucaaagug cuguaggcauugguggauaa guga gc  ua u
                                                                                                 |||| || |||||||||||| |||||||||||||||||||| |||| ||  ||  
                                                                                                 ucua uc uugcaguuucac gacauccguagccaccuguu cacu cg  gu g
uuggguacuuuugucccaaacauccuaggccauuacggcguuuuugucuacuguggcggaguccguaaccgccuccuucacuccggcaguauuuuag    c  -            c                    a    c  ga  a 

>pta-MIR949 (-70.80)   [pta-miR949:7-27]

  a  c            C                      -c     a     g 
ag gc UCUCCGGGAAUC AAUGCGCCuuccucuugaacgc  uuuca cgcgc u
|| || |||||||||||| ||||||||||||||||||||||  ||||| ||||| g
uc cg aggggccuuuag uuauguggaaggaggauuugcg  aaagu gcgug c
  c  a            -                      ca     -     u 

>pta-MIR950a (-41.50)   [pta-miR950a:18-37]

   a    a     a    A G   U             --cu  u 
gga ggug ucuuu caUC G UCC CGGUGGUUUAUug    ca c
||| |||| ||||| |||| | ||| |||||||||||||    || g
ccu ccac agaaa guag c agg gcuaccaaauaau    gu u
   -    g     a    c g   u             auuu  u 

>pta-MIR950b (-42.30)   [pta-miR950b:18-37]

   a    a     a    A G   U             --cu  u 
gga ggug ucuuu caUC G UCC CGGUGGUUUAUug    ca c
||| |||| ||||| |||| | ||| |||||||||||||    || g
ccu ccac agaaa guag c agg gcuaccaaauagc    gu u
   -    g     a    a g   u             auuu  u 

>pta-MIR951 (-44.60)   [pta-miR951:11-31]

       u           C U       A  aggguuugcuuuacguugg 
gaagcga ggUGUUCUUGA G CUGGACC Cg                   g
||||||| ||||||||||| | ||||||| ||                   c
uuucguu ccacaagaacu c gacuugg gc                   a
       u           a u       c  caucuacuaacaaagaagu 

>pta-MIR952a (-225.90)   [pta-miR952a:18-37]

      g     u       A    A  C       U   u    ac     gg        ag          cau   ca        a cuu   c    c      c  g              g        ac       -        c       cc        c   g  ca  gg     -c    gcc       a           -------- g 
gaacca uagcg auugAAC GAGC UG CGUUGGU gag aagu  gucaa  gacgaaac  aauuaauuuu   uaa  uuuuauua c   caa ucug cuuggc ua ggcaguuccugaag ucacauug  uggggcg ugauacaa gcguagu  gcugguug ugc ac  uu  gacuc  ccca   uauucuc gcugcaacauu        c c
|||||| ||||| ||||||| |||| || ||||||| ||| ||||  |||||  ||||||||  ||||||||||   |||  |||||||| |   ||| |||| |||||| || |||||||||||||| ||||||||  ||||||| |||||||| |||||||  |||||||| ||| ||  ||  |||||  ||||   ||||||| |||||||||||        |  
cuuggu gucgu uaacuug cucg ac guaacca cuc uuca  caguu  uuguuuug  uuaauuaaag   auu  aaaauaau g   guu agac gaaccg au ccguuaagggcuuc aguguggu  accccgc acuauguu cgcauua  cgaccaac acg ug  aa  cugag  gggu   auaagag cgacguuguga        g a
      a     u       a    c  a       c   c    ga     gg        cg          cuu   ac        c uac   u    c      u  a              g        ca       g        u       ac        a   g  cg  aa     aa    aaa       c           cauuuauu a 

>pta-MIR952b (-192.40)   [pta-miR952b:18-37]

      cuc   c           AA   C         gu     c     gg       ca            au   ca        a c  -       acc       a   a           g     gggcaaggacuagucugcugguugcugccacagucaauugggacucucccaaguuauucucagcugcagcauuccgaaguuau 
gaacua   gcg auugAACUGAG  UGC AUUGGUGga  aagua gucaa  gacgaaa  gaauuaauuuug  uaa  uuuuauua c uu caacucu   uuggcuu ugg aguucgugaag ucaca                                                                                   u
||||||   ||| |||||||||||  ||| |||||||||  ||||| |||||  |||||||  ||||||||||||  |||  |||||||| | || |||||||   ||||||| ||| ||||||||||| |||||                                                                                   c
cuuggu   cgu uaacuugauuc  acg uaaucgccu  uucau caguu  uuguuuu  cuuaauuaaaac  auu  aaaauaau g aa guugaga   aaccgaa acc ucaaguacuuu agugu                                                                                   a
      aau   u           gc   a         ac     a     gg       ac            gu   ac        c c  c       caa       g   g           g     ggucaaccccgugaguauguuccacauuagccgaccgacaacacugguuaccugacagggguauuauaagagccgacguugua 

>osa-MIR529b (-59.60)   [osa-miR529b:19-39]

         -     au         A   A            ---gc  uu    uguuagau    gaa  a 
aucgugaag gcuaa  ggAGAAGAG GAG GUACAGCUUugg     gg  uagu        ggug   gu c
||||||||| |||||  ||||||||| ||| ||||||||||||     ||  ||||        ||||   ||  
uaguauuuu cgauu  cuucuucuc cuc caugucggaacc     uc  auca        ccgc   cg u
         u     cu         c   g            acuuu  cc    -------u    -ag  u 

>dme-mir-iab-4as (-26.90)   [dme-miR-iab-4as-5p:6-28] [dme-miR-iab-4as-3p:44-65]

     UU            G    A  G  ua g 
ucgug  ACGUAUACUGAA GUAU CC ga  g a
|||||  |||||||||||| |||| || ||  |  
agcAU  UGCAUAUGACUU CAUA GG cu  c u
     -U            A    -  a  ca a 

>dme-mir-954 (-31.10)   [dme-miR-954:17-37]

ua   aca      uuUCU           -  U   Ua    u 
  caa   caagau     GGGUGUUGCGU UG GUG  ccug g
  |||   ||||||     ||||||||||| || |||  ||||  
  guu   guucua     ccuacaacgua ac uau  ggac u
ua   --c      cauuc           c  u   gc    a 

>dme-mir-955 (-26.80)   [dme-miR-955:18-40]

--ggcc   ua    a   C     G        U      Ccugu uu 
      agc  auca cuc AUCGU CAGAGGUU GAGUGU     g  u
      |||  |||| ||| ||||| |||||||| ||||||     |   
      ucg  uggu gag uggca gucuuuaa cuuacg     c  u
aaagau   ca    a   a     a        -      cuaau cg 

>dme-mir-190 (-34.10)   [dme-miR-190:24-47]

cgaacuaauu  u   uc      -            AU      U  uuu auu 
          ga ggu  cagugA GAUAUGUUUGAU  UCUUGG UG   c   c
          || |||  |||||| ||||||||||||  |||||| ||   |    
          cu cca  gucauu uuauacaaacua  aggacc ac   g   a
--------cg  c   gu      a            --      c  -uu aaa 

>dme-mir-193 (-33.12)   [dme-miR-193:73-94]

ugug   c         g         uu   au   c  -----------u   u   a 
    ugc cuuauuaug uugggauuu  uag  cag ag            uau gcu u
    ||| ||||||||| |||||||||  |||  ||| ||            ||| |||  
    aug gaguaauaC AACCCUGAA  AUC  GUC Uc            aua cga a
--aa   a         -         UC   CG   A  uucuaaauauuu   c   u 

>dme-mir-956 (-48.10)   [dme-miR-956:117-139]

gauc   a c   -u     a        uu     a  g  gag  a     c  cuc      ccaaaugcag 
    guu u gug  uugga uggucucg  agcua cg au   ca gugcu gg   acuggc          u
    ||| | |||  ||||| ||||||||  ||||| || ||   || ||||| ||   ||||||          u
    cga g UAC  AAUCU ACCAGAGC  UUgau gu ua   gu cacga cc   uggccg          u
uuua   c U   CU     C        -U     -  g  -aa  -     c  aau      cagaggcccg 

>dme-mir-957 (-33.30)   [dme-miR-957:61-82]

-u   -    aua a          c    u    ug  gugcug    gu 
  guc caca   g ccuuaguuuu gacg guuu  gu      ggga  u
  ||| ||||   | |||||||||| |||| ||||  ||      ||||   
  cgg gugu   c GGAGUCAAAA CUGC CAAA  ua      ccuu  c
cg   a    caa C          C    -    GU  -----g    au 

>dme-mir-958 (-27.60)   [dme-miR-958:58-79]

--  c    cua   c           c   cuua     u  uuaau 
  gg gugu   ugg aaguagaauag agg    ucaca gu     u
  || ||||   ||| ||||||||||| |||    ||||| ||      
  cc caca   gcU UUCAUCUUAUC UCU    AGUgu cg     c
ug  -    aca   -           U   -UAG     -  ucuaa 

>dme-mir-375 (-36.20)   [dme-miR-375:55-76]

--c      gc   --uu            g  au       guga  a 
   cgggca  gaa    acuugggccaag ga  gcaaacu    uc u
   ||||||  |||    |||||||||||| ||  |||||||    || c
   gccugu  cuu    UGAAUUCGGUUU CU  UGUUUga    ag c
uca      -a   uuAU            G  --       ---a  c 

>dme-mir-959 (-29.20)   [dme-miR-959:61-82]

uuaa     uu       - u        gg u        --a    uu 
    cuuug  cuauauu c uaguacuc  g ugauaaag   ccuu  c
    |||||  ||||||| | ||||||||  | ||||||||   ||||   
    gaaau  gauauaA G AUUAUGGG  C ACUGUUuc   ggga  u
-aaa     uu       A U        GG U        cga    cu 

>dme-mir-960 (-32.80)   [dme-miR-960:19-40]

g     u      ca  cU    A          C     uu  ug 
 gguuu guacca  uu  GAGU UUCCAGAUUG AUAGC  ug  c
 ||||| ||||||  ||  |||| |||||||||| |||||  ||   
 cuaaa uauggu  aa  uuca agggucuggc uaucg  au  u
-     c      ac  uu    c          a     uu  ca 

>dme-mir-961 (-31.70)   [dme-miR-961:18-39]

ucaa   -       a c      CA    -U   U        uu 
    ggg ccgaguu c UUUGAU  CCAG  AAC GAGAUugu  c
    ||| ||||||| | ||||||  ||||  ||| ||||||||  u
    cuc gguucaa g aaacua  gguc  uug cuuuggca  g
--ag   a       - a      ac    uu   -        ua 

>dme-mir-962 (-33.60)   [dme-miR-962:18-42]

gau      cu    cuAU       A        UGCU    aca 
   ggggca  cagg    AAGGUAG GAAAUUGA    GUCu   c
   ||||||  ||||    ||||||| ||||||||    ||||   u
   ccccgu  guuu    uuccauu cuuugacu    caga   a
uac      uu    aacu       a        ---u    cuu 

>dme-mir-963 (-27.30)   [dme-miR-963:16-39]

-uua        uaa     -    A   U     U     cugua 
    gucuaauc   aACAA GGUA AUA CAGGU GUUUC     u
    ||||||||   ||||| |||| ||| ||||| |||||      
    cagguuag   uuguu ccau uau gucua caaag     u
aaaa        -cc     u    a   -     -     cuagc 

>dme-mir-964 (-31.62)   [dme-miR-964:26-47]

caauaacauau     --   c   c             AGC        uguuu 
           ugguc  caa uug cUUAGAAUAGGGG   UUAACUUa     u
           |||||  ||| ||| |||||||||||||   ||||||||     u
           acuag  guu aac gaaucuugucucc   aauugaau     g
-----------     ua   u   a             gaa        uugua 

>dme-mir-932 (-43.60)   [dme-miR-932:16-37]

-uu    - ug     u    U          A        u  uu 
   gguu u  aaguu UCAA UCCGUAGUGC UUGCAGug gu  c
   |||| |  ||||| |||| |||||||||| |||||||| ||   
   ccag a  uucaa gguu aggcgucgcg aacgucau ua  a
cuu    c gu     c    u          -        u  uu 

>dme-mir-965 (-36.43)   [dme-miR-965:66-87]

-- a     uu    -   a          u    -         a    ugcccuu 
  g caaua  gcuc aac uuuugggggg aaaa cuguacguu uaug       c
  | |||||  |||| ||| |||||||||| |||| ||||||||| ||||       u
  c guuau  cgag uug aaaaUUCCCC UUUU GAUAUGCGA AUac       g
aa -     --    a   -          -    C         -    uuauagu 

>dme-mir-966 (-43.50)   [dme-miR-966:16-36]

---aa  -  a     u    U       G     U     ugugg 
     cc ug uccgc gcUG GGGUUGU GGCUG GUGGc     u
     || || ||||| |||| ||||||| ||||| |||||      
     gg ac gggug cgac cccaaua uugac cgccg     a
accca  c  -     -    c       g     -     uggau 

>dme-mir-967 (-42.40)   [dme-miR-967:11-31]

---cuu      c          --C          c  ------ga    ac 
      ggagag AGAGAUACCU   UGGAGAAGCG gu        ccug  c
      |||||| ||||||||||   |||||||||| ||        ||||  c
      ucucuc ucucugugga   accuuuucgc ca        ggac  c
uauuuc      -          ucc          c  acccaaga    ga 

>dme-mir-1002 (-22.02)   [dme-miR-1002:15-38]

ua       ua  u        U -G      AGG     uugau 
  gaaauua  ua UUAAGUAG G  AUACAA   GCGAu     a
  |||||||  || |||||||| |  ||||||   |||||     u
  uuuuagu  au aauucauc c  uauguu   cgcug     a
ug       cg  c        - ag      --a     ugaaa 

>dme-mir-968 (-28.69)   [dme-miR-968:16-39]

-uga    a c   cuU        UC             uucucaa 
    ugga g uuc   AAGUAGUA  CAUUAAAGGGUUG       c
    |||| | |||   ||||||||  |||||||||||||        
    accu c aag   uucaucau  guaguuuuccaac       a
auug    - u   aau        --             uaaacgu 

>dme-mir-969 (-36.57)   [dme-miR-969:19-39]

     cu        uc       C  UAAG        gagaucgu 
agucu  guccuacg  cGAGUUC AC    CAAGUUUU        u
|||||  ||||||||  ||||||| ||    ||||||||         
ucagg  uagggugc  gcucgag ug    guucaaaa        u
     --        uu       u  caca        acaaaaau 

>dme-mir-970 (-31.30)   [dme-miR-970:61-81]

gaa     u u    c    a   g        uu      cug   u 
   aggca c guug agcu gcg guguuuua  ugguag   uaa g
   ||||| | |||| |||| ||| ||||||||  ||||||   |||  
   ucugu g caaU UCGG CGC CACAGAAU  ACUauc   guu a
gaa     u c    A    -   A        --      uaa   u 

>dme-mir-971 (-47.60)   [dme-miR-971:60-81]

uc  u        u            auu    u      a   -   u 
  cg ggcuggca cgcucgcuguaa   guaa caucaa gcg uuu c
  || |||||||| ||||||||||||   |||| |||||| ||| ||| u
  gc cugaccgu gugAGUGACAUU   CAUU GUGGUU cgc gag c
au  -        -            CUU    -      -   c   a 

>dme-mir-972 (-23.10)   [dme-miR-972:55-76]

agaa    -a       u  -         uuu         uaacu 
    ugau  gggaaau gc uaaauauuu   uuguauaaa     u
    ||||  ||||||| || |||||||||   |||||||||      
    acua  cucuuua CG AUUUAUAAG   AACAUGUuu     u
--aa    aa       -  G         CAU         ucaau 

>dme-mir-973 (-28.70)   [dme-miR-973:19-43]

a  --gu   c       c   G    U GU     UUC       -ag   u 
 cc    cgu gacuuuu gUG UUGG G  UGAAC   GAUUUUa   uau u
 ||    ||| ||||||| ||| |||| |  |||||   |||||||   |||  
 gg    gca uugaaga cac agcc c  acuug   cuaaagu   aua a
-  aaac   c       a   -    u uu     --u       aaa   a 

>dme-mir-974 (-27.70)   [dme-miR-974:25-46]

caauugucacc  u  u    u cA   GAG   A     A        guuu 
           gg ca gucc c  AGC   CAA GAAGU GUAUUugu    c
           || || |||| |  |||   ||| ||||| ||||||||     
           cc gu uagg g  ucg   guu cuuca uauaaacg    c
-------uaaa  c  u    u aa   aag   a     a        agaa 

>dme-mir-975 (-29.60)   [dme-miR-975:16-38]

--uu          u u     -   U        C     ---   u 
    gaauuuuuga u UAAAC ACU CCUACAUC UGUAU   gug u
    |||||||||| | ||||| ||| |||||||| |||||   ||| u
    uuuagagacu a guuug uga ggguguag acaug   uac u
acac          c c     c   -        -     gcc   g 

>dme-mir-976 (-43.76)   [dme-miR-976:60-81]

caucgcca        - g            ggccauc       gauua 
        ugcagugc c cggcauugguga       uccaaug     g
        |||||||| | ||||||||||||       |||||||     u
        acgucacg g gcCGUAACUACU       AGGUUac     u
----aucc        u -            AUUGAUU       aacuc 

>dme-mir-977 (-30.63)   [dme-miR-977:66-86]

cgaaucaacaa    gg    c          uc       a    uucagug 
           acaa  uaug uuuagauaac  gaauauc cauc       u
           ||||  |||| ||||||||||  ||||||| ||||       u
           uguu  guac aAAUCUGUUG  CUUAUAG GUag       c
----------a    uu    u          CA       A    ucuaaag 

>dme-mir-978 (-37.44)   [dme-miR-978:56-77]

guug   ---      u       c    c      cu    uugcaa 
    gcg   gcacaa cugcaau uacg cacugg  uacg      u
    |||   |||||| ||||||| |||| ||||||  ||||       
    cgc   uguguu GACGUUA AUGC GUGACC  GUgc      c
-aaa   aag      -       A    C      -U    uaaaag 

>dme-mir-979 (-40.10)   [dme-miR-979:60-80]

uacauguga            --uaca    a             cu   g 
         ggaugucacaaa      cuga uuuggggggaauu  uau u
         ||||||||||||      |||| |||||||||||||  |||  
         ccuacgguguuu      GACU AAGCCCUUCUUaa  aua a
-------ug            uAAUCG    C             ac   u 

>dme-mir-980 (-33.01)   [dme-miR-980:61-82]

---aguu          c          uu   cu       uuacuccu 
       gauuguaugu aguuuuucau  ggc  ggcuagc        u
       |||||||||| ||||||||||  |||  |||||||        u
       uuaaugugcA UCGGGAAGUG  CCG  UCGAUcg        u
cuugacg          U          UU   --       uuauaaau 

>dme-mir-981 (-39.20)   [dme-miR-981:61-82]

aaaca   u   u aagu          ua          -   uuaa 
     ucc cac g    cggguuucgu  gcagcgggcu guu    u
     ||| ||| |    ||||||||||  |||||||||| |||    a
     agg gug c    GUCCAAAGCA  UGUUGCUUga caa    a
-uaaa   u   u guAC          GC          a   cuua 

>dme-mir-982 (-24.00)   [dme-miR-982:16-38]

----c        g    a  CU   CA     G      --AU   uu 
     gaaaucau uuag UC  GGA  AAUAU AAGUAA    ugu  u
     |||||||| |||| ||  |||  ||||| ||||||    |||   
     uuuuggua aauc ag  ccu  uuaua uucauu    acg  u
cgaga        -    a  uu   ac     g      aacu   ua 

>dme-mir-983-1 (-25.00)   [dme-miR-983:18-39]

-uaua            a     A   UU GAA       uuuuc 
     uugcaauaauua AUAAU CGU  C   CUAAUGA     a
     |||||||||||| ||||| |||  |   |||||||      
     aauguuguugau uauua gca  g   gauuacu     g
uuaca            c     c   uu aug       uacuu 

>dme-mir-983-2 (-25.00)   [dme-miR-983:21-42]

---uauuaua            a     A   UU GAA       uuuuc 
          uugcaauaauua AUAAU CGU  C   CUAAUGA     a
          |||||||||||| ||||| |||  |   |||||||      
          aauguuguugau uauua gca  g   gauuacu     g
ucaacuuaca            c     c   uu aug       uacuu 

>dme-mir-984 (-28.80)   [dme-miR-984:16-38]

---a    ca      a     G     A        A  -Uu  cu 
    gaaa  aauuuc uUGAG UAAAU CGGUUGGA UU   gu  u
    ||||  |||||| ||||| ||||| |||||||| ||   ||   
    cuuu  uuaaag ggcuc guuua gccaaccu aa   ca  u
uuga    --      c     g     a        a  uau  au 

>dme-mir-927 (-35.44)   [dme-miR-927:16-37]

---   uug u    a            CU       A   uggcau 
   ugg   c guag guUUUAGAAUUC  ACGCUUU CCg      a
   |||   | |||| ||||||||||||  ||||||| |||       
   acc   g cauc caaagucuuagg  ugcgaaa ggc      c
auu   -ua c    c            uu       c   uuaaag 

>dme-mir-985 (-35.40)   [dme-miR-985:49-70]

---uau        a     g cu      u      c       
      auaauagc cugcu g  cauugg acauuu auaagu 
      |||||||| ||||| |  |||||| |||||| ||||| a
      uauuaucg gACGG C  GUAACC UGUAAA uauucc 
ccuguu        a     G UG      U      C       

>dme-mir-986 (-34.52)   [dme-miR-986:19-40]

caca  ug    u   caU  C       G    GA     guaacug    
    cc  aaau acc   CU GAAUAGC UUGU  CUGAg       cgc 
    ||  |||| |||   || ||||||| ||||  |||||       || a
    gg  uuua ugg   ga cuuaucg agcg  gacuc       gcu 
--cc  gu    u   aau  a       g    gc     -aucuaa    

>dme-mir-987 (-29.70)   [dme-miR-987:15-38]

-  - ug      gu  A        A     GAU       ag  gc 
 ug u  gacugu  uU AAGUAAAU GUCUG   UGAUGaa  uu  a
 || |  ||||||  || |||||||| |||||   |||||||  ||  u
 ac a  uugacg  aa uucauuua cggac   acuacuu  ga  u
a  a gu      uc  c        -     --a       aa  gc 

>dme-mir-988 (-31.10)   [dme-miR-988:62-83]

gacg    uaccggg      g      u a          ---a     aug 
    gcgg       cauuuu ggugug g uuuguagcaa    gugau   u
    ||||       |||||| |||||| | ||||||||||    |||||   a
    cguc       guagaa cCGCAC C AAACGUUGUU    uacua   u
--ag    -----ua      a      U C          CCCC     guu 

>dme-mir-989 (-62.40)   [dme-miR-989:139-159]

aaa     ug  a  cgg       c ug  g        ----------- g       a    -   c       -   auu   -ua   g 
   gauuu  gg au   ccacuac u  ca ucacguga           u aaaagac cagg uga acugauc cgg   ugg   guu a
   |||||  || ||   ||||||| |  || ||||||||           | ||||||| |||| ||| ||||||| |||   |||   |||  
   uuaaa  cc ua   GGUGAUG A  GU AGUGUacu           a uuuucug guuu acu ugauuag gcc   acc   uaa c
aca     gu  a  CAA       C GU  -        ugauaagcuua g       c    u   u       a   -gu   ucc   a 

>dme-mir-137 (-28.00)   [dme-miR-137:54-75]

---c      caa  gc -        g    u   u     --c  a 
    aaucuc   ug  c acguguau cucg agc auaac   ug a
    ||||||   ||  | |||||||| |||| ||| |||||   || a
    uuagag   ac  G UGCACAUA GAGU UCG UAUug   ac u
uugu      -cc  uu A        A    -   U     uaa  c 

>dme-mir-990 (-32.20)   [dme-miR-990:14-34]

uc     --u c  c  -U     -UU    --        - aag 
  ugcuc   g ga AU  CACCG   CUGA  GUUGGCCc c   u
  |||||   | || ||  |||||   ||||  |||||||| |    
  acgag   c cu ua  guggc   gacu  cgaccggg g   g
-c     ccc a  u  cc     uuc    uu        u cac 

>dme-mir-991 (-25.46)   [dme-miR-991:61-82]

uaucac     uu     c      c       c  a      cauauu 
      ugcag  ucagg uuuucc aacuaca cu uuaaua      u
      |||||  ||||| |||||| ||||||| || ||||||      u
      acguu  gguuu GAAAGG UUGAUGU GA AAUUau      a
----uu     uu     U      U       U  -      ccugca 

>dme-mir-992 (-27.90)   [dme-miR-992:53-74]

----      - c      c         caaa    uauu      gu 
    auuuuc c aagugc ugguaucag    gugu    uuuuau  u
    |||||| | |||||| |||||||||    ||||    ||||||   
    ugaaag g uucauG AUCAUGGUC    CACA    GAaaug  u
ccau      a c      A         UUUG    ---U      ua 

>dme-mir-929 (-50.40)   [dme-miR-929:52-72]

--ag    gg  g       a        ag         -   u 
    uccu  ug agcucaa uugacucu  uagggaguc cuu a
    ||||  || ||||||| ||||||||  ||||||||| |||  
    agga  ac ucgaGUU GACUGAGG  AUCCCUCag gag a
agcg    -a  g       A        CA         c   u 

>dme-mir-993 (-47.09)   [dme-miR-993:85-107]

aacg  -   -    cc    c     uuc          ----uuuaaa    -       a 
    cu ccc guga  uacc uguag   cgggcuuuug          uggc guucggc c
    || ||| ||||  |||| |||||   ||||||||||          |||| ||||||| a
    ga ggg cacU  AUGG ACAUC   GCUCGAAGac          gucg caggcug u
--aa  u   a    CU    -     UCU          uauuagcucg    u       u 

>dme-mir-994 (-33.25)   [dme-miR-994:12-33]

--uauc            -           C     uuuacccaag 
      gaguuauCUAAG GAAAUAGUAGC GUGAU          a
      |||||||||||| ||||||||||| |||||           
      cucgauagauuu cuuugucguug cacua          a
uguuuu            u           a     uacacuuuuu 

>dme-mir-995 (-44.00)   [dme-miR-995*:17-38] [dme-miR-995:55-75]

--ca    c   c  c    C           GA      cc   u 
    ccug acc cg agCC GAAUUAUGUGG  GCUGCG  guu c
    |||| ||| || |||| |||||||||||  ||||||  ||| c
    ggac ugg gc UCGG CUUAGUACACC  CGAUgc  uaa g
uaua    a   u  U    -           -A      -c   u 

>dme-mir-996 (-36.99)   [dme-miR-996:61-82]

u       u    u  c     a      -      g     ugguuca 
 cugacuc auuu gu ggcga caugga ucuagu cacgg       u
 ||||||| |||| || ||||| |||||| |||||| |||||        
 gacuggg ugaa ua CUGCU GUACUU AGAUCA GUgcu       g
-       u    u  U     C      U      -     ugaauua 

>dme-mir-252 (-34.60)   [dme-miR-252:16-37]

accaa  u      cC        A U  C       uuag   -  u 
     gu cgcuuu  UAAGUACU G GC GCAGGAG    guu cg g
     || ||||||  |||||||| | || |||||||    ||| ||  
     cg gcgaaa  auucguga c cg cguccuc    uaa gc u
-ugag  -      uu        a c  u       --ca   c  c 

>dme-mir-997 (-78.20)   [dme-miR-997:32-52]

uuaug     --ucu       aau        CC    C     G         c  ca          ag  --       a   a      c aaa     u   au 
     gaucc     uucaaug   uuaguaug  CAAA UCGAA GAGUUUCAc uc  uaagagcgac  uc  cuggaga guu ucagag c   aaaau cau  g
     |||||     |||||||   ||||||||  |||| ||||| ||||||||| ||  ||||||||||  ||  ||||||| ||| |||||| |   ||||| |||   
     cuagg     agguuac   aaucauac  guuu agcuu cucaaagug ag  auuuuuguug  ag  gacuucu caa agucuc g   uuuua gua  a
-acgg     uucgu       agc        ua    u     a         a  cg          -a  ac       g   a      u -cc     c   gu 

>dme-mir-998 (-43.44)   [dme-miR-998:100-120]

ccu     --c        u ug  a      u       gucugcacugacaacacugaccgcuccagggc 
   cgugu   aaauucau u  ga cugaau cucgugg                                a
   |||||   |||||||| |  || |||||| |||||||                                 
   guaca   uuuaagug g  CU GACUUA GAGUACC                                a
uac     aac        c gu  C      -       ACGAUgucuuaaaguuaaaguuuuacuuguua 

>dme-mir-999 (-40.80)   [dme-miR-999:62-83]

aa  a  cc   --        cc         a      g       u  au 
  gg ug  gcu  caauuacc  gacauaguc uacggu aauguug gu  u
  || ||  |||  ||||||||  ||||||||| |||||| ||||||| ||  g
  cc ac  cga  guuggugg  CUGUGUCAG AUGUCA UUGUaac ca  g
ca  g  -c   cc        cU         A      A       -  ga 

>dme-mir-1000 (-41.30)   [dme-miR-1000:15-35]

-------       gc  u  A  U       U A       --       ca 
       gacgcuu  ca ug UA UGUCCUG C CAGCAGU  auuguaa  c
       |||||||  || || || ||||||| | |||||||  |||||||  u
       cugcgag  gu ac au acggggc g gucguca  ugauauu  a
acgauua       uu  u  a  u       u g       uu       au 

>dme-mir-1001 (-45.00)   [dme-miR-1001:16-36]

-aa        -    cU     AACU          A  uggag 
   gcuggccu gucc  GGGUA    CCCAAGGAUC gg     a
   |||||||| ||||  |||||    |||||||||| ||      
   ugacugga cggg  cucgu    ggguuccuag cc     u
uga        a    cu     cuuu          c  uaagu 

>dme-mir-1003 (-20.60)   [dme-miR-1003:35-56]

--        c         uu  cu u 
  guggguau uggaugugg  gg  c g
  |||||||| |||||||||  ||  |  
  CACUUAUA AUUUACACU  cc  g g
GA        C         CU  ug c 

>dme-mir-1004 (-19.70)   [dme-miR-1004:47-68]

-gu       cau    c c     -c  --   u 
   uggggga   ugau u ggaga  gg  cgg u
   |||||||   |||| | |||||  ||  ||| u
   ACUCCCU   ACUA A UCUcu  cc  guc a
GAC       -UC    C C     ua  ua   a 

>dme-mir-1005 (-17.00)   [dme-miR-1005:41-61]

--         uc      g     ----   g 
  gugaguuga  gauuuc agguu    uug c
  |||||||||  |||||| |||||    ||| a
  CGCUUAAUU  CUAAGG UCUaa    agc c
GA         -U      -     uaua   a 

>dme-mir-1006 (-19.70)   [dme-miR-1006:42-64]

--      uu         augcg        u 
  gugagu  gaaauugaa     uaaauugu u
  ||||||  |||||||||     |||||||| g
  UACUUA  CUUUAGCUU     AUuuaaca g
GA      UU         ---AA        u 

>dme-mir-1007 (-20.00)   [dme-miR-1007:43-64]

--         -gu    a  cg   uu -   c 
  guaagcagu   uuga cu  auc  g guu u
  |||||||||   |||| ||  |||  | |||  
  CGUUUGUCA   AACU GA  Uag  c cag u
gA         AUU    C  -A   uu u   g 

>dme-mir-1008 (-20.00)   [dme-miR-1008:36-56]

--        cu       -a     g c 
  guaaauau  aaaguug  acuug c a
  ||||||||  |||||||  ||||| |  
  CAUUUGUG  UUUCGAC  Ugaac g a
gA        UU       AC     g u 

>dme-mir-1009 (-12.50)   [dme-miR-1009:39-61]

-- u        g c   c     u   c g 
  g aaguguaa a uuu uugag uac c c
  | |||||||| | ||| ||||| ||| | g
  C UUUACAUU U AAA AACUC aug g a
GA -        G U   -     U   a u 

>dme-mir-1010 (-26.00)   [dme-miR-1010:48-71]

--        ---u    a        auuua      a 
  guaagugg    guag ugaaacaa     ccaaca u
  ||||||||    |||| ||||||||     ||||||  
  CGUUUACC    UAUC ACUUUguu     gguugu u
GA        UUGC    C        ----a      u 

>dme-mir-1011 (-21.60)   [dme-miR-1011:32-54]

--      -u          g    ua 
  gugagu  uuugagccag aaua  g
  ||||||  |||||||||| ||||  u
  CGCUCG  AAACUUGGUU UUau  u
GA      CU          A    uc 

>dme-mir-1012 (-23.20)   [dme-miR-1012:37-59]

--     u    -              gcu 
  guggg agaa cuuugauuaauauu   u
  ||||| |||| ||||||||||||||    
  UACCC UUUU GAAACUGAUUauaa   g
GA     C    A              aaa 

>dme-mir-1013 (-18.70)   [dme-miR-1013:39-58]

--        c   c    -a      a  a 
  gugaguuu gua acuu  auuaau gg u
  |||||||| ||| ||||  |||||| || c
  cGCUCAAG CGU UGAA  UAauug cc g
ga        C   A    AA      -  g 

>dme-mir-1014 (-21.00)   [dme-miR-1014:48-68]

--   u         ag        cg   g   g 
  gua aauggaaau  auuuuaau  cag cgc u
  ||| |||||||||  ||||||||  ||| |||  
  CGU UUACUUUUA  UAAAAuua  guu gug c
GA   -         CU        -a   g   a 

>dme-mir-1015 (-20.60)   [dme-miR-1015:43-64]

-- ug  --u    c   aguuagcuuggcuga 
  g  ag   gaug ucc               g
  |  ||   |||| |||               u
  C  UC   CUAC AGG               g
GA GU  UCU    -   GUCCUgaauuuagga 

>dme-mir-1016 (-20.70)   [dme-miR-1016:38-58]

g       a      au    ---    ua 
 uaaguau gagagg  guga   uugg  a
 ||||||| ||||||  ||||   ||||   
 AUUCAUA CUCUCU  CACU   aacc  a
G       C      -C    Uga    uu 

>dme-mir-1017 (-24.30)   [dme-miR-1017:46-68]

gugaguuuaguggaguuuaaagcuuccc    -     aauuacgcGAAAGCUCUACCCAAACUCAUCCcccgaaaaugaucccuuucuccccuuu 
                            aucg ccagc                                                          u
                            |||| |||||                                                           
                            uggc ggucg                                                          c
------------------------gauu    a     guaacuucgucaauguuuaggugcuucugcgcguccuucacccuauguuuacacaacc 

>cel-mir-1018 (-23.80)   [cel-miR-1018:35-56]

--         -         c   aua 
  guaaguuca ugauuucuc cau   u
  ||||||||| ||||||||| |||   u
  CAUUCAGGU ACUAGAGAG gua   u
GA         U         A   cuu 

>cel-mir-1019 (-13.10)   [cel-miR-1019*:1-25] [cel-miR-1019:46-69]

---GU     U   UC     U  -       uaaa 
     GAGCA UGU  GAGUU CA UUUUuaa    a
     ||||| |||  ||||| || |||||||     
     UUCGU ACA  CUUAA GU aaaaauu    u
GACCU     U   -C     U  C       uauu 

>cel-mir-1020 (-19.01)   [cel-miR-1020:50-70]

-- u                 cuuagacaaaacaa 
  g aaguguuacagaauaau              c
  | |||||||||||||||||               
  C UUCACAGUGUCUUAUUA              u
GA U                 aaaaguaauuaaaa 

>mdv2-mir-M14 (-28.10)   [mdv2-miR-M14-5p:6-27] [mdv2-miR-M14-3p:42-62]

    g  U       U  AC        -     
cguu UG GGUACGG GC  CCUGAGAg auga 
|||| || ||||||| ||  |||||||| ||| u
gcaA GC CCGUGCC UG  GGACUcuu uauc 
    A  -       U  AA        a     

>mdv2-mir-M15 (-41.10)   [mdv2-miR-M15*:5-25] [mdv2-miR-M15:47-67]

u                    A      -aaa u 
 ugcGAUGGAAGGGAAAGGCA ACCgga    c u
 |||||||||||||||||||| ||||||    |  
 aCGCUACCUUCCCUUUUUGU Ugguuu    g a
g                    G      gccg a 

>mdv2-mir-M16 (-36.90)   [mdv2-miR-M16:8-30] [mdv2-miR-M16*:50-70]

      cAUC      G             --g    g 
gaaacg    CAGUCU UUUUGGCAUCUGA   uggc c
||||||    |||||| |||||||||||||   |||| g
cuuugU    GUCAGA GAGACCGUAGAcu   gccg u
      -AAA      -             guu    a 

>mdv2-mir-M17 (-37.80)   [mdv2-miR-M17*:7-28] [mdv2-miR-M17:41-62]

---------      A    U      GUCC       gug 
         ucgucc GUCC UCCCGG    CCUAGAg   u
         |||||| |||| ||||||    |||||||    
         agcgGG CAGG AGGGCC    GGAUcuu   c
agcgcgcgc      A    C      AACA       gca 

>mdv2-mir-M18 (-33.20)   [mdv2-miR-M18-5p:4-26] [mdv2-miR-M18-3p:47-67]

gua      -     AG  U           uguca 
   UGUUUU CUCUC  GC GGCAUUGcacg     u
   |||||| |||||  || |||||||||||      
   gcAGAA GAGAG  CG CCGUAACgugu     u
uaa      A     -G  U           ugccg 

>mdv2-mir-M19 (-31.60)   [mdv2-miR-M19-5p:8-27] [mdv2-miR-M19-3p:47-68]

    u cC       C  U U   C   a uau     
cgug c  CCCUCGG GG G GCA GGg g   cggg 
|||| |  ||||||| || | ||| ||| |   ||| c
gcaC G  GGGAGCC CC C CGU Cuc c   gccg 
    - AU       U  C C   A   - --u     

>mdv2-mir-M20 (-30.50)   [mdv2-miR-M20*:5-25] [mdv2-miR-M20:43-65]

  c      -A   UG    C      uu  a 
uc gUCCUU  GCG  GUGC UGAGAu  ua c
|| ||||||  |||  |||| ||||||  || a
aG CAGGAA  CGC  CAUG ACUcug  au c
  C      CG   GU    A      cu  g 

>mdv2-mir-M21 (-36.40)   [mdv2-miR-M21*:5-26] [mdv2-miR-M21:47-70]

    ---   -   U   -  G       GA    a   a 
cgcu   UCC UCC UCG CG GGUGCUU  gauc ccg a
||||   ||| ||| ||| || |||||||  |||| ||| u
gcgg   AGG AGG AGC GC CCACGAG  cuag ggc g
    uAG   C   U   C  A       --    -   a 

>mdv2-mir-M22 (-26.20)   [mdv2-miR-M22:9-31] [mdv2-miR-M22*:47-67]

cu    c    U   C   C      CU  U gua 
  gggc gUCU ACA GCA GUCACU  GG c   u
  |||| |||| ||| ||| ||||||  || |   c
  ccUG CGGA UGU CGU CGGUGA  cc g   g
--    U    -   U   U      -u  u aug 

>mdv2-mir-M23 (-34.00)   [mdv2-miR-M23:6-27] [mdv2-miR-M23*:42-63]

uucg         UG      U U   g guu 
    gAUGGUCCG  GUACGG G CCU u   g
    |||||||||  |||||| | ||| |    
    CUACCAGGC  CAUGCC C Gga a   u
-aaG         CA      U U   g gug 

>mdv2-mir-M24 (-29.40)   [mdv2-miR-M24*:5-27] [mdv2-miR-M24:42-63]

        U    U     GC     Gu   au 
ccauUUUU CCCU ACGGU  CUGAC  cgu  u
|||||||| |||| |||||  |||||  |||   
ggUAGAAA GGGA UGCCG  GAUUg  gca  u
        -    C     UA     --   au 

>mdv2-mir-M25 (-40.60)   [mdv2-miR-M25-5p:6-28] [mdv2-miR-M25-3p:44-65]

        -        CG     U  C   gg 
cguguCCU CCUUCGGA  AGUGC UG Cgg  a
|||||||| ||||||||  ||||| || |||  g
gcgCAGGA GGGGGCCU  UCACG ac gcc  u
        U        CA     U  u   aa 

>mdv2-mir-M26 (-33.80)   [mdv2-miR-M26:4-24] [mdv2-miR-M26*:40-61]

          -   U    G       ucg 
ccgUCCUUUG UGC GUGU UGAGAgg   u
|||||||||| ||| |||| |||||||   c
gGUAGGAAGC ACG CACG GCUcuuc   a
          C   C    G       ccu 

>mdv2-mir-M27 (-39.30)   [mdv2-miR-M27-5p:7-27] [mdv2-miR-M27-3p:46-68]

   c      - UC          G  - ug g  u 
ucc ucCUUC G  CGGUGUUCGA GC G  a ac u
||| |||||| |  |||||||||| || |  | ||  
agg AGGAGG C  GCCACGAGCU CG c  u ug u
   a      U GU          G  c gu a  u 

>mdv2-mir-M28 (-52.50)   [mdv2-miR-M28:7-28] [mdv2-miR-M28*:43-65]

u            GA              guug 
 cgcgaUUUUCUC  CGCCUACCCUCGGc    u
 ||||||||||||  ||||||||||||||    u
 gcgCUAAAGGAG  GCGGAUGGGAGCcg    c
g            AC              gcug 

>mdv2-mir-M29 (-33.00)   [mdv2-miR-M29-5p:4-25] [mdv2-miR-M29-3p:40-59]

ucu   U          U        gc u 
   UCU CACGUACCUC CUAUGGCu  a c
   ||| |||||||||| ||||||||  |  
   GGA GUGCAUGGAG GAUACcgg  u u
-au   U          U        ua u 

>mdv2-mir-M30 (-41.80)   [mdv2-miR-M30:3-24] [mdv2-miR-M30*:40-60]

--------caCAA          G   -      -u  c 
             CACUCCCUCG ACG CAGCAg  gu u
             |||||||||| ||| ||||||  ||  
             GUGAGGGAGC UGC GUCguc  cg g
gagcgcaccgCUC          G   A      uu  g 

>cel-mir-1021 (-28.69)   [cel-miR-1021:15-39]

        u           -GAUC       --------AUCC       u 
uacuguuu gaaacAAGUGA     AUGUGAA            UCGGagc c
|||||||| |||||||||||     |||||||            ||||||| g
augacaaa cuuuguuuauu     uauacuu            aguuucg g
        -           aaauu       auaaaccuuuua       a 

>cel-mir-1022 (-29.80)   [cel-miR-1022:15-37]

    caaaau    AA      UG  A    -GC      gaag 
gguc      cggc  GAUCAU  UU GGAC   CAUCuu    c
||||      ||||  ||||||  || ||||   ||||||    a
ucgg      gucg  cuagua  aa ccug   guagaa    a
    -aacuu    ac      gu  -    aua      auau 

>ppt-MIR160e (-56.00)   [ppt-miR160e:30-50]

--c  c    a  aau      -aacu  ca   C               C  c     a      g  aa 
   ug agaa uc   ggggga     gg  cUG CUGGCUCCCUGUAUG CA uugcg auuuug ca  a
   || |||| ||   ||||||     ||  ||| ||||||||||||||| || ||||| |||||| ||  c
   ac ucuu ag   ccuucu     cc  gac gacugagggacauac gu gaugc ugggac gu  u
agu  -    -  -gc      acguu  -a   a               c  c     a      g  gu 

>ppt-MIR160f (-68.70)   [ppt-miR160f:30-50]

-guuca   u   ac  ug  ga uu  a   C           U      c   c g      u   a 
      ugg uga  gg  gg  g  gg cUG CUGGCUCCCUG AUGCCA cug g ggcuug caa a
      ||| |||  ||  ||  |  || ||| ||||||||||| |||||| ||| | |||||| ||| u
      gcc acu  cc  uc  u  cc gac gaccgagggac uacggu gau c ucggac guu g
cccugg   u   --  gu  uc uu  a   a           c      c   a g      c   a 

>ppt-MIR160g (-52.10)   [ppt-miR160g:30-50]

cu    -     aa      --auau   ac   C               C  u   c a g    a   a 
  caug aaauc  ugggga      ugg  cUG CUGGCUCCUUGUAUG CA cug g a cuug caa a
  |||| |||||  ||||||      |||  ||| ||||||||||||||| || ||| | | |||| ||| c
  guac uuuag  acccuu      gcc  gac gacugagggacguac gu gau c u ggac guu u
-c    a     --      cugcau   -a   a               c  c   a a g    c   a 

>ppt-MIR160h (-53.70)   [ppt-miR160h:29-49]

uuaguuc  -     g     -auc  a  C  C          UA     a   a   g    uu  a 
       ag caugg gagau    gg uc GC UGGCUCCUUG  UGCCA cug gaa cuug  ga c
       || ||||| |||||    || || || ||||||||||  ||||| ||| ||| ||||  || a
       uc guacc uucug    cc gg cg acugagggac  acggu gau cuu ggac  uu u
--cacuu  a     g     guua  -  a  a          uc     c   a   a    cg  u 

>ppt-MIR160i (-59.80)   [ppt-miR160i:30-50]

cguua  a -  aa       -u   g  -u  -  C          U      c       gcaug  aaa   u 
     gc c gg  uauggga  acu ga  cC GC UGGCUCCCUG AUGCCA cugcgaa     cu   ggu u
     || | ||  |||||||  ||| ||  || || |||||||||| |||||| |||||||     ||   |||  
     cg g cc  augcccu  uga cu  gg cg acugagggac ugcggu gacguuu     gg   ccg u
----c  c a  -a       uc   a  cc  a  a          u      c       ----a  --a   u 

>ppt-MIR166c (-61.90)   [ppt-miR166c:77-97]

acu   ug aa -   gg    ua   u        cc      a        g  -   cc 
   ugg  c  c aug  acuu  ucg ggggaaug  gucugg ccggagcu ug ugu  a
   |||  |  | |||  ||||  ||| ||||||||  |||||| |||||||| || |||  c
   auc  g  g uac  ugag  agc CCCCUUAC  CGGACC GGCUucga ac acg  u
--u   gu ac a   uu    gg   u        UU      A        a  u   uc 

>ppt-MIR166d (-54.60)   [ppt-miR166d:82-102]

cauauua     -         g c uu         uga    a          uuagc     u 
       gucau augcggcuu u c  ggggaauga   uugg ccgaaguuuu     guugg u
       ||||| ||||||||| | |  |||||||||   |||| ||||||||||     ||||| u
       uagua uacguugaa a g  CCCCUUACU   GACC GGCUucgaaa     uaacc g
--uaacg     g         g u cu         UCG    A          ----u     c 

>ppt-MIR166e (-47.90)   [ppt-miR166e:96-116]

aa   g  u   ga  u     c  -     u a      cc  a   a       uau   - ---u     uu 
  ugu cu uug  gu gugaa cu ugcug g ggaaug  gc ugg ccgaagc   gug c    ccauc  a
  ||| || |||  || ||||| || ||||| | ||||||  || ||| |||||||   ||| |    |||||  a
  gca gg agu  ua uacuu ga gcgac C CCUUAC  CG ACC GGCUuug   cau g    ggugg  c
-g   -  u   gg  c     u  c     u C      UU  G   A       cau   a uuau     ug 

>ppt-MIR166f (-54.40)   [ppt-miR166f:74-94]

-a   -  ag  uacca   gu    u      a      cu  a        u    u  cu 
  uga cc  ca     gug  gcug gcuggg ggaaug  gc uggucuga gcuu ug  g
  ||| ||  ||     |||  |||| |||||| ||||||  || |||||||| |||| ||   
  acu gg  gu     uac  ugac cgacuC CCUUAC  CG ACCAGGCU cgaa ac  c
ga   u  ca  ---ua   uc    u      C      UU  G        c    c  ag 

>ppt-MIR166g (-54.20)   [ppt-miR166g:96-116]

gu   ga      u     a    c     c a      ccc     c      g a  uac   u -  ucu 
  gcg  gguguu aggug aacu ugcug g ggaaug   ccugg ccgaag c ug   uuc c cc   u
  |||  |||||| ||||| |||| ||||| | ||||||   ||||| |||||| | ||   ||| | ||   c
  ugc  uuauag uuuac uuga gcgac C CCUUAC   GGACC GGCUuc g ac   gag g gg   g
-c   ac      c     a    c     u C      UUC     A      - a  uac   u u  uaa 

>ppt-MIR166h (-45.50)   [ppt-miR166h:78-98]

aguuc    ag   ---   ag   u     u a       c ag   -  c       -        
     gaca  acu   aug  acu uguca g ggaauga g  ugg cc agauucg uuucugg 
     ||||  |||   |||  ||| ||||| | ||||||| |  ||| || ||||||| |||||| u
     cugu  ugg   uac  ugg acggu C CCUUACU C  ACC GG Uuuaagu aaagauc 
----a    ca   agg   cu   c     u C       U GG   A  C       u        

>ppt-MIR166i (-44.80)   [ppt-miR166i:74-94]

cuuggagauug    g     u u  u     u   c  a   ca      u   --   c 
           gaug gacuu g cg gggga uga gc ugg  cgaagc aac  auc u
           |||| ||||| | || ||||| ||| || |||  |||||| |||  |||  
           cuac uugaa c gu CCCCU ACU CG ACC  GCUucg uug  uag g
-ucgugaugua    g     u c  u     U   U  G   AG      -   ac   a 

>ppt-MIR166j (-50.70)   [ppt-miR166j:81-101]

gaagauguuauauaua  ug  a      u a       c  g   c   a   ca    uu  g 
                ug  ac uugccg g ggaauga gu ugg ccg agc  uauc  gg u
                ||  || |||||| | ||||||| || ||| ||| |||  ||||  ||  
                ac  ug gacggc c CCUUACU CG ACC GGC Ucg  guag  cc u
-gggaaagggugaaca  gu  a      u C       U  G   A   C   aa    uu  g 

>ppt-MIR166k (-49.40)   [ppt-miR166k:77-97]

gaaga  -   g  g   --        u a       c  a   c   a    a  -  uu  a 
     ug cug au ugc  cuuugccg g ggaauga gu ugg ccg agcu uc uc  gg u
     || ||| || |||  |||||||| | ||||||| || ||| ||| |||| || ||  ||  
     ac ggu ua acg  gaggcggc c CCUUACU CG ACC GGC Ucga ag ag  cc g
----c  a   g  a   uu        u C       U  G   A   C    -  u  uu  g 

>ppt-MIR166l (-52.00)   [ppt-miR166l:83-103]

aauuugugaa   -ga   a      u   u         c  g   c   u   c   ua   u  c 
          gcu   aug aacguu ucg ggggaauga gu ugg ccg agc aug  ucu gg a
          |||   ||| |||||| ||| ||||||||| || ||| ||| ||| |||  ||| ||  
          ugg   uac uugcaa ggc cCCCUUACU CG ACC GGC Ucg uau  aga cc u
--uguauuaa   uag   g      c   u         U  G   A   C   -   ua   -  g 

>ppt-MIR166m (-48.80)   [ppt-miR166m:80-100]

g  ga  acaga  u         c  c  u        ug  a   cu   u    --     g 
 cc  ga     ga uguguagcu ag ug aaggaaug  gc ugg  cga gcug  uuuga c
 ||  ||     || ||||||||| || || ||||||||  || |||  ||| ||||  ||||| a
 gg  cu     uu acacauuga uc ac UUCCUUAC  CG ACC  GCU cgac  gaacu u
a  ac  -acag  u         c  u  u        UA  G   AG   c    uu     g 

>ppt-MIR408b (-82.00)   [ppt-miR408b:94-114]

gugga    --a          - aagg -           c -u      a       ca       g c    a 
     agag   gagaguggug g    g agggaagccag g  gaggca ugcauga  acagcau c cagg g
     ||||   |||||||||| |    | ||||||||||| |  |||||| |||||||  ||||||| | ||||  
     ucuc   uucuuaccgc c    c ucccuUCGGUC C  CUCCGU ACGUacu  uguugug g gucc g
-----    gug          u gaua a           C UU      C       cc       g a    u 

>ppt-MIR477d (-57.80)   [ppt-miR477d:31-50]

guugauuucgauuaa    a     ug   C  U      A       C    ------  a   a     uc     uu 
               acag uugcu  uuc UC CCCUCA AGGCUUC Aaca      ac ggu cuugg  uuguu  c
               |||| |||||  ||| || |||||| ||||||| ||||      || ||| |||||  |||||   
               uguc gacga  aag ag gggggu uccgaag uugu      ug ccg gaauc  aacga  a
uacccuuggugggua    -     cg   c  u      c       a    agaccc  c   -     ga     cc 

>ppt-MIR477e (-52.50)   [ppt-miR477e:34-53]

gaugagaagauuccga      g   c  au         U          CAa  uc    gu 
                aaggcg uug uu  cuCUCUCCC CAAAGGCUUC   ca  aggu  a
                |||||| ||| ||  ||||||||| ||||||||||   ||  ||||   
                uuccgc aac aa  gggagaggg guuuccgaag   gu  uccg  g
-cuugccguuauuacg      a   a  gg         u          auc  --    aa 

>ppt-MIR477h (-50.90)   [ppt-miR477h:31-49]

ucagagggaguauacucagguguu   uuu      U A     U      u   ucagcauucuauuccacuucug 
                        ugu   UCUCCC C AAGGC UCCAac aca                      g
                        |||   |||||| | ||||| |||||| |||                       
                        aca   agaggg g uuccg agguug ugu                      c
-cguuguguaguuacuguccccau   ugu      u a     u      u   ugcguuuaagugacguagaauu 

>ppt-MIR529a (-71.70)   [ppt-miR529a:30-50]

cuccccuuuuc          cc      C            C       -ug   -uuuuc       a   au 
           uacauucaag  ggguuu GAAGAGAGAGAG ACAGCCC   gac      ucaugug ccg  u
           ||||||||||  |||||| |||||||||||| |||||||   |||      ||||||| |||  u
           guguagguuc  cccaga cuucucucucuc ugucggg   cug      gguacau ggc  u
-cgucaucuuu          au      u            u       cua   ucacgu       -   ga 

>ppt-MIR529b (-71.20)   [ppt-miR529b:30-50]

-uuca c  u  u   c  a  cc      C                     -  a -uu  a    -a      u 
     g cg ac aca cc ag  gggauu GAAGAGAGAGAGCACAGCCCg ua c   uc cuaa  gaccac u
     | || || ||| || ||  |||||| ||||||||||||||||||||| || |   || ||||  |||||| a
     c gc ug ugu gg uc  cccuga cuuuucucucucgugucgggc gu g   ag gguu  uuggug u
cacua c  -  -   a  c  au      c                     u  a uuu  a    ac      u 

>ppt-MIR529c (-65.70)   [ppt-miR529c:30-50]

-----uu    uuuacu       a cca     C                    --     cuu  g ug aa  a   u 
       cagc      acaucca g   ggauu GAAGAGAGAGAGCACAGCCC  cguua   uu c  a  ga uac u
       ||||      ||||||| |   ||||| ||||||||||||||||||||  |||||   || |  |  || ||| c
       gucg      uguaggu c   ccuga cuuuucucucucgugucggg  guagu   aa g  u  cu gug c
cguuacc    ------       c auc     c                    uu     -uu  g gu ac  a   u 

>ppt-MIR529d (-68.10)   [ppt-miR529d:37-57]

cuagcuucuccacaauuucucacccuc     ga c                      -a  u  aau 
                           guugg  u AGAAGAGAGAGAGCACAGCCCg  ug cc   g
                           |||||  | ||||||||||||||||||||||  || ||    
                           caacc  g ucuucucucucucgugucgggu  gc gg   u
-caugggaucuacgcacaucguggguu     uc u                      aa  u  acu 

>ppt-MIR529e (-73.00)   [ppt-miR529e:30-50]

uca     uu  --u      u c                             agag    cg 
   gcaau  ac   cacuca g ugggaucAGAAGAGAGAGAGUACAGCCCa    caac  c
   |||||  ||   |||||| | |||||||||||||||||||||||||||||    ||||   
   uguug  ug   gugagu c accuuggucuucucucucucgugucgggu    guug  u
---     gc  uac      c a                             -aag    au 

>ppt-MIR529f (-62.00)   [ppt-miR529f:30-50]

ugcacaauuuucu      u c      c                     aacgg     g 
             cacuca g ugggau AGAAGAGAGAGAGUACAGCCC     ccgau u
             |||||| | |||||| |||||||||||||||||||||     ||||| u
             gugggu c accuug ucuucucucucucgugucggg     gguug c
-ucuugccuuuac      c a      u                     --caa     a 

>ppt-MIR529g (-59.40)   [ppt-miR529g:30-50]

ucaccuuuuuc       a  cu   gu C            C       -cag   u      -cac   c  u 
           uacauuc ag  ggg  u GAAGAGAGAGAG ACAGUCC    acu uucacu    gac ac u
           ||||||| ||  |||  | |||||||||||| |||||||    ||| ||||||    ||| || u
           guguaag uc  ccc  a cuuuucucucuc ugucggg    uga aagugg    cug ug g
-cgcuaucuuu       c  au   ug c            a       cuga   c      uauu   -  a 

>ppt-MIR533c (-67.00)   [ppt-miR533c:125-145]

aguguuugaaag    uu  c  c  u         u      a     aagu u      -ga      --   --ga      - u 
            aggg  ag ga au gagagcugu cagacu ugaga    g guggaa   ggauuu  ggu    cuugaa c g
            ||||  || || || ||||||||| |||||| |||||    | ||||||   ||||||  |||    |||||| |  
            uccc  uc cu ug CUCUCGACA GUCUGA ACUCu    c caccuu   ccugaa  ccg    gaacuu g g
-ucuguauauga    cu  u  a  u         C      C     cguu u      gaa      au   aaag      c u 

>ppt-MIR533d (-71.00)   [ppt-miR533d:92-112]

cagcaucagcuc     c                  u      c    a  g      g  --a    u 
            agggg aguagcauggagagcugu cagacu ugag ga gggugu ga   aaca g
            ||||| |||||||||||||||||| |||||| |||| || |||||| ||   |||| u
            ucucc ucguuguguCUCUCGACA GUCUGA ACUC cu cucaca cu   uugu a
-acuucaguuaa     c                  C      C    g  g      g  aug    c 

>ppt-MIR533e (-72.80)   [ppt-miR533e:103-123]

---ga       ugcau  c    c  c    ga        gc              uggagcgaauuuagcuugugc 
     gugguug     ga gagg ag gaca  gagagcug  cagacugugaggga                     c
     |||||||     || |||| || ||||  ||||||||  ||||||||||||||                      
     caccggc     uu cucc uc cugu  CUCUCGGU  GUCUGACACUCccu                     u
gguug       ----u  u    u  u    gc        AC              cgacgugcucacucggugugu 

>ppt-MIR536d (-151.63)   [ppt-miR536d:396-417]

agggugcauuccaagugccg        aa  -                 cc  uu -  cugccgcuacuguuuuguuagucagguuugcagcgugucucgauauaguggugugcuuccguugcuauccuuucccuccagguaggaauucuguggcaaacuagugguugguucgcuuaucaaguugcaguccuucauaccuugauuuugaauuacugcagu 
                    ucccuugg  gc cgcaguuuggcacgaag  cu  c uc                                                                                                                                                                  c
                    ||||||||  || |||||||||||||||||  ||  | ||                                                                                                                                                                   
                    ggggaacC  CG GUGUCGAACCGUGCUUu  ga  g ag                                                                                                                                                                  a
-caccuaaacuucauuguuu        AA  U                 aa  uu u  aaaggcgauguucacccaccucacccaaguuguaguugggucuucaucuucgaucguuuugauacuccuuuuacguugcuguggagguaacgaagcugaaagacgucagucacgucagccauccuguguguuuuuuuuuuuuuugacggcuguucuucccac 

>ppt-MIR536e (-129.26)   [ppt-miR536e:439-460]

-------------------------------------------------------------------------------------------------uguguggauccuaagugucuccccuuggaagccgcaguuuggcaugaagcacuuauuccuuugcgcauccauuuugugacugcuuguauugagucgaauccaauuccuugccuucuacuucc   c  uc    ucac   ---u -        c    -----    -  u uu      c    u 
                                                                                                                                                                                                                           uuc aa  uaga    ucc    g guuuuuca auug     uuug gu g  gggggu auau g
                                                                                                                                                                                                                           ||| ||  ||||    |||    | |||||||| ||||     |||| || |  |||||| |||| u
                                                                                                                                                                                                                           aag uu  aucu    agg    c cagaaagu uaac     aagc cg u  uuucca uaug u
gaacCAACGUGUGUCGAACCGUGCUUugagacuauaggggaguuauuaaaaucccucuuuagcacguaccuguugacuucuaacugcucauaucacucuaauugucacgaucauacaagcaggggccaucacugacgucacugaaagacgucagugacuucauccgcgcguuuccuucuauggcuguucuggaguuugauaacccacaccgacgucuuu   c  ua    -caa   uugu g        u    uucua    a  c uu      -    u 

>ppt-MIR536f (-78.80)   [ppt-miR536f:127-146]

uucgacg  g    ---     u      -    ca  -                  ucucucugaacaucagauaucggucgguagaguug 
       uc uguu   aagug gauucc uuag  gc cauaguuugguaugaagc                                   a
       || ||||   ||||| |||||| ||||  || ||||||||||||||||||                                    
       ag acaa   uucac cuaagg aauc  CG GUGUCGAACCGUGCUUcg                                   g
----gaa  -    guc     u      g    uA  U                  cgagccuuuugucucgauuccaguacacuuguuug 

>ppt-MIR537c (-65.84)   [ppt-miR537c:122-142]

      c   a              g   u ac       a  -       ----aggua  a     a      c 
ucauau ugg cuguagaaacaccu aag g  ugaaguu gu ccgguuu         ug gaaug uuggag a
|||||| ||| |||||||||||||| ||| |  ||||||| || |||||||         || ||||| |||||| c
aguaua AUC GACAUCUUUGUGGA UUc c  acuucga cg ggccaaa         ac cuugu gaccuc c
      c   G              G   u ga       a  u       guaauguag  -     a      u 

>ppt-MIR537d (-64.40)   [ppt-miR537d:136-156]

uugaacaau       -u    ca   a              g   c       c  u   uu     aac     uuu    aaa      ga 
         gucauua  caua  uag cuguagaaacaccu aag uauugau uc acu  guugu   cgauc   augg   gugcac  a
         |||||||  ||||  ||| |||||||||||||| ||| ||||||| || |||  |||||   |||||   ||||   ||||||   
         uaguagu  guau  AUC GACAUCUUUGUGGA UUc augacua ag ugg  uagca   gcuag   uguc   uaugug  a
--auucuau       uc    uc   G              G   a       c  -   -u     --c     ---    --g      ua 

>ppt-MIR902c (-54.40)   [ppt-miR902c-5p:35-55] [ppt-miR902c-3p:85-104]

----  uau  gc    gcuc             -a  g            U    A     uga     au 
    uc   ug  guau    auuuccuccuucu  gc UAUGAUGCAGAU CUUC UCUgu   acuga  u
    ||   ||  ||||    |||||||||||||  || |||||||||||| |||| |||||   |||||  u
    ag   ac  uaua    uaaaggaggggga  UG AUACUACGUCUG GAAG Agacg   ugauu  u
ucuu  --u  ua    ----             ac  -            -    C     uag     cu 

>ppt-MIR902d (-57.30)   [ppt-miR902d-5p:30-50] [ppt-miR902d-3p:84-103]

aa  a   --uccc      gc  a  g               U        acuucacu  a  uu   c 
  gg ucc      auuugc  cc cu gguUAUGAUGCAGAU CUUCAUCU        gg gc  cca a
  || |||      ||||||  || || ||||||||||||||| ||||||||        || ||  |||  
  cc agg      uaaacg  gg ga cCGAUGCUACGUCUG GAAGUAga        cc cg  ggu a
--  -   ucuucu      aa  a  g               -        --------  a  -u   g 

>ppt-MIR902e (-54.30)   [ppt-miR902e-5p:34-54] [ppt-miR902e-3p:84-103]

gaca  gug  -----g  uc    c     g  a u             U    A    u       gau 
    gc   cc      uc  auuu cuucc cu g cUAUGAUGCAGAU CUUC UCUg uucgugu   g
    ||   ||      ||  |||| ||||| || | ||||||||||||| |||| |||| |||||||   c
    cg   gg      ag  uaaa gaagg ga c GAUACUACGUCUG GAAG Agac gagcacg   u
----  --a  acuuaa  ua    c     a  a U             -    C    u       ugu 

>ppt-MIR902f (-41.30)   [ppt-miR902f-5p:30-50] [ppt-miR902f-3p:78-97]

gagagaaugcucuu    cu     aa a            U    AUCUgcgggauauuc 
              uugc  ucgcu  g UAUGAUGCAGAU CUUC               u
              ||||  |||||  | |||||||||||| ||||               u
              aaug  ggcga  C AUACUACGUCUA GAAG               g
-ccaucguguuaca    ag     ac A            -    CAgacaauauggugc 

>ppt-MIR902g (-54.50)   [ppt-miR902g-5p:34-54] [ppt-miR902g-3p:92-111]

gguagca       ---uc      -    g  a u             U    A     uua      --u     
       gguuugu     auuuuc uucc cu g cUAUGAUGCAGAU CUUC UCUgu   gcugaa   cugc 
       |||||||     |||||| |||| || | ||||||||||||| |||| |||||   ||||||   ||| g
       uuagaua     uaaaag aagg ga c GAUACUACGUCUG GAAG Agaca   ugacuu   gacu 
-----ua       uuaca      u    a  a U             -    C     uug      ugu     

>ppt-MIR902h (-55.90)   [ppt-miR902h-5p:34-53] [ppt-miR902h-3p:78-98]

c    -acaac   caa       u g      a                  A   g      a 
 cugc      cca   aaucgug u aucuag UUAUGAUGUAGAUUCUUC Ucu gaauug a
 ||||      |||   ||||||| | |||||| |||||||||||||||||| ||| |||||| u
 gacg      ggu   uuagcau a uagguC AAUACUACAUCUGGGAAG aga uuuagc u
-    acaaua   -ug       u g      A                  A   a      u 

>ppt-MIR902i (-54.60)   [ppt-miR902i-5p:30-49] [ppt-miR902i-3p:74-94]

gacaaccugcag       u     ug a                      a   g  a 
            aguugug ugauc  g UUAUGAUGUAGAUUCUUCAUcu uga ug a
            ||||||| |||||  | |||||||||||||||||||||| ||| || g
            ucagcac auuag  C AAUGCUACGUCUAGGAGGUaga acu ac c
-gcaacaagcua       u     gu A                      a   a  u 

>ppt-MIR902j (-60.82)   [ppt-miR902j-5p:34-54] [ppt-miR902j-3p:123-143]

gc    uaaaguu   ca   ug   -c   c  A                 A     c ag u a   --        au     u u 
  gggu       gaa  ggu  ccu  ucu gu UAUGUUGCAGAUUCUUC UUugu u  c g uca  acuauagu  ugauu g c
  ||||       |||  |||  |||  ||| || ||||||||||||||||| ||||| |  | | |||  ||||||||  ||||| | u
  cuca       uuu  cua  gga  aga CA AUACAACGUCUAGGAAG aaacg a  g c agu  ugauauca  acuag c a
-a    -cauauu   ag   gu   ua   a  G                 A     u cu u -   ua        --     u g 

>ppt-MIR902k (-48.74)   [ppt-miR902k-5p:34-54] [ppt-miR902k-3p:92-112]

guugauuuu   -gc   -          -  auuc                 A     --   u    ugaaug 
         gcu   aua gauuaucuuu cu    UAUGUUGCAGAUUCUUC UUUgc  cgc cugc      a
         |||   ||| |||||||||| ||    ||||||||||||||||| |||||  ||| ||||       
         cgg   uau cuaauggaaa ga    AUAUAACGUCUAGGAAG Aaacg  gug ggcg      u
----auaac   uuu   g          a  ccAA                 C     aa   -    uuauac 

>ppt-MIR902l (-49.90)   [ppt-miR902l-5p:35-55] [ppt-miR902l-3p:84-104]

auuagcaacugcu   -          -c   c  c                 A  Ug aa    gau 
             gca cugguuaucu  ucu gu UAUGUUGCAGAUUCUUC UU  c  aacu   c
             ||| ||||||||||  ||| || ||||||||||||||||| ||  |  ||||   a
             ugu ggcuaauagg  aga CA AUACAACGUCUAGGAAG aa  g  uuga   u
---cgaguaguag   a          ca   a  U                 A  gu aa    aga 

>ppt-MIR1222b (-41.80)   [ppt-miR1222b:79-99]

gugcgucgaugcaac      aauc    uc         u         aa  u  u  - uu 
               ugcucu    auuu  guaccagug auuccuuca  cc cu cu c  g
               ||||||    ||||  ||||||||| |||||||||  || || || |   
               acgaga    uaaa  CAUGGUUAC UGAGGAAGU  gg gg ga g  a
-agauaaaaggaggu      guuc    cA         U         Cc  u  u  u uc 

>ppt-MIR1222c (-35.80)   [ppt-miR1222c:84-104]

cgagcgugaaaaaacu    aca  c    uc         cg     c  a    - ca   -  a 
                ugcu   au auuu  guaccagug  uuccu ca acca c  cgc uc c
                ||||   || ||||  |||||||||  ||||| || |||| |  ||| || g
                acga   ua uaaa  CAUGGUUAC  GAGGA GU uggu g  gcg ag u
-aagaggccaggaggu    gaa  c    cA         UU     A  C    u aa   u  u 

>ppt-MIR1222d (-55.50)   [ppt-miR1222d:81-101]

-   a  uuguu     u    c g            ug           cau  acaa      c 
 cug ug     auuau guua g gcauucgugugc  gugaacuccuu   gc    gugcgg u
 ||| ||     ||||| |||| | ||||||||||||  |||||||||||   ||    ||||||  
 ggc ac     uagua cggu c cguaaguAUAUG  CACUUGGGGAA   cg    cgcgcu c
g   -  uaguc     -    a a            GU           UUU  acca      u 

>ppt-MIR1222e (-59.70)   [ppt-miR1222e:79-99]

----a   gaau      g  ugugg         c      g              -  cga   u  g 
     guu    gugugc gu     ggauauuga gugcug ugagcuccuucaag cu   gug gc u
     |||    |||||| ||     ||||||||| |||||| |||||||||||||| ||   ||| || c
     cgg    cauacg ua     ccuguaacu CAUGGU ACUUGAGGAAGUUc gg   cac cg u
caggg   aacu      g  -----         A      G              c  ---   -  u 

>ppt-MIR1223b (-58.60)   [ppt-miR1223b:93-113]

uuauaacaacucucca        u u    c ag                   u ga  uaa   u  aa 
                aggcugga g ccag a  gguguguggcucuauaauc a  gc   agc ag  a
                |||||||| | |||| |  ||||||||||||||||||| |  ||   ||| ||  u
                ucugaccu c gguc U  CCACAUACUGAGAUGUUag u  cg   ucg uc  c
-uucgacacucguuug        u c    A CU                   c ag  uug   -  ac 

>ppt-MIR1223c (-53.90)   [ppt-miR1223c:93-113]

agguucacucuauuca  gu    uu     caa       c            caaa  uu     ag a 
                ag  ugga  gucag   aggugug gacucuauaauc    gc  guggg  g a
                ||  ||||  |||||   ||||||| ||||||||||||    ||  |||||  |  
                uc  accu  caguc   UCCACAU CUGAGAUGUUag    ug  cgcuc  c u
-uucgacacucguuuc  ug    uc     AUC       A            ccag  uc     ca u 

>ppt-MIR1223d (-52.50)   [ppt-miR1223d:85-104]

--  ggc  -    uacu     c    u gaa  ag          c        c aaac    ga u 
  gc   ga ugga    agacu gagg c   ca  ggugugugac cuacaauc g    gcga  c u
  ||   || ||||    ||||| |||| |   ||  |||||||||| |||||||| |    ||||  | a
  cg   cu gccu    ucugg cuuc g   gU  CCACAUACUG GAUGUUag c    cgcu  g a
au  aau  c    ----     c    c auc  CU          A        - -guc    uc u 

>ppt-MIR1223e (-57.10)   [ppt-miR1223e:80-100]

-ugacca   c     au         a  ag     u         u   -    aacc      
       uga aagca  ggagcuucg ca  ggugu ugacucuac acc cgug    ccauc 
       ||| |||||  ||||||||| ||  ||||| ||||||||| ||| ||||    |||| a
       auu uucgu  ccucggagc GU  CCACG ACUGAGAUG Ugg guau    gguag 
uuuccuc   u     --         c  CU     U         U   u    -aga      

>ppt-MIR1223f (-57.10)   [ppt-miR1223f:74-94]

c    -  a    gaa  -   u    cu      ag     u             -  gc ua 
 gcaa ug aaug   ca gca ggag  ucagca  ggugc ugacuuuauaacc cg  u  a
 |||| || ||||   || ||| ||||  ||||||  ||||| ||||||||||||| ||  |   
 uguu au uuac   gu cgu ccuc  ggucGU  CCACG ACUGAGAUGUUgg gc  a  a
-    c  a    -ag  u   -    uc      CU     U             u  ua uu 

>ppt-MIR1223g (-43.00)   [ppt-miR1223g:70-90]

   -    ugau   c  -    cu  a   u      u    c        -   cauu 
agu guau    cag gu ggag  uc gca gggugu ugac uuacaacu cgg    g
||| ||||    ||| || ||||  || ||| |||||| |||| |||||||| |||     
ucg caug    guc cg ccuc  ag cGU UCCACG ACUG GAUGUUgg gcu    a
   u    ---u   u  g    uc  c   C      U    A        u   aacu 

>ppt-MIR1223h (-62.90)   [ppt-miR1223h:82-102]

gagu   ug   -    -    u         a  ag     u    c    u   -   gaac  ac 
    gag  ggu cagc agca ggagguucg ca  ggugc uggc cuac acc cgu    cc  c
    |||  ||| |||| |||| ||||||||| ||  ||||| |||| |||| ||| |||    ||   
    cuu  ucg guug ucgu ccuccgagc GU  CCACG ACUG GAUG Ugg gca    gg  c
--uu   cu   u    c    -         c  CU     C    A    U   u   gaga  aa 

>ppt-MIR1223i (-73.30)   [ppt-miR1223i:78-98]

---caa  cu  uuc           u     ag     u         u   -     ac  au 
      gc  cg   agcagggugcu cagca  ggugc ugauucuac acc cgucg  cc  u
      ||  ||   ||||||||||| |||||  ||||| ||||||||| ||| |||||  ||   
      ug  gc   ucgucccacga guuGU  CCACG ACUGAGAUG Ugg gcagc  gg  a
uagaaa  ag  ---           -     CU     C         U   c     ga  ag 

>ppt-MIR1223j (-63.70)   [ppt-miR1223j:102-122]

cccuucaacaca          g    c ag               u   u   cugu  gauu  au      g 
            aggcugaagg ucag a  ggugugugacucuac auc gaa    gc    ug  ugccuc u
            |||||||||| |||| |  ||||||||||||||| ||| |||    ||    ||  |||||| a
            ucugacuucc gguc U  CCACGUACUGAGAUG Uag uuu    cg    ac  gcggag a
-cgucuuuuuaa          g    A CU               U   u   ----  aaau  au      u 

>ppt-MIR1023a (-74.60)   [ppt-miR1023a-5p:34-54] [ppt-miR1023a-3p:120-140]

--ggga  ga   ga c           u  ug cA           U      A   --   au  -ag            ug g u 
      gc  uug  c accuugcaguu ca  g  CACUCUCUCCA UUCUCU Ccg  uuc  gc   cgguugaucgau  g u g
      ||  |||  | ||||||||||| ||  |  ||||||||||| |||||| |||  |||  ||   ||||||||||||  | |  
      cg  agc  g uggggcguuaa gu  U  GUGAGAGAGGU AAGAGA ggu  agg  ug   gcuagcuaguua  u g c
gggagg  -g   -a u           -  gu AC           U      a   ug   ac  gua            gu g u 

>ppt-MIR1023b (-71.30)   [ppt-miR1023b-5p:34-54] [ppt-miR1023b-3p:122-142]

---    cgc  c   cc           u  ug cA        C  U      G    ucauga       ga     -  a      g 
   gaag   gg ggg  agcuugcaauu ca  a  CACUCUCU CA UUCUCU Ccug      cuugguu  ucgau gg gcggug u
   ||||   || |||  ||||||||||| ||  |  |||||||| || |||||| ||||      |||||||  ||||| || |||||| u
   uuuc   cc ucc  ucgaacguuaa gu  U  GUGAGAGA GU AAGAGA gggu      ggacuag  aguua cc cguuac u
gcu    uuu  -   --           -  gu AC        A  U      g    ---uga       -g     g  -      u 

>ppt-MIR1023c (-69.40)   [ppt-miR1023c-5p:30-51] [ppt-miR1023c-3p:122-142]

--gcg      cac        u    g   C      C    U      U  c ug u  cuagcc           c      uu 
     caguua   agcuugca uucg ugu CACUCU UCCG UUCCCU CC a  a gg      uugaguaagua auaugu  u
     ||||||   |||||||| |||| ||| |||||| |||| |||||| || |  | ||      ||||||||||| ||||||  g
     guuagu   ucgaacgu aagu aCA GUGAGA AGGC AAGGGA gg u  u cc      aauucguucgu uguaca  a
gcuua      ---        u    a   U      A    U      -  c gu u  ---uaa           a      ca 

>ppt-MIR1023d (-59.90)   [ppt-miR1023d-5p:30-51]

ug   aa   gc   u     a    c  C                      acagcuaucauccggacu 
  uag  gau  agc ugcag uuau au CACUCUCUCCGUUUCCCUUCCc                  a
  |||  |||  ||| ||||| |||| || ||||||||||||||||||||||                   
  guc  uua  ucg acguu agua ua gugagagagguaaagggaaggg                  g
ga   -g   gu   u     a    a  u                      aucauacauguccuuuac 

>ppt-MIR1024a (-63.60)   [ppt-miR1024a:112-132]

ggacgagauc    ------cc       -       c  c   c          g      c  -u     uguuu     -c     c 
          gcgg        gucauga guuuugu ga gcc ugcaauucaa cagacu ga  uacaa     gccgc  gacgu a
          ||||        ||||||| ||||||| || ||| |||||||||| |||||| ||  |||||     |||||  ||||| c
          cguc        caguacu cggaacg CU CGG AUGUUAGGUU GUCUga cu  auguu     uggug  cugua g
--------gu    aacucacu       u       c  C   -          G      -  uc     --uau     ca     c 

>ppt-MIR1024b (-43.60)   [ppt-miR1024b:74-94]

--------------------------- ua  c    u         g      cuauuau     -u      ga 
                           g  ga gccu gcaauucaa cagacu       gcggc  gccgcg  c
                           |  || |||| ||||||||| ||||||       |||||  ||||||  a
                           c  CU CGGA UGUUAGGUU GUCUga       uguug  uggugc  c
gucaucaacgcuaccaguacuucaaaa gc  C    -         G      --cuucg     uu      au 

>ppt-MIR1025 (-79.94)   [ppt-miR1025:160-180]

guu    u ca g  c     --  g      u   u               g u u     u  cu     a  aauuauuaucauucugcgggauguccucuaccc 
   ccgg g  a gu guguu  ga gagucg guu uuaguuuuguugugg c g aaggg gg  gcggg ga                                 a
   |||| |  | || |||||  || |||||| ||| ||||||||||||||| | | ||||| ||  ||||| ||                                  
   gguc c  u ca cacag  cu cucagc CAA AAUCGAAACAACACC G c uuccu cc  cgucc cu                                 c
-uc    u -- g  c     uc  a      u   U               - U -     u  -u     g  cugggggugagcuguugucugucccuuccgccu 

>ppt-MIR1026a (-63.23)   [ppt-miR1026a:30-50]

-    aaguucuug     c   cu         A   A           Ac    a   ua  c  -      ug auga     uu 
 auga         agaca ucu  aggucUGAG AAG CUUGAGAGGAC  uccu caa  gc uc gggaac  c    cguuu  c
 ||||         ||||| |||  ||||||||| ||| |||||||||||  |||| |||  || || ||||||  |    |||||   
 uacu         uuugu agg  uucaggcuc uuc gaacuuucuug  agga guu  cg ag cccuug  g    guaga  a
g    -auaccuug     u   -u         c   c           ac    c   ua  -  u      gu --ga     uu 

>ppt-MIR1026b (-54.70)   [ppt-miR1026b:30-50]

-------     acauaauu  ga  c  ug  c  UG         U        Acuc    aacaacuguggcaauucca 
       cagga        ga  cu uc  aa uc  AGAAAGACU GAGAGGAC    cugc                   u
       |||||        ||  || ||  || ||  ||||||||| ||||||||    ||||                   g
       gucuu        cu  gg ag  uu ag  ucuuucuga cucucuug    ggcg                   c
cuacaac     --------  uc  u  gu  c  gu         u        --gc    acgucuacgacgauauuga 

>ppt-MIR1027a (-59.06)   [ppt-miR1027a:34-54]

gugcaagagcagaua      uc  a      c    U    U                     cccuuc 
               cuuaag  ga gagcau UUUC AUCU CUCUUCCAAUCuauugaucug      c
               ||||||  || |||||| |||| |||| |||||||||||||||||||||      a
               gaauuc  cu cucgua aaag uaga gagaagguuagauaacuagac      a
cucagcgacagagag      ca  -      a    c    c                     uaucau 

>ppt-MIR1027b (-59.06)   [ppt-miR1027b:34-54]

gugcaagagcagaua      uc  a      c    U    U                     cccuuc 
               cuuaag  ga gagcau UUUC AUCU CUCUUCCAAUCuauugaucug      c
               ||||||  || |||||| |||| |||| |||||||||||||||||||||      a
               gaauuc  cu cucgua aaag uaga gagaagguuagauaacuagac      a
cucagcgacagagag      ca  -      a    c    c                     uaucau 

>ppt-MIR1028a (-70.90)   [ppt-miR1028a-5p:30-50] [ppt-miR1028a-3p:193-213]

acccgauuuacc     au   u   a  U U                 A    cacau     g aacgaaucuggcaguaagacuucauuuauauggguccauuccgcuccaagcuuuc 
            uucac  cug ucc gc C UAGAUCUACAAUGUCAC ugaa     acuug u                                                       a
            |||||  ||| ||| || | ||||||||||||||||| ||||     ||||| |                                                        
            aagug  gau agg CG G AUCUAGAUGUUACAGUg acuu     ugaac a                                                       c
-uugaacuccga     gu   u   c  U C                 c    ----u     g agucaacguagugguugccagucuaaaagugauauaacgauuuagacagugucua 

>ppt-MIR1028b (-70.20)   [ppt-miR1028b-5p:30-50] [ppt-miR1028b-3p:148-168]

caaaca   --aaa     u    ga u  u      A           A   acaacagcaauacuuaagguuaugagaagauaucuaucaugcucu 
      agc     uccau cuug  c ag UCUUAG UCUACAAUGCC CCu                                             c
      |||     ||||| ||||  | || |||||| ||||||||||| |||                                             u
      ucg     aggug gaac  g uC AGAAUC AGGUGUUACGG gga                                             g
---aaa   gaaua     u    ug u  C      C           C   aaguucuuuaaauuuuaaauucuaacauucuucuccuggugugag 

>ppt-MIR1028c (-71.80)   [ppt-miR1028c-5p:34-54] [ppt-miR1028c-3p:147-167]

--cgaa  -   g  agau          a cuu                    UCUugcgaaacugacagcggaauaccggacuuuuauuugaucaugau 
      ga cau ga    uucauccgcg c   gcUCUUAGAUCUACAAUGCC                                               g
      || ||| ||    |||||||||| |   ||||||||||||||||||||                                                
      cu gua uu    aggugggcgc g   CGAGAAUUUGGAUGUUACGG                                               g
ugucca  a   g  ----          c ugu                    Uguaccaccuggcguaccuaaggacuucauacuccguguacaccuaa 

>ppt-MIR1029 (-53.10)   [ppt-miR1029:106-125]

--     c   gug ac      caucac         uu      u      a     ----ga      ---gc      a 
  gcaca aau   c  acguua      uaucaguau  uugguu gagaga aggag      caggag     uacgag u
  ||||| |||   |  ||||||      |||||||||  |||||| |||||| |||||      ||||||     |||||| u
  cgugu uug   g  ugcagu      auaguCAUA  AACCAA CUCUCU Uccuc      guucuu     guguuu u
uu     -   -aa cu      -uaauc         CC      -      C     aagcgg      aguuu      g 

>ppt-MIR1030a (-88.90)   [ppt-miR1030a:33-53]

aagguacg     -----aa       c   c            CU    C       aa    gacuuu   g      -  g     ugca      -c     c  uu   a ag 
        caauu       agcugca cgu acauuUCUGCAU  GCAC UGCACCA  acgc      gag uuguga ug aauuc    gucaca  ccagc au  gca g  u
        |||||       ||||||| ||| ||||||||||||  |||| |||||||  ||||      ||| |||||| || |||||    ||||||  ||||| ||  ||| |   
        guuag       ucgaugu gcg uguaaagacgua  cgug acguggu  ugug      uuc gacacu ac uuagg    cggugu  gguug ug  cgu c  g
------ga     gucaaac       u   u            uu    -       ca    ------   g      u  g     -uaa      ua     -  gc   - uu 

>ppt-MIR1030b (-72.80)   [ppt-miR1030b:10-30]

u  c    a       CU    C       ---c       uc  g    -u  c     -      uuca   c   a   uuac     g 
 gu augc UCUGCAU  GCAC UGCACCA    aauguga  gc gcga  cu uguuc cggagg    gcc ggu guu    augcg c
 || |||| |||||||  |||| |||||||    |||||||  || ||||  || ||||| ||||||    ||| ||| |||    |||||  
 cg ugcg agacgua  cgug acguggu    uuacacu  cg ugcu  ga acagg gccuuc    cgg ucg cga    uacgu c
-  u    a       uu    -       agcc       --  a    uu  -     u      --ua   -   -   --cu     c 

>ppt-MIR1030c (-89.84)   [ppt-miR1030c:30-50]

-uacuccuu  ucu      uc       a       C       G     - g u    ua   acaa       u    -    uucccu    ac     ---    uuaccc 
         gc   gcugca  guaaugc UCUGCAU UGCACCU CACCA c u guga  gga    aacucug cuug cuga      gcac  augcc   uuug      a
         ||   ||||||  ||||||| ||||||| ||||||| ||||| | | ||||  |||    ||||||| |||| ||||      ||||  |||||   ||||       
         cg   cgacgu  cauugcg agacgua acgugga guggu g a cacu  ccu    uugagau gaau gacu      cgug  ugcgg   aagc      g
guuauaauu  --u      ua       g       u       -     u g u    --   ---g       -    a    -ccuau    gc     cau    ucuuac 

>ppt-MIR1030d (-90.50)   [ppt-miR1030d:30-50]

aguccuccgc  u c          ug g            C  G     cgg     ca   - c      --  u   u      aucag     c      ---------u   uu 
          uc g ugcaauguaa  u UCUGCAUCUGCA CU CACCA   uguaa  gug g gacgcu  uu ucu gcggau     gcacu augccg          ugc  c
          || | ||||||||||  | |||||||||||| || |||||   |||||  ||| | ||||||  || ||| ||||||     ||||| ||||||          |||   
          ag c acguuacauu  g agacguagacgu ga guggu   gcauu  cac c cuguga  aa aga cgccua     cgugg ugcggu          acg  c
-uuaacuccc  u a          gu g            a  -     --a     -a   u u      cu  c   -      ----a     u      guaaccuuuu   uc 

>ppt-MIR1030e (-87.00)   [ppt-miR1030e:30-50]

---gaaa    uuga              uuu       CU    C       ag         --cau          accaaauacacaguuguacugucaugccc 
       aucc    agcugcaacgcuac   UCUGCAU  GCAC UGCACCA  augcgauaa     guacagauga                             a
       ||||    ||||||||||||||   |||||||  |||| |||||||  |||||||||     ||||||||||                              
       uagg    ucgauguugugaug   agacgua  cgug acguggu  ugcgcuauu     cauguuuauu                             g
cuagacg    ----              uac       uc    -       ca         ucgcu          aacaaguuguuuaguucaggucaccgauu 

>ppt-MIR1030f (-82.00)   [ppt-miR1030f:30-50]

ccucuacauaac               ua       CU C          aaguuuuguaauucuacggcucgugguagucuguuguugugaaggug 
            uacuccaaugccacg  UCUGCAU  G ACCUGCACCA                                               g
            |||||||||||||||  |||||||  | ||||||||||                                               g
            augagguuacggugc  agacgua  c ugggcguggu                                               a
-uucaucuccua               cg       uu u          agcccauuauuacuaguuuacuuguggcucauuaugugagucgaugu 

>ppt-MIR1030g (-80.40)   [ppt-miR1030g:30-50]

ccccugcauuac               ua       CU C          aaguu    aaugcuaagcucuaaugugaaugaugacacuuuuuuuguacccaaag 
            ugcuucaaugccacg  UCUGCAU  G ACCUGCACCA     ucga                                               u
            |||||||||||||||  |||||||  | ||||||||||     ||||                                                
            acgagguuacggugc  agacgua  c ugggcguggu     agcu                                               g
-aauuuucccua               ca       uu u          -----    cagcauugacacuuugcuagugguucgucuugugugucgaaguacgg 

>ppt-MIR1030h (-70.90)   [ppt-miR1030h:14-34]

gcu       c         CU    C        gauu   a    aau   --ga     auacg     gca    uu      u 
   acguuac uaUCUGCAU  GCAC UGCACCGa    cga gagu   gaa    aucau     caguu   guca  uccagu c
   ||||||| |||||||||  |||| ||||||||    ||| ||||   |||    |||||     |||||   ||||  |||||| a
   ugcggug auagacgua  cgug acguggcu    gcu cuua   cuu    uagua     guuaa   cagu  agguca u
-gu       u         uu    -        auuc   -    -cu   aacg     acgaa     --a    cc      c 

>ppt-MIR1030i (-81.40)   [ppt-miR1030i:33-53]

--aauucuc    u  uc          c     C      CU      G      ---ac    ucac     u  g  c  au   ucagagcgguguugugcaaauccugcuuucag 
         cucu ca  gcuguaaugc auguu CUGCAU  GCACCU CACCGc     ugcc    gagaa gu ca ga  gga                                u
         |||| ||  |||||||||| ||||| ||||||  |||||| ||||||     ||||    ||||| || || ||  |||                                c
         gaga gu  cggcguuacg uauaa gacgua  cgugga guggug     acgg    uucuu ca gu cu  ccu                                a
guaaucacc    -  --          u     a      uu      g      auauu    --uc     u  a  -  --   uuauucuuaacgauuuugaguucgagucacua 

>ppt-MIR1030j (-86.00)   [ppt-miR1030j:32-52]

agccuccu  u   c       u  c     C      CU             -  --uu   c       u  g    agucagagcgguguugugcgaauccugcucucag 
        cu cag gcuguaa gc auguu CUGCAU  GCACCUGCACCAc ac    cua gagagaa gu caga                                  u
        || ||| ||||||| || ||||| ||||||  ||||||||||||| ||    ||| ||||||| || ||||                                   
        ga guu cgacguu cg uauaa gacgua  cguggauguggug ug    ggu cucuuuu cg gucu                                  c
ugaucauu  c   -       c  u     a      uu             g  uuac   -       -  g    cuuucuucuaaccucuuugcguuagggucguuaa 

>ppt-MIR1031a (-77.10)   [ppt-miR1031a:30-50]

a  gcgaa   ucu  a         ugc      C   C           u uua   cguug   a   u  ug  uu    ---uc     ---u      --u  g 
 cu     auu   gg ucauaaauu   UCAAUG UCU UGGAGCUUCUg g   cca     gag gag gu  au  ggac     ccuga    agggcu   ag c
 ||     |||   || |||||||||   |||||| ||| ||||||||||| |   |||     ||| ||| ||  ||  ||||     |||||    ||||||   ||  
 ga     uag   cc aguguuuag   aguuac aga acuucgaagac c   ggu     cuc cuc cg  ua  ccug     gggcu    ucccga   uc a
-  aggag   ugu  c         uuc      a   c           u -cg   ---ua   c   -  gu  uu    cuuuu     ucgu      cuu  u 

>ppt-MIR1031b (-72.00)   [ppt-miR1031b:30-50]

acggcggaaguucu  a         ugc      CU  C           ugccguugcuuuggggaguguggguuugucccccuggacaggucugc 
              gg ucacaaauu   UCAAUG  CU UGGAGCUUCUg                                               a
              || |||||||||   ||||||  || |||||||||||                                               g
              cc aguguuuag   aguuac  ga acuucgaagac                                               a
-aaagaaguagugu  c         uuc      ag  u           uccaaguuaauucucucccuacgucuagucccgguuccggcagucca 

>ppt-MIR1032 (-76.30)   [ppt-miR1032:30-50]

acua c     -c     cu             U AC                 aaaugcccaa    a 
    g aagag  caugc  cugcccaggcAGG G  UGCCUGGAAUUGGGcau          uugg c
    | |||||  |||||  ||||||||||||| |  |||||||||||||||||          ||||  
    c uucuu  guacg  gacgggucugucc c  acggaccuuaacccgug          aacc u
--ga c     ua     ag             c ga                 ----------    c 

>ppt-MIR1033a (-46.50)   [ppt-miR1033a:69-89]

ugaucagauacaaucc    -gu   a      a          a     c      ucc 
                ggcg   ggc uuggga uguccaucac accug caacau   a
                ||||   ||| |||||| |||||||||| ||||| ||||||    
                cugu   cug gacucU ACGGGUAGUG UGGGC GUugua   g
--cagacgcaaaaaca    acu   c      C          C     A      uug 

>ppt-MIR1033b (-49.60)   [ppt-miR1033b:69-89]

--  g  c     ggag    -ug          ca      a             c  ucu 
  gu ac aagau    auga   ggauguuggg  ugcuca cacgaucugucaa au   a
  || || |||||    ||||   ||||||||||  |||||| ||||||||||||| ||    
  ca ug uuuug    uacu   ccuguaacuc  ACGGGU GUGCUGGGCAGUu ua   g
ug  g  -     ---g    uca          UC      A             a  uga 

>ppt-MIR1033c (-48.42)   [ppt-miR1033c:69-89]

----------gag      auggaauugaug          ca      a             c  ucu 
             augaag            ggauguuggg  ugccca cacgaucugucaa au   a
             ||||||            ||||||||||  |||||| ||||||||||||| ||    
             uacuuc            ccuguaacuc  ACGGGU GUGCUGGGCAGUu ua   u
cucaauauaauag      -----------a          UC      A             a  uug 

>ppt-MIR1033d (-50.00)   [ppt-miR1033d:69-89]

aaguauuuacaaggcu    - uc   u     a       g               uuc 
                ggca g  gca uggga uguccau acgaucugucaacau   a
                |||| |  ||| ||||| ||||||| |||||||||||||||    
                ucgu c  ugu acucU ACGGGUA UGCUGGGCAGUugua   g
--gugcuuaguaguag    a uc   c     C       G               uug 

>ppt-MIR1033e (-57.50)   [ppt-miR1033e:69-89]

gacuaagauaacauuc    -   gu       a      g   a            ucc 
                ggca ggg  guuggga ugucca cac accugucaacau   a
                |||| |||  ||||||| |||||| ||| ||||||||||||    
                ccgu ccc  cgacucU ACGGGU GUG UGGGCAGUugua   g
--acuacacgucaaac    a   ug       C      A   C            uug 

>ppt-MIR1034 (-63.40)   [ppt-miR1034:95-115]

---   ---u     -    cauaaccuc    uu        ua            c    c    uu c      aa 
   gcg    uucaa ggcu         auuc  gcaagcac  cgcugccaaagu auga uguc  c uugcag  g
   |||    ||||| ||||         ||||  ||||||||  |||||||||||| |||| ||||  | ||||||   
   ugc    gaguu ccga         uaag  cguUCGUG  GCGACGGUUUCA Uacu auag  g aacguc  c
aga   uugu     u    -------au    -c        UC            U    u    cu u      ag 

>ppt-MIR1035 (-66.20)   [ppt-miR1035:30-50]

------g  ucu   a  gaagaag           G       C          Auu        u uuu      guguauucauauggca 
       gg   gaa gc       uuuuucaaacC UCUUAGC CACAAAACGA   guugugau g   gagauc                g
       ||   ||| ||       ||||||||||| ||||||| ||||||||||   |||||||| |   ||||||                 
       cc   cuu ug       aagaaguuugg agaaucg guguuuugcu   uagcacug c   cucuag                c
uguugua  --u   a  -----ag           a       a          ---        u --u      acacugucgaacguuc 

>ppt-MIR1036 (-83.30)   [ppt-miR1036-5p:30-50] [ppt-miR1036-3p:130-150]

       - ug cu          uauca           G                     ------   auuguggugguugcaagggcg 
acuguau g  g  ugaacgccaa     gUGUGGAGUCC UAAUUAGCUGcgaaauucaau      ggc                     a
||||||| |  |  ||||||||||     ||||||||||| |||||||||||||||||||||      |||                      
ugacaua u  u  guuugcgguu     CACAUCUUAGG AUUAAUCGAcgcuuuaaguug      ucg                     a
       u gu au          --cga           A                     uuuccu   acgcacgugugcaaccacauu 

>ppt-MIR1037 (-68.50)   [ppt-miR1037:78-98]

---  u    accuaa  cuu    a  c                            cu      c 
   gu acua      ug   gcaa ag ggcagccaucaaauccuaauaaggcuga  caacua a
   || ||||      ||   |||| || ||||||||||||||||||||||||||||  |||||| a
   cg ugau      ac   cguu uc ccgucGGUAGUUUAGGAUUAUUCCGAcu  guugau c
cgu  u    ---cca  -au    a  a                            uc      c 

>ppt-MIR1038 (-53.40)   [ppt-miR1038-5p:30-49] [ppt-miR1038-3p:74-94]

-a  gacaug  c        cga       A      U        AA   a    cau 
  gu      ga ucgugaca   gcauccU GGUGCG UUCCACCA  Gag gcac   c
  ||      || ||||||||   ||||||| |||||| ||||||||  ||| ||||   a
  ca      uu agcauugu   cguaGGA CUACGC AAGGUGGU  cuc ugug   u
cg  -agcga  -        uac       C      U        AC   a    uuu 

>ppt-MIR1039 (-63.60)   [ppt-miR1039-5p:30-50] [ppt-miR1039-3p:84-104]

--aggag   auu u u       a                 U             u      a  u 
       cuu   g g cagccac uuagggUCUUUGGGUCU UCUCUCCUGaaaa guuaag gc u
       |||   | | ||||||| ||||||||||||||||| ||||||||||||| |||||| ||  
       ggg   c c guuggug aguuCUAGGAACUCGGG AGAGGGGacuuuu uaauuc cg g
aauagua   -gu - -       a                 C             -      g  a 

>ppt-MIR1040 (-79.40)   [ppt-miR1040:92-112]

--aaga    auca  -       a    ag    -                                  acu 
      ggug    ua uccuuuc guau  agga cguguucauuuguguucacuacucgauguucaag   a
      ||||    || ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||   u
      ucac    au gggaaag caua  ucCU GUACAAGUAAACGCAAGUgaugagcuacaaguuc   g
guacag    ---g  c       a    cu    U                                  auc 

>ppt-MIR1041 (-49.70)   [ppt-miR1041:30-50]

-ugg   -   cau       uaag    c            GA     CC     a     gacc     ac 
    aca agu   uuaucuu    ugua uUUUUCGGGUGA  GUGGU  Ugaga ugauu    aggaa  a
    ||| |||   |||||||    |||| ||||||||||||  |||||  ||||| |||||    |||||  u
    ugu uca   aauagaa    acau aaaaaguccacu  cacca  acuuu acuaa    uccuu  a
auaa   c   ---       ucaa    c            ac     aa     -     -aac     ca 

>ppt-MIR1042 (-58.12)   [ppt-miR1042-5p:30-50] [ppt-miR1042-3p:87-108]

--   agauucuu    acu ug    ag        C  GA        G u   u     --    u 
  gug        caau   g  caga  ggGCUGUG AG  ACUAGAUA G cca ugcug  gaua g
  |||        ||||   |  ||||  |||||||| ||  |||||||| | ||| |||||  ||||  
  cac        guua   u  gucu  CCCGGCAC UC  UGAUCUGU c ggu acggc  cugu c
au   ---gcacc    guu gu    cG        C  UC        g u   u     ag    u 

>ppt-MIR1043 (-44.24)   [ppt-miR1043-5p:34-53] [ppt-miR1043-3p:79-99]

ugagaagagauuuaa    ga    gu   ag        C          C   c  ugaaug 
               cuag  aacg  ugg  gCCUUCAA UUCAUGCGUG Aaa cc      a
               ||||  ||||  |||  |||||||| |||||||||| ||| ||       
               gauc  uugc  acc  CGGAAGUU AAGUGCGCGU uuu gg      u
gagaauaagaaguac    -g    uu   cU        U          U   a  uagguu 

>ppt-MIR1044 (-57.04)   [ppt-miR1044-5p:30-50] [ppt-miR1044-3p:86-105]

ugc   aauuuuuu    ---    c   a   C                            -gu   u 
   uca        accu   gcug aag gaG ACAAAUAUGCACUACAAACucaaaugcu   cau c
   |||        ||||   |||| ||| ||| ||||||||||||||||||||||||||||   |||  
   agu        ugga   uggc uuc cUU UGUUUAUACGUGAUGUUugaguuuacga   gua a
uaa   --gcgcuu    auu    -   -   U                            guu   a 

>ppt-MIR1045 (-62.50)   [ppt-miR1045:30-50]

gaag     ---aug   gca    c  ca           CUU              a   aa    --     g 
    cgaua      ggu   cccu aa  cgAAGUGCUGG   UUUGACGUUuugcu cua  ugaa  uaacc u
    |||||      |||   |||| ||  |||||||||||   |||||||||||||| |||  ||||  ||||| g
    gcuau      uca   ggga uu  gcuucacgacc   aaacugcagaacga gau  acuu  auugg c
---g     guguga   -ac    c  cc           aac              c   -c    aa     a 

>ppt-MIR1046 (-63.10)   [ppt-miR1046-5p:30-49] [ppt-miR1046-3p:90-110]

ucuauaucuugau  --                    --             Gu           cag u  aa 
             gc  ucaaaauucagacgUGGAUU  UCAUAUUUUUCAC  caagaaucuca   g ac  u
             ||  ||||||||||||||||||||  |||||||||||||  |||||||||||   | ||   
             cg  aguuuuaagucugcacCUAA  AGUAUAAAAAGUG  guucuuagagu   c ug  u
---cucccguucg  aa                    AA             GU           --a -  aa 

>ppt-MIR1047 (-56.70)   [ppt-miR1047-5p:34-54] [ppt-miR1047-3p:95-115]

--     uuaugu u   -  a  a  uc   ga c       A   C         aa           u  ac 
  uugcg      g gac cu ug cc  uug  u ACUAGGU GUC UUGAUUACA  ggccuuaauuc uu  a
  |||||      | ||| || || ||  |||  | ||||||| ||| |||||||||  ||||||||||| ||   
  agcgc      c cug ga ac gg  aac  G UGAUCCA UAG GACUAGUgu  ccggaauugag aa  g
gg     ----uu u   u  c  g  uu   uc U       G   C         cc           c  ac 

>ppt-MIR1048 (-71.20)   [ppt-miR1048-5p:30-50] [ppt-miR1048-3p:99-119]

uuccauu  uga   --cuc                                u      cugcaacuggcaugc 
       ac   ugc     gucuacaagucUAGAACAUGAGUGUAGACGAC uaugug               u
       ||   |||     |||||||||||||||||||||||||||||||| ||||||                
       ug   acg     cagauguucAGAUCUUGUACUCACAUCUGUug auacac               g
---ucau  ucg   auaaa                                u      aaccuauuauugaag 

>ppt-MIR1049 (-48.11)   [ppt-miR1049:89-109]

---a c      acagaa    ga  uc     c    c    -   ga       u  ccucuau    -    au 
    g ugggug      uggu  cu  gcgau agac uguu ggc  aagagag cg       uugg acag  c
    | ||||||      ||||  ||  ||||| |||| |||| |||  ||||||| ||       |||| ||||  g
    c accuau      accg  ga  cgcug UCUG ACAA CCG  UUCUCUC gc       agcu uguc  c
ccug a      ---aag    -g  uu     c    -    A   -A       U  -------    a    cc 

>ppt-MIR1050 (-56.90)   [ppt-miR1050:30-50]

--    uu   ccu  ucuu        c               UC      aa     gcucaaucaucagcagcu 
  guag  ggu   uc    guugauuu ugUGACCACCUUGAU  CGGCCU  uuugc                  g
  ||||  |||   ||    |||||||| |||||||||||||||  ||||||  |||||                   
  cauu  cca   gg    uaacuaaa acacuggugggacua  gucgga  aaacg                  g
ga    -c   -uu  cacc        -               ua      ca     uaauuagcucaacuagga 

>ppt-MIR1051 (-82.90)   [ppt-miR1051-5p:34-53] [ppt-miR1051-3p:147-167]

uuggcgucucgucuugcgccgauaccuuaac      -      A               cg      u          gaauuaa     acaga  a   c 
                               guGGUU CAAGUG ACAGGAAGAgguuug  agaaug uguucugaaa       ccugg     gu gcg a
                               |||||| |||||| |||||||||||||||  |||||| ||||||||||       |||||     || ||| g
                               CACCGA GUUCAU UGUCCUUcucuaaac  ucuuac augaggcuuu       ggauc     ca cgu a
-gaauggaguaucguccgugguucggaauaa      A      C               aa      u          ------g     ----a  a   a 

>ppt-MIR1052 (-66.80)   [ppt-miR1052:123-143]

----aug   u      aauc  ug c      c                        cacgcuguguugugagcacugcagagccagca 
       gag guguug    cu  g cguauc augccgcaaucaguaaaagggagu                                u
       ||| ||||||    ||  | |||||| ||||||||||||||||||||||||                                 
       uuc cauagu    ga  u gcguag uAUGGUGUUAGUUAUUUUCCUUcg                                u
caaugug   -      ----  gu c      a                        uucguuagauauacauagugauagcugagugc 

>ppt-MIR1053 (-39.40)   [ppt-miR1053-5p:29-52] [ppt-miR1053-3p:73-94]

aacuuuuuaac      cca    g    A        C          CU   ucucu  c 
           uucgag   gccu ugaG UGGGUUAU UCAAAGUGGA  Uuc     gu u
           ||||||   |||| |||| |||||||| ||||||||||  |||     ||  
           aaguuc   ugga acuU ACCCGAUA AGUUUCAUCU  aag     cg u
aaaacucacau      -aa    a    C        C          -C   ---uu  g 

>ppt-MIR1054 (-98.20)   [ppt-miR1054:195-215]

gcgacauggauuccaauuuugga        g         a       c   acuc     cu  -aa  a     u   ugcu   u    ca  c   --  -    u           -  -  c 
                       ggcaaagg aggaguaga gggaggg uua    gacau  ga   gc uuggu gca    gug ucuu  ac uga  cg gugu cugcagcaaug ca ca c
                       |||||||| ||||||||| ||||||| |||    |||||  ||   || ||||| |||    ||| ||||  || |||  || |||| ||||||||||| || || u
                       ccguuucu UCCUUAUCU CUCUCCC AAU    cugug  cu   cg aacca ugu    cac agga  ug acu  gc caca ggcgucguugc gu gu u
-gcaggguccauguacaaacauu        G         -       A   gaca     -u  ggc  c     u   ----   u    --  a   ug  u    -           a  a  c 

>ppt-MIR1055 (-68.10)   [ppt-miR1055:103-124]

-uccucu   u  ccuu        cg    c  c         -              ---------      auac      
       cgg ug    agagcauc  cagc ag cacuggaaa caccccugaaucac         uauacc    uauua 
       ||| ||    ||||||||  |||| || ||||||||| ||||||||||||||         ||||||    |||| u
       guc ac    ucucguag  gucg UC GUGACCUUU GUGGGGAUUuagug         augugg    auagu 
aucuguu   u  --au        au    u  A         U              uuauaaaca      aacu      

>ppt-MIR1056 (-77.00)   [ppt-miR1056:95-115]

g   a        aac      c                u      a          u      aaaag  c 
 ucc ugguagga   cuaaaa aaagcccaggguuaug ugcaaa auccagguga guaagu     uc a
 ||| ||||||||   |||||| |||||||||||||||| |||||| |||||||||| ||||||     || a
 agg auuauucu   gguuuu uuucggguCCCAAUAC ACGUUU UAGGUccacu cauuca     ag g
-   c        aau      a                U      C          c      -aaga  u 

>ppt-MIR1057 (-55.20)   [ppt-miR1057:65-86]

cguugagucucacguuauguggag                       g       u u 
                        auuaucaacccccagcuagaaca aagaaua g a
                        ||||||||||||||||||||||| ||||||| |  
                        uaauaguUGGGGGUCGAUCUUGU UUCUUau c u
-augacuuuagaacagaucaaacg                       G       - a 

>ppt-MIR1058 (-85.80)   [ppt-miR1058:92-112]

--u    gc     -   auca  a              c                            aca    
   guga  agugu cuu    ug caguuugcagugcu ugugauggaaucucuagcggucuuguau   gcu 
   ||||  ||||| |||    || |||||||||||||| ||||||||||||||||||||||||||||   || c
   uacu  ucgca gaa    gc gucaaacguCACGA GCACUACCUUAGAGAucgccagaacaua   cgg 
aug    --     u   --gc  c              A                            cac    

>ppt-MIR1059 (-87.00)   [ppt-miR1059:30-50]

-u   ag  aaccu     c       a                       a   uuuaaaggaaucaccuagaagucauuguguaggagcuuggugggcgaucuaau 
  gcg  gc     ugauc cauuacg cgUGAAAGUCCUUCACAAACAAC gug                                                     u
  |||  ||     ||||| ||||||| ||||||||||||||||||||||| |||                                                     g
  ugu  ug     acuag guaaugc gcacuuucaggagguguuuguug cgc                                                     c
uu   cu  --auc     a       c                       -   ucaggguccagccuccuaccgcaauuuaccaucgcugacccgccaggaacuaa 

>ppt-MIR1060 (-52.60)   [ppt-miR1060:30-50]

-----a ga  auau   gua    uu          -   A     U           aauuuuuucuugauaagac 
      g  ag    ucu   ccau  ucgaaccUUU GUC UAGGA UACACACGcag                   c
      |  ||    |||   ||||  |||||||||| ||| ||||| |||||||||||                    
      c  uc    aga   ggua  aguuuggaaa cag auccu augugugcguc                   a
cuauca ac  --gu   --a    --          a   -     u           gcuaaagugcaauccacua 

>ppt-MIR1061 (-51.60)   [ppt-miR1061-5p:30-50] [ppt-miR1061-3p:86-106]

gugcuggg      a    ca    ---        ---     A           - c     a    agg 
        cacgca uaag  ugug   agcaUUAU   UUCAU GACUACUCAAA c ucuca aggu   g
        |||||| ||||  ||||   ||||||||   ||||| ||||||||||| | ||||| ||||    
        gugugu guuc  auac   ucguaGUA   AGGUA CUGAUGAGUuu g agagu ucca   a
-------g      a    aa    cug        AUA     A           c u     c    gau 

>ppt-MIR1062 (-82.00)   [ppt-miR1062:30-51]

cga   -c  uu   a       g          UC   U          -  uaggaugucgggaggggucgauguguuguggaauguuccg 
   guu  gc  ugc cgggguu uugucgUCCC  ACG GGUGUUUGCA GC                                        c
   |||  ||  ||| ||||||| ||||||||||  ||| |||||||||| ||                                        u
   caa  cg  gug gucucga agcagcaggg  ugc ccacaaacgu cg                                        c
cua   cu  uu   -       -          ua   -          u  ccggagugaccgucugccauucccagugaguuuaaaguuc 

>ppt-MIR1063a (-95.30)   [ppt-miR1063a:30-50]

-gaac a   cag       c      u   A          C       U     ----c      gcc        -cug   uggc    gu     --gc  -uu     gu 
     g cga   gguccgu gcucac uaC UCUUGGAGUA UGCAUCU cggau     uguugc   uuccgugc    cuc    aauc  cauga    cg   ggaau  g
     | |||   ||||||| |||||| ||| |||||||||| ||||||| |||||     ||||||   ||||||||    |||    ||||  |||||    ||   |||||  g
     c guu   ucgggca cgggug gug agaaccucau acguagg guuua     acaacg   aaggcgcg    gag    uugg  guacu    gc   ccuua  a
gucga -   -ca       a      c   a          u       u     aacuu      --a        ccaa   ---u    ug     aagu  uau     aa 

>ppt-MIR1063b (-107.90)   [ppt-miR1063b:30-50]

----a     acuugu   u   a      u   A     G   A             uc   --       c  -cgc      -   -    c      cuugacgaaugguuugaaacugaucacauccaacuugaacggauauccu 
     gaguu      gcu cgu guucac uaC UCUUG AGU CUGCAUCUUcaga  ugu  gagucuu gc    cuauug ccu ucgc accaug                                                 g
     |||||      ||| ||| |||||| ||| ||||| ||| |||||||||||||  |||  ||||||| ||    |||||| ||| |||| ||||||                                                  
     cuuag      cgg gca cgagug gug agaac uca gacguagaaguuu  aca  uucggaa cg    gaugac gga ggug ugguac                                                 c
uagaa     ----gu   -   a      u   a     a   c             -u   gu       u  ucau      a   u    -      caacagccuguugacuugacgaacuugccuuagugucgugauacuuccc 

>ppt-MIR1063c (-118.60)   [ppt-miR1063c:30-50]

-accaa  auuuu   g            u A        UAC         acaa    cgcuu       ucugaauuccagucacugaagcucgggcuagauuuaagggcucuggggacgcaggaaggugaguucagugguacaaauaaaagaauuagugauaauuuucuggagcuuag 
      ga     gcc uguugcccacuu C UCUUGGAG   UGCAUCUUc    ccgu     uuucaaa                                                                                                              u
      ||     ||| |||||||||||| | ||||||||   |||||||||    ||||     |||||||                                                                                                              a
      cu     cgg acaaugggugag g agaaccuc   acguagaag    ggca     aagguuu                                                                                                              g
ggcaaa  -acau   -            u a        cuu         caga    -uucu       ugcucgaaguuaagcucccuguuguccuggauaagaaaacuuuuagauaaaccuagaugugaauuuugcguucaguucauaugauuaaaacaaaagggagacgguaggcu 

>ppt-MIR1063d (-134.90)   [ppt-miR1063d:30-50]

acuacacuuauu    uu        c u A     G   A        U a      cu cu     -u    ----   -ua   ggu             a   uuga  caugu     uu       uaucagugaauuagugucgacaguuaggagugaaacuuuuuuuagcuguug 
            gccu  uugcccac c C UCUUG AGU CUGCAUCU c ugucgg  g  uuuca  gucu    ggc   cga   ugcucaugugauu ggu    uc     uaggc  uagguug                                                   a
            ||||  |||||||| | | ||||| ||| |||||||| | ||||||  |  |||||  ||||    |||   |||   ||||||||||||| |||    ||     |||||  |||||||                                                   u
            cgga  aaugggug g g agaac uca gacguaga g gcagcc  c  aaagu  cgga    ccg   gcu   acgaguacacuga uca    ag     guucg  auccgac                                                   a
agaacuuuuuau    -c        a c a     a   a        u a      au uu     uu    guuu   uaa   -ac             g   -uug  ---au     -u       cuaacuguguucuaauguaacacaacuuuacucuuaggguauugagggcgc 

>ppt-MIR1063e (-91.80)   [ppt-miR1063e:30-50]

---cacc     cuc    u    g    c u A     G   A        -  a    u    ---    uc    aagucucaggcagcacuagugcuguaguuucagccgaauucuugg 
       gcaug   gccu gcug ucac c C UCUUG AGU CUGCAUCU Uc cauc guag   cccu  aucu                                             u
       |||||   |||| |||| |||| | | ||||| ||| |||||||| || |||| ||||   ||||  ||||                                             a
       uguau   cgga cgac ggug g g agaac uca gacguaga gg guag cauc   gggg  uaga                                             u
gcuuacu     ---    -    g    a c a     g   a        c  -    u    uua    -u    gacuggagaaaaccacacgagucacggaguaaguauuuaagagcu 

>ppt-MIR1063f (-102.90)   [ppt-miR1063f:30-50]

ggagguuuuaa   u           u   A     G   A           ca    u    -     ---   u         uau  c  gaauuuugaaucagguacauaccuagcaucuucagauaagcacgu 
           agc cugucgcucac uaC UCUUG AGU CUGCAUCUUca  uucg caga uuuuu   cua cuguuguca   cc cg                                             g
           ||| ||||||||||| ||| ||||| ||| |||||||||||  |||| |||| |||||   ||| |||||||||   || ||                                             a
           ucg ggcagcgagug gug agaac uca gacguagaagu  aagc gucu gaaga   ggu gacaauagu   gg gu                                             u
cagaaaguaua   -           c   a     a   c           ug    -    c     cgu   -         -uu  u  gauacgagaggcauucucucaaucgcugacuaggcauacuugcac 

>ppt-MIR1063g (-116.30)   [ppt-miR1063g:30-50]

ga  g    -uuc    u         c u A     G   A        -  a    u -u        c     ----g  -uca   -    a       -g    aaaauuguguuauuggauauucaguaaagaugggugcgaaaauggagucaau 
  cu cgag    gcuu guugcucac c C UCUUG AGU CUGCAUCU Uc cauc c  ggguuuca aaucu     cc    ggu uguu aagugcc  gagu                                                    c
  || ||||    |||| ||||||||| | | ||||| ||| |||||||| || |||| |  |||||||| |||||     ||    ||| |||| |||||||  ||||                                                    c
  ga gcuu    cgga caacgggug g g agaac uca gacguaga gg guag g  cuuaaagu uugga     gg    cca acga uucacgg  cuca                                                    a
-a  a    uuau    -         a u a     g   a        c  -    u uu        -     agaaa  uaua   c    g       gg    aaacaugauacuauucacacauuugugaaauagagaucaugauacguuuacu 

>ppt-MIR1063h (-91.20)   [ppt-miR1063h:30-50]

aagaacggcaaa  u          cu   A        UACU         ga c   -    c   cacu  -     ---uu      ---  c     accauuugaauuuggg 
            gg ccgucgucca  uaC UCUUGGAG    GCAUCUUca  u ugu ugca guu    gc cuguu     accagc   cu cauga                c
            || ||||||||||  ||| ||||||||    |||||||||  | ||| |||| |||    || |||||     ||||||   || |||||                 
            cc ggcagcgggu  gug agagccuc    cguagaagu  a aca gcgu caa    cg gacaa     uggucg   ga guacu                u
-cgcgaucuaca  u          ac   a        uuuu         ag a   u    c   --au  c     uaguu      uaa  a     aagggaggcaaucucu 

>ppt-MIR1064 (-53.50)   [ppt-miR1064-5p:30-50] [ppt-miR1064-3p:68-88]

-    aca  g a   a   a uu ga   C                    --aau  a 
 acgu   gg c auc acg u  c  ggg AUUCUGAGAAUAAUCAUCCG     gc g
 ||||   || | ||| ||| |  |  ||| ||||||||||||||||||||     ||  
 ugcg   cc g uag ugc a  g  ccC UGAGACUCUUAUUAGUGGGc     cg c
a    --g  a c   g   g gg aa   U                    gggcc  a 

>ppt-MIR1065 (-92.70)   [ppt-miR1065:30-50]

gauccauuguacu  uu         aa   A        C        Gag     cugu         a   ga      ggu g      cu  -      --    a 
             ga  ccgaaggag  gAC GUCUCUGA UUCUCGCA   ugagc    uucugcagu cug  acgauu   u agacca  gg cacuag  gcaa a
             ||  |||||||||  ||| |||||||| ||||||||   |||||    ||||||||| |||  ||||||   | ||||||  || ||||||  |||| a
             cu  gguuuccuu  cug cagagacu aagggcgu   guucg    aagacgucg gac  ugcuag   g ucuggu  uc gugguc  uguu c
-accacuguuaau  uu         cg   a        a        aca     ---c         a   -a      --- g      --  a      uu    c 

>ppt-MIR1066 (-79.80)   [ppt-miR1066:69-89]

--    a    ucc   c              c           a             acu 
  guug agcg   gag augcgguuaccacu guaccccgcuc guaacaugugcga   u
  |||| ||||   ||| |||||||||||||| ||||||||||| |||||||||||||    
  uagc ucgu   cuc ugcgccggugguga CAUGGGGCGAG CGUUGUACAcgcu   a
gu    a    ---   a              a           A             auu 

>ppt-MIR1067 (-66.10)   [ppt-miR1067:30-50]

agac   u    -            a        A    A              ucu    aauc    cuugauuccugaagga 
    uug uguu ugcgguuaauua uugcACAU CUGA GUUUGAUGCCAugu   gaug    cggu                a
    ||| |||| |||||||||||| |||||||| |||| ||||||||||||||   ||||    ||||                 
    gac acag acguuaauugau aaugugua gacu caaacuacgguaca   cuac    gucg                a
--aa   c    c            a        c    g              ucu    -ggu    ccguuaaaguacaaag 

>ppt-MIR1068 (-88.73)   [ppt-miR1068:29-49]

cuuuucaacacc      c   c          AU        A GU       g    gu    g     au       c     ccuccauuuu  gacca 
            uuggcg ugg cuucgUAGCC  UUGCUUGA G  CAacuca acgg  ggaa aggca  guauuga gucuu          cc     u
            |||||| ||| ||||||||||  |||||||| |  ||||||| ||||  |||| |||||  ||||||| |||||          ||      
            aacugu acc ggagcaucgg  aacgaacu c  guugggu ugcc  cuuu uccgu  cguaacu cggag          gg     u
-caacuacgaau      a   a          gc        c ug       g    gu    g     cu       a     ---acaccac  aucuc 

>ppt-MIR1069 (-79.20)   [ppt-miR1069-5p:30-50] [ppt-miR1069-3p:177-197]

uguucuucaagca  u  cc                UC         G U       c     cuu    a   u    u         --u     auaauuggucuuucaaguauuuucu 
             ca gu  acuucauguUCUCAAG  UUAUCAUUG A ugagcac uuggu   ucaa uau cuau augauaugu   gauau                         c
             || ||  ||||||||||||||||  ||||||||| | ||||||| |||||   |||| ||| |||| |||||||||   |||||                         a
             gu ca  ugaaguacaagaguuc  aauaguaau U ACUCGUG AACUA   AGUu aua gaug uauuauacg   uuaua                         u
-guuucaucuuca  u  uc                ga         g C       A     AAU    c   u    u         uuu     aaacauuauuauacaaaaguauaau 

>ppt-MIR1070 (-46.30)   [ppt-miR1070:30-50]

uuggaccauuuuc  -ug                  U  A          C   aa 
             uc   ugcuucguuguaUCGGUU CU GUAAAACUUG uga  a
             ||   |||||||||||||||||| || |||||||||| |||  a
             ag   acgaagcaacauagccaa ga cauuuugaac acu  u
--gauguuauguc  cca                  c  g          a   cu 

>ppt-MIR1071 (-75.90)   [ppt-miR1071-5p:30-50] [ppt-miR1071-3p:89-109]

gugaacua   c  --gac a       -             C        A        g     aaaa 
        ugu gc     g gauagga cccGCGCAAUUCC GAACGGGU Gaagaacc gaucu    a
        ||| ||     | ||||||| ||||||||||||| |||||||| |||||||| |||||     
        gca cg     c cuguccu gGGCGCGUUAAGG CUUGCCCA cuucuugg cuggg    u
----aaaa   a  aacac c       u             U        c        g     cgcg 

>ppt-MIR1072 (-78.99)   [ppt-miR1072:256-279]

aauuu        c   u       -a   g          u   uu       ug   auuuu          uu    aaucaaag   -gaau    u       uauuucauucuaauuucuuaaaaauaauguugguuguuuuuguagaauu 
     guucuaau uua gagaugg  uau uucaagcuuc agu  cacaaug  aua     aaauaauugu  uugu        uau     uuua gauuuua                                                 a
     |||||||| ||| |||||||  ||| |||||||||| |||  |||||||  |||     ||||||||||  ||||        |||     |||| |||||||                                                 u
     caagauua aau uucuacc  aua aAGUUCGAAG UUA  GUGUUAC  uau     uuuauuaaca  aaca        aua     aaau uuaaaau                                                 u
-uaau        a   -       gg   a          U   UU       GU   --agu          -u    guauaaaa   acccu    -       uuucuauaaaaaaguauauuguaucucuaaaauguuauacauaaauauu 

>ppt-MIR1073 (-71.30)   [ppt-miR1073-5p:34-54] [ppt-miR1073-3p:151-171]

---g     u    uuaac    a   a      c     -  A               u   aaucuaau   g auu  -u      a  aa uu     uca   a 
    cagac gauu     gugg aga ugaaca aUGAA UG UAUUAACGUCCACGa gua        gca a   gu  gcuggg uu  c  caguu   gac c
    ||||| ||||     |||| ||| |||||| ||||| || ||||||||||||||| |||        ||| |   ||  |||||| ||  |  |||||   ||| a
    gucug cuaa     uacc ucu acuugu UACUU AC AUAAUUGCGGGUgcu cau        cgu u   ca  ugaccc aa  g  gucag   uug a
ucag     -    ---cu    a   c      A     U  -               u   --------   g cau  cu      -  ag -u     uaa   a 

>ppt-MIR1074 (-68.80)   [ppt-miR1074:30-50]

gag   c   -uu   c                      A                aauuucaua 
   uug agg   uug uggauuuguggucAGGGUUGUU GUUGUGUUGAUggguu         a
   ||| |||   ||| |||||||||||||||||||||| ||||||||||||||||         c
   gac uuu   aac accuaaacaccagucccaacaa caacacaacuacccaa         u
--a   u   uuu   a                      g                cuacaacaa 

>ppt-MIR1075 (-64.50)   [ppt-miR1075:92-112]

gguugguug     a -u     ucua   ug            c               acaac     a 
         aguga c  ugaca    uau  guaggaaccaug cuggaacaaggcaaa     uaccc a
         ||||| |  |||||    |||  |||||||||||| |||||||||||||||     ||||| a
         ucacu g  gcugu    gug  CAUCUUUGGUAC GACUUUGUuccguuu     auggg g
cuauuucug     a uu     --uc   gu            U               cucuu     u 

>ppt-MIR1076 (-78.70)   [ppt-miR1076-5p:27-47] [ppt-miR1076-3p:177-197]

gcgaaagcuauu   ac   -          A  A          U    c a   ca    caguuaagauauuuuagccccaugaaaauguggguuagauguaagaguagaa 
            caa  gug guguugUAUC CA GGUGCGAUAA UGcu g aga  uugg                                                    g
            |||  ||| |||||||||| || |||||||||| |||| | |||  ||||                                                     
            guu  cac uacaacauag GU CCACGCUAUU ACGA C ucu  aacc                                                    u
--aagguagaac   ga   a          c  C          C    A C   aa    uugagucuuaacuguuacgugucgauguaauugugaugcauguuuagggaug 

>ppt-MIR1077 (-54.90)   [ppt-miR1077-5p:26-46] [ppt-miR1077-3p:102-122]

aaaauuac     aac   a         AAU     G      G  g   -  c  uggac     c c       u 
        cgaga   uug cuccuUUCA   GUUCG AUGCGU Cg ccc cg gu     uugag g gaagcua a
        |||||   ||| |||||||||   ||||| |||||| || ||| || ||     ||||| | ||||||| u
        guuuu   aac gaggaaagu   CGAGC UAUGCA GU GGG gc ca     aacuc c cuuugau g
-uuaacau     aaa   a         guC     A      G  A   A  u  ----u     a -       u 

>ppt-MIR1078 (-37.00)   [ppt-miR1078:30-50]

caacaacaaaac       c    ugcuu                        aa 
            aaaauac uuga     UUUGGAUGAUUCAAUUGUGAUaaa  c
            ||||||| ||||     ||||||||||||||||||||||||   
            uuuugug aacu     aaaucuauuaaguuaacacuauuu  u
-aucaacauuau       u    ucuau                        ga 

>ppt-MIR1079 (-50.50)   [ppt-miR1079-5p:34-56] [ppt-miR1079-3p:100-121]

g       a   u     c     uu     cu   CG    C       U  A   g gc c    aug    a 
 gcuuguu aag uuaga ugaug  aguga  CAC  AGCU UUCUUUU GG GGu g  a ugug   uacg g
 ||||||| ||| ||||| |||||  |||||  |||  |||| ||||||| || ||| |  | ||||   |||| a
 cgaacga uuu aaucu acuau  uuacu  GUG  UCGA AAGAAAA CC cca c  u acgu   gugu a
-       a   u     u     uc     UG   UA    U       -  A   g ua a    cca    g 

>smo-MIR156a (-59.80)   [smo-miR156a:11-30]

--uu u   u   -      -             a      c c       g 
    g cac ggC GACAGA AGAGAGUGAGCAC cggggc c guccaug a
    | ||| ||| |||||| ||||||||||||| |||||| | ||||||| u
    c gug ucg cugucu ucucucacucgug gcuucg g uagguac c
uugu c   -   a      g             c      a u       g 

>smo-MIR156b (-53.80)   [smo-miR156b:11-31]

-u   cugc  C          -          ag    uu      aa  -gc    
  gga    ug UGACAGAAGA UAGAGAGCAC  acgu  ggcugc  ga   gga 
  |||    || |||||||||| ||||||||||  ||||  ||||||  ||   || a
  cuu    ac acugucuucu aucucucgug  ugcg  ucgacg  cu   ccu 
ag   ucua  u          u          cu    uc      ac  aua    

>smo-MIR156c (-44.40)   [smo-miR156c:11-31]

ggagacu   U           AG       auu  gc  -      cuu 
       gau UGACAGAAGAA  AGAGCAC   ug  ug cacgcu   g
       ||| |||||||||||  |||||||   ||  || ||||||   g
       cua acugucuucuu  ucucgug   ac  ac guguga   u
--caacg   u           cu       cgu  uc  u      ucu 

>smo-MIR156d (-45.70)   [smo-miR156d:11-31]

-- ga  -u    U  A       -C         c    g   cc   -  u 
  g  uc  auug UG CAGAAGA  AGGGAGCAC agca cca  agc uc a
  |  ||  |||| || |||||||  ||||||||| |||| |||  ||| ||  
  c  ag  uaac ac gucuucu  ucucucgug ucgu ggu  ucg ag g
gg uc  cc    u  c       ua         u    g   uu   g  a 

>smo-MIR159 (-123.64)   [smo-miR159:249-269]

----   ca                      cu     -   u  - uc     u  uc   g   ac        u  c   a      cg   cca  auca   - -        ga a      aaacaugcccgu     ccuccg 
    uug  gggggagcucccuucaauucaa  gaggu cgg gc g  gcugu ac  gcu cug  ucaugcau cg cug caugcc  caa   uc    gau c gugaucag  c cgccga            gauca      c
    |||  ||||||||||||||||||||||  ||||| ||| || |  ||||| ||  ||| |||  |||||||| || ||| ||||||  |||   ||    ||| | ||||||||  | ||||||            |||||       
    gac  uuCCCUCGAGGGAAGUUAGGUU  cuuca guc cg c  cggcg ug  cga gac  aguacgug gc gac guacgg  guu   ag    cua g cacuaguu  g gcggcu            cuagu      a
cuua   -c                      Cc     a   u  g uu     -  ga   g   gu        u  c   g      -a   -ug  cccc   a a        -g a      ------------     cucuca 

>smo-MIR160a (-58.00)   [smo-miR160a:11-31]

--aaaauc       C            U    u   gg    a       gcu 
        acucUGC UGGCUCCCUGUA GCCA cug  gggg uuuauca   g
        ||||||| |||||||||||| |||| |||  |||| |||||||    
        ugagacg accgaggggcau cggu gau  ccuc gaauagu   a
ucgcucuu       c            u    c   -a    -       agc 

>smo-MIR160b (-55.00)   [smo-miR160b:13-33]

--acaaacaaucc    C                 c   a   g  ca     g 
             cUGC UGGCUCCCUGUAUGCCA cug gaa cc  ccgaa u
             |||| ||||||||||||||||| ||| ||| ||  |||||  
             gacg accgaggggcgugcggu gau cuu gg  ggcuu g
uuucucucuucga    u                 c   c   a  ac     u 

>smo-MIR166a (-66.60)   [smo-miR166a:108-128]

--a    g  cu     u     u  uu      cu    ggaggcauuccuuugaucuuuucucuccuggga 
   gcaa uc  ggaug gggga ug  gccugg  cgag                                 a
   |||| ||  ||||| ||||| ||  ||||||  ||||                                  
   cguu ag  ucuac CCCCU AC  CGGACC  GCUc                                 g
cca    -  ag     u     U  UU      AG    ucgcguguaaagaccgugucaagaagaccucau 

>smo-MIR166b (-58.50)   [smo-miR166b:99-119]

uuccuc      a    g a  u        u     a cu     gauugauuugauacuaaggcuacg 
      agugag acca g ug ggggagug agccu g  cgaga                        c
      |||||| |||| | || |||||||| ||||| |  |||||                         
      ucacuc uggu u ac CCCCUUAC UCGGA C  GCUcu                        a
------      g    g g  u        U     C AG     guuucgacacuaguguuggaacac 

>smo-MIR166c (-62.10)   [smo-miR166c:107-127]

---uau    c        cu      cu   g      ucgc   ga   -        c caaa   gag 
      guug ggggagug  gccugg  cga acagca    cga  ucu gaucaaau g    guu   a
      |||| ||||||||  ||||||  ||| ||||||    |||  ||| |||||||| |    |||    
      cgac CCCCUUAC  CGGACC  GCU uguugu    gcu  agg cuaguuug c    cga   a
aaacau    u        UU      AG   g      ----   ag   u        a acua   aca 

>smo-MIR171a (-59.20)   [smo-miR171a:105-125]

--c     ag  c         u u        g    acg       --a  g  -   aaa    g   
   gagcg  ag gauauuggc c gcucaauc caug   cugcugc   uc ca cga   auuu cg 
   |||||  || ||||||||| | |||||||| ||||   |||||||   || || |||   |||| | a
   uuugu  UC CUAUAACCG G CGAGUUag guac   gacgacg   ag gu gcu   uaag gu 
cuu     gg  A         U C        a    gga       cug  -  a   agg    g   

>smo-MIR171b (-39.20)   [smo-miR171b:72-92]

----ug     --         a  a       u a   u   a     cucg 
      ugucu  gugauauug ca ggcucaa c ggc gca ugcua    a
      |||||  ||||||||| || ||||||| | ||| ||| |||||    g
      auaga  CACUAUAAC GU CCGAGUu g ccg cgu gugau    c
cgaucg     UA         C  G       c a   u   a     uaau 

>smo-MIR171c (-69.60)   [smo-miR171c:184-204]

acggaucaucgaaaucgaugugu  uu          a           c   acaccaucuacaaacaccgaaaagagaagcuuuacgauggucuagcaaaguucuucucgc 
                       gc  ugauauuggc ugauucaaucc aug                                                            g
                       ||  |||||||||| ||||||||||| |||                                                            a
                       uG  ACUAUAACCG GCUGAGUUagg uac                                                            a
-------------guugcguuag  -U          C           u   ggucgugggaaacgagcagguacggugcuuuaaaaccgaucuagaagcauuccgaagaga 

>smo-MIR171d (-54.30)   [smo-miR171d:73-93]

---ug     u            ga         ca  u      c    ca 
     cgagg augugauauugg  uggcucaau  ga ggcguu gcug  a
     ||||| ||||||||||||  |||||||||  || |||||| ||||  u
     guucc UACACUAUAACC  GCCGAGUua  cu ucgcga cgac  g
aaaag     -            GC         aa  c      c    uc 

>smo-MIR396 (-63.00)   [smo-miR396:11-30]

---uc    gc                     C g        ccaaggcaggaggaucagaaaacguugugguauuucucauc 
     ucau  uuUUCCACGGCUUUCUUGAAC u gugcucuu                                         u
     ||||  ||||||||||||||||||||| | ||||||||                                         c
     ggua  aaagggugucgaaagaacuug a caugagaa                                         c
aggcc    ac                     a g        ugaccacucaaagaaaguuccccucugguuccugcucugcu 

>smo-MIR408 (-53.00)   [smo-miR408:77-98]

--    a  a           -   a  u     g u        c  a    aa 
  auuu gu guagcuaggga gag ca ugcau a agcuacac aa gagc  c
  |||| || ||||||||||| ||| || ||||| | |||||||| || ||||  c
  ugaa cg cGUCGGUCCCU CUC GU ACGUa u ucggugug uu cucg  u
au    c  g           U   C  C     g u        -  c    gc 

>smo-MIR536 (-63.60)   [smo-miR536:116-136]

--------------     uu        u                ugcuuggaagucuggaaaguuuucuuucacgcuccacug 
              guguu  ugaugcac cagcuugacacggccg                                       a
              |||||  |||||||| ||||||||||||||||                                        
              cgcaa  aCUACGUG GUCGAACUGUGCUggu                                       u
acuuuugcucguua     -c        U                ucucucucucucucucagucgugcguaacgucgucgucg 

>smo-MIR1080 (-50.80)   [smo-miR1080:70-91]

---       c     -              u   c ug    u    u  c 
   uuucauc agagg guuugcagauagug gug c  auuc auga gu u
   ||||||| ||||| |||||||||||||| ||| |  |||| |||| ||  
   aagguag UCUCC CAAACGUCUAUCAC Uac g  uagg ugcu ua a
cuu       -     A              U   a gu    u    u  g 

>smo-MIR1081 (-188.40)   [smo-miR1081:276-296]

-----ucuuu            cu         u     cu     g  --u  u  ccu        --     u         ca            c c    g        u        ---        c        -c     uugugaggguugccuuugauuuucugagcucucggaagugu 
          ugugaggcuugc  uugauucuc gagcu  gggag ug   ga uc   caccuccu  agcuc gagaaucaa  gcaagccucaca a aucg cuguucuu gaucucgu   cuugcagg gcgggauc  aggac                                         g
          ||||||||||||  ||||||||| |||||  ||||| ||   || ||   ||||||||  ||||| |||||||||  |||||||||||| | |||| |||||||| ||||||||   |||||||| ||||||||  |||||                                         a
          acgcuccgaacg  aacugagag uucga  uccuc ac   cu ag   guggaggg  ucgag CUCUUAGUU  CGUUCGGAGUgu u uagc gacgagga cuagggcg   ggacguuc ugcucuag  ucuug                                         u
agagcuacgc            uu         u     --     g  ucc  u  --u        uc     u         UC            u c    -        c        cgc        -        uu     ucgguuucuagagcuacacacgucucgagccaccacucccu 

>smo-MIR1082a (-79.27)   [smo-miR1082a:23-43]

ca  c             gc   CG            C    --      cuc     --------------------cuu  uu      u 
  ca auaagauuuugag  agG  UUGGCCUGCUGG CGGU  Ggcgag   gcgau                       ga  gagagc c
  || |||||||||||||  |||  |||||||||||| ||||  ||||||   |||||                       ||  ||||||  
  gu uguucuagagcuc  ucc  aaccggacgacc gccg  ccgcuc   cgcua                       cu  cucucg u
ag  -             ac   au            u    cu      ---     cgcuccucucucucucucucucu  cu      c 

>smo-MIR1082b (-58.30)   [smo-miR1082b:11-31]

-----------      gc                 C      cg   ucua   c 
           uuugag  agGUGUUGGCCUGCUGG CGGCGa  agc    gug c
           ||||||  ||||||||||||||||| ||||||  |||    |||  
           gagcuc  uccauaaccggacgacc gccgcu  ucg    cgc c
ucuuuguucua      ac                 u      --   -caa   g 

>smo-MIR1083 (-47.50)   [smo-miR1083:11-31]

----   ga  u      C           A    --    cu        
    ugg  gc caUAGC UGGAACGAAGC CGGU  ugug  ugguuuc 
    |||  || |||||| ||||||||||| ||||  ||||  |||||| u
    acc  cg guaucg acuuugcuucg gcua  auac  accgagc 
uagu   ug  c      u           c    aa    cu        

>smo-MIR1084 (-52.70)   [smo-miR1084:12-33]

-------ca       g     UCA               uc   ca    g -uuca   a 
         ugacaau cUAAC   GGUGGUAUGUUCCCA  caa  aaac u     ugg a
         ||||||| |||||   |||||||||||||||  |||  |||| |     |||  
         acuguua gauug   ucaccauacgagggu  guu  uuug a     acc u
cgaagaaac       g     -ug               ga   ag    g cgcuc   u 

>smo-MIR1085 (-63.10)   [smo-miR1085-5p:11-31] [smo-miR1085-3p:72-91]

       -   C          G          c  c       c       
aucucuc gag CCCUACAAGA AUAUCAAUCa gc acugcuc cuguaa 
||||||| ||| |||||||||| |||||||||| || ||||||| ||||| g
uagagag uuC GGGAUGUUCU UAUAGUUagu cg ugacgag gacauu 
       a   A          G          a  -       c       

>smo-MIR1086 (-54.90)   [smo-miR1086:11-31]

ga  --    a  -       UG UC        c    -g  g       u 
  gc  acga cU AGUGCCG  G  CUUUUGGC ccgu  ag agugaag g
  ||  |||| || |||||||  |  |||||||| ||||  || |||||||  
  cg  uguu ga ucacggc  c  gaaaaccg ggcg  uc ucacuuc a
aa  uc    c  a       gu uc        a    aa  g       g 

>smo-MIR1087 (-140.40)   [smo-miR1087:235-255]

cguuaacaucuuggaugaa       c a                   c        c              u                 a               ug c     c  - -g        aaauga      aa 
                   gugcuug g aagcgcuagcacuaguuug aaacucuc guaguaaauuaauu cagaaaucaaaggaaaa aaacacucaccaugg  g uaaag gg c  gaauggcu      gcuagu  c
                   ||||||| | ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  | ||||| || |  ||||||||      ||||||  u
                   cgcgaac c UUCGUGAUUGUGGUUAGAC Uuugagag cguuguuugguuaa guuuuuaguuuccuuuu uuugugagugguacc  c auuuc cc g  uuuacuga      cgauca  u
-------------------       a c                   A        a              u                 a               gu a     a  a ag        -----g      cu 

>smo-MIR1088 (-53.50)   [smo-miR1088-5p:17-37] [smo-miR1088-3p:66-86]

cgagca  c    a                       -  aca    cuc 
      gg cucu gaCAGAAGAAAGAGAGCACGCAU ga   cugc   u
      || |||| ||||||||||||||||||||||| ||   ||||    
      cc gagg CUGUCUUCUUUUUCUCGUGCGua cu   gacg   g
----uc  u    g                       g  -cc    uua 

>smo-MIR1089 (-112.40)   [smo-miR1089:145-165]

gacgaccucaa                               a       u       u         c   a           ag   gac   ca 
           ggaucaucuugcugcugugcaaacaauccua augaucu aaggaug gggagcaag aua aggauggagga  ggu   gag  c
           ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||| |||||||||||  |||   |||   
           ucuaguagaacgaugacaCGUUUGUUAGGAU UACUAGA uuccuac ccuucguuu uau uccuacuucuu  ucg   cuc  c
-----------                               C       c       c         a   c           cu   --u   aa 

>smo-MIR1090 (-42.20)   [smo-miR1090:11-31]

---    c  ag              C     A u      ac   c   a 
   gcgc ag  uUGAAAGCCAUUCU AACAA A uguagu  ucu gug u
   |||| ||  |||||||||||||| ||||| | ||||||  ||| |||  
   cgcg uc  agcuuucgguaaga uuguu u gcgucg  agg cau c
acu    -  cg              a     c c      ac   u   a 

>smo-MIR1091 (-110.80)   [smo-miR1091:18-38]

----  cc  ugg                             caaua      a    caua     a     ---          ccuucacugugucaugaagugccuggagguccucc 
    gg  uc   cauucgugCGGCAGUGAGGGAGGAUUUGC     auccau gugc    aagga gaugu   ugcugugguu                                   u
    ||  ||   |||||||||||||||||||||||||||||     |||||| ||||    ||||| |||||   ||||||||||                                   u
    cc  ag   guaagcacgucgucacucccuccuaaacg     uaggua cacg    uuccu cuaca   acgguaccga                                   g
cuua  cu  ---                             uucgc      c    uaac     c     cca          ucucgucacuuacaacgccaauacgcacgacguua 

>smo-MIR1092 (-73.50)   [smo-miR1092:24-44]

guuauguguuu  c                     A        c           au   aa gc   g  aaaa  g    a 
           gg gacgagguuUGACAGGAAUGC UUGGUGUU uuuucaccaaa  gcg  c  cau aa    ac uuca c
           || ||||||||||||||||||||| |||||||| |||||||||||  |||  |  ||| ||    || ||||  
           cc cugcuucgaacuguccuuacg aaccguaa aaaagugguuu  cgc  g  gua uu    ug aggu a
-----------  a                     a        u           --   gg gu   g  -aac  a    g 

>smo-MIR1093 (-55.00)   [smo-miR1093:21-41]

uuucaccaca             ---        U           -  uu 
          ccauuggugaUGG   AGGUGUCG UGCCAAGGAaa cu  c
          |||||||||||||   |||||||| ||||||||||| ||   
          gguaaccacuacc   uccacagc gcgguuccuuu ga  c
----------             guc        c           c  uu 

>smo-MIR1094a (-51.20)   [smo-miR1094a:73-92]

----aug  a              a      c    c ca   g       uu 
       uc caguacugugguac gagaag acau g  cug aggugau  g
       || |||||||||||||| |||||| |||| |  ||| |||||||  u
       ag gucAUGACACCGUG CUCUUC Ugua c  ggc uccauua  u
aaagcaa  -              C      A    c uc   g       cu 

>smo-MIR1094b (-52.90)   [smo-miR1094b:71-91]

----ua   -ca           uc        c    c ca   g       u 
      cgu   caguacugugg  cagagaag acau g  cug aggugau u
      |||   |||||||||||  |||||||| |||| |  ||| |||||||  
      gca   guCAUGACACC  GUCUCUUC Ugua c  ggu uccacua c
ggaaaa   aag           UU        A    c uc   g       c 

>smo-MIR1094c (-49.10)   [smo-miR1094c:73-93]

---gca  a           u    a    c    c ca   g       uu 
      uc caguacugugg acag gaag acau g  cug aggugau  c
      || ||||||||||| |||| |||| |||| |  ||| |||||||  u
      ag guCAUGACACC UGUC CUUC Ugua c  ggc uccacua  u
aagcaa  -           U    G    A    c uc   g       cc 

>smo-MIR1095a (-74.70)   [smo-miR1095a:129-149]

----u      u            a           gg  cggguuugcgaacuuccuggguggugauaugcuccgcugag 
     gucuug guuugggaauaa ggaaccuagga  gc                                         c
     |||||| |||||||||||| |||||||||||  ||                                         u
     cggaac UAAACCUUUGUU CCUUGGAUccu  ug                                         c
guggc      u            C           ag  uaaagaaggccgccacguucguucacuauuaaugugacgag 

>smo-MIR1095b (-103.22)   [smo-miR1095b:249-269]

----  gu     c    u                cu   auuu  ugcu   u     uc     guccuuccaccgccauuccagucuuugcagucacuguuuccgaaaaguuucgagaaaaggaagaacacugcuuggacg 
    ag  uugag uugg aacaggggaaccuaga  gua    gc    ugc uugau  ccuuc                                                                              c
    ||  ||||| |||| ||||||||||||||||  |||    ||    ||| |||||  |||||                                                                              a
    uc  aacuU AACC UUGUUCCCUUGGAUcu  cgu    cg    aug agcua  ggagg                                                                              a
augg  ug     A    U                --   -guu  ---u   u     ga     ucugcuuucgucuguucuuugagcuuuaggaaccgcguuuacguguuuagguuuggugguguugcucaguucugcucg 

>smo-MIR1096 (-69.40)   [smo-miR1096:69-89]

--uau                    c          a           a 
     ggggaauuucugaagcaagg ggcagcaaga accuccaugag g
     |||||||||||||||||||| |||||||||| ||||||||||| a
     ucucuUAAGGACUUCGUUUC CCGUCguuuu uggagguacuc c
aaacc                    U          a           u 

>smo-MIR1097 (-246.20)   [smo-miR1097:11-31]

gcucaag                             -c    aa    c                cc       aaa    a  a                                                                 -a    -     gucuucuuccauagaucauccaucaguggcagu 
       ucaUAGCCAUUGUUGUUGUUGGAAuuccu  ugaa  gacu cuagccuccuuggcag  auagcaa   ugcc uu auuuuuuugucgacauucuucuuccagccagauuauccauuagugggaguggcgggaucacaaga  ccaa aggca                                 g
       |||||||||||||||||||||||||||||  ||||  |||| ||||||||||||||||  |||||||   |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||                                  
       aguaucgguaacaacgacaaccuuaagga  acuu  cuga gaucggaggaaucguc  uaucguu   acgg aa uaaggaaacagcuguaagaagaaggucgguuuaguagguagucacccucaccguucuaguguucu  gguu uccgu                                 u
-------                             aa    -c    a                ua       guc    c  c                                                                 cg    c     gacgaugguucgaacggugcaagggauaagggu 

>smo-MIR1098 (-49.20)   [smo-miR1098:12-32]

-  -   -ca   c     A        C      u           a     
 gu ggc   ucg UGAUG CGUUUGUG UGAAAU ugggaaugggu aagg 
 || |||   ||| ||||| |||||||| |||||| ||||||||||| ||| g
 cg cug   ggc acuac gcaaacac acuuua acccuugccca uucc 
a  u   caa   -     c        u      u           c     

>smo-MIR1099 (-146.70)   [smo-miR1099:25-45]

----------      uc                      A            UC     ag       c      ca       ----c                c  a              ----a     aa ag  u 
          gauggu  uucuuugucccaagcaUAUAGC AUGGUGUUUUUG  uacaa  ugggugu uugggg  ggagagg     ucgagaauuuuaguac ug agaaaaucuaugcu     ccuag  g  ag g
          ||||||  |||||||||||||||||||||| ||||||||||||  |||||  ||||||| ||||||  |||||||     |||||||||||||||| || ||||||||||||||     |||||  |  ||  
          uuauca  aagaaacaggguucguaugucg uaucacggaaac  auguu  auccgca aacccc  ccucucc     aguucuuaaagucaug au uuuuuuagaugugg     ggauc  c  uc g
aauugaacua      ga                      c            ga     ca       a      ac       aacau                c  c              aagug     ga ga  a 

>smo-MIR1100 (-60.60)   [smo-miR1100:13-34]

         u      A    CA           uc    ---     c   u  ucc 
auaccaagu ucUGUC CGGA  GAACCCCACUC  uacu   ucgag gau ga   a
||||||||| |||||| ||||  |||||||||||  ||||   ||||| ||| ||   c
ugugguuca ggacag gccu  cuuggggugag  auga   agcuc uua cu   u
         c      c    -c           ga    agu     -   c  uuc 

>smo-MIR1101 (-46.00)   [smo-miR1101-5p:11-31] [smo-miR1101-3p:66-86]

---ugugugc             CG         c    aaaa     g 
          uugGGCAUUCUCU  AAACAAGUG agcg    acgca a
          |||||||||||||  ||||||||| ||||    |||||  
          AACCCGUAAGAGA  UUUGUUcac ucgc    ugcgu g
uaaaaagguc             CG         a    -cuc     c 

>smo-MIR1102 (-46.70)   [smo-miR1102:18-38]

aagcau    ug g            C           u   g    agua  g 
      gauu  g aguAGCUAUUGC AGCGUCAAGCA gau ugcg    gu u
      ||||  | |||||||||||| ||||||||||| ||| ||||    ||  
      cuga  c ucaucgauaaug ucguaguucgu cua acgu    ua g
-----u    ca g            a           c   -    guag  c 

>smo-MIR319 (-97.40)   [smo-miR319:53-72]

--uu uu  c                    cu     -----      g    u  -u  U   G   AC       UC  cg    -     aaguuacaaugccaguuu 
    g  cg gggagcuuccuuuaguucaa  caggu     ggagcu gaga gg  cc GCU CCG  UCAUGCA  Cg  uacc uugga                  c
    |  || ||||||||||||||||||||  |||||     |||||| |||| ||  || ||| |||  |||||||  ||  |||| |||||                   
    c  gu cccucgagggaagucagguu  gucca     uuucga cucu uc  gg cga ggc  aguacgu  gc  augg gaccu                  a
cacc uu  u                    cc     gcuag      g    c  uu  u   g   gu       uc  ag    u     guuuucuucgagagaaag 

>smo-MIR1104 (-54.20)   [smo-miR1104:82-102]

g     uug  u                    aaaagaaggaagagcaccauuaca 
 gaaua   gc gaaggagaaagagcggcugc                        u
 |||||   || ||||||||||||||||||||                         
 cuugu   cg CUUCCUUUUUCUUGUCGACG                        u
-     cga  c                    Ccuucuuccuugaggaggaggagg 

>smo-MIR1105 (-72.00)   [smo-miR1105:96-116]

----a     a    a       a            a           uucacauucaaagcagugau 
     cucgu uucc aagcagc aucuucacgucc aagcagcaauc                    c
     ||||| |||| ||||||| |||||||||||| |||||||||||                     
     gagca aagg uuCGUCG UAGAAGUGUAGG UUcgucguuag                    u
cugaa     g    g       C            C           acgagggcgacgugguucaa 

>smo-MIR1106 (-37.90)   [smo-miR1106:85-105]

uuga   ----a  c        a            g g    uug     aag  ug aa 
    ucg     uc cacauuaa accuuuaaaggu a uauu   cguga   cu  g  a
    |||     || |||||||| |||||||||||| | ||||   |||||   ||  |   
    agc     AG GUGUAAUU UGGAAAUUUcca u auaa   gcacu   ga  u  a
--aa   aauac  U        G            a g    --a     -gg  gu ag 

>smo-MIR1107 (-46.00)   [smo-miR1107:11-31]

---         u          C        -   g    u   u 
   agguuucgg GGUGCUGGUU CAAUUCAG GUc cggc gcg u
   ||||||||| |||||||||| |||||||| ||| |||| ||| c
   uucaaaguu ccgcgacuaa guuaaguc cgg gucg ugu c
cgu         c          a        u   -    u   c 

>smo-MIR1108 (-163.30)   [smo-miR1108:169-189]

gugaguc                -                 u           cua   u   -----------          c    -uaaau  cac          a  a                       cc  gcaugaccucuagcuc 
       uguuuaggcaagugaa uauguugcucuuguauu guugcucugga   agg ugc           cgcaaauagc uuug      gc   agugguccug ug gggguuauguuucucagcucaag  ca                c
       |||||||||||||||| ||||||||||||||||| |||||||||||   ||| |||           |||||||||| ||||      ||   |||||||||| || |||||||||||||||||||||||  ||                 
       acaaauccguucacuu auacaacgagaacauaa cgacgggaccu   ucc acg           gcguuuaucg aaac      cg   uuacuaggac ac CCCCAAUACAGAGAGUCGAGUuc  gu                a
---uugu                u                 c           -ca   c   uuguaugaauc          c    ccccgu  -ua          g  c                       ca  aacgaaggucuuccag 

>smo-MIR1109 (-59.80)   [smo-miR1109:22-42]

cauua    c  ug    a                     A    g   u        u 
     cuaa gu  ugca gaUAGUGGGAGAUUUUGUGUA Cuaa acu uuaguuuu g
     |||| ||  |||| ||||||||||||||||||||| |||| ||| |||||||| a
     gauu cg  acgu cuaucacucucugaaacacau gauu uga aaucagaa u
----c    a  gu    c                     c    a   u        u 

>smo-MIR1110 (-78.50)   [smo-miR1110:13-33]

caacac         A         G                     uacu 
      aggguuGCU GGGGCAGUG UCAAGGAucugggggcccaug    g
      ||||||||| ||||||||| |||||||||||||||||||||     
      ucccaacga ccccgucgc aguuccuggauccucggguac    c
------         c         g                     cuuc 

>smo-MIR1111 (-194.40)   [smo-miR1111:194-214]

--u           c                         ag                 -  ug   a     u     auc          c c                                    gggcuaugaaacaucuuaggaag 
   gcaacuggcuu cauugcuuaaugucuaugugacuuu  aaccacugccggaaaag gu  ucg aggug acaua   accacaacag c gguuuuguuuggucauggcuaugaaacaucccagga                       g
   ||||||||||| |||||||||||||||||||||||||  ||||||||||||||||| ||  ||| ||||| |||||   |||||||||| | ||||||||||||||||||||||||||||||||||||                        
   uguugaccgaa gugacgaguugcagauacauugaaa  uuggugacgguuuuuuu ca  agu uucac uguau   ugguguuguc G CCAGGACGAAUCAGUACCGauacuuuguaggguccu                       u
ugu           a                         cu                 a  gu   c     c     ---          a A                                    ggaccagccugguccuauauccg 

>smo-MIR1112 (-57.90)   [smo-miR1112-5p:11-31] [smo-miR1112-3p:65-85]

---aucua  gg                         a      a     
        ca  gACUUUGUUAUGGCAUUCCUCGcuc acugcu cagg 
        ||  ||||||||||||||||||||||||| |||||| ||| g
        gu  CUGAAACAAUAUCGUAAGGAgcgag ugacga guca 
uuucauua  -A                         g      c     

>smo-MIR1113 (-83.10)   [smo-miR1113:12-32]

----    u  uuc                   -  Uu       a   ccauucgauucguucgucucaaucagcaucagcaguaugacgaucucucgauucagagcaacaaa 
    cuug cu   uUGAGCAGUCAUAAGGUAG CC  uguggaa gcc                                                                 g
    |||| ||   ||||||||||||||||||| ||  ||||||| |||                                                                  
    gaac ga   gacucgucaguauuccguc gg  acaucuu cgg                                                                 u
cuua    -  --c                   a  -u       a   uguucuugaaacuucgaagaagaaguugaaguugaagaagaaaaagagagcaaaaggacguuccu 

>smo-MIR1114 (-61.24)   [smo-miR1114:63-83]

-----------                          a          u uuucaa 
           auuccauuccugcucaauguuuuguc cuuggcucga g      a
           |||||||||||||||||||||||||| |||||||||| |       
           uaagguaagGACGAGUUACAAAACAG GAAccgagcu c      g
cuagaccuagc                          G          c uacunu 

>smo-MIR1115 (-87.50)   [smo-miR1115-5p:11-31] [smo-miR1115-3p:74-94]

ccag    g                                         u 
    caag uUGAGCUCAGGCACUUUGGUGGccuggggggcuaagguuau c
    |||| |||||||||||||||||||||||||||||||||||||||||  
    guuc aACUCGAGUCCGUGAAACCACUggacuccccgauucuaaua a
ucgg    g                                         a 

>smo-MIR1103 (-98.40)   [smo-miR1103-5p:11-32] [smo-miR1103-3p:165-188]

--   c                 C    --             ag  c  a     g    a   ----     g    u       a  agua     cu  g 
  gcc augaacAAGAGUGCACC CCUU  UCCAAUcgguuaa  gu uu ggaua uugg guu    uaagc uccu ggguuug au    cuggg  gg u
  ||| ||||||||||||||||| ||||  |||||||||||||  || || ||||| |||| |||    ||||| |||| ||||||| ||    |||||  ||  
  cgg uacuUGUUCUUACGUGG GGAA  AGGUuagcuaauu  ca aa cuuau aacc caa    auucg agga cuuaaac ug    ggccc  cc g
cc   a                 A    AA             cg  a  c     g    c   uuac     -    -       c  -aag     -u  a 

>hiv1-mir-N367 (-21.70)   [hiv1-miR-N367:40-63]

--     -a   u   a  -    -  c   -    c 
  uuggc  gaa uac ca ccag gg cag ggau a
  |||||  ||| ||| || |||| || ||| |||| g
  gaucg  CUU GUG GU GGUU CC GUC ccua a
au     AA   C   -  A    U  A   A    u 

>hiv1-mir-H1 (-34.50)   [hiv1-miR-H1:2-21]

------u  -         -   C  --G      -      a u 
       CC AGGGAGGCG UGC UG   GCggga cugggg g g
       || ||||||||| ||| ||   |||||| |||||| | g
       gg uuuuuucgc acg au   cguccu gacucc c c
auugcgu  c         g   a  aua      a      - g 

>rno-mir-466b-1 (-35.70)   [rno-miR-466b:11-32]

--ca     a a             A   CCA          u 
    ugugu u UAUGUGUGUGUGU UGU   UGuguguaua g
    ||||| | ||||||||||||| |||   ||||||||||  
    acacg a gugcacacacaua aca   acauacauau a
acac     a c             c   cac          a 

>rno-mir-466b-2 (-41.60)   [rno-miR-466b:11-32]

--ca         A               CC         ua 
    uguguguaU UGUGUGUGUGUAUGU  AUGugugua  u
    ||||||||| |||||||||||||||  |||||||||   
    acgcauaua acauacacacauaca  uauacauau  g
acga         c               --         ua 

>rno-mir-466c (-41.04)   [rno-miR-466c:11-31]

--         a    A            C    guguau 
  ccugugugu UGUG UGUGUGCAUGUA AUGu      a
  ||||||||| |||| |||||||||||| ||||       
  ggacacaca acau acacacguacau uaca      u
ac         c    -            a    aagagg 

>rno-mir-743b (-31.00)   [rno-miR-743b:46-67]

--u  ag    g       ac       ca     uga 
   gc  ugcu uguucag  ugguguc  ucaug   a
   ||  |||| |||||||  |||||||  |||||   a
   cg  augA AUAAGUC  ACCACAG  AGugu   u
acu  ga    G       AU       AA     uua 

>rno-mir-871 (-37.60)   [rno-miR-871:11-33]

--u   g   cc       AU            C   a 
   gca ugc  UAUUCAG  UGGUGCCGGUCA Aug a
   ||| |||  |||||||  |||||||||||| ||| g
   cgu aug  auagguc  accacggucagu uac u
acu   a   ua       au            a   a 

>rno-mir-872 (-31.49)   [rno-miR-872:11-31] [rno-miR-872*:50-71]

--    u     A        U  --         accucau 
  aacu guuag AGGUUACU GU  UAGUUCAGG       u
  |||| ||||| |||||||| ||  |||||||||        
  uugg caaUC UCCGAUGA CG  AUCAAGUcc       a
ua    u     C        -  UU         gucuuuc 

>rno-mir-874 (-37.30)   [rno-miR-874:45-66]

--      cug   c   a  ca        a ag  a 
  uuagcc   cgg ccc cg  ccagggua g  ag c
  ||||||   ||| ||| ||  |||||||| |  || u
  ggucgg   GCC GGG GC  GGUCCCGU C  uc c
cg      ucA   A   A  CC        - cu  g 

>rno-mir-877 (-38.10)   [rno-miR-877:1-20]

-GUA      AU  C C          agguaggccuugcggg 
    GAGGAG  GG G AGGGgacaca                u
    ||||||  || | ||||||||||                 
    cuccuc  cc c ucuccugugu                c
gacc      --  u u          acagguucccgggugu 

>rno-mir-878 (-30.70)   [rno-miR-878:46-67]

--u  ag g           -   c     gu   g  a 
   gc  u cuuuaucuagu ugg uguca  cac ug a
   ||  | ||||||||||| ||| |||||  ||| || a
   cg  a gAGAUGGGUCA ACC ACAGU  Gug ac c
acu  gg g           U   -     AC   a  u 

>rno-mir-879 (-33.40)   [rno-miR-879:11-31]

--uu    a   AG      AU    C        gga 
    cuag ucc  AGGCUU  AGCU UAAGCCuu   u
    |||| |||  ||||||  |||| ||||||||    
    gguc agg  uucgaa  ucgg auucggag   a
cagc    g   cu      cu    u        aaa 

>rno-mir-880 (-26.80)   [rno-miR-880:47-68]

--   ac   aa        u   uau    c  uuccu 
  ugc  ugc  uacucaga ugg   gagu ac     a
  |||  |||  |||||||| |||   |||| ||      
  acg  acg  AUGAGUCU ACU   CUCA ug     a
ac   ga   AG        U   UAC    U  uacaa 

>rno-mir-881 (-25.70)   [rno-miR-881:46-67]

--u   g   aa         ug  a     c        
   gca uac  uauucagag  gu gcagu acuuuau 
   ||| |||  |||||||||  || ||||| |||||| u
   ugu aug  AUAAGUCUU  CG UGUCA ugaaauc 
acu   a   AG         UA  G     A        

>rno-mir-883 (-38.50)   [rno-miR-883:46-67]

-u  -acu             a  a          uuu 
  gc    caaugcugagaga gu gcaguuacuu   a
  ||    ||||||||||||| || ||||||||||   c
  cg    guUAUGACUCUCU CA CGUCAAUgaa   u
cu  gaau             A  A          uuc 

>mmu-mir-582 (-33.94)   [mmu-miR-582-5p:11-32] [mmu-miR-582-3p:50-71]

-----         aUA            CA     Uaaucu 
     acucuuugg   CAGUUGUUCAAC  GUUAC      a
     |||||||||   ||||||||||||  |||||       
     ugggaAACC   GUCAACAAGUUG  Caaug      a
aaacg         CAA            UC     uuaauc 

>mmu-mir-467e (-33.60)   [mmu-miR-467e:11-32] [mmu-miR-467e*:48-69]

--gc          --------AA     A C             ua 
    cugugugcAU          GUGUG G AUGUAUAUGUgug  u
    ||||||||||          ||||| | |||||||||||||  a
    gacacacgua          CACAC C UACAUAUAcguau  u
uaca          cacaUAUAUC     A A             uu 

>rno-mir-147 (-22.80)   [rno-miR-147:48-69]

--  u    c   ug   a  c         ---aac   a 
  ua gaau uag  gaa ca uucugcaca      ucg u
  || |||| |||  ||| || |||||||||      |||  
  au uuua AUC  CUU GU AAGGCGUGU      agu u
gg  u    c   GU   C  A         Gaccgu   u 

>rno-mir-17-2 (-32.40)   [rno-miR-17-5p:11-33]

-u   cc    -CA        A        G   cu  u 
  ugg  augu   AAGUGCUU CAGUGCAG UAG  uc u
  |||  ||||   |||||||| |||||||| |||  ||  
  acc  uaca   uucacgaa gucacguc auc  ag g
gu   au    uuc        c        -   -u  a 

>rno-mir-181d (-36.10)   [rno-miR-181d:11-33]

---       auuA         G UG          guga  ag 
   ggucaca    ACAUUCAUU U  UCGGUGGGUu    gg  a
   |||||||    ||||||||| |  ||||||||||    ||   
   ucggugu    uguaaguag g  ggccacccag    cc  a
ggg       -cac         g --          ---a  ag 

>rno-mir-182 (-30.50)   [rno-miR-182:11-35]

--ucc      uU      AU   --AG   U   -----A        
     caccgu  UUGGCA  GGU    AAC CAC      CCGguaa 
     ||||||  ||||||  |||    ||| |||      |||||| g
     guggua  aaccgu  uca    uug gug      ggccaug 
ugaau      uc      --   gaua   -   gcccag        

>rno-mir-188 (-30.00)   [rno-miR-188:11-31]

---c  uc   ca  UC         GU      -cgag u 
    cc  ucu  CA  CCUUGCAUG  GGAGGG     c c
    ||  |||  ||  |||||||||  ||||||     | u
    gg  agg  gu  gggacguac  ccuccu     g c
gagu  -u   ac  uu         ac      caaaa u 

>rno-mir-190b (-28.20)   [rno-miR-190b:11-31]

--u   u     U  U            A     -  aaa 
   gcu cugug GA AUGUUUGAUAUU GGUUg uu   u
   ||| ||||| || |||||||||||| ||||| ||    
   uga gacac cu uacaaacuguaa ucaac aa   u
gag   c     u  -            a     c  gua 

>rno-mir-196c (-32.40)   [rno-miR-196c:11-32]

-   -      g     A    C         - Gc ugg 
 cug agugaa UAGGU GUUU GUGUUGUUG G  c   c
 ||| |||||| ||||| |||| ||||||||| |  |   u
 gac ucacuu gucca caaa cacaacaac c  g   u
u   g      a     c    c         a aa ucu 

>rno-mir-301b (-27.90)   [rno-miR-301b:45-67]

--gcug        c    uagguugc    c  ug    g 
      cgggugcu ugac        acua ug  cugu g
      |||||||| ||||        |||| ||  |||| a
      gucuaCGA ACUG        UGGU AC  GACg a
accagg        A    -----UUA    A  GU    a 

>rno-mir-375 (-33.80)   [rno-miR-375:45-66]

--   g   c    a      ccu  c     c  gac 
  ucc gcc cgcg cgagcc   cg acaaa cg   c
  ||| ||| |||| ||||||   || ||||| ||    
  ggg cgg GUGC GCUCGG   GC UGUUU gc   u
cg   a   A    -      CUU  U     u  gag 

>rno-mir-380 (-30.50)   [rno-miR-380:11-32]

--acc   a      GUU       GA       c   u 
     uga aagAUG   GACCAUA  ACAUGCG uac u
     ||| ||||||   |||||||  ||||||| |||  
     acu uucuac   cugguau  uguaugc gug c
cuauu   c      -ac       ga       u   u 

>rno-mir-384 (-26.40)   [rno-miR-384-5p:11-33] [rno-miR-384-3p:52-73]

--aau    a     A       C     C    -Ug   aa 
     cagg auUGU AACAAUU CUAGG AAUG   uau  u
     |||| ||||| ||||||| ||||| ||||   |||  g
     gucc UAACA UUGUUAA GAUCC UUAc   aug  u
acaau    g     C       A     -    uga   gu 

>rno-mir-410 (-30.20)   [rno-miR-410:46-66]

--ac       g    ug      a  a     - uuu 
    uugagga aggu  ucugug ug guucg c   a
    ||||||| ||||  |||||| || ||||| |   u
    aacuuuU UCCG  AGACAC AU UAAgc g   u
ccau       G    GU      A  A     a uaa 

>rno-mir-411 (-24.80)   [rno-miR-411:11-31]

--cuug   a a    A      A A       - uuu 
      gag g UAGU GACCGU U GCGUACG c   a
      ||| | |||| |||||| | ||||||| |   u
      cuc c auca cuggca a uguaugc g   c
cuauga   c a    c      c a       a ugu 

>rno-mir-423 (-43.70)   [rno-miR-423:47-69]

--     u            -ag   g    a     cua 
  gaagu aggcugaggggc   aga cgag cuuuu   u
  ||||| ||||||||||||   ||| |||| |||||   u
  cuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
uc     u            GAG   G    -     ccu 

>rno-mir-425 (-30.70)   [rno-miR-425:11-33]

--  u  u    AAU        CAC     U  ----Ag   g 
  ag gc uugg   GACACGAU   UCCCG UG      ugg c
  || || ||||   ||||||||   ||||| ||      |||  
  uc cg gacc   cugugcua   agggc ac      acc a
uu  u  u    cgc        -ua     u  cgaaga   c 

>rno-mir-434 (-29.80)   [rno-miR-434:50-71]

-   ug     -c  c    c c      ug      -u u 
 guu  aacca  ag ucga u augguu  aaccau  g c
 |||  |||||  || |||| | ||||||  ||||||  | a
 uaa  uuggU  UC AGCU A UACCAA  UUggug  c a
c   gu     CC  -    C C      GU      cu a 

>rno-mir-455 (-37.60)   [rno-miR-455:11-32]

---  u ug  c          U      A   C   ga 
   gg g  ag gUAUGUGCCU UGGACU CAU Gug  c
   || |  || |||||||||| |||||| ||| |||  g
   cu c  uc cauauacggg accuga gua cac  c
gaa  c gu  a          c      c   c   ga 

>rno-mir-463 (-24.00)   [rno-miR-463:47-68]

-ac   -g          u   u    ---      g  a 
   ccu  uuuuaccuaa uug uguc   caucau ua a
   |||  |||||||||| ||| ||||   |||||| || a
   gga  gaGAUGGGUU AAC GCAG   GUagug au u
cuc   ag          U   C    AUA      a  u 

>rno-mir-471 (-30.90)   [rno-miR-471:11-32]

--   ag g  u          A UG        a  ac 
  agc  u cu UACGUAGUAU G  CUUUUCAC uu  a
  |||  | || |||||||||| |  |||||||| ||   
  ucg  a ga auguaucaua c  ggaaagug aa  c
au   ga g  c          c gu        a  aa 

>rno-mir-484 (-38.20)   [rno-miR-484:46-67]

------gcaugca    a     ggcggggccucgcggccc 
             ggga ggggg                  u
             |||| |||||                   
             CCCU CCCCU                  g
aaacuccaaaUAG    -     GACUCGGACUgcuccguc 

>rno-mir-495 (-26.00)   [rno-miR-495:49-70]

--uac u          u  -       --a   u    uuu 
     c gaaaagaagu gc ccauguu   uuu ucgc   u
     | |||||||||| || |||||||   ||| ||||    
     g uuuUUCUUCA CG GGUACAA   AAg agug   a
cuaua c          -  U       ACA   c    uuu 

>rno-mir-500 (-36.40)   [rno-miR-500:49-70]

-cc  c     -         uau ug     uuag   uau 
   cc ucucu aauccuugc   c  ggugc    ugc   c
   || ||||| |||||||||   |  |||||    |||   u
   gg agagA UUGGGAACG   G  CCACG    Acg   c
agu  a     C         --- GU     --UA   uaa 

>rno-mir-532 (-27.70)   [rno-miR-532-5p:11-32] [rno-miR-532-3p:48-69]

--uu       c  U      A    A   ---CU     c 
    uucucuu CA GCCUUG GUGU GGA     GUuga a
    ||||||| || |||||| |||| |||     |||||  
    gagaggA GU CGGAAC CACA CCU     uaauu u
gaac       C  U      C    C   CCcau     c 

>rno-mir-598 (-33.30)   [rno-miR-598-5p:11-32] [rno-miR-598-3p:48-69]

-- c     c           C      ---U  G    ga 
  g ugaug ugGCGGUGAUG CGAUGG    GC AGcu  a
  | ||||| ||||||||||| ||||||    || ||||  a
  c acuac AUUGCUACUGC GCUACU    cg ucgg  a
ua u     u           U      GCAU  -    gu 

>rno-mir-671 (-47.00)   [rno-miR-671:50-70]

---ca        a   a      ga           -u   g 
     ggaagagg gga gcccug  ggggcuggagg  gau g
     |||||||| ||| ||||||  |||||||||||  |||  
     cuuucuCC CCU CGGGAC  UCUUGGCCUcc  uug a
ccgag        A   -      --           uu   u 

>rno-mir-672 (-41.82)   [rno-miR-672:11-33]

--      g        U     U           guaua 
  ccuuua uuuUGAGG UGGUG ACUGUGUGUGA     c
  |||||| |||||||| ||||| |||||||||||     a
  gggagu aaagcuuc accgc ugacacacacu     u
gu      g        u     -           auuua 

>rno-mir-673 (-39.50)   [rno-miR-673:11-32]

--  cu a    CU     CU -       U     uc  ga 
  gc  g gggg  CACAG  C CGGUCCU GGAGc  ca  g
  ||  | ||||  |||||  | ||||||| |||||  ||  a
  cg  c cccc  guguc  g gucaggg ccucg  gu  a
cc  uu c    ac     uu a       -     uu  aa 

>rno-mir-674 (-52.70)   [rno-miR-674-5p:11-32] [rno-miR-674-3p:46-67]

--           CA             G     ag  u 
  ccugagccuuG  CUGAGAUGGGAGU GUGUA  gc c
  |||||||||||  ||||||||||||| |||||  ||  
  gggcucggAAC  GACUCUACCCUCG CACgu  ug a
gu           AA             A     -a  g 

>rno-mir-708 (-44.10)   [rno-miR-708:11-33] [rno-miR-708*:57-78]

-ga        A           A     C  G gg   a  a 
   cugcccuc AGGAGCUUACA UCUAG UG G  uag ug c
   |||||||| ||||||||||| ||||| || |  ||| || u
   gacgggaG UCUUCGAGUGU AGAUC AC c  guu ac u
ggg        A           C     A  a aa   c  g 

>rno-mir-742 (-32.90)   [rno-miR-742:46-67]

--   ag           -      u   aa    guga 
  ggc  ugcuuuacuca cauggu gcu  ucac    a
  |||  ||||||||||| |||||| |||  ||||    a
  ucg  augAAAUGGGU GUACCA CGA  AGug    u
ac   aa           U      C   -A    aaug 

>rno-mir-743a (-26.50)   [rno-miR-743a:45-66]

--u  ag    g       a      c  g    guuu 
   gc  ugcu uauucag uuggug cu ucau    a
   ||  |||| ||||||| |||||| || ||||     
   cg  gugA AUGGGUC AACCGC GA AGua    u
acu  ag    G       A      A  A    agaa 

>rno-mir-758 (-30.90)   [rno-miR-758:47-68]

-     g     --    u      aga   c   c   a 
 ggugc ugagg  uggu gaccag   gca acg uau u
 ||||| |||||  |||| ||||||   ||| ||| |||  
 cuaug acucC  AUCA CUGGUC   UGU Ugc gug u
u     -     CA    C      CAG   U   c   u 

>rno-mir-760 (-44.00)   [rno-miR-760-5p:12-33] [rno-miR-760-3p:49-68]

--g   cg    c    U      AC       C    acc 
   gcg  ucgc CCCC CAGGCC  CAGAGCC Ggau   u
   |||  |||| |||| ||||||  ||||||| ||||   c
   cgu  agcg GGGG GUCUGG  GUCUCGG Cuua   a
caa   aa    A    U      --       -    aag 

>rno-mir-770 (-52.20)   [rno-miR-770:11-32]

--     c       A      GUCU  G       a    
  cugug ccccAGC CCACGU    GG CCACGug gca 
  ||||| ||||||| ||||||    || ||||||| || a
  gacgc ggggucg ggugca    cc ggugcac cgc 
gg     c       a      --gu  g       -    

>rno-mir-873 (-33.80)   [rno-miR-873:11-31]

--   u ca   G A         G        a  ga 
  gug g  uuu C GGAACUUGU AGUCUCCU uu  a
  ||| |  ||| | ||||||||| |||||||| ||  a
  cac c  aag g ccuugaaca ucagagga ag  a
aa   c ac   g c         g        c  gu 

>rno-mir-92b (-51.12)   [rno-miR-92b:52-73]

---  u    a     ga       c            uucuu 
   gg gggc ggagg  cgggacg ggugcaguguug     u
   || |||| |||||  ||||||| ||||||||||||     c
   cc cccg CCUCC  GCCCUGC UCACGUUAUaac     c
gcu  -    g     -G       -            cgucc 

>rno-mir-488 (-23.40)   [rno-miR-488:49-69]

--aa  c   cu  c   u      a  c        -  u 
    uc ucu  cc aga aauggc cu ucaaacaa gu u
    || |||  || ||| |||||| || |||||||| ||  
    ag aga  GG UCU UUGUCG GA AGUUuguu ca c
ucuc  a   CU  U   -      -  A        a  u 

>rno-mir-652 (-51.70)   [rno-miR-652:51-71]

--a                  gaggg           ca  g 
   ugcacugcacaacccuag     ggugccauuca  ua a
   ||||||||||||||||||     |||||||||||  || c
   augugacGUGUUGGGAUC     CCGCGGUAAgu  au u
aac                  ----A           ua  a 

>tae-MIR159a (-84.30)   [tae-miR159a:154-174]

-- ug        a   u     uga  -    uac  ga    u   -u  a   g    u     guuc    uau   a     auag 
  g  gagcuccu uca uccaa   ag gguc   cg  aggg uug  gc gcu cucg ucaug    ccac   ccu ucucc    a
  |  |||||||| ||| |||||   || ||||   ||  |||| |||  || ||| |||| |||||    ||||   ||| |||||    a
  c  CUCGAGGG AGU AGGUU   uc ccag   gc  uccc agc  cg cga gagc aguac    ggug   gga agagg    a
ua GU        A   U     -Ug  g    -uc  --    u   uu  c   g    c     guuu    ucc   g     agca 

>tae-MIR159b (-111.30)   [tae-miR159b:230-250]

-------                  aa     u   gc   -    c   ug    g     u    g uc    u      cu   uguucaucauucagcucgagaucugaaagaaacuacuccaauuua 
       gagcuccuuucgguccaa  agggg guu  ugu gggu gau  agcu cuggg caug a  ccgu agccua  cca                                             u
       ||||||||||||||||||  ||||| |||  ||| |||| |||  |||| ||||| |||| |  |||| ||||||  |||                                              
       CUCGAGGGAAGUUAGGUU  Ucucc cag  aca ccca cua  ucga gaccc guac u  ggua ucggau  ggu                                             a
ucuacGU                  --     -   gu   u    a   cg    g     c    g uc    u      ag   uguugcucaugagguaguaaaaggauagauguguguaugauaauc 

>tae-MIR160 (-63.14)   [tae-miR160:22-42]

------------------     u  aaaca    ga     C       C         cu    -   cu      ucccca 
                  agagg ga     augg  uaUGC UGGCUCC UGUAUGCCA  cgcg uag  gccaac      a
                  ||||| ||     ||||  ||||| ||||||| |||||||||  |||| |||  ||||||       
                  ucucu cu     ugcc  guacg accgagg gcgugcggu  gcgc auc  cgguug      a
ucucucucucucucucuc     -  cucuc    -a     a       a         ag    c   -u      cguucc 

>tae-MIR164 (-101.00)   [tae-miR164:3-23]

          C             c  uuucca  u    auuc      uc       ccggcugccgcggccuugccu 
ggUGGAGAAG AGGGCACGUGCAu ca      gc cggc    ccggcg  cggccgg                     g
|||||||||| ||||||||||||| ||      || ||||    ||||||  |||||||                      
ccaccucuuc uuccguguacgua gu      cg gccg    ggccgc  gccggcc                     g
          u             c  ---ucc  -    --gc      gu       uagcucgcugcgugauggguc 

>tae-MIR167 (-44.00)   [tae-miR167:18-38]

----------c       ----     c      A      A   ------------     UAgc 
           ugcccaa    gggaa gagUGA GCUGCC GCA            UGAUC    u
           |||||||    ||||| |||||| |||||| |||            |||||    c
           acggguu    cccuu uucacu cgacgg cgu            acuag    c
ucuucaucaac       gccg     c      c      -   cgcaaagaacaa     ugag 

>tae-MIR171 (-58.40)   [tae-miR171:89-109]

-------     u  u    au         u  a    c     -    -   ugccggccggccgua 
       uggaa gg cacu  gauguuggc cg cuca ucaga ccac gcc               g
       ||||| || ||||  ||||||||| || |||| ||||| |||| |||                
       acuuu uc guga  CUAUAACCG GC GAGU AGUcu ggug ugg               c
cguacgu     c  -    cu         U  C    U     c    g   cguacgucuacguac 

>tae-MIR399 (-58.90)   [tae-miR399:108-126]

ucgugugugaaucaca     c      c        guggcaugcauguacauaugauggugguagccu 
                gggcg uucucc uuggcacg                                 g
                ||||| |||||| ||||||||                                  
                CCCGU AAGAGG AACCGUgc                                 g
----------------     U      A        gugccgaacgaucguucgacguggcgugcgagu 

>tae-MIR408 (-88.50)   [tae-miR408:136-156]

auuuugugagu          ga     ---ca    u  agca    a     u      -a  aacaaaauuuaccaccugauuaugagaagagggagag 
           ggagaggggg  ggaga     ggga gg    gagc aggga gaggca  gc                                     a
           ||||||||||  |||||     |||| ||    |||| ||||| ||||||  ||                                      
           ucucuccccc  ccucu     cccu cc    cuCG UCCCU CUCCGU  CG                                     g
-----------          uc     cuaaa    c  ----    G     U      CA  UCccucccucguuguugucguugucuucgagaccguu 

>tae-MIR444 (-114.60)   [tae-miR444:153-173]

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gacucgagauaugcauguggcggcaccgagcaugaggcaacaacu    u             g        -  acaccugcauuacuugcaaaca 
                                                                                                                                                                                                                                                                                    gcau acuugcggggaag cgcaagua gg                      a
                                                                                                                                                                                                                                                                                    |||| ||||||||||||| |||||||| ||                       
                                                                                                                                                                                                                                                                                    cgua ugaacguucuuuc guguucau cc                      g
acuauauagauauguacaacgauggacggucaucuacuuuuguauucauaagaugacggaacgaagauuguacacguauacgucaacagcucauuaauauaacgaaauuuaaucgugucauucgguuaguaaagaucuaguuaaaacaucuuguacaaaauuucaaaucccuuugauugucuugaaauacaaaaauuucaaaucccuuugauugucuugaaauacaaaaaagacuaucgaaaccguuucccucCGUCGUUCGAACUCCGUCGUUga    c             g        a  acuagaagauaauuaaaacgcg 

>tae-MIR1117 (-55.14)   [tae-miR1117:19-42]

-- u     aauggga     -   AC     C                    a  ucu 
  g uugaa       ccuuU AGU  CGGUU GUGGCACGAACCgggacuaa gg   u
  | |||||       ||||| |||  ||||| |||||||||||||||||||| ||   c
  c gauuu       ggaaa uca  gccaa caccgugcuuggccuugauu cc   a
cg u     cgaggag     a   gc     a                    a  cca 

>tae-MIR1118 (-35.10)   [tae-miR1118:22-44]

-   g --       -u       g  CU   UU  -    U  AG      uguuguaggcaaugauuguu 
 gaa c  acgugga  agaggaa CA  ACA  AU GGAA GG  GGAgua                    u
 ||| |  |||||||  ||||||| ||  |||  || |||| ||  ||||||                    g
 cuu g  uguauuu  uuuccuu gu  ugu  ua ucuu cu  ucucgu                    c
g   g uu       uu       -  -c   uu  g    u  gg      ccuagauauuuuagaaguuc 

>tae-MIR1119 (-76.60)   [tae-miR1119:84-107]

-a      g   guga   g  a    gcgcggaggaggagcuggcugggucagcgucgacggcggcggccgugugcuccuacgUGGCAC 
  gcguca cgu    ggc cc gcgc                                                               G
  |||||| |||    ||| || ||||                                                               G
  ugcagu gcg    cug gg cgcg                                                               C
gg      -   ----   g  -    uaucgugagggugagguguggaucauuuuucaucguggugaggugaccGACUGAGUCGUAGUG 

>tae-MIR1120 (-63.50)   [tae-miR1120:70-93]

-----g   cc  cc   c                c             ca         gu 
      cgg  gc  ggg agguacucccuccguc cauaauauaagaa  uuuuugaca  g
      |||  ||  ||| |||||||||||||||| |||||||||||||  |||||||||   
      guc  cg  ccc uuuaugaggGAGGCAG GUAUUAUAUUCUU  Aaaaacugu  u
cacuaa   cu  -a   -                A             AC         ga 

>tae-MIR1121 (-65.30)   [tae-miR1121:51-72]

ua    u                       u                 u 
  uaua guacucccucuguaaagaaauau agaguguuuagaucacu a
  |||| ||||||||||||||||||||||| ||||||||||||||||| A
  augu caugagggaggcauuucuuuauA UCUCGCAAAUCUAGUGA G
--    -                       U                 U 

>tae-MIR1122 (-137.83)   [tae-miR1122:96-115]

auaaguacucccucuguuccuaaauacucccuccgucccaaaaauuuuggcuuagauuugucuaaauacguauguaucaagucauguuuuaguauUAGAUACAUCCGUAUCUAGAcuaaucuaagacaagaauuuugggacggagggaguauaa                     caa            u   uauagacauauuuuag 
                                                                                                                                                          gucuuuuuagagauuccacua   acuacauacgga gua                a
                                                                                                                                                          |||||||||||||||||||||   |||||||||||| |||                g
                                                                                                                                                          cggaagaaucucuaaggugau   ugauguaugcuu cau                u
-------------------------------------------------------------------------------------------------------------------------------accaugugggagacaaggauuuauaua                     acc            -   uuuacucacuuagaug 

>tae-MIR1123 (-153.62)   [tae-miR1123:188-210]

         a                  -auaaau             c       a          ga                       a    -      -    a 
aaaaaaauu uaugagaccaggucucau       caggugagacccg ccugaug augacaugug  auucacaaaucacaaagcaucua ucuc uccccc ccug u
||||||||| ||||||||||||||||||       ||||||||||||| ||||||| ||||||||||  ||||||||||||||||||||||| |||| |||||| ||||  
uuuuuuuaA AUACUCUGGUCCAGAGUG       guccacucugggu ggacuac uacugugcac  uaaguguuuaguguuucguaggu gggg gggggg ggac u
         G                  CCUaauc             a       c          ag                       -    u      u    u 

>tae-MIR1124 (-39.54)   [tae-miR1124:83-104]

au   a   c  aaaggaa     c   ga     auc  uc    a   cgccacgccauugucg 
  uac uga uc       cggcc ugg  gcucg   cu  ucac ucc                c
  ||| ||| ||       ||||| |||  |||||   ||  |||| |||                g
  aug gcu ag       gccgg aCC  UGAGC   GA  AGUG AGG                u
uc   -   c  aucgaag     a   --     ---  GA    C   ACGcagcaccccuacc 

>tae-MIR1125 (-69.30)   [tae-miR1125:16-39]

u       -                    AAC  C       a     a    a cg       -a   c 
 uuggccg uaaauuuAACCAACGAGACC   UG GGCGGga caaaa uuau u  cugaauu  uau a
 ||||||| ||||||||||||||||||||   || ||||||| ||||| |||| |  |||||||  ||| a
 aacuggc auuuaaauugguuguucugg   ac ccgcccu guuuu gaua g  gacuuaa  aua a
a       c                    cuu  a       c     g    c au       gc   a 

>tae-MIR1126 (-73.27)   [tae-miR1126:40-62]

              c                a    a   CC                   Gcaaaa  a   aaucuaca 
guacucucuccguu cuaaauauaagucuuu uaga auU  ACUAUGGACUACAUACGGA      ua aug        c
|||||||||||||| |||||||||||||||| |||| |||  |||||||||||||||||||      || |||         
uaugagggaggcaa gauuuauauucagaaa aucu uaa  ugauacuugguguaugcuu      au uac        u
              a                c    c   aa                   acauac  c   guaaaauc 

>tae-MIR1127 (-63.80)   [tae-miR1127:22-40]

-----        u   cucaac                       c   -      --    ------         aau  au 
     acauuaga gua      uacUCCUUCCGUUCGGAAUUACu guc caagaa  auaa      auguaucua   gc  u
     |||||||| |||      ||||||||||||||||||||||| ||| ||||||  ||||      |||||||||   ||   
     uguaaucu uau      augagggaggcaagccuuaauga cag guuuuu  uauu      uacauagau   ug  u
cuagg        -   ------                       a   u      ac    uuuacc         -gu  au 

>tae-MIR1128 (-99.50)   [tae-miR1128:31-51]

       a  a     g     ugcuu   UAC               A     c              a   aaa                 acua 
auaugag gc ugggu agagg     agu   UACUCCCUCCGUCCG AAaua uugucaucaaaaug aua   aaggggauguaucuaga    a
||||||| || ||||| |||||     |||   ||||||||||||||| ||||| |||||||||||||| |||   |||||||||||||||||    a
uguauuu cg guucg ucuuc     ucg   augagggaggcaggc uuuau aacaguaguuuuac uau   uuccccuacauagaucu    a
       g  -     g     ----u   uua               c     c              c   --c                 acau 

>tae-MIR1129 (-86.40)   [tae-miR1129:25-48]

cggccgccauucagccagaagaagCAGCGAGCCAGCGGAGACCGGCAGccaaccaagggcgucgucgcuccaccauggaaucagcugcugauaugcucgaacacgaccugcaagcuucaugua      a  c cc     -c   -uc   ga 
                                                                                                                           ucugca ca c  ugcuc  uca   cac  c
                                                                                                                           |||||| || |  |||||  |||   |||  c
                                                                                                                           agacgu gu g  acgag  agu   gug  c
----------------------------agcagguaccaccugccuccgucaacccucaccuagaccgugcucgagagaaggggauuauucgggcuccagaagaaucuauagcuccuaacggg      c  c -a     aa   cca   aa 

>tae-MIR1130 (-51.80)   [tae-miR1130:16-38]

aaa   cuu     -  -                           auaa  uauguu  u  gua 
   ugu   auacu cC CUCCGUCUCGUAAUGUAAGACGuuuuu    gc      ag cu   a
   |||   ||||| || |||||||||||||||||||||||||||    ||      || ||   a
   acg   uauga gg gaggcaggguauuacauucugcaaaaa    cg      uc ga   a
gca   -uu     u  u                           ----  ----uu  u  aaa 

>tae-MIR1131 (-51.80)   [tae-miR1131:4-25]

---------------------------------------               G    --U    uuu 
                                       cauUAGUACCGGUUC UGGC   AACC   a
                                       ||||||||||||||| ||||   ||||   g
                                       guaaucauggccaag accg   uugg   c
accucccccgggucugacuguuguaggacggugguggga               g    ugc    cca 

>tae-MIR1132 (-108.00)   [tae-miR1132:134-152]

      c         c                                                      c  cu 
uacucc uccguuuca aauguaagucauucuagcauuuuccacauucauauagguguuaaugaaucuaga au  a
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   
auGAGG AGGCAAGGU UUACauucaguaagauuguaaaggguguaaguauauccacaauuacuuagaucu ua  u
      A         A                                                      a  ua 

>tae-MIR1133 (-83.00)   [tae-miR1133:29-50]

-----     uua   a  gug    --     auCAUA                      u      aagcuuguucc              c     - ua 
     acuuc   gug ua   guca  auuac      UACUCCCUCCGUCCGAAAaagu uguccc           ucaaauggauguau uagca c  a
     |||||   ||| ||   ||||  |||||      |||||||||||||||||||||| ||||||           |||||||||||||| ||||| |   
     ugaag   cac au   uagu  uaaug      augagggagguaggcuuuuucg acaggg           aguuuacuuacaua aucgu g  c
aucgu     uca   -  --a    uu     ------                      c      -----------              c     a uu 

>tae-MIR1134 (-60.60)   [tae-miR1134:124-147]

---------------------ccacgc      cau                         g aauggauuuggaggaggaggaggaggaggagcugcug 
                           guccgg   ucuucuucuucuuguuguuguuguu u                                     u
                           ||||||   ||||||||||||||||||||||||| |                                     u
                           cggguu   AGAAGAAGAAGAACAACAACAACga g                                     g
auguacaacaacgucgacgucgaaguu      --U                         g aggaggcggcggaggaauaaacaacaugauccucgua 

>tae-MIR1135 (-74.20)   [tae-miR1135:78-101]

           a                u    u               a uaa 
cuacucccucc uucggaauuacuuguc cgga auggauguaucuaga c   a
||||||||||| |||||||||||||||| |||| ||||||||||||||| |    
gaugagggAGG AAGCCUUAAUGAACAG GUCu uaucuacauagaucu g   a
           C                C    u               - cau 

>tae-MIR1136 (-69.90)   [tae-miR1136:23-46]

             c                  U          C    ugua 
uacucccuccguu cgaauuacUUGUCGCAGG AUGGAUGUAU UAga    u
||||||||||||| |||||||||||||||||| |||||||||| ||||    u
augagggaggcaa guuuaaugagcagcgucu uaccuacaua aucu    u
             a                  u          a    ugau 

>tae-MIR1137 (-43.64)   [tae-miR1137:73-92]

cac   gacgacg     a    cu   acucccuccguuccaaaauggaugacccaaguuuguacuaaaguUAG 
   gau       auuac uagc  ugu                                               U
   |||       ||||| ||||  |||                                                
   cua       uagug aucg  gca                                               A
---   aaaggaa     -    uu   acauaaugaugaugagggaggcaaggucuuauCUACUGAGUUGAAAC 

>tae-MIR1138 (-50.45)   [tae-miR1138:140-162]

aucuuguaua   c   c   ga        a    gaca   cu                ga  u   c c   -u      cuauuuuuuuuauccu 
          ggu ugu uag  cacaucua augu    uaa  augucacaucuaagcu  ug caa u ugu  uguggu                a
          ||| ||| |||  |||||||| ||||    |||  ||||||||||||||||  || ||| | |||  ||||||                g
          uca aca auu  guguagau uaca    AUU  UACAGUGUAGAUUCGa  au guu a aua  acaucg                u
----uucuag   a   a   aa        c    -AAA   CC                gg  -   u u   uu      uuauucuuuauuuuuu 

>tae-MIR1139 (-59.42)   [tae-miR1139:11-32]

gccac     A       AUA  C         acacauaucccuagaacuauauaacuaccuucauagkgguagcaacauaagugugguaucaugcaaagcuucauuua 
     agugg GAGUAAC   CA UAGUAACAu                                                                             u
     ||||| |||||||   || |||||||||                                                                             u
     ucacc cucauug   gu aucauugua                                                                             a
-----     -       -aa  u         gcuccucucuccaucaaacucauugaaucgaucaaugauauuguaguguacaggguuacguuauacucagauauugg 

>ppt-MIR477b (-71.41)   [ppt-miR477b:34-53]

------au    ugga    ggga     g  c   a         U  A       C     -------  u            gu ucu  a 
        gugu    acuu    agcag ug uug ucCUCUCCC CA AGGCUUC Aacag       ca gagcuaguuuua  g   ca a
        ||||    ||||    ||||| || ||| ||||||||| || ||||||| |||||       || ||||||||||||  |   || u
        cacg    ugag    ucguc ac aac aggagaggg gu uccgaag uuguc       gu cucgaucggagu  u   gu a
cuagucuc    ---g    ----     g  u   g         u  c       a     uagacuu  c            ug -cu  u 

>cre-MIR1142 (-56.30)   [cre-miR1142:14-34]

  u         cAA       -A  C           cu 
cg ggcaggggu   GGUGUGG  UG GGCAUGGGugg  a
|| |||||||||   |||||||  || |||||||||||   
gc ccguccccg   ucgcacc  ac ccguacccgcc  a
  c         acc       ag  -           cc 

>cre-MIR1143 (-76.80)   [cre-miR1143*:1-19] [cre-miR1143:138-161]

             A    Aau      a     ggcagugguaccgccacugccuauauuuauauacuccgaaggaacuu 
AGGACGUCCCCUU CGGG   auaaau uuagu                                               g
||||||||||||| ||||   |||||| |||||                                                
UCCUGCAGGGGAA GCCC   UAUUua aauca                                               u
             -    GUU      a     ccuauaaauauauguuauuuauuuaaacaacggagcggauagccgau 

>cre-MIR1144a (-139.50)   [cre-miR1144a.2:34-53] [cre-miR1144a.1:77-97]

       -  ug a u  u     g      g      A         C  GA    g       ggcg     n   A              GCU   g ug u     --a ga    guu 
cggcggc gu  g c gc ggggu cagcag cuUGGA CCGGGCACG AG  Ggug guuuugu    gcagg agC GGCAGCGCGGGGCU   GGu g  g ggagg   g  ugaa   c
||||||| ||  | | || ||||| |||||| |||||| ||||||||| ||  |||| |||||||    ||||| ||| ||||||||||||||   ||| |  | |||||   |  ||||    
gccgucg cg  c g ug cccca gucguu gaaccu ggccugugc uc  ccac caaaacg    cgucc uug ccgucguguccugg   cca c  c uuucc   c  acuu   g
       u  gu - c  u     a      a      c         c  ac    a       agga     g   c              ---   - gu -     caa aa    acc 

>cre-MIR1145 (-307.70)   [cre-miR1145.2:208-228] [cre-miR1145.1:255-275]

    a      aggg                c         a                                      g     a           c        g         a   cc        c                        u     a 
ccca cgugga    caugaccuccucccuu ugcagaccu ggucagaaggaccaggaccugcugggccccaaggucau gucgc augcuggucaa gccaccga agggucaac cca  cagcagcu ugggcggacaucaagcagaagacg ccucc g
|||| ||||||    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||| |||  |||||||| |||||||||||||||||||||||| |||||  
gggu gcaccu    guacuggaggagggaa acgucugga ccagucuuccuGGUCCUGGACGACCCGGGGUUccagua cggcg uacgaccaguu cGGUGGCU UCCCAGUUG GGU  gucgucga acccgccuguaguucgucuucugc ggagg c
    -      --ga                c         a                                      a     c           c        G         C   ua        c                        c     g 

>cre-MIR1146 (-29.00)   [cre-miR1146:1-20]

A       G  -C         ---ua   c  u 
 UGGGUCC AU  GGGAAGCUu     uca ac c
 ||||||| ||  |||||||||     ||| || g
 acccggg ua  cccuucgaa     agu ug g
-       g  ca         caaca   a  c 

>cre-MIR1147 (-86.80)   [cre-miR1147.1:10-30] [cre-miR1147.2:23-42]

   a                 C                   Aa    a 
gcc uaauuAGUGCCAGCGCG UCUCGGCCAAGUCUGGCAG  gcgg g
||| ||||||||||||||||| |||||||||||||||||||  |||| g
cgg guuaaucacggucgcgc agagccgguucagaccguc  cgcc a
   g                 a                   gc    g 

>cre-MIR1148 (-113.70)   [cre-miR1148.1:14-34] [cre-miR1148.2:35-55]

                              A   U               C    ---    gga  g a 
cagggacuguuuaCCAACGUGCAGGGGGAC UGG GGAGAUCCUCCUGUC GGCU   accu   gc c a
|||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||   ||||   || | g
gucccugacaaaugguugcacgucccccug auc ccucuaggaggacag ccga   ugga   cg g c
                              a   n               a    uuu    gag  g u 

>cre-MIR1149 (-96.60)   [cre-miR1149.1:23-44] [cre-miR1149.2:83-103]

    c    c      g                       C           aagg 
cgac gccu gggccc cuaugUCGGACAACACCGACCCC AGCccgccaac    a
|||| |||| |||||| ||||||||||||||||||||||| |||||||||||    g
gcug cgga cCUGGG GGUACAGUCUGUUGUggcugggg ucgggcgguug    a
    a    c      A                       -           cggu 

>cre-MIR1150 (-331.40)   [cre-miR1150.3:295-315] [cre-miR1150.2:331-350] [cre-miR1150.1:337-357]

       c        ag                                    a                 c        a             u         c       -  u    c            c       c   -------- g        g            ---     ag       -----   -   a 
ggacgcg agcggagc  auccccgucauaccccgcuuggugcagcgcgucaau ucccucuuggcgagcuu gcaaauag gucggccccaguu ccgcugcag ugggcuu cg gcuu cagcuuccugca ggcucgc guc        c agcgccuu cuugccgcccga   uacgc  uucggau     ucg uau c
||||||| ||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||| || |||| |||||||||||| ||||||| |||        | |||||||| ||||||||||||   |||||  |||||||     ||| |||  
ccugcgc ucgccucg  uaggggcaguauggggcgaaccaCGUCGCGUAGUUA AGGGAGAGCCGCUcgaa cguuuguc cAGCCGGGGUCAG GGCGACGUc acccgaa gu cgaa gucgaaggacgu ccgagcg cag        g ucgcggaa gaacggugggcu   augcg  gagccua     agc aua g
       u        ca                                    C                 a        c             C         c       a  c    a            a       a   ucuccgaa g        g            acu     cu       acuca   u   c 

>cre-MIR1151a (-91.90)   [cre-miR1151a:14-34] [cre-miR1151a*:79-96]

         g         G      A       a   -    a         c 
ccggccgcg cagUCCGGG CUCAUA CCUGUUG cgc gcgc gcccgcggg a
||||||||| ||||||||| |||||| ||||||| ||| |||| ||||||||| g
ggccggcgc gucaGGCCC GGGUGU GGGCAau gcg cgcg cgggcgucc u
         a         A      G       c   g    c         c 

>cre-MIR1151b (-101.90)   [cre-miR1151b:31-51] [cre-miR1151b*:96-115]

    u  g  c   uca      a  g         G              a   -    a         c 
gugg gu ug cgc   ccggcc cg cagUCCGGG CUCAUAACCUGUUA cgc gcgc gcccgcagg a
|||| || || |||   |||||| || ||||||||| |||||||||||||| ||| |||| ||||||||| g
cacc cg ac gug   ggucgg gc guCAGGCCC GGGUGUUGGGCAau gug cgcg cgggcgucc u
    c  g  a   uac      c  a         A              c   g    c         c 

>cre-MIR1152 (-122.80)   [cre-miR1152:91-111]

                                                             cac 
ggggguauucacggcaccgucaagacggcgcaccuucuuaacguccuucggugcuugcuug   a
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
cuuccauaagugccguggcAGUUCUGUCGCGUGGAAGAAUugcgggaagccacggacgaac   c
                                                             uca 

>cre-MIR1153 (-101.60)   [cre-miR1153.1:5-26] [cre-miR1153.2*:25-45] [cre-miR1153.2:91-112] [cre-miR1153.1*:111-129]

                    U           UA    C          g              ug 
caaaUGGGCCAUCGUAUUAC AUCAGUGCUGC  GCAA UACAAGgcgg caugaaggucgauu  a
|||||||||||||||||||| |||||||||||  |||| |||||||||| ||||||||||||||   
guuuaCUCGGUAGCGUAAUG UAGUCACGAUG  CGUU AUGUUccgcc guacuuccagcuag  u
                    U           GC    A          a              cc 

>cre-MIR1154 (-90.60)   [cre-miR1154:21-40] [cre-miR1154*:83-101]

u      c                    A  C                 a           
 guaaug gggaaaaugguaACUUAGUC UC CAAGGCGUguaucaccc uguuacgggc 
 |||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||| g
 cauugc cccuuuuaccauUGAAUCAG AG GUUCCGCacauaguggg acaaugucca 
a      u                    C  U                 c           

>cre-MIR1155 (-60.80)   [cre-miR1155:75-96]

u a     g      aa        c a     c      g       a 
 g ggcuc uuccuc  gcaggacu a agaac cgauca cuugucg g
 | ||||| ||||||  |||||||| | ||||| |||||| |||||||  
 c cCGAG AAGGAG  CGUCCUGA u uuuug gcuagu gaacagc c
a c     G      CA        U c     u      g       a 

>cre-MIR1156 (-235.40)   [cre-miR1156.1:196-216] [cre-miR1156.2:241-261]

      c                      c   -caa       u       c   c                        u   a      a cau                          a        a 
ucugau ugccugaagcuccaguugaaac ugg    ggucgug gcccucu cac gacaugcgaggguccaccgccgug ggc caggcu c   gguagccagucugcgcaccugcagcc gcagcuga u
|||||| |||||||||||||||||||||| |||    ||||||| ||||||| ||| |||||||||||||||||||||||| ||| |||||| |   |||||||||||||||||||||||||| |||||||| u
agacua ACGGACUUCGAGGUCGACUUug acc    ccaguac cggggga GUG CUGUACGCUCCCAGGUggcggcac ccg guccga g   ccaucggucagacgcguggacgucgg ugucgacu c
      C                      -   cauc       u       A   C                        u   g      a cuu                          c        a 

>cre-MIR1157 (-114.40)   [cre-miR1157*:30-51] [cre-miR1157:92-112]

     ggc          a                               Cu         g      g 
uccug   gcaguguucc gcugcaguacACCUGGUCCCGCUAUUUGAAU  cgcugaucg caccau g
|||||   |||||||||| |||||||||||||||||||||||||||||||  ||||||||| ||||||  
aggac   cgucacaagg cgacgucauGUGGACCAGGGCGAUGGACUUa  gcgacuagu guggug g
     ---          c                               uc         g      g 

>cre-MIR1158 (-447.70)   [cre-miR1158:363-382]

   gug  c   -                              c                 a     g  c              gu    u                      c                              a          c     g                           u               gacucggcgucggagccagggcccucggcucgagcaucagucguccgcgcugcu 
ggc   cg agc ggcggccgccgcggcugaggaagccaugau gaggcagcgcaggccac uugua gc ugccgcgcggcugu  cacc cugaccaggugcgacgggaagc gggcugcuggggcugcugcugaccgccagu gccuccucca gucuu ugcuagcuccgcaagcaccgcguccuc auguccgucaugucg                                                      g
|||   || ||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||  |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||                                                       
ccg   gc ucg ccgccggcggcgccgacuccuucgguacua cuccgucgcguccggug aacau cg acggcgcgccgaca  gugg gacugguccacgcugcccuucg cccgacgaccccgacgacgacuggCGGUCA CGGAGGAGGU CAgga acgaucgaggcguucguggcgcaggag uauaggcaguacagc                                                      c
   aga  u   g                              c                 c     a  a              gc    c                      a                              C          U     g                           u               nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagu 

>cre-MIR1160 (-453.60)   [cre-miR1160.2:116-136] [cre-miR1160.1:332-351] [cre-miR1160.3:373-393]

                                                                                                                                                                                                 u  c     -----      c c   a 
uuugcaugcucucgcccgcuacacaaacacgaaugcucaaacgcucccuucccgcacggguccuuccggcugcgccggucaagccugcccugcuuaaaaagggcaaaguucgggcUGACAAGGAAGCAGAGCGGAUccuccagagccucacagaccucaagaaggucggguucacaagcaaaugacgccugcu aa caggu     cguugc g cgg a
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||     |||||| | ||| a
agacguacgagagcgggcgauguguuugugcuuacgaguuugcgAGGGAAGGGCGUGCCCAGGAAggccgacgcggccaguucggaCGGGACGAAUUUUUCCCGUUucaagcccgacuguuccuucgucucgccuaggaggucucggagugucuggaguucuuccagcccaaguguucguuuacugcggacga uu guccg     gcgacg c gcu a
                                                                                                                                                                                                 -  c     acggu      a u   g 

>cre-MIR1161a (-31.00)   [cre-miR1161a:58-76]

     gugac    cac     -   --   uu   aa   c      aca 
gccag     acca   accua cug  gag  cuc  cag uaggug   c
|||||     ||||   ||||| |||  |||  |||  ||| ||||||    
ugguu     uggu   uggau GAC  CUC  GAG  GUC AUccac   c
     -----    --u     C   AA   UU   --   -      aca 

>cre-MIR1162 (-106.90)   [cre-miR1162*:28-49] [cre-miR1162:95-116]

    --  c      a             C  C                  c  cg  u  a        a 
gcgg  gg ccugac ccacugcggccgc GG CUAAAUUACUACAACACG cg  cc gg cccgaggg g
||||  || |||||| ||||||||||||| || |||||||||||||||||| ||  || || |||||||| g
cgcc  cc ggacug gguggcgcuggCG CC GAUUUGAUGAUGUUGUgc gc  gg cc gggcuccc a
    uu  u      g             U  C                  u  au  c  a        c 

>cre-MIR1163 (-337.50)   [cre-miR1163.2:101-121] [cre-miR1163.1:273-293]

                                                 a                              c                                           c        -u    gcauagggucuuaacugccagguugaagucgcacacgcggaagaccuugcugccaucagg 
auugacaacgcgcccgagcgccggcgcaccggcaagaacaaggacaagu ugagaugcugccguaccccggcaacacgcu auggaugaggcugaccugaAGGGCAUGCUGCGUGCCAUGGcgc cuucaucg  gcgc                                                            c
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||                                                            g
uaacuguugcgcgggcucgcggccgcguggccguucuuguuccuguuca acucuacgacggcauggggccguugugcga uaccuacuccggcuggacuucccguaCGACGCACGGUACCGCG GAAguagu  cgug                                                            c
                                                 a                              a                                           A        uu    gacuugcgagcgccgauguacgugaaacuggacuucgggcgguuggacgacaugcuguag 

>cre-MIR1164 (-138.70)   [cre-miR1164:11-31]

        u                         g         a                           --   u   g 
ggugcucu cUGGUGCAACAGGCCAGUGGUUuga ugguggucg cggcaauugcuucagucuuacuugcuu  ggc uac u
|||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||| |||  
ucacgaga gaccacguuguccggucaccaaacu gccaccagc gucguuaacgaagucagaaugaacgaa  ccg aug a
        c                         a         c                           cu   c   c 

>cre-MIR1165 (-52.80)   [cre-miR1165:7-27] [cre-miR1165*:110-131]

  a     -                     cgccccauccugcguuugaaaacgcannnnnnnnnnn 
gc cuaUA CCGUACAAGCGGUCCGUCCug                                     n
|| ||||| |||||||||||||||||||||                                      
cg gGUAU GGCAUGUUCGCCAGGCAggac                                     n
  c     A                     nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn 

>cre-MIR1166 (-294.90)   [cre-miR1166.1:123-143] [cre-miR1166.2:240-258]

     --   -                c   cacag       c  c           c -a  a   a  a  -caa       a   c     g c    a                                           ---        uagcc  c       g      c   a     c 
gcaac  cac gccgcgcccugccggu ccc     uguauga uc uuuuaccgcua g  gg ugg cu ga    cccacgc ccg cuggu c gccg cucugcgccgggcccaugaggucaUGGACCUCGCGGCCCUGGA   GGcccugg     gc gcgccau ccaggc guc gcgcg c
|||||  ||| |||||||||||||||| |||     ||||||| || ||||||||||| |  || ||| || ||    ||||||| ||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||   ||||||||     || ||||||| |||||| ||| ||||| g
cguug  gug cggcgcgggacggccg ggg     auaugcu ag aagauggcgau c  cc acc ga cu    gggugcg ggc gacca g cggc gagacgcggcccGGGUACUCCAGUACCUGGAgcgccgggaucu   ccgggacc     cg cgcggua gguccg cag cgcgc g
     au   g                c   aucca       u  u           a gg  -   g  g  acug       g   c     g u    c                                           ccg        -uuac  -       a      a   c     a 

>cre-MIR1168 (-150.90)   [cre-miR1168.1:114-134] [cre-miR1168.2:135-151]

  -   u  gu  ----u      g  -  -               g     g  c                g                    -u   a 
gc ggc ug  cu     uccgcg ug gc cuccuccucaaucuu gccuu cg gcuucgggcuuggccu gucuacacagcaggcagggu  ggg a
|| ||| ||  ||     |||||| || || ||||||||||||||| ||||| || |||||||||||||||| ||||||||||||||||||||  ||| g
cg ccg gc  gg     gggcgu ac ug gaggaggaguuAGAA CGGAA GC CGAAGCCUGAACCGGA CAGGUGUgucguccguccca  ccc c
  u   u  ug  uaccu      g  g  c               G     G  A                A                    uu   u 

>cre-MIR1169 (-88.70)   [cre-miR1169*:6-27] [cre-miR1169:70-90]

                                            caa 
uacggUAUCCAGCAAGCAACAUCCACAuaagccgggguugguag   c
||||||||||||||||||||||||||||||||||||||||||||    
gugccaUAGGUCGUUCGUUGUAGGUGUauucggccccaaccauc   a
                                            uac 

>cre-MIR1170 (-121.30)   [cre-miR1170.2:102-121] [cre-miR1170.1:129-149]

        a    a                           cacaaugu               c            -----cu      
uaugggca uacu aaacuggcaacuuggcgauggacaugu        caguucugccguguu ggcugauugagc       ggucu 
|||||||| |||| |||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||       |||| c
auacccgu auga uuuGACCGUUGAACCGCUACCUGUacg        gucaAGACGGCACAA CCGACUAAcucg       ccaga 
        c    c                           --------               A            acuaacu      

>cre-MIR1171 (-97.40)   [cre-miR1171:16-38]

          u   g   A U  A    A U    U   ----  u        g  caa      g  u     ggu c      c c -cuu    uga 
gggaguggag gga UGG G GG GUGG G GGAG GGg    ag gggagugg ug   gggcgu gg gggug   g ggcggg g g    gucg   c
|||||||||| ||| ||| | || |||| | |||| |||    || |||||||| ||   |||||| || |||||   | |||||| | |    ||||    
cccucgccuc ccu gcc c cc cacc c cuuc ccc    uc cccucauc gc   uccgca cc uccgc   c ccgccc c c    cagu   a
          -   -   - -  g    - -    c   aacg  c        -  ---      a  -     aac u      - a uacu    ucc 

>cre-MIR1173 (-366.01)   [cre-miR1173:176-196]

     gcc    ----gu         u        u   c               c         u               u                              aagugugcu   c        a    --                 c             g                   A         c                  uauacca                    agaugucccugcacuagcaggcauucagac 
guuug   uggu      uuaauuugc uccacaca uug aaugccagcaaauug gcaugccaa gcauuuauagguuau gcauacgcccuggauuggcagcgugaguga         ggg ugcgugcu cugu  agaugaguggguacuug gaaauguauuggc gccauuguAUGGUUGCAAU GAAAUCAUG aggggauacugugaauua       uguaccaugugcaauguuuc                              a
|||||   ||||      ||||||||| |||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||         ||| |||||||| ||||  ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||       ||||||||||||||||||||                               
caaac   acca      aauuagacg aggugugu aac uuacggucguuuaac cguacgguu cguaaauauccaaua cguaugcgggaccuaaccgucguacucacu         ucc acgcacga gaca  ucuacucacccaugaac cuuuacauaaccg cgguaacauaccaauguua cuuuaguac uccccuaugacacuuaau       acaugguacacguuacaaag                              u
     ---    auguuc         u        c   a               a         u               u                              ---------   -        c    ug                 u             a                   c         u                  -------                    uccguacggacggucgcgacccuacgaccc 

>cre-MIR1172 (-92.70)   [cre-miR1172.2:4-24] [cre-miR1172.1:91-112]

       A     G  G     A      c                  c g        c         
cagUAGG UCGGA AC CAGUG Agcccc uugcugcugcgauucuuu c acuuacaa gugcucgu 
||||||| ||||| || ||||| |||||| |||||||||||||||||| | |||||||| ||||||| g
gucaucu agccu ug gucgc uCGGGG AACGACGACGUUAGGAga g uggauguu cacgagcg 
       a     g  a     c      C                  u -        a         

>cre-MIR1167 (-36.60)   [cre-miR1167:68-87]

   ca   ugc             ccaccgugcaccuucacgcu 
gag  uca   aucguuacacccc                    c
|||  |||   |||||||||||||                    a
uuC  AGU   UAGUAGUGUGGGG                    u
   AA   --U             uucguacgugucacgacgcg 

>cre-MIR1144b (-123.50)   [cre-miR1144b:34-55]

    a ca    --    -----a     c    c  a   G   -AG    G G  A      a   cu             g   u  u    c      acc 
gugc g  ggcu  uggu      ccggg acgc gg ggU GGU   UGUG C GC GGCAGc ggc  cgcggggcugcug ugg gg ggag aggacg   g
|||| |  ||||  ||||      ||||| |||| || ||| |||   |||| | || |||||| |||  ||||||||||||| ||| || |||| ||||||   g
cacg c  ccgg  gcca      ggccc ugcg cc cca cca   acac g cg ccgucg ccg  gcgccccggcgac acc cc ccuc uccugc   c
    a ac    gu    caaauc     a    a  c   a   cua    - a  c      a   uc             a   u  u    c      ccg 

>cre-MIR1159 (-149.70)   [cre-miR1159.2:32-52] [cre-miR1159.1:207-227]

  u  a                  a  u c -                        a       auucca  a    c    ---c       ---   cacg      a  c    u 
cg cg caaucgggcacuguggca ac g g ACAAUGCCAAUGGAGACGGAUgag ccguguu      gc gccg gacu    cuggaau   ggu    cggcug gg accc u
|| || |||||||||||||||||| || | | |||||||||||||||||||||||| |||||||      || |||| ||||    |||||||   |||    |||||| || |||| g
gc GC GUUAGCCCGUGACACCGU ug c c uguuacgguuaccucugccuacuc ggcacga      cg cggc cuga    gaccuug   ccg    gccgac cc uggg c
  c  C                  c  c a a                        c       caccga  g    a    cgcc       uag   --ua      c  a    u 

>aga-mir-1174 (-72.23)   [aga-miR-1174:146-167]

-     g  -         --uu      auc     accaaggcacuuucgucacuggcauuguaaggccgagcagaugcggccucaac 
 gcuac au cguggguau    uagauc   gacag                                                     c
 ||||| || |||||||||    ||||||   |||||                                                     c
 cggug ua GUACCCAUA    AUCUAG   CUguc                                                     a
g     g  a         CUUC      --A     auaccaaccugucccgugaccugcccucgucuacgcuuggugcccacucccaa 

>aga-mir-1175 (-32.60)   [aga-miR-1175:49-72]

        a     -    u     uc  a      ag u 
gauaugga uaagu ggag agugg  uc ucgcuu  c u
|||||||| ||||| |||| |||||  || ||||||  |  
cuauacuu AUUCA CCUC UCAUC  AG AGUgaa  g c
        A     G    U     UU  -      aa a 

>aga-mir-34 (-37.30)   [aga-miR-34:17-36]

gag   auaua   uc      U    U   C        ----   u 
   gca     cgc  UGGCAG GUGG UAG UGGUugug    ugg u
   |||     |||  |||||| |||| ||| ||||||||    ||| u
   cgu     gcg  gccguc cgcc auc accgacac    acc u
---   -aauc   cu      c    u   -        uucu   c 

>aga-mir-12 (-43.13)   [aga-miR-12:7-29]

ccgg  U      U   U            u  aauuuaaacgaccaucggacauggggg 
    gg GAGUAU ACA CAGGUACUGGUg gu                           c
    || |||||| ||| |||||||||||| ||                           u
    cc cucaua ugu guucaugacuau cg                           g
----  u      u   -            -  aacuggccccugucuucuccucaaccc 

>aga-mir-996 (-30.99)   [aga-miR-996:46-67]

       u      uu      a    uuuucag 
guaggcg gcaugu  ucuagu cacg       u
||||||| ||||||  |||||| ||||        
uaUCUGC CGUACA  AGAUCA GUgc       u
       U      UU      -    uuugaaa 

>aga-mir-989 (-50.50)   [aga-miR-989:91-111]

ggaca  aca    c        uac          ug uu    u   uacgcucguauaguauag 
     gu   gugg cacggggg   gccgcuacgu  c  ucac ugg                  a
     ||   |||| ||||||||   ||||||||||  |  |||| |||                   
     ca   uauc gugcccuc   UGGUGAUGCA  G  AGUG acc                  g
--caa  --c    u        cCA          GU -U    U   uagauacaaaugaaaauc 

>aga-mir-306 (-31.84)   [aga-miR-306:9-30]

    a   -UC      UG  U A        ugugug 
ucac ugg   AGGUAC  GA G CUCUCAGu      u
|||| |||   ||||||  || | ||||||||       
agug acc   uccaug  cu c gggagucg      a
    -   cca      gu  u c        uagaaa 

>ddi-mir-1176 (-70.90)   [ddi-miR-1176:21-41]

-    aa              C        A        A    u         u c uc 
 ccca  gucguaucaggugg CAAUUUUU UCAAGGAA GCug aucaucaag g c  c
 ||||  |||||||||||||| |||||||| |||||||| |||| ||||||||| | |  c
 gggu  cagcauaguccacc guuaaaaa aguuccuu cgac uaguaguuc c g  u
a    --              c        c        c    u         u u uc 

>ddi-mir-1177 (-57.20)   [ddi-miR-1177:19-39]

a   c       --ac    C   UU                a cu  a           u    cc    uu     u     aa 
 uca caaauaa    uaaa CAG  AGGGUUUAAUGGUUCu u  ca uuguuuuuuuu ggau  caaa  uaauc auuuu  u
 ||| |||||||    |||| |||  |||||||||||||||| |  || ||||||||||| ||||  ||||  ||||| |||||  u
 agu guuuauu    auuu guc  ucccgaguugccaaga a  gu aauaaaaagga ccua  guuu  auuag uaaaa  u
c   a       aauu    a   uu                a ag  c           -    uu    --     -     aa 

>mcmv-mir-m01-1 (-23.80)   [mcmv-miR-m01-1:3-24]

ca            C   GA    u     a 
  AGAGGAGAAUAA GUC  ACGG gauua u
  |||||||||||| |||  |||| |||||  
  ucuucucuuauu cag  uguc uugau c
uc            u   ac    -     a 

>mcmv-mir-m01-2 (-26.80)   [mcmv-miR-m01-2:5-27] [mcmv-miR-m01-2*:48-69]

gga     AG     G    G       u   uua 
   uGAAG  AAUCG GUUG AACGGUg uuc   a
   |||||  ||||| |||| ||||||| |||    
   GCUUC  UUGGC CAGC UUGCcau gag   g
ucA     CU     A    -       c   cau 

>mcmv-mir-m01-3 (-31.96)   [mcmv-miR-m01-3:3-25] [mcmv-miR-m01-3*:42-63]

-   G         C    G      aacaua 
 agC GUGAAGCGA UGUU CCUCGA      c
 ||| ||||||||| |||| ||||||      g
 uCG CACUUCGCU GCAA GGAGCu      g
c   G         C    -      cgcggc 

>mcmv-mir-m01-4 (-29.70)   [mcmv-miR-m01-4:4-26] [mcmv-miR-m01-4*:44-65]

ga   CU      A      -    --U    c 
  uUC  AUGCUA CACGUG CGCG   Gaca u
  |||  |||||| |||||| ||||   |||| a
  AAG  UACGAU GUGCGC GCgc   cugu c
cC   AU      G      C    ucu    a 

>mcmv-mir-m21-1 (-31.40)   [mcmv-miR-m21-1:51-71]

    c      c  a g    c    ------------   a 
cccc gcuuga cg g cccc aucg            ugc c
|||| |||||| || | |||| ||||            |||  
gggG CGAACU GC C GGGG UAgc            acg a
    C      U  A A    A    caccaucaaaug   c 

>mcmv-mir-m22-1 (-36.50)   [mcmv-miR-m22-1:44-65]

--          -  c    ca      c  ucac 
  cuggccucgg gc gacg  ggagcc gu    a
  |||||||||| || ||||  |||||| ||    a
  gACCGGAGCC UG CUGC  CCUUgg ca    u
ca          A  C    -C      -  caca 

>mcmv-mir-M23-1 (-37.70)   [mcmv-miR-M23-1-5p:6-27] [mcmv-miR-M23-1-3p:44-64]

          UA   -A     AA    gugu 
cuggcCUCGG  CGG  CGGGG  CCGU    a
||||||||||  |||  |||||  ||||    u
gaCCGGAGCC  GCU  GUCCU  ggca    u
          CG   GC     Cg    agug 

>mcmv-mir-M23-2 (-39.40)   [mcmv-miR-M23-2*:9-30] [mcmv-miR-M23-2:51-71]

     g     A  U U         -   ---    u 
ccccg cuUGA CG G CCCCUAUCG GUG   Guag u
||||| ||||| || | ||||||||| |||   ||||  
ggGGC GAACU GC C GGGGGUAgc cgu   cguc u
     -     G  U C         a   gug    a 

>mcmv-mir-M44-1 (-40.70)   [mcmv-miR-M44-1:42-63]

         a    c         a  u      
acgaccgcg gcuc ggagaagga ac gucgc 
||||||||| |||| ||||||||| || |||| u
ugcUGGCGC CGAG CCUUUUUCU Ug uagcc 
         -    A         A  c      

>mcmv-mir-M55-1 (-29.40)   [mcmv-miR-M55-1:3-24]

---ccU    AU    G    A   G     uauc 
      GGUG  CGGC UGCU GCC Ucgug    u
      ||||  |||| |||| ||| |||||    c
      ccgc  gcug gcga cgg agcac    a
ggagcg    cg    -    -   -     uucu 

>mcmv-mir-m59-1 (-36.90)   [mcmv-miR-m59-1:44-65]

   u   c            -cc     a  g 
cug cgg cgaggcacugcu   uuuug gc g
||| ||| ||||||||||||   ||||| ||  
GAC GCC GCUCCGUGACGA   aaaac ug u
   U   A            UUu     g  a 

>mcmv-mir-m59-2 (-20.20)   [mcmv-miR-m59-2:2-23]

-uC    A A   CUC    A C      g c 
   CCGA G GCC   ACAG G Cuaagu u c
   |||| | |||   |||| | |||||| | a
   ggcu c cgg   uguc c gauuca g u
aaa    - -   --c    g c      g c 

>mcmv-mir-M87-1 (-37.50)   [mcmv-miR-M87-1:4-26]

  -    CA         A     A  -gg ag 
cc gAGG  GCCGUCGGC GCGGC GC   c  c
|| ||||  ||||||||| ||||| ||   |   
gg cucc  cggcggccg ugccg cg   g  g
  u    -a         c     -  gga uu 

>mcmv-mir-m88-1 (-41.30)   [mcmv-miR-m88-1*:1-22] [mcmv-miR-m88-1:44-64]

        CC           ------      cg    
AUGACCGA  CCCUGACAUCG      Gcggcg  aga 
||||||||  |||||||||||      ||||||  || u
ugcuggcU  GGGGCUGUAGC      Cgccgu  uuu 
        CU           UGAAGA      au    

>mcmv-mir-M95-1 (-25.70)   [mcmv-miR-M95-1-5p:3-24] [mcmv-miR-M95-1-3p:41-62]

--a G       G  UG       UGuu  ca 
   c GUCGUGG CU  UGUCGCU    ug  a
   | ||||||| ||  |||||||    ||   
   G CAGCGCC GG  GCAGCGA    ac  u
agC G       A  CU       uacu  uu 

>mcmv-mir-m107-1 (-37.60)   [mcmv-miR-m107-1-5p:5-26] [mcmv-miR-m107-1-3p:43-64]

   c          U U    U     ucc  a 
cga CGGUCACUCG C CGAG CACCg   gu g
||| |||||||||| | |||| |||||   ||  
gCU GCCAGUGAGC G GCUC GUggc   ca c
   C          U C    -     --u  g 

>mcmv-mir-m108-1 (-45.30)   [mcmv-miR-m108-1*:4-25] [mcmv-miR-m108-1:82-103]

--  uU       A    C C      -ug  uc     ccucgu     a     a 
  cg  CACGAGC ACCG C GAAAUG   gg  uuccg      uacgc cgugu a
  ||  ||||||| |||| | ||||||   ||  |||||      ||||| |||||  
  GC  GUGCUCG UGGC G CUUUgc   cc  gaggc      augcg gcaua g
ga  -U       G    A U      uug  uc     ------     -     u 

>mcmv-mir-m108-2 (-46.40)   [mcmv-miR-m108-2-5p.2:3-23] [mcmv-miR-m108-2-5p.1:16-38] [mcmv-miR-m108-2-3p:53-75]

  U A      GC  G          A G    -     ag     
ga C CUCGUC  GA CGGUCACUCG C CGAG CACCG  ucgc 
|| | ||||||  || |||||||||| | |||| |||||  ||| u
cu g gagcag  cU GCCAGUGAGC G GCUC GUGgc  ggca 
  - c      --  G          A A    A     -a     

>xtr-mir-31b (-15.70)   [xtr-miR-31b:11-29]

-----guaacca      -A     -CU   A  C   uu 
            cuaGGC  AGAUG   GGC AG Uaa  a
            ||||||  |||||   ||| || |||  c
            gaucug  ucuac   ucg uc auu  c
gguuauuacgac      ac     cuu   g  c   uu 

>xtr-mir-146b (-37.57)   [xtr-miR-146b:21-42]

ccaa     gg   c    cU   A       U CA       uuccacuc 
    uggca  gcc ggcu  GAG ACUGAAU C  UGGACUg        a
    |||||  ||| ||||  ||| ||||||| |  |||||||         
    accgu  cgg cuga  cuc ugacuug g  accugac        c
-auc     --   u    -c   g       u ac       ucccacga 

>xtr-mir-320 (-31.70)   [xtr-miR-320:71-91]

-------uucccc   g   a    -     ---  aa          ------------       c  gc 
             ccu cua gcaa uuaug   cc  ucaacuuagu            gcaauca ac  u
             ||| ||| |||| |||||   ||  ||||||||||            ||||||| ||   
             gga ggu cguu aguac   GG  AGUUGGGUCG            uguuagu ug  a
gucauugaaauau   -   -    u     AGU  AG          AAAAggaaauaa       -  ac 

>xtr-mir-375 (-28.00)   [xtr-miR-375:41-62]

--    ----    c     u    u    u  u     
  ccug    acgc gagcc gacg gcaa gc uugu 
  ||||    |||| ||||| |||| |||| || ||| g
  ggac    UGCG CUCGG UUGC UGUU ug aacu 
gu    gaAU    -     C    U    U  c     

>xtr-mir-427-1 (-24.80)   [xtr-miR-427:44-66]

--   a          --   u  c   ug -   u 
  agc cccaaaacgg  ggc cu ucu  u gua g
  ||| ||||||||||  ||| || |||  | ||| a
  uuG GGGUUUUGUC  UCG GA AGa  g uau a
ug   C          UU   U  A   gu g   u 

>xtr-mir-427-2 (-24.80)   [xtr-miR-427:44-66]

--   a          --   u  c   ug -   u 
  agc cccaaaacgg  ggc cu ucu  u gua g
  ||| ||||||||||  ||| || |||  | ||| a
  uuG GGGUUUUGUC  UCG GA AGa  g uau a
ug   C          UU   U  A   gu g   u 

>xtr-mir-427-3 (-26.40)   [xtr-miR-427:44-66]

--   a          --   u  c   ug g      
  agc cccaaaacgg  ggc cu ucu  u cauga 
  ||| ||||||||||  ||| || |||  | |||| a
  uuG GGGUUUUGUC  UCG GA AGa  g guauu 
ug   C          UU   U  A   gu -      

>hsa-mir-1178 (-37.80)   [hsa-miR-1178:56-76]

      g      gagga       gg cca    c g     ca 
gcguug cuggca     agggaag  u   gggu a cugag  u
|||||| ||||||     |||||||  |   |||| | |||||   
uguagu gacugu     UCCCUUC  G   CUCG U gacuc  g
      g      -aaGA       UU UCA    U g     cc 

>hsa-mir-1179 (-33.60)   [hsa-miR-1179:15-35]

      -----      a   --         C        Gu ugua 
ggcugg     aaagga gAA  GCAUUCUUU AUUGGUUG  g    u
||||||     |||||| |||  ||||||||| ||||||||  |     
ucgauc     uuuccu uuu  cguaggaga uaaccaac  u    u
      agucu      a   ac         a        ug uccg 

>hsa-mir-1180 (-39.00)   [hsa-miR-1180:41-62]

        ---      c  -          gu  u 
gcugcugg   acccac cg gccgggaaua  gc c
||||||||   |||||| || ||||||||||  || c
cggcggcU   UGGGUG GC CGGCCUUUgu  ug u
        GUG      C  U          --  g 

>hsa-mir-1181 (-41.10)   [hsa-miR-1181:14-34]

u    -     ----        --   ---  CA   G    Gg 
 ccac ugcug    ccgCCGUC  GCC   GC  CCC AGCC  a
 |||| |||||    ||||||||  |||   ||  ||| ||||   
 ggug gcgac    ggugguag  cgg   cg  ggg ucgg  g
g    u     auca        aa   aac  cc   -    gc 

>hsa-mir-1182 (-37.90)   [hsa-miR-1182:62-84]

   a   g   cu  cu   u c      u    cagc    gga       g 
ggg cuu uca  gc  guc c ucccuc ccag    gacu   uucugga u
||| ||| |||  ||  ||| | |||||| ||||    ||||   ||||||| c
ccc gaa ggu  ug  CAG G AGGGAG GGUU    CUGG   GAGaucu c
   -   g   --  -u   U U      -    ----    ---       a 

>hsa-mir-1183 (-21.70)   [hsa-miR-1183:48-74]

au     aaa     g a -a   agaa     ga aag    ga 
  uauuc   ugcuc g g  cac    cauua  g   acag  g
  |||||   ||||| | |  |||    |||||  |   ||||  u
  gugag   acgag u C  GUG    GUGGU  U   UGUC  u
cc     --g     g A GG   -AGA     AG GGA    AC 

>hsa-mir-1184-1 (-29.50)   [hsa-miR-1184:61-83]

  ug a   c    ugaa      g   ---c    ca    ucaaca    cca 
cu  c gaa gagg    ggaggu guu    ugcu  gcag      gugg   c
||  | ||| ||||    |||||| |||    ||||  ||||      ||||    
gg  g cuu uucc    CCUUCG UAG    GCGA  CGUC      Cacc   a
  gu -   -    ugug      G   UUCA    --    ------    ucu 

>mmu-mir-466l (-30.90)   [mmu-miR-466l:60-81]

----   u uau    ---au      u      uacauguacauguauauauauauugauaua 
    cua g   gugc     gugugu ugugug                              c
    ||| |   ||||     |||||| ||||||                               
    gau c   cacg     uacaca gcacac                              a
ccua   u --u    guaau      c      guacguacUUAUACACACGUACAUAAAUAU 

>mmu-mir-669k (-38.80)   [mmu-miR-669k:65-85]

-----------------ucuuau   -ca  -aaa     ----            aguugu           cuuc 
                       gcc   cc    aaugu    gcauguguguau      gugcauauuca    u
                       |||   ||    |||||    ||||||||||||      |||||||||||     
                       cgg   gg    uuaca    CGUACGCACAUA      UACGUAUaagu    c
gaggauugacucuauaucgagac   uaa  auac     caAA            ------           auau 

>mmu-mir-669g (-29.50)   [mmu-miR-669g:21-43]

----------------------------------------ca        uacu    u      ---   A      GAC   A 
                                          ugugugcu    ugua gUGCAU   UGU UGUGUU   AUG U
                                          ||||||||    |||| ||||||   ||| ||||||   ||| a
                                          acacacga    acgu uaugug   aca auacaa   uac u
uauaguaaguuugcauauuuacuuacguuaaaaaggacacac        ----    c      cac   a      ---   a 

>mmu-mir-669d (-49.71)   [mmu-miR-669d:42-63]

cagcccgggauu       -   u   ucuauau         CU  U     C              au 
            ugugugu ugc ugc       guguguauA  UG GUGUG AUGUAUAUGUgugu  a
            ||||||| ||| |||       |||||||||  || ||||| ||||||||||||||   
            acacacg acg acg       cacacauau  ac cacac uacauauacauaua  u
-----------c       u   u   -------         --  c     a              ag 

>mmu-mir-466i (-53.40)   [mmu-miR-466i:80-101]

agagaucaugucagugaacugccacauuuuuga       ua           -                     u 
                                 uauauau  uguauguaugu gugugugugugugugugugua a
                                 |||||||  ||||||||||| |||||||||||||||||||||  
                                 auauaua  acguauguacA CACACAUACACACACACAUAu u
--------------------------------c       ca           U                     a 

>mmu-mir-1-2-as (-35.20)   [mmu-miR-1-2-as:41-61]

uuccuuuagcuucuucuug    acauua     c  a a              -CAU      -gc  u 
                   gcgg      ccuac ca a UACAUACUUCUUUA    UCCAua   ac g
                   ||||      ||||| || | ||||||||||||||    ||||||   || a
                   cguc      ggaug gu u guguaugaagaaau    ggguau   ug a
------------------g    -cucac     a  c c              acau      acu  u 

>mmu-mir-1186 (-28.30)   [mmu-miR-1186:21-42]

-----------------------------uccaccug    u  -   cc     CU      --AAA    -  ca 
                                     ucuc gc cuc  GAGUG  GGAAUU     GGCA UG  c
                                     |||| || |||  |||||  ||||||     |||| ||   
                                     agag ug gag  uuuau  ucuugg     ccgu ac  c
ggaaaccugagugguacuucugaaaagggguauauaa    -  u   uc     ug      acggc    c  ca 

>mmu-mir-1187 (-40.07)   [mmu-miR-1187:80-102]

ucauauaguauuaaaccga        ccuuaua    caauuuauu          c               u 
                   acuguuuu       gaca         uuuacacaca acacacacacauaua a
                   ||||||||       ||||         |||||||||| |||||||||||||||  
                   ugauaaaa       uugu         aAAUGUGUGU UGUGUGUGUGUAUau u
------------------a        -------    ---aacaau          A               a 

>mmu-mir-669j (-31.80)   [mmu-miR-669j:80-101]

agcaugcgauucaugugauguccacca  a    --       u     guu    a     u  c 
                           ag augu  gcaugug guaua   gugu cauau ca u
                           || ||||  ||||||| |||||   |||| ||||| ||  
                           uc uACA  CGUACAC CAUAU   Uaua guaua gu u
-----------agcccgguaagcaccc  a    AA       U     ACG    a     u  u 

>mmu-mir-669f (-31.79)   [mmu-miR-669f:57-79]

--uguau     uguguguauag         ca     a     guauaugaauauaCAUAU 
       gugcc           uugugugug  ugugc ugugu                  A
       |||||           |||||||||  ||||| |||||                   
       cacgg           gacacacac  acacg acgca                  C
aguugcu     -----uaagga         aa     a     aaUAUGCACACACACAUA 

>mmu-mir-669i (-37.60)   [mmu-miR-669i:68-88]

---------------------augugaugcccaccaauaa               aguugu       u    uuc 
                                        ugugcauguguguau      gugcaua ucau   u
                                        |||||||||||||||      ||||||| ||||    
                                        AUACGUACACACAUA      UACGUau agua   c
aguuuuccuauauacugacaguaaggacauacacucaaaC               ------       c    uau 

>mmu-mir-669h (-32.99)   [mmu-miR-669h-5p:20-43] [mmu-miR-669h-3p:65-86]

-----------------------     ugcccaccaaaaauA      G      AGUUGA            uuc 
                       uguga               UGCAUG GUGUAU      GUGCauauucau   u
                       |||||               |||||| ||||||      ||||||||||||    
                       acacu               ACGUAC CACAUA      UACGUAUaagua   c
cuauuugcucacaguaaggacac     --cacacacacacAC      A      ------            uau 

>mmu-mir-1188 (-44.20)   [mmu-miR-1188:20-40]

---------------------auacucac     - -c    -U      AG UU     -A   u  aa c 
                             agucu c  cagc  GGUGUG  G  GGGCC  GGA ga  c c
                             ||||| |  ||||  ||||||  |  |||||  ||| ||  |  
                             ucaga g  gucg  ccacac  c  cucgg  ccu cu  g a
gguguggugagccgugucggaacgauccg     a uc    uc      ca cc     ag   -  cg a 

>mmu-mir-466f-4 (-35.00)   [mmu-miR-466f:20-41]

-------   cu    cugu   uc   ----     U       UG        ug   -  gu 
       cau  gcau    gug  uAC    GUGUG GUGCAUG  CAUGUgug  uau cu  a
       |||  ||||    |||  |||    ||||| |||||||  ||||||||  ||| ||  u
       gua  ugug    cau  gug    uauau uacgugu  guacguac  gug ga  g
uauacgu   ag    uguu   cu   uguc     c       gu        gu   u  gu 

>mmu-mir-466k (-45.20)   [mmu-miR-466k:20-42]

auau   ug  ug      UG              --      Ag    ug           u 
    aug  ug  ugugug  UGUGUGUACAUGUA  CAUGUG  uaug  uguguauaugu u
    |||  ||  ||||||  ||||||||||||||  ||||||  ||||  |||||||||||  
    ugu  ac  guacgu  guauauguguauau  guguau  gugu  guacguguaca g
----   gu  gu      gu              aa      ga    gu           u 

>mmu-mir-467f (-54.30)   [mmu-miR-467f:81-101]

acggcuacauagagaaauccuguacccagaaaucgaacgggggugggug                          u 
                                                 uguguguagguguguguguguguaug a
                                                 ||||||||||||||||||||||||||  
                                                 acacACAUCCACACACACACAUAUAu u
----------------------------------uuuaagguuuuuucg                          g 

>mmu-mir-1190 (-49.80)   [mmu-miR-1190:81-102]

gcugacacucugagaguguugguga    u     --cu  g      u   aa gu   u      --cu  u 
                         gcuc ggggc    uu cagacg ggg  g  cuc gcuggc    ga g
                         |||| |||||    || |||||| |||  |  ||| ||||||    ||  
                         ugag uuccg    ag guCUGU UCC  U  GAG CGACUg    cu c
------------------------c    -     ucgu  g      C   CC UG   U      cccc  u 

>mmu-mir-466j (-51.20)   [mmu-miR-466j:80-102]

     ug           ucgugugu   ug      ug      ug     u      ug g 
gugug  ugugugugcau        uug  caugug  uaugug  cacau uaugug  u c
|||||  |||||||||||        |||  ||||||  ||||||  ||||| ||||||  |  
cauac  guauauaugug        AAU  GUGUAC  GUACGU  GUgug auguau  g a
     gu           ------uu   GU      GU      GU     u      gu u 

>mmu-mir-1191 (-47.16)   [mmu-miR-1191:80-100]

uggaaccagccuggucuac    caaca    a    g c                 ac    cucaaa 
                   auag     ucua gcca c agggcuacauagugaga  cugc      a
                   ||||     |||| |||| | |||||||||||||||||  ||||      g
                   uauc     agau cggu g UCCCGAUGUAUCAUUCU  GACg      c
-------------------    ccuca    c    a A                 --    acaaaa 

>mmu-mir-1192 (-31.90)   [mmu-miR-1192:20-41]

----------------------   -  -    -  g     a            C   C      -ugu  u 
                      ccu uc caaa ca uaaaa cAAACAAACAAA AGA CAAAUU    ca u
                      ||| || |||| || ||||| |||||||||||| ||| ||||||    ||  
                      gga ag guuu gu guuuu guuuguuuguuu ucu guuuag    gu g
cguacucgauauguucggucug   c  a    u  -     c            u   c      cuuu  u 

>mmu-mir-1193 (-45.30)   [mmu-miR-1193:80-100]

cugaagggacaaugaugcccac  u   cg    a c  u            - c      g    - uuc 
                      ug ucu  gggu g ug guggaugguaga c ggugac uaca c   a
                      || |||  |||| | || |||||||||||| | |||||| |||| |   u
                      ac aga  ccca c ac cacCUAUCAUUU G CCACUG AUgu g   u
------------------gucu  c   --    - a  -            U C      G    c uau 

>mmu-mir-1194 (-41.40)   [mmu-miR-1194:80-101]

acaccuucugcuggagacaauauaaggacau      --a     g      uc      c  ug c   u 
                               uggaag   aggga ucuagc  uugcuc uu  c ugc u
                               ||||||   ||||| ||||||  |||||| ||  | ||| g
                               accuuc   uUCCU AGAUCG  AAUGAG AA  g gcg c
---------------------gucgacacuu      agg     -      UC      U  Ga u   u 

>mmu-mir-669e (-40.04)   [mmu-miR-669e:43-64]

gccugggauucaugggcuguacccuauauaugggcag        -CUU       CA   UCAUuu        gaa 
                                     gugugUGU    GUGUGUG  UGU      guguauau   u
                                     ||||||||    |||||||  |||      ||||||||    
                                     cacacacg    cacacau  aca      cacauaua   a
--------------------------------acaca        uacu       uc   ------        agu 

>mmu-mir-467g (-51.20)   [mmu-miR-467g:81-101]

gucu    c      au                    a                 acaua 
    ugug augcau  auauauauguguguguguau uauauauacauauauau     c
    |||| ||||||  |||||||||||||||||||| |||||||||||||||||      
    auau uaugua  uauaUAUAUACACACACAUA AUAUauauguauaugua     a
--au    a      cu                    C                 cacau 

>mmu-mir-467h (-34.00)   [mmu-miR-467h:80-101]

uuuucacuuuuguuuuucucauguauaugug      ug g ug      au     c      ug   g    u 
                               uaugug  c g  uacaua  uauau uaugug  cau uaug g
                               ||||||  | |  ||||||  ||||| ||||||  ||| ||||  
                               auacau  g u  gugugU  GUAUA GUACGU  GUG AUAc g
-----------------------------ua      gu g gu      --     U      GU   A    a 

>mmu-mir-1195 (-46.80)   [mmu-miR-1195:21-43]

-----------------------------ua        caga        A    GA   CA    ----     ac 
                               gaggcagg    ucucugUG GUUC  GGC  GCCU    GCUCA  a
                               ||||||||    |||||||| ||||  |||  ||||    |||||   
                               cucugucc    agagacac caag  ccg  cggg    ugagu  g
aaaaaaaaaaaaaaaaugaaaaauggaagaa        -caa        a    ga   -a    aucu     aa 

>mmu-mir-1196 (-30.20)   [mmu-miR-1196:21-40]

ugcugguc     cucac     U      --      -    uc    --uacu   cag  ug 
        uugaa     agAAA CUACCU  GCCUCU GCCU  caag      ggg   ug  c
        |||||     ||||| ||||||  |||||| ||||  ||||      |||   ||   
        aauuu     uuuuu gguggg  uggggg cggg  guuu      ccc   ac  c
-------a     -uuuu     u      ag      u    uc    uuacau   aaa  ca 

>mmu-mir-1197 (-37.20)   [mmu-miR-1197:80-100]

gugagcuggaaucagccagcguuaccucaa      -u     ugc   u       gug g    - uuu 
                              gguauu  gaaga   ggu gaccaug   u uacg c   a
                              ||||||  |||||   ||| |||||||   | |||| |   u
                              cuauaa  cuUCU   UCA CUGGUAC   G AUgc g   u
--------------------ccgcucuaca      cu     ---   U       ACA G    a uau 

>mmu-mir-1198 (-45.70)   [mmu-miR-1198:42-63]

uuuuuuuucuuuuguuuauuuugu   u     -u  u        U   CCU           --   uc 
                        uug gacag  ug cuguUAUG GUU   GGCUGGCUUGG  uac  a
                        ||| |||||  || |||||||| |||   |||||||||||  |||   
                        gac cuguc  ac gacgguac caa   ccgaucgaacc  aug  u
--------------------cucu   u     cu  u        u   ucu           cg   ug 

>mmu-mir-1199 (-72.50)   [mmu-miR-1199:21-40]

----------------agccu cg           -- U     UC           G   agga      
                     g  ccggagccggg  g CUGAG  CCGGUCGCGCG gcg    acuca 
                     |  |||||||||||  | |||||  ||||||||||| |||    |||| u
                     c  ggccucggccc  c gacuc  ggccggcgugc cgu    ugagu 
aggucccgcgcgccgucgccu au           gg u     gu           g   ----      

>cpa-MIR162a (-43.30)   [cpa-miR162a:80-100]

a      agu a     g    c    c       ucuuccugggaauuuggugu 
 ggguaa   c cugga gcag gguu aucgauc                    g
 ||||||   | ||||| |||| |||| |||||||                     
 cccauu   g GACCU CGUC CCAA UAGCUag                    a
c      --- c     A    U    A       cuaaguacaagacacuaaaa 

>ptr-mir-1224 (-45.00)   [ptr-miR-1224-5p:1-24] [ptr-miR-1224-3p:65-85]

G      CUC         A   U  u  cgccggggccgg 
 UGAGGA   GGGAGGUGG GGG gg gc            g
 ||||||   ||||||||| ||| || ||            c
 ACUCCU   UCCUCCACC Ccc cu cg            g
G      CUC         C   u  u  cucgacuuuguc 

>mml-mir-1224 (-44.90)   [mml-miR-1224:1-19] [mml-miR-1224*:65-85]

G      CUC         a   uggcgccgccggggccagg 
 UGAGGA   GGGAGGUGG ggg                   c
 ||||||   ||||||||| |||                    
 ACUCCU   UCCUCCACC CCc                   g
G      CUC         -   cucuucgcucgaaucuguc 

>hsa-mir-1225 (-48.20)   [hsa-miR-1225-5p:1-22] [hsa-miR-1225-3p:69-90]

G    UA    C   U   ---  Gg  -ag  aca            
 UGGG  CGGC CAG GGG   GG  ag   gg   cgcccugggcu 
 ||||  |||| ||| |||   ||  ||   ||   |||||||||| c
 ACCC  GCCG GUC CCC   Uc  uc   cc   gugggacccgu 
G    CC    U   -   GAG  ag  agg  gac            

>mml-mir-1225 (-48.20)   [mml-miR-1225-5p:1-21] [mml-miR-1225-3p:68-90]

G    UA    C   U   ---  gg  -ag  aca            
 UGGG  CGGC CAG GGG   GG  ag   gg   cgcccugggcu 
 ||||  |||| ||| |||   ||  ||   ||   |||||||||| c
 ACCC  GCCG GUC CCC   UC  uc   cc   gugggacccgu 
G    CC    U   -   GAG  ag  agg  gac            

>hsa-mir-1226 (-36.90)   [hsa-miR-1226*:1-26] [hsa-miR-1226:54-75]

GUG    C       C    A      a   ----g  a 
   AGGG AUGCAGG CUGG UGGGGc gcu     gg u
   |||| ||||||| |||| |||||| |||     || g
   UCCC UGUGUCC GACC ACUccg ugg     cc g
-GA    U       C    -      g   gaaaa  u 

>ptr-mir-1226 (-36.90)   [ptr-miR-1226:54-75]

gug    c       c    a      a   ----g  a 
   aggg augcagg cugg uggggc gcu     gg u
   |||| ||||||| |||| |||||| |||     || g
   UCCC UGUGUCC GACC ACUccg ugg     cc g
-GA    U       C    -      g   gaaaa  u 

>mml-mir-1226 (-36.90)   [mml-miR-1226:54-75]

gug    c       c    a      a   ----g  a 
   aggg augcagg cugg uggggc gcu     gg u
   |||| ||||||| |||| |||||| |||     || g
   UCCC UGUGUCC GACC ACUccg ugg     cc g
-GA    U       C    -      g   gaaaa  u 

>hsa-mir-1227 (-40.60)   [hsa-miR-1227:69-88]

guggggccaggcgguggugggcacugcug      g   agcagccaugcaga 
                             gggugg cac              g
                             |||||| |||               
                             CCCACC GUG              c
-------------------GACCCCUUUU      -   Ccccaguuuacggg 

>mml-mir-1227 (-42.00)   [mml-miR-1227:1-20]

GUGGGGCCAGGCGGUGGUGGgcaccgcu    ug     ------   a   a     
                            gggg  ggcac      agc gcc ugca 
                            ||||  |||||      ||| ||| ||| g
                            cucc  ccgug      ucg cgg acga 
--------------------gaccccuu    ua     ccccag   a   -     

>hsa-mir-1228 (-46.00)   [hsa-miR-1228*:1-21] [hsa-miR-1228:52-71]

---GU        G        UGgu    ggugg     g 
     GGGCGGGG CAGGUGUG    gggu     ccugc g
     |||||||| ||||||||    ||||     ||||| u
     CCCGCUCC GUCCACAC    cccg     ggacg g
gaCCC        -        ---U    -----     a 

>hsa-mir-1229 (-36.00)   [hsa-miR-1229:47-69]

--     u     -u   gg     c   -gg   g 
  guggg agggu  ugg  gagag gug   cug g
  ||||| |||||  |||  ||||| |||   ||| g
  CACCC UCCCG  ACC  CUCUC cac   gac u
GA     -     UC   -A     c   agg   u 

>mml-mir-1230 (-38.40)   [mml-miR-1230:1-20]

G    -U      AU       ----ga g    g gu 
 UGGG  GGGGGC  CUCGGAg      g uggg g  g
 ||||  ||||||  |||||||      | |||| |   
 accc  uccucg  gagccuc      c accc c  u
g    uu      gc       aguagg g    g gg 

>hsa-mir-1231 (-33.50)   [hsa-miR-1231:5-24]

gucaGUGU   -   --      CU     aa    ---a    ---ca    u 
        CUG GGC  GGACAG  GCagg  aggg    agac     aggc u
        ||| |||  ||||||  |||||  ||||    ||||     |||| g
        gac ccg  cuuguc  ugucc  uccc    ucug     ucug c
--------   a   uu      --     ca    accg    accug    u 

>mml-mir-1232 (-43.40)   [mml-miR-1232:53-73]

--         -   c acauggcgggggcggcgggc 
  guggggugg cgg g                    c
  ||||||||| ||| |                     
  CGCCCCACC GCC C                    c
GA         A   C AGUCcgcgugucggaggcgu 

>hsa-mir-1233-1 (-46.50)   [hsa-miR-1233:63-82]

guga        c      acgg    ggga    ca     aug 
    gugggagg cagggc    cagg    gcug  gggcu   g
    |||||||| ||||||    ||||    ||||  |||||    
    CGCCCUCC GUCCCG    GUcu    cgac  cccgg   g
--GA        U      ---A    ---g    --     gga 

>hsa-mir-1234 (-50.10)   [hsa-miR-1234:61-82]

gugag          c   gg   --  gg   g     g   a 
     uguggggugg ugg  ggg  gg  ggg gggcc ggg c
     |||||||||| |||  |||  ||  ||| ||||| |||  
     aCACCCCACC ACC  UCC  CU  ucc uccgg uuc g
----g          C   AG   GG  ga   g     g   g 

>mml-mir-1235 (-42.50)   [mml-miR-1235:54-74]

g    ccug  u     g  ac        u  g   g 
 uggg    gg cggug gg  ggggcggc gg cgu c
 ||||    || ||||| ||  |||||||| || ||| c
 ACCC    CC GCCAC CC  UCUcgucg cc gcg c
G    ----  U     G  AA        -  g   u 

>hsa-mir-1236 (-38.30)   [hsa-miR-1236:81-102]

-- u   u    -      au    auggacuggaagugggcagcauggagcu 
  g gag gaca ggggaa  gggg                            g
  | ||| |||| ||||||  ||||                             
  C CUC CUGU CCCCUU  CUCC                            a
GA -   U    U      --    guaauacaaccgguucgguacuacuucc 

>hsa-mir-1237 (-58.30)   [hsa-miR-1237:82-102]

g    a    cca  c     c      g g   g  aga     ---      g 
 uggg gggc   gg gcggg aggggu g ggu gc   gcgcu   gucccg g
 |||| ||||   || ||||| |||||| | ||| ||   |||||   ||||||  
 ACCC CCUG   CC CGUCU UCCUca u cca cg   cgcga   cggggc g
G    -    ---  U     -      a g   g  --g     agc      g 

>hsa-mir-1238 (-30.90)   [hsa-miR-1238:62-81]

gugag    a  -cc   -  ugu  uug    -  -u   -    g 
     uggg gc   cag ug   gg   gggc ca  ggc gggu g
     |||| ||   ||| ||   ||   |||| ||  ||| |||| g
     aCCC CG   GUC GC   CC   UCcg gu  ccg cccg c
----g    -  UCU   U  --U  --U    a  cu   a    a 

>mml-mir-1239 (-54.30)   [mml-miR-1239:84-105]

g     -       ugg u       cc      g u      ucucu       c 
 ugggu gggcagg   g gggaagc  ugggac c gccucc     ccugggg c
 ||||| |||||||   | |||||||  |||||| | ||||||     |||||||  
 AUCCG UCCGUCU   C CCCUUug  acucug g cggggg     gggcucu u
G     G       -UA -       --      - u      ---uc       c 

>mml-mir-1240 (-31.40)   [mml-miR-1240:60-81]

---     -c     c  c  gg    -gc    --ca     c 
   guggg  caggg cg gg  ggga   aagc    ucuag a
   |||||  ||||| || ||  ||||   ||||    ||||| u
   CACCC  GUCCC GU CC  CUcu   uucg    ggguc u
gaU     UA     A  A  -A    aca    caaa     c 

>mml-mir-1241 (-35.00)   [mml-miR-1241:63-84]

gugaggg  cu       c    aggcgccagagaagccauag 
       gg  ggcaugg gagg                    u
       ||  ||||||| ||||                    g
       CC  CCGUGUC CUCC                    u
-----GA  UU       U    ACUCacacgucggguagggg 

>hsa-mir-1200 (-26.40)   [hsa-miR-1200:9-30]

u    cu  U     -GCCA         UC    a   g 
 gcua  uC CCUGA     UUCUGAGCC  aauc cuu c
 ||||  || |||||     |||||||||  |||| |||  
 cgau  ag ggacu     aggacuugg  uuag gag c
c    --  -     guuua         --    a   a 

>hsa-mir-1201 (-19.21)   [hsa-miR-1201:52-75]

uuuac       -  u  ugaaau      uaagucc  -guu    -  g 
     aguuugc ca ga      gcaugu       gu    ucag cu a
     ||||||| || ||      ||||||       ||    |||| ||  
     ucagacg GU CU      CGUACA       CA    AGUC GA u
--aaa       A  -  ------      -------  AAUU    C  c 

>hsa-mir-1202 (-35.30)   [hsa-miR-1202:13-33]

    cug aga  UG  A    - --  UG   GA    cu  c 
ccug   c   gG  CC GCUG C  AG  GGG  Ggca  gc a
||||   |   ||  || |||| |  ||  |||  ||||  ||  
ggac   g   cc  gg cgac g  uc  cuc  ccgu  cg g
    -aa -aa  gu  a    c au  gu   ac    --  g 

>hsa-mir-1203 (-35.20)   [hsa-miR-1203:6-26]

u   c -    A    G   GCAG  Ca      a c      u 
 ccu C CCGG GCCA GAU    CU  agccac g agggug u
 ||| | |||| |||| |||    ||  |||||| | |||||| u
 gga g gguc cggu uua    ga  ucggug c ucucgc a
-   c u    g    g   ----  cc      a u      g 

>hsa-mir-663b (-48.10)   [hsa-miR-663b:90-111]

ggu   ga    -  u    - auc     cg  --uc  ug   uacc    u  u  c 
   gcc  gggc cg ccgg c   cuagg  gg    gc  cgg    uccc cc gu u
   |||  |||| || |||| |   |||||  ||    ||  |||    |||| || || g
   uGG  UCCG GC GGCC G   GGucc  uu    cg  gcc    aggg gg cg u
cuu   AG    U  C    C -GU     uu  gugc  gu   --cu    u  -  g 

>hsa-mir-1204 (-26.80)   [hsa-miR-1204:4-24]

   U  U   CUG   UC    A  ug     a 
acc CG GGC   GUC  CAUU Uu  agaug g
||| || |||   |||  |||| ||  ||||| u
ugg gc ccg   cag  gugg ag  ucuac u
   u  u   -ug   ga    -  gu     a 

>hsa-mir-1205 (-23.90)   [hsa-miR-1205:8-27]

ga    cU --U        U  UUU    u 
  aggc  C   GCAGGGUU GC   GAGg a
  ||||  |   |||||||| ||   |||| c
  ucug  g   ugucccaa ug   uucc u
ug    ag ucu        c  ucc    u 

>hsa-mir-1206 (-19.40)   [hsa-miR-1206:4-24]

          G   -A   UU    u  ug 
cagUGUUCAU UAG  UGU  AAGC cu  c
|||||||||| |||  |||  |||| ||   
gucgcaagug auc  acg  uuug ga  a
          -   ga   uu    -  ug 

>hsa-mir-1207 (-36.50)   [hsa-miR-1207-5p:8-28] [hsa-miR-1207-3p:52-69]

     ---    -GCA      C  GGA     ug     -    gg 
gcagg   gcUG    GGGAGG UG   GGGGc  gcugg gucu  u
|||||   ||||    |||||| ||   |||||  ||||| ||||   
ugucu   cgac    uuCUUU AC   UCCCG  CGACU cggg  a
     uca    agaa      -  ---     GU     a    ug 

>hsa-mir-1208 (-25.60)   [hsa-miR-1208:12-31]

-     g   -aaUC   GU     CA    -    cg 
 caccg cag     ACU  UCAGA  GGCG GAga  g
 ||||| |||     |||  |||||  |||| ||||   
 guggu guc     uga  agucu  ccgc cuuu  g
g     -   accac   gu     -c    u    cu 

>rno-mir-146b (-37.00)   [rno-miR-146b:15-38]

    -  -  u   -  UG        A    A    ----    gaa 
uggc ca cc ggc cc  AGAACUGA UUCC UAGG    CUGU   c
|||| || || ||| ||  |||||||| |||| ||||    ||||    
aucg gu gg ccg gg  ucuugacu aggg aucc    gacg   u
    u  c  u   u  --        c    -    cgua    auc 

>rno-mir-551b (-43.40)   [rno-miR-551b:56-78]

--- u  ---     ug   ca          cu     - -aga    gua 
   g gc   ucuug  gcc  ugaaaucaag  ugggu g    ccug   c
   | ||   |||||  |||  ||||||||||  ||||| |    ||||    
   c cg   agaac  cgg  ACUUUGGUUC  ACCCA C    ggac   a
uau u  gua     gu   UG          AU     G GGaa    aag 

>hsa-mir-548e (-39.30)   [hsa-miR-548e:53-74]

--             a      caa  g           a   c 
  uuauuagguuggu caaaag   uc cgguuuuugcu uua u
  ||||||||||||| ||||||   || ||||||||||| |||  
  gauaguccaaccA GUUUUC   AG GUCAAAAAcgg aau u
aa             C      AUC  A           a   u 

>hsa-mir-548j (-53.70)   [hsa-miR-548j:29-50]

--    agc     -aa    ua                 U     C    G    ac 
  gggc   cagug   uagu  gcuggugcAAAAGUAAU GCGGU UUUG Uauu  u
  ||||   |||||   ||||  ||||||||||||||||| ||||| |||| ||||   
  cuug   gucgc   auca  cgaccacguuuucauua cguca aaac guga  u
ga    --a     aag    uc                 -     a    g    cu 

>hsa-mir-1285-1 (-58.20)   [hsa-miR-1285:51-72]

--            a                    ug ucuc 
  uguagagauagg ucucacuuuguugcccaggc  g    a
  |||||||||||| ||||||||||||||||||||  |     
  acaucucuauUC AGAGUGAAACAACGGGUCUg  c    a
ga            C                    gu cuca 

>hsa-mir-1285-2 (-31.70)   [hsa-miR-1285:52-73]

--    -      c    cuggugca      --ga      caau   a 
  uuug ggaggc gagg        ucacuu    gcccag    uug g
  |||| |||||| ||||        ||||||    ||||||    |||  
  aaac ucucug cUCC        AGUGAA    CGGGUC    aac a
ag    a      c    ------AG      ACAA      ---U   c 

>hsa-mir-1286 (-32.30)   [hsa-miR-1286:47-67]

--ug   u ug   a    g    c   g  u     au 
    ucc c  ggg cuca cuug ucu gc gcugg  u
    ||| |  ||| |||| |||| ||| || |||||   
    agg g  UCC GAGU GAAC AGG CG cgauu  g
acag   u gu   C    A    C   A  U     aa 

>hsa-mir-1287 (-33.50)   [hsa-miR-1287:16-37]

--  ug  cug     gU    G   A      C    Cu a  cuu 
  gu  ug   uccag  GCUG AUC GUGGUU GAGU  g gc   u
  ||  ||   |||||  |||| ||| |||||| ||||  | ||    
  ca  ac   agguu  ugac uag caccga cuca  c cg   a
aa  gu  -cg     ag    g   a      u    -- -  aaa 

>hsa-mir-1289-1 (-55.89)   [hsa-miR-1289:86-108]

--         uuuagua       aaaacaaa   --ggu         c      u          ---ag  a 
  uucucaauu       ggaauua        acu     aaaugcaga ucuugg uuccaccccc     ag a
  |||||||||       |||||||        |||     ||||||||| |||||| ||||||||||     || u
  aaggguuaa       ucuuagu        uga     UUUACGUCU AGGACC GAGGUggggg     uc c
ac         ----uag       gggaccca   aagaU         A      U          ccaaa  c 

>hsa-mir-1289-2 (-34.40)   [hsa-miR-1289:70-92]

--ccac   cc   --u      g   c      a   c ug -     -a   a  g 
      ggu  uag   uaaaaa gca auuccu gac c  c cucag  acu cu a
      |||  |||   |||||| ||| |||||| ||| |  | |||||  ||| ||  
      ccg  auc   auUUUU CGU UAAGGA CUG G  g ggguc  uga ga a
ccgccc   cu   ccc      A   C      C   A GU u     ac   -  c 

>hsa-mir-1290 (-23.30)   [hsa-miR-1290:53-71]

--       a g    cac       gu      u      a 
  gagcguc c uuga   ucaaaaa  uucaga uuugga c
  ||||||| | ||||   |||||||  |||||| ||||||  
  cucguAG G GACU   GGUUUUU  AGGUuu aggcuu a
aa       - -    --A       --      u      u 

>hsa-mir-1291 (-38.70)   [hsa-miR-1291:14-37]

--  u   -au   -agU    -   A  GA           ug   
  gg aga   ucc    GGCC CUG CU  AGACCAGCAGU  ua 
  || |||   |||    |||| ||| ||  |||||||||||  | c
  cc ucu   agg    ccgg gac ga  uuugguugucg  gu 
gu  u   guc   aaau    a   -  ac           gu   

>hsa-mir-548k (-46.00)   [hsa-miR-548k:32-53]

cuuuucucaa      c           u         C      A       uuac 
          guauug uguuagguugg gcAAAAGUA UUGCGG UUUUGCU    u
          |||||| ||||||||||| ||||||||| |||||| |||||||    u
          cguagu auaauccaacu cguuuuuau aacgcc aaaacgg    u
ucgguuaaaa      -           u         u      a       uaau 

>hsa-mir-1293 (-44.00)   [hsa-miR-1293:10-31]

agguuguu                         cu 
        cUGGGUGGUCUGGAGAUUUGUGCag  u
        |||||||||||||||||||||||||  g
        gauucaccaggccucuaaacacguc  u
--auuucu                         ca 

>hsa-mir-1294 (-70.20)   [hsa-miR-1294:48-69]

--     aaugugug  aa     gu   u  a g       c                          C  g  u 
  caccu        cc  gaucu  uca uu u aucucac gaguccUGUGAGGUUGGCAUUGUUGU Ug ca u
  |||||        ||  |||||  ||| || | ||||||| |||||||||||||||||||||||||| || || g
  gugga        gg  uuagg  agu aa a uggagug cucaggacacuccaaccgugacaaca au gu u
au     -------a  -a     --   c  - g       a                          u  a  c 

>hsa-mir-1295 (-49.90)   [hsa-miR-1295:49-69]

--         ug        c        u   g aau 
  aggacauuu  cccagauc guggccua uca a   g
  |||||||||  |||||||| |||||||| ||| |   u
  uccuguaaA  GGGUCUAG CGCCGGAU agu u   g
cc         GU        A        U   g ccg 

>hsa-mir-1297 (-19.10)   [hsa-miR-1297:52-68]

uguuua  u   g g    uc    a         aucu 
      uc cua g uuga  uauu gaauuacuu    g
      || ||| | ||||  |||| |||||||||     
      ag gau U GACU  AUGA CUUaaugaa    a
---caa  u   G G    UA    A         accg 

>hsa-mir-1299 (-34.34)   [hsa-miR-1299:62-83]

--       g   u    ug    ---c       a  gacaau 
  ccucaug cag guuc  gaau    cuacgug gg      c
  ||||||| ||| ||||  ||||    ||||||| ||       
  GGAGUGU GUC UAAG  CUUg    gaugcac cc      a
AG       -   U    GU    ugac       -  agacuu 

>hsa-mir-548l (-41.60)   [hsa-miR-548l:15-36]

--uauua          A     U      G         aga 
       gguuggugcA AAGUA UUGCGG UUUUGUCgu   a
       |||||||||| ||||| |||||| |||||||||    
       ccaaccacgu uucau gacguc aaaacggua   a
ucguaaa          g     u      a         aug 

>hsa-mir-1302-1 (-44.60)   [hsa-miR-1302:75-95]

--   aaag  c     a            ag   a   u        gug  -      a  a     uac 
  cag    cc aguua auuugaauuuca  uaa caa gaauaauu   ua uguaag au uccca   a
  |||    || ||||| ||||||||||||  ||| ||| ||||||||   || |||||| || |||||   a
  guc    gg ucaau uaaacuuaaagu  auu guu cuuauuaa   AU GUAUUC UA AGGGU   u
au   cuua  a     g            cu   c   c        -AA  C      A  C     Uua 

>hsa-mir-1302-2 (-62.60)   [hsa-miR-1302:73-93]

ggaugccca   --ag                     g      --uucg        a              
         gcu    uuugaauuuuagauaaacaac aauaau      uagcauaa uaugucccaagcu 
         |||    ||||||||||||||||||||| ||||||      |||||||| |||||||||||| u
         cga    agacuuagagucuauuuguug uuauua      AUCGUAUU AUACAGGGUUuga 
---auuuua   auua                     g      caaaAA        C              

>hsa-mir-1302-3 (-56.50)   [hsa-miR-1302:73-93]

ggaugccca   --ag                     g      --uucg        a   u          
         gcu    uuugaauuuuagauaaacaac aauaau      uagcauaa uau ucccaagcu 
         |||    ||||||||||||||||||||| ||||||      |||||||| ||| |||||||| u
         cga    aaacuuagagucuauuuguug uuauua      AUCGUAUU AUA AGGGUUuga 
---auuuua   auua                     g      caaaAA        C   C          

>hsa-mir-1302-4 (-49.70)   [hsa-miR-1302:77-97]

--       -aa ca   cuaa                ---aa      uu -uc    a           u   ugc 
  aaugcag   g  cag    aauuugaauuucagau     acaaau  u   uuag auaaguauguc cca   a
  |||||||   |  |||    ||||||||||||||||     ||||||  |   |||| ||||||||||| |||   a
  uuauguc   c  guc    uuaaacuuaaagucua     uguuua  a   AAUC UAUUCAUACAG GGU   c
uu       cua ag   -aac                cuuug      uu uaA    G           -   Uua 

>hsa-mir-1302-5 (-38.70)   [hsa-miR-1302:77-97]

----ugcccg    cccauu       uu    ----a     auc    au      a           a     ugu 
          gccu      aaauugg  uuuc     gacaa   acaa  uuguuu gguauaaguau uccca   a
          ||||      |||||||  ||||     |||||   ||||  |||||| ||||||||||| |||||   a
          ugga      uuuaauu  aaag     uuguu   uguu  aauaAA UCGUAUUCAUA AGGGU   u
uuauguccug    -uuaau       uu    guuag     ccu    --      A           C     Uuc 

>hsa-mir-1302-6 (-20.90)   [hsa-miR-1302:56-76]

--        a   gg  a    u     g    cac      uag 
  aacaaaua uuu  ua uaua guaug ccca   aauauu   g
  |||||||| |||  || |||| ||||| ||||   ||||||   a
  uuguuuau aaa  AU GUAU CAUAC GGGU   Uuauaa   c
ag        g   AA  C    U     A    ---      caa 

>hsa-mir-1302-7 (-17.80)   [hsa-miR-1302:39-59]

ac     ----g       g cau        g ugc 
  aacau     uuuuuag a   guaugucu g   a
  |||||     ||||||| |   |||||||| |   a
  uugug     aaAAAUC U   CAUACAGG U   u
-c     auuaa       G AUU        G Uaa 

>hsa-mir-1302-8 (-44.50)   [hsa-miR-1302:66-86]

--        a   u        u  a       --       -c     u     a  a  ugc 
  cccauuua acu gaauuuca au aacaccg  uaauuuu  agcau agugu uc ca   a
  |||||||| ||| |||||||| || |||||||  |||||||  ||||| ||||| || ||   g
  ggguagau uga cuuaaagu ua uuguggu  auuaaaA  UCGUA UCAUA AG GU   u
ac        g   c        c  g       gg       AA     U     C  G  Uua 

>hsa-mir-1303 (-43.90)   [hsa-miR-1303:52-73]

--    g       u           aa     c     uuuu 
  ggcu ggcaaca agcgagaccuc  cucua aauuu    u
  |||| ||||||| |||||||||||  ||||| |||||     
  ucgg ccguugU UCGUUCUGGGG  GAGAU Uuaaa    u
uu    a       C           CA     U     uuuu 

>hsa-mir-1304 (-73.60)   [hsa-miR-1304:20-41]

--aaa             c                        au 
     cacuugagcccag ggUUUGAGGCUACAGUGAGAUGUG  c
     ||||||||||||| ||||||||||||||||||||||||  c
     gugaacucggguc ccaagcuccgaugucacucuacac  u
acuua             c                        cg 

>hsa-mir-1305 (-39.10)   [hsa-miR-1305:51-72]

--aa               a       uu     uguu    g 
    gauccugcuguuucu ccauuag  uugaa    uauu u
    ||||||||||||||| |||||||  |||||    |||| a
    uuaggacgacAGAGA GGUAAUC  AACUU    auag a
ccuc               G       UC     -UUc    a 

>hsa-mir-1243 (-16.20)   [hsa-miR-1243:5-26]

-------c     C     CA     AG   UG  a   -----    cca 
        uaaAA UGGAU  AUUAU  GAG  aa uaa     aggu   u
        ||||| |||||  |||||  |||  || |||     ||||   c
        auuuu aucua  uaaug  uuc  uu auu     uccg   u
ccaagaaa     u     aa     gu   gu  c   auuua    ucc 

>hsa-mir-548f-1 (-39.69)   [hsa-miR-548f:51-69]

--           g          c          acauuac 
  auuagguuggu caaaaguaau acaguuuuug       u
  ||||||||||| |||||||||| ||||||||||        
  uaauccaacca gUUUUCAUUA UGUCAAAAAc       u
ga           g          A          agaaacu 

>hsa-mir-548f-2 (-46.10)   [hsa-miR-548f:59-77]

uaauaac                 ca              au     c 
       uauuagguuggugcgaa  uaauugcaguuuuu  cauua u
       |||||||||||||||||  ||||||||||||||  |||||  
       auaauccaaccacgUUU  AUUAAUGUCAAAAA  guaau u
ugauuuu                 UC              cg     u 

>hsa-mir-548f-3 (-43.40)   [hsa-miR-548f:54-72]

--                cc        a           uuu 
  auuagguuggugcaaa  uaauugca uuuuugcaguu   u
  ||||||||||||||||  |||||||| |||||||||||   u
  uaauccaaccacgUUU  AUUAAUGU AAAAAcguuaa   a
ca                UC        C           uga 

>hsa-mir-548f-4 (-31.00)   [hsa-miR-548f:63-81]

---        acg  uuag    g g          a ug       c     a 
   gaguucua   ua    guug u caaaaguaau g  guuuuug cauua a
   ||||||||   ||    |||| | |||||||||| |  ||||||| |||||  
   uuuaagau   au    uaac a gUUUUCAUUA U  CAAAAAc guaau a
gac        --a  --ua    a g          A GU       a     g 

>hsa-mir-548f-5 (-37.70)   [hsa-miR-548f:52-70]

--          c            c  gu            u 
  uauuagguug ugcaaaaguaau au  uuuuuuccauug a
  |||||||||| |||||||||||| ||  ||||||||||||  
  auaauccaac augUUUUCAUUA UG  AAAAAggguaau a
cg          c            A  UC            g 

>hsa-mir-1244-1 (-16.70)   [hsa-miR-1244:55-80]

---------       uccga   uu    ua   uuuuug    u    uu 
         aucuuau     gca  ccag  acu      ugua guac  a
         |||||||     |||  ||||  |||      |||| ||||   
         UAGAGUA     UGU  GGUU  UGA      Auau caug  g
aaaaaUUGG       -----   UU    GA   ------    -    uc 

>hsa-mir-1245 (-30.90)   [hsa-miR-1245:45-65]

a       a               uc   --u  u 
 uuuaugu uaggccuuuagauca  uga   gu g
 ||||||| |||||||||||||||  |||   || a
 aaauaUA AUCCGGAAAUCUAGU  Auu   ca a
-       C               GA   ucu  u 

>hsa-mir-1246 (-19.21)   [hsa-miR-1246:11-29]

--   -au   ugA       -------     AG    a u 
  ugu   ccu   AUGGAUU       UUUGG  CAGG g g
  |||   |||   |||||||       |||||  |||| |  
  acg   gga   uaccuaa       aaacc  gucc c g
ua   auc   ---       cuaaagg     ca    a a 

>hsa-mir-1247 (-57.70)   [hsa-miR-1247:40-61]

c    u  -    ---c  a   c  cccc   -  --c       A  C   C  UU   C     Ac  ugc 
 cgcu gc cucg    cc gcg ag    ggc cg   ugggcgc CC GUC CG  CGU CCCGG  gu   u
 |||| || ||||    || ||| ||    ||| ||   ||||||| || ||| ||  ||| |||||  ||    
 gcgg cg gagc    gg cgc uc    ccg gu   gcccgcg gg cag gc  gca gggcc  ca   c
-    -  a    ccca  -   u  --ca   a  caa       a  u   a  -u   a     -c  ucu 

>hsa-mir-1248 (-34.50)   [hsa-miR-1248:4-30]

--------uuuAC        AUAA C   G     ---AA        c          
             CUUCUUGU    G ACU UGCUA     auugcaga acuaggacc 
             ||||||||    | ||| |||||     |||||||| |||||||| a
             gaagaaca    c uga acgau     uaacguuu ugguucugu 
acgacaaugaaaa        --ca a   g     cguaa        u          

>hsa-mir-1249 (-32.70)   [hsa-miR-1249:41-62]

----g         a  a  u    caa     cuc 
     ggaggaggg gg ga gggc   guucc   u
     ||||||||| || || ||||   |||||    
     CUUCUUCCC CC CU CCCG   CAagg   g
guccA         -  C  U    ---     ucg 

>hsa-mir-1250 (-53.10)   [hsa-miR-1250:24-44]

--    -c     ------   -    c    -  -C  U      ---          uugc 
  cugu  ccgcu      ggc cugg aggu gA  GG GCUGGA   UGUGGCCUUU    c
  ||||  |||||      ||| |||| |||| ||  || ||||||   ||||||||||    u
  gaca  gguga      ccg gacc ucca cu  cc cgaccu   acaccggaaa    u
cg    cc     agucuc   a    u    a  ua  -      uuu          ucuu 

>hsa-mir-1251 (-22.00)   [hsa-miR-1251:5-25]

-----  gg  U  A    CCA         --c  c 
     gu  AC CU GCUG   AAGGCGCUu   uc u
     ||  || || ||||   |||||||||   || u
     ca  ug ga cgac   uuucgcgag   ag c
cggua  ga  u  c    ucg         aca  u 

>hsa-mir-1253 (-47.50)   [hsa-miR-1253:24-44]

-a  --ag  a    ua      a    A A                gaug   a 
  gc    ca gaga  gaaucc aaAG G AGAAGAUCAGCCUGCA    ugg c
  ||    || ||||  |||||| |||| | ||||||||||||||||    |||  
  cg    gu uucu  cuuagg uuuc c ucuucuagucggacgu    auc u
ac  aaga  a    --      g    c c                --aa   g 

>hsa-mir-1254 (-39.50)   [hsa-miR-1254:18-41]

ggu  g      ---gc   -A      AA       CC       -a  ua 
   gg aggauu     uug  GCCUGG  GCUGGAG  UGCAGUg  ac  u
   || ||||||     |||  ||||||  |||||||  |||||||  ||  c
   cu uccuaa     aac  cggauc  cgaccuc  augucac  ug  a
-au  g      aguaa   aa      --       --       cg  uu 

>hsa-mir-1255a (-61.30)   [hsa-miR-1255a:28-50]

--au    aauccuuu                            AG   A          
    ugga        gaguugcuucucaAGGAUGAGCAAAGAA  UAG UUuuuuaga 
    ||||        ||||||||||||||||||||||||||||  ||| |||||||| u
    accu        cucaacgaagaguuccuacucguuucuu  auc aagaaaucu 
aauu    ----auuc                            cu   a          

>hsa-mir-1256 (-50.22)   [hsa-miR-1256:35-56]

------     gc          uuugaagcuuu    c  G             AC      u a 
      aguca  cuguugaagc           gaug cA GCAUUGACUUCUC  UAGCUg g a
      |||||  ||||||||||           |||| || |||||||||||||  |||||| | a
      ucggu  gauaacuuug           cuac gu cguaacugaagag  aucgau c g
acuuug     -a          ---------uu    a  a             aa      c u 

>hsa-mir-1257 (-45.20)   [hsa-miR-1257:22-42]

--  c u    --u    c    --  A     U      UU --   CCc   u ca   c 
  gc c gggc   ugug uugg  gg GUGAA GAUGGG  C  UGA   cca g  ccc u
  || | ||||   |||| ||||  || ||||| ||||||  |  |||   ||| |  |||  
  cg g cccg   gcac aacc  cc cacuu cuaccc  g  acu   ggu c  ggg g
uc  u u    uuc    c    gu  c     c      cg uc   -ac   c cc   u 

>hsa-mir-1258 (-60.60)   [hsa-miR-1258:44-64]

--                              ugcg 
  cuguggcuuccacgaccuaauccuaacucc    a
  ||||||||||||||||||||||||||||||    g
  gacaccgAAGGUGCUGGAUUAGGAUUGAgg    u
ag                              uccc 

>hsa-mir-1259 (-31.15)   [hsa-miR-1259:16-36]

--gaac   cu          AU   ---    UA    UUuuccccgac          
      uuc  gcuggcAUAU  GAU   GACU  GCUU           agaucgacu 
      |||  ||||||||||  |||   ||||  ||||           |||||||| a
      gag  cgaccguaua  cug   uuga  cgaa           ucuaguugu 
cucgac   uu          gu   ucu    -c    --ucuuuucaa          

>hsa-mir-1260 (-20.64)   [hsa-miR-1260:14-31]

--      -cca  ucA    ACC    -  A  Aaaaca 
  accuuu    gc   UCCC   UCUG CC CC      c
  ||||||    ||   ||||   |||| || ||       
  uggaaa    cg   aggg   agac gg gg      u
aa      aaac  -ug    ---    u  -  cgcuac 

>hsa-mir-548g (-31.22)   [hsa-miR-548g:54-75]

-agu     ga  a                      u  auuac 
    uauua  uu gugcaaaaguaauugcaguuuu gc     g
    |||||  || |||||||||||||||||||||| ||     u
    auaau  aa CAUGUUUUCAUUAAUGUCAAAA cg     u
cuuc     ac  c                      -  guauc 

>hsa-mir-1261 (-30.20)   [hsa-miR-1261:5-23]

--         U    C  UG C    gg     uu ug u 
  ugcuAUGGA AAGG UU  G UUau  ggaua  g  g u
  ||||||||| |||| ||  | ||||  |||||  |  | g
  acgauaccu uuuc aa  c agua  ccuau  u  c a
cg         c    a  gu -    ga     cu gu u 

>hsa-mir-1262 (-23.31)   [hsa-miR-1262:14-35]

--   u     ---g  gAU    G  -------   G         gaaag 
  auc acaau    gu   GGGU AA       UUU UAGAAGGAU     u
  ||| |||||    ||   |||| ||       ||| |||||||||      
  uag uguua    ca   uccg uu       aag gucuuccua     c
ua   -     agaa  acu    g  uuuaauc   g         agaaa 

>hsa-mir-1263 (-54.40)   [hsa-miR-1263:13-34]

--                  C C               u   a 
  cuaccccaaaauAUGGUA C UGGCAUACUGAGUau uua u
  |||||||||||||||||| | ||||||||||||||| |||  
  gaugggguuuuauaccgu g accguaugacucaua ggu a
ac                  u u               c   c 

>hsa-mir-548n (-45.40)   [hsa-miR-548n:10-31]

--                        A      cg u 
  agguuggugCAAAAGUAAUUGUGG UUUUGU  u a
  |||||||||||||||||||||||| ||||||  | a
  uccaaccacguuuucauuaacgcc aaaacg  a a
aa                        c      au a 

>hsa-mir-548m (-59.00)   [hsa-miR-548m:15-35]

--                                   u       
  auauuagguuggugCAAAGGUAUUUGUGGUUUUUG cauuaa 
  ||||||||||||||||||||||||||||||||||| ||||| a
  uauaauccaaccacguuuccauaaacaccgaaaac guaaug 
au                                   -       

>hsa-mir-1265 (-49.90)   [hsa-miR-1265:14-35]

--           c                       aag ca 
  augguuuggga uCAGGAUGUGGUCAAGUGUUGUU   g  u
  ||||||||||| |||||||||||||||||||||||   |   
  uaccaaaccuu aguuuuacaccaguucauaacaa   c  g
ua           a                       gga uu 

>hsa-mir-548o (-22.60)   [hsa-miR-548o:87-108]

--     a   ugu  u       ---a   uu  ---u   -cu     -aua   au   u 
  uggug aaa   gu gauugua    ugg  cc    auu   gauca    aac  ggu u
  ||||| |||   || |||||||    |||  ||    |||   |||||    |||  |||  
  accaC UUU   CA UUGACGU    ACC  gg    uaa   cuagu    uug  ccg g
ca     G   --U  -       CAAA   -u  cacu   aau     aaca   au   a 

>hsa-mir-1266 (-58.30)   [hsa-miR-1266:13-35]

--   --gg                U             --  g 
  aca    uagugucCCUCAGGGC GUAGAACAGGGCU  gg a
  |||    |||||||||||||||| |||||||||||||  || u
  ugu    gucacagggagucccg uaucuugucccga  uc u
ac   acga                -             aa  a 

>hsa-mir-1267 (-45.40)   [hsa-miR-1267:12-32]

--   --         C                   ccuc 
  cuc  ccaaaucuC UGUUGAAGUGUAAUCCCCA    c
  |||  ||||||||| |||||||||||||||||||     
  gag  gguuuagag acaacuuuacauuaggggu    a
ag   ua         u                   uacg 

>hsa-mir-1268 (-25.60)   [hsa-miR-1268:5-22]

--     GGG  U      G        
  uagcC   CG GGUGGU GGGGccu 
  |||||   || |||||| |||||| g
  gucgg   gu ucaucg cccuggu 
ga     -ag  u      a        

>hsa-mir-1269 (-70.61)   [hsa-miR-1269:67-88]

--    uugccua                u                a  cuga  ac 
  ugga       gaccagggaagccagu ggcauggcucagucca gu    cc  c
  ||||       |||||||||||||||| |||||||||||||||| ||    ||   
  accu       cuggucccuucGGUCA UCGUGCCGAGUCAGGU cg    gg  u
cg    -------                -                C  -uaa  ag 

>hsa-mir-1270-1 (-33.50)   [hsa-miR-1270:13-35]

--  c         CU       U         G     ggu 
  ca agaguuaua  GGAGAUA GGAAGAGCU UGUug   a
  || |||||||||  ||||||| ||||||||| |||||    
  gu ucucggugu  cuucuau ucuuuucgg acaau   u
ac  u         au       u         -     gaa 

>hsa-mir-1272 (-43.30)   [hsa-miR-1272:20-45]

--    au      --u   ug G    U AUG     ---A A      --AA   u   cagug    ua 
  ccag  cagauc   ggg  c AUGA G   GCAGC    A UUCUGA    acg gcu     ucuu  u
  ||||  ||||||   |||  | |||| |   |||||    | ||||||    ||| |||     ||||   
  gguc  gucugg   cuc  g ugcu c   cgucg    u aagauu    ugc cga     agga  a
au    gg      ugu   gu -    - -ga     gaug a      caaa   -   ----a    ca 

>hsa-mir-1273 (-47.50)   [hsa-miR-1273:76-100]

--u    c     aa      --gaa       gg     gu       a  -  a 
   gagg aggag  uugcuu     cccgggu  uggag  ugcagug gc ca g
   |||| |||||  ||||||     |||||||  |||||  ||||||| || ||  
   UUCU UUCUC  AACGAA     GGGuccg  accuc  acgucac cg gu a
agg    -     AG      ACAGC       --     --       -  c  u 

>hsa-mir-1274a (-19.50)   [hsa-miR-1274a:14-31]

--    -  c uguuu  C C   -U     -    c 
  gaug uc c     GU C UGU  CAGGC GCCA c
  |||| || |     || | |||  ||||| ||||  
  cuac ag g     ca g aca  gucug cggu u
ca    c  a uuuau  u a   cc     u    g 

>hsa-mir-548h-1 (-45.30)   [hsa-miR-548h:21-42]

--    u ----c       g              CG        GU     c 
  ucug c     auuaggu ggugcAAAAGUAAU  CGGUUUUU  Cauua u
  |||| |     ||||||| ||||||||||||||  ||||||||  |||||  
  agac g     uaaucca ucacguuuucauua  gucaaaaa  guaau u
au    c aauua       g              ag        ug     u 

>hsa-mir-548h-2 (-50.20)   [hsa-miR-548h:16-37]

--                        C C   U         ac 
  guauuagguuggugcAAAAGUAAU G GGU UUUGUCauu  u
  |||||||||||||||||||||||| | ||| |||||||||   
  uauaauccaaccacguuuucauua c cca aaacgguaa  u
aa                        a a   c         cu 

>hsa-mir-548h-3 (-54.00)   [hsa-miR-548h:29-50]

--     -------uu    augua                     C          UC    a 
  ucuga         cugc     uuagguuggugcAAAAGUAAU GCGGUUUUUG  auug a
  |||||         ||||     ||||||||||||||||||||| ||||||||||  ||||  
  agacu         gaug     aauccaaccacguuuucauua cgucaaaaac  uaau a
au     ucugucacu    ---aa                     a          ga    g 

>hsa-mir-548h-4 (-59.20)   [hsa-miR-548h:17-38]

--  ---                       C                cuuu   uac 
  gc   uauuagguuggugcAAAAGUAAU GCGGUUUUUGUCauua    aau   u
  ||   ||||||||||||||||||||||| ||||||||||||||||    |||    
  cg   auaauccaaccacguuuucauua cgccaaaaacaguaau    uug   u
au  uuc                       a                uacu   cau 

>hsa-mir-1275 (-26.43)   [hsa-miR-1275:18-34]

--       gagaaaggguG         -------   UGU    ug 
  ccucugu           UGGGGGAGA       GGC   Cuug  u
  |||||||           |||||||||       |||   ||||   
  ggagacg           accccuuuu       ccg   gaau  c
ag       ---------ga         auucaaa   uau    gu 

>hsa-mir-1276 (-32.30)   [hsa-miR-1276:12-31]

--  -   gcu    -A   A  C U         ---- -   g 
  cc cca   aggU  AAG GC C GUGGAGACA    c cug a
  || |||   ||||  ||| || | |||||||||    | |||  
  gg ggu   uccg  uuc cg g caccucugu    g gac u
uc  c   agu    gg   a  a u         acaa a   u 

>hsa-mir-302e (-20.70)   [hsa-miR-302e:6-22]

----uu     A     ---------     G  --     uu 
      gggUA GUGCU         UCCAU CU  Ucagu  c
      ||||| |||||         ||||| ||  |||||   
      uccau cacga         aggua ga  gguca  c
agauau     c     uaaugaugu     -  au     uu 

>hsa-mir-302f (-10.20)   [hsa-miR-302f:27-43]

   -g       ---cu       uu 
ucu  uguaaac     ggcaauu  c
|||  |||||||     |||||||  a
aga  auaUUUG     UCGUUAA  c
   aa       UACCU       Uu 

>hsa-mir-1277 (-34.60)   [hsa-miR-1277:47-68]

--   uc     u            g        ug au 
  acc  ccaaa auauauauauau uacguaug  u  a
  |||  ||||| |||||||||||| ||||||||  |   
  ugg  gguUU UAUGUAUAUAUA AUGCAUau  a  u
uu   gu     U            G        gu aa 

>hsa-mir-548p (-33.80)   [hsa-miR-548p:47-68]

--    g      a     u               uc   ac 
  auua guuggu uaaaa uaauugcaguuuuug  auu  u
  |||| |||||| ||||| |||||||||||||||  |||   
  uaau uaacca guUUU AUUGACGUCAAAAAC  Uaa  u
ca    g      c     C               GA   cu 

>hsa-mir-548i-1 (-68.20)   [hsa-miR-548i:39-60]

-c         -----u        -----------caccc                          GGA           a 
  agauggcuc      gaaguuug                uauuagguuggugcAAAAGUAAUUGC   UUUUGCCauua a
  |||||||||      ||||||||                ||||||||||||||||||||||||||   |||||||||||  
  ucuaccgag      uuucaaac                augauccgaccauguuuuuauuaacg   aaaacgguaau a
ac         ucccug        caucuuccucuuuucu                          aua           g 

>hsa-mir-548i-2 (-54.90)   [hsa-miR-548i:39-60]

-u      c  -----    g    -----------caucc      u                   GGA           a 
  agaugg uc     cgaa uuug                uauuag uuggugcAAAAGUAAUUGC   UUUUGCCauua a
  |||||| ||     |||| ||||                |||||| |||||||||||||||||||   |||||||||||  
  ucuacc ag     gcuu aaac                augauc gaccauguuuuuauuaacg   aaaacgguaau a
ac      u  ucccu    g    aaucuuccucuuuucu      c                   aua           g 

>hsa-mir-548i-3 (-60.90)   [hsa-miR-548i:39-60]

-c         -----        -----------acaucc         u                GGA           a 
  agauggcuc     cgaaguuu                 uauuagguu gugcAAAAGUAAUUGC   UUUUGCCauua a
  |||||||||     ||||||||                 ||||||||| ||||||||||||||||   |||||||||||  
  ucuaccgag     guuucaaa                 augauccga cauguuuuuauuaacg   aaaacgguaau a
ac         ucccu        ccaucuuccucuuuucu         c                aua           g 

>hsa-mir-548i-4 (-36.70)   [hsa-miR-548i:11-32]

--            A    A   C  A       auac 
  agguuggugcAA AGUA UUG GG UUUUGCC    u
  |||||||||||| |||| ||| || |||||||    u
  uccaaccacguu uuau aac cc aaaacgg    u
ua            a    a   a  a       caau 

>hsa-mir-1278 (-50.20)   [hsa-miR-1278:50-71]

--                             c   ga   c 
  auuugcucauagaugauaugcauaguacu cca  acu a
  ||||||||||||||||||||||||||||| |||  ||| u
  uaagcgagUAUCUACUAUACGUGUCAUGA ggu  uga u
ga                             U   --   a 

>hsa-mir-1279 (-12.10)   [hsa-miR-1279:15-31]

auauucacaaaaa   A   -UG         aa 
             uUC UAU   CUUCUUUCU  u
             ||| |||   |||||||||  g
             aag aua   gaagaaaga  c
--------ccuuc   a   uga         ac 

>hsa-mir-1274b (-34.30)   [hsa-miR-1274b:15-31]

--        c   c     U UU G   -    c 
  cuucuuca uca gUCCC G  C GGC GCCA u
  |||||||| ||| ||||| |  | ||| ||||  
  gaagaagu agu caggg c  g cug cggu u
ag        a   -     - uu g   u    g 

>hsa-mir-1281 (-32.50)   [hsa-miR-1281:33-49]

-      cacc            gugu 
 aggggg    gggaggagguga    c
 ||||||    ||||||||||||     
 ucccCC    UCCUCCUCCGCU    u
u      -CUC            guuc 

>hsa-mir-1282 (-39.40)   [hsa-miR-1282:9-28]

ccuucu   CG          UC       ----   g   g     cgag   c 
      ucU  UUUGCCUUUU  UGCUUcu    gcu cau aucuc    ucc u
      |||  ||||||||||  |||||||    ||| ||| |||||    |||  
      agg  aaacgggaga  auggagg    cgg gua uagag    ggg g
-----c   aa          cc       guca   g   g     --au   g 

>hsa-mir-1283-2 (-37.80)   [hsa-miR-1283:14-35]

--            gU  A      A     C     guug  u 
  cucaagcuguga  CU CAAAGG AAGCG UUUCU    uc g
  ||||||||||||  || |||||| ||||| |||||    || a
  gaguuuggcauu  ga guuucc uucgc aaaga    ag a
aa            gu  g      c     u     --aa  a 

>hsa-mir-1284 (-34.39)   [hsa-miR-1284:30-51]

--------auuu   uauau        uuaau      U        CCU        uuaaauu 
            uga     aagccagu     guuuUC AUACAGAC   GGCUUUUC       u
            |||     ||||||||     |||||| ||||||||   ||||||||        
            acu     uuuggucg     caaagg uauguuug   ccgaaagg       u
ucuaaaagucau   --uuc        ----u      u        uac        uuauaua 

>hsa-mir-1288 (-29.60)   [hsa-miR-1288:45-65]

g     gu  a  ag         acu   ac     a 
 agggu  ug uc  cagaucagg   gua  ucacc u
 |||||  || ||  |||||||||   |||  ||||| a
 uuccg  ac AG  GUCUAGUCC   CGU  GGUgg g
-     uc  c  AG         ---   CA     u 

>hsa-mir-1292 (-34.60)   [hsa-miR-1292:3-27]

     G      UU    CA A   U   -   g 
ccUGG AACGGG  CCGG  G CGC Gag guu c
||||| ||||||  ||||  | ||| ||| ||| g
ggacc uugccc  ggcc  c gcg cuc cag u
     -      uc    -c -   -   g   u 

>hsa-mir-1252 (-25.40)   [hsa-miR-1252:5-26]

                 A       A   aa 
agaaAGAAGGAAAUUGA UUCAUUU gaa  g
||||||||||||||||| ||||||| |||  a
ucuuuuuuccuuuaauu gaguaaa cuu  g
                 c       c   aa 

>hsa-mir-1255b-1 (-17.20)   [hsa-miR-1255b:3-24]

--     ---A GA       AA    U    ua 
  uaCGG    U  GCAAAGA  GUGG Uucu  a
  |||||    |  |||||||  |||| ||||   
  guguc    a  uguuucu  cauc aagg  a
aa     guag ag       --    u    ua 

>hsa-mir-1255b-2 (-40.60)   [hsa-miR-1255b:6-27]

-     C                      g gc 
 ucuua GGAUGAGCAAAGAAAGUGGUUu c  c
 ||||| |||||||||||||||||||||| |  u
 ggaau ccuacucguuucuuucaccaaa g  c
a     a                      - aa 

>hsa-mir-1280 (-47.30)   [hsa-miR-1280:5-21]

--uc         G U    CCC   cc        a   u cc  -  a 
    ugUCCCACC C GCCA   ucc  ucugccuc gug g  ag gc u
    ||||||||| | ||||   |||  |||||||| ||| |  || ||  
    acagggugg g cggu   agg  ggacggag cac c  uc cg c
gaca         - -    ---   uc        a   u ac  a  a 

>bol-MIR824 (-199.98)   [bol-miR824:22-42]

    -----    ug    u               U           -uuuuuuguuu     g   a       uu aaucuguagugaguauuaaggaaaauagcuuguucaacauaucacacuacucuuuuagaaacaauacuauauuuuagaugcuuuuccagcuugauauacguuguuuuguuauguauaucuguauuaucccggcuaccaaaacguuaagaaauaaggugaacauccuaaaaccugcauccaauuagaaaggucuaggucacagauauuacuuguuaucucuugauuaagcuauuuuauuucua 
ccuc     gagu  ucuu caugucUAGACCAUU GUGAGAAGGGA           gcacc uuc ccccacu  c                                                                                                                                                                                                                                                  u
||||     ||||  |||| ||||||||||||||| |||||||||||           ||||| ||| |||||||  |                                                                                                                                                                                                                                                   
ggag     cuca  ggag guguagaucugguag uacucuucccu           cgugg aag gggguga  g                                                                                                                                                                                                                                                  c
    uuacu    gu    c               c           uauuaungggu     -   -       gg guucaauaaaugauacuucauuagaucacaucgauucaucacguucuaaguucaagaaucgauaguacuuuauggagauugugaggucugucuccaaacuguagagaauccguuuuacagacaggcuucacaccguaucagguuuuuguuccuuuuauaauacauacgucguaggucuuuacaguacuuaccugaauuacauaaaaucaaauaugaauugaggacuuacuagacuaguacga 

>bra-MIR824 (-198.14)   [bra-miR824:22-42]

    -----    ug    u               U             -uuuuguuu     guuca          aaucuguagugaguauuaaggaaaauagcuuguucaacauaucacacuacucuuuuagaaacaaaacuauauuuuagaugcuuuuccagcuugauauacguuguuuuguuauguauaccuguauucucccggcuaccaaaacguuaagaaauaaggugaacaucuccccaaaaccugcauccaauuagaaaggucuaggucacagccauuacuugcuaucucucgauuaagcuauuuuauu 
ccuc     gagu  ucuu caugucUAGACCAUU GUGAGAAGGGAuu         gcacc     ccccacucuc                                                                                                                                                                                                                                                 u
||||     ||||  |||| ||||||||||||||| |||||||||||||         |||||     ||||||||||                                                                                                                                                                                                                                                 c
ggag     cuca  ggag guguagaucugguag uacucuucccuga         cgugg     ggggugaggg                                                                                                                                                                                                                                                 u
    uuacu    gu    c               c             uuauugggu     ---aa          guucaauaaaugauacuucauuugaucacaucgauucaucacguucuaaguucaagaaucgauaguacuuuauggagauugugaggucugucuccaaacuguagagcauccuuuuuacagacaggcuucacaccguaucagguuuuuguuuuauaauacauacgucguaggucuuuacaguacuuaccugaauuacauaaaauaaaauaugaauugaggacuuacuagacuacuacuacua 

>bna-MIR824 (-198.14)   [bna-miR824:22-42]

    -----    ug    u               U             -uuuuguuu     guuca          aaucuguagugaguauuaaggaaaauagcuuguucaacauaucacacuacucuuuuagaaacaaaacuauauuuuagaugcuuuuccagcuugauauacguuguuuuguuauguauaccuguauucucccggcuaccaaaacguuaagaaauaaggugaacaucuccccaaaaccugcauccaauuagaaaggucuaggucacagccauuacuugcuaucucucgauuaagcuauuuuauu 
ccuc     gagu  ucuu caugucUAGACCAUU GUGAGAAGGGAuu         gcacc     ccccacucuc                                                                                                                                                                                                                                                 u
||||     ||||  |||| ||||||||||||||| |||||||||||||         |||||     ||||||||||                                                                                                                                                                                                                                                 c
ggag     cuca  ggag guguagaucugguag uacucuucccuga         cgugg     ggggugaggg                                                                                                                                                                                                                                                 u
    uuacu    gu    c               c             uuauugggu     ---aa          guucaauaaaugauacuucauuugaucacaucgauucaucacguucuaaguucaagaaucgauaguacuuuauggagauugugaggucugucuccaaacuguagagcauccuuuuuacagacaggcuucacaccguaucagguuuuuguuuuauaauacauacgucguaggucuuuacaguacuuaccugaauuacauaaaauaaaauaugaauugaggacuuacuagacuacuacuacua 

>hsa-mir-1308 (-12.60)   [hsa-miR-1308:5-22]

ccccGC     U    -    GGc  a 
      AUGGG GGUU CAGU   ag a
      ||||| |||| ||||   ||  
      uaccc cuaa guua   uc u
cccuaa     -    u    aac  u 

>hsa-mir-664 (-24.40)   [hsa-miR-664*:11-34] [hsa-miR-664:49-71]

---gaa    gaaACU    A    AAA   U         ac 
      cauu      GGCU GGGA   UGA UGGAUagaa  u
      ||||      |||| ||||   ||| |||||||||  a
      guaa      CCGA CCCU   AUU ACUUAUcuu  u
aaaaaa    -aACAU    C    ---   U         au 

>hsa-mir-1306 (-33.80)   [hsa-miR-1306:55-72]

g  ag a    -c       uccccu  a        gugg   a 
 ug  c gucu  caccacc      gc aacgucca    ugc g
 ||  | ||||  |||||||      || ||||||||    |||  
 gc  g cagg  GUGGUGG      CG UUGCAggu    aug a
a  cu a    ua       ---UCU  G        ---a   g 

>hsa-mir-1307 (-57.30)   [hsa-miR-1307:80-101]

--     ag  -cc       ---  -ac   --c        c a   u       -a  u  a   gc   uc  ug 
  cauca  ac   agcugag   uc   ugu   acugccua c auc cgaccgg  cc cg ccg  ucg  ug  u
  |||||  ||   |||||||   ||   |||   |||||||| | ||| |||||||  || || |||  |||  ||   
  guggu  ug   ucgacuu   ag   acg   uggcggau g ugG GCUGGCU  GG GC GGC  Agc  ac  u
ca     cu  uuc       uua  cau   uac        a a   U       GC  U  -   UC   ua  cg 

>bna-MIR397a (-37.30)   [bna-miR397a:6-27]

      C       G              u  a   --c   uu    u 
gaacaU AUUGAGU CAGCGUUGAUGUga uu cuu   ucu  uuca u
|||||| ||||||| |||||||||||||| || |||   |||  ||||  
uuugua uaacucg guugcaacuacauu aa gaa   agg  aagu g
      u       -              u  c   auu   -u    u 

>bna-MIR397b (-38.70)   [bna-miR397b:6-27]

      C       G              u  a   --    uu    u 
gaacaU AUUGAGU CAGCGUUGAUGUga uu cuu  aucu  uuca u
|||||| ||||||| |||||||||||||| || |||  ||||  ||||  
uuugua uaacucg guugcaacuacauu aa gaa  uagg  aagu g
      u       -              u  c   au    -u    u 

>bna-MIR390a (-64.57)   [bna-miR390a:33-53]

        -   ugu   u      u       A         G           ugucucaccg    uauaa 
auuucagg uga   agu gagaag agcugua AGCUCAGGA GGAUAGCGCCa          guac     a
|||||||| |||   ||| |||||| ||||||| ||||||||| |||||||||||          ||||      
uagagucc auu   ucg uucuuc ucgguau uugaguccu ccuaucgcggu          uaug     a
        u   --u   -      u       c         a           --uauaucua    uuugu 

>bna-MIR390b (-50.20)   [bna-miR390b:18-38]

    --      au u  a          G           ucaug   aca 
guag  agaaga  c gu AAGCUCAGGA GGAUAGCGCCa     auc   c
||||  ||||||  | || |||||||||| |||||||||||     |||   a
cauc  ucuucu  g ua uuugaguccu ccugucgcggu     uag   c
    au      cg u  c          a           uuuua   cua 

>bna-MIR390c (-57.40)   [bna-miR390c:23-43]

      --ua      u      aA         G          augacucaucaccauuacu 
gcguag    gagaag agcugu  AGCUCAGGA GGAUAGCGCC                   a
||||||    |||||| ||||||  ||||||||| ||||||||||                    
uguauu    uucuuc ucggua  uugaguccu ccuaucgcgg                   u
      uucg      u      cc         a          uaauguauauguuucugua 

>bna-MIR171a (-41.80)   [bna-miR171a:74-94]

u   --caa   a      a ug          a     uc   c    agu 
 ggu     gcg gauauu g  cgguucaauc aauag  uca ucuu   u
 |||     ||| |||||| |  |||||||||| |||||  ||| ||||    
 cca     cGC CUAUAA C  GCCGAGUUag uuguu  agu agag   g
a   auaua   A      C GU          c     uu   u    aua 

>bna-MIR171b (-43.90)   [bna-miR171b:73-93]

   -a     a      a ug          a     --   ugu    acu 
ggu  acgcg gauauu g  cgguucaauc aauag  ucg   ucuc   u
|||  ||||| |||||| |  |||||||||| |||||  |||   ||||    
cca  ugcGC CUAUAA C  GCCGAGUUag uuguu  ggc   agag   g
   ac     A      C GU          c     uu   --u    aua 

>bna-MIR171c (-36.90)   [bna-miR171c:67-87]

   a      a ug          a     --   ua    uag 
gcg gauauu g  cgguucaauc aauag  ucg  cucu   c
||| |||||| |  |||||||||| |||||  |||  ||||    
cGC CUAUAA C  GCCGAGUUag uuguu  ggc  gaga   u
   A      C GU          c     uu   ua    uua 

>bna-MIR171d (-45.30)   [bna-miR171d:71-91]

   aug  a        ug             -aau  aca    uuu 
aca   cg gauauugg  cgguucaaucaga    cc   cucu   g
|||   || ||||||||  |||||||||||||    ||   ||||    
ugu   GC CUAUAACC  GCCGAGUUaguuu    gg   gaga   u
   -ga  A        GU             guuu  cua    ugu 

>bna-MIR171e (-44.20)   [bna-miR171e:70-90]

caaua  a        ug             -     aca    uuu 
     cg gauauugg  ugguucaaucaga aaacc   cucu   g
     || ||||||||  ||||||||||||| |||||   ||||    
     GC CUAUAACC  GCCGAGUUaguuu uuugg   gaga   u
---ga  A        GU             g     cua    ugu 

>bna-MIR171f (-41.30)   [bna-miR171f:84-104]

    a    uc  cuuu         c       c      --  ucc   uuacacacg 
acga agag  cu    gauauuggc ugguuca ucagau  cu   aga         u
|||| ||||  ||    ||||||||| ||||||| ||||||  ||   |||         a
ugcu ucuc  ga    CUAUAACCG GCCGAGU AGUcua  ga   ucu         c
    c    gu  --cu         C       U      uu  cuc   uacauauau 

>bna-MIR169a (-59.60)   [bna-miR169a:19-39]

u     -     u      C         UG           uaaaauaucugauaaguauuuua 
 gugac caaag agugug AGCCAAGGA  ACUUGCCGAuu                       u
 ||||| ||||| |||||| |||||||||  |||||||||||                       u
 cgcug guuuc uugcau ucgguuccu  ugaacggcuag                       u
g     u     u      a         gu           uacuaaaaaaagaaauuuuaugc 

>bna-MIR169b (-71.50)   [bna-miR169b:18-38]

     -     u  ug  C         U            ugaaau        aauacuuuacuaagacaucuuuucaguuucaaauuugucuu 
gugac caaag ag  ug AGCCAAGGA GACUUGCCGAuu      auauuuuu                                         g
||||| ||||| ||  || ||||||||| ||||||||||||      ||||||||                                         g
cgcug guuuc uu  ac ucgguuccu uugaacggcuag      uauaaaaa                                         a
     u     u  gu  a         u            ------        agaaauuugaugcuuuauuuaacauuaaagaaggaucggag 

>bna-MIR169c (-67.20)   [bna-miR169c:26-46]

      -au       u     uu  -          U    U     -uu  --   a   u       gcauggugucauguuaaaagu 
agauga   agaagaa cauau  gg UAGCCAAGGA GACU GCCUA   uc  uug gag aaaaugg                     u
||||||   ||||||| |||||  || |||||||||| |||| |||||   ||  ||| ||| |||||||                      
ucuacu   ucuucuu guaua  cc aucgguuccu cuga cggau   ag  aac uuc uuuuacc                     a
      cuc       -     uu  u          -    -     uau  ua   a   c       aguuuaacuuugauggauguc 

>bna-MIR169d (-91.30)   [bna-miR169d:40-60]

     -       aa      -au      uuuc   uu  -          U    U     -cu     -gcgaa g           -----     c  g          aa 
gaagg agauguc  agauga   aggaga    uau  gg UAGCCAAGGA GACU GCCUA   ucuuu      g aaaauggucac     ggugu au uuugaaagug  u
||||| |||||||  ||||||   ||||||    |||  || |||||||||| |||| |||||   |||||      | |||||||||||     ||||| || ||||||||||   
cuucc uuuacag  ucuacu   ucuucu    aua  cc aucgguuccu cuga cggau   agaaa      c uuuuaccagug     cuaua ug gaauuuuuac  a
     a       ac      cuu      -ugu   uu  u          -    -     uau     aauaug g           auuaa     -  a          au 

>bna-MIR169e (-73.30)   [bna-miR169e:252-272]

-guuuc     -   -            uu  c   cuuuu      ca    a      cuuucuuuguauuuuucgaauccaaauaauauuuuuuucuauaaauuuacuacgaaaauccuuuaaacaaucucuaacaaagu 
      aggca guc uccuuggcuauc  ga aug     uucuuc  uguu uaccuu                                                                                   a
      ||||| ||| ||||||||||||  || |||     ||||||  |||| ||||||                                                                                    
      UCCGU CAG AGGAACCGAUgg  uu uac     aagaag  auaa guggaa                                                                                   u
ucuuuA     U   U            -u  a   ----u      --    -      acuguaaaggaagauuucuuacguaugugaguggugcauguacguaaacauuauuuacguuuuucaccaucaaaagauuauug 

>bna-MIR169f (-79.20)   [bna-miR169f:31-51]

   aa      -au        uc   uu  -          U    U     -cu     -gcgaa g           ggugucauguuugaaagugaaua 
guc  agauga   aggagaau  uau  gg UAGCCAAGGA GACU GCCUA   ucuuu      g aaaauggucac                       u
|||  ||||||   ||||||||  |||  || |||||||||| |||| |||||   |||||      | |||||||||||                        
cag  ucuacu   ucuucuug  aua  cc aucgguuccu cuga cggau   agaaa      c uuuuaccagug                       a
   ac      cuu        -u   uu  u          -    -     uau     aauaug g           auuaacuauaugagaauauuuau 

>bna-MIR169g (-75.90)   [bna-miR169g:37-58]

      cg    c    --    u   a   u  g   -          U    U      -    uuaac    ua   a     uua 
gagaaa  guga auga  agaa gag agu gu ugg UAGCCAAGGA GACU GCCUGC gucu     acca  uca agacu   u
||||||  |||| ||||  |||| ||| ||| || ||| |||||||||| |||| |||||| ||||     ||||  ||| |||||    
cucuuu  cacu uacu  ucuu cuc uca ca acu aucgguuccu cuga cggaug cgga     uggu  agu ucuga   c
      -a    u    cc    u   c   -  g   u          -    -      u    ----u    ug   c     uag 

>bna-MIR169h (-73.90)   [bna-miR169h:37-58]

        g   c    --    u     g    g   -     A    U    U      gucuua     ua  u   a       aaa 
gagaaaug uga auga  agaa gagaa uugu ugg UAGCC AGGA GACU GCCUGC      gacca  uc auc aagacua   g
|||||||| ||| ||||  |||| ||||| |||| ||| ||||| |||| |||| ||||||      |||||  || ||| |||||||   a
cucuuuac acu uacu  ucuu cucuu gaca acu aucgg uccu cuga cggaug      uuggu  ag uag uucugau   u
        -   u    cc    u     -    g   u     c    -    -      -gcuaa     ua  -   c       agu 

>bna-MIR169i (-76.02)   [bna-miR169i:15-36]

    u      u  -          U    U     -Cu  u  uca    cau        uuuauguaca                   c 
agag cauguu ag UAGCCAAGGA GACU GCCUG   cu uu   ccuc   gauucaau          guuuuggauuacuaugcuu u
|||| |||||| || |||||||||| |||| |||||   || ||   ||||   ||||||||          ||||||||||||||||||| a
uuuc guacag uc aucgguuccu cuga cggac   ga aa   ggag   cuaaguug          uaaaacuuaaugauaugag a
    -      u  u          -    -     uuu  c  -ug    uuu        -------uuc                   a 

>bna-MIR169j (-71.20)   [bna-miR169j:9-30]

     -u            U    U     -Cu    uuc   uc  -c        uuuauacguugaaggguuuuggauuauug 
guguu  agUAGCCAAGGA GACU GCCUG   cuug   acc  ca  gauucaac                             u
|||||  |||||||||||| |||| |||||   ||||   |||  ||  ||||||||                             g
uacag  uuaucgguuccu cuga cggac   ggau   ugg  gu  cuaaguug                             c
     uu            -    -     uuu    ---   gu  uu        uacuaaaguuuaauaauauguacaacuua 

>bna-MIR169k (-62.00)   [bna-miR169k:34-55]

aaacggugaca   --    u   a   u  g   -     A    U    U      -    uaac    ua   c     uua 
           uga  agaa gag agu gu ugg UAGCC AGGA GACU GCCUGC gucu    acca  uca agacu   u
           |||  |||| ||| ||| || ||| ||||| |||| |||| |||||| ||||    ||||  ||| |||||    
           acu  ucuu cuc uca ca acu aucgg uccu cuga cggaug cgga    uggu  agu ucuga   c
-------cuuu   cc    u   c   -  g   u     c    -    -      u    ---u    ug   c     uag 

>bna-MIR169l (-86.60)   [bna-miR169l:25-46]

     -c         c     -u            U    U     -Cu    uuc   uc  -c        uuuauacguugaaggguuuuggauuauug 
caugg  gaaaagagu guguu  agUAGCCAAGGA GACU GCCUG   cuug   acc  ca  gauucaac                             u
|||||  ||||||||| |||||  |||||||||||| |||| |||||   ||||   |||  ||  ||||||||                             g
guacc  cuuuuuuca uacag  uuaucgguuccu cuga cggac   ggau   ugg  gu  cuaaguug                             c
     ua         -     uu            -    -     uuu    ---   gu  uu        uacuaaaguuuaauaauauguacaacuua 

>bna-MIR169m (-68.61)   [bna-miR169m:45-65]

u   u     ag      a     g     au      u  uaaU         A          auu      aagaauuu 
 aua guauc  agaguc ugcau ggaaa  agagaa ga    GAGCCAAAG UGACUUGCCG   uuacca        a
 ||| |||||  |||||| ||||| |||||  |||||| ||    ||||||||| ||||||||||   ||||||        a
 uau uauag  ucucag augua cuuuu  ucucuu cu    cucgguuuc gcugaacggu   aguggu        a
-   c     -a      a     g     cu      c  uugu         a          --c      aauaguca 

>bna-MIR168 (-70.40)   [bna-miR168:18-38]

     g   c   u  c              U     A      --g   g   cc    --     c 
uuacg cgg cuc ga UCGCUUGGUGCAGG CGGGA cugauu   gcu aca  gcca  cgugg u
||||| ||| ||| || |||||||||||||| ||||| ||||||   ||| |||  ||||  |||||  
agugc gcc gag cu agugaacuauguuc gcccu ggcuag   cga ugu  cggu  guacc u
     a   u   c  a              c     a      gga   g   -u    ug     u 

>bna-MIR167a (-54.90)   [bna-miR167a:18-39]

     -    g  ucu a         C             ua  u   uu     guuga      g 
ggugu acag ca   g UGAAGCUGC AGCAUGAUCUAAu  ac uuc  ucucu     uuuuau a
||||| |||| ||   | ||||||||| |||||||||||||  || |||  |||||     ||||||  
ccacg uguc gu   c acuuugacg uuguacuagauua  ug gag  agaga     aaggua c
     c    a  uac c         c             gc  u   -u     ----a      a 

>bna-MIR167b (-48.10)   [bna-miR167b:18-39]

    cac   -  u u a         C               --u   ---     c        
ggcg   cgg ca c g UGAAGCUGC AGCAUGAUCUAAuua   cuu   ucuuu ucuguug 
||||   ||| || | | ||||||||| |||||||||||||||   |||   ||||| |||||| a
ccgc   guc gu g c acuuugacg uuguacuagauuagu   gag   agaaa agguagc 
    ucu   a  u c c         c               ugu   uac     -        

>bna-MIR167c (-57.90)   [bna-miR167c:18-38]

     ac   -  u u a         C             ua  -     uu ---         ua 
ggugc  cgg ca c g UGAAGCUGC AGCAUGAUCUAgu  ac uuuau  c   uccguuguu  u
|||||  ||| || | | ||||||||| |||||||||||||  || |||||  |   |||||||||  c
cuacg  guc gu g c acuuugaug uuguacuagauua  ug gaaua  g   agguaacag  c
     cu   a  u c c         c             gc  u     gg aaa         ua 

>bna-MIR166a (-52.40)   [bna-miR166a:111-131]

-uuga       uu      cu   a        cuu   --au        uucuucgauuuaaucga 
     gggaaug  guuugg  cga gacucuag   auc    guuagauc                 a
     |||||||  ||||||  ||| ||||||||   |||    ||||||||                  
     CCCUUAC  CGGACC  GCU cugggauu   uag    uagucuag                 u
aaccC       UU      AG   g        --u   gauu        aguuuguaccuccaaac 

>bna-MIR166b (-42.10)   [bna-miR166b:91-111]

     c   u      u      cu   g c   --------   a   g     ug g  g 
aaguu agg ggauga gcuugg  cga a cau        uca uau aucau  u au a
||||| ||| |||||| ||||||  ||| | |||        ||| ||| |||||  | ||  
uucaa uCC CUUACU CGGACC  GCU u gua        agu aua uagua  a ua u
     c   C      U      AG   g a   auaguaau   a   g     gu g  g 

>bna-MIR166c (-41.10)   [bna-miR166c:93-113]

-gagccaa     c   u      u      cu   -g c     --aa   g     ug g  g 
        aaguu agg ggauga gcuugg  cga  a cauua    uau aucau  u au u
        ||||| ||| |||||| ||||||  |||  | |||||    ||| |||||  | ||  
        uucaa uCC CUUACU CGGACC  GCU  u guaau    aua uagua  a ua u
uuugcaca     c   C      U      AG   ga a     agua   g     gu g  g 

>bna-MIR166d (-44.94)   [bna-miR166d:77-97]

----------guggu     -uu g     a a   c  uu      cu     -    ga  aaugaa 
               gcggu   a ggcug g gga ug  gucugg  cgagg ucau  ag      a
               |||||   | ||||| | ||| ||  ||||||  ||||| ||||  ||       
               cgcua   u ccgac C CCU AC  CGGACC  GCUcu agua  uc      c
cacccguauauauac     uuu g     c C   U  UU      AG     u    aa  caaauc 

>bna-MIR164 (-38.80)   [bna-miR164:7-27]

ccac       A  CA             ccaacaa   c    u 
    guUGGAG AG  GGGCACGUGCAaa       aca gaga c
    ||||||| ||  |||||||||||||       ||| ||||  
    caaccuc uc  cucgugcacguuu       ugu cucu u
-gua       c  ac             -----aa   a    a 

>bna-MIR161 (-51.60)   [bna-miR161:14-34]

--     u   uc          C              c    auuuguuuuuaaguuuuugcucuca 
  uuuau gcu  gaUCAAUGCA UGAAAGUGACUAca cagg                         u
  ||||| |||  |||||||||| |||||||||||||| ||||                          
  aggua cga  cuaguugcgu acuuucacugaugu gucu                         c
aa     -   ua          a              a    ccgauuaaaaguagaaauaguauau 

>bna-MIR159 (-77.60)   [bna-miR159:161-181]

-            a         c      -uu    ------      aga      g  a  c    a uc     -    cu       aua 
 guagggcuccuu uaguucaaa gagagu   agca      ggguaa   aaagcu cu ag uaug a  ccaua agcc  aauccuu   u
 |||||||||||| ||||||||| ||||||   ||||      ||||||   |||||| || || |||| |  ||||| ||||  |||||||   a
 cAUCUCGAGGGA GUUAGGUUU uucuca   ucgu      cccguu   uuucga ga uc auac u  gguau uugg  uuaggaa   u
a            A         c      uuu    uaauuu      caa      g  c  u    a uc     a    -u       aaa 

>bna-MIR156b (-78.00)   [bna-miR156b:25-45]

     uu     ------u    c    u  U        -           u     --u        a  a auauguauguaucaucacaccgccuguggaugau 
uaggu  gagag       gaug uggu gU GACAGAAG AUAGAGAGCAC aagga   gacaugca gu c                                  u
|||||  |||||       |||| |||| || |||||||| ||||||||||| |||||   |||||||| || |                                   
aucca  cuuuc       uuau acca ca cugucuuc uaucucucgug uuucu   cuguacgu cg g                                  a
     uu     uucuucu    u    c  -        a           c     cau        c  a agagagagagagaaaacuuaaccaaaauaaaaac 

>bna-MIR1140 (-67.80)   [bna-miR1140:120-140]

cuca   uuuua               c                 u      cuuucuaaagucuucaaaauuuagu 
    auc     uauggcuccgauugg uuuaggcuguuguggcu ugacuu                         u
    |||     ||||||||||||||| ||||||||||||||||| ||||||                         u
    uag     guacCGAGGCUAACC AAAUCCGACAacaccga acugaa                         u
---g   ---ug               -                 c      aauuuuuuuaaauugcacuaacacu 

>bna-MIR156c (-55.50)   [bna-miR156c:18-38]

        -ugca   u           -           u     --u  c    aaguacaaggauauaaggaaauu 
gggaguga     ggu gUUGACAGAAG AUAGAGAGCAC aagga   ga augc                       c
||||||||     ||| ||||||||||| ||||||||||| |||||   || ||||                        
uccuuauu     cca uaacugucuuc uaucucucgug uuucu   uu uacg                       a
        uauua   -           a           u     cau  c    uccgagaaaaaaggagagaaaga 

>vvi-MIR156a (-46.90)   [vvi-miR156a:11-30]

--agaaau   u          -           -a     c uc   u      
        aug UGACAGAAGA GAGGGAGCACa  cccag a  agc aaaga 
        ||| |||||||||| |||||||||||  ||||| |  ||| |||| c
        uac acugucuucu cucucucgugu  ggguu u  ucg uuucu 
ccucacac   u          u           ga     c uu   -      

>vvi-MIR156b (-53.30)   [vvi-miR156b:11-30]

--     a  a         -     -       a         uu     a 
  cauug aa cUGACAGAA GAGAG UGAGCAC cagaggcaa  guaua g
  ||||| || ||||||||| ||||| ||||||| |||||||||  |||||  
  gugac uu gacugucuu cucuu acucgug guuuucguu  cguau u
cc     c  c         u     u       c         uu     u 

>vvi-MIR156c (-60.20)   [vvi-miR156c:11-30]

---a    a           -             a  u   cug   uu     g 
    agga uaggUGACAGA AGAGAGUGAGCAC ca ggu   uuc  gcaug g
    |||| ||||||||||| ||||||||||||| || |||   |||  |||||  
    uccu gucuacugucu ucucucacucgug gu ucg   aag  cguac u
ucuc    -           a             c  c   ---   uu     c 

>vvi-MIR156d (-47.50)   [vvi-miR156d:11-30]

--agaga  ga         -     -       au  a    auuu     a 
       ga  cUGACAGAA GAGAG UGAGCAC  gc ggca    guaua g
       ||  ||||||||| ||||| |||||||  || ||||    |||||  
       cu  gacugucuu cucuc acucgug  ug ccgu    cauau g
ucgugga  uc         u     c       cg  g    -auc     g 

>vvi-MIR156e (-48.20)   [vvi-miR156e:11-30]

--  a   ua         --  A          u  u   ucuu   uu     aa 
  gu ugg  ggUGACAGA  GG GAGUGAGCAC ca ggu    uuc  gcaug  g
  || |||  |||||||||  || |||||||||| || |||    |||  |||||  u
  cg acu  ccacugucu  cc cucauucgug gu ucg    aag  cguau  u
ua  a   cc         au  -          u  c   ----   uu     cu 

>vvi-MIR156f (-45.40)   [vvi-miR156f:11-31]

--uuau             A   -U      C   --    aa  u  c    a 
      guucugUUGACAG AGA  AGAGAG ACa  acug  ca ac caag g
      ||||||||||||| |||  |||||| |||  ||||  || || ||||  
      caagacaacuguc ucu  ucucuc ugu  ugac  gu ug guuc g
gucguu             c   uc      c   uc    ga  u  u    g 

>vvi-MIR156g (-50.00)   [vvi-miR156g:11-31]

--------     uguugU         -A             u  -   u     ug 
        gguga      UGACAGAAG  UAGAGAGCACaga ga uga gugca  g
        |||||      |||||||||  ||||||||||||| || ||| |||||  a
        ccacu      acugucuuc  aucucucguguuu cu acu uacgu  g
ccccgacu     ------         ag             c  c   c     uu 

>vvi-MIR156i (-49.00)   [vvi-miR156i:11-31]

--------     cguugU          -             u  -   a    aag 
        gguga      UGACAGAAGA UAGAGAGCACaga ga uga augc   g
        |||||      |||||||||| ||||||||||||| || ||| ||||   a
        ccacu      acugucuucu aucucucguguuu cu acu uacg   g
ccggaauu     ------          u             c  c   c    acc 

>vvi-MIR159a (-93.20)   [vvi-miR159a:164-184]

---     u              a        uu  ga     gaugau    u    ag  g -u   u    ag         -c      au    au 
   ggguu augggagcuccuuu cgcuccag  cu  aagga      ggua ccac  cu c  ggu caug  uaccuaugg  ugcaca  auau  a
   ||||| |||||||||||||| ||||||||  ||  |||||      |||| ||||  || |  ||| ||||  |||||||||  ||||||  ||||   
   cccaa uaCUCUCGAGGGAA GUGAGGUU  gg  uuucu      ccgu ggug  ga g  cca guac  guggguauc  acgugu  ugua  g
cuu     -              -        Cc  uc     --aguu    u    aa  g cu   -    gu         aa      gu    ac 

>vvi-MIR159b (-75.20)   [vvi-miR159b:155-175]

----------gggcuugugggagcuucuuuacacuccagaac      g       a  g u        a          cugcauucucuauac 
                                          ugaaag agauacu cu c gguucaug aaaccuaugg               u
                                          |||||| ||||||| || | |||||||| ||||||||||               g
                                          auuuuc uuuguga ga g ucaaguac uuuggguauc               a
cuagccaauaCUCUCGAGGGAAGUGAGGUUCcggucuuuucu      g       a  g u        g          aaacauauguuuuaa 

>vvi-MIR159c (-92.40)   [vvi-miR159c:160-180]

--uuuu  a            ga       ua        -u   -      au  -    g    cu    g uc      c       --c   aa 
      gg guggagcuccuu  aguccaa  gagggucu  acu ggguag  ug agcu cuga  uaug a  ccacag ccuaucc   guc  u
      || ||||||||||||  |||||||  ||||||||  ||| ||||||  || |||| ||||  |||| |  |||||| |||||||   |||  g
      cc cAUCUCGAGGGA  UUAGGUU  uuccuaga  uga ccuauu  ac ucga gacu  auac u  gguguu ggauagg   cgg  g
cucucu  a            AG       Ug        uu   a      --  g    g    cu    g uc      c       uua   gg 

>vvi-MIR160a (-52.30)   [vvi-miR160a:11-33]

------     ugau    C       -    A     U   a    cuu     g 
      ggggu    cUGC UGGCUCC CUGA UGCCA Cua gaag   gucaa g
      |||||    |||| ||||||| |||| ||||| ||| ||||   ||||| u
      ccccg    gacg acugagg gacu acggu gau cuuc   caguu u
uuacaa     ----    u       a    -     u   c    ucu     g 

>vvi-MIR160b (-47.00)   [vvi-miR160b:11-33]

---aaua    u    C         GA      UC  a    c       ag 
       uugu cUGC UGGCUCCCU  AUGCCA  ua gaag uuguuaa  a
       |||| |||| |||||||||  ||||||  || |||| |||||||   
       agcg gacg acugagggg  uacggu  au cuuc aacaguu  g
uucacaa    -    a         ag      uu  c    c       gu 

>vvi-MIR160c (-58.30)   [vvi-miR160c:11-31]

---aaa     u    C       C          a      -ga   c   cu 
      ugggu gUGC UGGCUCC UGUAUGCCAc cguaga   cca ucc  u
      ||||| |||| ||||||| |||||||||| ||||||   ||| |||  u
      accca uacg accgagg gcgugcggug gcguuu   ggu agg  c
cuuacc     -    a       a          g      auc   u   cc 

>vvi-MIR160d (-49.30)   [vvi-miR160d:11-31]

--cauacuua     C       C              a   u c   cga 
          caUGC UGGCUCC UGUAUGCCAuuugc aag c acc   g
          ||||| ||||||| |||||||||||||| ||| | |||    
          guacg accgagg gcgugcgguaggcg uuc g ugg   g
uucguucuac     u       a              c   c a   uua 

>vvi-MIR160e (-51.10)   [vvi-miR160e:11-31]

----uaa     ua   C       CU          ug ag  c   c   c 
       gcaua  UGC UGGCUCC  GUAUGCCAuu  c  ag cca cgg a
       |||||  ||| |||||||  ||||||||||  |  || ||| |||  
       cguau  acg accgagg  uaugcgguag  g  uc ggu gcu c
ucuaccc     --   u       ag          gu cu  c   a   a 

>vvi-MIR162 (-41.70)   [vvi-miR162:73-93]

----    gu a          c    c       uc   c   aa     gug 
    ugaa  c cuggaugcag gguu aucgauc  uuc uga  uuguu   a
    ||||  | |||||||||| |||| |||||||  ||| |||  |||||    
    acuu  g GACCUACGUC CCAA UAGCUgg  aag acu  gacga   a
ccuc    -- c          U    A       cu   a   -a     aaa 

>vvi-MIR164a (-45.00)   [vvi-miR164a:11-31]

---   u  u           CA          Agauuugccucacuuuucccccuuuuuu 
   agc cc uguUGGAGAAG  GGGCACGUGC                            c
   ||| || |||||||||||  ||||||||||                            u
   uug gg acaaccucuuc  cucgugcacg                            u
ucc   -  u           cc          uucggacacccgccaccacccucauuuc 

>vvi-MIR164b (-38.80)   [vvi-miR164b:11-31]

--uaaa   u cU     AG           CU     aa    cac 
      cca g  GGAGA  CAGGGCACAUG  ggauc  ucag   c
      ||| |  |||||  |||||||||||  |||||  ||||   u
      ggu c  ccucu  gucccguguac  uuuag  aguc   g
auccua   u ac     cg           au     --    uag 

>vvi-MIR164c (-21.71)   [vvi-miR164c:11-31]

uugagcaagaUGGAGAAG       -  U   --uua       au   ccacaaac 
                  CAGGGCA CG GCA     cuagcuc  gca        c
                  ||||||| || |||     |||||||  |||        a
                  guuucgu gu cgu     gauugag  cgu        a
-----------------a       c  u   ucuca       cu   uuucuaau 

>vvi-MIR164d (-48.95)   [vvi-miR164d:11-31]

--a     u  a        CA            uu  caaauucuaauc  cu    a 
   agcuc ug UGGAGAAG  GGGCACGUGCAg  ca            ug  cugc c
   ||||| || ||||||||  ||||||||||||  ||            ||  ||||  
   uuggg ac accucuuc  cucgugcacguc  gu            ac  gacg g
ucc     u  a        cc            uc  cuaaucuuaaac  uu    u 

>vvi-MIR166a (-45.41)   [vvi-miR166a:100-118]

-  -g      u             a   a     cuuccuuuuucuccauuaauuccuucagu      c    uuua 
 gc  gguguu ggaaugagguuug ucc agauc                             acuggu auga    g
 ||  |||||| ||||||||||||| ||| |||||                             |||||| ||||     
 cg  ccacag CCUUACUUCGGAC AGG Ucuag                             uggcua uacu    u
u  aa      u             C   C     ----------------------------u      a    ucau 

>vvi-MIR166b (-42.41)   [vvi-miR166b:68-86]

-  -uu             uu g    cu   g  a     auaagaag 
 gu   uuugaggggaaug  g cugg  cga gc uucac        a
 ||   |||||||||||||  | ||||  ||| || |||||        a
 ca   aaacucuCCUUAC  C GACC  GCU ug aagug        g
a  uau             UU G    AG   g  g     aauauaua 

>vvi-MIR166c (-52.60)   [vvi-miR166c:129-149]

--cuauu   a        uu      cu   g      uaccuuaacuuugauccguuucucuagauccauaucaccua 
       uug ggggaaug  gucugg  cga gacacu                                         u
       ||| ||||||||  ||||||  ||| ||||||                                          
       aac CCCCUUAC  CGGACC  GCU cugugg                                         a
cgcuauu   c        UU      AG   g      uuguguacgagucauguuuauuuuuauguuauuauguauau 

>vvi-MIR166d (-50.99)   [vvi-miR166d:129-149]

--cugcu         u  uu      cu     c   c   - aucuuugauugauucaaauacuuugaucagcuucaa 
       uugagggga ug  gucugg  cgagg cac aac c                                    c
       ||||||||| ||  ||||||  ||||| ||| ||| |                                    c
       aacuCCCCU AC  CGGACC  GCUcc gug uug g                                    c
cgucacu         U  UU      AG     c   a   u uauuagucucccaccuuaacuuaacuuccucuucua 

>vvi-MIR166e (-71.80)   [vvi-miR166e:135-155]

--   uu   a        uu      cu   g         uagau        ugcguguaauugugaaugggugaucgucuc 
  gug  uug ggggaaug  gucugg  cga gacaccaac     cuaugauc                              u
  |||  ||| ||||||||  ||||||  ||| |||||||||     ||||||||                              c
  uau  aac CCCCUUAC  CGGACC  GCU cugugguug     gguacuag                              a
gu   uu   c        UU      AG   g         -----        uuucuagugaguuuuagagaggaaguuuug 

>vvi-MIR166f (-49.50)   [vvi-miR166f:69-89]

---   a    u        uu g    cu         c     ug  uu 
   ugu guug ggggaaug  g cugg  cgaggcuuu uugag  au  u
   ||| |||| ||||||||  | ||||  ||||||||| |||||  ||  a
   aca caac CCCCUUAC  C GACC  GCUucgaaa aacuc  ua  u
uuc   -    u        UU G    AG         -     ca  ug 

>vvi-MIR166g (-57.00)   [vvi-miR166g:69-89]

--aaca             uu               c    u   aa  u 
      guugaggggaaug  gucugguucgagauc uucg aug  gc c
      |||||||||||||  ||||||||||||||| |||| |||  ||  
      caacuCCCCUUAC  CGGACCAGGCUuuag aagu ugc  cg a
aaaacc             UU               u    u   ga  a 

>vvi-MIR166h (-42.50)   [vvi-miR166h:69-89]

--aac     a      c cu             c  cucgcuucaagua 
     aguug ggggaa g  gucugguucgaga ca             c
     ||||| |||||| |  ||||||||||||| ||              
     ucaac CCCCUU C  CGGACCAGGCUcu gu             a
acaac     c      A UU             a  aagucuaauacag 

>vvi-MIR167a (-112.70)   [vvi-miR167a:11-31]

--uu    a            C  C          g aacaaacaccaucucuuucuucucuaaccccaugucuggauucguccaccgauccauuauuauagaccaggccgcccguuucccauguagugaucgauaauuaggcucgggguuuucacuuuuuagugggaucuaaucc 
    ugag gguUGAAGCUGC AG AUGAUCUGgu a                                                                                                                                           u
    |||| |||||||||||| || |||||||||| |                                                                                                                                            
    acuc cuaacuucgacg uc uacuggacua u                                                                                                                                           u
acuc    a            u  -          g accuugggauagagauaccucaauccaaaaccuuaauccgauacuuaauaugggggagucgauuuaguuuuggggcaaucuuaauuuuaucuuuugucuggagugguacuauauaugguggguauguuuguagguagga 

>vvi-MIR167b (-47.69)   [vvi-miR167b:11-31]

--  a      u           G         ag        uugccca 
  ca uagcag UGAAGCUGCCA CAUGAUCUA  cuuuucug       c
  || |||||| ||||||||||| |||||||||  ||||||||        
  gu guuguc acuuugacggu guacuagau  gaaaggac       c
ag  a      c           -         ca        cucuuuc 

>vvi-MIR167c (-37.00)   [vvi-miR167c:11-31]

--  g      u   A       G        Caa   c   auac 
  ca uagcag UGA GCUGCCA CAUGAUCU   cuu ccu    a
  || |||||| ||| ||||||| ||||||||   ||| |||     
  gu guuguc acu cgauggu guacuaga   gaa gga    a
gg  a      c   c       -        cua   a   acug 

>vvi-MIR167d (-46.79)   [vvi-miR167d:11-31]

--      ua     A    C  --             ----      agg   acagaga 
  agggaa  agUGA GCUG CA  GCAUGAUCUAgcu    uuggcu   gau       a
  ||||||  ||||| |||| ||  |||||||||||||    ||||||   |||        
  uuccuu  ucacu cgac gu  cguacuggaucga    aaucga   cua       a
uc      cc     c    a  cc             uccc      -ga   gagagag 

>vvi-MIR167e (-36.06)   [vvi-miR167e:11-31]

c    ---u   u           G        Aaacuugcuucc     u 
 acua    cag UGAAGCUGCCA CAUGAUCU            cuuug g
 ||||    ||| ||||||||||| ||||||||            |||||  
 uggu    guc acuuugacggu guacuaga            gagac a
-    uguu   c           -        ---------cua     a 

>vvi-MIR168 (-72.40)   [vvi-miR168:11-31]

--g     ua     C          U     A c  c     cgcuccggcagcgccggaggcac 
   gucuc  auUCG UUGGUGCAGG CGGGA c ga uucgc                       g
   |||||  ||||| |||||||||| ||||| | || |||||                        
   cagag  uaagu aacuacguuc gcccu g cu aagcg                       c
cgg     gc     c          c     a c  u     agucguugguuagcauccggcgg 

>vvi-MIR169a (-61.10)   [vvi-miR169a:13-33]

--      g     C         UG         aa     -     -     aagagaaga   u 
  gagagu gaaug AGCCAAGGA  ACUUGCCGG  uuuau auaua gugag         ggc a
  |||||| ||||| |||||||||  |||||||||  ||||| ||||| |||||         ||| u
  cucuua uuuac ucgguuccu  ugaacgguc  aagug uauau cacuu         ucg a
uu      g     a         gu         cc     a     a     ---------   u 

>vvi-MIR169y (-73.77)   [vvi-miR169y:11-31]

--c  ug  u   A  G     U        UAc    u c   -     ucaaaaua       -----    uaccuuugaucaaaugauucaagaaacaaaagaaaagaaaggccauggcagccaucca 
   gu  uu ggU GC AAGGA GACUUGCC   agcc c uua agguu        ccgagcu     uguc                                                          u
   ||  || ||| || ||||| ||||||||   |||| | ||| |||||        |||||||     ||||                                                           
   cg  ag cca cg uuccu cugaacgg   uugg g aau ucuaa        gguucga     acag                                                          c
cuc  gu  u   -  g     -        uau    u u   a     --------       uuauc    cacaaguaagaguucuuacugagguuaaagauaucuuguacuaagaguacaacugaga 

>vvi-MIR169c (-60.00)   [vvi-miR169c:13-33]

--      ag    C         UG          --       c 
  gggagu  aaug AGCCAAGGA  ACUUGCCGGa  gaugggg a
  ||||||  |||| |||||||||  ||||||||||  |||||||  
  cucucg  uuac ucgguuccu  ugaacggccu  uugcucc u
uu      gg    a         gu          aa       u 

>vvi-MIR169d (-47.30)   [vvi-miR169d:11-31]

--    g     C       A UG         aa     -     -     aagagaaga   u 
  gagu gaaug AGCCAAG A  AUUUGCCGG  uuuau auaua gugag         ggc a
  |||| ||||| ||||||| |  |||||||||  ||||| ||||| |||||         ||| u
  cuua uuuac ucgguuc u  ugaacgguc  aagug uauau cacuu         ucg a
cu    g     a       c gu         cc     a     a     ---------   g 

>vvi-MIR169e (-49.90)   [vvi-miR169e:12-33]

---    u  cu   -        A     U     --C    ucc   g     -  auuucuuucuuuuuuccaagu 
   gucu gu  gaU AGCCAAGG UGACU GCCUG   ccua   caa ugggu ca                     a
   |||| ||  ||| |||||||| ||||| |||||   ||||   ||| ||||| ||                      
   cgga ca  uua ucgguucc acuga cggac   gggu   guu gccua gu                     g
ucu    -  uu   a        -     -     cuu    -uu   g     a  acuauauaguuuauaguuugu 

>vvi-MIR169f (-47.59)   [vvi-miR169f:13-33]

----    -u    gugC       G UG       GAaaauaauuugcucgaucguuaaugugcuucuccaguuucuauugcaauuuaugcaua 
    gaua  uaug    AGCCAAG A  ACUUGCC                                                           g
    ||||  ||||    ||||||| |  |||||||                                                            
    cuau  guac    ucgguuu u  ugaacgg                                                           g
uacu    uu    ---a       g gu       guaauaacuaaggagucaguuauagacuuaauuguucgauauuuccuauauauauaacg 

>vvi-MIR169g (-52.20)   [vvi-miR169g:13-33]

--     uaug   C         UG        A  c  uac    ccau    cuu    c 
  gaaag    gug AGCCAAGGA  ACUUGCCG cu uc   uuag    cugc   ucuc a
  |||||    ||| |||||||||  |||||||| || ||   ||||    ||||   ||||  
  cuuuc    uac ucgguuucu  ugaacggc ga ag   aguc    gacg   ggag a
gu     uucg   a         gu        c  -  --u    --au    uuc    g 

>vvi-MIR169j (-63.90)   [vvi-miR169j:13-33]

--          u C         UG         aauu   auauaga   -   u     aau 
  gagaguggag g AGCCAAGGA  ACUUGCCGG    cac       gug gaa gaggc   a
  |||||||||| | |||||||||  |||||||||    |||       ||| ||| |||||   g
  cucucgcuuu c ucgguuccu  uggacgguc    gug       uac cuu cuccg   a
uu          c a         gu         -ccu   ------g   u   -     gcc 

>vvi-MIR169k (-61.10)   [vvi-miR169k:13-33]

--          u C         UG         aauucacauauagaguggaaugaggc 
  gagaguggag g AGCCAAGGA  ACUUGCCGG                          a
  |||||||||| | |||||||||  |||||||||                           
  cucuugcuuu c ucgguuccu  uggacgguc                          a
uu          c a         gu         ccugugguacccuucuccggccggag 

>vvi-MIR169m (-46.20)   [vvi-miR169m:12-32]

--  a      gu     AA     A        cagcugcagcaaggcau 
  ag guggaa  GAGCC  GGAUG CUUGCCGG                 u
  || ||||||  |||||  ||||| ||||||||                 a
  uc cacuuu  cucgg  ccuac gaacgguc                 a
uc  c      gu     ag     -        aauaccggucaauuugg 

>vvi-MIR169p (-45.20)   [vvi-miR169p:12-32]

--  u       u     AA     A        cagcugcagcaaggcau 
  ag guggaau GAGCC  GGAUG CUUGCCGG                 u
  || ||||||| |||||  ||||| ||||||||                 a
  uc cacuuug cucgg  ccuac gaacgguc                 a
uc  c       u     ag     -        aauaucggucaauuugg 

>vvi-MIR169r (-56.10)   [vvi-miR169r:11-31]

--     g             GAU         -a       uu  a      aug 
  agggu gaauUGAGUCAAG   GACUUGCCG  uauauau  gc gaaggc   c
  ||||| |||||||||||||   |||||||||  |||||||  || ||||||    
  ucccg uuugacucaguuc   uugaacggc  augugua  cg uuuucg   a
uc     g             -ag         ca       -u  a      ggg 

>vvi-MIR169s (-40.50)   [vvi-miR169s:13-33]

--  a  ug  u  C     A   UG         cacuuggcauuagg 
  ga ag  ga ug AGCCA GGA  ACUUGCCGG              c
  || ||  || || ||||| |||  |||||||||              a
  cu uc  cu ac ucggu cuu  ugaacggcc              c
uu  c  gu  u  a     c   gu         cuucuacuagcuac 

>vvi-MIR169t (-53.10)   [vvi-miR169t:11-31]

--     g    C        GAU         -a       uu  g     a   g 
  agggu gaau GAGUCAAG   GACUUGCCG  uauauau  gc gaagg cuu c
  ||||| |||| ||||||||   |||||||||  |||||||  || ||||| |||  
  ucccg uuug cucaguuc   uugaacggc  augugua  cg uuucc ggg a
uc     g    a        -ag         ca       -u  a     -   u 

>vvi-MIR169u (-52.80)   [vvi-miR169u:11-31]

--     g    U        GAU         -uu      uu  a     g ac 
  agggu gaau GAGUCAAG   GACUUGCCG   auauau  gc gaagg c  g
  ||||| |||| ||||||||   |||||||||   ||||||  || ||||| |  c
  ucccg uuug cucaguuc   uugaacggc   ugugua  cg uuucc g  a
uc     g    u        -ag         cau      -u  a     g gg 

>vvi-MIR171a (-47.80)   [vvi-miR171a:68-88]

ug   gga             g            aacc    au    a 
  gug   agcgugauguugg acggcucaauca    aaag  cuca u
  |||   ||||||||||||| ||||||||||||    ||||  |||| g
  cau   uuguaCUAUAACC UGCCGAGUUAGU    uuuc  gagu g
--   aac             G            cuaa    cu    u 

>vvi-MIR171b (-46.90)   [vvi-miR171b:69-89]

-- gg                 c       u  ag          -  ga 
  u  ggggagguauuggcgug cucaauu aa  acaugguuag au  a
  |  ||||||||||||||||| ||||||| ||  |||||||||| ||   
  g  uuccuCUAUAACUGCGC GAGUUAG uu  uguaccgauu ua  g
ac uu                 C       U  ag          a  ga 

>vvi-MIR171c (-48.00)   [vvi-miR171c:70-90]

u    ---u    g        ug         a     g   u     c  u 
 ggua    uacg gauauugg  cgguucaau agaaa cag gcucg aa c
 ||||    |||| ||||||||  ||||||||| ||||| ||| ||||| ||  
 ucgu    gugc CUAUAACC  GCCGAGUUA Uuuuu guc ugagu uu u
-    uacu    a        GU         G     g   u     -  u 

>vvi-MIR171d (-38.60)   [vvi-miR171d:67-87]

--uagauac   a       a               a   u u     aa 
         acg gauauug uacgguucaauuaga agc g guucu  g
         ||| ||||||| ||||||||||||||| ||| | |||||   
         ugc CUAUAAC GUGCCGAGUUAGUuu uug c caaga  u
ucuucaucc   a       C               g   u u     au 

>vvi-MIR171e (-44.70)   [vvi-miR171e:70-90]

------       aagc          a         c  a  -  -ga      aa 
      ggaaagu    gauguuggug gguucaauc ga ga cg   uuuacg  g
      |||||||    |||||||||| ||||||||| || || ||   ||||||   
      ucuuuca    CUAUAACCGC CCGAGUUAG cu cu gc   aaaugc  a
gaaucg       ----          G         U  -  a  aag      cg 

>vvi-MIR171f (-45.90)   [vvi-miR171f:73-93]

--uugaa     c          a            a    ga   a   uu 
       gaaag gauguuggug gguucaaucuga gauu  uuu ugc  g
       ||||| |||||||||| |||||||||||| ||||  ||| |||   
       uuuUC CUAUAACCGC CCGAGUUagacu cuag  aaa aug  a
cgguguc     A          G            -    uc   a   ua 

>vvi-MIR171h (-47.30)   [vvi-miR171h:66-86]

--uuuc   a                    u   ug   u   c   a 
      acg gauguuggugcgguucaacc aac  uag guc aug a
      ||| |||||||||||||||||||| |||  ||| ||| |||  
      ugc CUAUAACCGCGCCGAGUUGG uug  guc cag uau u
ucuauc   c                    U   ua   u   c   g 

>vvi-MIR171i (-44.90)   [vvi-miR171i:69-89]

--gaa   g   gg        a            a  c   ucu        
     gaa gug  gauguugg auggcucaauca au aaa   cccaagg 
     ||| |||  |||||||| |||||||||||| || |||   |||||| g
     cuu uac  CUAUAACC UGCCGAGUUAGU ua uuu   ggguuuu 
cuuca   g   ua        G            c  a   ccu        

>vvi-MIR172a (-38.30)   [vvi-miR172a:80-100]

--ua    - g   c                ucauccuugaaaaguuuggcagaga 
    uugc c aug agcaucaucaagauuc                         u
    |||| | ||| ||||||||||||||||                          
    aacg g UAC UCGUAGUAGUUCUAAG                         a
aaca    c -   A                Uguacguuuacgugccaccacuaca 

>vvi-MIR172b (-49.80)   [vvi-miR172b:88-108]

--ua    c a  c                u  accccaaaacuugaggcagcgaagau 
    uugc g ug agcaucaucaagauuc ca                          g
    |||| | || |||||||||||||||| ||                           
    aacg c AC UCGUAGUAGUUCUAAG gu                          g
aaca    u C  A                U  acgcuuucgggccgcgccgucgcuac 

>vvi-MIR172c (-57.90)   [vvi-miR172c:108-128]

--gu    g a  g                a  a  auu    cu  gug  ug   -gu  u  u    u 
    uugc g ug agcaucaucaagauuc ca gu   gaga  ca   cg  gug   ga gg gacu u
    |||| | || |||||||||||||||| || ||   ||||  ||   ||  |||   || || |||| u
    aacg c AC UCGUAGUAGUUCUAAG gu ua   uucu  gu   gc  cac   cu cc cugg g
aaau    g G  G                G  g  -gu    cg  --a  cu   auc  u  -    u 

>vvi-MIR172d (-52.22)   [vvi-miR172d:77-99]

--guua  u                     a  c -   -uggaag     u     
      gc gaugcagcaucaucaagauuc ca c caa       ggcag gaug 
      || ||||||||||||||||||||| || | |||       ||||| ||| c
      cg uUACGUCGUAGUAGUUCUAAG GU g guu       ccguc cuaa 
aaguga  c                     A  a a   uuagaaa     u     

>vvi-MIR319b (-102.82)   [vvi-miR319b:163-183]

u      ---gaa                   uc  a       ucaa      u   ug   g   ac      cu       cu    a   aggcc 
 guggaa      ggagcucucuuuaguccag  cg gacagcu    ggcuga acg  gcu cug  ucguug  ucaagaa  cauc cau     u
 ||||||      |||||||||||||||||||  || |||||||    |||||| |||  ||| |||  ||||||  |||||||  |||| |||     g
 caccuu      CCUCGAGGGAAGUCAGGUU  gc cugucgg    uugacu ugc  cga gac  agcaac  aguuuuu  guag gua     g
a      auguUC                   cu  a       --ua      -   gu   g   gu      cu       ug    -   gaaaa 

>vvi-MIR319c (-83.40)   [vvi-miR319c:151-171]

--uua  u     a     uu          cu      ug  ag       g    a -  g   ac       uc  aa     u  uaa 
     ca ugaag gagcu  cuucagucca  cauggg  gc  uaggauu aauu g cu ccg  ucauuca  ca  uacug gu   g
     || ||||| |||||  ||||||||||  ||||||  ||  ||||||| |||| | || |||  |||||||  ||  ||||| ||    
     gu acuUC CUCGA  GAAGUCAGGU  gugucc  cg  auucuag uuaa c ga ggc  aguaagu  gu  augac ca   g
cuaac  c     C     GG          Uc      cu  -a       g    a a  g   gu       ua  aa     c  uca 

>vvi-MIR319f (-88.70)   [vvi-miR319f:162-182]

-----     uuu   a                 cu      ug  uu      uu  a   g  g   ac        u  aa        aaug   au 
     agugg   aag gagcuuccuucagucca  caugga  gg  aggggu  gg uua cu ccg  ucauucau ca  cacaguag    gaa  g
     |||||   ||| |||||||||||||||||  ||||||  ||  ||||||  || ||| || |||  |||||||| ||  ||||||||    |||   
     ucauc   uUC CUCGAGGGAAGUCAGGU  gugucu  uc  uuccua  uu aau ga ggc  aguaagug gu  gugucauc    uuu  g
uuuug     ---   C                 Uc      gu  uu      cu  a   g  g   gu        u  aa        ---a   ga 

>vvi-MIR319g (-96.00)   [vvi-miR319g:192-212]

-gaaca   -gaa                   aa  a    u   g -    -cc  -a   g    c       cuu     u     ------u  u    u  au  -       
      gcu    gagcuccuuuuaguccaau  ag gggc gag g gcgg   ag  gcu ccau ucaugca   ggcua gcuua       uc uuuc ca  ca auucgg 
      |||    |||||||||||||||||||  || |||| ||| | ||||   ||  ||| |||| |||||||   ||||| |||||       || |||| ||  || ||||| u
      cgg    CUCGAGGGAAGUCAGGUUa  uc cccg uuc c cgcc   uc  cga ggua aguacgu   ccgau ugaau       ag gagg gu  gu ugagcu 
ucuaga   gACC                   -c  a    u   g a    ucc  aa   g    c       agu     u     cguaaac  u    u  cg  a       

>vvi-MIR390 (-62.30)   [vvi-miR390:11-31]

--         u          G             --a  --c       aaa   uugu      -    a 
  agaaucugu AAGCUCAGGA GGAUAGCGCCaug   gc   augauga   uga    ugaguu gaaa u
  ||||||||| |||||||||| |||||||||||||   ||   |||||||   |||    |||||| ||||  
  ucuugggca uuugaguccu ucuaucgcggugu   ug   uacuacu   guu    guucga cuuu u
cu         c          a             gug  uuu       -gg   uuuu      u    u 

>vvi-MIR393b (-45.70)   [vvi-miR393b:11-31]

--        c            C    U     c   cu u 
  ggaggagg aUCCAAAGGGAU GCAU GAUCc aaa  c c
  |||||||| |||||||||||| |||| ||||| |||  | c
  uuuccucc uagguuucccua cgua cuagg uuu  g a
gg        u            u    -     -   cu u 

>vvi-MIR394a (-51.01)   [vvi-miR394a:11-32]

--                 U   U         Ugcacaucaug 
  cagagccauuUUGGCAU CUG CCACCUCCA           g
  ||||||||||||||||| ||| |||||||||           g
  gucucggugaaaccgua gac gguggaggu           u
au                 c   c         uuucuuauauc 

>vvi-MIR394b (-42.60)   [vvi-miR394b:11-30]

-         -a      U C           -  ucucuu     uc 
 acagaguuu  UUGGCA U UGUCCACCUCC ca      gaaaa  u
 |||||||||  |||||| | ||||||||||| ||      |||||   
 ugucucgaa  aaccgu a acggguggagg gu      cuuuu  c
u         cc      c u           u  --cucu     cu 

>vvi-MIR395a (-40.86)   [vvi-miR395a:62-82]

--gucc  ua         ug u       c       - uucgcu 
      cc  gaguucccu  a cacuuca uagggag c      a
      ||  |||||||||  | ||||||| ||||||| |      g
      gg  CUCAAGGGG  U GUGAAGU auccuuc g      u
agccau  uc         GU U       C       a uaauuu 

>vvi-MIR395b (-34.90)   [vvi-miR395b:60-80]

--gucc  ua          uac       ---cug   auc   uc 
      cc  gaguuccccu   cacuuca      ggg   uuc  u
      ||  ||||||||||   |||||||      |||   |||   
      gg  CUCAAGGGGG   GUGAAGU      ucc   aag  a
uaccgu  uc          UUU       Caugca   -gu   ua 

>vvi-MIR395c (-37.80)   [vvi-miR395c:62-82]

--gucc  ua         ug c       c      ccu  uc  g 
      cc  gaguucccu  a cacuuca ugggga   uc  ua u
      ||  |||||||||  | ||||||| ||||||   ||  ||  
      gg  CUCAAGGGG  U GUGAAGU auccuu   ag  au u
uaccgu  uc         GU U       C      --c  ua  a 

>vvi-MIR395d (-40.80)   [vvi-miR395d:56-76]

--gccc  ua         ug c       u      -  uuc 
      cc  gaguucccc  a cacuuca ugggga uc   u
      ||  |||||||||  | ||||||| |||||| ||   c
      gg  CUCAAGGGG  U GUGAAGU auccuu ag   u
uacugu  uc         GU U       C      c  uaa 

>vvi-MIR395e (-37.30)   [vvi-miR395e:62-82]

--cucc  ua         ug c       c      ccu  ucuaa 
      cc  gaguucccu  a cacuuca ugggga   uc     u
      ||  |||||||||  | ||||||| ||||||   ||      
      gg  CUCAAGGGG  U GUGAAGU auccuu   ag     u
uaccgu  uc         GU U       C      --c  uaaua 

>vvi-MIR395f (-44.20)   [vvi-miR395f:56-76]

-- u  -  ua         ug c       c      -  uuc 
  g ac cc  gaguucccc  a cacuuca ugggga uc   u
  | || ||  |||||||||  | ||||||| |||||| ||   c
  c ug gg  CUCAAGGGG  U GUGAAGU acccuu ag   u
ua -  u  uc         GU U       C      c  uaa 

>vvi-MIR395g (-44.40)   [vvi-miR395g:56-76]

-- u c  ua         ug         u       ccuua 
  g c cc  gaguucccc  agcacuuca uggggau     g
  | | ||  |||||||||  ||||||||| |||||||      
  c g gg  CUCAAGGGG  UUGUGAAGU auccuua     u
ua u u  cc         GU         C       acuuu 

>vvi-MIR395h (-37.50)   [vvi-miR395h:62-82]

--- uc  cua         ug c       c      ccu  ucuaa 
   g  cc   gaguucccu  a cacuuca ugggga   uc     u
   |  ||   |||||||||  | ||||||| ||||||   ||      
   c  gg   CUCAAGGGG  U GUGAAGU auccuu   ag     u
uau gu  -uc         GU U       C      --c  uaaua 

>vvi-MIR395i (-40.80)   [vvi-miR395i:56-76]

--gccc  ua         ug c       c      -  uuc 
      cc  gaguucccc  a cacuuca ugggga uc   u
      ||  |||||||||  | ||||||| |||||| ||   g
      gg  CUCAAGGGG  U GUGAAGU auccuu ag   u
uacugu  uc         GU U       C      c  uaa 

>vvi-MIR395j (-40.80)   [vvi-miR395j:56-76]

--gccc  ua         ug c       c      -  uuc 
      cc  gaguucccc  a cacuuca ugggga uc   u
      ||  |||||||||  | ||||||| |||||| ||   u
      gg  CUCAAGGGG  U GUGAAGU auccuu ag   u
uacugu  uc         GU U       C      c  uaa 

>vvi-MIR395k (-37.30)   [vvi-miR395k:61-81]

----ucc  ua         ug c       c      ccu  ucuaa 
       cc  gaguucccu  a cacuuca ugggga   uc     u
       ||  |||||||||  | ||||||| ||||||   ||      
       gg  CUCAAGGGG  U GUGAAGU auccuu   ag     u
uuaccgu  uc         GU U       C      --c  uaaua 

>vvi-MIR395l (-41.10)   [vvi-miR395l:57-77]

--gccc  ua         ug c       c     ga  uuc 
      cc  gaguucccc  a cacuuca ugggg  uc   u
      ||  |||||||||  | ||||||| |||||  ||   g
      gg  CUCAAGGGG  U GUGAAGU auccu  ag   u
uacugu  uc         GU U       C     uc  uaa 

>vvi-MIR395m (-42.00)   [vvi-miR395m:62-82]

--gucc  ua         ug         c      ccu  uc  g 
      cc  gaguucccu  aacacuuca ugggga   uc  ua u
      ||  |||||||||  ||||||||| ||||||   ||  ||  
      gg  CUCAAGGGG  UUGUGAAGU auccuu   ag  au u
uaccgu  uc         GU         C      --c  ua  a 

>vvi-MIR396a (-51.30)   [vvi-miR396a:14-34]

ucc       cu                  A  A  -    -  u  a   guuug    uc 
   ugucaug  uUUCCACAGCUUUCUUGA CU cu uuuc ca cu ccu     auga  u
   |||||||  |||||||||||||||||| || || |||| || || |||     ||||   
   acgguac  gagggugucgaaagaacu ga ga aaag gu ga gga     uacu  u
--a       ag                  c  a  u    u  -  -   ----a    uc 

>vvi-MIR396b (-52.67)   [vvi-miR396b:14-33]

uccu      c                        uucucccuguuu     ucuccuac 
    gccaug uuUUCCACAGCUUUCUUGAACUuc            ggugg        g
    |||||| ||||||||||||||||||||||||            |||||         
    cgguac aaagggugucgaaagaacuugaag            ucacc        u
--uu      c                        ------------     uacccauu 

>vvi-MIR396d (-47.80)   [vvi-miR396d:11-31]

--cuuu    uc            C          --uuuuu  --    acu       uu 
      guau  UUCCACAGCUUU UUGAACUGca       ca  gacu   ggugugu  u
      ||||  |||||||||||| ||||||||||       ||  ||||   |||||||   
      caua  agggugucgaaa aacuuggcgu       gu  cuga   ucacgua  u
gacaac    ga            u          ugacaau  ua    aac       ug 

>vvi-MIR398a (-55.60)   [vvi-miR398a:73-93]

--aca         a   gc            cg u           c  caa 
     ccccaaggg gug  accugagaacac  g uguguuggcug gc   g
     ||||||||| |||  ||||||||||||  | ||||||||||| ||    
     gggguUUCC CAC  UGGACUCUUGUG  u acguaaucgau cg   c
accac         C   --            Uu u           -  ucu 

>vvi-MIR399a (-51.32)   [vvi-miR399a:67-87]

--ga         u ug                 -auauca   augga 
    gaauaacag g  auucuccuuuggcagag       cgc     g
    ||||||||| |  |||||||||||||||||       |||      
    cuuauuGUC C  UAAGAGGAAACCGUcuc       gcg     u
uuaa         C GU                 gucgaug   gaaga 

>vvi-MIR399b (-48.22)   [vvi-miR399b:87-107]

--au  a          c     uc        -   ---------ug  uc   -ua    aa 
    ca ucauagggca cucuu  uuggcagg cac           gc  cua   uaug  u
    || |||||||||| |||||  |||||||| |||           ||  |||   ||||   
    gu aguGUCCCGU GAGAG  AACCGUuc gug           cg  gau   auac  a
cuuc  c          U     GA        a   uagaaaaauga  uc   ucg    au 

>vvi-MIR399e (-42.10)   [vvi-miR399e:82-102]

--gcauauuaca         a            ca  -    ua    caca  caa 
            gggcaaauu ucuuuuggcagg  gc cacu  gaga    gc   g
            ||||||||| ||||||||||||  || ||||  ||||    ||    
            CCCGUUUAG AGGAAACCGUcu  cg guga  uucu    cg   c
ucuucuuaacGG         -            cc  u    ug    --ua  uac 

>vvi-MIR399g (-48.80)   [vvi-miR399g:83-103]

--a       cu      ua    a        u   cacucggcugaccgcgguu 
   ugaauug  gggcaa  cucc uuggcagu ggc                   g
   |||||||  ||||||  |||| |||||||| |||                   a
   acuuaac  CCCGUU  GAGG AACCGUca ucg                   c
ucg       UC      UA    A        c   aaucagacgaugaacacuu 

>vvi-MIR399h (-41.10)   [vvi-miR399h:60-80]

--ag    aa   u     c              -   -uc    a 
    gaau  cag gcaau cuccuuuggcagaa aga   augc c
    ||||  ||| ||||| |||||||||||||| |||   ||||  
    cuua  GUC CGUUA GAGGAAACCGUuuu ucu   uacg a
cucg    cc   C     A              g   uca    u 

>vvi-MIR408 (-51.90)   [vvi-miR408:77-97]

a    ga   --      c              a    a uauu     aagaa 
 agag  aga  cgggga gagguagugcaugg ugga c    aacag     u
 ||||  |||  |||||| |||||||||||||| |||| |    |||||      
 ucuc  ucu  GUCCCU CUCCGUCACGUAcc aucu g    uuguc     g
c    ug   CG      U              c    c -uuu     gaauu 

>vvi-MIR479 (-38.56)   [vvi-miR479:11-32]

---   g   u  U                  A    cuuucauucau 
   gua aca gg GUGGUAUUGGUUCGGCUC UCuu           u
   ||| ||| || |||||||||||||||||| ||||            
   cgu ugu uc cacuauaaccaagccgag agaa           u
cuu   a   -  u                  c    acucggcuacu 

>vvi-MIR535a (-51.40)   [vvi-miR535a:11-31]

--ugua    cu     A                a  ca   u     cg 
      auug  UGACA CGAGAGAGAGCACGCu gu  gca ucaug  a
      ||||  ||||| |||||||||||||||| ||  ||| |||||  g
      uaac  acugu gcucucucucgugcgg ca  ugu aguac  g
cucuuc    au     c                a  ug   c     aa 

>vvi-MIR535b (-51.40)   [vvi-miR535b:11-31]

--ugua    cu     A                a  ca   u     cg 
      auug  UGACA CGAGAGAGAGCACGCu gu  gca ucaug  a
      ||||  ||||| |||||||||||||||| ||  ||| |||||  g
      uaac  acugu gcucucucucgugcgg ca  ugu aguac  g
cucuuc    au     c                a  ug   c     aa 

>vvi-MIR535c (-47.80)   [vvi-miR535c:11-31]

--ugua    cu     A   G            a  cu   u     cg 
      auug  UGACA CGA AGAGAGCACGCu gu  gca ucaug  a
      ||||  ||||| ||| |||||||||||| ||  ||| |||||  g
      uaac  acugu gcu ucucucgugcgg ca  ugu aguac  g
cucuuc    au     c   g            a  ug   c     aa 

>age-mir-506 (-31.70)   [age-miR-506:57-77]

--------ca  cuc      g   c          a    uuac    a     u 
          cg   uguaua uac uuauucagga ggug    ccau cagau a
          ||   |||||| ||| |||||||||| ||||    |||| |||||  
          gc   acgugu aug GAUGAGUCUU CCGC    GGUA guuua a
uuuacaccag  aca      a   A          C    ----    A     u 

>age-mir-507 (-36.00)   [age-miR-507:56-76]

     --g      g  c      uc  uu       uu  u  ggc 
gugcu   ugugua ug uucacu  aa  agugcca  ca gu   u
|||||   |||||| || ||||||  ||  |||||||  || ||    
caugg   acacgu au AAGUGA  UU  UCACGGU  gu ua   a
     aca      a  a      GA  UU       UU  u  aag 

>age-mir-508 (-34.59)   [age-miR-508:50-72]

u  -     g   c      c        u     acauaaa 
 ga gugua ugc cuacuc agagggug caauc       c
 || ||||| ||| |||||| |||||||| |||||        
 cu cacau aug GAUGAG UUUUCCAC GUUAG       u
a  a     a   A      U        U     Cacgaaa 

>age-mir-509a (-29.70)   [age-miR-509a:55-77]

a   c   -    gg   c    -      ga   g    ug auaua 
 aug ugu gugu  uac cugc ugcaga  gug caau  u     a
 ||| ||| ||||  ||| |||| ||||||  ||| ||||  |      
 uac aca uacg  aug GAUG ACGUCU  CAC GUUA  a     u
g   -   g    ua   A    G      -G   A    GU aaaau 

>age-mir-509b (-34.00)   [age-miR-509b:55-77]

    c   -    gg   c   -       ga   g       auaua 
caug ugu augu  uac cug cugcaga  gug caaucgu     a
|||| ||| ||||  ||| ||| |||||||  ||| |||||||      
guac aca uacg  aug GAU GACGUCU  CAC GUUAGUa     u
    -   g    ua   A   A       -G   A       aaaau 

>age-mir-510 (-48.70)   [age-miR-510:21-43]

--gc      -      g          -     A  AG       G aua 
    uauaug cgugug ugcucUACUC CAGAG GU  CAAUCAC u   a
    |||||| |||||| |||||||||| ||||| ||  ||||||| |    
    auguac guacac augagaugag gucuc ca  guuagug a   u
cauc      a      a          a     -  aa       g aau 

>age-mir-513b (-39.00)   [age-miR-513b:16-37]

-ca  -     g   c    A       C  U         gga 
   gc gugca ugc cUUC CAAGGAG UG CAUUCAUgu   c
   || ||||| ||| |||| ||||||| || |||||||||    
   cg caugu aug gaag guucuuc gc guaaguaca   a
gua  a     a   a    a       c  u         aaa 

>age-mir-513c-1 (-42.80)   [age-miR-513c:16-37]

-ca  -     g   c               U   U     gaa 
   gc gugca ugc uUUCUCAAGAAGGUG CAU CAUgu   c
   || ||||| ||| ||||||||||||||| ||| |||||    
   cg caugu aug gaagaguucuuccac gua guaua   u
gua  a     a   a               u   -     aaa 

>age-mir-513a-1 (-34.70)   [age-miR-513a:16-37]

-ca  -     g   c    A         -  C    A   gga 
   gc gugca ugc cUUC CAAGGAGGU GU AUUC Ugu   c
   || ||||| ||| |||| ||||||||| || |||| |||    
   cg caugu aug gaag guucuuccg ca uaag aca   u
gua  a     a   a    a         u  -    c   aaa 

>age-mir-513d (-37.20)   [age-miR-513d:20-41]

     agc     g   c    A   C      U         aaa 
cauuc   gugca ugc cUUC CAA GAGGUG CAUUUAUgu   c
|||||   ||||| ||| |||| ||| |||||| |||||||||    
guagg   caugu aug gaag guu uuccac guaaauaca   u
     --a     a   a    a   u      u         aag 

>age-mir-513e-2 (-38.00)   [age-miR-513e:20-40]

cauccag     a    ---- -    -          C         gaa 
       caugc gugc    c cUUA CAAGAAGGUG CAUUCAUgu   c
       ||||| ||||    | |||| |||||||||| |||||||||    
       guacg caug    g gaau guucuuccgc guaaguaua   u
-------     g    uaau a    a          c         aaa 

>age-mir-513a-2 (-40.70)   [age-miR-513a:16-37]

-ca  -     g   c U  A          U         gga 
   gc gugca ugc c UC CAAGGAGGUG CAUUCAUgu   c
   || ||||| ||| | || |||||||||| |||||||||    
   cg caugu aug g ag guucuuccgc guaaguaca   a
gua  a     a   a u  a          c         aaa 

>age-mir-513c-2 (-47.10)   [age-miR-513c:16-37]

-ca  -     g   c               U         gaa 
   gc gugca ugc uUUCUCAAGAAGGUG CAUUCAUgu   c
   || ||||| ||| ||||||||||||||| |||||||||    
   cg caugu aug gaagaguucuuccgc guaaguaua   u
gua  a     a   a               u         aaa 

>age-mir-514 (-37.80)   [age-miR-514:57-76]

caa     u   gg   c      cg              -ug  u 
   guugu ugu  uac cuacuc  aagagugucaauca   ug a
   ||||| |||  ||| ||||||  ||||||||||||||   || a
   cagca aca  aug GAUGAG  UUUUCACAGUUAgu   ac u
gua     u   --   a      UG              uua  u 

>ssy-mir-506 (-32.60)   [ssy-miR-506:57-77]

     cua  ug  g   c          a     ua    a     u 
ccaug   ug  ua ugc uuauucagga ggugu  cuua uagau a
|||||   ||  || ||| |||||||||| |||||  |||| |||||  
gguac   ac  gu aug GAUGAGUCUU CCACG  GAAU guuua a
     --a  gu  a   A          C     --    -     u 

>ssy-mir-507 (-34.90)   [ssy-miR-507:56-76]

     --g      g  c          uaa    c uu     guc 
gugcu   ugugua ug uucacuucaa   gugc a  caugu   u
|||||   |||||| || ||||||||||   |||| |  |||||    
caugg   acacgu au AAGUGAGGUU   CACG U  guaua   a
     aca      a  a          UUC    U UU     aag 

>ssy-mir-508 (-34.50)   [ssy-miR-508:50-72]

u  -     g   c      c       gu  c   c  aaa 
 ga gugua ugc cuacuc agagggc  ca uca gu   c
 || ||||| ||| |||||| |||||||  || ||| ||    
 cu cacau aug GAUGAG UUUCCCG  GU AGU ca   u
a  a     a   A      U       AU  U   a  caa 

>ssy-mir-509a (-41.20)   [ssy-miR-509a:55-77]

    c   -   ug    c     -      a   g       --g  u 
caug ugu gug  guac cuacu acaggc gug caaucau   ua a
|||| ||| |||  |||| ||||| |||||| ||| |||||||   ||  
guac aca uac  caug GAUGG UGUCUG CAU GUUAGUa   au a
    -   g   gu    A     G      -   G       aaa  u 

>ssy-mir-509b (-41.50)   [ssy-miR-509b:55-77]

    c   -   ug    c    -       a   g       --g  u 
caug ugu gug  guac cuac ugcaggc gug caaucau   ua a
|||| ||| |||  |||| |||| ||||||| ||| |||||||   ||  
guac aca uac  caug GAUG AUGUCUG CAU GUUAGUa   au a
    -   g   gu    A    G       -   G       aaa  u 

>ssy-mir-510 (-40.50)   [ssy-miR-510:22-44]

cu   ug   -     g   c      -C    A  GG         aua 
  gug  ugu gugug ugu cUACUC  GGAG GU  CAAUCACAu   a
  |||  ||| ||||| ||| ||||||  |||| ||  |||||||||    
  cau  aca uacac aua ggugag  ucuc ca  guuagugug   u
-u   gu   g     a   a      aa    -  aa         aau 

>ssy-mir-513c (-25.90)   [ssy-miR-513c:13-34]

u     g   c    C  AG      UC     Cg gaa 
 guaca ugc uUUC CA  GAGGUG  AUUUA  u   c
 ||||| ||| |||| ||  ||||||  |||||  |    
 caugu aug gaag gu  uuccac  uaaau  a   u
a     a   a    a  cu      uu     au aaa 

>ssy-mir-513b-1 (-33.40)   [ssy-miR-513b:15-36]

ag      g   c    A         GU         gaa 
  uguaca ugc uUUC CAAGGAGGU  CAUUUAUgu   c
  |||||| ||| |||| |||||||||  |||||||||    
  acaugu aug gaag guucuucca  guaaauaua   u
--      a   a    a         gu         aaa 

>ssy-mir-513a (-33.50)   [ssy-miR-513a:13-34]

u     g   c    A   GG     UC        gaa 
 gugca ugc uUUC CAG  AGGUG  AUUUAUgu   c
 ||||| ||| |||| |||  |||||  ||||||||    
 caugu aug gaag guc  uccac  uaaauaua   u
a     a   a    a   uu     uu        aaa 

>ssy-mir-513b-2 (-37.70)   [ssy-miR-513b:13-34]

u     g        A          UC        gaa 
 gugca ugccuUUC CAAGGAGGUG  AUUUAUgu   c
 ||||| |||||||| ||||||||||  ||||||||    
 caugu augggaag guuuuuccac  uaaauaua   u
a     a        a          uu        aaa 

>ssy-mir-514 (-33.20)   [ssy-miR-514:56-75]

    u   -    g   c      -    u    a      u  gua 
augu guc ugug uac cuacuc ugga agug caauca gu   a
|||| ||| |||| ||| |||||| |||| |||| |||||| ||    
ugca cag acgc aug GAUGAG GUCU UCAC GUUAgu ua   u
    -   u    a   a      U    -    A      u  aau 

>mml-mir-506 (-32.80)   [mml-miR-506:64-84]

------      --g   -      guguagugcc          a     --   uu     a 
      ugucua   ugc cguuau          uuauucagga ggugu  uac  aauau u
      ||||||   ||| ||||||          |||||||||| |||||  |||  |||||  
      acaggu   acg guaaug          GAUGAGUCUU CCACG  AUg  uuaua u
uuuacu      aca   u      ---------A          C     GA   -u     a 

>mml-mir-507 (-34.90)   [mml-miR-507:56-76]

     --g      g  c          uaa    c uu     guc 
gugcu   ugugua ug uucacuucaa   gugc a  caugu   u
|||||   |||||| || ||||||||||   |||| |  |||||    
caugg   acacgu au AAGUGAGGUU   CACG U  guaua   a
     aca      a  a          UUC    U UU     aag 

>mml-mir-508 (-36.24)   [mml-miR-508:50-72]

u  -    cg          c        u  c   cauaaa 
 ga gugu  ugcucuacuc agagggcg ca uca      c
 || ||||  |||||||||| |||||||| || |||       
 cu caca  augAGAUGAG UUUUCCGC GU AGU      u
a  a    ua          U        U  U   acaaaa 

>mml-mir-509-1 (-30.80)   [mml-miR-509:55-77]

     u  -    gg   c   - ug      g  g       --g  u 
caugu gu gugu  uac cua c  caggca ug caauuau   ua a
||||| || ||||  ||| ||| |  |||||| || |||||||   ||  
guaca ca uacg  aug GAU G  GUCUGU AU GUUAGUa   au g
     -  g    ua   A   G GU      -  G       aaa  u 

>mml-mir-509-2 (-33.90)   [mml-miR-509:55-77]

    c   -    gg   c     -       g  g       --g  u 
caug ugu gugu  uac cuacu acaggca ug caaucau   ua a
|||| ||| ||||  ||| ||||| ||||||| || |||||||   ||  
guac aca uacg  aug GAUGG UGUCUGU AU GUUAGUa   au g
    -   g    ua   A     G       -  G       aaa  u 

>mml-mir-510 (-37.80)   [mml-miR-510:22-44]

ugc  ug   -     g  uc      -C    A  GG         aua 
   ug  ugu gugug ua  cUACUC  GGAG GU  CAAUCACAu   a
   ||  ||| ||||| ||  ||||||  |||| ||  |||||||||    
   au  aca uacac au  ggugag  ucuc ca  guuagugug   u
-uc  gu   g     a  ga      aa    -  aa         aau 

>mml-mir-513b-1 (-31.60)   [mml-miR-513b:13-34]

-uu    g   -     A          U       -  ga 
   uaca ugc cuUUC CAAGGAGGUG CAUUUAU gu  a
   |||| ||| ||||| |||||||||| ||||||| ||  c
   augu aug gaagg guuuuuccac guaaaua ca  u
aac    a   a     -          u       u  aa 

>mml-mir-513b-2 (-35.40)   [mml-miR-513b:14-35]

g      g   -     A          U       -  ga 
 ugugca ugc cuUUC CAAGGAGGUG CAUUUAU gu  a
 |||||| ||| ||||| |||||||||| ||||||| ||  c
 acaugu aug gaagg guuuuuccac guaaaua ca  u
-      a   a     -          u       u  aa 

>mml-mir-513a-1 (-43.80)   [mml-miR-513a:14-35]

       g        A   GG     U       -  ga 
guguaca ugccuUUC CAG  AGGUG CAUUUAU gu  a
||||||| |||||||| |||  ||||| ||||||| ||  c
uacaugu augggaag guc  uccac guaaaua ca  u
       a        c   uu     u       u  aa 

>mml-mir-513a-2 (-33.50)   [mml-miR-513a:13-34]

u     g   c    A   GG     UC        gaa 
 guaca ugc uUUC CAG  AGGUG  AUUUAUgu   c
 ||||| ||| |||| |||  |||||  ||||||||    
 caugu aug gaag guc  uccac  uaaauaua   u
a     a   a    a   uu     uu        aaa 

>mml-mir-513a-3 (-38.70)   [mml-miR-513a:14-35]

           c    A   GG     U       -  ga 
cuguacauugc uUUC CAG  AGGUG CAUUUAU gu  a
||||||||||| |||| |||  ||||| ||||||| ||  c
gacauguaaug gaag guc  uucac guaaaua ca  u
           a    a   uu     u       u  aa 

>mml-mir-514-1 (-30.20)   [mml-miR-514:56-76]

    u   -   gg   c      -    g    a      u  aua 
augu guc ugu  uac cuacuc ugga agug caauca gu   a
|||| ||| |||  ||| |||||| |||| |||| |||||| ||    
ugca cag acg  aug GAUGAG GUCU UCAC GUUAgu ua   u
    -   u   ua   A      U    -    A      u  aau 

>ptr-mir-506 (-30.30)   [ptr-miR-506:57-77]

ccaua      -   --g   c          a     ua    a     u 
     cuaugu gua   ugc uuauucagga ggugu  cuua uagau a
     |||||| |||   ||| |||||||||| |||||  |||| |||||  
     gguaca cgu   aug GAUGAGUCUU CCACG  GAAU guuua a
-----      a   gua   A          C     --    -     u 

>ptr-mir-507 (-37.90)   [ptr-miR-507:56-76]

   -    -     g  c            a    cau      guc 
gug cugu gugua ug uucacuucaaga gugc   gcaugu   u
||| |||| ||||| || |||||||||||| ||||   ||||||    
cau gaca cacgu au AAGUGAGGUUUU CACG   Uguaua   a
   a    a     a  a            C    UUU      aag 

>ptr-mir-508 (-39.40)   [ptr-miR-508:50-72]

u  -     g   c      c       au         aaa 
 ga gugua ugc cuacuc agagggc  cagucaugu   c
 || ||||| ||| |||||| |||||||  |||||||||    
 cu cacau aug GAUGAG UUUUCCG  GUUAGUaca   u
a  a     a   A      U       AU         aaa 

>ptr-mir-509a-1 (-40.90)   [ptr-miR-509a:55-77]

    c   -   ug    c   - ug     a   g       --g  u 
caug ugu gug  guac cua c  cagac gug caaucau   ua a
|||| ||| |||  |||| ||| |  ||||| ||| |||||||   ||  
guac aca uac  caug GAU G  GUCUG CAU GUUAGUa   au a
    -   g   gu    A   A GU     -   G       aaa  u 

>ptr-mir-509b (-45.50)   [ptr-miR-509b:54-76]

    c   -   ug    c     -         g       --g  u 
cgug ugu gug  guac cuacu gcagacgug caaucau   ua a
|||| ||| |||  |||| ||||| ||||||||| |||||||   ||  
guac aca uac  caug GAUGA UGUCUGCAU GUUAGUa   au a
    -   g   gu    A     G         G       aaa  u 

>ptr-mir-509a-2 (-40.90)   [ptr-miR-509a:55-77]

    c   -   ug    c   - ug     a   g       --g  u 
caug ugu gug  guac cua c  cagac gug caaucau   ua a
|||| ||| |||  |||| ||| |  ||||| ||| |||||||   ||  
guac aca uac  caug GAU G  GUCUG CAU GUUAGUa   au a
    -   g   gu    A   A GU     -   G       aaa  u 

>ptr-mir-510 (-34.60)   [ptr-miR-510:22-44]

cugu        gug    c    - - -A    A  GG         aua 
    guaugugu   gugu cUAC C C  GGAG GU  CAAUCACAu   a
    ||||||||   |||| |||| | |  |||| ||  |||||||||    
    cauguaca   caca gaug g g  ucuc ca  guuagugug   u
---u        gua    u    u a aa    -  aa         gau 

>ptr-mir-513a-1 (-32.30)   [ptr-miR-513a:13-34]

u     g   c    A   G      UC        gaa 
 gugca ugc uUUC CAG GAGGUG  AUUUAUgu   c
 ||||| ||| |||| ||| ||||||  ||||||||    
 caugu aug gaag guc uuccac  uaaauaua   u
a     a   a    a   g      uu        aaa 

>ptr-mir-513b (-28.20)   [ptr-miR-513b:13-34]

u     g   cu   A       A  U         gaa 
 guaca ugc  UUC CAAGGAG UG CAUUUAUgu   c
 ||||| |||  ||| ||||||| || |||||||||    
 caugu aug  gag guuuuuc ac guaaauaua   u
a     a   ag   a       c  u         aaa 

>ptr-mir-513a-2 (-32.30)   [ptr-miR-513a:13-34]

u     g   c    A   G      UC        gaa 
 guaca ugc uUUC CAG GAGGUG  AUUUAUgu   c
 ||||| ||| |||| ||| ||||||  ||||||||    
 caugu aug gaag guc uuccac  uaaauaua   u
a     a   a    a   g      uu        aaa 

>ptr-mir-513a-3 (-40.00)   [ptr-miR-513a:13-34]

u     g        A   GG     UC        gaa 
 gugca ugccuUUC CAG  AGGUG  AUUUAUgu   c
 ||||| |||||||| |||  |||||  ||||||||    
 caugu augggaag guc  uccac  uaaauaua   u
a     a        a   uu     uu        aaa 

>ptr-mir-514-1 (-31.20)   [ptr-miR-514:52-71]

u   -    g   c      -     a   a      u  aua 
 guc ugug uac cuacuc uggaa gug caauca gu   a
 ||| |||| ||| |||||| ||||| ||| |||||| ||    
 cag acgc aug GAUGAG GUCUU CAC GUUAgu ua   u
a   u    a   a      U     -   A      u  aau 

>ptr-mir-514-2 (-31.30)   [ptr-miR-514:55-74]

ugu    -    g   c      -    g    a      u  aua 
   uguc ugug uac cuacuc ugga agug caauca gu   a
   |||| |||| ||| |||||| |||| |||| |||||| ||    
   acag acgc aug GAUGAG GUCU UCAC GUUAgu ua   c
---    u    a   a      U    -    A      u  aau 

>ptr-mir-514-3 (-31.20)   [ptr-miR-514:52-71]

u   -    g   c      -    g    a      u  aua 
 guc ugug uac cuacuc ugga agug caauca gu   a
 ||| |||| ||| |||||| |||| |||| |||||| ||    
 cag acgc aug GAUGAG GUCU UCAC GUUAgu ua   c
a   u    a   a      U    -    A      u  aau 

>ptr-mir-514-4 (-29.50)   [ptr-miR-514:52-71]

u   -u   g   c      -    g    a      u  aua 
 guc  gug uac cuacuc ugga agug caauca gu   a
 |||  ||| ||| |||||| |||| |||| |||||| ||    
 cag  cgc aug GAUGAG GUCU UCAC GUUAgu ua   c
a   uc   a   a      U    -    A      u  aau 

>pbi-mir-506 (-31.50)   [pbi-miR-506:64-84]

ugucu    -cc       -   --g   c          a     --   uu     a 
     agug   uuuaugu gua   ugc uuauucagga ggugu  uac  aaugu u
     ||||   ||||||| |||   ||| |||||||||| |||||  |||  |||||  
     uuac   agguaca cgu   aug GAUGAGUCUU CCACG  AUg  uuaca u
----u    uau       a   gua   A          C     GA   -u     a 

>pbi-mir-507 (-34.90)   [pbi-miR-507:56-76]

     --g      g  c          uaa    c uu     guc 
gugcu   ugugua ug uucacuucaa   gugc a  caugu   u
|||||   |||||| || ||||||||||   |||| |  |||||    
caugg   acacgu au AAGUGAGGUU   CACG U  guaua   a
     aca      a  a          UUC    U UU     aag 

>pbi-mir-508 (-38.34)   [pbi-miR-508:50-72]

u  -     g          c      c u      cauaaa 
 ga gugua ugcucuacuc agaggg g caauca      c
 || ||||| |||||||||| |||||| | ||||||       
 cu cacau acgAGAUGAG UUUUCC C GUUAGU      u
a  a     a          U      A U      acaaaa 

>pbi-mir-509 (-27.80)   [pbi-miR-509:55-77]

    c   -    gg   c      -     a   g     --cug  u 
caug ugu gugu  uac cuacuu caggc gug caauc     ua a
|||| ||| ||||  ||| |||||| ||||| ||| |||||     ||  
guac aca uacg  aug GAUGGG GUCUG CAU GUUAG     au g
    -   g    ua   A      U     -   A     Uaaaa  u 

>pbi-mir-510 (-37.10)   [pbi-miR-510:22-44]

ugc  ug   -     g  uc      -C    A  GG         aua 
   ug  ugu gugug ua  cUACUC  GGAG GU  CAAUCACAu   a
   ||  ||| ||||| ||  ||||||  |||| ||  |||||||||    
   au  gca uacac au  ggugag  ucuc ca  guuagugug   u
-uc  gu   g     a  ga      aa    -  aa         aau 

>pbi-mir-513a-1 (-37.60)   [pbi-miR-513a:13-34]

u     g   -     A   GG     U       -  ga 
 guaca ugc cuUUC CAG  AGGUG CAUUUAU gu  a
 ||||| ||| ||||| |||  ||||| ||||||| ||  c
 caugu aug gaagg guc  uccac guaaaua ca  u
a     a   a     -   uu     u       u  aa 

>pbi-mir-513b (-31.80)   [pbi-miR-513b:13-34]

u     g   c    A          U        ugaa 
 gugca ugc uUUC CAAGGAGGUG CAUUUAUg    c
 ||||| ||| |||| |||||||||| ||||||||     
 caugu aug gaag guuuuuccac guaaauau    u
a     a   a    a          u        gaaa 

>pbi-mir-513c-1 (-37.60)   [pbi-miR-513c:13-34]

u     g   -     A   GG     U       -  ga 
 guaca ugc cuUUC CAG  AGGUG CAUUUGU gu  a
 ||||| ||| ||||| |||  ||||| ||||||| ||  c
 caugu aug gaagg guc  uccac guaaaua ca  u
a     a   u     -   uu     u       u  aa 

>pbi-mir-513a-2 (-35.20)   [pbi-miR-513a:13-34]

u     g   c    A   GG     U       -  ga 
 guaca ugc uUUC CAG  AGGUG CAUUUAU gu  a
 ||||| ||| |||| |||  ||||| ||||||| ||  c
 caugu aug gaag guc  uccac guaaaua ca  u
a     a   a    a   uu     u       u  aa 

>pbi-mir-513c-2 (-41.30)   [pbi-miR-513c:13-34]

u         -     A   GG     U       -  ga 
 guacauugc cuUUC CAG  AGGUG CAUUUGU gu  a
 ||||||||| ||||| |||  ||||| ||||||| ||  c
 cauguaaug gaagg guc  uccac guaaaua ca  u
a         a     -   uu     u       u  aa 

>pbi-mir-514 (-27.40)   [pbi-miR-514:56-75]

    u   -    g   c      -    g    a      u  aua 
augu guc ugug uac cuacuc ugga agug caauca gu   a
|||| ||| |||| ||| |||||| |||| |||| |||||| ||    
ugca cag augc aug GAUGAG GUCU UCAC GUUAgu ua   u
    -   u    a   a      U    -    A      u  aau 

>hsa-mir-513b (-35.70)   [hsa-miR-513b:14-35]

--g      g   cu   A          U         gaa 
   uguaca ugc  UUC CAAGGAGGUG CAUUUAUgu   c
   |||||| |||  ||| |||||||||| |||||||||    
   acaugu aug  gag guuuuuccac guaaauaua   u
acg      a   ag   a          u         aaa 

>hsa-mir-513c (-36.60)   [hsa-miR-513c:14-35]

-  -     g   c       AG      UC        gaa 
 gc guaca ugc uUUCUCA  GAGGUG  GUUUAUgu   c
 || ||||| ||| |||||||  ||||||  ||||||||    
 cg caugu aug gaagagu  uuccac  uaaauaua   u
a  a     a   a       cu      uu        aaa 

>age-mir-513e-1 (-39.00)   [age-miR-513e:16-36]

--cag      g   c   -A          C         gaa 
     cgugca ugc cUU  CAAGAAGGUG CAUUCAUgu   c
     |||||| ||| |||  |||||||||| |||||||||    
     gcaugu aug gaa  guucuuccgc guaaguaua   u
guacg      a   a   ga          c         aaa 

>hsa-mir-1321 (-11.60)   [hsa-miR-1321:53-70]

-acauua   -a   ag    auua      -u    caaau 
       uga  gca  uauu    ucccug  uuua     a
       |||  |||  ||||    ||||||  ||||      
       acU  UGU  GUGG    AGGGAC  aaau     a
gauagaa   AG   AA    ----      uc    aaagg 

>hsa-mir-1322 (-11.30)   [hsa-miR-1322:51-69]

---       u ---a    gaa  -  a     uacau 
   aguauca g    auua   ac cu cuuau     a
   ||||||| |    ||||   || || |||||      
   UCGUAGU C    UAGU   ug ga gaaua     g
auG       - GUCG    -AG  c  a     cauuu 

>hsa-mir-720 (-33.10)   [hsa-miR-720:27-43]

-----------------ccgg      cacg       ------         GCUG    - UC A 
                     aucuca    guggugu      uaauaUCUC    GGGC C  C a
                     ||||||    |||||||      |||||||||    |||| |  | a
                     uagagu    caccaca      auugugggg    cccg g  g a
gauuauuuccugagaauuaag      uuca       aaagag         ---a    u uu u 

>hsa-mir-1197 (-26.40)   [hsa-miR-1197:57-77]

acuuccu      -u     ugc   u       gug g    - uuu 
       gguauu  gaaga   ggu gaccaug   u uacg c   a
       ||||||  |||||   ||| |||||||   | |||| |   u
       cuauaa  cuUCU   UCA CUGGUAC   G AUgc g   u
------a      cu     ---   U       ACA G    a ugu 

>hsa-mir-1324 (-32.50)   [hsa-miR-1324:61-84]

-----   ga  --        -   gc   -gucc     ucacu     c 
     ccu  ag  aggugcau gaa  cug     ugccc     gggaa c
     |||  ||  |||||||| |||  |||     |||||     ||||| c
     gga  uc  UUCACGUA CUU  GAC     auggg     cccuu c
accuc   gg  CU        U   AA   AGACC     --ucu     c 

>oan-mir-9-1 (-51.20)   [oan-miR-9:30-51] [oan-miR-9*:68-88]

------ggggccggaucgcacu       c   ggUC       A       G     g   a 
                      gagcugg uuu    UUUGGUU UCUAGCU UAUGa ugu u
                      ||||||| |||    ||||||| ||||||| ||||| ||| g
                      uucgacc aaa    AAGCCAA AGAUCGA AUacu gua u
ccccggccccgacacugccgcc       a   aUGU       G       A     -   g 

>oan-mir-1325 (-45.00)   [oan-miR-1325:14-35]

-----g   cc    c      G    CU          ---      
      cag  uccu cuUGGA GUUU  GGCCCGGCUG   Gaauu 
      |||  |||| |||||| ||||  ||||||||||   |||| a
      guc  agga ggaccu uaaa  ccgggccgac   cuugc 
cgaagg   ua    u      g    ac          gaa      

>oan-mir-1326 (-51.00)   [oan-miR-1326:72-93]

cua     aa    ---   -                   c       a   uuuuga   a 
   guagu  guua   ggg gcuuugggaagagcaucag uuuuuca acu      aac u
   |||||  ||||   ||| ||||||||||||||||||| ||||||| |||      |||  
   uaucg  cagu   ccc cgaaauuCUUCUCGUAGUU AGAAAGU Uga      uug c
-ga     cc    gaa   g                   A       C   -ucugg   u 

>oan-mir-1327 (-40.46)   [oan-miR-1327:31-52]

-uuaacaa  acu   c    -------                 CUG          AUccuauauu 
        gg   gua uggg       gacuguucuuUAAAAGG   UUAAAUGAUG          u
        ||   ||| ||||       |||||||||||||||||   ||||||||||           
        cc   cau accc       cuggcaagagauuuucc   gauuuacuac          u
aaaaacgg  -ac   c    acuccuu                 aaa          aacugcaauu 

>oan-mir-1328 (-22.40)   [oan-miR-1328:29-46]

gugucuu    aaaaa   gaga    a       AAA   GAACUaggccaaaggguucaaaauagaucaggcaaa 
       uaga     ugu    uugu GAGAGAG   UGA                                    g
       ||||     |||    |||| |||||||   |||                                    a
       aucu     aca    aaua uucucuc   auu                                    a
--uucgu    -----   --ag    -       --g   aaguagaucuauguggauugaucaugaaagucacua 

>oan-mir-1329 (-42.99)   [oan-miR-1329:27-48] [oan-miR-1329*:65-85]

---------------gaggaaucucaa  u   ug  g     CA      AG       U  auuucuc 
                           uc ggu  ua gggUA  GUGAUC  GUUACGA GG       a
                           || |||  || |||||  ||||||  ||||||| ||        
                           ag uca  au ccuAU  CACUGG  CGAUGCU CC       a
cuccuugcccugguuuuaacaacgaga  c   gu  a     AG      CU       -  aacaaug 

>oan-mir-1330 (-42.80)   [oan-miR-1330:21-41]

-      u    -  uc     G       C            a     
 ggaugu uggu gu  ucucu UACGAUU GCAUUGCCCAUU uuaa 
 |||||| |||| ||  ||||| ||||||| |||||||||||| ||| u
 cuuaua accg cg  agaga auguuaa cguaacggguaa aaug 
c      u    u  -u     a       u            c     

>oan-mir-129 (-51.00)   [oan-miR-129:30-50] [oan-miR-129*:74-93]

-------ggggagaggugucuccgucucccuuggauCU     C   CU      G   uu cu  a 
                                      UUUUG GGU  GGGCUU Cug  c  cu a
                                      ||||| |||  |||||| |||  |  ||  
                                      AAAAC CCA  CCCGAA gac  g  ga u
ccccugguguagacggcugguccagagagcgucuaUGA     C   UU      g   -u au  c 

>oan-mir-96 (-41.10)   [oan-miR-96:24-46] [oan-miR-96*:66-87]

gugga   --g   -    gg   cuU         G     UU      -uu  cu 
     gau   ucu gcuu  ccu   UUGGCACUA CACAU  UUGCUu   gu  c
     |||   ||| ||||  |||   ||||||||| |||||  ||||||   ||   
     cug   agg cgaa  ggg   AACCGUGAU GUGUA  AACgag   cg  u
--cga   uua   u    aa   UAU         -     CU      ucu  uc 

>oan-mir-183 (-50.95)   [oan-miR-183:31-52]

--     -      cc -------  ac  -         g      --AC     GA        ugaaaa 
  ggagg gggaga  c       uc  uc cuguucugu UAUGGC    UGGUA  AUUCACUg      c
  ||||| ||||||  |       ||  || ||||||||| ||||||    |||||  ||||||||       
  ucucu cccucu  g       ag  ag gacgagaca auaccg    accau  uaagugac      a
cc     a      ca aacacca  aa  a         a      ggaa     --        uaucac 

>oan-mir-29a-1 (-42.56)   [oan-miR-29a-1*:32-53] [oan-miR-29a:70-90]

   -aa   uc    ga    ucuagagg            UUU       C    ucaa 
uca   ggc  cugu  cccc        augACUGAUUUC   UGGUGUU AGag    u
|||   |||  ||||  ||||        ||||||||||||   ||||||| ||||    a
agu   ccg  gaua  gggg        uaUUGGCUAAAG   ACCACGA Ucuu    u
   gca   -c    -a    -uuaguaa            UUU       -    uuac 

>oan-mir-29b-1 (-43.96)   [oan-miR-29b*:36-57] [oan-miR-29b:76-97]

   -    a  acgauuuuaaag    u       -          U      GU      uua   a 
gag guag cc            cucc ucaggaa gCUGGUUUCA AUGGUG  UUAGau   acu c
||| |||| ||            |||| ||||||| |||||||||| ||||||  ||||||   |||  
uuc cguc gg            gagg gguucuU UGACUAAAGU UACCAC  GAUcug   uga u
   a    -  ---------caa    u       G          U      --      ---   g 

>oan-mir-490 (-54.30)   [oan-miR-490:30-49] [oan-miR-490*:67-89]

---------gggagacuuggaaaguuca          C      --         G   caa guu 
                            cgguucgacg CAUGGA  UCUCCAGGU GGU   g   a
                            |||||||||| ||||||  ||||||||| |||   |    
                            gucgagcUGU GUACCU  GGAGGUCCA Cca   c   g
ccccugagaacgcagacaacgagcacua          C      CA         A   -cg aga 

>oan-mir-140 (-58.70)   [oan-miR-140*:35-54] [oan-miR-140:74-95]

uuu    cu u u       ucucu        -  A             A       uu   uc 
   gugu  g g gugucuc     guguccug cC GUGGUUUUACCCU UGGUagg  acg  a
   ||||  | | |||||||     |||||||| || ||||||||||||| |||||||  |||   
   uacg  c c cgcaggg     cauaggac GG CACCAAGAUGGGA ACCAUcu  ugu  u
ggc    -u u u       ----c        A  -             C       --   cg 

>oan-mir-1331 (-43.20)   [oan-miR-1331:4-25]

uga        -G   -  GG   G    c  u    uacaggaugaccggacaagggaac 
   UGGGGUGG  AGG UU  UGU UGug ag cggc                        g
   ||||||||  ||| ||  ||| |||| || ||||                        g
   accuuacc  ucc aa  aca acgc uc gccg                        a
-gc        ag   u  ag   g    -  -    gggcgcaaucgucguauuugacaa 

>oan-mir-218 (-47.10)   [oan-miR-218:31-51] [oan-miR-218*:70-89]

  a   uu  c    ua   a          U         CU        gg    aag 
gc gua  ga gguu  gcg gauuuucugU GUGCUUGAU  AACCAUGU  uugc   g
|| |||  || ||||  ||| |||||||||| |||||||||  ||||||||  ||||   u
cg cau  cu ucga  cgc cugaaaggua cACGAACUG  UUGGUACA  Aaug   a
  a   --  u    --   a          c         UC        -A    agu 

>oan-mir-33a (-50.10)   [oan-miR-33-5p:22-40] [oan-miR-33a-3p:60-79]

    ca c     c g     G          UU         gug   g 
gccg  g ggcug c cugua UGCAUUGUAG  GCAUUGcau   ucu a
||||  | ||||| | ||||| ||||||||||  |||||||||   |||  
cggc  c ccgac g gacaU ACGUGACGUC  CGUAACgug   gga c
    -c -     c a     A          CC         ---   c 

>oan-mir-1332 (-42.90)   [oan-miR-1332:46-67]

   --ga   a             uc       c  -  a 
ccc    cca ucagaggccaucu  aaccgau gg ga c
|||    ||| |||||||||||||  ||||||| || ||  
ggg    ggu aGUCUCUGGUGGA  UUGGUUA cc cu a
   aacc   c             GA       A  u  g 

>oan-mir-193 (-38.00)   [oan-miR-193*:18-39] [oan-miR-193:55-76]

---gguu      -      u    GU    A    G  A  Ag uug 
       gugauu ccagag CGGG  UUUG GGGC AG UG  u   u
       |||||| |||||| ||||  |||| |||| || ||  |   g
       cacugg gguuuU GCCC  AAAC CCCG UC Ac  a   u
cuaguuu      u      C    UG    A    G  A  cu uuu 

>oan-mir-365 (-36.20)   [oan-miR-365*:13-35] [oan-miR-365:53-74]

      aa        AC           ----   -    uu 
gcaggg  aaugAGGG  UUUUGGGGGCA    GAU GUGu  c
||||||  ||||||||  |||||||||||    ||| ||||  c
cguucu  uUAUUCCU  AAAAUCCCCGU    cua cacg  a
      cg        -A           AAUa   u    uu 

>oan-mir-1333 (-54.90)   [oan-miR-1333:68-88]

u    gucugu                        a        c    ucc  cu 
 ucua      uuacgaugcuaccgauuccuguuu uuuguuuu gaug   gu  c
 ||||      |||||||||||||||||||||||| |||||||| ||||   ||   
 agau      aaugcuacgauggcUAAGGACAAA AGACAAAA CUgc   cg  c
a    -aaauu                        C        -    cuu  cc 

>oan-mir-122 (-44.60)   [oan-miR-122:29-50] [oan-miR-122*:64-82]

-aaccuu    u   ug    c  -      GG       C           ugucc 
       ggau guu  cuac ag agcugU  AGUGUGA AAUGGUGUUUG     a
       |||| |||  |||| || ||||||  ||||||| |||||||||||      
       ccua cgg  gaug uc ucgaua  UCACACU UUACCGCAAAc     g
uucucug    c   --    -  a      aA       A           uaucu 

>oan-mir-1334 (-40.80)   [oan-miR-1334:71-92]

    a  ucu u  -    gc   gg   ca  ca               acuc  u   u 
cagc ca   g ga gacu  ugc  ucc  cc  gaggaaaucacuucc    ug guu u
|||| ||   | || ||||  |||  |||  ||  |||||||||||||||    || |||  
gucg gu   c cu cuga  acg  agg  GG  CUUCUUUAGUGAAGG    ac uaa c
    -  --- -  a    --   aa   uC  -A               AUUa  u   a 

>oan-mir-1335 (-43.50)   [oan-miR-1335:87-104]

gagggacugaacgccgccagugucacu    g       uggu  g     ucu      cu  g 
                           ccca cucgguc    au uccug   cggaug  gg u
                           |||| |||||||    || |||||   ||||||  ||  
                           GGGU GAGUCGG    ug gggac   gucuau  cc g
--------------------cUCCCUC    G       ----  g     --u      -u  u 

>oan-mir-1336 (-43.20)   [oan-miR-1336:19-41]

gucc     -      g    U    G     GAA         ugagc 
    ugucu cucccu gcUC UUCU CAUCU   CCUUUUCuc     u
    ||||| |||||| |||| |||| |||||   |||||||||      
    gcaga gagggg cgag gagg guggg   ggaaaagag     g
--ca     a      a    u    -     -uc         uaguu 

>oan-mir-875 (-36.40)   [oan-miR-875:13-35] [oan-miR-875*:48-69]

        gu   AU        C  AU      Uucu 
guuuagug  acA  ACCUCAGU UU  CAGGUG    u
||||||||  |||  |||||||| ||  ||||||    u
caagucac  UGU  UGGAGUCA AA  GUCCac    c
        uc   GU        U  CG      uuaa 

>oan-mir-1337 (-33.50)   [oan-miR-1337:10-31]

-gg     c   A       UCG A     C     u       
   cucgg gUU GGGAUGG   G CGAGA Ucgcu ggauuu 
   ||||| ||| |||||||   | ||||| ||||| ||||| g
   ggguc cag cccuacc   c guucu agcga cuuaga 
uca     u   -       --- -     -     -       

>oan-mir-181a (-38.38)   [oan-miR-181a:30-52] [oan-miR-181a*:70-91]

-----------   uucugcuu  aa        u   u A   U      CU       A    ggaau 
           gaa        cg  ugguugcu cag g ACA UCAACG  GUCGGUG GUuu     u
           |||        ||  |||||||| ||| | ||| ||||||  ||||||| ||||     a
           cuu        gc  accaacgg guc C UGU AGUUGC  CAGCUAC CAaa     a
cuuucguacuu   -uccuccu  -c        c   C A   U      --       -    gauga 

>oan-mir-181b (-33.20)   [oan-miR-181b:27-49] [oan-miR-181b*:67-87]

ugca a   uaa a     --c   -augAA         CUG           aa  c 
    g guu   c aaggu   cca      CAUUCAUUG   UCGGUGGGUuu  cu u
    | |||   | |||||   |||      |||||||||   |||||||||||  ||  
    c caa   g uucca   ggu      GUAAGUAAC   AGUCACUCgaa  gg g
---a -   -cg a     cuc   gucAAG         --A           ca  a 

>oan-mir-137a (-49.70)   [oan-miR-137a*:28-50] [oan-miR-137a:64-86]

    c   uuucug           ug   G           UG A     -  g 
gcuu guc      acucucuucgg  ACG GUAUUCUUGGG  G UAAUa cg a
|||| |||      |||||||||||  ||| |||||||||||  | ||||| || u
cgga cgg      ugagaggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
    -   cgucua           GA   G           GU -     u  a 

>oan-mir-1338 (-44.60)   [oan-miR-1338*:26-46] [oan-miR-1338:70-91]

     cuuuc   uu    g   u        -   -----  C        a a uu  cuuc 
ggccu     uag  guug gga gCAGGGAG CAG     AC AGUCCAGU g g  gc    a
|||||     |||  |||| ||| |||||||| |||     || |||||||| | |  ||     
ccggg     guc  cgau ucu cgucccuC GUC     UG UCGGGUCA C c  ug    a
     ----u   --    g   u        U   ACUCG  U        - - cu  aauu 

>oan-mir-204 (-46.00)   [oan-miR-204:31-52] [oan-miR-204*:69-88]

   -  - -     auccuu     u c   gcU         CA    A     g aag 
gac cg c cggug      gugac g uga   UCCCUUUGU  UCCU UGCCU g   u
||| || | |||||      ||||| | |||   |||||||||  |||| ||||| |   c
cug gu g gccac      cacug c acu   AGGGAAACG  AGGG ACggg u   a
   u  a a     aaccuc     c a   AGU         AC    -     g aaa 

>oan-mir-190a (-28.00)   [oan-miR-190a:12-33] [oan-miR-190a*:48-69]

    cu    - UG               UA     uuau 
aggc  cugu g  AUAUGUUUGAUAUAU  GGUug    u
||||  |||| |  |||||||||||||||  |||||     
ucug  gaca C  UAUACAAACUAUAUA  UCAac    u
    -u    U CU               --     cuaa 

>oan-mir-15c (-53.30)   [oan-miR-15c:28-48] [oan-miR-15c*:64-85]

     ----caga  ---ag     a        UA     A  UC          gggac 
gccca        gc     ccuug ggggguug  GCAGC CA  AUGGUUUGUa     a
|||||        ||     ||||| ||||||||  ||||| ||  ||||||||||      
cgggu        cg     ggaac ccccuaAC  CGUCG GU  UACCAGACau     a
     caagaggg  caaga     -        UC     G  CU          agagg 

>oan-mir-16c (-56.80)   [oan-miR-16c:28-49] [oan-miR-16c*:72-93]

  -c    u  au u   -    g   c U       CGUA          ---uu       
gc  cggc cg  g guc ggcc ugc c AGCAGCA    AAUACUGGAG     ugggga 
||  |||| ||  | ||| |||| ||| | |||||||    ||||||||||     ||||| u
cg  gccg gc  c cag ccgg gcg G UCGUCGU    UUAUGACCuc     gcuccg 
  cc    c  cu c   g    a   A U       UACG          ucguu       

>oan-mir-106 (-47.10)   [oan-miR-106:30-50] [oan-miR-106*:65-86]

    gg  -      ag   u    u    -AA           G     G   c uu 
acuu  ug uuggau  gcc uggu gugc   AAGUGCUUACA UGCAG Uag u  u
||||  || ||||||  ||| |||| ||||   ||||||||||| ||||| ||| |   
ugag  ac aacuua  cgg acca uacG   UUCACGAAUGU ACGUC Auc a  a
    ua  u      -a   u    u    AUC           A     -   c ug 

>oan-mir-18 (-32.02)   [oan-miR-18:29-48] [oan-miR-18*:69-90]

--  uaucc     a   -----------u  cc         --   U    C   U     ua  --g     
  gc     auuuc gaa            gu  cuuguguUA  AGG GCAU UAG GCAGU  gu   aagu 
  ||     ||||| |||            ||  |||||||||  ||| |||| ||| |||||  ||   ||| a
  cg     uaaag cuu            cg  gaacacggU  UCC CGUA AUC CGUCA  ua   uucg 
ug  -uacc     -   caacauauaauc  uc         CU   U    A   C     Uc  aga     

>oan-mir-20b (-40.60)   [oan-miR-20b:24-46] [oan-miR-20b*:65-85]

u  aaaucg       ac     -CA           G     G   uu  uuu 
 gg      uauccug  aguac   AAGUGCUCAUA UGCAG UAG  uu   c
 ||      |||||||  |||||   ||||||||||| ||||| |||  ||    
 cc      auaggac  ucaug   UUCACGGGUGU AUGUC Auc  ag   a
a  -gugaa       -c     ACA           A     -   uu  uua 

>oan-mir-19b (-41.90)   [oan-miR-19b*:22-41] [oan-miR-19b:59-81]

    c   ----    c                 -  -      UCC     uau 
aaga agu    acug uuacagucAGUUUUGCA GG UUUGCA   cagcg   a
|||| |||    |||| ||||||||||||||||| || ||||||   |||||   c
uucu ucg    uggu aguguuAGUCAAAACGU CC AAACGU   GUcgu   a
    a   uuug    -                 A  U      ---     uaa 

>oan-mir-92a-1 (-53.00)   [oan-miR-92a-1*:32-54] [oan-miR-92a:72-93]

      -  -       g a  ga             G     UU  U   U     gu     
aucuga ga agguuuu c cu  uuccuccauGGGU GGGAU  GU GCA UACUu  agcu 
|||||| || ||||||| | ||  ||||||||||||| |||||  || ||| |||||  ||| a
uggacu cu uucagga g ga  agggaggUGUCCG CCCUG  CA CGU AUgag  uugu 
      a  g       - -  --             G     UU  -   U     au     

>oan-mir-363 (-33.40)   [oan-miR-363*:14-35] [oan-miR-363:57-77]

       u   gu         CA  A         ga  aguu 
guuuugc guu  CGGGUGGAU  CG UGCAAUUUu  uu    u
||||||| |||  |||||||||  || |||||||||  ||     
caggacg caa  GUCUACCUA  GC ACGUUAAaa  ag    a
       c   aU         UG  -         ag  gaug 

>oan-mir-1339 (-28.00)   [oan-miR-1339:30-50] [oan-miR-1339*:68-89]

ugaugaaagcacuacuaa     a     A -        -  A          ucag 
                  gaacu gauuc G AUGCAAGA GA UUUUCAGUug    u
                  ||||| ||||| | |||||||| || ||||||||||    u
                  uuuga cuaaG C UACGUUUU CU AAAAGUcagu    u
----------acuauaag     c     A G        A  C          uggg 

>oan-mir-1a (-41.54)   [oan-miR-1a:62-83]

   a  ua a      c                     ac     ugaaca 
ggg ug  c ccugcu agaguacauacuucuuuaugu  ccaua      u
||| ||  | |||||| |||||||||||||||||||||  |||||       
ccc gc  g ggacgg uuuUAUGUAUGAAGAAAUGUA  GGUau      a
   a  -c c      u                     -A     cgaaaa 

>oan-mir-133a (-37.90)   [oan-miR-133a*:24-45] [oan-miR-133a:62-83]

ggccuucgg      uuu    a       AA  U  A        accuc 
         caaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
         ||||||   |||| |||||||  || || ||||||||      
         guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
---ccacaa      uau    G       AC  C  C        guaac 

>oan-mir-29a-2 (-40.72)   [oan-miR-29a-2*:24-44] [oan-miR-29a:64-84]

      -------cca         -  ggc           UCU       --ca   ucu 
caggac          ucucuuaca ca   UGACCGAUUUC   UGGUGUU    gag   c
||||||          ||||||||| ||   |||||||||||   |||||||    |||    
guccug          gggggaugu gu   aUUGGCUAAAG   ACCACGA    uuc   a
      acgacgaaaa         a  ---           UUU       Ucug   uug 

>oan-mir-205 (-43.22)   [oan-miR-205:31-51] [oan-miR-205*:68-89]

ga      aacga      gguu   g    C           C        uuucg 
  auucgg     uccaug    ucu uugU CUUCAUUCCAC GGAGUCUg     u
  ||||||     ||||||    ||| |||| ||||||||||| ||||||||     a
  uaaguu     agguac    gga aACA GAAGUGAGGUG CUUUAGac     c
-c      ----g      ----   g    C           A        uaauc 

>oan-mir-1340 (-41.80)   [oan-miR-1340*:25-45] [oan-miR-1340:59-80]

guuu  a    ---------  ua      cg     C   C           C  agag 
    gc caca         cc  uggugu  uCUUC AAU CAGAGGACAGC ag    a
    || ||||         ||  ||||||  ||||| ||| ||||||||||| ||     
    cg gugu         gg  acuaca  AGAGG UUA GUUUCCUGUCG Uc    g
----  a    ugaaaugac  gc      au     A   U           -  caga 

>oan-mir-135b (-58.20)   [oan-miR-135b:31-53] [oan-miR-135b*:70-91]

   -a  -     uuggcu    g                  UAU          uug ug 
cgg  uc cuccc      cucu cuguggccUAUGGCUUUU   UCCUAUGUGA   c  c
|||  || |||||      |||| ||||||||||||||||||   ||||||||||   |   
gcc  ag gaggg      gaga gacaucGGGUACCGAAAG   GGGAUGUAcu   g  u
   ac  a     ------    -                  -UC          caa uu 

>oan-mir-1341 (-64.40)   [oan-miR-1341:22-45]

     - g -     --          GCGUGAUGACAACUUUGGCCGUaggaaagcuuggggaccgguug 
ggagg g g cuccu  ccggcaguGU                                            g
||||| | | |||||  ||||||||||                                            u
cuucc c c gaggg  ggccgucacg                                            c
     a g a     ag          uaagucccauugauacugucacggcagugucccucgaagcacuu 

>oan-mir-1342 (-43.90)   [oan-miR-1342:17-34]

      a     g ggA     G      U      ca     a 
cccacu uuuuu u   ACUGG AUUGCU GGCCua  auggu c
|||||| ||||| |   ||||| |||||| ||||||  ||||| u
gggugg aggag g   ugacc ugacgg ucgggu  uaccg a
      g     g aag     g      -      cg     g 

>oan-mir-1343 (-44.70)   [oan-miR-1343:7-28] [oan-miR-1343*:45-63]

            AC  A C      CG    gagc 
gccgggGAGGGG  CG C CCCAGU  Cccg    c
||||||||||||  || | ||||||  ||||    g
cggccccUCCCU  GC G GGGUCG  GGgc    a
            -A  A A      --    aaag 

>oan-mir-196a (-52.50)   [oan-miR-196a:29-50] [oan-miR-196a*:65-86]

      cu  ---c  a     uc          GU      A          a ug   
gcccgc  cg    uc gcugg  uguggcuUAG  AGUUUC UGUUGUUGGG u  aa 
||||||  ||    || |||||  ||||||||||  |||||| |||||||||| |  | u
cgggug  gc    gg ugacu  acauugAGUC  UCAAAG ACAACGGCUc a  uu 
      cu  uuuu  c     --          UG      A          a gu   

>oan-mir-137b (-41.90)   [oan-miR-137b:53-75]

---------cca   - -        g   g       ug    c      -  g 
            gcc c cuuucgau acg guauucu  ggua auaaua cg a
            ||| | |||||||| ||| |||||||  |||| |||||| || u
            cgg g gggagcuG UGC CAUAAGA  UCGU UAUUgu gc g
ggucugcagcca   a a        A   G       GU    -      c  g 

>oan-mir-1422a (-47.20)   [oan-miR-1422a*:21-42] [oan-miR-1422a:57-77]

----------gaccauc                    G     UG         gua 
                 augauucugguuuCAAUCCA GCAAG  UUUCUAUau   c
                 |||||||||||||||||||| |||||  |||||||||   a
                 uacugggaccaagGUUAGGU UGUUC  AAAGAUgua   g
cugagacacauauauua                    G     UA         aua 

>oan-mir-1422e (-23.20)   [oan-miR-1422e:14-35] [oan-miR-1422e*:51-72]

    au  -ua  uUA        A       UU     ugug 
caug  uc   gu   AGUCAUGA AAGGUUU  UUcag    c
||||  ||   ||   |||||||| |||||||  |||||     
guac  ag   ca   UCGGUACU UUCCAAA  AGGuc    a
    -c  uac  UAA        A       --     uaau 

>oan-mir-1422h (-35.50)   [oan-miR-1422h*:18-39] [oan-miR-1422h:55-76]

    --c      c   u           A    U   UU    au 
acau   augauu ugg uUUAGUCAUGA AGCG UUU  Cagu  u
||||   |||||| ||| ||||||||||| |||| |||  ||||  a
ugua   uacuag acc GAGUCAGUACU UUGC AAA  guua  a
    uua      u   C           G    U   Gg    au 

>oan-mir-1422b-1 (-54.10)   [oan-miR-1422b-1*:42-63] [oan-miR-1422b:79-100]

gaccucgcccagauuggag    -cauc        u  u              U           gua 
                   ugag     gugauucu gu ucAAUCCAUACAAG AUUUUCUAUau   c
                   ||||     |||||||| || |||||||||||||| |||||||||||   a
                   acuc     uacuggga ca AGUUAGGUGUGUUC UAAAAGAugua   g
-------------cuggag    auaua        c  U              -           gua 

>oan-mir-1422f (-44.20)   [oan-miR-1422f:27-47] [oan-miR-1422f*:67-86]

u        uc       -      uuUAAGUCAUGACAAGUUUUUCUugcaguagagauaaucu 
 uggaggga  augaugg uucugg                                        g
 ||||||||  ||||||| ||||||                                         
 acuuuucu  uacuacc gagacc                                        g
g        -c       u      caugcauuauacuagaaccaUAGUCAGUACUGGUAAAAAA 

>oan-mir-1422g (-49.20)   [oan-miR-1422g:29-49] [oan-miR-1422g*:67-88]

-------------------------------gauuagaggga   ucau    c    uUA                   -----   ag 
                                          gca    gauu uggu   AGUCGUGAUGAGUUUUUCU     auc  u
                                          |||    |||| ||||   |||||||||||||||||||     |||   
                                          cgu    cuag acca   UCAGUACUGCUCAAAAAGG     uag  a
cuacaaaccucccuuuacauuuuugcauuuccuaaacucaua   uauc    u    UAG                   ucuaa   ac 

>oan-mir-1422c (-48.30)   [oan-miR-1422c*:31-52] [oan-miR-1422c:68-89]

agguggagaugaccauc    uu     uu             UC         gua 
                 cuga  cuggu  CAAUCCAUACUAG  UUUCUAUau   c
                 ||||  |||||  |||||||||||||  |||||||||   a
                 gacu  gacca  GUUAGGUAUGGUC  AAAGAugua   g
------uucauauauua    ug     UU             CA         aua 

>oan-mir-1422i (-40.73)   [oan-miR-1422i*:22-43] [oan-miR-1422i:63-83]

   accauc          uu          -     GU     uuacaua 
gug      augauucugg  UCAAUCCAGA GCAGU  UUUCU       c
|||      ||||||||||  |||||||||| |||||  |||||       a
cac      uacugggacc  AGUUAGGUCU CGUCA  AAAga       g
   auauuu          CU          A     --     ucuaaua 

>oan-mir-1422k (-44.00)   [oan-miR-1422k-5p:23-43] [oan-miR-1422k-3p:61-82]

      auug          u          C   U           auu 
gugauc    ugaugcuggu uAAGUCCAGA AAG GUUUUCUguau   u
||||||    |||||||||| |||||||||| ||| |||||||||||   a
uauuag    acuacgacca GUUUAGGUCU UUC CAAAAGAugua   g
      ----          U          A   -           aua 

>oan-let-7b (-41.60)   [oan-let-7b:5-26] [oan-let-7b*:61-80]

    UG                    ucaggggagugauuu 
ggga  AGGUAGUAGGUUGUGUGGUU               u
||||  ||||||||||||||||||||                
ccCU  UCCGUCAUCCGACAUAUCaa               g
    --                    uagaagacuaacccc 

>oan-mir-219 (-66.50)   [oan-miR-219*:31-53] [oan-miR-219:74-95]

     -aac  a   a c       c     U   U     AA           ------    a 
ggccc    cg gcc g ggggccc gccgc GAU GUCCA  CGCAAUUCUUG      ugcg g
|||||    || ||| | ||||||| ||||| ||| |||||  |||||||||||      ||||  
ccggg    gc cgg c ccucggg cggUG CUA CAGGU  GUGUUAAGAgc      gcgu u
     cgca  g   - -       u     U   -     CA           caaccg    u 

>oan-mir-451 (-51.50)   [oan-miR-451:24-46]

     acc a     ug  g  gA                GA 
acggc   g ggguc  gc ag  AACCGUUACCAUUACU  G
|||||   | |||||  || ||  ||||||||||||||||   
ugucg   c cccgg  cg uc  uuggcaaugguaauga  U
     -ac a     gu  g  uc                UU 

>oan-mir-144 (-60.70)   [oan-miR-144*:50-72] [oan-miR-144:87-106]

ggcuuugccugcucugaggcgcccccauuguugcccggggcccu   g  G        G         -A    gc 
                                            ggc gG AUAUCAUC UAUACUGUA  GUuu  u
                                            ||| || |||||||| |||||||||  ||||   
                                            ccg UC UGUAGUAG AUAUGACAU  caga  a
-------------------ccgaggacgacccgaccccgugggc   a  A        -         ca    gu 

>oan-mir-139 (-41.40)   [oan-miR-139:16-37] [oan-miR-139*:52-73]

gg   -c   g    g    -   U  A           -g aca 
  ggc  cgg ugua UCUA CAG GC UGUGUCUCCAG  g   c
  |||  ||| |||| |||| ||| || |||||||||||  |    
  ccg  gcc acaU AGGU GUC CG ACACAGAGGUc  c   u
ca   aa   a    -    U   U  -           ga aga 

>oan-mir-1344 (-25.54)   [oan-miR-1344:5-28]

-----cac   A   U    AAUG     -    gcu    aaugaa 
        cUG UGC GGGA    UAGUU CUGG   ggga      g
        ||| ||| ||||    ||||| ||||   ||||       
        ggc acg cccu    gucgg ggcc   cccu      a
gugcccua   -   c    cccu     c    -ac    aaauaa 

>oan-mir-130c (-61.20)   [oan-miR-130c*:19-39] [oan-miR-130c:53-74]

    gg          ga               UG  A  gag g 
ggau  ccgccggccg  GCCCUUUUGCCGUUG  CU Cu   c u
||||  ||||||||||  |||||||||||||||  || ||   |  
ccug  ggcggucggc  CGGGAAAAUGGUAAC  GA ga   g g
    -g          UA               GU  C  --g a 

>oan-mir-301 (-41.50)   [oan-miR-301*:36-56] [oan-miR-301:73-95]

uauua  g     uuuacgcu       aa  a     C    ---U          A  -   cu 
     ug ugugu        uucugcu  cg auGCU UGAC    UUAUUGCACU Cu guu  u
     || |||||        |||||||  || ||||| ||||    |||||||||| || |||   
     ac acaca        aagacga  gu uaCGA ACUG    GAUAACGUGA ga cga  u
--aug  g     -------u       aa  c     A    UUAU          C  u   ca 

>oan-mir-30c (-40.62)   [oan-miR-30c:31-54] [oan-miR-30c*:70-91]

---cuguucuaaagagcccugagugacagguacU       U   ACA         guaga 
                                  GUAAACA CCU   CUCUCAGCU     u
                                  ||||||| |||   |||||||||     g
                                  CAUUUGU GGA   GAGGGUCga     u
gacaagagaaaccgacuaaagguuccgucucUCU       C   --A         aagag 

>oan-mir-30a (-51.40)   [oan-miR-30a:31-53] [oan-miR-30a*:73-94]

   ug --         -----------    --     a   a            UC           g gaagc 
gag  g  auauuggca           cuga  cagug gcg cUGUAAACAUCC  GACUGGAAGCu u     a
|||  |  |||||||||           ||||  ||||| ||| ||||||||||||  ||||||||||| |      
uuc  u  uauaauugu           gauu  gucau cgu GACGUUUGUAGG  CUGACUUUCgg g     g
   gu ga         aaagaacuuca    cc     c   C            --           g uagac 

>oan-mir-460 (-35.80)   [oan-miR-460:14-34] [oan-miR-460*:50-70]

u    -g     aaC UG        A A        cucg 
 gacu  uauag   C  CAUUGUAC C CUGUGUgu    c
 ||||  |||||   |  |||||||| | ||||||||     
 cuga  auauc   G  GUAACAUG G GACACacg    u
a    ag     aUA GU        C C        ucuc 

>oan-mir-1345 (-54.00)   [oan-miR-1345:29-46]

   -    cgcuc     - g     -  g   ------       C  GA       ug 
gcg ccaa     agucg g ggcgg ga gGC      CGAGGAG AG  CGUGugu  g
||| ||||     ||||| | ||||| || |||      ||||||| ||  |||||||   
cgc gguu     ucagc c ccgcc cu ccg      guuucuc uc  gcgcgcg  c
   a    ---au     g g     g  g   ccagcc       -  uc       cg 

>oan-mir-92b (-43.50)   [oan-miR-92b:71-92]

ucaaa     g  aaag   aacccc    uau            c    ga       uuu 
     agcca ga    uca      uuuc   gcagguugggau agug  aaugcug   g
     ||||| ||    |||      ||||   |||||||||||| ||||  |||||||    
     ucggu uu    agu      agag   UGUCCGACCCUG UCAC  UUAUggu   c
---ag     g  -aga   --cauu    --u            U    -G       uuc 

>oan-mir-1346 (-26.30)   [oan-miR-1346:47-64]

      u      aau       c   aaaagaugga 
gagggg caguuc   cguucuc acc          c
|||||| ||||||   ||||||| |||           
cuucuc gucGGG   GCGGGGG UGG          a
      -      --G       U   GUGacaaagg 

>oan-mir-208 (-38.30)   [oan-miR-208*:34-55] [oan-miR-208:69-90]

   -gc    ccuggaccacu    g    a           G  C AGA      cu a 
cga   uggc           uccu ugac gacAAGCUUUU GC C   UUAUAC  g c
|||   ||||           |||| |||| ||||||||||| || |   ||||||  | a
gcu   accg           agga acug uUGUUCGAAAA CG G   AAUAug  c u
   acc    -----------    g    g           A  A CAG      cc u 

>oan-mir-1420a (-34.20)   [oan-miR-1420a*:23-42] [oan-miR-1420a:60-81]

---   ucauu     u   u  ca      U   CCU     C   gg     
   gca     cccca cuu gu  AUUCGA CAG   GCACU Ucu  uugu 
   |||     ||||| ||| ||  |||||| |||   ||||| |||  ||| g
   cgu     ggggu gga ca  UAGGCU GUC   CGUGA Agg  gacu 
cgg   -----     c   -  AA      U   CUU     A   aa     

>oan-mir-1420b (-37.96)   [oan-miR-1420b*:30-49] [oan-miR-1420b:69-90]

       cacuuuuug       cu  c      A  U  GA     C   agugac 
gcguauu         cucaacu  gc uAUCCA UC GG  GCACU Ucc      u
|||||||         |||||||  || |||||| || ||  ||||| |||      u
cguauag         ggguugg  ug GUAGGU AG CC  CGUGA Agg      g
       -------ua       uu  A      C  U  AC     A   aaagaa 

>oan-mir-1420c (-40.40)   [oan-miR-1420c:65-86]

ugcucacu    ug     -   u  c       u   cuu     g   gg     
        ucac  cucaa ccu gc uauccga cgg   gcacu ucu  uuau 
        ||||  ||||| ||| || ||||||| |||   ||||| |||  ||| a
        agug  gaguu gga ug GUAGGCU GCC   CGUGA Agg  aauu 
------ac    ug     u   u  A       U   CUU     A   ga     

>oan-mir-1420d (-44.40)   [oan-miR-1420d*:32-53] [oan-miR-1420d:71-92]

uuauacu     u   uau      cu  c    UG       U   C C     ggau 
       gcuag gau   ucaacu  gc uAUC  GCCUGGU GCA U UCUga    a
       ||||| |||   ||||||  || ||||  ||||||| ||| | |||||    u
       cgguu cug   gguugg  cg GUAG  UGGACCA CGU A Agacu    a
-aaucuu     -   ---      uu  U    GU       U   U A     aaaa 

>oan-mir-1420e (-46.70)   [oan-miR-1420e:67-88]

cugaac    ucu   -         gu u      c    c      c    gaca 
      ucgu   ucg cccagcuau  c gucuga ccag uguacu ucug    u
      ||||   ||| |||||||||  | |||||| |||| |||||| ||||    a
      ggca   agu ggguuggua  G UAGGCU GGUC GCGUGA Agac    a
-gguac    -cu   a         ug C      A    A      A    gaaa 

>oan-mir-1347 (-29.30)   [oan-miR-1347:19-40]

     ga    aaaaaaaAAAGU   A    A     U  a   gg      c   gcuucc   a   gaau 
cucuu  uuua            GCA CCAG UUGGA GA guu  uuggga uuu      aag ugg    c
|||||  ||||            ||| |||| ||||| || |||  |||||| |||      ||| |||    c
gggaa  aggu            cgu gguc aaccu cu cag  aacccu aag      uuc acc    u
     -a    ------------   -    c     -  -   --      c   --accu   -   gauu 

>oan-mir-186 (-43.90)   [oan-miR-186:14-35] [oan-miR-186*:54-75]

     u                 U     U     --uu   u 
gcuca aacuuucCAAAGAAUUC CCUUU GGGCU    cua g
||||| ||||||||||||||||| ||||| |||||    |||  
cgagu uugaAGGGUUUUUUAAG GGAAA CCCga    ggu c
     -                 U     -     cacu   u 

>oan-mir-1348 (-43.84)   [oan-miR-1348:95-115]

-ga       u   u  ga g   -    ---------      uuaagaa      gu au   ag 
   acccagg cuu gu  u ucu ccuu         ggagga       agucga  c  ugc  u
   ||||||| ||| ||  | ||| ||||         ||||||       ||||||  |  |||   
   uggGUCC GGA CA  G AGA GGAA         ccuccu       ucagcu  g  acg  c
ccg       C   -  -A G   U    aaaguacau      cgcauag      ug --   ac 

>oan-mir-1349 (-44.81)   [oan-miR-1349:24-44]

    gg          a  aagcGCU        A  A  C   acu    u 
ggca  guguacugac gg       GGGCUGAG GA GC GGA   gugg g
||||  |||||||||| ||       |||||||| || || |||   ||||  
ucgu  uacgugacug cc       cccgacuc cu cg ccu   cacu c
    --          a  -------        a  c  a   ---    u 

>oan-mir-200a (-53.07)   [oan-miR-200a*:30-51] [oan-miR-200a:66-88]

     gugccaacug       -  g        -             C    uu     
gcuug          ugguccu cc ugggCAUC UUACUAGACAGUG UGGA  uggg 
|||||          ||||||| || |||||||| ||||||||||||| ||||  ||| a
cgagc          accagga gg acUUGUAG AAUGGUCUGUCAC AUcu  aucu 
     --aucuccua       a  a        C             A    -c     

>oan-mir-200b (-45.82)   [oan-miR-200b*:24-44] [oan-miR-200b:61-83]

-----ucuggauuca       ca   c    -    UG     C      ugagu 
               gggccgc  cua CAUC UUAC  GGCAG AUUGGa     u
               |||||||  ||| |||| ||||  ||||| ||||||     c
               cccggcg  ggU GUAG AAUG  CCGUC UAAUcu     u
agacaacaacgcaua       cc   A    U    GU     A      uugug 

>oan-mir-1422l (-36.90)   [oan-miR-1422l:20-41]

--   -aa    ga        UU   U     - C UC       ----  u 
  gug   cauc  ggcucggg  UCA UCAAG C G  UUUUCUu    cc a
  |||   ||||  ||||||||  ||| ||||| | |  |||||||    ||  
  cau   guag  cugagccc  agu aguuc g c  aaaagaa    gg u
ca   aua    -a        uu   u     a u uu       uaau  u 

>oan-mir-1350 (-45.80)   [oan-miR-1350:26-47]

   u   aau    agua         ---U   -   GGUCUCUCCUAGAuaggggaag 
agg ggc   gggc    uguuuccUG    CAA CUG                      c
||| |||   ||||    |||||||||    ||| |||                       
ucc ccg   cccg    acagagggc    guu ggc                      c
   -   --g    ---c         uacu   u   uuccgggaagacucgacccuca 

>oan-mir-103-2 (-43.20)   [oan-miR-103*:7-25] [oan-miR-103:63-85]

gagcu   CCGU       G      --   u  u           c   uu   u 
     gCG    CCUUGGU CUUUCa  gcu cu uacagugcugc uug  gca u
     |||    ||||||| ||||||  ||| || ||||||||||| |||  |||  
     cgu    ggaacca gaaAGU  CGG GA AUGUUACGACG Aac  ugu c
---uu   uuuu       a      AU   -  C           -   --   a 

>oan-mir-1351 (-64.30)   [oan-miR-1351:29-51]

gggccaaaccgcggu     -ugcu      GA          UGU      ---    u 
               ccucc     gggcCC  GCCCCAGCCA   CCGAGU   cucg g
               |||||     ||||||  ||||||||||   ||||||   |||| u
               ggagg     ccuggg  cggggucggu   gguucg   gagc a
---------cccggu     uuucc      --          uuc      guu    u 

>oan-mir-1420f (-47.90)   [oan-miR-1420f:69-88]

ggugaaccagcucccc  u       -u  c       c    c      cc   gaug 
                uc cccaccc  gc uaccuaa ccgg ugcacu  cug    u
                || |||||||  || ||||||| |||| ||||||  |||    a
                ag ggguggg  ug aUGGGUU GGCC GCGUGA  gac    g
----------cuacua  -       cu  a       A    A      AA   gaaa 

>oan-mir-1352 (-27.16)   [oan-miR-1352:20-37]

---------------------------------------ccggugacguuggacacauUGGAGU         G Gau   aauuuu 
                                                                GUGACAUUU U   cug      c
                                                                ||||||||| |   |||      u
                                                                cacugugag a   gac      a
gaacgcucccuaucucuuuacgaaagaucuuuuuaauagacuccguuauuuucucucgucuugu         g -au   aucgaa 

>oan-mir-1353 (-55.40)   [oan-miR-1353:72-93]

u   ccu   u         u c          uugu   cuaa      a a aa  - u 
 ggu   ggc cuggggaga g gggggccucu    gga    gggcug g g  ga c a
 |||   ||| ||||||||| | ||||||||||    |||    |||||| | |  || |  
 cca   ccg gaccucuuu c ccUCUGGAGA    CCU    CCCGAC C c  cu g u
g   -cu   c         - -          ----   UUUG      - c aa  c u 

>oan-mir-1354 (-62.20)   [oan-miR-1354:28-48] [oan-miR-1354*:120-138]

---------------------------------gcggcgggg   ag  ----g   -    ca      U   GAU  GC    Uag   ga 
                                          ggc  gg     ggg cggg  gCCUCG GAU   GU  GGCU   ggu  c
                                          |||  ||     ||| ||||  |||||| |||   ||  ||||   |||   
                                          cug  cc     ccc gccc  cggggc cug   cg  ccgg   cca  u
ugucgguCGCGCGUGCCGAGACGUCGcgggcgguucuaauga   ga  aacua   a    --      c   acu  gc    ---   gc 

>oan-mir-499 (-49.52)   [oan-miR-499:19-39] [oan-miR-499*:56-77]

agccu       --c      UA                   gcuca 
     ggggggg   agcggU  AGACUUGUAGUGAUGUUUa     u
     |||||||   ||||||  |||||||||||||||||||     c
     ccucccc   ucgUCG  UCUGAACGUCACUACAAgu     u
----u       ucu      UG                   gcacc 

>oan-mir-1355 (-40.10)   [oan-miR-1355:14-34] [oan-miR-1355*:49-69]

  -  -   c u  cU  U    UU          U  g  u 
gg ga ggc c gg  GU CCAG  UUGAGAGGAG gu ug u
|| || ||| | ||  || ||||  |||||||||| || ||  
cc cu ccg g cc  CA GGUC  AGCUCUCCUC ca ac g
  a  a   u u  aU  C    CU          U  a  g 

>oan-mir-1356 (-30.20)   [oan-miR-1356:39-57]

u    ucu   gacg   -u       -   -a     a 
 uccu   gag    cug  gcccccu gga  cuuug c
 ||||   |||    |||  ||||||| |||  ||||| a
 aggg   cuc    gac  uGGGGGA UCU  GGGAC C
a    --u   agaa   cc       G   GA     C 

>oan-mir-24 (-33.20)   [oan-miR-24*:16-35] [oan-miR-24:52-73]

-  a   a c    a  G   A         UA     ---  u 
 gg cug c cucc gU CCU CUGAGCUGA  UCAgu   uc c
 || ||| | |||| || ||| |||||||||  |||||   || g
 cc ggc g gagG CA GGA GACUUGACU  GGUca   ag u
c  -   - u    A  A   C         -C     ccc  u 

>oan-mir-27b (-69.90)   [oan-miR-27b*:30-51] [oan-miR-27b:72-92]

       c   g c      u  c                 AUUG        u  uug 
gccgucu ucu u ucucug cg ggcgcAGAGCUUAGCUG    GUGAACag ga   c
||||||| ||| | |||||| || |||||||||||||||||    |||||||| ||   u
cggcagg agg g agagac gc ccgCGUCUUGAAUCGGU    CACUUguu cu   g
       c   g a      -  -                 --GA        u  cag 

>oan-mir-23b (-46.34)   [oan-miR-23b*:25-46] [oan-miR-23b:63-84]

   au  -aucc   -     c   c   --          -  C      gugacu 
gcg  cg     cgg cccgg ugc UGG  GUUCCUGGCA UG UGAUUU      u
|||  ||     ||| ||||| ||| |||  |||||||||| || ||||||       
cgc  gc     gcc gggcc acg ACC  UAGGGACCGU AC ACUAaa      a
   -c  ccccc   a     u   c   AA          U  -      aagaga 

>oan-mir-1357 (-28.60)   [oan-miR-1357:19-37]

gu   -  u   u   -   AUUAU   AU  GA  -      c 
  ccc ag gaa ggc aag     GAG  CU  GG GCCcuc c
  ||| || ||| ||| |||     |||  ||  || ||||||  
  ggg uc cuu ccg uuc     cuc  ga  cc cggggg c
cu   c  -   -   a   -----   gu  -g  g      c 

>oan-mir-22 (-62.60)   [oan-miR-22*:36-57] [oan-miR-22:74-95]

  -    u  c   cc   ccu        ca              -     A      c  ccu 
cc cgug gc ggc  ggg   ggcugagu  cagcAGUUCUUCAG UGGCA GCUUUA gu   g
|| |||| || |||  |||   ||||||||  |||||||||||||| ||||| |||||| ||   u
gg gcac cg cug  ucc   ccgacuca  guUGUCAAGAAGUU ACCGU CGAAau cg   c
  a    -  u   --   ---        -a              G     -      -  acc 

>oan-mir-1421a (-38.60)   [oan-miR-1421a:21-42] [oan-miR-1421a*:57-78]

gaucugc     gg   uagC        U C          ggua 
       ggcac  ugu    AGGUUACA G GGUGCAGUAU    g
       |||||  |||    |||||||| | ||||||||||    u
       ccgug  aca    UCCAGUGU C CUACGUCgua    g
--cugua     ag   UGCC        U C          aaag 

>oan-mir-1421b (-44.30)   [oan-miR-1421b*:12-33] [oan-miR-1421b:49-70]

      c  uuC            G    A     a  c 
gcaugg gu   GAGGUCACAUGU GUGC GCAug uu a
|||||| ||   |||||||||||| |||| ||||| ||  
cgugcc ca   UUCCAGUGUACG CGCG Cguac aa g
      a  UCC            A    C     -  g 

>oan-mir-1421c (-43.30)   [oan-miR-1421c:14-35] [oan-miR-1421c*:49-69]

ga   g       U          C          -gg a 
  cac gugugag AGGUUACAUG GGUGCAGUAU   c g
  ||| ||||||| |||||||||| ||||||||||   |  
  gug cacauuC UCCAGUGUGC CUACGUCGua   g u
cc   a       C          C          aaa g 

>oan-mir-1421d (-47.70)   [oan-miR-1421d:27-48] [oan-miR-1421d*:66-87]

----cca      --cc       a g    c   AA        UC    C     aag 
       uugguu    augcagc c gugu UGG  GUCGCACG  AUGC GUgug   g
       ||||||    ||||||| | |||| |||  ||||||||  |||| |||||   u
       gaccga    ugcgucg g cacA GCC  CAGUGUGC  UACG cguau   g
ggauacc      ccuc       c a    U   CC        GA    A     aag 

>oan-mir-1421e (-50.30)   [oan-miR-1421e*:24-45] [oan-miR-1421e:63-84]

    u ccg        g      A       C  CU     C     acg 
cugg c   uguggcac gugugG GAGGUCA GU  CAUGC GUgug   g
|||| |   |||||||| |||||| ||||||| ||  ||||| |||||   u
ggcc g   gcgccgug cacAUC CUCUAGU CG  GUGCG cguau   u
    u ucu        a      C       A  AG     U     aau 

>oan-mir-1421f (-39.30)   [oan-miR-1421f:16-37] [oan-miR-1421f*:55-76]

        gg     U   A  UG     C    C     a gg 
acgcagug  gugug GGA GU  CACAU AUGC GUgug u  u
||||||||  ||||| ||| ||  ||||| |||| ||||| |   
ugugucgu  cacAU CCU CA  GUGUG UACG cguau a  g
        ga     C   C  GU     A    U     - ag 

>oan-mir-1421g-1 (-58.20)   [oan-miR-1421g:29-50] [oan-miR-1421g-1*:68-89]

    uc   u   aua    a     c      -         C      Aaug  gg 
ggcu  agg gac   cggc cggug gAGGGG GUCGUACGU AUGCAG    au  u
||||  ||| |||   |||| ||||| |||||| ||||||||| ||||||    ||   
ccgg  ucu cug   gucg gccac UUCCCU CAGCGUGCG UGCGUc    ua  g
    cc   -   --g    a     -      U         U      -gca  ag 

>oan-mir-1421h (-39.20)   [oan-miR-1421h:18-38] [oan-miR-1421h*:54-75]

   u    g     a cU      CUGACU         gugau 
uac gcac gugug g  GGUCAC      UGCAGUGUg     a
||| |||| ||||| |  ||||||      |||||||||      
gug cgug cacau C  CCAGUG      ACGUCACac     g
   u    a     c CU      UCCCAU         aaggu 

>oan-mir-1421i-1 (-18.20)   [oan-miR-1421i:4-24] [oan-miR-1421i-1*:40-61]

gugA     C  -UAU  CC     agu   gg 
    GGAGG CG    CU  UGCGG   gau  u
    ||||| ||    ||  |||||   |||   
    CCUCC GC    GA  GCGUC   cua  g
----     A  UUGU  -A     -GU   ag 

>oan-mir-1421j (-42.00)   [oan-miR-1421j:30-51]

u     c  -accu  --c    g     a uUA        A    A      aga 
 uccgg cg     ac   gcac gugug g   GUCACGUG GGUG AGUGUG   g
 ||||| ||     ||   |||| ||||| |   |||||||| |||| ||||||   u
 agguc gc     ug   cgug cacau c   caguguac cuac ucacac   g
g     u  cccuc  uaa    a     c cuc        a    g      aag 

>oan-mir-142 (-51.60)   [oan-miR-142:29-49] [oan-miR-142*:65-86]

cgaca  c  a ag        g               A         ---Ua   g 
     ga ag c  acagugca ucaucCAUAAAGUAG AAGCACUAC     aca c
     || || |  |||||||| ||||||||||||||| |||||||||     |||  
     cu uc g  ugucaugu aguaGGUAUUUCAUC UUUGUGAUG     ugu g
-gagg  -  - gg        g               C         Uggga   c 

>oan-let-7e (-44.11)   [oan-let-7e:30-51] [oan-let-7e*:80-101]

ggcucccaccacaguc     -   g   cU   GU         A      -  -------     c 
                cuguc cuu agg  GAG  AGUAGAUUG AUAGUU gu       ggggu a
                ||||| ||| |||  |||  ||||||||| |||||| ||       |||||  
                gacag gga uCC  UUC  UCAUCUAAC UAUCaa cg       cuccg c
------ccgcuugacu     c   g   -U   UG         A      u  ugugucc     g 

>oan-mir-7-2 (-54.20)   [oan-miR-7:24-46] [oan-miR-7*:66-87]

----------gcugguccug       c     U  A     A U     U      cucua  u 
                    gccgggc ccguc GG AGACU G GAUUU GUUGUu     gc g
                    ||||||| ||||| || ||||| | ||||| ||||||     || a
                    uggcccg ggcAG CC UCUGA C CUAAA CAACag     cg c
cgugccgggggcugcuccug       u     U  G     C -     -      ---ca  c 

>oan-mir-155 (-55.80)   [oan-miR-155:24-46] [oan-miR-155*:64-84]

   acgc  -u        g  c           U  U A        uuc  u 
ggg    cg  gggccgca gu gUUAAUGCUAA CG G UAGGGGUu   uc g
|||    ||  |||||||| || ||||||||||| || | ||||||||   || u
ccc    gc  cccggcgu ca CGAUUACGAUU GC C GUCCCCag   ag c
   --aa  uc        g  a           -  - C        -uc  u 

>oan-mir-1358 (-19.90)   [oan-miR-1358:42-59]

    ------g   gu       g       ugaaau  gug 
ggcu       cug  gauuccu aagcgag      gu   u
||||       |||  ||||||| |||||||      ||   a
ccgg       gac  cuaAGGG UUUGUUU      CA   u
    acagaaa   ac       -       --UAGU  Aga 

>oan-mir-26 (-53.00)   [oan-miR-26:14-35] [oan-miR-26*:49-70]

   uc  g     UU         C            c g 
ggc  cc cccgg  CAAGUAAUC AGGAUAGGCUgu g c
|||  || |||||  ||||||||| |||||||||||| |  
ccg  gg gggCU  GUUCAUUGG UCCUGUCCggca c a
   gu  a     CU         C            - c 

>oan-mir-1359 (-56.20)   [oan-miR-1359:29-49]

-------------------ggcuagaggggaguccaagauugggg         AG       -   G    --a   g   a 
                                             ggCUCCACA  CUCGGGC CCA Uucc   gcu cag a
                                             |||||||||  ||||||| ||| ||||   ||| ||| u
                                             ccggggugu  ggguucg ggu gggg   cga guc g
ccgaagaaccuaaagucgucccucucucacaacauauaagucagg         aa       u   -    aac   a   c 

>oan-mir-206 (-54.80)   [oan-miR-206*:35-55] [oan-miR-206:73-94]

   a     cccc   caa   cuc        a                CC     -   au 
agg ggccg    ggc   cug   uccgagac ACAUGCUUCUUUAUAU  CCAua ugg  u
||| |||||    |||   |||   |||||||| ||||||||||||||||  ||||| |||   
ucc ccggc    ccg   gac   gggcuuuG UGUGUGAAGGAAUGUA  GGUau guc  a
   g     ccuc   --a   --c        G                -A     c   gc 

>oan-mir-133b (-42.20)   [oan-miR-133b*:19-40] [oan-miR-133b:56-77]

   c   -----a       c        CA  C  A      U  g   g 
cgg uga      cccugcu ugGCUGGU  AA GG ACCAAG Cc ucu c
||| |||      ||||||| ||||||||  || || |||||| || ||| c
gcc gcu      ggggcga AUCGACCA  UU CC UGGUUU gg aga u
   u   acagcc       c        AC  C  C      -  -   g 

>oan-mir-190b (-58.50)   [oan-miR-190b:31-52]

---------------------------ggggcgggggagccgcugcccaccucugugU              -     --U   ac 
                                                          GAUAUGUUUGAUAU UAGGU   Guu  g
                                                          |||||||||||||| |||||   |||   
                                                          uuauacagacuaua gucca   cag  c
ccccgacuuccagcaacucccucuuccucccgugcccaucagcgggucggcgacaucc              a     cuc   au 

>oan-mir-194-1 (-35.50)   [oan-miR-194:22-43]

-gagaccaa    -gu     uaU        AA      G    uuau 
         cagu   uauca   GUAACAGC  CUCCAU UGGA    g
         ||||   |||||   ||||||||  |||||| ||||    c
         guca   guagu   cauugucg  gaggug accu    u
caucaaacg    aag     uuu        ga      -    uuag 

>oan-mir-215 (-39.50)   [oan-miR-215:30-50] [oan-miR-215*:66-87]

-----caauccaggaa   au     a     aaA  A     -   U           aua 
                gaa  ggugu cagga   UG CCUAU GAA UGACAGACagu   u
                |||  ||||| |||||   || ||||| ||| |||||||||||    
                cuu  ccgua gucuu   AC GGAUG CUU ACUGUCUguua   u
gaccgcggccucguca   --     c     gAA  C     U   U           gau 

>oan-mir-1360 (-53.50)   [oan-miR-1360:14-35]

   -a         AA          CA A     -----    ga 
ggg  cggggcaag  GGCAGUGGCA  G CAGGG     Agcu  a
|||  |||||||||  ||||||||||  | |||||     ||||   
ccc  gucccguuc  ccgucaccgu  c guccc     ucgg  g
   gg         ca          -c -     cuuag    ug 

>oan-mir-147 (-52.70)   [oan-miR-147:61-79]

cc     uc ---------          c a      u  c         aacucg  u 
  ccccg  c         cccugggaau c gcggaa ca cucugcaca      uc u
  |||||  |         |||||||||| | |||||| || |||||||||      ||  
  ggggc  g         gggacucuua g cGCCUU GU GAGGCGUGU      ag c
--     cu caccccucu          c c      C  A         -Gacca  u 

>oan-mir-153 (-59.80)   [oan-miR-153*:57-78] [oan-miR-153:96-117]

ugucugucucugccugucugucucucugucucucucucucucu    g         -             -C       -u   ac 
                                           caca cugccaguG UCAUUUUUGUGAU  UGCAGCU  agu  u
                                           |||| ||||||||| |||||||||||||  |||||||  |||   
                                           gugu gacgguuaC AGUGAAAACACUG  ACGUUga  ucg  c
----------------------------gcaggcacgucggcg    g         U             AU       cc   gu 

>oan-mir-128-1 (-22.50)   [oan-miR-128:44-64]

gcuggauucggggccgauacacggucu    --       gagu 
                           gagg  gguuuac    c
                           ||||  |||||||     
                           CUCU  CCAAGUG    U
-----------------uugacuuUUU    GG       ACAC 

>oan-mir-146b (-46.63)   [oan-miR-146b:25-46] [oan-miR-146b*:63-84]

     -caaa  c  --    u    c  A            AUA   Ugugagu 
aggcc     ug gg  ugcu ggcu UG GAACUGAAUUCC   GGC       u
|||||     || ||  |||| |||| || ||||||||||||   |||       g
uccgg     ac cc  acga ccgA AC CUUGACUUAGGG   CCG       a
     ucacg  a  ca    c    C  -            AUC   uaggagu 

>oan-mir-458 (-48.80)   [oan-miR-458*:32-51] [oan-miR-458:68-89]

  --  c    --c    ugcuc      g       CG      UC        aaa      
cc  ag gcug   uucc     ggugca auggcAG  CCAUUU  AGAGCUAU   cagua 
||  || ||||   ||||     |||||| |||||||  ||||||  ||||||||   |||| u
gg  uc cgac   aagg     ucaugu uacCGUC  GGUAAG  UCUCGAUA   guuac 
  ac  u    uaa    -----      a       AU      UU        -cc      

>oan-mir-101-1 (-45.40)   [oan-miR-101:50-71]

       cuggc                  a    gucca 
ggcugcc     ucaguuaucacagugcug ugcu     u
|||||||     |||||||||||||||||| ||||      
ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
       uagGA                  -    aaauc 

>oan-mir-449c (-43.90)   [oan-miR-449c:22-42]

----------------uccauuaa  a    c    uU   A    UUU        G   --u   a 
                        ga ugug cggu  GGC GUGC   GCUAGCUG cug   uca u
                        || |||| ||||  ||| ||||   |||||||| |||   ||| a
                        cu acac guca  ccg cacg   uggucgac gac   agu a
agguaaggaaagcgcaacccaaac  a    u    cc   -    --u        -   cuu   a 

>oan-mir-449b (-43.10)   [oan-miR-449b:22-42] [oan-miR-449b*:62-83]

    ca ua     -gu     A     U      UUUGC        uu   u 
guga  u  ccugg   caagu GGCAG GUGAUG     UGGcugcu  gaa c
||||  |  |||||   ||||| ||||| ||||||     ||||||||  |||  
uacu  g  ggauc   guUCA CCGUC CAUUGC     ACCGACga  cuu g
    ca gc     auc     -     U      ----C        --   a 

>oan-mir-449a (-49.60)   [oan-miR-449a:29-49]

---uu  -aa    cauc  ug        uuU     -               uga  au 
     ug   gugg    ug  ugcgauag   GGCAG UGUUUGUUAGCUGGU   au  u
     ||   ||||    ||  ||||||||   ||||| |||||||||||||||   ||   
     ac   cacc    au  acguuauc   ucguc acagacagucgacca   ua  u
aagcu  gag    ----  gu        cuu     g               cgg  aa 

>oan-mir-192 (-39.50)   [oan-miR-192:16-36] [oan-miR-192*:58-79]

  a   c   g g  C         -     A       ----u  u 
ag gcg aca g cu UGACCUAUG AAUUG CAGCCag     uc c
|| ||| ||| | || ||||||||| ||||| |||||||     || u
uc cgc ugu u GA ACUGGAUAC UUAAC GUCgguc     ag c
  -   u   a g  C         C     C       ucccc  u 

>oan-mir-194-2 (-48.90)   [oan-miR-194:18-39] [oan-miR-194*:54-75]

  g    --        cuU         A      G     --     
uu ugga  gcccaccc   GUAACAGCA CUCCAU UGGAa  gggu 
|| ||||  ||||||||   ||||||||| |||||| |||||  ||| c
ag gccu  uggguggg   UAUUGUCGU GAGGUG ACCuu  uccu 
  g    ac        UUC         C      -     gg     

>oan-mir-223 (-45.91)   [oan-miR-223*:34-56] [oan-miR-223:77-98]

    c  --c    ccacacc   g    g    cC U                --G UG   -  u 
gcga ca   guga       gca ugcc cgcu  G GUAUUUGACAAGCUGA   U  gac ac c
|||| ||   ||||       ||| |||| ||||  | ||||||||||||||||   |  ||| || c
cguu gu   cacu       cgu acgg guga  C CAUAAACUGUUUGACU   a  uug ug g
    u  acc    -------   -    a    AU C                GUg gu   g  u 

>oan-mir-1361 (-30.94)   [oan-miR-1361*:8-29] [oan-miR-1361:50-71]

u    aa       G    AUUA   C    gccaac 
 ggga  UGUGGUU CCCA    GUC CUgu      a
 ||||  ||||||| ||||    ||| ||||       
 cccu  AUACCAA GGGU    CAG gaca      a
a    CG       A    GAUC   U    aaaaga 

>oan-mir-1362 (-52.80)   [oan-miR-1362:27-47] [oan-miR-1362*:65-85]

-------------------------cgacuggcu   a  --     gga    --A     -   A C    A   aa    u 
                                  ucu gg  cggcc   gucU   CCCCG CCA C GGAC GGA  ggcg g
                                  ||| ||  |||||   ||||   ||||| ||| | |||| |||  |||| a
                                  aga cc  gccgg   cgga   GGGGC GGU G CCUG Ccu  ucgc a
gcuuacaccgauugcacccccagccaccccacag   -  aa     --a    GCA     A   C A    A   --    g 

>oan-mir-1363 (-66.50)   [oan-miR-1363:31-52] [oan-miR-1363*:70-91]

     ------     c   -ua       a     c  G        -AA     G   cag  a 
gagac      agagc ggg   ugggcag gggac GA GGCCCCGG   CUCGA CCG   cg g
|||||      ||||| |||   ||||||| ||||| || ||||||||   ||||| |||   || a
cucug      ucuug ucc   gccuguc uccuG CU UCGGGGUC   GAGCU Ggc   gc u
     aguagg     c   ugg       g     C  G        CCC     -   cca  c 

>oan-mir-1364 (-42.50)   [oan-miR-1364:52-74]

     -    g gg         --  cc      c  -c  u 
agcag cccg c  cagagaggg  gg  ggaacc gg  uc c
||||| |||| |  |||||||||  ||  |||||| ||  ||  
ucguu gggC G  GUUUCUCCC  CC  CCUUgg cc  ag c
     u    - AA         UU  CA      c  uc  u 

>oan-mir-1365 (-37.70)   [oan-miR-1365:31-52] [oan-miR-1365*:70-89]

---------acuagaaga   c  g     au      g  C      C ACC    -     
                  cag ug agugc  ggcacu UA UGGGCA C   UGUA UGCA 
                  ||| || |||||  |||||| || |||||| |   |||| ||| g
                  guc au uCACG  CCGUGA GU AUCCgu g   auau acga 
ugucuucaacuaccacga   -  g     AU      G  C      a auc    u     

>oan-mir-1366 (-35.30)   [oan-miR-1366:92-114]

gac    -          -ca   ca  ucccccacagaguugaagccacccccuucu 
   ccag agaggaguuc   agc  ca                              c
   |||| ||||||||||   |||  ||                               
   GGUC UCUCCUCGAG   UCG  gu                              a
-cU    G          AUA   Uc  caccgaagugcacucggucccuacucuccc 

>oan-mir-1367 (-36.80)   [oan-miR-1367*:38-56] [oan-miR-1367:89-110]

uacaacggguggaguauuccgagcuaacaauaguuuuAU          GA  CCG        aca      ag     
                                       GGUAGAGGUC  GU   uuuuucug   uaacau  cgag 
                                       ||||||||||  ||   ||||||||   ||||||  ||| g
                                       ucaUUUUCAG  CA   AAGAAGGC   GUUgug  guuu 
----------------guguuguuuaucgagucgguucu          AC  ---        ---      -g     

>oan-mir-1368 (-22.40)   [oan-miR-1368:7-27]

gaaauuCC       -A  UUA       c   caucucccauuugucaccuauguggagaau 
        UGAAUGU  AU   GUGGCAg uau                              c
        |||||||  ||   ||||||| |||                              u
        auuuacg  ug   cauuguc gug                              u
-----cua       ag  uua       a   uuauaaacaugcaugaauaggaaacauaag 

>oan-mir-1369 (-49.53)   [oan-miR-1369:99-116]

  agga    g  -gu      -agc      -    ggga      acgagguggagaaa   aggucugggc 
cc    ucca cu   cuccac    ucgccc cucc    cuuauu              ugc          c
||    |||| ||   ||||||    |||||| ||||    ||||||              |||          a
gg    aggu ga   ggggug    agugGG GAGG    GAGUGG              acg          g
  agag    a  agu      agua      A    -GAG      -GUggagaaguagg   augcagaggc 

>oan-mir-1370 (-21.00)   [oan-miR-1370:68-85]

ugu           -    aagguaagaaucaccagaauucag 
   ugauuuuuauu uugg                        u
   ||||||||||| ||||                        u
   ACUAAAAGUAG AGCC                        u
-au           G    AGuugugagauaaguuaaguugua 

>oan-mir-1371 (-24.85)   [oan-miR-1371:30-47]

    uuuag   -aaa       --aaacuauUA    AGG    -     agag  g aagauagaagucuuagga 
ugac     aug    ggcagua           GAUG   ACUC UGAGA    ga g                  c
||||     |||    |||||||           ||||   |||| |||||    || |                   
auug     uac    uugucgu           uuac   ugag acuuu    cu c                  a
    -uuua   auag       aaaccucaaaa    -aa    u     --ga  g guacugacagcaaaacag 

>oan-mir-30f (-27.60)   [oan-miR-30f:30-51]

    -    --        cu  uga   -    GUA    --    -------C     CG   a 
gacu aagc  guaaagac  cu   acu gacU   AACA  UCCU        CCCUC  CUg a
|||| ||||  ||||||||  ||   ||| ||||   ||||  ||||        |||||  ||| g
uuga uuug  uauuuuug  ga   uga uuga   uugu  aggg        gggag  gac u
    c    ga        -u  -ua   g    -ug    aa    cgaaacua     -a   u 

>oan-let-7g (-42.90)   [oan-let-7g:8-29] [oan-let-7g*:65-84]

-   a   U        A            ucagg    a a     a 
 ucc ggc GAGGUAGU GUUUGUACAGUU     gucu c auacc c
 ||| ||| |||||||| ||||||||||||     |||| | |||||  
 ggg ccG UUCCGUCA CGGACAUGUCaa     uaga g uaugg c
a   a   -        C            -----    g a     c 

>oan-mir-1372 (-43.40)   [oan-miR-1372:49-70]

         cu                 g     a   a 
ccagaacuu  gaaauuccuuuacaugc cuaua uau g
|||||||||  ||||||||||||||||| ||||| |||  
ggucuugaa  CUUUAGGGAAAUGUACG GAUau aua u
         aC                 A     a   a 

>oan-mir-33b (-35.20)   [oan-miR-33-5p:14-32] [oan-miR-33b-3p:54-73]

  u  c a    c         A UU        cguu    c 
gu gg c cugu GUGCAUUGU G  GCAUUGca    ccgg a
|| || | |||| ||||||||| |  ||||||||    |||| g
cg cc g gaca UACGUGACA C  UGUAACgu    gguc u
  c  a a    U         C CU        ----    a 

>oan-mir-30d (-45.04)   [oan-miR-30d:29-51] [oan-miR-30d*:69-90]

---------------guuagaaauugcaga    -   u    cU         CCC           guaaaa 
                              gaaa guc gugg  GUAAACAUC   GACUGGAAGCu      u
                              |||| ||| ||||  |||||||||   |||||||||||       
                              cuuu cgg cacC  CGUUUGUAG   CUGACUUUCga      a
cggucuuuucccuuugcccaccuacugaga    a   u    AU         --A           acuucc 

>oan-mir-30b (-52.90)   [oan-miR-30b:29-50] [oan-miR-30b*:67-86]

     cg  aaaa      u  a   caU          UA A         gacc 
ccggc  gc    ccgagu cg guu   GUAAACAUCC  C CUCAGCUgu    c
|||||  ||    |||||| || |||   ||||||||||  | |||||||||     
ggccg  cg    gguuca gc caa   CGUUUGUAGG  G GGGUCggcg    a
     -a  ccaa      -  -   cuU          GG A         accc 

>oan-mir-184 (-44.40)   [oan-miR-184:79-100]

ucccagaaggcagacgacguccag     auca   cu        c      a c     uuucu   u 
                        ggccc    cgu  cuuuauca uuuucc g ccagc     ggu c
                        |||||    |||  |||||||| |||||| | |||||     |||  
                        cuggg    gca  GGAAUAGU AAGAGG C GGUug     ccg u
----agggccuccuacgaggacgg     ----   UG        U      - A     -----   a 

>oan-mir-100 (-32.90)   [oan-miR-100:14-35] [oan-miR-100*:49-69]

   ug u c    A   CG    UC   A      g  au 
gcc  u g caca ACC  UAGA  CGA CUUGUG ug  a
|||  | | |||| |||  ||||  ||| |||||| ||   
cgg  g c gugU UGG  AUCU  GUU GAACac ac  u
   gu u u    A   AU    GU   C      -  cu 

>oan-mir-125 (-35.30)   [oan-miR-125:29-50] [oan-miR-125*:69-89]

aaggaauuacuugcu    cc   u  -a    U    C           Aug  ucc 
               gcgc  cuc ca  UCCC GAGA CCUAACUUGUG   uu   c
               ||||  ||| ||  |||| |||| |||||||||||   ||    
               cgug  gag gu  AGGG UUCU GGAUUGGGCAc   aa   g
------------uuc    uu   u  CG    -    U           cua  uuu 

>oan-mir-15b (-42.20)   [oan-miR-15b:31-51] [oan-miR-15b*:69-89]

aauccug     ----     --------       cug   U       C  C          ---   u 
       caugu    ggagg        ccuugga   cua AGCAGCA AU AUGGUUUGCa   ugg a
       |||||    |||||        |||||||   ||| ||||||| || ||||||||||   ||| u
       guaca    uuucc        ggaauuu   gaU UCGUCGU UA UACUAAGCgu   acc a
uuauucg     gaac     aaagaaaa       aaa   U       U  U          aga   g 

>oan-mir-16b (-44.40)   [oan-miR-16b:21-42] [oan-miR-16b*:59-78]

   -   -ua           cU         UA        U  ag   a 
cug aca   cuuauuacgcu  AGCAGCACG  AAUAUUGG Gu  uga g
||| |||   |||||||||||  |||||||||  |||||||| ||  |||  
gac ugu   ggauagugcga  UCGUCGUGU  UUAUAACC ca  auu u
   g   uag           uu         UA        C  -a   c 

>oan-mir-1373 (-30.30)   [oan-miR-1373:16-37]

       agc     A C           AA     A 
gugcucg   gguac G CGAAUGAAUGA  GUGGG u
|||||||   ||||| | |||||||||||  ||||| u
cgcgagc   uuaug c gcuuacuuacu  uacuu c
       cau     g a           --     g 

>oan-mir-1374 (-45.90)   [oan-miR-1374:21-41]

   u    ga u  u    c  U              CUGUugcugcuuc 
agg gccu  g gg cagc UG UUCCUGGGGCUUCC             c
||| ||||  | || |||| || ||||||||||||||             a
ucc uggg  c cc gucg gc agggaccuugaggg             g
   -    uc c  c    u  u              uaccacuggguuu 

>oan-mir-222b (-39.90)   [oan-miR-222b*:26-46] [oan-miR-222b:69-91]

caaa   g   ----g       a   ucU          UG -     GAu    -  gaca 
    aga agu     gaugcua ucg   GCUCAGUAGU  G UGUAG   cugu cu    u
    ||| |||     ||||||| |||   ||||||||||  | |||||   |||| ||     
    ucu uca     cuacgau agc   UGGGUCAUUA  C ACAUC   GAca ga    g
gccg   -   aacaa       -   cAC          GU U     ---    a  auua 

>oan-mir-181c (-31.86)   [oan-miR-181c:19-41] [oan-miR-181c*:60-80]

--    gaaa       aucAA       UA   U         gugaua 
  uguu    agucaca     CAUUCAU  CUG CGGUGGGUu      a
  ||||    |||||||     |||||||  ||| |||||||||      a
  acgg    ucggugu     GUAAGUA  GAC GCCACUCaa      u
gu    ---a       -cACC       --   C         aaaaag 

>oan-mir-23a (-45.90)   [oan-miR-23a*:15-36] [oan-miR-23a:53-74]

u        cg cu GG        UG   C      cu  u 
 gccgccgg  g  G  GUUCCUGG  AUG GAUUUu  ug g
 ||||||||  |  |  ||||||||  ||| ||||||  ||  
 cggcgguc  C  C  UAGGGACC  UAC CUAaaa  gc c
g        aA -- UU        GU   A      cc  u 

>oan-mir-27a (-43.70)   [oan-miR-27a*:14-36] [oan-miR-27a:53-73]

     -  c  a  A          GGC         gu   u 
ggucc gg gg gc GGGCUUAGCU   CUGUGAACA  uag u
||||| || || || ||||||||||   |||||||||  |||  
ccggg cc cc CG CUUGAAUCGG   GACACUUgu  guc c
     a  u  c  C          --U         gc   c 

>oan-mir-1375 (-49.10)   [oan-miR-1375:30-51] [oan-miR-1375*:64-84]

-----ggauggccauucugcugcugcagcuac   G    C     G        C   g 
                                ucU CUUC UGUUG GCUUCCUG ggg a
                                ||| |||| ||||| |||||||| ||| g
                                AGA GAAG ACGAC CGAGGGAc cuu a
ccugccgccgccacugccgucguccucgacua   -    A     G        -   g 

>oan-mir-1421k-1 (-57.26)   [oan-miR-1421k:29-50] [oan-miR-1421k-1*:68-88]

    -    - --u  cc      a       AA        C           guagua 
gauc ccgg c   ga  uacggc uggugug  CAGGUUAC UGUGGUGCAGU      g
|||| |||| |   ||  |||||| |||||||  |||||||| |||||||||||      u
uuag gguc g   cu  gugccg gccacaC  GUCCAGUG GUACUACGUcg      g
    a    u ccu  cu      c       CC        U           aaaaag 

>oan-mir-1421l-1 (-40.40)   [oan-miR-1421l:19-40] [oan-miR-1421l-1*:58-78]

gauc   c   gg     A         U  A U       gg  ag 
    uac gca  gugug AGUGGUCAC UG G UGCAGUg  gu  u
    ||| |||  ||||| ||||||||| || | |||||||  ||   
    gug cgu  cacaU UCGCCAGUG AC C AUGUcgc  ca  g
--cu   c   ga     C         U  C U       -a  ag 

>oan-mir-1419a (-41.40)   [oan-miR-1419a*:20-41] [oan-miR-1419a:57-78]

--- ag      ugu  c  a A    C   A    GC      -u  ua 
   g  ugaugg   ca gc c GUGC GGG GGUG  AUCAGG  gc  a
   |  ||||||   || || | |||| ||| ||||  ||||||  ||   
   c  acuacc   gu cg G UACG CCC CUAC  UAGUcc  ug  c
cca ga      --u  a  C C    A   A    UA      uu  cu 

>oan-mir-1421m (-52.70)   [oan-miR-1421m:34-55] [oan-miR-1421m*:74-95]

ucca  uu  c   u  caua    a g     A             C      Agu    g 
    gg  cc gaa ga    cggc c gugug GGACGUCGUACGU AUGCAG   ugau g
    ||  || ||| ||    |||| | ||||| ||||||||||||| ||||||   |||| c
    cc  gg cuu cu    gucg g cacAU CCUGCAGCGUGCG UACGUu   auua g
-aga  --  u   u  --cg    c a     C             U      -gu    g 

>oan-mir-1421n-1 (-48.40)   [oan-miR-1421n:27-48] [oan-miR-1421n-1*:64-84]

u     - u  ucu  -  -   g     A  U         A U      gcg    g 
 uccag c ga   ac ca cau gugug GG GGUCACAUG G UGCAGU   auau g
 ||||| | ||   || || ||| ||||| || ||||||||| | ||||||   ||||  
 agguc g cu   ug gu gug cacau CC CCAGUGUGC C ACGUCG   uaua g
g     u c  cuc  u  c   g     c  U         C U      ---    a 

>oan-mir-1421o (-35.70)   [oan-miR-1421o:28-49] [oan-miR-1421o*:61-82]

     u   uuaaugcacg     a a       A  A   A       aug 
gcagc gcc          gugug g UGGUCAC UG GGU CAGUGUG   g
||||| |||          ||||| | ||||||| || ||| |||||||   u
ugucg cgg          uacau C ACUAGUG AC CUA GUCACac   g
     -   ----------     c C       A  C   C       aag 

>oan-mir-1421p-1 (-34.30)   [oan-miR-1421p:4-25] [oan-miR-1421p*:43-64]

   A           -  C      Agu   g 
gug GGGGGCCGUAC CU AUGCAG   guu g
||| ||||||||||| || ||||||   ||| u
cAC CCUCCGGCGUG GA UACGUc   uaa g
   C           U  -      cuu   g 

>oan-mir-1421q (-47.50)   [oan-miR-1421q:27-48] [oan-miR-1421q*:66-87]

u   -a  --u   cua  -u   g     A         U  A U       gg  ag 
 ucc  gc   gau   cc  cac gugug GGUGGUCGC UG G UGCAGUg  gu  u
 |||  ||   |||   ||  ||| ||||| ||||||||| || | |||||||  ||   
 agg  ug   cua   gg  gug cacAU CCACCAGUG AC C ACGUcac  ca  g
g   ac  ucu   -cg  cc   a     C         U  C U       -a  ag 

>oan-mir-1421r (-65.06)   [oan-miR-1421r:29-50] [oan-miR-1421r*:68-89]

--ga   c   --u  cc              AA        U           guggua 
    ucc ggc   ga  uacggcauggugug  CAGGUUAC UGUGGUGCAGU      g
    ||| |||   ||  ||||||||||||||  |||||||| |||||||||||      u
    agg ccg   cu  gugccguaccacAC  GUCCAGUG GCAUUACGUcg      g
uuag   u   ccu  cu              CC        U           aaaaag 

>oan-mir-1421s (-45.40)   [oan-miR-1421s:21-42] [oan-miR-1421s*:60-80]

----c    cuacc    g     A         U  A U       gg  ag 
     ugau     gcac gugug GGUGGUCAC UG G UGCAGUg  gu  u
     ||||     |||| ||||| ||||||||| || | |||||||  ||   
     acug     cgug cacaU CCGCCAGUG AC C ACGUcgc  ca  g
gacgu    --uac    a     C         U  C U       -a  ag 

>oan-mir-1421t (-53.20)   [oan-miR-1421t:28-49] [oan-miR-1421t*:65-85]

----auuccaucugacu   a  a       AAC      A              ggua 
                 uac gc cggugug   AGGUUA AUGUGGUGCAGUgu    g
                 ||| || |||||||   |||||| ||||||||||||||    u
                 gug cg gccacac   UCCAGU UGCACUACGUCGca    g
uagaggucugccucucu   c  c       cCC      G              aaag 

>oan-mir-1421n-2 (-49.40)   [oan-miR-1421n:19-40] [oan-miR-1421n-2*:58-78]

   cu  c    g     A            A U      a g  ag 
gac  ac gcac gugug GGUGGUCACAUG G UGCAGU g gu  u
|||  || |||| ||||| |||||||||||| | |||||| | ||   
cug  ug cgug cacaU CCGCCAGUGUAC C ACGUca c ca  g
   --  c    a     C            C U      - g  ag 

>oan-mir-1421u (-58.10)   [oan-miR-1421u:29-50] [oan-miR-1421u*:29-50]

ggcc    - u   aua      g     A  U        -  C      Agug  gg 
    ccag g gac   cagcau gugug GG GGCCGUAC CU AUGCAG    au  c
    |||| | |||   |||||| ||||| || |||||||| || ||||||    ||   
    gguc c cug   gucgug cacac cc ccggcgug ga uacguc    ua  g
--cu    u u   --g      a     c  u        u  -      -gua  ag 

>oan-mir-150 (-62.59)   [oan-miR-150:18-39] [oan-miR-150*:53-75]

   ---c       g            -AC           AGcauaa 
cgc    ccucggc cccccUCUCCCA   CCUUGUACCAG       a
|||    ||||||| ||||||||||||   |||||||||||        
gcg    ggggccg ggggGAGAGGGU   GGGGCAUGGUC       c
   cccc       a            GCC           Cccaagu 

>oan-mir-1422j (-38.45)   [oan-miR-1422j*:38-59] [oan-miR-1422j:79-99]

     -ggccag   gaa       u   auucugguu          -    AA      uuacaug 
agcuu       aua   ugaccgu aug         UCAAUCCAGA GCAG  UUUUCU       u
|||||       |||   ||||||| |||         |||||||||| ||||  ||||||       a
ucgag       uau   acuggua uAC         AGUUAGGUCU CGUC  AAAAga       g
     acucaca   aag       c   ---------          A    --      ucuaaaa 

>oan-mir-1422d (-31.60)   [oan-miR-1422d:64-85] [oan-miR-1422d*:64-85]

  -a    cc  c      -----     u   u    u     u      u    gua 
gg  cuga  au gugauu     cugau uca ucca gcaag guuuuc auau   u
||  ||||  || ||||||     ||||| ||| |||| ||||| |||||| ||||   a
cc  gacu  ua uauuaa     gacua GGU AGGU UGUUC CAAAAG uaua   g
  ga    cu  -      cguau     C   U    U     -      U    aua 

>oan-mir-590 (-43.64)   [oan-miR-590*:31-52] [oan-miR-590:70-90]

----uuuagaaacaa  cuaagc        a  G                     uaucgu 
               gc      caaucaga au AGCUUAUCCAUAAAAGUACAG      c
               ||      |||||||| || |||||||||||||||||||||       
               cg      guuagucu UG UCGAAUAGGUAUUUUCAUguc      a
aacuccucugaacaa  cacaaa        c  A                     caaaug 

>oan-mir-130a (-58.30)   [oan-miR-130a:30-49]

      ucc  uccuuc   -   g             -UC      UG  a   ucu  g 
gcccgg   ug      gcu ccc gccggAGCUCUUU   ACAUUG  CU cug   gc c
||||||   ||      ||| ||| |||||||||||||   ||||||  || |||   ||  
ugggcc   ac      cga ggg cggcuucggggaa   uguaac  ga gau   ug c
      ucu  caucgu   c   g             uaa      gu  c   cac  c 

>oan-mir-1422m (-36.14)   [oan-miR-1422m:26-47] [oan-miR-1422m*:61-82]

    acugcua      u   u            A  U         caua 
agug       ugauuc agu ucaUUCAAGGCA GU UUUUCUUGA    c
||||       |||||| ||| |||||||||||| || |||||||||    a
ucau       acuggg uca AGUAAGUUCUGU CA AAAAGGAcu    a
    auauuag      u   u            -  U         aaua 

>oan-mir-1422n (-37.20)   [oan-miR-1422n*:19-39] [oan-miR-1422n:56-78]

----------ccauc           u  CU        AA    U   ug    aa 
               cugauucuggu uC  UCAAGGCA  GGUU UCU  agau  u
               ||||||||||| ||  ||||||||  |||| |||  ||||  g
               gacugggacca AG  AGUUCUGU  CCAA AGA  Ucua  a
ggagaaucaauauua           U  UU        -C    C   --    gu 

>oan-mir-1422o (-36.20)   [oan-miR-1422o*:20-42] [oan-miR-1422o:54-75]

aauca      ug                 U       U   auu 
     ugauuc  gugucaUACAAGACAUA GUUUUCU GAU   c
     ||||||  ||||||||||||||||| ||||||| |||   a
     acugag  cauaGUGUGUUUUGUAU CAAAAGG Cua   c
-uaua      --                 -       U   aua 

>oan-mir-1376 (-33.10)   [oan-miR-1376*:24-44] [oan-miR-1376:59-79]

gacuccuuaa     c  u  a  -         -ACU      C   uuu 
          cagug cc gc gG CUCAGCAGC    CUUUCU Aau   u
          ||||| || || || |||||||||    |||||| |||   u
          guuac gg ug cc GAGUUGUCG    GAAAGA uua   a
---cuaguca     a  u  -  A         GGUU      U   uca 

>oan-mir-1377 (-54.40)   [oan-miR-1377:30-51]

      c   gaguac       u  c  C        C             a    ua 
ucccgg guu      ggugcuc gc ca AGUAAGUG UUAAUAAGGAAUa ugac  c
|||||| |||      ||||||| || || |||||||| ||||||||||||| ||||  u
aggguc cga      ccgcggg cg gu ucauucgc aauuauuucuugu auug  c
      a   aguuua       c  u  a        a             -    uu 

>oan-mir-34 (-31.60)   [oan-miR-34:21-43] [oan-miR-34*:54-75]

u   cauca    ag     A   A    A     C      Cuau 
 ugc     gucu  uuacu GGC GUGU GUUAG UGAUUG    u
 |||     ||||  ||||| ||| |||| ||||| ||||||     
 acg     caga  aauGG CCG CACA CGAUC ACUAAc    a
a   ---uc    aa     A   A    C     -      caca 

>oan-mir-1378 (-66.90)   [oan-miR-1378:14-35]

  uu  --   -   g  AGU     - U      -   Ag  u  g  gggaua  g      a 
gu  cc  ccc cgg GA   GCUGG G GUUUGG GUG  gc cc cc      cc cggccc c
||  ||  ||| ||| ||   ||||| | |||||| |||  || || ||      || |||||| g
ca  gg  ggg gcc cu   cgacc c caggcc cgc  cg gg gg      gg gccggg u
  gg  ac   a   g  ---     g -      a   ga  c  g  --agga  g      g 

>oan-mir-31 (-50.70)   [oan-miR-31:17-39] [oan-miR-31*:53-74]

-----------------------------------------------cucagagcuggagagaA     G             -U   gag 
                                                                GGCAA AUGUUGGCAUAGC  GUu   u
                                                                ||||| |||||||||||||  |||    
                                                                CUGUU UACAGCCGUAUCG  caa   u
gagucauuugucuucucuaucccucuuaauuucgaccgguaccgacgacuaucuguucuuucUA     G             Uc   gaa 

>oan-mir-124 (-33.12)   [oan-miR-124*:18-39] [oan-miR-124:57-77]

cacua   cu u    cC        A   GA        uaaau 
     ggc  g cucu  GUGUUCAC GCG  CCUUGAUu     u
     |||  | ||||  |||||||| |||  ||||||||     u
     ccg  c gaga  CGUAAGUG CGC  GGAAUuaa     g
-gaaa   ac c    AC        G   AC        cacau 

>oan-mir-1379 (-79.30)   [oan-miR-1379:69-90]

u    a    cu   a        u       gg      - c     a a   g uuc 
 cccg gcgu  ggu cggcgcuc gcccgcg  aggcgc c gucug c ccg u   u
 |||| ||||  ||| |||||||| |||||||  |||||| | ||||| | ||| |    
 gggc cgca  cca gccgcgag cggGUGC  UCCGCG G CGGGC G ggc a   u
g    -    ac   c        c       AA      A U     - C   g cuc 

>oan-mir-1380 (-45.40)   [oan-miR-1380*:25-47] [oan-miR-1380:63-83]

ugaugcagugaucacca              U    U   C    GUg   a 
                 ccuugucACAUCCC UCUG CUG ACCU   ggg a
                 |||||||||||||| |||| ||| ||||   ||| a
                 ggaacAGUGUGGGG GGAC GAU UGga   uuc a
--acuaagaaagcugaa              U    U   U    --a   u 

>oan-mir-107 (-33.60)   [oan-miR-107*:16-36] [oan-miR-107:53-74]

-c      uu     --c    U  U           C   u   a 
  uucucu  gcuuu   AGCU CU UACAGUGUUGC Uug ggc u
  ||||||  |||||   |||| || ||||||||||| ||| ||| g
  gagaga  cgaaa   UCGG GA AUGUUACGACG Aac uug g
gc      uc     CUA    -  C           -   -   a 

>oan-mir-1381 (-45.86)   [oan-miR-1381*:17-40] [oan-miR-1381:58-78]

-u       --       cUC      CC    U   GA    uccccu 
  uuccagu  ggguugc   CCUCGC  CCUC CCG  GCCG      c
  |||||||  |||||||   ||||||  |||| |||  ||||      u
  aaggucg  cucgacg   GGAGCG  GGAG GGC  UGgc      g
au       gg       CUU      UU    -   -A    cacuca 

>oan-mir-10a (-36.00)   [oan-miR-10a:28-49] [oan-miR-10a*:69-89]

      -   ----a   --c    uu        A    G     C          -ua g a 
aaagaa gau     ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUg   a g g
|||||| |||     |||   ||||  |||||||| |||| ||||| ||||||||||   | | u
uuuuuu cug     aca   acag  gauguaUA GGGG AUCUA GCUUAAACac   u c u
      a   gccuc   aau    uu        A    -     U          ugg g u 

>oan-mir-1382 (-67.31)   [oan-miR-1382:101-118]

gacg     -u --g   -g   g     ag  au     ggaga  g       -  a  g   -------         g 
    guacc  g   gag  ggg cgcgg  gg  cugug     gg ugcggcc gc ag acu       ggugucccg g
    |||||  |   |||  ||| |||||  ||  |||||     || ||||||| || || |||       |||||||||  
    cgugg  c   cuc  cuc gcguc  cC  GACGU     CU GUGCCGg cg uu uga       ucgcggggc a
ccaa     uu aga   ga   g     -g  GG     ----G  G       a  g  g   gcuuacu         c 

>oan-mir-126 (-43.90)   [oan-miR-126*:29-49] [oan-miR-126:66-87]

gaa  -a      aca  ug  aacu  c           U       C cug   c 
   gc  ucagug   gc  gc    gc CAUUAUUACUU UGGUACG G   uga g
   ||  ||||||   ||  ||    || ||||||||||| ||||||| |   |||  
   cg  ggucac   cg  cg    uG GUAAUAAUGAG GCCAUGC c   acu c
ccg  ac      -ga  gu  ---g  C           U       U -aa   u 

>oan-mir-429 (-45.70)   [oan-miR-429*:28-48] [oan-miR-429:64-85]

-c    u   -gg    u   --     gu U -          AA       cu  c 
  ggcg gga   ugcc gcu  gauug  g C UUACCAGACA  GUUAGAU  ga u
  |||| |||   |||| |||  |||||  | | ||||||||||  |||||||  ||  
  cugc ucu   acgg cga  cuaac  C G AAUGGUCUGU  UAAUcug  uu a
gu    u   aga    -   ca     UG C U          CA       cu  u 

>oan-mir-551 (-43.50)   [oan-miR-551*:19-41] [oan-miR-551:58-78]

guggc   u u      a         G      GA A   c ug a 
     ucc g ggcccc GAAAUCAAG AUGGGU  G CCU u  c c
     ||| | |||||| ||||||||| ||||||  | ||| |  |  
     agg c ucgggG CUUUGGUUC UACCCA  C Gga g  g a
-cgua   c u      A         A      -G -   a gu a 

>oan-mir-1383 (-40.50)   [oan-miR-1383:82-99]

u   -  cu     acaa  ga cc       auaau        u    ----       -ua   c 
 ucu ca  aaggc    ug  g  uuuuuuc     ggggaggg auca    gaagcca   agu c
 ||| ||  |||||    ||  |  |||||||     |||||||| ||||    |||||||   |||  
 aga gu  uuccg    ac  c  aagaaag     CCCUUCCC UGGU    uuuuggu   ucg u
a   u  ac     ---g  -g -a       -GCCC        C    Uccu       cac   g 

>oan-mir-222a (-47.90)   [oan-miR-222a*:26-47] [oan-miR-222a:64-84]

     -  cu u  u     c   auC             -     AUC   uau 
agaga gc  g ag ugccc uca   GCUCAGUAGUCAG UGUAG   cug   u
||||| ||  | || ||||| |||   ||||||||||||| |||||   |||   c
ucucu cg  c uc auggg agu   UGGGUCAUCGGUC ACAUC   gac   u
     u  au u  c     -   cuc             U     GAc   uaa 

>oan-mir-221 (-38.20)   [oan-miR-221*:19-39] [oan-miR-221:59-80]

       uuga   a    -  UG   U         AAUu    auu  u 
uucaggu    ggc ugaA CC  GCA ACAAUGUAG    cugu   ug u
|||||||    ||| |||| ||  ||| |||||||||    ||||   || a
aggucca    ucg acUU GG  CGU UGUUACAUC    GAca   ac a
       ----   a    U  GU   C         ----    ---  g 

>oan-mir-1384 (-25.40)   [oan-miR-1384:70-87]

      acc      -------a     uu   -u    uuuu      cuccauuuugagg 
cuauua   gaagca        cugcu  cuu  uucu    auugua             u
||||||   ||||||        |||||  |||  ||||    ||||||              
gguaau   cuucgu        gacgg  gAA  AAGG    UAACGU             u
      -gu      gucuuuga     -u   CC    UUUU      uguccucuuaggu 

>oan-mir-148 (-37.90)   [oan-miR-148*:14-35] [oan-miR-148:52-73]

       u                --A    CA    -   au 
agucuuu gaggcAAAGUUCUGUG   CACU  GACU cug  u
||||||| ||||||||||||||||   ||||  |||| |||  a
ucggaga cucUGUUUCAAGACAU   GUGA  CUga gau  u
       c                CAC    --    a   ag 

>oan-mir-196b (-33.70)   [oan-miR-196b:16-36] [oan-miR-196b*:53-74]

      ucu     uU       U  C           cucc 
aacugg   gugau  AGGUAGU UC UGUUGUUGGgg    a
||||||   |||||  ||||||| || |||||||||||    c
uugacu   cauuA  UCCGUCA AG ACGACAGCucu    c
      --u     CU       C  C           cuuu 

>oan-mir-145 (-37.20)   [oan-miR-145:18-36] [oan-miR-145*:57-77]

---ccc   --     -       UC    U  C        --a   aggu 
      cca  ccgug ucucagG  CAGU UU CCAGGAAU   cau    g
      |||  ||||| |||||||  |||| || ||||||||   |||     
      ggu  gguac ggagUUC  GUCA AA GGUCCUUA   gua    c
ggcgac   uc     u       UU    U  A        ggg   gagu 

>oan-mir-143 (-45.60)   [oan-miR-143*:17-39] [oan-miR-143:52-72]

---gaug      ag   a  G         G      U  -   g 
       ucuccc  ccc AG UGCAGUGCU CAUCUC GG Uca u
       ||||||  ||| || ||||||||| |||||| || |||  
       ggaggg  ggg UC AUGUCACGA GUAGAG cu agu u
cugucga      aa   C  G         A      U  g   g 

>oan-mir-20a-1 (-45.80)   [oan-miR-20a:31-50] [oan-miR-20a-1*:67-89]

---------------------ggcucgcagaucaa    uu       c   -A                 Gca   uu 
                                   acag  cuuguag acU  AAGUGCUUAUAGUGCAG   aug  u
                                   ||||  ||||||| |||  |||||||||||||||||   |||   
                                   uguc  gaacguc UGA  UUCACGAGUAUUACGUC   ugc  a
ucgaacuaacuuucuguaugacuucaacaucaaga    --       c   AC                 Auc   ug 

>oan-mir-19a (-41.80)   [oan-miR-19a*:56-76] [oan-miR-19a:92-114]

uugggguggucuuguuuuuguuuguuuuuuuuuuuuuuuguuu    cu u                 --      ---    ag 
                                           gcag  c cuguUAGUUUUGCAUAG  UUGCAC   UAca  a
                                           ||||  | |||||||||||||||||  ||||||   ||||  a
                                           cguc  g ggcAGUCAAAACGUAUC  AACGUG   augu  g
----------------------------agcuacauccuuuau    cg u                 UA      Uug    aa 

>oan-mir-20a-2 (-41.40)   [oan-miR-20a:23-42] [oan-miR-20a-2*:59-81]

---------cugaugacagcuccuguagcacUA                 G   -  uu 
                                 AAGUGCUUAUAGUGCAG uag ug  u
                                 ||||||||||||||||| ||| ||   
                                 UUCACGAGUAUUACGUC Auc au  a
gacuuccacuucgagaugucggucguccUGAAA                 -   u  ug 

>oan-mir-92a-2 (-46.90)   [oan-miR-92a-2*:30-52] [oan-miR-92a:67-88]

    g  aaagucaaa    ---uu   ac            C   U        -uu u 
gcca ga         cccc     ucu  gcAGGUUGGGAU AGU GCAAUGCU   g u
|||| ||         ||||     |||  |||||||||||| ||| ||||||||   | u
cggu cu         gggg     gga  UGUCCGGCCCUG UCA CGUUAUgg   c g
    g  --------a    ucguu   gu            U   -        uau u 

>oan-mir-1b (-25.90)   [oan-miR-1b:41-62]

--           c    gc      ---  ag 
  acacacuucuu auau  ccauag   gg  c
  ||||||||||| ||||  ||||||   ||   
  UGUGUGAAGAA UGUA  GGUauc   cc  u
UG           U    -A      aag  cg 

>oan-mir-133c (-45.80)   [oan-miR-133c:54-75]

      c g      g       ca  a  a         ccuc 
guuggc a cugcug ggcuggu  aa gg accagaucg    u
|||||| | |||||| |||||||  || || |||||||||     
cggccg u ggcgac UCGGCCA  UU CC UGGUUUagu    c
      u g      G       AC  C  C         ccac 

>oan-mir-1385 (-53.50)   [oan-miR-1385:11-31]

           A  G     A   GA   GA     ccu 
ccgcgaggccU CC CGUCC CCU  GGG  cccgu   g
||||||||||| || ||||| |||  |||  |||||    
ggugcuccgga gg gcggg ggg  ccc  gggcg   u
           -  g     c   --   ga     ccg 

>oan-mir-191 (-50.90)   [oan-miR-191:30-51] [oan-miR-191*:72-90]

u  a  auc    a   cuu  c      C          C  AA       uu  -  c 
 gg gc   cuug cag   ga agcagg AACGGAAUCC AA  GCAGCUg  gu cu c
 || ||   |||| |||   || |||||| |||||||||| ||  |||||||  || ||  
 cc cg   gaac guc   cu ucgucc UUGCUUUAGG UU  CGUCGac  ua ga a
a  a  --a    -   ---  a      c          -  GA       cu  c  g 

>oan-mir-425 (-45.82)   [oan-miR-425:20-42] [oan-miR-425*:60-79]

     ----a    uc        AU        CAC     U  A  ggaca 
gggag     gaaa  gcuuuggA  GACACGAU   UCCCG UG gc     g
|||||     ||||  ||||||||  ||||||||   ||||| || ||     c
cccuc     cuuu  cgaaaccu  CUGUGCUA   AGGGC AC cg     c
     cgggg    cu        GC        -UA     U  -  aagaa 

>oan-mir-454 (-39.50)   [oan-miR-454*:16-38] [oan-miR-454:56-78]

-uua     uc            ---         ----   --U     g 
    ccaga  cuggaACCCUAU   CGAUAUUGU    CUC   GCUgu u
    |||||  ||||||||||||   |||||||||    |||   |||||  
    gguuu  gauuuUGGGAUA   GUUAUAACG    gag   cgaua a
aaag     gu            UUC         UGAU   ugu     a 

>oan-mir-130b (-44.60)   [oan-miR-130b*:40-60] [oan-miR-130b:81-102]

uaguacgguugaacauuuca    ug     --  u             U          A  ---a   au 
                    ugag  guauc  ug cuaguGCCCUUUU AUGUUGUACU Cu    gug  c
                    ||||  |||||  || ||||||||||||| |||||||||| ||    |||   
                    acuu  cauag  ac gguUACGGGAAAA UGUAACGUGA ga    cac  u
------------guccuucc    gu     ug  c             U          C  aaaa   gu 

>oan-mir-21 (-43.00)   [oan-miR-21:29-50] [oan-miR-21*:67-88]

aucuccac   u  -    uccua              A     A   UGAc      a 
        gac gg acca     ucggaUAGCUUAUC GACUG UGU    uguuag u
        ||| || ||||     |||||||||||||| ||||| |||    |||||| c
        cug cu uggu     aguCUGUCGGGUAG CUGAC ACA    ACgguc u
-uagccua   u  a    uuuac              -     G   ----      c 

>oan-mir-1386 (-31.50)   [oan-miR-1386:20-37]

     - c    aga     - -UCCU  C   C  --    gacuuc     c 
agguu c ggcc   guggg C     GG UGG UC  GCCA      uccau a
||||| | ||||   ||||| |     || ||| ||  ||||      |||||  
ucuaa g ccgg   cgccc g     cc acc ag  cggu      aggug c
     c c    --a     u cccuu  u   -  ca    ------     c 

>oan-mir-1387 (-13.99)   [oan-miR-1387:6-23]

-cuaau     AAA   -C      a   c   acacuacaau   u 
      GGUUU   CUU  GAAAUG gaa ggg          gcu c
      |||||   |||  |||||| ||| |||          |||  
      ucaag   gaa  uuuuac cuu ucc          cgg a
gaauag     --g   uu      -   c   ----accuuu   g 

>oan-mir-15a (-34.94)   [oan-miR-15a:21-41] [oan-miR-15a*:55-76]

     -  ---     ggguaaa UA        UA          ag u 
gaaga ca   ccuug       g  GCAGCACA  AUGGUUUGUg  u u
||||| ||   |||||       |  ||||||||  ||||||||||  |  
cuucu gu   ggaac       C  CGUCGUGU  UACCGGACau  a u
     a  cua     auaaaaA UC        UA          aa g 

>oan-mir-16a (-44.50)   [oan-miR-16a:29-50] [oan-miR-16a*:71-92]

-------------cacugugaucucauu      ag   c          -  A        C uuaag   c 
                            gucagc  uac uUAGCAGCAC GU AAUAUUGG G     acu u
                            ||||||  ||| |||||||||| || |||||||| |     ||| a
                            cagucg  aug AGUCGUCGUG CA UUAUGACC c     uga a
gugaaaacuaacagucaacaucucucau      ga   a          U  G        u ---ua   a 

>oan-mir-1388 (-40.30)   [oan-miR-1388*:19-40] [oan-miR-1388:58-79]

uca ug        g  uA  A   U U         AUGg    g g 
   g  gggggcgu uc  GG CUG C AACCUGAGA    ugau u u
   |  |||||||| ||  || ||| | |||||||||    |||| |  
   c  cuuccgca aG  CC GAC G UUGGACUCU    acug g g
aga cu        a  UA  C   U C         ---A    g a 

>oan-mir-214 (-63.72)   [oan-miR-214*:32-51] [oan-miR-214:73-94]

-u  gacu      acgga       c   u          ACA            aacau 
  gg    ggcugg     guuguca gug cUGCCUGUCU   CUUGCUGUgcag     c
  ||    ||||||     ||||||| ||| ||||||||||   ||||||||||||     c
  uc    ccgacc     caacagu cac GACGGACAGA   GGACGACAuguc     u
ag  -agu      -----       a   U          CAC            cacuc 

>oan-mir-199 (-46.20)   [oan-miR-199*:31-52] [oan-miR-199:70-90]

uagaag  u   gaga    -    c   gcC       U        C   ---U   ga 
      cg ccg    uccu gcuc guc   CCAGUGU CAGACUAC UGU    cag  c
      || |||    |||| |||| |||   ||||||| |||||||| |||    |||  a
      gc ggc    ggga cggg cag   GGUUACA GUCUGAUG ACA    guc  a
-guaaa  -   gaaa    a    u   aUU       C        -   uguu   gu 

>oan-mir-1389 (-49.20)   [oan-miR-1389:64-85]

   aau     ----ga    -    u    -     cg        a   c  agu  ug 
cgg   uggcc      uccc ggcu guuc cucgg  uuuccggc cgg ca   ga  c
|||   |||||      |||| |||| |||| |||||  |||||||| ||| ||   ||   
gcc   acugg      aggg ccgg caAG GAGCU  AAAGGUCG GUC gu   cu  g
   --g     accucg    a    u    U     -A        G   A  ---  uu 

>oan-mir-128-2 (-43.90)   [oan-miR-128*:7-27] [oan-miR-128:65-85]

ca gg    C  - UG  --   C   A          uua      aa    g gag 
  g  cUGG GA U  GA  CAG CGG AGgggggccg   cacugu  gaga u   u
  |  |||| || |  ||  ||| ||| ||||||||||   ||||||  |||| |    
  c  gacc cu g  cu  guc gcc UUUCUCUGGC   GUGACA  CUcu g   a
gg -a    -  c gu  ag   a   c          CAA      --    g acc 

>oan-mir-1390 (-42.70)   [oan-miR-1390:31-51] [oan-miR-1390*:69-90]

    a  -     c  c        a    a         UC    A        uaau 
aaua au cagug au ugaauaua aggg UAUACAGAU  GAGU UGCAUaug    a
|||| || ||||| || |||||||| |||| |||||||||  |||| ||||||||     
uuau ua guuau ua acuuauau uccC AUAUGUCUA  CUCA ACGUguau    u
    a  u     a  u        a    A         UA    C        cuca 

>oan-mir-98 (-59.10)   [oan-miR-98:31-52]

   --uaa    ----      ----ug  -         aU                 U    --------          a 
ucg     gcug    ucagug      cc caugcuggg  GAGGUAGUAAGUUGUAU GUUg        ugggguaggg u
|||     ||||    ||||||      || |||||||||  ||||||||||||||||| ||||        |||||||||| u
agc     ugau    ggucac      gg gugugaccc  uuucaucauuuaacaua caau        accccguuuu u
   caaug    ccug      uagcaa  u         -c                 u    agcgauua          c 

>oan-let-7f-2 (-51.00)   [oan-let-7f:31-52] [oan-let-7f-2*:81-101]

----gaau    ag  uu  ugu  u  u     U   GU               ----         au 
        auga  ac  gc   gc cu uggga GAG  AGUAGAUUGUAUAGU    Uuuaggguc  a
        ||||  ||  ||   || || ||||| |||  |||||||||||||||    |||||||||   
        ugcu  ug  cg   ug gg accCU UUC  UCAUCUGACAUAUCa    agguucuag  c
cuauagcc    cu  -u  --u  u  c     -   UG               auag         cc 

>oan-mir-802 (-41.00)   [oan-miR-802:18-41] [oan-miR-802*:56-76]

  uu     uc     g     A          A       -  cc 
gu  cuguu  uugca UCAGU ACAAAGAUUC UCCUUGU gu  u
||  |||||  ||||| ||||| |||||||||| ||||||| ||  g
cg  gguaa  aacgu AGUCA UGUUUCUGGG AGGGAca cg  u
  gu     uu     g     C          -       a  aa 

>oan-mir-99 (-37.92)   [oan-miR-99:24-44] [oan-miR-99*:61-82]

  g    aa     -gu       A     U   UC   U      gugaa 
gu ugau  ugcca   uggcaua ACCCG AGA  CGA CUUGUg     g
|| ||||  |||||   ||||||| ||||| |||  ||| ||||||     u
ca gcua  auggu   acuguGU UGGGU UCU  GCU GAACac     g
  g    --     gug       C     C   CC   C      auaaa 

>oan-mir-1391 (-52.60)   [oan-miR-1391*:35-54] [oan-miR-1391:74-94]

gaccccagaagg     cacg   uc  c   u      G           U   -gga     
            uuuga    ggg  uc ugc gCGCCA UAUCGGGUGGG GAu    ugaa 
            |||||    |||  || ||| |||||| ||||||||||| |||    ||| c
            aaacu    ccc  ag acg CGUGGU AUGGCCCACCC Cug    auuu 
------caggag     cuaa   uu  a   U      G           U   acgg     

>oan-mir-1392 (-63.60)   [oan-miR-1392:31-52] [oan-miR-1392*:71-92]

guaaau        uag     -a       C             A     G  cu   g 
      gcuggcuu   gggau  aacaagc GCUUCAUCAGGUG AAAUG Au  gga c
      ||||||||   |||||  ||||||| ||||||||||||| ||||| ||  |||  
      cgaccgaa   uccug  uuguuCG CGAGGUGGUCCAC UUUAC ug  ccu u
---cgu        -ca     ac       A             G     g  uc   c 

>oan-mir-383 (-47.20)   [oan-miR-383:31-52] [oan-miR-383*:73-93]

        aau  c gag    c     -c  A      AA    A        --    gu 
cgcaagag   cu g   ucac ugcuc  uC GAUCAG  GGUG UUGUGGCu  uugg  a
||||||||   || |   |||| |||||  || ||||||  |||| ||||||||  ||||  g
guguuuuc   ga c   ggug acgag  AG CUGGUC  UCAC AACACCga  aauc  c
        --c  a --a    a     aa  A      CG    -        cg    au 

>oan-mir-1393 (-67.90)   [oan-miR-1393:69-88]

      u a     u g    -             a  a    a a         gcuuu 
ggguug g uggug g augg aggggggagcagu gc gcag g aaggugacg     g
|||||| | ||||| | |||| ||||||||||||| || |||| | |||||||||      
cccagc c gucgu c ugcc ucccuccucgUCA CG CGUC C UUCCACUgc     c
      u -     - g    g             C  A    - C         gcuac 

>oan-mir-135a (-39.10)   [oan-miR-135a*:67-87] [oan-miR-135a:67-87]

ugaucaa   aaa     ucua                u            u g a 
       gau   uucac    guguuuuauggcuuuu auuccuauguga a u a
       |||   |||||    |||||||||||||||| |||||||||||| | | u
       cua   aagug    cauaaAGUACCGAAGG UAGGGAUGUAcu u a a
---acua   -aa     -uua                -            c g a 

>oan-mir-302-2 (-32.80)   [oan-miR-302*:8-28] [oan-miR-302:42-62]

--        UU          UG   U  guga 
  cuucuacU  AACAUGGAGG  CUU CU    u
  ||||||||  ||||||||||  ||| ||    u
  ggagaUGA  UUGUACCUUC  GAA ga    u
gu        UU          GU   U  aaaa 

>oan-mir-302-1 (-42.00)   [oan-miR-302:78-98]

acgugaagguaguuuguaaauuugauuucagggcucccug     u         uaa          c 
                                        ucacu aaacgugga   acuugcuuua u
                                        ||||| |||||||||   ||||||||||  
                                        agUGA UUUGUACCU   UGAAUgaaau u
--------------uguagcuucuuuaaaaccauuguggu     U         UCG          u 

>oan-mir-1394 (-82.70)   [oan-miR-1394:101-118]

ga   -a          ----     gaccgccgggggccggcgagcuccgucugguuuccgcgccg 
  ggg  gccgggcccc    gcgcc                                         c
  |||  ||||||||||    |||||                                          
  ccc  cggcccGGGG    CGCGG                                         c
-c   gc          AGCC     GGCCCcccucuuggcaccagccaauaaggagggcgcccccg 

>oan-mir-1395 (-56.90)   [oan-miR-1395:64-84]

  -   -   ----u -   g  ua        c   c         cu      -a  u 
cg cag cca     c guu cc  gccccagc gaa uggccuuuc  gggccg  ac c
|| ||| |||     | ||| ||  |||||||| ||| |||||||||  ||||||  || c
gc guc ggu     g cag gg  cggggUCG CUU AUCGGGAAG  CCUggu  ug a
  a   a   uccuu a   -  gc        C   A         -U      ag  a 

>oan-mir-1396 (-32.90)   [oan-miR-1396:101-121]

uca    ---   ---  - ga       g  auuaa      a   auuaaggguagaggagggcccaaagguggga 
   cagg   uag   ca g  uggaaua gg     ggacau uaa                               g
   ||||   |||   || |  ||||||| ||     |||||| |||                                
   gucc   auc   gu c  acuuUGU UC     UUUGUG GUU                               a
agg    cga   uca  a aa       G  ----G      A   GUCUaugcuauuauuaucauuauuugagagu 

>oan-mir-1397 (-45.33)   [oan-miR-1397:31-52] [oan-miR-1397*:67-88]

      -  ugacacacu       g       CA     AC           c  ga 
uaaguc cc         gcgaugu ugcauUG  UUGCG  GGGUUACAUCA ug  c
|||||| ||         ||||||| |||||||  |||||  ||||||||||| ||  g
auuuag gg         ugcugcg augUAGU  GACGC  CCCAAUGUAgu ac  u
      a  -uuucauac       a       AC     AA           -  ga 

>oan-mir-1398 (-40.00)   [oan-miR-1398:22-42]

------------uggcaaaa      cu   a CC     -   A  U       gga  u 
                    uccauc  cuc g  CCUUU GUC AU ACACUGC   gc a
                    ||||||  ||| |  ||||| ||| || |||||||   ||  
                    agguag  gag c  ggaga cag ug ugugacg   cg g
acuggguagaaagggcuuca      ag   c -a     u   c  u       --a  g 

>oan-mir-1399 (-21.00)   [oan-miR-1399:11-28]

------gugaaauuacUGAAUAGAUGUGAUUUGGggaaauuacaguucc    uua      a 
                                                 uugu   guaugu u
                                                 ||||   |||||| u
                                                 gaca   cguacg g
ccuuuaguaauguuaaauuuacuuuaacccucgaugaccaaucccuucc    ucc      u 

>oan-mir-30e (-46.00)   [oan-miR-30e:16-38] [oan-miR-30e*:57-78]

------ a      uu  ua            UU           -ggaa g 
      g cagucu  gc  cUGUAAACAUCC  GACUGGAAGCu     g u
      | ||||||  ||  ||||||||||||  |||||||||||     |  
      c gucgga  cg  GACAUUUGUAGG  CUGACUUUCga     c g
cugaca c      --  gC            --           ggaag c 

>oan-mir-1400 (-36.40)   [oan-miR-1400*:30-48] [oan-miR-1400:69-89]

u  cccaa  ac     c     aacag    -   CA   U     A     cug 
 gg     ag  auggg gcaug     gGAU GGA  GGG AUGGG Ggaga   c
 ||     ||  ||||| |||||     |||| |||  ||| ||||| |||||    
 cc     uc  ugccc uguAC     CCUA CCU  CCC UACuc ucuuu   a
a  ccaca  cu     c     --CUA    A   CA   -     g     cuu 

>oan-mir-1401 (-45.60)   [oan-miR-1401:22-43] [oan-miR-1401*:63-83]

   -    -u    ggaua            CA   CC       uc uucc 
gag guca  gcga     gcugUUUCUGAC  CCA  GGCCUCU  c    c
||| ||||  ||||     ||||||||||||  |||  |||||||  |    a
cuc cggu  cgcu     cggUAAAGACUG  GGU  CCGGAga  g    u
   u    uc    -----            AC   AA       uu ugac 

>oan-mir-1402 (-51.70)   [oan-miR-1402:12-29]

   ag     ---a      AAGGUGGAACUGuggcugcccgcagagugaugggaagacuccauc 
uac  acagg    GCGGAG                                             a
|||  |||||    ||||||                                              
gug  ugucc    cgucuc                                             g
   -g     agag      gacgggucccgacuccguuucgucguccucgggauagucccgguc 

>oan-mir-1403 (-63.10)   [oan-miR-1403:101-122]

-ca   -gg     ag     a   a     gacuauccugagggcgggagcugcagguguccauacccggg 
   agg   aggag  ggugc acc ggugu                                         c
   |||   |||||  ||||| ||| |||||                                         a
   ucu   uccuu  ccgcg UGG CUACA                                         c
gua   aca     gg     g   -     AGUGUGGACCUCUGcccggagacuauaaguguaaaccuggg 

>oan-mir-1404 (-33.30)   [oan-miR-1404:29-50]

cagca    g   agca       gaaaUU      A         U 
     cccu ugc    cucugua      GGGGAA AAGAAGAGU C
     |||| |||    |||||||      |||||| |||||||||  
     ggga acg    gggacgu      ccccuu uuuuuuuca A
gaaga    -   --ag       ------      c         C 

>oan-mir-1405 (-42.60)   [oan-miR-1405*:20-40] [oan-miR-1405:56-77]

---------uu  ca   ac     cuu         AU   G        u  u 
           ga  cug  uugcu   UGGCCAAUG  UGU GCUGCAcc ga u
           ||  |||  |||||   |||||||||  ||| |||||||| || c
           cu  gac  aacga   ACUGGUUAC  ACA CGACGUgg uu a
aaaauccacuc  cc   ca     aaU         CG   A        u  u 

>oan-mir-1406 (-51.10)   [oan-miR-1406:30-49] [oan-miR-1406*:70-91]

-------------------cacugguuagucucuugacauc    a g         CCA       A  c  uagu 
                                         cagg u AUUUAGGUG   GAGAGAG ag ga    c
                                         |||| | |||||||||   ||||||| || ||    u
                                         gucu A UAAAUCCAC   CUCUCUC uc cu    a
ggaccgagguagagaggggagagacuacaacgacauuguug    a G         CAC       C  -  ccac 

>oan-mir-138-1 (-50.10)   [oan-miR-138:90-112]

gacag    u  --a   ga   aca    a     gg        aaaga   gug   - uuu   cc   a 
     agcu uu   aga  ggc   gacg ccuga  cacgauac     agc   gcu c   ccg  cug c
     |||| ||   |||  |||   |||| |||||  ||||||||     |||   ||| |   |||  ||| u
     ucgg aa   ucu  ccg   cuGC GGACU  GUGUUGUG     UCG   cga g   ggu  ggc a
cuuca    c  gag   aa   ---    C     AA        ----G   --A   a --u   au   c 

>oan-mir-1407 (-38.70)   [oan-miR-1407:94-112]

gu   --cc    -  a   u  -  uu   cucua  ugu           ggacuucaugguucguguccuu 
  ggu    cggc cc uga ga gc  gca     cc   cagucggcuuu                      a
  |||    |||| || ||| || ||  |||     ||   |||||||||||                      c
  cca    gucg gg auu cu cg  cgu     GG   GUCAGUCGAGG                      c
uu   aaua    u  g   u  g  --   -AAAA  ---           AAuuugcauauuuauagguucg 

>oan-mir-10b (-36.30)   [oan-miR-10b:25-46] [oan-miR-10b*:66-85]

gaauauuauua     u        A    G     C          -ug  au 
           cguug cuauauaU CCCU UAGAA CGAAUUUGUg   gu  u
           ||||| |||||||| |||| ||||| ||||||||||   ||   
           guagc gguauaUA GGGG AUCUU GCUUAGAcac   ua  c
-cuucaaaaac     u        A    -     A          uga  ca 

>oan-mir-138-2 (-41.00)   [oan-miR-138:27-49] [oan-miR-138*:74-94]

gac  ucacuc      c     u  AG       U     UCA     acg gc  cg 
   gc      ugguau ggugc gc  CUGGUGU GUGAA   GGCCG   a  ag  a
   ||      |||||| ||||| ||  ||||||| |||||   |||||   |  ||   
   cg      accaua cuacg UG  GACCACA CACUU   UCGgc   u  uc  g
cuu  --ccuc      -     u  -G       U     -UA     cca aa  cu 

>oan-mir-217 (-35.30)   [oan-miR-217:27-49] [oan-miR-217*:64-85]

---cc    cga    uu     c c  a  C     C          U -   aau 
     gagc   guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAu   a
     ||||   ||||  ||||| | || || ||||| |||||||||| | |||    
     uucg   caaa  cuacg c uC GU ACGUA UCCUUGACUA c cug   a
guacc    -aa    -u     a u  C  U     A          C a   acu 

>oan-mir-216 (-38.02)   [oan-miR-216:30-51] [oan-miR-216*:70-89]

gaucgaca     ---------ug      aauc   u         C  G  A    --    ugcu 
        ucgga           gcugug    ggc UAAUCUCAG UG CA CUGU  GAga    a
        |||||           ||||||    ||| ||||||||| || || ||||  ||||    a
        agucu           cgacac    ucg AUUAGGGUC AC GU GACA  cucu    c
---cuaag     ccauucguuaa      -aaa   u         U  G  -    Cc    uaac 

>oan-mir-1408 (-59.01)   [oan-miR-1408:78-95]

     ca  -------           -      --g  g      -   --    ga c   uc 
gcccg  ga       guuugagcgcc uccucu   cc guccuu ccu  cgga  g gcu  g
|||||  ||       ||||||||||| ||||||   || |||||| |||  ||||  | |||   
cgggc  cu       caaacucGUGG GGGAGG   GG Caggga ggg  gccu  c cga  c
     -c  gugccgc           U      GAG  G      c   gc    ag -   cu 

>oan-mir-7-1 (-53.70)   [oan-miR-7:50-72] [oan-miR-7-1*:92-113]

gccuguagaauauauagaagauuucagu  a   u     a  u        A     A       U      --ug   a 
                            gg cgu ggucu gu cugugUGG AGACU GUGAUUU GUUGUu    uag u
                            || ||| ||||| || |||||||| ||||| ||||||| ||||||    |||  
                            cc gua ccaga ca gguAUACC UCUGA CGCUAAA CAACag    auc a
------------------caggacaucu  -   -     -  c        G     -       -      cuaa   a 

>oan-mir-1409 (-43.20)   [oan-miR-1409:14-34] [oan-miR-1409*:52-73]

   uuu        A        CUUCU       uaa  a 
ggc   gggaggcA GGGAACUU     CGCUGAa   gg a
|||   |||||||| ||||||||     |||||||   || a
ucg   cccucCGU CUCUUGAA     GCGACuu   cc u
   ucu        A        CUCAC       -ug  g 

>oan-mir-1410 (-32.80)   [oan-miR-1410:29-46]

    cc  c    uug   cccac  ca   --AC    UC    G  cu   accguu       
ggcg  cg cggc   guc     ug  GAG    GGAG  GUGA UG  gcc      ggagga 
||||  || ||||   |||     ||  |||    ||||  |||| ||  |||      ||||| a
ccgu  gc gucg   cag     ac  cuu    ccuu  cacu ac  cgg      ucuccg 
    -c  c    -ua   -----  cc   cccc    -u    g  --   -gaaau       

>oan-mir-1411 (-30.82)   [oan-miR-1411:78-95]

uua       g  u     acaaguaa      --   aca      c    -   -aug   gu u 
   agugcug ga acaua        gcagau  cag   cuuguu cugu ucu    ugg  c c
   ||||||| || |||||        ||||||  |||   |||||| |||| |||    |||  |  
   uuaugac cu uguau        cguuua  gUC   GAAUAA GAUA AGa    auc  g a
-ag       a  -     ---cuaac      uu   -AA      A    G   gaga   ug a 

>oan-mir-103-1 (-48.90)   [oan-miR-103:77-99]

cuugaacuguaaacaugug      --u -   cu       --    u  u           c   u g a 
                   gaagau   g cuc  ugcccuc  ggcu cu uacagugcugc uug u c u
                   ||||||   | |||  |||||||  |||| || ||||||||||| ||| | |  
                   cuucua   c gag  acgggAG  UCGG GA AUGUUACGACG Aac a g a
---------------gaaa      uuu a   uu       UA    -  C           -   u g u 

>oan-mir-146a (-59.30)   [oan-miR-146a:31-52] [oan-miR-146a*:72-93]

---------uucaacuuggagauuca    g      u UG        A          -   g uug 
                          guac cucagc u  AGAACUGA UUCCACGGGU Ugu a   c
                          |||| |||||| |  |||||||| |||||||||| ||| |   a
                          caug gggucg A  UCUUGACU GGGGUGCCCA aca u   a
aagaggaccuaagacgcuccugucuc    -      - GU        C          g   g cuc 

>oan-mir-1412 (-40.80)   [oan-miR-1412:59-76]

     ga         gu   cccccu   ccuca     u 
gaccc  guccuucuc  cca      cca     acggg u
|||||  |||||||||  |||      |||     ||||| u
cugGG  CGGGAGGAG  GGU      ggu     ugccc c
     AG         UG   -ucucu   -----     u 

>oan-mir-1413 (-54.10)   [oan-miR-1413:53-74]

    --           - -    a c     g c      ---c  u 
gccg  cggggcggccg g aggg c ccagc c cggcac    gc c
||||  ||||||||||| | |||| | ||||| | ||||||    || c
cggc  guccugccggc C UUCC G GGUCG G GCCGUg    ug c
    ca           G A    - A     A C      uccc  u 

>oan-let-7d (-47.10)   [oan-let-7d:24-45] [oan-let-7d*:78-99]

gaagaaacuau    u       A              C      ------   -      u 
           gggc ccuagga GAGGUAGUAGGUUG AUAGUU      uua gggcag g
           |||| ||||||| |||||||||||||| ||||||      ||| |||||| a
           uucg ggauUCU UUCCGUCGUCCAAC UAUCaa      aau cucguu u
--cauuauuau    -       -              A      uugugg   a      u 

>oan-mir-1421v (-39.20)   [oan-miR-1421v:18-39] [oan-miR-1421v*:54-75]

gac   c -   c     AAC      C               gua 
   cuc g gca gugug   AGGUUA ACGUGAUGCAGUgug   g
   ||| | ||| |||||   |||||| |||||||||||||||   u
   gag c cgu cacau   UCUAGU UGCACUACGUCGUau   g
-cu   u a   -     cCC      U               aag 

>oan-mir-1421w (-32.60)   [oan-miR-1421w*:18-37] [oan-miR-1421w:57-77]

guau   g  -   c   U         A   C    C     a gc 
    gca ca ugg gug GGAGGUUAC CAU AUGC gugug u  u
    ||| || ||| ||| ||||||||| ||| |||| ||||| |   
    cgu gu acc uaU CUUCUAGUG GUG UACG cgcau a  g
--cg   g  g   -   U         G   A    U     - ag 

>oan-mir-1419b-1 (-47.46)   [oan-miR-1419b:29-50] [oan-miR-1419b-1*:66-86]

     -   acag      ugu    ca A       GA   GU      Gugcua 
uccug ggc    ugaugg   caug  c GUGCUGG  GAU  UAUCAC      u
||||| |||    ||||||   ||||  | |||||||  |||  ||||||      c
agggc ccg    acuacc   guac  G CACGACC  CUG  AUAGUg      u
     a   -aga      --u    ac A       UA   UU      acuuac 

>oan-mir-1421x (-48.20)   [oan-miR-1421x:14-35] [oan-miR-1421x*:51-72]

          g   ------        UG            aua 
ggcacagugu agU      AGGUCACG  UGGUGCAGCAUg   a
|||||||||| |||      ||||||||  ||||||||||||   u
cugugucacg uca      UCCAGUGU  GCUACGUcguau   g
          -   cAUCCC        GU            aag 

>oan-mir-1421y-1 (-48.70)   [oan-miR-1421y:28-49]

        ugaucuau        ---    - -    G        GUACA   u         
auccaggc        ggcacagu   gugA G GAGG CACAUGUG     GUg gagcgugg 
||||||||        ||||||||   |||| | |||| ||||||||     ||| ||||||| a
uaggucug        cuguguca   cacu c cucc guguacac     uac uucguaua 
        -----uuu        ugc    u a    a        -----   -         

>oan-mir-1421z (-44.10)   [oan-miR-1421z:14-34] [oan-miR-1421z*:53-75]

    --ca       A C                      aua 
acgg    uggugug G AGGUCACGUGUGGUGCAGcgug   g
||||    ||||||| | ||||||||||||||||||||||   u
ugcu    gccaCAU C UCCAGUGUGCGCUACGUcguau   g
    ucac       C C                      aag 

>oan-mir-1419c-1 (-39.70)   [oan-miR-1419c:27-48] [oan-miR-1419c*:64-85]

   u -   acag     gu    ca A  U     A    U      ---   cu 
ucc g ggc    ugaug  caug  c GU CUGGG GAUG UAUCAC   Gug  a
||| | |||    |||||  ||||  | || ||||| |||| ||||||   |||   
agg c ccg    acuac  guac  G CA GACCC CUGC AUAGUg   uac  u
   u g   -aga     ac    aC C  C     A    U      gcu   uc 

>oan-mir-1421aa (-41.52)   [oan-miR-1421aa:19-40] [oan-miR-1421aa*:58-80]

gaccuac          -----gAAC      UG              aua 
       ggcauggugu         AGGUCA  UGUGAUGCAGUgug   g
       ||||||||||         ||||||  ||||||||||||||   u
       cugugucacg         UCCAGU  GCGCUACGUcguau   g
-------          acaCAUCCC      GU              aaa 

>oan-mir-1421ab-1 (-32.30)   [oan-miR-1421ab:4-25] [oan-miR-1421ab*:43-63]

            C    C     GA  gaug 
gugAGGAGCUCA ACGU UUGCA  gu    u
|||||||||||| |||| |||||  ||    c
caUUCCUCGAGU UGCG AACGU  ua    a
            C    U     ag  aaau 

>oan-mir-1419d (-45.40)   [oan-miR-1419d:26-46] [oan-miR-1419d*:66-86]

---gcggugaacggcgauggcaucacacCCA         -   U    -----     c 
                               GUGCUGGAG AUG CAUC     Acgug u
                               ||||||||| ||| ||||     |||||  
                               CACGACCUC UAC GUAg     ugcgc a
cggcaagguagaaagggcuaccugugcGCAC         C   U    uaccu     c 

>oan-mir-1414 (-42.80)   [oan-miR-1414:16-36] [oan-miR-1414*:54-75]

      c ca   g   G       GG UG U     -   ca 
cgcggc c  ugu aUG GGUCACA  G  G UGGCa guc  g
|||||| |  ||| ||| |||||||  |  | ||||| |||   
gugccg g  acA UAC CCAGUGU  C  C ACcgu uag  u
      c ac   G   A       GA GU U     g   ag 

>oan-mir-1421ac-1 (-52.30)   [oan-miR-1421ac:31-52] [oan-miR-1421ac*:70-92]

    --      ---cu  cc  ug       g  A     AC  AU             cua 
guga  uuccag     ga  ua  gcacagu ug GGAGG  AC  GUGGUGCAGUgug   g
||||  ||||||     ||  ||  ||||||| || |||||  ||  |||||||||||||   u
uacu  gagguc     cu  gu  uguguca AC CCUCC  UG  UACUACGUcguau   g
    ug      uaccu  cu  gu       A  C     GA  CG             aag 

>oan-mir-1421ad (-32.70)   [oan-miR-1421ad:14-35] [oan-miR-1421ad*:53-74]

     augga   --AAC       U  C           aua 
acggc     gug     AGGUUAU CG GGUGCAGUgug   g
|||||     |||     ||||||| || |||||||||||   u
ugucg     cac     UCCAAUG GC CUACGUcauau   g
     -gaag   AUCCC       U  A           aag 

>oan-mir-1421ae (-47.40)   [oan-miR-1421ae:23-44]

  uu  cc              AAC         A            aua 
ag  ga  uacgguauggugug   AGGUUAUAU UGGUGCAGUgug   g
||  ||  ||||||||||||||   ||||||||| ||||||||||||   u
uc  cu  gugucgugccacau   uccaaugua acuacgucauau   g
  cu  cu              ccc         c            aag 

>oan-mir-1419e (-31.52)   [oan-miR-1419e:26-46] [oan-miR-1419e*:59-79]

gggcagauugauggugucacacacaA       ---A         ACGug 
                          UGCUGGG    GACGUCAUC     c
                          |||||||    |||||||||     u
                          ACGACCC    CUGUAGUgg     a
---------------ccuguaguACC       ACGA         ccucc 

>oan-mir-1421af (-48.00)   [oan-miR-1421af:19-40] [oan-miR-1421af*:58-78]

--   cu             AAC          C           aua 
  gac  acggcauggugug   AGGUUAUAUG GGUGCAGUgug   u
  |||  |||||||||||||   |||||||||| |||||||||||   u
  cug  ugucgugccauaU   UCCAAUGUGC CUACGUcguau   g
cu   --             CCU          A           aag 

>oan-mir-187 (-38.30)   [oan-miR-187*:14-34] [oan-miR-187:49-69]

u   aga    c    A     G       -   -Ag  u 
 gug   ccuc gGCU CAACA AGGACAC AGG   cu u
 |||   |||| |||| ||||| ||||||| |||   ||  
 cac   ggag CCGA GUUGU UUCUGUG Ucc   ga u
a   -ga    A    C     G       C   caa  c 

>oan-mir-32 (-48.50)   [oan-miR-32:28-47] [oan-miR-32*:69-89]

uuc  auuc   --ua    ug                 U            - uu  c 
   cc    ugc    gcuc  guggagaUAUUGCACAU ACUAAGUUGcau g  gu a
   ||    |||    ||||  ||||||||||||||||| |||||||||||| |  ||  
   gg    acg    ugag  cacuuUUAUAGCGUGUG UGAUUUAACgug c  cg a
guu  cccc   uacg    ua                 -            u uc  g 

>oan-mir-1415 (-51.50)   [oan-miR-1415:70-90]

g g   g u   ca  c     a   ---a     ca    a           -guc   a 
 g uuc g cgg  gg gggug gaa    ggagg  guuu agaagcagaac    ugc c
 | ||| | |||  || ||||| |||    |||||  |||| |||||||||||    |||  
 c aag c gcc  cc uccac cuu    CCUCC  CAAA UCUUCGUCUug    acg c
- g   g u   -a  -     -   ccac     AC    G           auaa   g 

>oan-mir-1416 (-30.02)   [oan-miR-1416:31-52]

cugggcaaguaaccaau     u    cuuUC        AU   G    -  auucu 
                 ggcug cacu     CUUAACUC  GCC CUGU GC     c
                 ||||| ||||     ||||||||  ||| |||| ||     u
                 cuggc guga     gaguuggg  ugg gaca cg     u
---------gaccuaau     c    aacau        --   -    a  cuuuc 

>oan-mir-101-2 (-33.90)   [oan-miR-101:49-70]

  ug  c                    c a    guaua 
ac  uc uuuuucgguuaucacgguac g ugcu     u
||  || |||||||||||||||||||| | ||||      
ug  gg aaGAAGUCAAUAGUGUCAUG C AUgg     g
  gu  u                    A -    aaagu 

>oan-mir-873 (-36.20)   [oan-miR-873:16-36] [oan-miR-873*:53-74]

         u ca   G A      UG G       ua  ga 
aaguuugug g  uuU C GGAACU  U AGUCUCC  uu  a
||||||||| |  ||| | ||||||  | |||||||  ||  a
uuuaaacac c  AAG G CCUUGA  G UCAGAGg  aa  a
         c ac   G C      GU G       gc  gu 

>oan-mir-1417 (-42.90)   [oan-miR-1417:21-38] [oan-miR-1417*:78-98]

ccu  -   au   aga   uG    AU   G        aaaugaugacuuuagcaaaagucaaaaaugac 
   cc gaa  cag   aac  CUCG  GAU AUCUUCCu                                u
   || |||  |||   |||  ||||  ||| ||||||||                                 
   gg cuu  guc   uug  gggu  cug ugggagga                                g
---  u   cg   -ga   gu    gu   -        gggcucgACGAGAGUCUUGGCCACUUUAuugc 

>oan-mir-1418 (-53.72)   [oan-miR-1418:6-28] [oan-miR-1418*:86-105]

cuuccUA   UCA C         GGA  u        -   --aa   c  cucugcc     u 
       ACU   G GCCGAGGGU   Cg ggcccugg ccg    ggc gc       gcggu a
       |||   | |||||||||   || |||||||| |||    ||| ||       ||||| g
       uga   c cgguucCCG   GC CUGGGGCC GGC    ccg cg       cgcca c
-gaccag   cua -         --A  -        U   CUcc   u  -ccccuc     c 

>oan-mir-17 (-33.02)   [oan-miR-17:14-36] [oan-miR-17*:52-71]

     a       -CA        A  G     G   uggua 
gucag auaaugu   AAGUGCUU CA UGCAG UAG     u
||||| |||||||   |||||||| || ||||| |||     g
caguu uauuacg   UUCACGGA GU ACGUC Auc     u
     g       aUG        A  G     -   uaaga 

>oan-mir-7-3 (-43.60)   [oan-miR-7:14-36] [oan-miR-7*:56-77]

       c     U  A     A U     U      cucua  u 
gccgggc ccguc GG AGACU G GAUUU GUUGUu     gc g
||||||| ||||| || ||||| | ||||| ||||||     || a
uggcccg ggcAG CC UCUGA C CUAAA CAACag     cg c
       u     U  G     C -     -      ---ca  c 

>oan-let-7f-1 (-57.64)   [oan-let-7f:30-51] [oan-let-7f-1*:87-106]

----------------uuugcuaaggauggau      gg   a UG                    --------uuu       u 
                                ugcucu  cag g  AGGUAGUAGAUUGUAUAGUU           aggguag a
                                ||||||  ||| |  ||||||||||||||||||||           ||||||| a
                                acgagg  guc c  UCCGUUAUCUAACAUAUCaa           uccuauu u
aguuugggccuaucuuugguggcaucuuuaag      -a   - CU                    uagaggccuuu       u 

>osa-MIR1423 (-104.30)   [osa-miR1423-5p.2:21-44] [osa-miR1423:95-115]

     a   u                    A    -             a        -     -c  g 
gcaca cac aguauuugggAGGCAACUAC CGUU GGGCGCUCGaucc gggguggg aaaau  gg c
||||| ||| |||||||||||||||||||| |||| ||||||||||||| |||||||| |||||  ||  
cgugu gug ucauaaacccuCUGUUGAUG GCGA CCCGCGAgcuagg ccccaccc uuuug  cc g
     c   u                    -    A             c        c     ca  c 

>osa-MIR1424 (-79.73)   [osa-miR1424:269-289]

ccagcuaguuuagcuccca  cc   caag   g  g    -   aa     gu    u      c   gauugcuccaguccuaucccaugcuccuccuugagcucccaaucauugagcucucggauccucucugcucuucucugaucuggugucguuc 
                   gg  agu    gua ag cagc uca  gugua  cauc cuugau guu                                                                                           c
                   ||  |||    ||| || |||| |||  |||||  |||| |||||| |||                                                                                           a
                   cc  uca    caU UU GUCG AGU  CACGU  guag ggacua cga                                                                                           g
-----------------aa  --   --aa   G  A    U   CA     Ac    -      a   aauaguagagaccuuuggacuuuacuaguugaugaauggauggaauauuagaacaacaagucacaagaaguaagacguuguacaaaccuuu 

>osa-MIR1425 (-46.00)   [osa-miR1425:14-34]

          c           AUC         -  --a         ua 
cuguugacug auUAGGAUUCA   CUUGCUGCU aa   uguauugcu  u
|||||||||| |||||||||||   ||||||||| ||   |||||||||  a
gauagcugau uaauucuaggu   gaacgacga uu   auauaacga  u
          a           caa         c  gua         cu 

>osa-MIR1426 (-31.30)   [osa-miR1426:5-25]

aaauA   UC    UG       AA  ga   acgauaggcaggccgugaagcaaauauguaag 
     GAA  UUGA  AUGAUUA  ag  ggg                                a
     |||  ||||  |||||||  ||  |||                                c
     cuu  agcu  uacuaau  uu  ccc                                g
-aaaa   uu    ua       ag  ac   aaaaaaaaagugaaagaucuuaagggccguug 

>osa-MIR1427 (-190.20)   [osa-miR1427:186-206]

-------------              c    c            a                             g  a       c   cguua   ccaacugaaaucugcacugauuugauuacaugcgca 
             uggcugcgcgcgac gcgc gucccgcaggcc gcgccgcgccaccgcgcgguuccgcagca gg caugcgc acc     cag                                    c
             |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||| |||     |||                                     
             accgacgcgcgcug cgcg cagggcguccgg cgcggCGCGGUGGCGUGCCAAGGCGUcgu cc gugcgcg ugg     guc                                    g
gccagggcaccga              a    c            c                             g  g       c   cuuag   cuugucgcgugugagcgacguacgugacguauauau 

>osa-MIR1428a (-61.00)   [osa-miR1428a-5p:9-29] [osa-miR1428a-3p:89-109]

gguua u                 A   Cc            u aa  g        au  u 
     g gCGUUUUGCAAAUUCGC GGC  uaucuuguggua g  cu aguacgcg  ga u
     | ||||||||||||||||| |||  |||||||||||| |  || ||||||||  ||  
     c ugcaaaacGUUUAAGUG CCG  AUAGAAUaccau c  gg uuaugcgu  cu u
----a u                 -   AA            u gg  g        -c  a 

>osa-MIR1429 (-45.69)   [osa-miR1429-5p:1-21] [osa-miR1429-3p:99-119]

         U          U   u        ------------uu     u   -      gug 
GUAAUAUAC AAUCCGUGCA cca cguauauc              acacg cau gugaac   c
||||||||| |||||||||| ||| ||||||||              ||||| ||| ||||||    
cGUUGUAUG UUGGGCACGU Ggu guguaugg              ugugu gua uacuug   a
         U          U   -        uaauuguaaauauu     u   a      gcu 

>osa-MIR1430 (-68.10)   [osa-miR1430:108-128]

       gauug -    g       a   u    ug  u    -   c     g        -   -    -a a 
augagga     c cucu uuagcca gaa ggcu  cc aucu cca uauuu guucauca cug gaac  c c
|||||||     | |||| ||||||| ||| ||||  || |||| ||| ||||| |||||||| ||| ||||  |  
uacucuu     g gaga AAUCGGU CUU CCGA  GG Uaga ggu auaaa uagguggu gac cuug  g u
       ----a u    G       C   -    GU  -    a   -     g        a   u    gg u 

>osa-MIR1431 (-98.90)   [osa-miR1431:185-205]

--gggauucagaaagga     -----      u               c  ug    cg      g c     u   a          auaaaugaguuuauggaucgacccacuugcaucu 
                 aagac     uuaggg ugcaagcgggucaac cg  aacc  cuuaua g aaaau agu gguaacccgu                                  c
                 |||||     |||||| ||||||||||||||| ||  ||||  |||||| | ||||| ||| ||||||||||                                   
                 uucug     gauccc aCGUUCGCCCGGUUG GC  UUgg  gaauau c uuuua uca cuauugggca                                  u
guacgaacaauucucga     ccgua      u               A  GU    au      a a     u   -          cacaaaagugcagcaccaggcuaaacggcgugaa 

>osa-MIR1432 (-55.80)   [osa-miR1432:7-27]

      A     A           GA     -c    ------       cu    c 
ccugug UCAGG GAGAUGACACC  Caucg  cgga      auucguu  uggu u
|||||| ||||| |||||||||||  |||||  ||||      |||||||  |||| u
ggauac agucc cucuacugugg  guagu  gccu      uaaguag  accg g
      a     c           ac     uu    gguagu       -u    u 

>osa-MIR1433 (-53.60)   [osa-miR1433:86-106]

--------------   ccau   c a     a    u        u  --     ca     auca      uc 
              agg    cuu g uagcc agga gauuugcc gu  agccc  uuguc    gcucuc  c
              |||    ||| | ||||| |||| |||||||| ||  |||||  |||||    ||||||   
              ucc    gag C AUCGG UCCU CUGAACGG ca  ucggg  aacag    cgagag  g
acccuaucguauuc   --au   c C     C    -        U  uc     cc     ----      cu 

>osa-MIR444b (-85.52)   [osa-miR444b.2:100-120] [osa-miR444b.1:106-126]

-au         u   ga        u               u              ---uuuag    u 
   gcaagggga ggu  caagcuug ggcagcaacugcaca cuugcaagaaaauc        gguu u
   ||||||||| |||  |||||||| ||||||||||||||| ||||||||||||||        |||| u
   cguuucccu CCG  GUUCGAAC CUGUUGUUGACGUgu gaacguucuuuuag        ccag c
aac         -   UC        U               u              uagccaua    a 

>osa-MIR444c (-88.20)   [osa-miR444c.2:98-118] [osa-miR444c.1:104-124]

aguug   -    u              a                 u           ---      uuua 
     cug caag ggaggcggcaagcu gagacagcaacugcaua cuugcaagaaa   aucggu    u
     ||| |||| |||||||||||||| ||||||||||||||||| |||||||||||   ||||||    g
     gac guuu ccuCCGUCGUUCGA CUCUGUUGUUGACGUgu gaacguucuuu   uagcca    g
---aa   c    c              A                 c           uag      uacc 

>osa-MIR444d (-80.30)   [osa-miR444d.3:82-102] [osa-miR444d.2:103-123] [osa-miR444d.1:108-128]

aguuauu   cau  u    c     a       a         u             g     --        
       gca   gg ggca caagc ugaggca caacugcau acuugcaagaaag cacaa  aaucauu 
       |||   || |||| ||||| ||||||| ||||||||| ||||||||||||| |||||  |||||| a
       cgu   cc cCGU GUUCG ACUCCGU GUUGACGUG UGAACGUUCUUUC GUGUU  uuaguag 
--uaaac   cuc  u    C     A       C         U             G     ca        

>osa-MIR444e (-77.90)   [osa-miR444e:99-119]

     u    c        a      a      c                 -a    c ug    -au a 
gguuu guaa caggggca uaagcu gaggca caacugcauaacuugcg  gaaa u  uugg   g u
||||| |||| |||||||| |||||| |||||| |||||||||||||||||  |||| |  ||||   | g
ccaaa cguu guuuccgu aUUCGA CUCCGU GUUGACGUauugaacgc  uuuu a  aacc   c a
     u    u        c      A      C                 cg    - gu    guu u 

>osa-MIR444f (-70.90)   [osa-miR444f:124-144]

au  u    c     a      u          u         gg a   ca   cacaa  aa  cau      ac 
  gg ggca caagc ugaggu acaacugcau acuugcaag  a uca  agu     ga  ca   guuauu  a
  || |||| ||||| |||||| |||||||||| |||||||||  | |||  |||     ||  ||   ||||||   
  cc ccgu gUUCG ACUCCG UGUUGACGUg ugaacguuc  u agu  uca     cu  gu   uaauag  a
-g  u    c     A      U          u         uu c   -a   uacua  gg  aac      gu 

>gga-mir-1329 (-33.99)   [gga-miR-1329:21-42] [gga-miR-1329*:59-80]

ucuugg  u   ug   a    CA       C       U  auuucuc 
      uc ggu  uag gaUA  GUGAUCA GUUACGA GG       a
      || |||  ||| ||||  ||||||| ||||||| ||        
      ag uca  auc cUAU  CACUAGU CGAUGCU CC       a
----ag  u   gu   c    AG       U       -  aacaaug 

>gga-mir-1397 (-37.00)   [gga-miR-1397:29-50] [gga-miR-1397*:64-85]

agcuguugacugaau       g       CA     AC           cuaau 
               gcgaugu ugcauUG  UUGCG  GGGUUAUAUCA     c
               ||||||| |||||||  |||||  |||||||||||      
               ugcugcg auguAGU  GACGC  CCCAAUGUAGu     g
-------uugcaaag       a       AC     AA           acaau 

>gga-mir-1416 (-34.20)   [gga-miR-1416:17-37] [gga-miR-1416*:55-76]

u a            uUC            CGC    ccuu  u 
 g ggcugauacuuu   CUUAACUCAUGC   UGUG    ua a
 | ||||||||||||   ||||||||||||   ||||    || u
 c cugacuaugagA   GAGUUGAGUAUG   ACAc    au u
a -            CAU            UUA    -uuu  u 

>gga-mir-22 (-46.10)   [gga-miR-22*:21-42] [gga-miR-22:62-83]

gcucc       ccgg              -     A      u  -c  u 
     uggcugc    cagcAGUUCUUCAG UGGCA GCUUUA gu  cu c
     |||||||    |||||||||||||| ||||| |||||| ||  || u
     accgaug    guUGUCAAGAAGUU ACCGU CGAAau cg  ga c
cuugc       -uaa              G     -      -  au  u 

>gga-mir-551 (-57.10)   [gga-miR-551*:26-48] [gga-miR-551:66-86]

      --  - c     -         a         GG     AAGAC     -  g 
ccacca  ga g ugccc cauggcucc GAAAUCAAG  UGGGU     CUugu ag a
||||||  || | ||||| ||||||||| |||||||||  |||||     ||||| || u
gguggu  cu c auggg gugucgggG CUUUGGUUC  ACCCA     Ggacg uc a
      ga  g u     u         A         AU     ---GC     g  a 

>gga-mir-454 (-43.01)   [gga-miR-454*:14-32] [gga-miR-454:72-94]

ccauuau   -gcuUCCUAA       -  U          ---         -  -       ug 
       cca          CCUUAAG GA GAGacccuau   caauauugc cu cugcuuu  u
       |||          ||||||| || ||||||||||   ||||||||| || |||||||  g
       ggu          ggaguuu cu uucUGGGAUA   GUUAUAACG GA gauggga  c
-------   acuucuuaug       u  u          UUC         U  U       cu 

>osa-MIR810b (-176.60)   [osa-miR810b.1:144-164] [osa-miR810b.2:168-188]

----   c                        aaua                             c                                               c 
    agc caccacauguggcucgcaugcuua    acuaacggcauaauuagaucacuugauga gacguauaucgguguucgcuauauauacuaucuacugguaaguauau u
    ||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| u
    ucg gugguguacaccgagcguacgaau    ugaUUGCCGUAUUAAUUUAGUGAAcuaCU CUGCGUAUAGCCACAAGUgauauauaugauagaugaccauucauaua u
gcau   a                        ----                             A                                               a 

>mdv1-mir-M9 (-24.90)   [mdv1-miR-M9-5p:6-27] [mdv1-miR-M9-3p:46-67]

   g    UC    U   CC       c  --      
gcg uUUU  UCCU CCC  CGGAGUU ac  uguau 
||| ||||  |||| |||  ||||||| ||  |||| c
cgu AAAA  AGGA GGG  GCCUCAA ug  gcaug 
   G    --    C   -A       A  uu      

>mdv1-mir-M10 (-26.70)   [mdv1-miR-M10-5p:3-24] [mdv1-miR-M10-3p:43-64]

--ugGC                CCA  ucucu  u 
      GUUGUCUCGUAGAGGU   Ga     cc g
      ||||||||||||||||   ||     ||  
      CAAUAGAGCAUCUCUA   CU     gg u
guuugA                AAG  -caac  u 

>mdv1-mir-M11 (-27.40)   [mdv1-miR-M11-5p:4-26] [mdv1-miR-M11-3p:43-64]

aaaU UU   U               ----c  g 
    U  CCU ACCGUGUAGCUUAGA     uc g
    |  ||| |||||||||||||||     ||  
    A  GGA UGGUACAUUGAGUuu     ag a
-uUU GG   C               uauca  a 

>mdv1-mir-M12 (-35.30)   [mdv1-miR-M12*:6-29] [mdv1-miR-M12:39-58]

     AG           A        G c 
gauca  GCCCUCCGUAU AUGUAAAU U c
|||||  ||||||||||| |||||||| |  
cuagU  UGGGAGGCAUA UACGUuug a a
     CU           A        g a 

>mdv1-mir-M13 (-27.40)   [mdv1-miR-M13:37-57]

--ag          ga     cg      a 
    uuuuccagga  uuucc  guuucg c
    ||||||||||  |||||  |||||| u
    AAAGGGUCCU  AAAGG  CGaagc g
ucua          GC     UA      c 

>gga-mir-1434 (-21.40)   [gga-miR-1434:2-21]

--aG     G U    -GA           c  u   cu 
    UGCGU A GAUG   AAAUUucuuca uu gac  g
    ||||| | ||||   ||||||||||| || |||  a
    gcgca u cuau   uuuaaagaagu ag uug  c
ucga     g -    gag           u  u   uu 

>oan-mir-1421y-2 (-48.20)   [oan-miR-1421y:25-46] [oan-miR-1421y-2*:64-86]

    cu  ucuau           ---A    -  -          A       aua 
ccag  ca     ggcacggugug    GGAG GG CACAUGUGGU CAGUgug   g
||||  ||     |||||||||||    |||| || |||||||||| |||||||   u
gguc  gu     cugugucacgc    UCUC CC GUGUAUACUA GUcguau   g
    -u  -uucu           caCG    U  A          C       aag 

>oan-mir-1421y-3 (-41.90)   [oan-miR-1421y:14-35] [oan-miR-1421y-3*:53-73]

 ug          A     G   AU     A       aua 
a  gcacggugug GGAGG CAC  GUGGU CAGUgug   g
|  |||||||||| ||||| |||  ||||| |||||||   u
u  ugugcuacaC CCUCC GUG  UACUA GUcguau   g
 gu          C     A   CG     C       aag 

>oan-mir-1419c-2 (-46.30)   [oan-miR-1419c:29-50] [oan-miR-1419c*:66-87]

     -   ccag      c u    ca A  U     A    U      ---   cu 
uccug ggc    ugaugg g caug  c GU CUGGG GAUG UAUCAC   Gug  a
||||| |||    |||||| | ||||  | || ||||| |||| ||||||   |||   
agggc ccg    acuacc c guac  G CA GACCC CUGC AUAGUg   uac  u
     g   -aga      - -    aC C  C     A    U      gcu   uc 

>oan-mir-1419c-3 (-44.10)   [oan-miR-1419c:27-48] [oan-miR-1419c*:64-85]

uc   -   acag      u    ca A  U     A    U      ---   cu 
  cug ggc    ugaugg caug  c GU CUGGG GAUG UAUCAC   Gug  a
  ||| |||    |||||| ||||  | || ||||| |||| ||||||   |||   
  ggc ccg    acuacc guac  G CA GACCC CUGC AUAGUg   uac  u
-a   g   -aga      u    aC C  C     A    U      gcu   uc 

>oan-mir-1421ag-1 (-40.40)   [oan-miR-1421ag*:15-35] [oan-miR-1421ag:50-70]

        a  ---uu     G A             Aug  ag 
uacggcac gu     gAGGU G CACGUGGUGCAGU   au  u
|||||||| ||     ||||| | |||||||||||||   ||   
augucgug ca     CUCCA U GUGCACUACGUCG   ua  g
        c  cauaC     G -             -aa  ag 

>oan-mir-1419b-2 (-49.70)   [oan-miR-1419b:30-51] [oan-miR-1419b-2*:67-88]

-ca     -   acag   -  u u   aca          A    U      ---    u 
   uccug ggc    uga gg g cau   cAGUGCUGGG GAUG UAUCAC   Guga a
   ||||| |||    ||| || | |||   |||||||||| |||| ||||||   ||||  
   agggc ucg    acu cc c gua   GUCACGACCC CUGC AUAGUg   uacu u
gaa     g   -aga   a  - -   aaC          A    U      gcu    u 

>oan-mir-1421ab-2 (-50.80)   [oan-miR-1421ab:22-43] [oan-miR-1421ab-2*:61-81]

-  --u   gua      g     A        C    C     GA  gaug 
 gg   gac   cggcac gugug GGAGCUCA ACGU UUGCA  gu    u
 ||   |||   |||||| ||||| |||||||| |||| |||||  ||    c
 cc   cug   gucgug cacaU CCUCGAGU UGCG AACGU  cg    g
g  uuu   --g      a     G        C    U     ag  aaag 

>oan-mir-1421ac-2 (-49.80)   [oan-miR-1421ac:15-36] [oan-miR-1421ac-2*:54-74]

        u     A     A   AU             aua 
cacggcac gugug GGAGG CAC  GUGGUGCAGUaug   c
|||||||| ||||| ||||| |||  |||||||||||||   u
guguugug cacaC CCUCC GUG  UACUACGUcguau   a
        c     C     A   CG             acg 

>oan-mir-1421ah (-47.50)   [oan-miR-1421ah:19-39] [oan-miR-1421ah*:59-77]

   cu  c          A     A       GG          aua 
gac  ac acacggugug GGAGG CACAUGU  GUGCAgugug   g
|||  || |||||||||| ||||| |||||||  ||||||||||   u
cug  ug ugugucacac CCUCC GUGUGUA  UACGUcguau   a
   --  u          c     G       -A          aag 

>oan-mir-1421ai (-31.10)   [oan-miR-1421ai:11-32] [oan-miR-1421ai*:47-65]

  acg     A C      G          G   gau 
gc   gugug G AGGUCA GUGUGGUGCA Ugu   a
||   ||||| | |||||| |||||||||| |||   g
cg   cacau C UCCAGU CGUACUACGU aua   u
  --a     c C      G          -   agg 

>oan-mir-1421aj (-57.20)   [oan-miR-1421aj:35-56] [oan-miR-1421aj*:74-94]

u  u    --u     c  ---acc              A     A   AU      UG  uug  ag 
 ug guga   uccag ug      uacggcacggugug GGAGG CAU  GUGGUG  GU   au  u
 || ||||   ||||| ||      |||||||||||||| ||||| |||  ||||||  ||   ||   
 ac uacu   agguc ac      auguugugccgcaC CCUCC GUG  UACUAC  cg   ua  a
g  -    ugc     u  cuuucu              C     A   CG      GU  -ua  ag 

>oan-mir-1422b-2 (-47.40)   [oan-miR-1422b-2*:25-47] [oan-miR-1422b:63-84]

     gccac g   uu     u           C           U  gua 
gagua     u ugg  cuggu uCAAUCCAUAC AAGAUUUUCUA gu   c
|||||     | |||  ||||| ||||||||||| ||||||||||| ||   a
cucau     a acu  gacca AGUUAGGUGUG UUCUAAAAGAu ua   a
     auauu g   gg     U           -           c  aua 

>oan-mir-1421g-2 (-53.40)   [oan-miR-1421g:22-43] [oan-miR-1421g-2*:61-80]

  u    ua   cacg   cg             U       Agug  gg 
gg gacg  cgg    gug  AGGGGGUCGUACG CAUGCAG    au  c
|| ||||  |||    |||  ||||||||||||| |||||||    ||   
cc cugu  guc    cac  UCCUCCAGCGUGC GUACGUc    ua  g
  u    gg   acga   aU             -       -gua  ag 

>oan-mir-1421g-3 (-34.20)   [oan-miR-1421g:6-27]

g                 UCA     Agug  gg 
 ugugAGGGGGUCGUACG   UGCAG    au  c
 |||||||||||||||||   |||||    ||   
 acauuccuccagcgugu   acguc    ua  g
-                 gcc     -gua  gg 

>oan-mir-1421i-2 (-27.50)   [oan-miR-1421i:4-24] [oan-miR-1421i-2*:40-61]

    --     C     -  CC     agu   gg 
gugA  GGAGG CGUAU CU  UGCGG   gau  u
||||  ||||| ||||| ||  |||||   |||   
cacu  CCUCC GCAUG GA  GCGCC   cua  g
    cc     A     U  -A     -GU   ag 

>oan-mir-1421i-3 (-27.50)   [oan-miR-1421i:4-24] [oan-miR-1421i-3*:40-61]

    --     C     -  CC     agu   gg 
gugA  GGAGG CGUAU CU  UGCGG   gau  u
||||  ||||| ||||| ||  |||||   |||   
cacu  CCUCC GCAUG GA  GCGCC   cua  g
    cc     A     U  -A     -GU   ag 

>oan-mir-1421k-2 (-69.30)   [oan-miR-1421k:30-51] [oan-miR-1421k-2*:69-89]

gga   c   --u  cc              AA        C             ggua 
   ucc ggc   ga  uacggcauggugug  CAGGUUAC UGUGGUGCAGUgu    g
   ||| |||   ||  ||||||||||||||  |||||||| |||||||||||||    u
   agg cug   cu  gugccgugccacaC  GUCCAGUG GCACUACGUcgca    g
uag   u   ucu  cu              CC        U             aaag 

>oan-mir-1421k-3 (-63.60)   [oan-miR-1421k:29-50] [oan-miR-1421k-3*:68-88]

    -    - --u  cc           a  AA        C             ggua 
gauc ccgg c   ga  uacggcauggu ug  CAGGUUAC UGUGGUGCAGUgu    g
|||| |||| |   ||  ||||||||||| ||  |||||||| |||||||||||||    u
uuag gguc g   cu  gugccgugcca aC  GUCCAGUG GCACUACGUcgca    g
    a    u ucu  cu           c  CC        U             aaag 

>oan-mir-1421l-2 (-38.50)   [oan-miR-1421l:15-36] [oan-miR-1421l-2*:54-74]

   u    g     A  UG     U  A U       gg  ag 
uac gcac gugug AG  GUCAC UG G UGCAGUg  gu  u
||| |||| ||||| ||  ||||| || | |||||||  ||   
gug cgug cacaU UC  CAGUG AC C ACGUcgu  ca  g
   c    a     C  GU     U  C U       -a  ag 

>oan-mir-1421p-2 (-61.02)   [oan-miR-1421p:31-52] [oan-miR-1421p*:77-98]

-gg   ccc   -u    ua      g     A           -  C      -A ug uggug 
   ggc   agg  gacc  cggcac gugug GGGGGCCGUAC CU AUGCAG  g  u     g
   |||   |||  ||||  |||||| ||||| ||||||||||| || ||||||  |  |     a
   ccg   ucu  uugg  gucgug cacAC CCUCCGGCGUG GA UACGUc  c  g     a
aga   --a   uu    --      a     C           U  -      gg gu uguuu 

>oan-mir-1421ak (-44.70)   [oan-miR-1421ak:15-36] [oan-miR-1421ak*:50-72]

gc    g    g   -U         AG         gaua 
  gcac gugu agC  GGUCACAUG  GUGCAGUGU    g
  |||| |||| |||  |||||||||  |||||||||    u
  cgug caca UCG  CUAGUGUAC  UACGUCAca    g
-a    g    -   CU         CA         gaag 

>oan-mir-1421al (-44.60)   [oan-miR-1421al:33-54] [oan-miR-1421al*:67-87]

aggaucc   cu  cc     ca       aaC              A       aua 
       cag  ga  uaugg  cggugug   AGGUUACAUGUGGU CAGCAUg   g
       |||  ||  |||||  |||||||   |||||||||||||| |||||||   u
       guc  cu  guguc  gucacac   UCCAAUGUGCACUA GUCGUau   g
-----cu   -u  cu     ac       ccC              C       aag 

>oan-mir-1421am (-29.50)   [oan-miR-1421am:4-25]

gcaA          G  CA     Agug  gg 
    GGAGGUCGUA GU  UGCAG    au  c
    |||||||||| ||  |||||    ||   
    ccuccagcgu cg  acguc    ua  g
-uuc          g  uc     -gua  ag 

>oan-mir-1422p (-42.90)   [oan-miR-1422p*:27-47] [oan-miR-1422p:67-87]

---uug     accauc           u          A G        ----uu  a 
      gagug      cugauucugga UCAGUCAAGA A UAUUUUCU      ac u
      |||||      ||||||||||| |||||||||| | ||||||||      || a
      cucau      gacugggaccU AGUUAGUUCU U GUAAAAgg      ug c
ucacga     auacga           U          G G        ucuaau  a 

>oan-mir-1422q (-37.60)   [oan-miR-1422q:25-46] [oan-miR-1422q*:64-85]

-ag      cc   g     c    U          -C        --CU    g 
   gauuga  auu ugauu uggu UCAAUCCAGA  CAGUUUUU    uuau u
   ||||||  ||| ||||| |||| ||||||||||  ||||||||    |||| u
   cugauu  uaa acuga aucG AGUUAGGUCU  GUCAAAAG    aaua a
aga      ua   g     u    U          AU        aucc    a 

>oan-mir-1420g (-40.50)   [oan-miR-1420g:17-38] [oan-miR-1420g*:55-76]

------uu   u    c        C       GA   --C      -     
        gcu aauc agccuAUC GGCCUGG  GCA   UCUCUa guga 
        ||| |||| |||||||| |||||||  |||   |||||| ||| u
        cgg uugg uugGGUAG CUGGACC  CGU   Aggggu caua 
ucgucacu   -    u        A       AC   UAA      a     

>oan-mir-1419f (-33.50)   [oan-miR-1419f*:29-50] [oan-miR-1419f:66-87]

auauccg   acag      u  -   acA     C  A      --    -C   cu 
       agc    cgaugg gc cgc   GUGCU GG GAUAUU  GUCA  Gug  a
       |||    |||||| || |||   ||||| || ||||||  ||||  |||   
       ucg    guuacc ug gcg   CACGA CC CUAUAG  UAgu  uac  c
-----cg   -aga      -  u   CAC     C  A      UA    cu   cc 

>oan-mir-1419g (-32.62)   [oan-miR-1419g:13-34] [oan-miR-1419g*:50-70]

    -u  ca   AU       A    U       cgcua 
ggug  ca  ugc  UACUGAG GAUG CAUCACA     c
||||  ||  |||  ||||||| |||| |||||||     c
ccac  gu  acG  AUGACUC CUAC GUAGUgu     u
    cu  ac   CC       A    U       cuuac 

>osa-MIR1435 (-47.80)   [osa-miR1435:4-23]

      C            U    uu  a               --aaa          c    u  u   aaaa    -aug    a   u 
acuUUU UUAAGUCAAACU UUUu  ag uuugaucaaauuuau     aaaaauauag aaua uu uag    aaau    uuca uau a
|||||| |||||||||||| ||||  || |||||||||||||||     |||||||||| |||| || |||    ||||    |||| ||| a
ugaaaa aauucaguuuga gaag  uc aaauuaguuuaaaua     uuuuuauauu uugu aa auc    uuua    aagu aug a
      a            u    uu  -               auauc          u    c  u   gugg    auca    a   u 

>osa-MIR1436 (-124.20)   [osa-miR1436:121-141]

         --------                      a                                          u 
aguuuaugu        gcuacucccuccgucccauaau uuaaaaccuaggacuggauaggacguuucauaguacaaugac c
|||||||||        |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| a
ucaaauaua        ugaUGAGGGAGGCAGGGUAUUA Aauuuuggauccugaccuauccugcaaaguaucauguuacug g
         uccaacuc                      C                                          a 

>osa-MIR1437 (-169.00)   [osa-miR1437:147-168]

     c                              a                   a   gugaggug      ac      ca  gc      a   u 
gcgcg ggggagggagggaacggugccuagugcggc ccggagcucgccagcacgc gga        aggagg  ggcggc  gg  gcggag gcu g
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||        ||||||  ||||||  ||  |||||| |||  
cgcgc ccccucccuccuuuGUCACGGAUCACGCCG GGCCUcgagcggucgugcg ccu        uccucc  ucgccg  cc  cgccuc cgg c
     a                              C                   -   --------      -a      --  ac      g   c 

>osa-MIR1438 (-58.40)   [osa-miR1438:19-40]

    u a   aag  u               C                          c  c    a  c     cuauguaaa       -ua  u 
guug g uau   gu uuAGGGUAAUUUUAU AUUUUUAAgaaaacaaaauuuaauac uu agau uu gguau         aaauuuu   ga c
|||| | |||   || ||||||||||||||| |||||||||||||||||||||||||| || |||| || |||||         |||||||   ||  
uaac c aua   ca aaucccauuaaaaua uaaaaauucuuuuguuuuaaauuaug aa ucua aa ccaua         uuuaaaa   cu c
    u c   aua  u               u                          c  a    a  u     --------a       uaa  c 

>osa-MIR1440 (-130.00)   [osa-miR1440:10-29]

        a                          c    c          c                      ---    -----   c     ccc 
aaaugcca UGCUCAAAUACCACUCUCCUaaauuu cauu ccaaauacca ccgggcccacaugucagccuca   ucca     gca agggu   a
|||||||| |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||   ||||     ||| |||||    
uuuacggu acgaguuuauggugagaggguuuaaa guaa gguuuauggu ggcccggguguacagucggagu   aggu     ugu uuuca   c
        c                          a    u          a                      gaa    aaguu   -     cua 

>osa-MIR1441 (-108.40)   [osa-miR1441:140-160]

       c         c       cc              c    a                                        gg 
guuuuuu auucguguc gaaaacu  uuuugauaucuggu aaac uucgaugugacaucuaaaaauuuucuuuucgcgaacuaag  c
||||||| ||||||||| |||||||  |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||   
caaaaaa uaagcacag cuUUUGG  AAGGCUGUAGGCCA uuug aggcuacacuguggguuuuuaaaagaaaagcgcuugauuu  c
       a         a       AA              a    c                                        gu 

>osa-MIR1442 (-75.00)   [osa-miR1442:6-25]

    u      AG      -       a      g acuag   -gg   u          aag       ----a       cuaagug    cu 
ucua AUUCAU  UACUAG AUGUGUc caucca u     guu   ugu uuaugggacg   ggaguag     ucuuuug       gagg  a
|||| ||||||  |||||| ||||||| |||||| |     |||   ||| ||||||||||   |||||||     |||||||       ||||   
aggu uaagua  augauc uacacag guaggu g     uag   aua aauacccugc   ccucauc     aggagac       cucu  a
    c      aa      c       c      g -guaa   gga   u          cua       auaug       --uacua    ua 

>osa-MIR1439 (-63.70)   [osa-miR1439:132-152]

   ug uuug        g       ac      c           c         c       cua        --u     cua 
uau  u    uuauaaau uaauacu  cuccgu ccaaaauauag cauuuuuag uaugaau   gacauugu   uuuag   u
|||  |    |||||||| |||||||  |||||| ||||||||||| ||||||||| |||||||   ||||||||   |||||    
aua  g    gauguuua aUUAUGA  GAGGCA GGUUUUauauu guaaaaauc auacuua   cuguaaca   agauc   g
   gu uuuu        a       GU      A           c         a       aac        uac     uaa 

>ptc-MIR171l (-52.50)   [ptc-miR171l:78-97]

         g   c  u           c      aucuucugugcauaagcauc 
ggagaagua aca gg gugauauuggu cggcuc                    u
||||||||| ||| || ||||||||||| ||||||                    g
cuucuucgu ugu uc CACUAUAACUA GCCGAG                    a
         a   -  U           A      Cagaaguacucacuucuuga 

>ptc-MIR171m (-43.90)   [ptc-miR171m:70-89]

     ag   u  c           c      aucuucuguauuugcauc 
gaagc  aca gg gugguauugau cggcuc                  a
|||||  ||| || ||||||||||| ||||||                   
cuucg  ugu uc CACUAUAACUA GCCGAG                  g
     ca   -  U           A      Cagaagucgcuucuugaa 

>ptc-MIR171n (-42.60)   [ptc-miR171n:70-89]

     ag   u  c           c      u     u  -auuu  au 
gaagc  aca gg gugguauugau cggcuc ucuuc gu     gc  c
|||||  ||| || ||||||||||| |||||| ||||| ||     ||  a
cuucg  ugu uc CACUAUAACUA GCCGAG agaag cg     ug  g
     ca   -  U           A      C     u  cuuuu  aa 

>ptc-MIR530a (-74.90)   [ptc-miR530a:21-40]

         uu  c                           --       ------------   u      u     a 
gccaacaug  gc uuuaucUGCAUUUGCACCUGCACCUUa  cuuguuu            cuu cuuuug uuuug c
|||||||||  || |||||||||||||||||||||||||||  |||||||            ||| |||||| |||||  
ugguuguac  cg aaguggacguggacguggacguggagu  gaacaaa            gaa gaaaac aaaac u
         --  u                           uc       auuacaaaguuu   u      c     c 

>ptc-MIR530b (-68.10)   [ptc-miR530b:21-40]

     u   uu  c                          uu  guuuguuuuguuuuugacuccacaaacaaaaucaaguucugu 
gccaa aug  gc uuuaucUGCAUUUGCACCUGCAUCUU  gc                                          c
||||| |||  || ||||||||||||||||||||||||||  ||                                          g
ugguu uac  cg aaguggacgugaacguggacguggag  ug                                          a
     u   --  u                          -u  auucgaauaaucaaagguauagauuaacaggguguaugacau 

>ptc-MIR1444a (-40.70)   [ptc-miR1444a:59-78]

          u               a    u    a uu uuu 
guuuaucacu gaauguugaccgaau ugga gaaa g  g   u
|||||||||| ||||||||||||||| |||| |||| |  |    
cgaguaguga CUUGUAACUGGCUUA ACCU cuuu c  u   c
          c               C    c    - cu ugu 

>ptc-MIR1444b (-36.00)   [ptc-miR1444b:56-75]

u     c      ua          a  u          au 
 uuauc cucgaa  uugaucgaau ug augaaauaug  g
 ||||| ||||||  |||||||||| || ||||||||||  g
 aauag gagCUU  AACUGGCUUA AC Uacuuuguau  u
a     u      GC          C  U          au 

>ptc-MIR1444c (-36.10)   [ptc-miR1444c:56-75]

u     c      ua          a  u         gau 
 uuauc cucgaa  uugaucgaau ug augaaauau   g
 ||||| ||||||  |||||||||| || |||||||||   g
 aauag gagCUU  AACUGGCUUA AC Uacuuugua   u
a     u      GC          C  U         aau 

>ptc-MIR1445 (-25.70)   [ptc-miR1445:93-112]

       -   -  cu     cc            uu   acaauugaaugaaccuuguuugcaa 
aagcuaa uua au  gauuu  cuaguuuauaag  guu                         g
||||||| ||| ||  |||||  ||||||||||||  |||                          
uuugguu agu ua  cuAAA  GAUCAGAUGUUC  Uaa                         c
       u   c  au     AA            CC   auaccacccgccguugauuaggaua 

>ptc-MIR827 (-28.30)   [ptc-miR827:48-68]

       a a         a           -a  au 
caugaau u uuuguugau gucaucuagug  ac  u
||||||| | ||||||||| |||||||||||  ||  g
guacuua A AAGCAACUA CAGUAGAUUau  ug  a
       c A         C           ac  aa 

>ptc-MIR1446a (-58.50)   [ptc-miR1446a:9-28]

     uuc          U   -             u ua    --      a 
ccaac   UUCUGAACUC CUC CCUCAAccgcuac c  gagc  uuggca u
|||||   |||||||||| ||| ||||||||||||| |  ||||  |||||| c
gguug   aagacuuggg gag ggaguuggcgaug g  uuug  agcugu c
     uac          -   u             u uc    uu      u 

>ptc-MIR1446b (-48.30)   [ptc-miR1446b:9-28]

     uuc          U   -    A     c  u u    ---      a 
ccaau   UUCUGAACUC CUC CCUC Accgc ac c agag   guuggc c
|||||   |||||||||| ||| |||| ||||| || | ||||   |||||| c
gguug   aagacuuggg gag ggag uggcg ug g ucuu   uaacug u
     uac          -   u    c     a  u -    ugu      u 

>ptc-MIR1446c (-40.90)   [ptc-miR1446c:9-28]

     u        A U     -   CA        u ua    uucc    cu 
ccaac uuUUCUGA C CUCUC CCU  Acugcuau c  gagc    ugag  a
||||| |||||||| | ||||| |||  |||||||| |  ||||    ||||   
gguug aaaagacu g gaggg gga  ugacgaug g  uuug    guuc  a
     u        c -     u   ac        u uc    ---u    cc 

>ptc-MIR1446d (-51.30)   [ptc-miR1446d:9-28]

     uuc        U     -    A        u u   ---u    c  a 
ccaac   UUCUGAAC CUCUC CCUC Acugcuac c aga    cuug ca u
|||||   |||||||| ||||| |||| |||||||| | |||    |||| || c
gguug   aggacuug gagag ggag ugacgaug g ucu    gaac gu c
     uaa        -     u    c        u -   uugu    u  c 

>ptc-MIR1446e (-49.24)   [ptc-miR1446e:9-28]

     u         -       -    A        --ucuaga     uuaa 
ccaac uuUUCUGAA CUCUCUC CCUC Acugcuau        gcuug    u
||||| ||||||||| ||||||| |||| ||||||||        |||||    c
gguug aaaaggcuu gggggag ggag ugacgaug        ugaac    c
     u         u       c    c        ucccuuug     uguu 

>ptc-MIR1447 (-54.40)   [ptc-miR1447:88-108]

       u                    aaaugucuguuggcaaguggcgaugccag 
gaggccc aaucagggcacugcaauucu                             a
||||||| ||||||||||||||||||||                              
uuucggg UUAGUUCCGUGACGUUAAGA                             c
       u                    Cugauuauuuacuauucauuuaaaguuug 

>ptc-MIR1448 (-42.40)   [ptc-miR1448:59-78]

     g           -a     c  u  -u    -    uu 
guuac gguaugggagg  uugga ag ac  gcuu gguu  a
||||| |||||||||||  ||||| || ||  |||| ||||   
uaaug cCAUACCCUCC  AACCU UC ug  ugaa ccaa  a
     g           GC     U  u  uc    a    uu 

>ptc-MIR1449 (-18.25)   [ptc-miR1449:8-29]

         AG     C   AG  -A    -ga   -uaa      aaaacaaacag a 
gauuaguUG  GUGCA GUA  AU  ACUC   ugu    uuuaaa           g u
|||||||||  ||||| |||  ||  ||||   |||    ||||||           |  
cuaauuaau  uacgu cgu  ua  uggg   aca    aaauuu           c c
         --     u   ga  aa    aag   uaaa      aaauaaaauaa u 

>ptc-MIR1450 (-84.14)   [ptc-miR1450:110-131]

             cag       gu      c             c             ugucu     gauuug 
gagucaauuaggu   uugugua  cugacc gagccauugaaga aaucauuuguugg     cauug      u
|||||||||||||   |||||||  |||||| ||||||||||||| |||||||||||||     |||||       
cucgguugaucua   aacaCAU  GACUGG CUCGGUAACUUcu uuaguaaacaacc     gugac      u
             acg       UG      -             c             uauuu     agucca 

>osa-MIR827 (-77.10)   [osa-miR827:110-130]

g           c  c  a     ca                  a              - ugau 
 auuuucgcuga gg cg uuuaa  cagccaccagcgaaaaug auuuuugcuagcgg c    g
 ||||||||||| || || |||||  |||||||||||||||||| |||||||||||||| |    u
 uAAAAGCGACU CC GU GAAUu  gucgguggucguuuuuac uagaaacgaucgcc g    a
g           A  A  A     cg                  c              a uaga 

>pta-MIR482c (-44.60)   [pta-miR482c:58-77]

             -    a       cugu        cuca 
aggagugggaggg uagg gaaggcu    ggugaggu    g
||||||||||||| |||| |||||||    ||||||||     
uccUUACCCUCCU AUCC CUUCUga    cuacucua    u
             U    -       ----        auac 

>pta-MIR482d (-32.66)   [pta-miR482d:69-88]

    u    a    -     uaa    aa  uuaa      acucug 
gagg gugg agga uaggg   gacu  gg    ggagaa      c
|||| |||| |||| |||||   ||||  ||    ||||||      u
uucc UACC UCCU AUCCC   CUga  cc    ucucuu      u
    U    C    C     -UC    --  -ucg      aauuac 

>gga-mir-1451 (-70.10)   [gga-miR-1451:26-47] [gga-miR-1451*:63-85]

ca     -----   g                G     G   A      C   uu a 
  gagca     agc caggagcugcugccUC CACAG AGC AGUUAC GCg  c g
  |||||     ||| |||||||||||||||| ||||| ||| |||||| |||  | c
  cucgu     ucg guccucggcgaCGGAG GUGUC UCG UCAAUG cgu  g u
-c     cccuc   -                A     G   C      C   cc c 

>gga-mir-460b (-38.80)   [gga-miR-460b-5p:22-43] [gga-miR-460b-3p:57-79]

cucagaucu       cgu     U       CA         ua u 
         ggcucua   ugUCC CAUUGUA  UGCUGUGUG  u u
         |||||||   ||||| |||||||  |||||||||  | g
         ucgaggu   ACAGG GUAACGU  GCGACACau  a c
-------ac       aaU     U       AC         gc c 

>gga-mir-1452 (-27.66)   [gga-miR-1452:11-32]

a       ucUU         C   -        agccug 
 gggacug    GAGAUAAGA AGA GGAUAUUa      a
 |||||||    ||||||||| ||| ||||||||      a
 cucugau    uucuguucu ucu ccuauaau      a
-       ---u         u   u        aaaaau 

>gga-mir-1306 (-31.30)   [gga-miR-1306:42-64]

--    c    u  ccu  a        gug  gc 
  ucca cacc cc   gc aacgucca   ac  a
  |||| |||| ||   || ||||||||   ||   
  aggU GUGG GG   CG UUGCAGGU   ug  g
ac    A    U  UCU  G        -aa  ga 

>gga-mir-1453 (-42.30)   [gga-miR-1453:47-69]

- ug   -    u   --u    ca       ----    g 
 g  cag gcuc cug   ggcu  gcccagc    ugcg u
 |  ||| |||| |||   ||||  |||||||    ||||  
 c  gUC CGAG GAC   CCGA  CGGGUcg    acgu a
u gu   U    U   UCU    --       uggu    c 

>gga-mir-1454 (-19.60)   [gga-miR-1454:67-90]

-a      cuaua    gugug          ---a    -      ----   caa 
  uagugg     gagu     uagggucuua    ugug aguuuu    cuu   a
  ||||||     ||||     ||||||||||    |||| ||||||    |||    
  gucauc     CUCG     GUUUCAGAGU    ACAU ucgaga    gaa   u
ua      --ucC    -----          AGUA    G      auac   aau 

>gga-mir-1456 (-61.30)   [gga-miR-1456:27-49] [gga-miR-1456*:63-83]

--g    a   a cc    c     a     A      A        G  - gg  u 
   ucag ugg g  uggg cgaac ggGAA GGACGG GGCGGCCC CG C  gg c
   |||| ||| |  |||| ||||| ||||| |||||| |||||||| || |  ||  
   aguc gcc c  gccc gcuug ccCUU CCUGCC CUGCUGGG GC g  cu g
ucg    c   - au    a     c     C      G        -  u -a  u 

>gga-mir-1457 (-24.90)   [gga-miR-1457:60-81]

gcauc     c u    gg   a     ucc    c -ucac  uu 
     cacaa c ccuu  gca ccugu   agug g     cu  a
     ||||| | ||||  ||| |||||   |||| |     ||  a
     guguU G GGAA  CGU GGACA   UCAC c     ga  a
---ga     U -    AA   C     ---    a uauua  uu 

>gga-mir-1458 (-28.50)   [gga-miR-1458:67-87]

uua  -uc   -   ----          -    -  --u     a    -auu   ca 
   gu   agc cuc    auuuuuuuua gagu uc   ggagu ucuu    gca  a
   ||   ||| |||    |||||||||| |||| ||   ||||| ||||    |||  a
   ca   ucg gag    uaaaAAGAGU CUCG AG   CCUUa agag    cgu  a
uca  uuu   c   augu          A    U  UGU     a    gagu   au 

>gga-mir-1459 (-17.40)   [gga-miR-1459:4-31]

ucuAUC   -    --G       --A  GA    Uugaa     --g u 
      CUG UGAU   UUCUAUA   CU  GGUU     uggca   c u
      ||| ||||   |||||||   ||  ||||     |||||   |  
      gac acug   gagaugu   gg  ccga     acugu   g u
----ga   c    aag       aaa  -a    -----     aca u 

>gga-mir-1460 (-54.80)   [gga-miR-1460:16-39]

----  g          a            G     UCAGGGUggcccccu 
    ag cucccugcag cAAUUUAUUGCA CCUUC               g
    || |||||||||| |||||||||||| |||||                
    uc gaggggcguc guuaaauaaugu ggaag               c
cguu  g          c            -     ggggaccacuugucu 

>gga-mir-216c (-37.10)   [gga-miR-216c:15-36]

--ugc       ua        A       U     GA  gcu 
     cagauug  gaAUCUCU CAGGUAA UGUGA  uu   a
     |||||||  |||||||| ||||||| |||||  ||    
     gucugac  uuuagaga guccguu acacu  ag   u
ucagu       cc        c       u     ac  aaa 

>gga-mir-1462 (-40.54)   [gga-miR-1462:27-47]

-     -u  ugagu     u   u c    CU   -  -U       U  uaccuc 
 ggcag  gc     gcagc cuc c cUGG  UUC CA  GACAGGU GG      u
 |||||  ||     ||||| ||| | ||||  ||| ||  ||||||| ||       
 ucguc  ug     cgucg gag g gacc  gag gu  cugucua cc      c
c     uc  --ugu     u   u a    cc   u  uc       u  uuccua 

>gga-mir-1463 (-30.70)   [gga-miR-1463:67-91]

ga      g   a  g     uuaag  a     ---  ---a  -       -au    g 
  acuuga ugc ca ucuca     au cucag   ag    au gaaugaa   gaaa a
  |||||| ||| || |||||     || |||||   ||    || |||||||   ||||  
  ugaauu acg gu agagU     UA GAGUC   UC    UA CUUGcuu   cuuu a
uc      g   -  a     -----  A     GUU  GUAG  U       cau    a 

>gga-mir-1464 (-57.60)   [gga-miR-1464:26-49]

g    a    cu        ----g     ----     U   A    C   -U  GAuc 
 gcgc gcac  gcgugugu     gcugU    GCUGU UGC GGGC GCC  CG    c
 |||| ||||  ||||||||     |||||    ||||| ||| |||| |||  ||    g
 cgcg cgug  cgcacacg     cgaca    cgaca acg cccg cgg  gc    c
-    a    --        acaca     caca     c   -    u   cc  aacc 

>gga-mir-1465 (-42.20)   [gga-miR-1465:22-42]

gcaa       augau         -  AG   C   -    UUau     ccacg   g 
    gguguua     gagccUUUC AG  GUG UGG GUGC    ggcuc     aag u
    |||||||     ||||||||| ||  ||| ||| ||||    |||||     |||  
    ccacggu     cuuggaaag uc  cac auc caug    ucgag     uuc c
---c       -cggu         g  cu   a   a    --uu     ----a   a 

>gga-mir-1466 (-44.10)   [gga-miR-1466:11-34]

cg    cc  GC     ---     GUGCUGGGGGAUccgugcuucucccaccccu 
  cccu  cc  GCUCA   GGCUG                               u
  ||||  ||  |||||   |||||                               a
  ggga  gg  cgagu   ucggc                               g
-a    au  -a     agg     agaaagggguccgguuugucuugggguuuuc 

>gga-mir-1467 (-38.10)   [gga-miR-1467:20-42] [gga-miR-1467*:63-84]

----g    --a  ---a      g uu      C   A  -     A    -   ggca 
     ggac   gg    cagguu u  UCUCAG UAC UC GGUGU AAUC cag    a
     ||||   ||    |||||| |  |||||| ||| || ||||| |||| |||     
     ccug   cc    gucuaa a  AGGGUC AUG AG CCACA Uugg guc    u
gucca    cua  accg      g CU      A   -  A     C    a   aucu 

>hiv1-mir-TAR (-34.60)   [hiv1-miR-TAR-5p:4-27] [hiv1-miR-TAR-3p:38-60]

--    C           A     UCU    cu 
  gggU UCUCUGGUUAG CCAGA   GAgc  g
  |||| ||||||||||| |||||   ||||   
  CCCA AGGGAUCAAUC GGUCU   CUcg  g
cA    -           -     ---    ag 

>hsa-mir-1469 (-25.80)   [hsa-miR-1469:1-22]

-       CGG   GCGG     g 
 CUCGGCG   GGC    GCUCC g
 |||||||   |||    ||||| g
 gggccgc   ccg    cgggg u
g       -aa   --ag     u 

>hsa-mir-1470 (-35.30)   [hsa-miR-1470:1-21]

-G      -   -  -   -A   -     - a 
  CCCUCC GCC CG UGC  CCC CGggg c g
  |||||| ||| || |||  ||| ||||| |  
  gggggg ugg gc gcg  ggg gcccc g g
ca      a   a  c   ca   c     a a 

>hsa-mir-1471 (-26.50)   [hsa-miR-1471:1-22]

    -G  -UG         G   a agg 
GCCC  CG   UGGAGCCAG UGU g   c
||||  ||   ||||||||| ||| |    
cggg  gu   aucucgguc aca c   g
    ga  uua         g   - gag 

>ssc-mir-99b (-30.00)   [ssc-miR-99b:7-28]

     cC         AC   C    C - -   c 
ggcac  ACCCGUAGA  CGA CUUG G g ggc u
|||||  |||||||||  ||| |||| | | |||  
cugug  ugggugucu  gcu gaac c c ccg u
     cc         gu   c    a a g   c 

>oan-mir-1421ag-2 (-25.00)   [oan-miR-1421ag:38-58]

---uga  -    -----             gug  ag 
      gu ugga     cacguggugcagu   au  u
      || ||||     |||||||||||||   ||   
      ca gCCU     GUGCACUACGUCG   ua  g
gugcca  u    CCAGU             -aa  ag 

>odi-mir-1468 (-28.20)   [odi-miR-1468:16-40]

--------------   -gau      ----    A     A AUG     U    A  guu 
              gaa    gaguaa    aauU AGGCG G   AGGUC UUGG CA   a
              |||    ||||||    |||| ||||| |   ||||| |||| ||   a
              cuu    cucguu    uuaa uccgc c   uccag agcc gu   u
uuuuagagagacag   aaau      caau    c     - --a     u    a  aau 

>odi-mir-1469 (-33.00)   [odi-miR-1469:66-89]

aggccggagaucgucaauggagaacgcuucagcu      g    cuc   g   caa 
                                  uugcga cauc   ugu gga   u
                                  |||||| ||||   ||| |||    
                                  AGCGCU GUAG   ACG Uuu   c
------------caucuuuagcugaggCCUUCAA      G    --A   G   cuu 

>odi-mir-1470 (-43.59)   [odi-miR-1470:16-39]

---aaa ug   c  u  CA     U      A  G   U      gauccaa 
      g  aug ga ga  CACCU AACACC GU CGC GAaggg       u
      |  ||| || ||  ||||| |||||| || ||| ||||||        
      c  ugc cu cu  gugga uugugg ca gcg cuuccc       a
uuucaa gu   a  u  aa     -      a  g   c      aaacaau 

>odi-mir-1471 (-30.20)   [odi-miR-1471:16-38]

u       aaua  a C      G            CG   c   a    a 
 uaacuug    ga U ACCUUG UAUCAAAAUUUG  cug ugg aauu a
 |||||||    || | |||||| ||||||||||||  ||| ||| |||| a
 auugaac    cu a uggaac auaguuuugaac  gac auu uuaa u
c       aaag  c a      -            -a   a   g    a 

>odi-mir-1472 (-14.50)   [odi-miR-1472:66-88]

cgcuuuucaaauagacuugcugaaaaguagagaaaa    c   u     -a   -c g  a a 
                                    ugag ggu uugaa  auc  a ug c a
                                    |||| ||| |||||  |||  | || | c
                                    auuc CCA GAUUU  UAG  U AC G u
-------------------------uguucaaaaua    -   U     AG   AA G  G U 

>odi-mir-1473 (-34.00)   [odi-miR-1473:66-87]

aauccgcacuccguuagaaucuggagccaucgcagauucg      uu     uuu  a 
                                        gacuug  guuug   ca a
                                        ||||||  |||||   || u
                                        UUGGGC  CGAAC   gu u
----------------acgcgucgggcggcgUGUGGCUAU      -U     --U  c 

>odi-mir-1474 (-31.30)   [odi-miR-1474:16-37]

------------------aa      u  a   U       C  A         Ug gc 
                    ugcaau ga aaa GUCAGGA UG GGUUGUGCU  a  u
                    |||||| || ||| ||||||| || |||||||||  |  u
                    auguua cu uuu uaguucu gc cuaauacga  u  u
cccaaaugagcagcucgaaa      -  g   u       c  a         gu aa 

>odi-mir-1475 (-33.40)   [odi-miR-1475:66-86]

gauaa    -    auc    cu         a    a    c   -   aaaa 
     ugag ucgc   cguc  aaguuuauu ugug ccua aga uca    g
     |||| ||||   ||||  ||||||||| |||| |||| ||| |||    a
     acuc agcg   gcaG  UUCAAAUGG ACAC GGGU Ucu agu    u
---gc    g    --a    -U         -    -    C   u   aaaa 

>odi-mir-1476 (-38.90)   [odi-miR-1476-5p:16-37] [odi-miR-1476-3p:62-83]

-------   -     aa  u           A    A     -----  c     c 
       agc cgaga  uc uuUCUGGGCAA GGUA AUGUA     UG guaag a
       ||| |||||  || ||||||||||| |||| |||||     || ||||| u
       ucg gcucu  gg AGAGACUCGUU CCAU UACAU     ac cauuc c
gcuacua   c     --  c           G    G     ucuac  c     a 

>odi-mir-1477 (-35.60)   [odi-miR-1477:16-38]

-------------     guau     aU    A AG    AA        gua  -  g 
             gacgu    uuggc  GUGC A  CCCU  CAUUUCUA   gc cc g
             |||||    |||||  |||| |  ||||  ||||||||   || ||  
             uugcg    aaccg  cacg u  ggga  guaaagau   ug gg g
acagcuuucgagu     ----     cc    a ga    -g        aug  a  g 

>odi-mir-1478 (-33.40)   [odi-miR-1478:16-39]

--------ca     a     c U  A      A     CA      --c   acac 
          ccagu ccuag g GG ACUAGU UGGAG  GGCUGA   cuu    a
          ||||| ||||| | || |||||| |||||  ||||||   |||     
          ggucg ggauu c cc ugaucg acuuc  cugacu   gaa    a
cagcuagcac     -     u c  a      a     --      ccc   aaag 

>odi-mir-1479 (-42.26)   [odi-miR-1479:16-38]

------g     a    g  aC     G    U  AAU           aacaga 
       ucgcg ggug ag  AACGA UCCU GA   UACCGGcugag      a
       ||||| |||| ||  ||||| |||| ||   |||||||||||      a
       agugc cuac uc  uugcu agga cu   auggucgacuc      a
gcucacg     -    g  cu     -    -  -au           accaau 

>odi-mir-1480 (-24.80)   [odi-miR-1480:16-39]

ucuucuuguugacucGGUGGCUCA    ---CG      -    gaa     --g      -   a 
                        UUCU     GCUUGU GUCa   uuauu   cugauc cga a
                        ||||     |||||| ||||   |||||   |||||| ||| u
                        aaga     cgaaca uagu   aauag   gacuag gcu g
------------------------    ucuua      a    aaa     gaa      u   a 

>odi-mir-1481 (-38.42)   [odi-miR-1481:16-39]

-------c   -    ag      C       AG       A     u   aguuu 
        uac cgca  aggggC ACAAUGA  AUAGAAG UGGCU cag     u
        ||| ||||  |||||| |||||||  ||||||| ||||| |||     a
        aug gcgu  uuuucg uguuacu  uaucuuc gccga guc     u
cagcucac   a    aa      c       --       a     -   auguu 

>odi-mir-1482 (-24.40)   [odi-miR-1482:16-39]

------   a   cg gac c UG       CA    C     AGa  g  auau 
      uug ugc  a   g U  AACUUCU  GGAA AGGCU   cu gu    c
      ||| |||  |   | |  |||||||  |||| |||||   || ||    c
      aac acg  u   c a  uuggaga  cuuu uccga   ga ca    u
cucaac   -   au aca a gu       --    a     aga  g  aacg 

>odi-mir-1483 (-45.99)   [odi-miR-1483-5p:16-40] [odi-miR-1483-3p:65-88]

-caa          cgC     --UG  U    A C          cguaucu 
    cccaguuucu   GGCAG    AG CGAU G GCCCUUUcgg       a
    ||||||||||   |||||    || |||| | ||||||||||        
    gggucaaaga   CCGUC    UC GCUA C CGGGAaagcu       g
auaa          aAC     UAUA  C    - -          uuuaaaa 

>odi-mir-1484 (-40.90)   [odi-miR-1484:65-88]

-----  gc    a   -  c     -uaa    uu    g    ---       gg 
     uc  aggg ccg gu gacca    ugcg  guuu accu   uuuggcu  c
     ||  |||| ||| || |||||    ||||  |||| ||||   |||||||   
     ag  ucuc ggc CA CUGGU    AUGC  CAAA Uggg   ggaccga  u
gagcu  -a    -   U  -     UUAG    UU    G    caa       ag 

>odi-mir-1485 (-32.90)   [odi-miR-1485:16-39]

------------accguuuuu      A     AAGCU   U           gcg  u 
                     uagcug AGGUA     GGC ACAUAACGUuu   cu a
                     |||||| |||||     ||| |||||||||||   || g
                     aucgac uccau     cug uguauugcaga   ga a
uagacagcuuuacgcucgucg      a     ---cc   u           --a  c 

>odi-mir-1486 (-28.60)   [odi-miR-1486:16-39]

-cuuaaccgguugc     ---------    G   -U    AU  A         u 
              caCUA         GGUG UUU  UUCG  GA GGUgcccag a
              |||||         |||| |||  ||||  || |||||||||  
              gugau         ucac aaa  aagc  cu ccauggguc a
uauuuuaaaaaaua     auuuaucau    a   uu    -c  c         a 

>odi-mir-1487 (-43.30)   [odi-miR-1487:16-37]

-----a    a c     a U  C      GACAAG        c  a  c g   g 
      cacg g gccag c GG AGUGGG      UUUAGGcc ug gg g auu a
      |||| | ||||| | || ||||||      |||||||| || || | |||  
      gugc c cgguc g uc ucaccc      ggguccgg ac cc c uaa a
caaaca    c -     a u  u      ------        a  -  - g   a 

>odi-mir-1489 (-30.10)   [odi-miR-1489:16-37]

--------------u    -   u     -aU     AA   C    U        aa 
               gagc ugu guuag   AGGUA  CCA GGAU GCUUAuug  a
               |||| ||| |||||   |||||  ||| |||| ||||||||  a
               uucg gca caauc   ucuau  ggu ccug cgaaugau  a
uucuaucagcuuauc    u   -     ccu     aa   c    c        ag 

>odi-mir-1490a-1 (-37.20)   [odi-miR-1490a:16-40]

---------------   ucguu        -  C    A U   U  C       aa g 
               ggc     uacaguuA GG AGUG G UGA AG GCCCUGA  u g
               |||     |||||||| || |||| | ||| || |||||||  |  
               ccg     augucagu cc ucac c acu uc cgggacu  a a
cucucccagcuuauc   --uuc        a  a    - c   c  -       aa a 

>odi-mir-1490a-2 (-36.20)   [odi-miR-1490a:16-40]

-------ua   -         uA        GU      CG   U A  u c a 
         ucg ccagaaaau  GGCAGUGA  UGAUAG  CCC G ac g g a
         ||| |||||||||  ||||||||  ||||||  ||| | || | | u
         agc ggucuuuua  cugucauu  gcuauc  ggg c ug c c u
cagcuuaua   c         cc        --      -a   c c  c a u 

>odi-mir-1490b (-33.40)   [odi-miR-1490b:16-40]

----cgc    c     -c A   -      UU     C   C   ag   ggg 
       cggu uuucg  g GGC AGUGAG  GAUAG GCC UGU  agu   u
       |||| |||||  | ||| ||||||  ||||| ||| |||  |||   u
       gucg gaagc  c ccg ucauuc  cuauc cgg gca  uca   u
cuuguca    c     aa a   c      --     -   a   aa   aga 

>odi-mir-1491 (-47.93)   [odi-miR-1491:16-37]

--         u   cgAC    A U     A             gaacuaa 
  uggcucguu cug    CCUG G GCAGA UCUUGGUcuggug       a
  ||||||||| |||    |||| | ||||| |||||||||||||       u
  accgggcaa gac    gggc c uguuu aggaccaggccgc       a
uc         -   -aaa    - -     a             aaccaag 

>odi-mir-1492 (-40.20)   [odi-miR-1492:66-86]

cuaauuau     -      g    -a  u   uu       a    g    au 
        gagca gaucag cagg  cg ggu  ugugcga accg cgaa  c
        ||||| |||||| ||||  || |||  ||||||| |||| ||||  u
        uucgu cuaguc GUUC  GC CCA  ACACGUU Uggu guuu  g
-----acu     u      -    CG  -   -U       A    a    ga 

>odi-mir-1493-1 (-42.70)   [odi-miR-1493:16-36]

---u   a  c       A         - AAU GU      --aa    cua 
    guc cu gaaaagc GAACUGUCU G   G  UGGCua    cggg   a
    ||| || ||||||| ||||||||| |   |  ||||||    ||||    
    cag ga cuuuuug cuugacaga c   c  accgau    gccc   a
aguc   c  -       c         g -gu ug      caaa    uca 

>odi-mir-1493-2 (-39.76)   [odi-miR-1493:16-36]

--uug     aa    gA       C  A         a     aaauuu 
     agauc  ggau  GAACUGU UG AUGGUUGGC gucgg      u
     |||||  ||||  ||||||| || ||||||||| |||||      a
     ucuag  cuua  uuugaca ac uaucgaccg cagcc      a
cacca     ag    aa       c  g         -     auauuu 

>odi-mir-1494 (-30.70)   [odi-miR-1494:16-37]

----------------     uu aa    aA   -        C   G  UG  gauu 
                gguua  g  ugau  AGC AGCAAGGA AGU UU  Gu    u
                |||||  |  ||||  ||| |||||||| ||| ||  ||    u
                ccgau  c  acua  ucg ucguuucu uca aa  ca    g
uagagagcaucaagca     -- ga    cc   c        a   g  gu  acca 

>odi-mir-1495 (-27.70)   [odi-miR-1495:66-88]

agugaaaau        ca   uu      -   c      u  g     uauuu 
         ucgaguuu  gaa  uguuuc gug gguauu ca uucug     u
         ||||||||  |||  |||||| ||| |||||| || |||||      
         aguuuaag  cuu  ACGAAG UAC CCAUAA GU Aaggu     c
-----aacc        --   UU      G   -      U  G     ucuaa 

>odi-mir-1496 (-41.20)   [odi-miR-1496:16-42]

------------------ca     cg   ug U      GAG   UU     U       uuu 
                    ggcag  auu  a AGCAGU   AGU  AGCAU CGCAACa   u
                    |||||  |||  | ||||||   |||  ||||| |||||||    
                    cuguc  uga  u ucguca   ucg  ucgua gcguugu   u
ucaauaggcagcagcuauca     au   gu u      --a   --     -       cau 

>odi-mir-1497a (-36.10)   [odi-miR-1497a:66-88]

ucgagagucucuagcuuuugcg        u   -    g    c      uuaa 
                      aauccgcu ccu cagu cuuc auaagu    g
                      |||||||| ||| |||| |||| ||||||     
                      uUAGGUGG GGA GUCA GAAG Uauucg    u
--------aauaacguucucau        U   C    A    U      cacu 

>odi-mir-1497b (-38.80)   [odi-miR-1497b:66-88]

aguagucu     a     a    -  -       a uu          a   auu 
        uuuug cagaa uugg uc cuaccug c  uucuucgaua gcu   u
        ||||| ||||| |||| || ||||||| |  |||||||||| |||   g
        aaaac gucuu agcC GG GGUGGAC G  AAGAAGUUau cgg   a
--------     c     c    U  U       - UC          -   aau 

>odi-mir-1497c (-26.20)   [odi-miR-1497c:66-88]

----uuuu      aaugacagu    aguc       acu      c    a  uguu 
        ucagaa         ggau    cuaccug   uuuuuc aaua gc    a
        ||||||         ||||    |||||||   |||||| |||| ||     
        agucuu         cCUG    GGUGGAC   AAGAAG UUau cg    a
gaaaccgu      ---------    --GU       GUU      -    -  uaaa 

>odi-mir-1497d-1 (-32.80)   [odi-miR-1497d:66-88]

cacuuuuuauaau  u    ug     aa       aa        uu         
             ug ugau  acuau  gcuaucu  aauucuuc  uacuuuac 
             || ||||  |||||  |||||||  ||||||||  ||||||| a
             ac acua  ugaUA  UGGUGGA  UUAAGAAG  augagauu 
----------ucu  u    ug     GG       CG        UU         

>odi-mir-1497d-2 (-28.00)   [odi-miR-1497d:66-88]

aaaaaagaacauuc     uc   c  a       aau       c       aa 
              uugaa  acu uc accaucu   auuuuuc auacguu  g
              |||||  ||| || |||||||   ||||||| |||||||   
              aacuu  uga AG UGGUGGA   UAAGAAG Uauguaa  a
---------uuucc     uu   U  G       CGU       U       au 

>odi-mir-1497e (-30.50)   [odi-miR-1497e:66-88]

uacccacaauu   -u        a    u  auu       ga      caaaa 
           gac  cuguguuu cacc cc   uaauucu  aagacu     u
           |||  |||||||| |||| ||   |||||||  ||||||      
           cug  gacauaAA GUGG GG   AUUAAGA  UUuugg     u
-------gcac   uu        G    U  -AC       AG      aacag 

>odi-mir-1497f-1 (-40.60)   [odi-miR-1497f:66-88]

aacuaaaa   -a   c        -g       uu uu     g    a    ua 
        caa  ggc uagacccu  accaccu  c  uucuu gaaa cuua  g
        |||  ||| ||||||||  |||||||  |  ||||| |||| ||||   
        guu  ucg aucuggGG  UGGUGGA  G  AAGAA UUuu gaau  a
--------   ag   c        GA       -C UU     G    c    ug 

>odi-mir-1497f-2 (-37.80)   [odi-miR-1497f:66-88]

--     aaa   uu    a    aaa     u  uu     g    a    agu 
  uuguu   ucc  cugg ccuc   caccu gc  uucuu agaa cucg   a
  |||||   |||  |||| ||||   ||||| ||  ||||| |||| ||||    
  aacaa   agg  gacc gGGG   GUGGA CG  AAGAA UUuu gagu   a
cu     ---   --    -    AUG     -  UU     G    c    aaa 

>odi-mir-1497g (-39.70)   [odi-miR-1497g:66-88]

ugaaaaaacuug      au   gu  -       ua       g        uga 
            cuugga  uag  cc accaccu  caguucu ucaagggu   g
            ||||||  |||  || |||||||  ||||||| ||||||||   c
            ggaccu  guc  GG UGGUGGA  GUUAAGA AGUUcucg   c
-------acaaa      --   uU  A       -C       -        uua 

>odi-mir-1497h (-35.10)   [odi-miR-1497h:66-88]

aaaagg      a  a  aa    -   uuc        a        auuua 
      uugaag gc ug  cacc ccu   caauucuu gaugagcu     a
      |||||| || ||  |||| |||   |||||||| ||||||||      
      aacuuu cg aC  GUGG GGA   GUUAAGAA UUauucga     g
--uaaa      c  a  AG    U   --C        G        acacu 

>odi-mir-1498 (-42.90)   [odi-miR-1498:16-39]

---c    -         aA      U      A          u   u     u 
    uggc gauuuugcg  GGAAUG AGAAUU GGAAUUCGGa agc guuua a
    |||| |||||||||  |||||| |||||| |||||||||| ||| |||||  
    accg cuggaacgc  ucuuac uuuuaa cuuuaagcuu ucg uagau a
agac    a         cc      -      -          -   -     a 

>odi-mir-1499 (-39.70)   [odi-miR-1499:16-37]

----------cgg  -  c      gCA      U   A     -    ag  aau 
             cu cg gucgag   CACCUU ACC GUGCG CUGG  cg   c
             || || ||||||   |||||| ||| ||||| ||||  ||   g
             ga gc cagcuc   guggaa ugg uacgc gacc  gu   a
auguuacuauaag  u  -      acc      u   c     c    aa  cca 

>odi-mir-1500 (-23.00)   [odi-miR-1500:66-87]

aucuuca      -u       a    cu   u a      u     c  ug  a 
       uugcau  auuuuua ucaa  gcg g ucuuau caagu uu  ga u
       ||||||  ||||||| ||||  ||| | |||||| ||||| ||  ||  
       aaugua  uaaaAGU AGUU  UGU C AGAAUA GUUca aa  uu a
----ucc      uu       -    AC   - -      -     -  gu  a 

>odi-mir-1501 (-51.90)   [odi-miR-1501:66-87]

ugacgauu     ----a   g u         ag    g        uc      a 
        ccgcg     cca c gagucuuug  agua agcaugga  gagcgg c
        |||||     ||| | |||||||||  |||| ||||||||  |||||| g
        ggcgc     ggu g CUCGGAAAC  UCAU UCGUAUcu  uucguc u
--------     gauag   g C         -G    G        --      u 

>odi-mir-1502 (-39.00)   [odi-miR-1502:16-37]

-----gca       agc  U         C           acuauu    aua 
        agcucgg   ag GAACUUUAC AUGGAACCGGG      ucac   a
        |||||||   || ||||||||| |||||||||||      ||||    
        ucgaguc   uc uuugaaaug ugcuuuggucc      agug   u
cuaaccag       auu  u         u           -----c    cac 

>odi-mir-1503 (-23.40)   [odi-miR-1503:66-85]

cucagguagaauccucugaucgaugggc   a  g    uu       a   c  ag 
                            ggu gu acga  ucuuuuu ggg gc  a
                            ||| || ||||  ||||||| ||| ||   
                            cuA CG UGUU  AGAAGGA Ccc ug  a
---------------gguucuaaaauaa   A  G    CU       G   -  ag 

>odi-mir-1504 (-35.50)   [odi-miR-1504:66-86]

gcagcaaaugagcgggcgcgcucc      u   ug       aa     cgcc  g 
                        uaaccc agu  cagguac  gcuuu    uc c
                        |||||| |||  |||||||  |||||    ||  
                        gUUGGG UCG  GUUCAUG  UGAaa    ag a
----------gcgggguuuaacuu      U   UG       --     ---u  a 

>odi-mir-1505 (-37.30)   [odi-miR-1505:66-88]

---------       --acu    ua         -     u       uuuca a 
         uugaaga     cgcc  ggucagucu cuguc uucuucc     c g
         |||||||     ||||  ||||||||| ||||| |||||||     |  
         gauuuuU     GCGG  UCAGUCAGA GAcgg gagaagg     g u
ucuuccucc       ACUCC    -C         U     c       cuucg u 

>odi-mir-1506 (-34.30)   [odi-miR-1506:16-36]

--------------u    -a   c    uU       -CCU     C    gc  ua 
               ugag  acu gccu  GGCAGUA    AAGUC CUGA  uc  a
               ||||  ||| ||||  |||||||    ||||| ||||  ||  a
               acuc  ugg cgga  ccgucau    uucag gacu  ag  a
aucgaagcagcuucc    ca   u    cu       ucuu     a    --  ua 

>cin-mir-1473 (-32.00)   [cin-miR-1473*:12-32] [cin-miR-1473:49-70]

--gc  c  ug       CGU      UCUU  Ga     aa 
    gg uc  gcACCCA   AUUCGA    GC  gagau  a
    || ||  |||||||   ||||||    ||  |||||  g
    cc ag  UGUGGGU   UGGGCU    CG  CUcua  g
cgaa  -  gu       AUU      ----  AA     ca 

>cin-mir-1497 (-39.60)   [cin-miR-1497*:24-43] [cin-miR-1497:67-89]

gccggaaucu    - uu     -a        UG A   C     --c   gcuu 
          ggcu g  agcgc  ACCACUUG  A UCU CAACa   ucg    u
          |||| |  |||||  ||||||||  | ||| |||||   |||     
          ccga c  ucgUG  UGGUGGAC  U AGA GUUgu   agc    g
------uaug    a uu     GA        GU A   A     uuc   accu 

>csa-mir-1473 (-30.90)   [csa-miR-1473:66-87]

cgaaacaucauuaaauaaccua   -    c    u    aaucu    u  ug     u 
                      cgu gggu uggc ccca     ucga cu  ugaga a
                      ||| |||| |||| ||||     |||| ||  ||||| u
                      gca ccua gcCG GGGU     GGCU GA  ACUcu a
-------------------aca   a    c    U    AUUUU    C  --     u 

>csa-mir-1497 (-31.80)   [csa-miR-1497:66-88]

accaucag  -   u   a   -ua   u       a   c     cua    u g 
        gc ugg aua gcg   acc cuuguaa ucu caaca   agcu g u
        || ||| ||| |||   ||| ||||||| ||| |||||   |||| |  
        cg acc uau cgU   UGG GGACGUU AGA GUUgu   ucga c u
----auua  u   -   -   GGA   U       A   A     --c    - a 

>odi-mir-1a (-34.89)   [odi-miR-1a:66-87]

caaaaucagccg        g  gc         ug       uu  ugaacuu 
            gaaaucgc aa  cauacuuuu  acauucu  gc       u
            |||||||| ||  |||||||||  |||||||  ||        
            uuuuagcg uU  GUGUGAAGA  UGUAAGG  cg       u
------------        g  UA         GU       -U  caguaaa 

>odi-mir-1b (-35.94)   [odi-miR-1b:66-87]

aauaaa      gg  c   uc       ac         uu    auuuca 
      agucac  ug cug  cacauuu  ugacauucu  gccu      a
      ||||||  || |||  |||||||  |||||||||  ||||       
      ucagug  ac gaU  GUGUGAA  AUUGUAAGG  cggg      a
---cuc      -a  a   CA       GA         Uu    aacgug 

>odi-mir-1c (-38.40)   [odi-miR-1c:66-87]

ugacau    -g    gg          ca          ---------       g 
      ggca  ccac  uuuacguacu  uuuacauucu         uuaagac c
      ||||  ||||  ||||||||||  ||||||||||         |||||||  
      ccgu  ggug  aAGUGUAUGA  AAAUGUAAGG         aauuuug u
---uuc    ag    -a          AG          Uauuccuuu       g 

>odi-let-7a (-27.60)   [odi-let-7a:16-37]

--------aaaauauu   gc  U   G     -  CU         -   aauua 
                gac  aa GAG UAGUG GA  GUUUAGGAa gga     a
                |||  || ||| ||||| ||  ||||||||| |||      
                cug  uu cuc aucac cu  caaauccuu ccu     a
gccgcuaccacacccg   aa  c   a     a  -u         a   aaaua 

>odi-let-7b (-31.20)   [odi-let-7b:16-37]

--      -   u    u   -  --U     -    --      --  aa  aua 
  ucggcu ugg gucg UGA GG   AGUGG UUGU  AAUAGC  Uc  ga   u
  |||||| ||| |||| ||| ||   ||||| ||||  ||||||  ||  ||    
  agcuga acc uagc acu cc   ucauc aaca  uuaucg  ag  cu   a
ac      c   -    c   a  ucu     u    cc      cg  cc  ccc 

>odi-let-7c (-41.14)   [odi-let-7c:15-36]

---------a     -       cAU     A   GG         --   gaaaau 
          ggacu aguucug   GAGGU GUA  UUAUGCUGU  ucg      a
          ||||| |||||||   ||||| |||  |||||||||  |||       
          ccuga ucaagac   cuccg cgu  aaugcgaca  ggc      a
acagcuuaua     c       -cu     -   aa         au   aaauau 

>odi-let-7d (-43.80)   [odi-let-7d:14-35]

-------     -  u    uU A      GG      U    g    ---   u 
       cgcca gu ccgu  G GGUAGU  GUUGUA CGCU aggg   aac a
       ||||| || ||||  | ||||||  |||||| |||| ||||   |||  
       guggu cg ggca  c ccauca  caacgu gcgg uccc   uug a
gcucauc     g  c    uc c      aa      c    -    acu   a 

>odi-mir-7-1 (-35.10)   [odi-miR-7:16-37]

------       u a    u   A         AUUUU      uu ----    u 
      aucuggu g cggu UGG AGACUAGUG     GUUGac  g    gaca a
      ||||||| | |||| ||| |||||||||     ||||||  |    ||||  
      uaggcua c guca gcc uuugaucac     caacug  c    cugu a
cuaacu       - -    u   c         --acu      uu uuug    u 

>odi-mir-7-2 (-35.10)   [odi-miR-7:16-37]

------       u a    u   A         AUUUU      uu ----    u 
      aucuggu g cggu UGG AGACUAGUG     GUUGac  g    gaca a
      ||||||| | |||| ||| |||||||||     ||||||  |    ||||  
      uaggcua c guca gcc uuugaucac     caacug  c    cugu a
cuaacu       - -    u   c         --acu      uu uuug    u 

>odi-mir-31 (-46.50)   [odi-miR-31:16-37]

-------      uu     c      A       GCAUU      -  ucc   u 
       ugucaa  ugcga gAGGCA GAUGCUG     GCUGcc ag   cgc a
       ||||||  ||||| |||||| |||||||     |||||| ||   ||| a
       auaguu  acgcu cuucgu uuacggc     cgacgg uc   gcg a
gcucgca      --     a      -       -agcu      c  -uc   u 

>odi-mir-92a (-27.30)   [odi-miR-92a:66-87]

acaguaauacu       --g      -    ua uca     g uu      cgau 
           ugguuga   auucua gguc  g   gagug g  uacaga    u
           |||||||   |||||| ||||  |   ||||| |  ||||||    u
           aucaauu   uaagGU CCGG  C   CUCAC U  AUgucu    u
-----------       uca      U    CC -UG     G -U      auau 

>odi-mir-92b (-26.61)   [odi-miR-92b:65-86]

uaacc      aaag    cc     c     a    uu    aacuaaaa 
     uuuucg    ucua  agucg gauua gugc  uguu        c
     ||||||    ||||  ||||| ||||| ||||  ||||        u
     aagagc    agaU  UCAGC CUGGU CACG  AUaa        a
---ac      guga    AA     C     -    UU    auuauaag 

>odi-mir-124a (-37.80)   [odi-miR-124a:66-87]

uuuugaacua         ggc       c   u        g    uuua      
          agcuuacug   aguauuc gcu gugugcuu acaa    agugu 
          |||||||||   ||||||| ||| |||||||| ||||    |||| a
          ucgagugac   UCGUAAG UGG CGCACGGA Uguu    ucacg 
-----cauua         gAA       -   -        A    ----      

>odi-mir-124b (-42.50)   [odi-miR-124b:66-87]

ccgcua    -     a           aa   c     g    --     cg 
      ccgg gcuua uuaguauucgc  gag ugcuu agaa  gugcu  a
      |||| ||||| |||||||||||  ||| ||||| ||||  |||||  u
      gguc cgagu AAUCGUAAGUG  CUC ACGGA Ucuu  uacga  u
--auaa    u     a           -G   -     A    gc     uc 

>odi-mir-219 (-27.52)   [odi-miR-219:16-36]

---------------     aaauauuc   -     U       -     A  -aga g 
               gagug        ggU GAUUG CCAAACG CAAUU Gu    c a
               |||||        ||| ||||| ||||||| ||||| ||    |  
               cucau        ccg cuaac gguuugc guuag ca    g a
aauggcagcugacgu     ---aaaau   g     c       a     g  aaga a 

>odi-mir-281 (-31.40)   [odi-miR-281:66-86]

uucauuuaucaag  u  a    aa   ga     ag        ---------    g 
             gc ga agca  aag  ggcaa  uucaugau         uguc a
             || || ||||  |||  |||||  ||||||||         ||||  
             cg uu ucgu  UUC  UCGUU  AGGUACUG         acag a
---------caaa  u  c    aG   UC     -A        Ucauaagga    a 

>cin-let-7a-1 (-41.50)   [cin-let-7a:17-37] [cin-let-7a-1*:78-98]

au   -  uga     aU       U            u  ag  -----   -   uu 
  ggc cg   ccaca  GAGGUAG AGGUUAUGCAGU au  cc     ucc cuu  a
  ||| ||   |||||  ||||||| |||||||||||| ||  ||     ||| |||  u
  uug gc   ggUGU  UUCCGUC UCCAAUGUGUca ua  gg     agg gag  a
-u   u  uuc     --       U            -  ga  acacg   u   uc 

>cin-let-7a-2 (-43.20)   [cin-let-7a:17-37] [cin-let-7a-2*:71-91]

-----au     uc       U   G                 -------u      auu 
       aguug  gauauua GAG UAGUAGGUUAUGCAGUu        ugcgac   a
       |||||  ||||||| ||| |||||||||||||||||        ||||||   u
       ucgac  cuguaAU CUC GUCAUCCGAUGUGUCaa        gcguug   u
uucucuc     uu       -   A                 uagagguu      cuc 

>cin-let-7b (-31.30)   [cin-let-7b:16-37] [cin-let-7b*:63-84]

------------a    c  c  c   U     -  U        U   --------    cau 
             ggua ac ug ugu GAGGU AG AGGUUAUG UGU        Ugca   a
             |||| || || ||| ||||| || |||||||| |||        ||||    
             cuau ug ac aCG CUCCA UC UCCAGUAC Aca        acgu   a
gguacaacuuuca    c  u  c   U     A  U        C   uagagguu    cau 

>cin-let-7c (-28.70)   [cin-let-7c:16-37]

-----------------      g  u     U   G    A       U      a  aua    
                 ugaacu au caagu GAG UAGU GGUUAUA CAGUug uu   uga 
                 |||||| || ||||| ||| |||| ||||||| |||||| ||   || a
                 auuugg ua guuca uuc auca ccgauau gucaau ga   acc 
gagaaaaaccaacuuuc      -  c     -   g    c       -      a  -gg    

>cin-let-7d (-32.70)   [cin-let-7d:16-37] [cin-let-7d*:56-74]

------------uc   uau      c    G    U        U   uc c  g 
              agc   ucgugg UGAG UAGU GGUUGUAU GUU  c uu u
              |||   |||||| |||| |||| |||||||| |||  | ||  
              ucg   gguacc aUUC AUCG CCGACAUA Caa  g aa g
uaagcaccuaucaa   -uu      a    G    C        U   uu u  u 

>cin-let-7e (-29.60)   [cin-let-7e:16-37]

--------uc   u  uc    c    G    U        C    cc uug 
          agc au  gugg UGAG UAGU GGUUGUAU GGUu  c   u
          ||| ||  |||| |||| |||| |||||||| ||||  |   g
          ucg ug  uacc auuc aucg ccgacaua ucaa  g   a
caccuaucaa   u  gu    a    a    c        -    uu uaa 

>cin-mir-7 (-32.00)   [cin-miR-7:16-37] [cin-miR-7*:47-67]

aua     ac   -  U   A     GU    -       u 
   uccgc  ccg gu GGA GACUA  GAUU UUGUUGu a
   |||||  ||| || ||| |||||  |||| |||||||  
   aggug  ggc CG CCU CUGGU  CUAA AACaacg u
---     aa   a  U   -     AU    C       a 

>cin-mir-31 (-37.40)   [cin-miR-31:16-37]

-----------aug   -     u   U   A             G    u    a 
              uaa cuggu cua GGC AGAUGUUGGCAUA CUAu ucac u
              ||| ||||| ||| ||| ||||||||||||| |||| |||| g
              auu gauca ggu ucg ucuauaaucgugu gaua agug a
aacgcaacuaaaga   c     u   u   a             -    u    u 

>cin-mir-33 (-31.50)   [cin-miR-33:16-34]

---------------  -    uuu    uuG  C     A  UG      a ug ug 
               ug guag   uccc   UG AUUGU GU  CAUUGc c  u  c
               || ||||   ||||   || ||||| ||  |||||| |  |   
               ac cguc   aggg   ac uaaca ca  guaaug g  g  a
guuuaaauacuacug  a    uuu    cca  a     a  gu      - gu uu 

>cin-mir-34 (-43.91)   [cin-miR-34:16-37] [cin-miR-34*:84-105]

uu   c      -   A  C       UU   U       uucuugc           -ug a 
  uca gugauu cug GG AGUGUAG  AGC AGUUGuu       cgagauggacu   c u
  ||| |||||| ||| || |||||||  ||| |||||||       |||||||||||   | c
  agu cacuaa gGC CC UCACGUU  UCG UCAAcaa       gcuuuauuugg   g c
uc   u      a   A  A       UU   -       -------           caa c 

>cin-mir-78 (-27.10)   [cin-miR-78:66-86]

-----     a   ugaga    c  uu       a  -----aa   ug     a 
     auuag ugu     agga ac  aucgggc uc       guu  ugaug a
     ||||| |||     |||| ||  ||||||| ||       |||  ||||| c
     uaguu aua     UCCU UG  UGGUCCG AG       uag  acugc a
gguaa     g   ---uG    U  -U       G  GUcaaag   gu     g 

>cin-mir-92a (-34.20)   [cin-miR-92a*:36-55] [cin-miR-92a:66-86]

gaagcuuuagugaaguuugauua          gaC      U     A   CG   ga 
                       uauauuacuc   GGCUGG ACAAG GCA  Auc  u
                       ||||||||||   |||||| ||||| |||  |||   
                       auaugguggg   CUGGCC UGUUC CGU  Uag  u
-------------------aaaa          aUU      C     A   UA   ga 

>cin-mir-92b (-32.80)   [cin-miR-92b*:30-49] [cin-miR-92b:66-86]

aaaaagcuccauu   -     uuac   c    UU    C      CC   uuaua 
             uuc gcagu    uug AGGU  GGAC GGUGCA  Aga     u
             ||| |||||    ||| ||||  |||| ||||||  |||      
             aag cguca    aac UCCG  CCUG UCACGU  Ucu     a
------------c   u     --ua   U    GC    U      UA   uuaga 

>cin-mir-92c (-34.80)   [cin-miR-92c*:32-51] [cin-miR-92c:66-87]

ucccaaacuuauaaacug    u c    u      U  -   A     U    uugu 
                  uacc g auac uAGGCC GG CGA GUGCA UGcg    c
                  |||| | |||| |||||| || ||| ||||| ||||     
                  augg c uaug AUCUGG CC GCU CACGU AUgc    a
--------------aaaa    u -    U      C  U   -     U    uggu 

>cin-mir-101 (-23.20)   [cin-miR-101:66-87]

uugaa  a         -a     ugg  a   -ug    --a       gaga 
     cc uuuuuucuu  cagau   ug cgc   acug   uauaugu    a
     || |||||||||  |||||   || |||   ||||   |||||||    a
     gg aaagaagga  gUUUA   AU GUG   UGAC   guauaca    a
-----  a         ca     UAA  A   UCA    AUg       agug 

>cin-mir-124-1 (-29.90)   [cin-miR-124-1*:11-30] [cin-miR-124:47-68]

-uau     guA            GA     c    ug 
    guucg   GUAUUUAUUGUG  CCUUG ugug  a
    |||||   ||||||||||||  ||||| ||||   
    uaagc   CGUAAGUGGCGC  GGAAU acac  c
uuuu     AAC            AC     a    ug 

>cin-mir-124-2 (-39.90)   [cin-miR-124-2*:28-47] [cin-miR-124:64-85]

cguaauauuuaaag    -   a   guC            GA     c    ug 
              ggcg cuu uga   GUGUUUACUGUG  CCUUG ugug  a
              |||| ||| |||   ||||||||||||  ||||| ||||   
              ccgc gaa acu   CGUAAGUGGCGC  GGAAU acac  c
------------cg    u   a   AAC            AC     a    ug 

>cin-mir-126 (-29.80)   [cin-miR-126*:12-30] [cin-miR-126:50-70]

- uu   u c   C       C        C    a  aa 
 u  cga g ugC UUGUUAC UACGGUAC aggu ga  g
 |  ||| | ||| ||||||| |||||||| |||| ||  u
 a  gcu u aCG AAUAAUG GUGCCAUG Ucua cu  a
g gg   c u   A       A        C    -  gu 

>cin-mir-133 (-38.60)   [cin-miR-133*:24-43] [cin-miR-133:66-86]

agaaaacau    -    u    c      -A   U  A        uuac  uu 
         ugcg ggug cggu GUUGGU  AAG GG AUCAAAcc    gg  u
         |||| |||| |||| ||||||  ||| || ||||||||    ||  u
         acgc ccau gucG CGACCA  UUC CC UGGUUugg    cc  a
-------ac    a    c    U      AC   -  C        --ua  ug 

>cin-mir-141 (-23.80)   [cin-miR-141*:7-26] [cin-miR-141:40-61]

----------u          GG   U       UG        
           gguguAUCUU  UCA AUAGUGU  uagauuc 
           ||||||||||  ||| |||||||  |||||| a
           uuaCGUAGAA  GGU UGUCACA  AUcuagu 
cucugugcagc          AU   C       --        

>cin-mir-153 (-33.90)   [cin-miR-153*:29-48] [cin-miR-153:66-87]

uaauaaaaugagaau  -    u       -        -C            uu uu 
               uc ugug acguguG UCAUUUUU  UAUUAUGCAAcu  u  u
               || |||| ||||||| ||||||||  ||||||||||||  |  u
               ag acgc ugcauaC AGUGAAAA  AUGAUACGUUga  g  c
--------------g  u    u       U        CA            uu ua 

>cin-mir-155 (-18.40)   [cin-miR-155:16-36]

---------------   ----   --    ---           CU   AGUG        c 
               ggu    uga  gauu   gaaugUUAAUG  AAU    AUAGGGuu a
               |||    |||  ||||   |||||||||||  |||    ||||||||  
               ccg    acu  cuaa   cuuauaauuau  uug    uauuccaa u
cucuuuugauaacca   uaaa   ca    aac           --   -aaa        a 

>cin-mir-181 (-27.60)   [cin-miR-181:16-37]

a      u  guaauA    UC   C    G    AGc    uuaac   u  uu    u 
 gauguu gu      ACAU  AAC UGUC AGCA   cugc     uag cg  guua u
 |||||| ||      ||||  ||| |||| ||||   ||||     ||| ||  ||||  
 uuguaa ca      ugug  uug acag uugu   gacg     auc gc  cagu u
g      -  -augaa    gu   u    g    --a    ---uc   -  uc    u 

>cin-mir-183 (-37.60)   [cin-miR-183:16-38] [cin-miR-183*:47-66]

c             g      A  G  A    U     cc 
 ugguguuuucggu UAUGGC CU GU GAAU CACUG  a
 ||||||||||||| |||||| || || |||| |||||   
 aucacaaaggucg AUGCCG GA CA CUUG GUGac  a
-             a      C  A  A    -     cg 

>cin-mir-184 (-37.00)   [cin-miR-184:66-87]

-------      u  aa    c  c       cuu       ---u      guu 
       gcguaa ag  cuug ca uucuucg   uccauca    uuuggg   a
       |||||| ||  |||| || |||||||   |||||||    ||||||   a
       ugcguu uC  GAAU GU AAGAGGC   AGGUagu    gaaccc   a
aacuggu      c  GG    A  C       ---       uacc      acu 

>cin-mir-199 (-32.80)   [cin-miR-199-3p:66-87]

uugauaggacuug          aaa      a  ----     - a   uug  -gca u 
             auguggcggu   ggauac cc    ugcag c acu   cg    c u
             ||||||||||   |||||| ||    ||||| | |||   ||    |  
             uacaucgucg   ucuGUG GG    ACGUC G UGA   gc    g c
------------g          --a      -  UUAC     U A   -CA  auac g 

>cin-mir-200 (-39.30)   [cin-miR-200*:16-35] [cin-miR-200:50-71]

uu    -   a  g        --    C       CG  g     
  cgug cca cc aaUCACCA  ACCA GUAGUAU  ga cauu 
  |||| ||| || ||||||||  |||| |||||||  || ||| g
  gcau ggu gg uuAGUGGU  UGGU CGUCAUA  cu gugu 
au    a   -  g        AA    C       AU  -     

>cin-mir-216 (-30.10)   [cin-miR-216:16-38]

-------------------uuacucgagccu  uU       G  G  AAU        uc 
                               gc  AAUCUCA CU GC   CUGUGAug  a
                               ||  ||||||| || ||   ||||||||  u
                               cg  uuagggu ga cg   ggcacuac  a
uauuaugcgacucagcaauuugggaaucagu  uu       a  a  --g        ua 

>cin-mir-217 (-27.80)   [cin-miR-217:16-37]

---------------au      - g   uu  --C     U    AC       ucca 
                 aguugu c uga  UA   UGCAU AGGA  UGAUUGG    a
                 |||||| | |||  ||   ||||| ||||  |||||||    a
                 ucagca g gcu  au   acgug uccu  acuaacc    a
acaaauugaaacuucac      a g   uu  auu     u    au       ucca 

>cin-mir-219 (-32.00)   [cin-miR-219:16-38] [cin-miR-219*:51-70]

-----------------auggcgucuguuuc U   U     A      G U    uuu 
                               g GAU GUCCA ACGCAA C CAGu   a
                               | ||| ||||| |||||| | ||||    
                               c CUA CAGGU UGUGUU G Guca   a
aaccaaaaacuucugucgucggaagacuaaa U   -     C      A C    uaa 

>cin-mir-281 (-38.60)   [cin-miR-281*:31-49] [cin-miR-281:66-88]

uuggaaaauauauaacu   -      guguC                U     aca 
                 guc cagugc     GGAGAGUAAUUUCAUG Uagug   u
                 ||| ||||||     |||||||||||||||| |||||   c
                 cgg gucgcg     UCUCUCGUUGAGGUAC GUcau   a
---------------ac   a      aUUAU                U     cau 

>cin-mir-672 (-25.90)   [cin-miR-672:16-37]

acauuga     a      UU  G   ACU    GUU   u    uca   auc 
       uggag uaUGAG  UG UGU   GUGU   gca gucg   agc   c
       ||||| ||||||  || |||   ||||   ||| ||||   |||    
       acuuu guacuu  gc aca   uaca   cgu cagc   ucg   a
------a     g      gg  a   ccc    gcc   u    ---   gua 

>csa-let-7a (-28.86)   [csa-let-7a:16-37]

--------ca      cucaaaaU   G    A       U      aauauu    c 
          aagccg        GAG UAGU GGUUAUA CAGUug      uuac a
          ||||||        ||| |||| ||||||| ||||||      ||||  
          uuuggc        uuc auca ccaauau gucaau      agug u
acgacuauca      -aaauucu   g    a       -      ------    g 

>csa-let-7b (-41.80)   [csa-let-7b:16-37]

---ua        g    U     -               ------  c   aau 
     guagucuu uugu GAGGU AGUAGGUUAUGUUGU      Ug gug   u
     |||||||| |||| ||||| |||||||||||||||      || |||    
     caucggga gacg cucua ucauucaguacaaca      ac cac   a
aucga        a    u     c               uagagg  a   aac 

>csa-let-7c-1 (-43.00)   [csa-let-7c:16-37]

gggcu   c     aU       U            Uuuu  -    aa     u 
     ucu ccaca  GAGGUAG AGGUUAUGCAGU    gc cuug  uguuu u
     ||| |||||  ||||||| ||||||||||||    || ||||  |||||  
     aga ggugu  uuccguc uccaauguguca    cg ggac  acgga a
---gu   c     --       u            ---u  a    --     g 

>csa-let-7c-2 (-36.60)   [csa-let-7c:16-37]

cuc   c      caU   G                 -------ug     aau 
   uug ugauaa   GAG UAGUAGGUUAUGCAGUU         gcgac   a
   ||| ||||||   ||| |||||||||||||||||         |||||    
   aac gcuauu   cuc gucguucaaugugucaa         cguug   u
cuc   a      -uu   g                 uagaggaaa     cuu 

>csa-let-7d (-35.60)   [csa-let-7d:16-37]

-------------ga   uau      a      -            U   uua a    
               ggc   ucacag UGAGGU AGUUGGUUGUAU GUU   c ccu 
               |||   |||||| |||||| |||||||||||| |||   | || u
               ucg   gguguc auuuca ucgaccgacaua caa   g ggc 
acgaccugcuauaaa   -uu      -      a            u   -ua c    

>csa-mir-7 (-31.00)   [csa-miR-7:16-38]

---------------------c     -  u   ac UG A       U    -      Uu 
                      cgucc uc acc  g  G AGACUAG GAUU UUGUUG  u
                      ||||| || |||  |  | ||||||| |||| ||||||   
                      guagg ag ugg  c  c ucugauu cuaa aacaac  c
guuuuuauucuuuacuacuauc     u  u   ca gu a       u    c      ua 

>csa-mir-31 (-32.72)   [csa-miR-31:16-36]

auguga     a   U   A             G    aaaaa 
      cuagc cua GGC AGAUGUUGGCAUA CUau     u
      ||||| ||| ||| ||||||||||||| ||||     g
      gaucg ggu ccg ucuguaaucgugu gaua     u
------     c   u   a             -    caaau 

>csa-mir-34 (-31.06)   [csa-miR-34:16-37]

auucacgugauucugAGGC       UU  C         ---ucuuau    -     uu 
                   AGUGUAG  AG UAGUUGuuu         ccgg guggg  u
                   |||||||  || |||||||||         |||| |||||  g
                   ucacguu  uc aucaacaaa         ggcu caccc  u
------------------a       uu  -         uauacuuuu    a     ca 

>csa-mir-92a (-34.00)   [csa-miR-92a:66-86]

aucauaaccacaacuaug      u    c      -a     a     u    -     
                  uaucaa augc uagacc  gacaa gugua ugcg uugu 
                  |||||| |||| ||||||  ||||| ||||| |||| ||| u
                  augguu uacg AUCUGG  CUGUU CACGU AUgc aacg 
------------gaaaga      -    a      CC     -     U    u     

>csa-mir-92b (-29.60)   [csa-miR-92b:66-86]

cccagccugacaaagaccuacuga    ag     c gu   uu    c   u    uc 
                        auac  ugcug g  cgg  uagg gca uauc  u
                        ||||  ||||| |  |||  |||| ||| ||||   
                        uaug  augaU C  GCC  GUUC CGU AUag  g
--------------------ucag    aa     U UG   CU    A   U    uu 

>csa-mir-92c (-39.90)   [csa-miR-92c:57-78]

guauaua   g      a      a ugu      uu     cg  g 
       gca ucagga cggccg g   ggugua  guacu  ua a
       ||| |||||| |||||| |   ||||||  |||||  ||  
       cgu gguucU GCCGGC C   CCACGU  UAUga  au a
---uccg   g      A      C UGU      --     ca  a 

>csa-mir-124-1 (-37.80)   [csa-miR-124:66-87]

uuauaaucgacguca    - a      auc            ga      c   ug 
               uagc c aguucg   guguuuauugug  ccuugc gug  a
               |||| | ||||||   ||||||||||||  |||||| |||   
               gucg g ucaagc   CGUAAGUGGCGC  GGAAUg cac  c
------------uac    c c      AAC            AC      a   ug 

>csa-mir-124-2 (-39.69)   [csa-miR-124:66-87]

----       aaaaucaauaaugcgc     cc     ug     ga    c     ug 
    gugacgu                uucau  gcguu  cugcg  ccuu uugug  a
    |||||||                |||||  |||||  |||||  |||| |||||   
    uacugca                aaguA  CGUAA  GGCGC  GGAA aacac  c
ucac       ----------------     AC     GU     AC    U     ua 

>csa-mir-126 (-34.30)   [csa-miR-126:66-86]

gugucauaauuau         u c   c       c        c    a  aa 
             gguuuucga g ugc uuguuac uacgguac aggu ga  g
             ||||||||| | ||| ||||||| |||||||| |||| ||  u
             ucggaggcu u aCG AAUAAUG GUGCCAUG Ucua cu  a
-----------ac         c u   A       A        C    -  ga 

>csa-mir-133 (-37.70)   [csa-miR-133:66-86]

ugaguaaaaaaaacac   -     a    u      -a   a          ugga 
                ugc uugug cggu guuggu  aag ggaucgaacc    a
                ||| ||||| |||| ||||||  ||| ||||||||||    a
                acg aacgu gccA CGACCA  UUC CCUGGUUugg    a
--------------gc   c     a    U      AC   C          uagu 

>csa-mir-141 (-47.30)   [csa-miR-141:48-69]

--u                   c    c       uc     c 
   uggucgucggucgcaucuu auca gcggugu  uagaa u
   ||||||||||||||||||| |||| |||||||  |||||  
   aucggcggcuagCGUAGAA UGGU UGUCACA  AUcuu c
uuc                   A    C       --     a 

>csa-mir-153 (-27.70)   [csa-miR-153:66-87]

ggaaaacauugucuuuac   uc   a   -       -aa            uugaa 
                  ugu  acg gug ucauuuu   uacuaugcagcu     u
                  |||  ||| ||| |||||||   ||||||||||||      
                  aca  ugc uaC AGUGAAA   AUGAUACGUUga     a
--------------aaga   uu   g   U       AUA            uugua 

>csa-mir-155 (-29.80)   [csa-miR-155:101-123]

uagcuaa     cu  ucuu   gacgu     auaa   ac    a   cggg      - a    ---g     g 
       uugua  ac    acu     gucac    uua  agca uua    acggau c cuga    cugua u
       |||||  ||    |||     |||||    |||  |||| |||    |||||| | ||||    |||||  
       aacau  ug    ugG     UAGUG    AAU  UCGU AAU    ugucua g gacu    gacau g
------a     cu  -cuu   -UAUU     ----   AA    -   -Uaa      c c    gaaa     a 

>csa-mir-183 (-37.80)   [csa-miR-183:16-38]

-----------------ac      ga   aa         A  A          uagc 
                   aguguu  cga  UAUGGCACU GU GAAAUCACUG    c
                   ||||||  |||  ||||||||| || ||||||||||    a
                   ucacaa  guu  auaccgugg ca cuuuggugac    a
acaauagcgacaucuuuca      ag   aa         a  -          ccac 

>csa-mir-200 (-34.90)   [csa-miR-200:44-65]

-----g         g     --   c       cg    gu 
      gucacugaa cauca  acc gguagua  auau  g
      ||||||||| |||||  ||| |||||||  ||||  a
      cggugacuu GUAGU  UGG CCGUCAU  Uaug  g
gcgcug         A     AA   U       AA    uc 

>csa-mir-216a (-44.90)   [csa-miR-216a:16-38]

ug            cU       G   G  A         gg 
  ucccggcucauu  AAUCUCA CUG CA UCUGUGAuu  c
  ||||||||||||  ||||||| ||| || |||||||||  u
  agggcugaguag  uuagggu gac gu agacacuaa  g
--            uc       a   -  -         aa 

>csa-mir-216b (-40.00)   [csa-miR-216b:16-37]

gu   -  uug                G   AC      gu 
  gac gc   ucgucUAAUCUCUGCA GCA  UGUGAu  c
  ||| ||   |||||||||||||||| |||  ||||||   
  cug ug   aguagguuggagacgu ugu  acacug  a
--   a  uaa                g   au      au 

>csa-mir-217 (-31.50)   [csa-miR-217:16-37]

-------------------gaa    gg    ga  C     UA        U   uug 
                      agug  gcga  UA UGCAU  GGAACUGA UGG   u
                      ||||  ||||  || |||||  |||||||| |||   u
                      ucac  cguu  au acgug  cuuugacu acu   a
gaguaugaccaccuacuguaua    au    aa  u     ga        c   uua 

>csa-mir-219 (-29.12)   [csa-miR-219:16-36]

------------a     -a    uuc     U     A   -C        uguua 
             uggcg  cugu   aUGAU GUCCA ACG  AAUACAgg     c
             |||||  ||||   ||||| ||||| |||  ||||||||     a
             acugu  gaca   ugcua caggu ugc  uugugucu     a
aacuacuucguac     ga    uaa     -     a   uu        uaaau 

>csa-mir-281 (-32.30)   [csa-miR-281:66-88]

aauucguuuauuuuacau    -     gu  c       u        c    cua    
                  guca agugc  gu ggagggu auuucaug cggu   gca 
                  |||| |||||  || ||||||| |||||||| ||||   || u
                  cggu ucgcg  UA UCUCUCG UGAGGUAC GUcg   cgu 
---------------auu    a     gU  C       U        U    ---    

>gma-MIR159b (-85.80)   [gma-miR159b:156-176]

--aa    aac            g        gu ug     a  ugau       c  ua  g    uu    g u   uc       uu   aa 
    accc   uuggaguucccu cacuccaa  c  aaagg ua    gguaaac uc  cu cuag  caug a acc  ugacuuc  aac  c
    ||||   |||||||||||| ||||||||  |  ||||| ||    ||||||| ||  || ||||  |||| | |||  |||||||  |||  a
    uggg   gACCUCGAGGGA GUGAGGUU  g  uuucu gu    ccauuug ag  ga gguc  guac u ugg  acugaag  uug  u
cuua    --a            A        Au gu     a  ---u       -  ua  g    cc    g u   ga       -c   cg 

>gma-MIR159c (-77.20)   [gma-miR159c:154-174]

---a  c  g            a        gu        ag   c     a    ug  gcu        guu    u   -a    g  aag 
    cc aa uuggagcucucu cacuccaa  cugaagga  uga gguag cccu  cu   aauucaug   accu ugg  uuca au   g
    || || |||||||||||| ||||||||  ||||||||  ||| ||||| ||||  ||   ||||||||   |||| |||  |||| ||    
    gg uu aGCCUCGAGGGA GUGAGGUU  gauuuucu  guu ccauc gggg  ga   uuaaguac   uggg acu  aagu ua   a
uucc  a  a            A        Au        -a   -     -    ca  agu        guc    u   ga    g  cga 

>gma-MIR162 (-43.70)   [gma-miR162:73-92]

--    a u a          c    c       uc   c  aa  -gu  u 
  guga g c cuggaugcag gguu aucgauc  uuc ug  uc   ug u
  |||| | | |||||||||| |||| |||||||  ||| ||  ||   || u
  cacu c g gACCUACGUC CCAA UAGCUag  aag ac  ag   ac a
cu    - - c          U    A       cu   u  ca  acu  a 

>gma-MIR164 (-45.00)   [gma-miR164:11-31]

-   u  u           CA             --uc  -u   aucu 
 agc cc uguUGGAGAAG  GGGCACGUGCAag    uc  ugg    c
 ||| || |||||||||||  |||||||||||||    ||  |||     
 uug gg acaaccucuuc  cucgugcacguuu    ag  acc    a
u   -  c           cc             ccca  uc   guaa 

>gma-MIR167c (-98.63)   [gma-miR167c:11-31]

u     a            C  C          --         a   uuuuuuuucucaccucucaugccuaauuuuuaagcaccagucauuagagaaaauaauggugaaaaauccaucuauucaauuuuuuuuuucaaauucaagguuuccaguauguaucacuaauggugaaaaaagugauggaa 
 uugag gguUGAAGCUGC AG AUGAUCUGgu  aaaucacau cuu                                                                                                                                            u
 ||||| |||||||||||| || ||||||||||  ||||||||| |||                                                                                                                                            u
 aacuc cuaacuucgacg uc uacuggacua  uuuggugua gaa                                                                                                                                            u
u     a            u  -          cc         -   uacuauugguuuaacgggaagaccacccaaaggaaauucauaauuaagguuaaauauucagagaaaauaaagaaccgagucuuugaacuucuuuuacuuuugaguuuuuuuuuuuuucauuuaaauuggguacaagaugu 

>gma-MIR169b (-69.40)   [gma-miR169b:11-31]

uau    c  C                    -uaa     u       uuug       auucauguuugucaauugauagugcauuaguu 
   gaug ug AGCCAAGGAUGACUUGCCGA    auucu ucucuaa    acuuuca                                c
   |||| || ||||||||||||||||||||    ||||| |||||||    |||||||                                u
   cugu ac ucgguuucuacugaacggcu    uggga agggauu    ugaaagu                                a
uau    -  a                    uaaa     u       ucug       guuaucacaagauauauuaguuuacguauaua 

>gma-MIR169c (-46.40)   [gma-miR169c:11-31]

a   g     A     -              Acauuaauuugccauuaagcuaacga 
 agu ggaug AGCCA AGGAUGACUUGCCG                          g
 ||| ||||| ||||| ||||||||||||||                          u
 ucg uuuau ucggu uccuacuggacggc                          u
-   g     a     c              ccuuuuagauuguuuacuaagaugga 

>gma-MIR171a (-42.70)   [gma-miR171a:72-92]

--------    aacgg        uc         a        au       a 
        guuc     gauauugg  cgguucaau agaaagca  gcucaaa u
        ||||     ||||||||  ||||||||| ||||||||  ||||||| g
        caAG     CUAUAACC  GCCGAGUua uuuuuugu  uggguuu u
cucgucac    ---CA        GU         c        cc       u 

>gma-MIR390a (-44.44)   [gma-miR390a-5p:11-31] [gma-miR390a-3p:68-87]

---------    u    a          G         Cau   u    uucucu 
         agaa cugu AAGCUCAGGA GGAUAGCGC   gga gauc      u
         |||| |||| |||||||||| |||||||||   ||| ||||       
         ucuu ggua UUUGAGUCCU CCUAUCGCg   ucu cuag      c
acacuucua    c    C          A         uuc   u    uucuca 

>gma-MIR390b (-39.20)   [gma-miR390b:11-31]

    u    a          G       A   u a   --ug ug     au 
agaa cugu AAGCUCAGGA GGAUAGC CCg g uac    a  auuau  g
|||| |||| |||||||||| ||||||| ||| | |||    |  |||||   
ucuu ggua uucgaguucu ucuaucg ggu c aug    u  ugaua  u
    c    c          a       c   u -   caua gu     cu 

>gma-MIR393 (-47.85)   [gma-miR393:11-31]

g       c            C    U          cc   c  c      cuucucucu 
 gaggagg aUCCAAAGGGAU GCAU GAUCccaaau  aag uu aauauu         u
 ||||||| |||||||||||| |||| ||||||||||  ||| || ||||||          
 uuccucu uagguuucccua cgua cuaggguuua  uuu aa uuauaa         u
u       u            u    -          --   u  -      aacucaccc 

>gma-MIR171b (-36.39)   [gma-miR171b:62-82]

---      c  c           a      a        caaccau 
   uagaca gg gugauauuggu cggcuc ucuuaauu       u
   |||||| || ||||||||||| |||||| ||||||||        
   guuugu uC CACUAUAACUA GCCGAG agaguuaa       a
uuc      -  U           A      C        caacuau 

>gma-MIR482 (-49.50)   [gma-miR482:62-85]

      u ug           -u          c   -gu    ugg 
ucagaa u  ugggaaugggc  gauugggaag aau   gugc   u
|||||| |  |||||||||||  |||||||||| |||   ||||   g
agucuu a  AUCCUUACCCG  UUAACCCUUC uua   uacg   c
      u gu           CC          U   auu    uaa 

>gma-MIR1507a (-55.40)   [gma-miR1507a:76-97]

-cagu     g    -                  a     -      uuuuc      
     guuug caga gguguauggagugagaga gggaa agggua     cgauu 
     ||||| |||| |||||||||||||||||| ||||| ||||||     |||| c
     caagc GUCU CUACAUACCUUACUCUcu cccuu ucucau     gcugu 
cuaug     A    G                  -     c      ----u      

>gma-MIR1508a (-37.10)   [gma-miR1508a:63-85]

aauu    uc           -   a      a   -   uuaca      
    gcua  caacugcuauu ccc uuucua acc uug     cgagc 
    ||||  ||||||||||| ||| |||||| ||| |||     |||| a
    uggu  GUUGACGAUAA GGG AAAGAU Ugg aac     guucu 
uucg    ga           A   -      C   u   ---ua      

>gma-MIR1509a (-43.60)   [gma-miR1509a:11-32]

cu    -cu  -             U        c --u u -u      -aagaa  u 
  gcau   uc UUAAUCAAGGAAA CACGGUCG g   g g  gccgga      ag g
  ||||   || ||||||||||||| |||||||| |   | |  ||||||      ||  
  cgug   ag aauugguuccuuu gugccagc c   c c  uggccu      uc g
--    uau  c             -        u uuu u uu      cuagug  c 

>gma-MIR1510a (-46.30)   [gma-miR1510a:61-83]

-u       cu  a                ug    -     -   g 
  uauggaa  gg gggauagguaaaacaa  acug cugua uaa u
  |||||||  || ||||||||||||||||  |||| ||||| |||  
  guaccuu  CC CCUUAUCCAUUUUGUU  Ugau gauau guu a
au       aC  A                GU    u     u   a 

>gma-MIR1511 (-38.60)   [gma-miR1511:70-89]

------   g            gu    c  c    a   gu    -u   ca 
      uca ccgugguaucag  ccug uu auca gug  cuug  guu  a
      ||| ||||||||||||  |||| || |||| |||  ||||  |||  a
      agu gGUACCAUAGUC  GGAC AA uggu cac  gaac  cga  u
aauaua   -            UC    C  u    a   --    uc   cc 

>gma-MIR1512 (-39.30)   [gma-miR1512:11-32]

-uc     u c         A                 -  a   aaa 
   uugau c UAACUGAAA UUCUUAAAGUAUuccca uc ucg   u
   ||||| | ||||||||| ||||||||||||||||| || |||    
   aacua g auugacuuu aagaauuucguaagggu ag agu   g
acu     c u         -                 u  a   aaa 

>gma-MIR1513 (-53.30)   [gma-miR1513:11-31]

    c                         C     ca       c 
ggau agauaUGAGAGAAAGCCAUGACUUA acaca  uugaaau u
|||| ||||||||||||||||||||||||| |||||  |||||||  
ccua ucuauacucucuuuugguacugaau ugugu  aauuuug u
    a                         a     -a       a 

>gma-MIR1514a (-30.79)   [gma-miR1514a:11-31]

cuuugcua          U                 cccuucuuguucc 
        uuUUCAUUUU AAAAUAGGCAUUggggu             u
        |||||||||| |||||||||||||||||              
        aaaaguaaaa uuuuauccguaacccua             c
auagcaac          -                 uccuuuccuuuuc 

>gma-MIR1514b (-22.03)   [gma-miR1514b:11-31]

cuuugcua          U       A       -  ucu  uuguuccucuuu 
        uuUUCAUUUU AAAAUAG CAUUggg cu   uc            u
        |||||||||| ||||||| ||||||| ||   ||            u
        aaaaguaaaa uuuuauc guaaucc gg   ag            u
auaguaac          -       c       u  uuu  ccuuaaccuucc 

>gma-MIR1515 (-43.50)   [gma-miR1515:11-32]

u    guu              CAA     U   c auuuugauucccugcaccguuauuucguuguggcau 
 aaau   caUCAUUUUGCGUG   UGAUC Gaa c                                    a
 ||||   ||||||||||||||   ||||| ||| |                                     
 uuua   guaguaaaacgcac   acuag cuu g                                    a
u    acu              -uc     u   u caaaagguguuuguauuuuaguuaccgaauuaaacu 

>gma-MIR1516 (-75.20)   [gma-miR1516:81-101]

ca                                          a a         
  uguuuggauacaaguuauaagcucuuuugagagcuucucuac g aaauauau 
  |||||||||||||||||||||||||||||||||||||||||| | ||||||| u
  acaaaccuAUGUUCGGUAUUCGAGAAAACucucgaagagaug c uuuauaua 
ag                                          g c         

>gma-MIR1517 (-135.70)   [gma-miR1517:364-387]

      -ua       c       a   -au                 auugacuaaguuuuuacagucgacauccacuagaguuuuuucgaucgacaucggucaaagcaauuuuuuagccaacaucaaucaaggcuauuuuauagccgauguuggguaggguuuuuuauucgacaucagucagggcuauuuuuuagcc 
gcuagg   uuuuuga cgacauu gac   gacuauuuuuagucgac                                                                                                                                                       a
||||||   ||||||| ||||||| |||   |||||||||||||||||                                                                                                                                                        
ugaucc   aAAAGCU GCUGUAA CUG   CUGAuaaaaaucgguug                                                                                                                                                       a
      caa       U       -   GUU                 caguuggauuuuuuaggaucguccgcaacuguuuuuuuagauagaucauagcugauuuuuuaucgaaccagcuacggcugguuaucuuggaugggcuacagcugacuuuuuguaguaaucaguuacaaccgacuuuuuagagaucagcuuc 

>gma-MIR1518 (-36.20)   [gma-miR1518:11-31]

augug     -    -    AAA          uc   acauaggucaugagaucaacauugacagauuua 
     caaaa UGUG UUGU   GUGAAUAUCA  ggc                                 c
     ||||| |||| ||||   ||||||||||  |||                                 a
     guuuu acac aaca   cacuuauagu  ccg                                 g
-uaag     c    u    --c          --   auuuguaaauagcacaagagugcaguuccgacg 

>gma-MIR1519 (-86.10)   [gma-miR1519:11-32]

u      -a                     AUUccguuaaauuuuaaaguaacaccguuagugagaucaauuuuagugccacgugaacuauccaauauagcacuaaaggaugacgugacaugacauguggacg 
 aucuuu  caUAAGUGUUGCAAAAUAGUC                                                                                                       u
 ||||||  |||||||||||||||||||||                                                                                                       g
 uagaaa  guauucauaacguuuuaucag                                                                                                       u
-      ac                     agauugaauuuucuacagucuuuagcacgaauuucacagguacguaacguuuccaacacuuuacagagcaccugaaaguuuuacugcacuguagaaaauccuc 

>gma-MIR1520d (-42.30)   [gma-miR1520d:80-101]

---       c a    a                 auguuaac  u       -     a 
   augauga u ucac ugucauguucugauugg        uc augaaaa aacaa u
   ||||||| | |||| |||||||||||||||||        || ||||||| ||||| a
   uacuauu A AGUG ACAGUACAAGACUAacu        ag uacuuuu uuguu c
acc       A C    C                 --------  u       g     a 

>gma-MIR1536 (-57.40)   [gma-miR1536:211-231]

-------------------------gagaggauagcaauauugucucugcuuuaauuuaucaccacauuccuucucaucucaagagaugcuuugcuuauugu     au  c   g   u   cauau    gu 
                                                                                                      gccau  uc caa aga uua     guuu  a
                                                                                                      |||||  || ||| ||| |||     ||||   
                                                                                                      cggua  ag guu uuu aau     cgag  a
guacguacugAUUUGUGUAAACAGAGACGAAcuaacaaauuguuguauggguguauuauauaguagauuuaugagaguacucccguaacauauuuuaaaagu     --  u   g   u   --uuu    ag 

>gma-MIR1520a (-63.00)   [gma-miR1520a:118-140]

aaaggaauguugaccgucaugugucauguucuu                --                   ---     gaaa    -ca   c 
                                 auuggaugaugacugu  ugugucauguucugauugg   ucaau    auaa   aug a
                                 ||||||||||||||||  |||||||||||||||||||   |||||    ||||   ||| u
                                 uaaccuacuACUGACA  ACAUAGUACAAGAUuaacc   aguug    uauu   uac u
--------------------------------a                GU                   uac     -agg    uuc   u 

>gma-MIR1521 (-70.30)   [gma-miR1521:11-30]

---------------------------------------------------uacuca              AA           c  a           c          u  -aa   u 
                                                         uugaCUGUUAAUGG  AAUGUUGAcug ca augucauaauc uauuggaugu aa   uug a
                                                         ||||||||||||||  ||||||||||| || ||||||||||| |||||||||| ||   |||  
                                                         aacugacaauuacc  uugcaauugac gu uacaguauuag auaaccugca uu   agc u
cuuguaauuaacaauaacuuauuacaacugacaauacacaguguuaaaauaaccugc              ca           a  a           u          c  aaa   a 

>gma-MIR1522 (-27.00)   [gma-miR1522:11-30]

uacagacaaaU     GC       G       - c      cu   aaugcauaaaauaguuaauguuuuauaauuaguaugauuacccgugu 
           UUAUU  UUAAAAU AAAUuaa c aacuuu  uaa                                               a
           |||||  ||||||| ||||||| | ||||||  |||                                                
           aauaa  aauuuua uuuaauu g uugaga  auu                                               a
-auaaauaauu     ga       a       u a      au   aauaaaaguuagugaaauaguacuuaaucuuuuuaguguuacaaugu 

>gma-MIR1523 (-42.80)   [gma-miR1523:11-30]

aggacc    A  GG              ----------     c      uaa 
      cauu UG  AUAAAUGUGAGCUC          Aggag gaugaa   a
      |||| ||  ||||||||||||||          ||||| ||||||    
      guaa ac  uauuuacacucgag          uccuc cuacuu   u
-----a    a  uu              cccucauuac     a      ucc 

>gma-MIR1524 (-145.60)   [gma-miR1524:306-326]

-----   acuua         a       cacucu                       c        agacgauagcagacucaagaaagacguuuccuucccagauccuucuagaccauuugcaaaccgucuccuuccccgaauccauucuccaaacccucgauccuugagg 
     gcg     uuggaguuc uucuucg      cucggaaaccacuuguuuccaau aucuaauc                                                                                                          a
     |||     ||||||||| |||||||      ||||||||||||||||||||||| ||||||||                                                                                                           
     cgc     aaCCUCAAG AAGGAGC      GAGCcuuuggugaacaaagguua uggauuag                                                                                                          g
caacc   -----         G       ----CU                       u        uccuuucaucaaggauauuaagggaaagucugaguacuucugcgaguacgagguggcgcugccguguuaacugccgccucuggccucgcggcagugccaccaccuc 

>gma-MIR1525 (-128.20)   [gma-miR1525:11-31]

uauauaauuuU                      c                              c               c                  cauuuuccuuaagcauuuuagggacuaaaacuguugau 
           GGGUUAAUUAAGUUUUUAGUcc uauaaauauucauaguuuuguuuuuagucc uacaaaauaagauca acuuuuuaguccuuguga                                      g
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||                                       
           ccuaauuaauucaaaaaucagg auauuuauaagugucaaaacaaaaaucagg auguuuuauuuuagu ugaaaaaucagggauauu                                      a
-uuuuuaauau                      -                              a               a                  uaaaaaaguagccgugaaaaucagggacauuuuuuuaa 

>gma-MIR1520b (-71.91)   [gma-miR1520b:97-119]

c                           a                  -------    -ccaa  ac 
 gugucacguucuuauugaaugaugacu uuacgugucauguucuga       ucga     ug  a
 ||||||||||||||||||||||||||| ||||||||||||||||||       ||||     ||  a
 uacagugcaAGAAUAAUUUACUACUGA AGUGcacaguacaagacu       agcu     ac  c
a                           C                  aaccuac    uaaua  aa 

>gma-MIR1526 (-89.10)   [gma-miR1526:143-164]

----aacaaaaau    u                  a           ----     c    c             agag     c     a 
             uuua uuuucuucuuccggauca guugauccgga    ucuuc ggau aacuugauccgua    acuuc ggauu a
             |||| |||||||||||||||||| |||||||||||    ||||| |||| |||||||||||||    ||||| ||||| g
             GAAU AAAAGGAGAAGGCCuagu caacuaggcuu    agaag ccua uugaacuaggcau    ugaag ccuag u
uuuuaauaggAAC    U                  -           ucag     a    a             ----     a     u 

>gma-MIR1527 (-101.40)   [gma-miR1527:212-231]

                               a      auuucaacaugguaucagagccauugaaccacaugcuaucagguuuccgcuaucgggccaccccccauuuaugucuacgaa 
cucacaagccgguuuuguaagguugaguuag ccucaa                                                                                 c
||||||||||||||||||||||||||||||| ||||||                                                                                 c
gaguguucggCCAAAACAUUCCAACUCAAUc ggaguu                                                                                 a
                               c      gaaauauuuauauaacagucugguacaggauaggcuacacccugagaauugugugggggagugcuagucgugauaauccaa 

>gma-MIR1528 (-83.80)   [gma-miR1528:11-33]

ugauuguugaAUAGAUUAGAUCAAUAUAUUAGUaaguuuuuauuagaccaagaugagagucaguuuuua          c   c      c           c      ga c          guuauguuuguaacuauuaaaa 
                                                                     uuggauuaau ugu auaucu aaauuuuauuu auuuaa  a aaaauauaau                      a
                                                                     |||||||||| ||| |||||| ||||||||||| ||||||  | ||||||||||                       
                                                                     aaccugauua aca uauggg uuuaaaauaaa uaaauu  u uuuuauauua                      a
---------------------------accaaccacuuaucuaaucuaguuuuauaguuauucaaagau          a   a      u           a      uc a          aauuaaaaguagaagaggaacu 

>gma-MIR1529 (-44.92)   [gma-miR1529:169-191]

    ag        c         cua    cacuauuuuauuaaacguuu       ca    acga          ca  a   -       -       aacguuaa 
aauu  auguuaau auuaauugu   ccuu                    aucguua  uguc    uuuuauuaaa  uu auu uuaugua ccuaauu        c
||||  |||||||| |||||||||   ||||                    |||||||  ||||    ||||||||||  || ||| ||||||| |||||||         
uuaa  ugcaAUUG UAAUUAACA   GGAA                    Uagcaau  acag    aaaauaauuu  aa uaa agugcgu ggauuaa        u
    cu        C         -AA    ------------------AU       uc    caug          ac  c   u       a       aauaaccu 

>gma-MIR1530 (-27.20)   [gma-miR1530:119-139]

gca       auauua    -aagu              auuuaauuuuuuuuaauuuauuauauuuuuauaauuuu 
   aaauaua      auau     uuuaugugaaaaua                                      a
   |||||||      ||||     ||||||||||||||                                       
   uuuguau      UAUA     AAAUACACUUUUau                                      u
-ua       -----g    AAAUU              cuuaaauuagaauauauaauauaaaauuuucuauuaua 

>gma-MIR1531 (-64.40)   [gma-miR1531:83-105]

-------------                      a   a      u        ----     u 
             aagucuucccauauggacgaag gau gguaaa guugaagu    aggcc g
             |||||||||||||||||||||| ||| |||||| ||||||||    |||||  
             UUCAGAAGGGUAUACCUGCUuc cua ccauuu caacuucg    uuugg u
cuucagcucuCUG                      c   a      c        guuc     g 

>gma-MIR1532 (-54.90)   [gma-miR1532:120-142]

------ucaacuca         g        agcgcgugcuaaacgagacguuaagcacgagagucagaauccguua 
              uucucucgc uagcgugu                                              c
              ||||||||| ||||||||                                               
              AGGAGAGCG AUCGCACA                                              u
acacgaaucgCUCG         A        Agacacagucaaaacaggugaaucagacacgacacgcgacacgcgc 

>gma-MIR1520c (-44.20)   [gma-miR1520c:108-130]

   a                ua    g     ucaauaaaaauaauaauacauuuuauuuuuuauggag 
aug ugacugucacguguca  uucu auuga                                     u
||| ||||||||||||||||  |||| |||||                                      
uac auugacAGUGCACAGU  AAGA UAACU                                     u
   a                GC    A     Uacuacaaacaguacacaguacaagacuaaccuacag 

>gma-MIR1533 (-26.36)   [gma-miR1533:112-130]

uguaa      ca   -         a         cuaucaucaucaccu     acu    cca    c       uc 
     auuauu  uau guuauuauu uuauuguca               uuauu   auca   ucac aucauug  u
     ||||||  ||| ||||||||| |||||||||               |||||   ||||   |||| |||||||  c
     ugguaa  auA UAAUAAUAA AAUAAUAgu               aauaa   uagu   ggug uaguaac  u
-----      uc   G         A         ---------------     --c    acc    a       ua 

>gma-MIR1534 (-86.00)   [gma-miR1534:11-30]

-- a       a      ---                 ca   c                   c         cuuaaaugugucacauaggcuuuuucauuaacgguaacaaauggacagauu 
  g uuaaauu UAUUUU   GGGUAAAUAGUCAUuuu  ucc ugaauguguagagcgcuaa aaauucguc                                                   u
  | ||||||| ||||||   |||||||||||||||||  ||| ||||||||||||||||||| |||||||||                                                    
  c gguuuga auaaaa   cccauuuauuaguaaaa  agg acuuacacgucucgugauu uuuaagcag                                                   g
ua -       -      uuu                 ac   a                   a         aggcuuucuauuuuuaaguuuaaaaucagagauuuucacuuuuuuuacgcu 

>gma-MIR1535 (-50.04)   [gma-miR1535:68-86]

uaa    c                     -     aaagaa   agagug 
   gagg cuagacaucaccacaaacaag ucacc      gga      u
   |||| ||||||||||||||||||||| |||||      |||       
   uucc gaUCUGUAGUGGUGUUUGUUC agugg      ccu      c
ucc    a                     u     -----g   aagaca 

>hsa-mir-1537 (-28.60)   [hsa-miR-1537:40-61]

              u a         ccu 
acagcuguaauuag c guuuucugu   g
|||||||||||||| | |||||||||   u
UGUUGACAUUGAUC G CAAAAgaca   c
              U C         cac 

>hsa-mir-1538 (-42.30)   [hsa-miR-1538:39-61]

             a a      u    uc 
gggaacagcagca c ugggcc cgcu  c
||||||||||||| | |||||| ||||  u
UCCUUGUCGUCGU G GCCCGG gcgg  g
             C G      C    cc 

>hsa-mir-1539 (-25.10)   [hsa-miR-1539:30-50]

-   -    c   c      uagc  g 
 ggc ucug ggc ugcagg    gc a
 ||| |||| ||| ||||||    ||  
 CCG AGAC CUG GCGUCC    Ug a
C   U    C   C      ----  a 

>hsa-mir-103-1-as (-16.66)   [hsa-miR-103-as:1-23]

UCAUA  -C  G    A        gaucca 
     GC  CU UACA UGCUGCUu      u
     ||  || |||| ||||||||      a
     cg  ga augu acgacgga      u
--agc  aa  a    c        acaacg 

>hsa-mir-103-2-as (-19.36)   [hsa-miR-103-as:1-23]

UCA    -C  G    A        gaccug 
   UAGC  CU UACA UGCUGCUu      a
   ||||  || |||| ||||||||      a
   gucg  ga augu acgacgga      u
--a    aa  a    c        acaucg 

>mdo-mir-1540 (-39.60)   [mdo-miR-1540:10-29]

uagc              A     C   Uc ---a  cc 
    gggggUGAUUCCAU GAGCG AUG  c    uc  c
    |||||||||||||| ||||| |||  |    ||   
    cccccacuaaggua cucgu uac  g    ag  a
acca              c     a   ga accg  ag 

>mdo-mir-1541 (-24.00)   [mdo-miR-1541:11-32]

a     c -g    UG         GGA  UG c 
 uggag a  aUGG  UGCUCGUUU   UG  G a
 ||||| |  ||||  |||||||||   ||  |  
 accuc u  uacc  acggguagg   gc  u g
g     c ag    cu         -ga  gu u 

>mdo-mir-1542-1 (-20.70)   [mdo-miR-1542:47-67]

ccg    cu    caua    uu   -     guauu 
   gugc  ggca    ggag  uca uaaau     u
   ||||  ||||    ||||  ||| |||||      
   caCG  CCGU    CCUC  AGU AUuua     u
uga    AU    --AA    -U   U     auuac 

>mdo-mir-1542-2 (-30.90)   [mdo-miR-1542:51-71]

ua         cu    caua    cu   -      u  g 
  guacagugc  ggca    ggag  uca uaaaug gu u
  |||||||||  ||||    ||||  ||| |||||| ||  
  cgugucaCG  CCGU    CCUC  AGU AUuuau ua u
uc         AU    --AA    -U   U      u  g 

>mdo-mir-1543 (-30.00)   [mdo-miR-1543:47-68]

    -   cuu      acug   g -           cu 
gaua gug   ugcacc    aga u ggauuaacuuc  u
|||| |||   ||||||    ||| | |||||||||||   
cugu cAC   ACGUGG    UCU A CCUGAUUgaag  u
    a   ---      ---A   G U           ua 

>mdo-mir-340 (-41.10)   [mdo-miR-340:27-48]

uggac  u   ca          a   A                    ggua 
     gg gau  aggugugacu uaA GUAAUGAGAUUGAUUUCUGU    u
     || |||  |||||||||| ||| ||||||||||||||||||||     
     cu cua  ucuacacuga auu cauuacuuugacuaaaggua    a
----u  u   -a          c   c                    aaug 

>mdo-mir-1544 (-39.30)   [mdo-miR-1544:13-34]

      u  c  UGCAC            U  C  uu acu 
agcagc gc cc     CCAGGGAUAGGA AG Gg  c   u
|||||| || ||     |||||||||||| || ||  |    
ucgucg cg gg     ggucccuaucuu uc cc  g   g
      c  c  -ucau            u  -  cc aag 

>mdo-mir-1545 (-31.80)   [mdo-miR-1545:46-66]

c    c        c      a  u   a  --  ac 
 cgga acagugcg agggau ga aag gg  uc  u
 |||| |||||||| |||||| || ||| ||  ||   
 gccu UGUCACGU UCCCUA CU UUC cc  ag  u
c    u        -      C  -   A  ua  au 

>mdo-mir-1546 (-40.90)   [mdo-miR-1546:16-37]

au      cc     UC         C    A      ug ga 
  gccuug  ggaaa  AGGGAUUCU AGGG UGGAAg  a  c
  ||||||  |||||  ||||||||| |||| ||||||  |  a
  cggaac  ucuuu  ucccuaaga ucuc accuuc  u  a
cc      uu     ua         c    c      ca aa 

>mdo-mir-1547 (-35.60)   [mdo-miR-1547:17-38]

uaa     g  ug   U    G    UU         -U  --a  u 
   agaac ua  aug AUCA AGUC  GGGUCCUUG  gu   ga g
   ||||| ||  ||| |||| ||||  |||||||||  ||   ||  
   ucuug gu  uac uagu ucag  ccuaggaac  ca   uu c
ccc     g  gu   -    -    uc         uu  gag  u 

>mdo-mir-1548 (-30.60)   [mdo-miR-1548:37-58]

    a      - a     cac      gg 
gagg gggcuc c gcggg   gcacgc  g
|||| |||||| | |||||   ||||||   
uuCC CUCGGG G CGUCC   CGUgug  c
    C      C A     -UA      gu 

>mdo-mir-1549 (-31.10)   [mdo-miR-1549:40-60]

-cuc        c    - ua     u   u 
    gccgggcu guag g  gaagc gag u
    |||||||| |||| |  ||||| ||| u
    UGGCCCGA CGUC C  CUUcg uuu u
ucgA        A    C GC     u   g 

>gga-mir-1550 (-41.30)   [gga-miR-1550-5p:23-43] [gga-miR-1550-3p:57-79]

  agaccu      g        GA    -      -   C    gcua 
cc      gugcag cuugggcU  UGGG GGUGUA GUG AGCA    u
||      |||||| ||||||||  |||| |||||| ||| ||||    u
gg      cacguc gaaucUGG  ACUC UCACAU CAC UCgu    u
  gcccac      -        UC    G      U   U    acua 

>gga-mir-1551 (-32.20)   [gga-miR-1551:15-37] [gga-miR-1551*:57-78]

--a     u    u  CU        AAA     U    u  ga ua 
   ggagu acua ag  AGCAGCAA   GAACU CAGA gu  u  a
   ||||| |||| ||  ||||||||   ||||| |||| ||  |   
   ucucg ugau UC  UCGUCGUU   UUUGA GUcu cg  g  c
uuc     -    -  UU        GUG     -    -  ag uu 

>gga-mir-1552 (-48.20)   [gga-miR-1552-5p:15-37] [gga-miR-1552-3p:53-73]

      u    a          C    A     G    gag 
ucuaca gggg ggUUAGUGCG GGUA GCUAG GUGu   c
|||||| |||| |||||||||| |||| ||||| ||||   u
aggugu cccc UCAGUCACGU UCGU CGAUC cacg   g
      -    G          C    -     g    aca 

>gga-mir-1553 (-41.90)   [gga-miR-1553*:26-49] [gga-miR-1553:61-82]

----ga   cc   u   ag     a    G  -       G      U  -U U ug 
      gga  agu ggc  cucuc cacA UC CUGUCCU UCUACC AC  G c  u
      |||  ||| |||  ||||| |||| || ||||||| |||||| ||  | |   
      cuu  uca ccg  gagag gUGU AG GACAGGA GGGUGG UG  c g  c
uuucga   --   -   -g     g    -  U       -      -  Uc u uc 

>gga-mir-1554 (-23.60)   [gga-miR-1554:15-35]

     gacuu ug G      A  -A    -U     cugc 
ugugu     g  g CAGGUG UG  GGCU  UGCUG    a
|||||     |  | |||||| ||  ||||  |||||    g
auaca     c  u gucuac ac  ucgg  acgac    u
     ---au gu a      -  gg    uu     cuua 

>gga-mir-1555 (-36.90)   [gga-miR-1555:54-75]

ga        a    -     c  -uuc        gu  ucc 
  agguguga guca gcaaa cc    acccugcc  gu   c
  |||||||| |||| ||||| ||    ||||||||  ||   u
  ucuacgcu cAGU UGUUU GG    UGGGACgg  cg   u
-c        a    G     U  UUAU        ac  uac 

>gga-mir-1556 (-26.90)   [gga-miR-1556:51-72]

gua      uc    g     c    acu  u  c      a 
   acugug  uuca acuuc acuu   gc cu cguauu a
   ||||||  |||| ||||| ||||   || || |||||| c
   ugguau  aagU UGAGG UGAA   CG GA GUauaa u
uac      ga    G     A    GGU  -  C      c 

>gga-mir-1557 (-63.00)   [gga-miR-1557:40-59]

           c                   cag 
gugaggcaauu cagccgcucagccgacggg   g
||||||||||| |||||||||||||||||||    
cacuccguuaa GUCGGCGAGUCGGCUGCCC   c
           C                   acu 

>gga-mir-1558 (-35.40)   [gga-miR-1558:59-78]

   ugc        --      uacu      gacaagaggggac 
cgc   uccagagc  ccguua    cagcag             a
|||   ||||||||  ||||||    ||||||              
gcg   ggGUCUCG  GGUAGU    GUCGUC             g
   -ua        AG      ----      acucgucgggacg 

>gga-mir-1559 (-25.34)   [gga-miR-1559:10-31]

   a   cu        U      CU     caagaa 
uag cuc  UUCGAUGC UGUAUG  ACUCC      u
||| |||  |||||||| ||||||  |||||       
auc gag  gagcuacg auguac  ugagg      g
   a   ac        u      au     acaauc 

>gga-mir-1560 (-49.90)   [gga-miR-1560*:24-45] [gga-miR-1560:61-82]

   uu   --ca ug  ug    ug   -     AG      GGC     cg g 
ucc  agu    c  cg  gggg  GCG GCGCG  CAGAGA   GCUgc  u u
|||  |||    |  ||  ||||  ||| |||||  ||||||   |||||  |  
agg  ucg    g  gc  cuuc  UGC CGCGC  GUCUCU   CGacg  a c
   -u   ccuc gu  gu    CU   U     AG      --A     aa c 

>gga-mir-1561 (-51.60)   [gga-miR-1561:10-30]

        --   -  G UUU       CU         -c    g 
ccgccucc  gGC CG G   GCGGCCG  UUUuguucc  ggcc c
||||||||  ||| || |   |||||||  |||||||||  ||||  
gguggggg  ccg gc c   cgccggc  aaggcgagg  ucgg g
        ug   u  g ---       --         cu    g 

>gga-mir-1562 (-46.50)   [gga-miR-1562:22-43] [gga-miR-1562*:62-83]

aucaa    c g   --   g          GAUGGA     U   u    g g 
     caag g ggu  gca cuGCACUGUA      GGGGC GCa gaag u g
     |||| | |||  ||| ||||||||||      ||||| ||| |||| |  
     guuc c uca  cgu gACGUGACGU      CCCCG UGU cuuu a a
---ug    a g   cu   g          -AUGUG     -   -    g u 

>gga-mir-1563 (-16.30)   [gga-miR-1563:9-32]

   ccaa    CAU   GAG   -     -GAA  ug 
agc    aGCA   GAU   GAA GCACU    Ac  a
|||    ||||   |||   ||| |||||    ||  c
ucg    ucgu   cua   cuu cguga    ug  u
   --ag    aac   --a   a     agua  uc 

>gga-mir-1564 (-29.60)   [gga-miR-1564:6-28] [gga-miR-1564*:47-68]

gugcu     G A        UA     ag g ug 
     GCAAU A CACGGCAG  GAGGU  c c  u
     ||||| | ||||||||  |||||  | |  g
     UGUUG U GUGCCGUC  CUCcg  g g  g
-caaG     G C        UC     aa - uu 

>gga-mir-1565 (-54.70)   [gga-miR-1565:57-79]

                c   g   gucg   ---      guc 
gggggcagagccgggc cgg ccc    cgg   ggggag   c
|||||||||||||||| ||| |||    |||   ||||||   u
cccUCGUUUUGGUCCG GCU GGG    GCc   ccccuc   g
                U   -   ---A   uag      auu 

>gga-mir-1566 (-50.40)   [gga-miR-1566:49-69]

   u  a     -aa         -  ga c     -a  ga 
gca cc cgggg   ugagagccg cc  g cccgc  gg  g
||| || |||||   ||||||||| ||  | |||||  ||   
cgu gg gcccc   GCUCUCGGC GG  C GGGCg  cc  c
   c  -     gAG         A  -A A     ag  ga 

>gga-mir-1567 (-43.10)   [gga-miR-1567:55-76]

   c cu   -      uu          u ----a   -cu ug u 
ggc c  gga ggggac  ggcagccaug g     agg   g  c g
||| |  ||| ||||||  |||||||||| |     |||   |  |  
ucg g  ccu ccCUUG  CCGUCGGUAC C     ucc   c  g u
   u uc   a      -U          U GUCAG   auu gu g 

>gga-mir-1568 (-22.86)   [gga-miR-1568:43-63]

  -aa       gu   gg        ucacuu 
gc   cugccuu  gau  gugaguuu      u
||   |||||||  |||  ||||||||      u
cg   GACGGAA  CUA  UACUCAGg      u
  aug       GU   GA        uccuuu 

>gga-mir-1569-1 (-15.12)   [gga-miR-1569:46-67]

u    u  -cu     ac       -uuucaa  a 
 uguu gu   gcaac  cuuaagc       ag a
 |||| ||   |||||  |||||||       || c
 acGA CG   CGUUG  GGGUUUG       uc u
a    -  UCU     CA       Uccuccg  c 

>gga-mir-1569-2 (-15.12)   [gga-miR-1569:46-67]

u    u  -cu     ac       -uuucaa  a 
 uguu gu   gcaac  cuuaagc       ag a
 |||| ||   |||||  |||||||       || c
 acGA CG   CGUUG  GGGUUUG       uc u
a    -  UCU     CA       Uccuccg  c 

>gga-mir-1570 (-32.70)   [gga-miR-1570:61-83]

ggcaucccuga c   -     -         u   cu   a   cu       
           g gcu cucuu cauuuuucu cau  ccu cug  auguga 
           | ||| ||||| ||||||||| |||  ||| |||  ||||| c
           c cga gagAG GUAAGAAGA GUG  GGA Gac  uacaca 
---ccuaucua a   a     U         C   UG   A   --       

>gga-mir-1571 (-42.90)   [gga-miR-1571:59-80]

   c ua   -a       c         ccucc     u   c  uuc 
agg g  ggg  cacagca ugcugucug     gaagc gag ug   a
||| |  |||  ||||||| |||||||||     ||||| ||| ||    
ucc c  ccc  gugucgU ACGACGGAC     CUUUG cuc ac   g
   a ua   ac       C         CUAUC     U   -  uac 

>gga-mir-1572 (-45.00)   [gga-miR-1572:58-78]

    g  -         cc    g    u       cug     uuau 
gcgg ac ugcaggagg  cagg ccgu ugucagg   uccug    u
|||| || |||||||||  |||| |||| |||||||   |||||    c
uguu ug acguucuuu  GUCC GGCA ACAGUCC   AGggu    c
    g  u         -C    G    C       --A     ucgu 

>gga-mir-1573 (-21.90)   [gga-miR-1573:40-59]

-gcca      gac       -cu - g     u  cc 
     gaucag   cucagac   c u ugcag gc  u
     ||||||   |||||||   | | ||||| ||  c
     cugguu   gagUCUG   G G ACGUC UG  u
cgaga      ---       ACC U G     U  Ug 

>gga-mir-1574 (-30.30)   [gga-miR-1574*:12-32] [gga-miR-1574:47-68]

    caau   C G    -       U     --A  u 
cagc    gcu U UGAC UUCUCCU GUCAG   gc g
||||    ||| | |||| ||||||| |||||   ||  
gucg    CGA G ACUG AGGAGGA CAguc   ug g
    ucUU   A G    U       -     aua  g 

>gga-mir-1575 (-38.10)   [gga-miR-1575:28-48]

gua  a  cgu     gcuuc ug u      AGCAC     AG    u  agu 
   gg ug   gcugu     g  g gCUGGC     GUAGG  CAGG ca   a
   || ||   |||||     |  | ||||||     |||||  |||| ||    
   cc ac   cgaca     c  c cgaccg     caucu  gucc gu   g
-ca  a  --u     ---aa gu c      aguca     ca    u  cuu 

>gga-mir-1576 (-68.30)   [gga-miR-1576:54-74]

       cugc   -    g  ----               ------     g 
cgccgcg    agg gcgu cc    ccgcuccgcccgccc      cgucg g
|||||||    ||| |||| ||    |||||||||||||||      |||||  
gcggcgc    ucc cgua gg    GGCGAGGCGGGCGGG      gcggc u
       --ca   u    g  cCAC               CUCgac     a 

>gga-mir-1577 (-28.70)   [gga-miR-1577:50-71]

     ---------      cg     cu      cuu       uc 
augcu         uucucc  uuucc  ucucug   uuugcuu  u
|||||         ||||||  |||||  ||||||   |||||||   
uacga         AAGAGG  GAAGG  GGGGAC   aaauggg  g
     ucgagacuu      AU     -U      -UC       uu 

>gga-mir-1578 (-27.00)   [gga-miR-1578:44-65]

    u   u     c  -ua     c  c      
ccag guu guguc ga   gcgca cg gugcc 
|||| ||| ||||| ||   ||||| || |||| g
ggUC CGA CACAG CU   CGUGU gu uacgu 
    U   -     U  UGC     c  c      

>gga-mir-1579 (-34.30)   [gga-miR-1579:3-23]

   G    -   -AAG      G  c   -c      
gcC UGGC GGG    GGAUGG CG gug  gcggg 
||| |||| |||    |||||| || |||  |||| c
cgg accg ccc    ucugcc gc cac  cgccu 
   -    a   gccg      -  -   uc      

>gga-mir-1580 (-31.76)   [gga-miR-1580:48-68]

u  ga    ug u   aa        u   gggaaa 
 gg  agcg  g uac  ggggagcc ggg      g
 ||  ||||  | |||  |||||||| |||      g
 cc  UUGC  C AUG  CUCUUCGG Ccc      a
a  ac    GU C   -G        -   aaagua 

>gga-mir-1581 (-49.80)   [gga-miR-1581:12-34]

   g  c  -u  G      A   G  G      C    g  u 
gcg ga gc  gC AGCCGA GGG UG GCGCUG gugg ug c
||| || ||  || |||||| ||| || |||||| |||| ||  
cgc cu cg  cg ucggcu ccu gc cgcggc cacu gc c
   g  c  uc  -      c   g  g      c    g  g 

>gga-mir-1582 (-30.70)   [gga-miR-1582:58-77]

     --ua  -         -u      gcua      agc   u g 
caaag    ug cuguguuuu  cuuucu    ucagcc   ucu g a
|||||    || |||||||||  ||||||    ||||||   ||| |  
guuuc    ac GACACAAGA  GAGAGA    AGucgg   agg c a
     uaca  u         CC      ---A      --a   u c 

>gga-mir-1583 (-71.10)   [gga-miR-1583:52-71]

u      -    agg      g   --c  u               -   g 
 cgcugg gcgg   gcgcgg ucg   cu ccgucccgcggcucu cgg c
 |||||| ||||   |||||| |||   || ||||||||||||||| |||  
 gcggcc ugcc   cgugcc agc   gA GGCAGGGUGCCGGGA GCc g
g      g    --g      g   cuc  C               U   g 

>gga-mir-1584 (-30.10)   [gga-miR-1584:2-21]

      ------UG       --  U    uc  uu 
gCCGGG        GGGCUGG  GC GGGc  ug  c
||||||        |||||||  || ||||  ||   
uggccc        cccgauc  ug cccg  ac  u
      uuuuuuca       gu  c    -c  ug 

>gga-mir-1354 (-26.50)   [gga-miR-1354:13-33]

      - u    CA GG    --G      -UGA   u 
ccuggg c gggc  U  UGAU   AUGUGC    AGc g
|||||| | ||||  |  ||||   ||||||    |||  
ggauuu g cucg  g  acug   uacacg    ucg u
      u u    ag aa    aua      uggg   g 

>gga-mir-1585 (-47.90)   [gga-miR-1585:18-41]

  a    u       g A U     GG  UG  UAA     -  ga 
gc cagc cuggggg c G GCCCA  UG  GU   UCCUG cu  u
|| |||| ||||||| | | |||||  ||  ||   ||||| ||  g
cg gucg gacuccc g c cgggu  ac  cg   aggac ga  a
  g    u       - a u     gg  gu  --g     u  ag 

>gga-mir-1586 (-49.80)   [gga-miR-1586:20-42]

  u  g     u        -  U    -   G  U   U      --a g 
gc ca gugcu uucgggaC AG CAGC UGU GG GGG GGCAgc   g g
|| || ||||| |||||||| || |||| ||| || ||| ||||||   |  
cg gu cacga gaguccug uc gucg acg cc ucc ucgucg   c a
  -  a     c        g  u    c   a  -   -      agg g 

>gga-mir-1587 (-43.40)   [gga-miR-1587:17-36]

    -cc  -c      c   -CU   CU   C    C     ag    g 
ggcg   gc  ggggca GGG   GGG  GGG UGGG Agcgg  cgcg c
||||   ||  |||||| |||   |||  ||| |||| |||||  ||||  
ucgc   ug  ucccgu ccu   ucu  ucc gccc ucguc  gcgc a
    caa  cu      -   ucu   uu   u    -     -g    u 

>gga-mir-1588 (-44.50)   [gga-miR-1588:25-45]

gcucccau  cc  g   u   cuC          -UUU       cgu   g 
        gg  cc cag gcc   AGGAACCAGC    CGGCUCU   ggu c
        ||  || ||| |||   ||||||||||    |||||||   |||  
        cc  gg guc cgg   uccuugguug    gucgagg   ccg u
-cgccccu  cu  -   c   -uu          ucgu       --u   u 

>gga-mir-1589 (-29.90)   [gga-miR-1589:45-66]

    ug  --ca        ac  u a       acc   g 
gcag  ug    gagaggac  uc g cagaggc   gcu c
||||  ||    ||||||||  || | |||||||   |||  
cguc  ac    cUUUUCUG  AG C GUCUCCG   Cga c
    ua  cuuc        CU  U -       --A   c 

>gga-mir-1590 (-46.30)   [gga-miR-1590:65-87]

u   u    auag   uc        a           ac     uu    g 
 gga ggaa    gua  uccagaga caguuuguccc  uuguu  ugac u
 ||| ||||    |||  |||||||| |||||||||||  |||||  ||||  
 ccu cuuu    cau  AGGUCUCU GUUAAACAGGG  Aacga  gcug c
a   -    ---a   GA        C           --     -u    u 

>gga-mir-1591 (-29.14)   [gga-miR-1591*:10-30] [gga-miR-1591:50-70]

     -ga   G      U   U  C       augcuu 
cccau   ucU AUUCAU GCC GG UCUGCaa      c
|||||   ||| |||||| ||| || |||||||       
gggua   AGG UGGGUA CGG UC AGACguu      c
     acg   A      C   U  -       guaauc 

>gga-mir-1592 (-29.62)   [gga-miR-1592:6-27]

       CU  -     A  A        cuuuc 
cuuggCA  GC CUCAG CA CGGGUGUg     c
|||||||  || ||||| || ||||||||     u
ggaccgu  cg gaguc gu gucuacac     u
       --  c     -  c        acacu 

>gga-mir-1593 (-36.00)   [gga-miR-1593:18-38]

    a -uu      --a    CAU       GG        ga  u 
caug c   gagugg   acAC   CUGAUUU  ACACGCAu  ug g
|||| |   ||||||   ||||   |||||||  ||||||||  || c
guac g   cucacc   ugug   gacuaaa  ugugcgug  ac u
    c uuc      cua    --u       -a        -g  a 

>gga-mir-1594 (-34.00)   [gga-miR-1594:20-40]

      cugucg     c       GGAU    U    UU       g g 
gggaca      guggg aUGGUGG    GGGU GGGG  gggcuuc g a
||||||      ||||| |||||||    |||| ||||  ||||||| | u
ucuugu      uaucu uacuacu    ucca cccc  ucuggag u c
      ------     -       ----    -    uu       g u 

>gga-mir-1595 (-22.20)   [gga-miR-1595:4-25] [gga-miR-1595*:40-61]

-aauA    CG    UG    A   Cuu  aa 
     AGCA  AGUG  GUGG GCU   gg  u
     ||||  ||||  |||| |||   ||   
     UCGU  UCGU  CGCC CGA   cc  c
uuagG    CA    GU    C   Uuc  cu 

>gga-mir-1596 (-31.60)   [gga-miR-1596:14-36] [gga-miR-1596*:56-77]

u   --   u         U   UCAAU          ca gauu 
 gga  cuu guuucAUUC CCU     CCAUCUUUGU  u    u
 |||  ||| ||||||||| |||     ||||||||||  |    a
 ccu  gga cgaAGUAAG GGG     GGUGGAAAca  a    c
a   ac   c         U   -UGCC          ag aaaa 

>gga-mir-1597 (-32.40)   [gga-miR-1597*:10-30] [gga-miR-1597:46-67]

u      a       A             --   gg 
 uuuauu cAUGUUU CAGGGCUCUUCAU  Ugu  u
 |||||| ||||||| |||||||||||||  |||  c
 aaauaA GUACGAA GUCUCGAGGAGUa  acg  u
a      C       C             ua   ac 

>gga-mir-1598 (-31.94)   [gga-miR-1598:12-33]

   c     ag          GGCAAUG    -   a 
aca uucuu  AUGGUAGCAC       AGCA Ugc g
||| |||||  ||||||||||       |||| |||  
ugu aggaa  uaccgucgug       ucgu acg a
   u     ga          acuuuca    g   a 

>gga-mir-1599 (-21.20)   [gga-miR-1599:42-61]

cugguuc           a     --     g 
       uuuuuucuuuc cuucc  auuca a
       ||||||||||| |||||  |||||  
       AAAAAAGGAGG GAGGg  uaagu a
-gAAAAA           -     ga     a 

>gga-mir-1600 (-36.30)   [gga-miR-1600:46-65]

guga    ca     - ---   gg  c  g      u   a 
    ugcc  cuggu c   ccc  ug ug cagccc ggg a
    ||||  ||||| |   |||  || || |||||| ||| c
    acgg  gacua g   GGG  AC AC GUCGGG ccc u
---c    ug     a aCC   AG  A  A      U   g 

>gga-mir-1601 (-41.10)   [gga-miR-1601:50-71]

    cc           --  cg         -uu      
gucc  cagcucugcac  gc  ugcacugau   gucgc 
||||  |||||||||||  ||  |||||||||   |||| g
cagg  GUCGAGACGUG  CG  GUGUGAcug   uagcg 
    ac           GA  -A         ugc      

>gga-mir-1602 (-55.11)   [gga-miR-1602:60-81]

       gaggaga     ug      c    a     ---g     g c 
ggagcag       ugccc  ggggug ugcg agccu    cagcc c c
|||||||       |||||  |||||| |||| |||||    ||||| |  
ccucguc       acgGG  CCCCAC ACGU UCGGG    gucgg g a
       -------     UA      U    C     Ucga     - g 

>gga-mir-1603 (-48.10)   [gga-miR-1603:53-73]

u  c      u    -       g   uc       g    c  g 
 gc uggagc gcuu acagcac cag  ccagcca cugg ag c
 || |||||| |||| ||||||| |||  ||||||| |||| ||  
 cg accuug cgag UGUCGUG GUU  GGUUGGU GAcc uc g
a  -      u    C       -   -U       -    u  u 

>gga-mir-1604 (-55.90)   [gga-miR-1604:20-42]

    uc   ------  g       UG  C   G     U     A A   c 
ucug  cca      cu caggcug  GG CCA GGCUG GCUGG G cau c
||||  |||      || |||||||  || ||| ||||| ||||| | |||  
agac  ggu      gg guccgac  cc ggu ccgac cgacc c gug c
    cu   ucuccc  g       gu  u   a     -     - -   a 

>gga-mir-1605 (-37.10)   [gga-miR-1605:16-37]

         u        -    -       A      Gaag      
aagagaagu cacagAGG GUUU CAUGUGU UCUCUU    augcu 
||||||||| |||||||| |||| ||||||| ||||||    |||| g
uucuuuuua gugucuuc cgaa guauacg agagag    uauga 
         -        g    a       a      ----      

>gga-mir-1606 (-21.62)   [gga-miR-1606:44-66]

--ug   a     c   ugg   u      gaaau 
    uag ggcug ucu   guu cccucu     u
    ||| ||||| |||   ||| ||||||     c
    GUC CUGAC AGA   CGG GGGAga     a
acaA   -     A   CAA   -      aaguc 

>gga-mir-1607 (-34.26)   [gga-miR-1607:15-34]

    guga  agagAGGG       GG U     -g    a 
gucu    gg        GCGGGAG  G CGGGC  cgcc u
||||    ||        |||||||  | |||||  |||| g
cgga    cc        cguccuc  c gcccg  gcgg g
    ---g  -gguggag       gg -     ag    c 

>gga-mir-1608 (-49.30)   [gga-miR-1608:22-43]

   ca    gugccc     -     -     G    C         ga 
ucu  ucug      ccggg aUGGG ACAGU GCUG GCCCUCUgu  a
|||  ||||      ||||| ||||| ||||| |||| |||||||||  g
agg  agac      ggucc ugccc ugucg cgac cgggaggua  g
   ug    ------     g     g     a    u         ag 

>gga-mir-1609-1 (-45.60)   [gga-miR-1609:19-40]

u  -ccu            AGG   -A  -      U G    -   ug 
 ga    gggcagccagug   CUG  GG CUGUGC G UUGU cuu  u
 ||    ||||||||||||   |||  || |||||| | |||| |||   
 cu    uccgucggucac   gac  cc gacgcg c aaca gga  g
a  aaau            --g   ac  a      u g    u   cu 

>gga-mir-1609-2 (-45.60)   [gga-miR-1609:19-40]

u  -ccu            AGG   -A  -      U G    -   ug 
 ga    gggcagccagug   CUG  GG CUGUGC G UUGU cuu  u
 ||    ||||||||||||   |||  || |||||| | |||| |||   
 cu    uccgucggucac   gac  cc gacgcg c aaca gga  g
a  aaau            --g   ac  a      u g    u   cu 

>gga-mir-1610 (-45.20)   [gga-miR-1610:54-74]

      ------        ag  - g  g     --    g a  ug 
cauggc      gccgcucg  cc c ca aggcc  gccg g gc  c
||||||      ||||||||  || | || |||||  |||| | ||   
gugcug      cgGCGGGC  GG G GU UUCGG  cggc c cg  a
      uccccu        AA  U -  G     Ua    g g  ug 

>gga-mir-1611 (-39.20)   [gga-miR-1611:55-76]

    --ua  c     g     aga uu     ca    gu    g 
uacc    ca aggca acugc   c  gcccu  ccuc  ugcu c
||||    || ||||| |||||   |  |||||  ||||  |||| a
gugg    gu ucCGU UGGCG   G  CGGGA  GGag  augg c
    uuug  c     G     GAC UU     --    --    a 

>gga-mir-1612 (-34.10)   [gga-miR-1612:52-73]

         -a    a ug        cuu          uuu 
cuuuuaagc  ucca u  gcucuuuu   ucuuucuuuu   a
|||||||||  |||| |  ||||||||   ||||||||||    
ggagguucg  GGGU A  CGAGGAAA   AGGAAGgaga   u
         ac    C GU        ---          ugg 

>gga-mir-1613-1 (-28.72)   [gga-miR-1613:48-68]

       -g  a  ug     g  ug       gaaga 
ucagacu  cu gc  gaaug ac  auguagu     u
|||||||  || ||  ||||| ||  |||||||     g
agucuga  GA CG  CUUAU UG  UACAUca     g
       ga  -  GU     A  CG       aaagu 

>gga-mir-1613-2 (-28.72)   [gga-miR-1613:48-68]

       -g  a  ug     g  ug       gaaga 
ucagacu  cu gc  gaaug ac  auguagu     u
|||||||  || ||  ||||| ||  |||||||     g
agucuga  GA CG  CUUAU UG  UACAUca     g
       ga  -  GU     A  CG       aaagu 

>gga-mir-1614 (-49.10)   [gga-miR-1614:14-34] [gga-miR-1614*:50-70]

             -G  A      AC  A      agc      
gcuggaguugggu  GC UGGCAG  UC CCCUGC   ucuga 
|||||||||||||  || ||||||  || ||||||   |||| c
cgaccucgacucA  CG ACCGUC  GG GGGACg   ggaca 
             GA  -      AA  A      ---      

>gga-mir-1615 (-39.50)   [gga-miR-1615:54-76]

  c    --uc   c  cc   u  c    g     a   -     ag 
cu acac    agg cg  agg gc ucug gcagc ugc agcac  c
|| ||||    ||| ||  ||| || |||| ||||| ||| |||||   
ga ugug    ucc gu  UCC CG AGAC CGUCG ACG Ucgug  u
  c    cccu   c  UU   -  A    A     -   G     ag 

>gga-mir-1616 (-32.20)   [gga-miR-1616:58-79]

  ag      -  ca    c         a  au    u    u uc c 
ca  cagcag ag  augg agcaagcug ag  gauc caug g  c u
||  |||||| ||  |||| ||||||||| ||  |||| |||| |  |  
gu  gucguc uc  uACU UCGUUUGAC UC  CUAG GUgu c  g c
  aa      c  -c    U         G  --    -    - ga a 

>gga-mir-1617 (-36.70)   [gga-miR-1617:54-75]

    aca      -  uc      -   -     ag    uuu uc 
ccca   gcuagc ac  agcagu ucu aaggc  cuga   c  c
||||   |||||| ||  |||||| ||| |||||  ||||   |  u
gggu   cggucg ug  UUGUCA AGA UUCCG  GAcu   g  u
    --a      g  UU      U   C     GA    -uu ug 

>gga-mir-1618 (-41.00)   [gga-miR-1618:47-68]

    g  -----cu   u         u   -g   ---u  a 
cugc ug       gca ccuggcucc ggc  ucc    gc c
|||| ||       ||| ||||||||| |||  |||    ||  
gacg ac       CGU GGACCGAGG CCG  agg    cg g
    g  cucuUGU   C         C   AG   uuau  u 

>gga-mir-1619 (-47.20)   [gga-miR-1619:58-79]

uugu                       ca   gc      c  c u 
    aaguccagcagucuguauugcua  aau  ucuucu ag g c
    |||||||||||||||||||||||  |||  |||||| || | c
    uucaggucgUCAGGCAUAACGAU  UUA  AGAaga uc c a
gauc                       AC   --      c  - a 

>gga-mir-1620 (-47.60)   [gga-miR-1620:55-76]

u     au   cu                u      g   acu 
 gcaau  ggg  ugauccaaagccuguu aaguca ugg   g
 |||||  |||  |||||||||||||||| |||||| |||    
 cguua  ccc  ACUAGGUUUCGGGUAA UUCAgu acc   a
a     au   aC                U      a   cuu 

>gga-mir-1621 (-33.80)   [gga-miR-1621:8-27] [gga-miR-1621*:45-64]

u    caA -    U  CU      C     c   c 
 ucgg   C CGGC GC  CGGUGG ACcgu ucc g
 ||||   | |||| ||  |||||| ||||| ||| c
 agcc   G GCCG CG  GCCGCU UGGca agg u
g    caC C    C  -U      -     -   c 

>gga-mir-1622 (-28.00)   [gga-miR-1622:55-75]

---ga  ag    a     - ---a     au   -  --u    -  -    u 
     gc  gcau uggca g    guuag  cuc uc   ugug ag cgug g
     ||  |||| ||||| |    |||||  ||| ||   |||| || |||| a
     cg  ugua accgu c    UAGUC  GAG AG   ACAC uc guac u
cuaca  --    c     g agaG     AU   U  UAU    a  a    g 

>gga-mir-1623 (-28.90)   [gga-miR-1623:24-43]

     u  a  c  -ag   gga  C   CAC  AC      -UAc    g 
gagca ga gg au   cac   uG AGG   AG  AGGCAG    ugca a
||||| || || ||   |||   || |||   ||  ||||||    ||||  
cucgu cu cc ug   gug   ac ucc   uc  uccguc    acgu g
     c  -  a  aaa   --a  -   -aa  -a      ucca    a 

>gga-mir-1624 (-34.20)   [gga-miR-1624:48-68]

     g   aa     au     ca    a   cagca g 
cuacu cug  cccug  ggugc  ggug ugu     g c
||||| |||  |||||  |||||  |||| |||     |  
gguga gAC  GGGAC  UCACG  CCAC Aca     c a
     g   GA     GG     --    -   ----a a 

>gga-mir-1625 (-31.10)   [gga-miR-1625:12-36] [gga-miR-1625*:50-71]

  u  u   cu   AC     CUCUUC      G  g   c 
gc gu ggg  UGG  CAGGG      CUGCUG CU guu c
|| || |||  |||  |||||      |||||| || |||  
cg cg ccc  ACC  GUCCC      GACGAC Ga uag u
  u  u   UU   --     -UAUAA      -  a   g 

>gga-mir-1626 (-35.30)   [gga-miR-1626*:16-39] [gga-miR-1626:56-77]

  u       -      U    U     A     -U  GC ga  a 
ag guguuga ugccaU UCCA GGCAG CUUUC  AG  U  ag u
|| ||||||| |||||| |||| ||||| |||||  ||  |  ||  
uc cguaacu augGUG AGGU CCGUU GAAGG  Uc  a  uc u
  -       u      C    C     -     UC  ua ag  u 

>gga-mir-1627 (-23.50)   [gga-miR-1627*:5-25] [gga-miR-1627:44-65]

    --GA       U     -  -A    guua  uc 
gucu    AGUGACA GUGGU UG  UGGc    ac  u
||||    ||||||| ||||| ||  ||||    ||   
uaga    UCACUGU CAUCG AC  ACcg    ug  u
    gUGG       -     C  CG    ---a  uc 

>gga-mir-1628 (-32.20)   [gga-miR-1628:58-79]

   uucu     ---ca ug  a         cucaac   c    -  gg 
ggc    ggagg     g  ag ucacaacag      uuc uucu gu  g
|||    |||||     |  || |||||||||      ||| |||| ||   
ccg    ccucu     c  uC AGUGUUGUC      GAG Aaga ca  c
   ---u     cuuug gu  C         CUUCUC   A    a  aa 

>gga-mir-1629 (-39.50)   [gga-miR-1629:27-47]

  a      u  uu  -uu  a     U      GG    --    U 
gg uggcug gu  gc   ug agcuc GCUGUC  UGGG  UUUG U
|| |||||| ||  ||   || ||||| ||||||  ||||  |||| C
cc gucgac cg  cg   gc ucggg cgacgg  accc  ggac U
  a      u  -u  ugu  c     c      ga    cu    g 

>gga-mir-1630 (-24.50)   [gga-miR-1630:36-57]

u  g      u             aaa 
 uu ggcuuu guuucuucuuucu   g
 || |||||| |||||||||||||   g
 AA UCGAAG CAAAGGAGAAAgg   g
A  G      U             agg 

>gga-mir-1631 (-35.20)   [gga-miR-1631:15-36]

        uua    AA -U    A  U   -AC      
gcucugga   gcgA  C  GGCG CG GGG   GGUCa 
||||||||   ||||  |  |||| || |||   |||| c
uggggccu   cgcu  g  ccgc gc ccc   ccagc 
        -cc    cc uc    -  -   ggc      

>gga-mir-1c (-17.30)   [gga-miR-1c:12-33]

      g   cUG      A  -    U  G      a 
ggcuca ugg   GAAUGG AA GCAG AU UAUuuu u
|||||| |||   |||||| || |||| || ||||||  
ucgagu acu   uuuauu uu cguu ua auaaaa g
      -   -ua      a  a    -  g      u 

>gga-mir-1632 (-34.00)   [gga-miR-1632:23-45] [gga-miR-1632*:56-78]

ggaca    aaagaa       -U   U   UU        C    uga 
     uccc      gccugaa  GCU GUU  UGGAUGAG UUGC   c
     ||||      |||||||  ||| |||  |||||||| ||||    
     aggg      uggacUU  CGA CAA  ACUUACUC AAug   u
--cca    -----a       UU   C   UU        -    uca 

>gga-mir-1633 (-47.40)   [gga-miR-1633:20-42]

u  gu   g    g -  u UG      ---U      CU  G     g 
 gg  uug agcu a gc c  CGCUUC    GCUCAG  CG UGUcu a
 ||  ||| |||| | || |  ||||||    ||||||  || |||||  
 cc  aac ucgg u cg g  gcgaag    cgaguc  gu acgga g
a  uc   g    g a  - gu      ucgu      cg  a     g 

>gga-mir-1634 (-37.60)   [gga-miR-1634:58-79]

    ugag       -   a     cu      u   ugagaguuuuga    gu 
cucc    aaguuuc cac uggag  aggccg ugc            gucg  u
||||    ||||||| ||| |||||  |||||| |||            ||||  a
gagg    uucaagg gug aCUUC  UCCGGC ACG            CAGC  c
    ----       u   c     UU      U   ------------    GU 

>gga-mir-1635 (-51.32)   [gga-miR-1635:23-47]

  accugcc     a  -   a  G          GCU     CU     cac    
gg       gugag ac ccc gU CCCAGGCUGU   GUGCU  GGGgg   gcu 
||       ||||| || ||| || ||||||||||   |||||  |||||   || c
cc       cgcuc ug ggg cg ggguccgaca   cacgg  ccccu   cga 
  -guucuc     c  a   a  a          ---     -u     ucu    

>gga-mir-1636 (-47.50)   [gga-miR-1636:52-71]

       -- -    u  u         - u    a    --   g 
caggcau  c cauc gc gccccguca c ccug uacc  gcu u
|||||||  | |||| || ||||||||| | |||| ||||  ||| g
guccgua  g gugg cG CGGGGCGGU G GGAC GUgg  ugg c
       cc u    c  U         A U    -    aa   u 

>gga-mir-1637 (-29.10)   [gga-miR-1637:6-26]

     U  U    --G       A    aaua 
ccauc GA AGCU   CUGUGGC CGGA    u
||||| || ||||   ||||||| ||||    c
ggugg cu ucga   gacaccg gucu    a
     u  c    agg       c    acca 

>gga-mir-1638 (-19.80)   [gga-miR-1638:20-39]

u     uacu         GUA        U UUU     cu  ua 
 uuuag    ucuuuugug   GUUUGUGU G   GUUUa  au  u
 |||||    |||||||||   |||||||| |   |||||  ||  c
 agguc    aggaaacau   uagacaca c   caaau  ua  u
a     ---u         ---        - -uu     uu  uu 

>gga-mir-1815 (-21.30)   [gga-miR-1815:17-37]

u  cu   --  c      A      AU         U 
 ug  aac  cu cuuuuU GGUUUU  GGUUUUGUU U
 ||  |||  || |||||| ||||||  ||||||||| u
 ac  uug  ga gagaga ccaaaa  ccaaaacaa a
a  cu   uu  c      c      ac         a 

>gga-mir-1814 (-18.50)   [gga-miR-1814:12-31]

      ---  g ---g     G               a 
ugguga   au u    AGGUU UUUGGUUUUGUUUUu g
||||||   || |    ||||| |||||||||||||||  
aucauu   ua a    uucag ggaucgagacgagaa u
      aag  g aaaa     a               u 

>gga-mir-1639 (-18.19)   [gga-miR-1639:45-65]

---cugcu   a    --   ga        gaauuuu 
        gcc uagc  acu  gcacaggg       a
        ||| ||||  |||  ||||||||        
        UGG GUUG  UGG  CGUGUUcc       a
ggcuuuaU   -    CA   AA        gccgguu 

>gga-mir-1640 (-70.30)   [gga-miR-1640:53-76]

    c        c    c             g  u   c     u 
gcug gggcuggg aggg ccguggggcccug ca gug cgagc c
|||| |||||||| |||| ||||||||||||| || ||| ||||| a
cggu cccgaccu uccC GGCGCCCCGGGAC GU CAC GUUcg g
    -        -    C             -  -   U     g 

>gga-mir-1641 (-46.10)   [gga-miR-1641:17-38]

------ au      c        A             U      ucau 
      g  gcaggg auuuccUG GGAUUAAUGACUG CUGGGg    c
      |  |||||| |||||||| ||||||||||||| ||||||    a
      c  ugucuc uaaaggac ccuaauuauugau gacccu    u
cuaguu cg      a        c             u      ccuc 

>gga-mir-1642 (-35.56)   [gga-miR-1642:8-30]

u    -  U    G    U       UG   gugaag 
 gcag gc GAGA GCUG CAGUUUG  GGG      u
 |||| || |||| |||| |||||||  |||      a
 cguc cg uucu cgac gucagac  cuc      g
a    a  -    a    -       gu   aggguu 

>gga-mir-1643 (-33.50)   [gga-miR-1643*:21-42] [gga-miR-1643:58-80]

ucuuggaa     u  uga     A    G  G         u     g 
        guaua gc   uUCUU UCAC AG AGCACUUUU ugaaa c
        ||||| ||   ||||| |||| || ||||||||| |||||  
        uaugu cg   AAGAA GGUG UC UCGUGAAAA auuuu a
----ggag     c  ucg     -    G  G         U     c 

>gga-mir-1644 (-42.30)   [gga-miR-1644:54-74]

   uc   a  u     ug     a   -     u  ugu   a 
gug  ccc gg agcgc  agccc gca ggcag gc   gcc a
|||  ||| || |||||  ||||| ||| ||||| ||   ||| u
cgu  ggg cc UCGUG  UCGGG CGU UUGUC cg   cgg c
   gu   a  c     --     A   G     U  --u   u 

>gga-mir-1645 (-28.00)   [gga-miR-1645:45-64]

         c    ucacucagu      -    ua 
ucugacagu cuuc         agcaga ggcu  u
||||||||| ||||         |||||| ||||   
AGACUGUCA GAAG         UCGUCU cugg  u
         U    ---------      a    uc 

>gga-mir-1646 (-38.20)   [gga-miR-1646:21-43]

gaucau        auc   U -U       ---    C  A     ccu 
      guugcuug   ccc C  GCCCUGC   AGCA UG GAUCU   u
      ||||||||   ||| |  |||||||   |||| || |||||    
      cgacggau   ggg g  cgggacg   ucgu ac cuaga   g
cuacac        ---   u uu       cga    -  c     cac 

>gga-mir-1647 (-51.00)   [gga-miR-1647:28-48]

  aca    --g   -      c  u    U  C      A      -    gag 
cc   uagu   gcu cucgga cc cuuu CU UGCCUG GGGGUA CUCU   g
||   ||||   ||| |||||| || |||| || |||||| |||||| ||||    
gg   aucg   cga gagucu gg ggaa gg acggau ccccgu gaga   u
  -ag    aca   c      u  u    c  u      g      u    aca 

>gga-mir-1648 (-60.50)   [gga-miR-1648:8-28] [gga-miR-1648*:55-75]

u   --      CU      G         a     ---g    a 
 ggc  cggCGG  CGGCUC GCUCCGCUC cacca    gagc g
 |||  ||||||  |||||| ||||||||| |||||    ||||  
 ccg  gccgcC  GUCGAG CGAGGUGAG GUggu    cucg c
g   au      -U      G         G     gcgg    g 

>gga-mir-1649 (-44.10)   [gga-miR-1649:23-42] [gga-miR-1649*:58-77]

   cu   --     uc     ccU        AG UG  --     gcgc 
gug  guu  ggcuc  cuccu   CCUGCAGA  G  CG  GCUGu    u
|||  |||  |||||  |||||   ||||||||  |  ||  |||||     
cac  cag  ccgag  gagga   GGACGUCU  C  GC  Cggca    c
   -c   uc     -u     cAC        CA GU  CU     accc 

>gga-mir-1650 (-38.00)   [gga-miR-1650:54-77]

----- ga  cu   c   u   -       ag  -   -    -c   ca 
     g  ag  cug cag ggc aagcuga  gc cag ggag  agc  c
     |  ||  ||| ||| ||| |||||||  || ||| ||||  |||  a
     c  uc  gac gUC CCG UUCGACU  CG GUC CCUc  ucg  g
ccugu uc  -u   c   U   C       --  A   U    aa   ac 

>gga-mir-1651 (-37.90)   [gga-miR-1651:15-36] [gga-miR-1651*:51-72]

       gg   a   UA  A UG            aaauu 
uccaggg  ugg aGC  AG C  AUAAAAGCAAGC     a
|||||||  ||| |||  || |  ||||||||||||      
agguccu  gcc UCG  UC G  UGUUUUCGUUug     u
       gg   G   UC  C GU            acauu 

>gga-mir-1652 (-52.50)   [gga-miR-1652:56-77]

     a   ccgu   -ga    c     --c           c  c  u 
gggga ggc    ggg   ugcu cuacc   ggggcgcgggg ug ug c
||||| |||    |||   |||| |||||   ||||||||||| || ||  
ccccu ccg    cuc   acgA GGUGG   CCCUGUGUCCC ac ac c
     a   ---u   agg    C     CUC           U  c  c 

>gga-mir-1653 (-44.40)   [gga-miR-1653:64-85]

u     cc   - ugu   -           cc     u g     g  ucu  u 
 cagga  gcu c   ucc cauuuguaugc  agcac g uccug ug   gc a
 |||||  ||| |   ||| |||||||||||  ||||| | ||||| ||   ||  
 guucu  cga g   agg guGGACGUACG  UCGUG C AGGAC ac   ug u
g     -a   c --u   u           --     U G     -  cuu  g 

>gga-mir-1654-1 (-29.20)   [gga-miR-1654:25-45]

   g  ag    -a      gag   U        A  -  GC       
gau uc  uaga  aaaauu   gcU GCUGGUGG GG GA  UGAGca 
||| ||  ||||  ||||||   ||| |||||||| || ||  ||||| u
cua gg  auuu  uuuuga   uga cgaccauu uc cu  acucgg 
   g  -a    ag      aga   -        a  a  -a       

>gga-mir-1654-2 (-29.20)   [gga-miR-1654:25-45]

   g  ag    -a      gag   U        A  -  GC       
gau uc  uaga  aaaauu   gcU GCUGGUGG GG GA  UGAGca 
||| ||  ||||  ||||||   ||| |||||||| || ||  ||||| u
cua gg  auuu  uuuuga   uga cgaccauu uc cu  acucgg 
   g  -a    ag      aga   -        a  a  -a       

>gga-mir-1655 (-55.80)   [gga-miR-1655:25-46]

    aaac        a             GG  U            auu  u 
gggg    guguuuca cacugugUCAGCU  UC UGGGUAAAUGCu   gu c
||||    |||||||| |||||||||||||  || ||||||||||||   ||  
cucc    cacgaggu gugacauagucgg  gg acccauuuauga   cg c
    --ga        c             gu  u            ---  u 

>gga-mir-1656 (-32.30)   [gga-miR-1656:7-28]

uc     CA      GG   U        u     
  ucugU  CCAGCG  CAU GGCAUCAc ggca 
  |||||  ||||||  ||| |||||||| ||| u
  ggacg  ggucgu  gua cuguagug ucgg 
-a     ac      ga   -        -     

>gga-mir-135b (-16.20)   [gga-miR-135b:45-64]

----------------   g a       uugu   g    g 
                ggu a agagggc    ggg aaag g
                ||| | |||||||    ||| ||||  
                UCG U Ucucuug    uuc uuuc a
ucgUUUUCCUUAUUUU   G A       ---u   g    c 

>gga-mir-1657 (-27.80)   [gga-miR-1657:55-77]

---ga a     a     -           c    u     u    uau 
     g aguau ugugu auacaucaaca auac uauau ugua   g
     | ||||| ||||| ||||||||||| |||| ||||| ||||    
     c uuaua gcaua UGUGUGGUUGU UAUG GUAUA acau   g
cuaua c     -     G           -    U     U    uua 

>gga-mir-1658 (-36.70)   [gga-miR-1658:14-36] [gga-miR-1658*:58-80]

    --       aaU      C   CA G       ----C     c 
cccc  cuuccug   AUACCA CCC  G AGUUCUG     cauac a
||||  |||||||   |||||| |||  | |||||||     |||||  
gggg  gaggGGU   UGUGGU GGG  U UCGAGac     gugug g
    uc       AGU      U   -- G       ucuuu     u 

>gga-mir-1659 (-27.90)   [gga-miR-1659:59-81]

    a   ucauau   g   --aa      au       aa      c    c 
cacu guu      cca agg    gacuuc  uuuauuu  uguucu auuu a
|||| |||      ||| |||    ||||||  |||||||  |||||| ||||  
guga cag      ggu ucc    CUGAGG  AAGUAAG  ACGGGA Uaag c
    -   -ugagu   g   gUCC      --       --      -    u 

>gga-mir-1660 (-15.30)   [gga-miR-1660:29-50]

      aa             ua ac 
caagua  cauaaaggcauag  u  a
||||||  |||||||||||||  |   
guuuAU  GUGUUUUUGUGUC  G  a
      AC             CG AU 

>gga-mir-1661 (-21.20)   [gga-miR-1661:3-26]

        AUG        U  GCCU   ca 
acUAGCAG   UUUAGGAA GU    ucu  a
||||||||   |||||||| ||    |||  a
uggucguc   aaguccuu ca    aga  a
        -aa        -  --au   ac 

>gga-mir-1662 (-35.40)   [gga-miR-1662:10-31]

   a              U AUA        guaug 
ucu uggguUUGACAUCA C   CUUGGGAU     a
||| |||||||||||||| |   ||||||||      
aga acccggacuguagu g   gaacccug     c
   -              c gac        aaaca 

>gga-mir-1663 (-55.50)   [gga-miR-1663*:21-40] [gga-miR-1663:57-77]

------uu  g a      ug         A    C         -Ug   - a 
        ca g gggcag  uugggUACC CUGU CUGGGUGCC   gca g g
        || | ||||||  ||||||||| |||| |||||||||   ||| |  
        gu c cucguu  aaccCAUGG GACA GACCUACGG   cgu c c
aggucauc  g a      gg         C    A         Uca   g u 

>gga-mir-1664 (-69.20)   [gga-miR-1664*:9-28] [gga-miR-1664:47-67]

     a       ----CA                         c   a 
ggaga acCCAGA      GGGAGAGAACAGGaggugaaugagg cac g
||||| |||||||      ||||||||||||||||||||||||| ||| U
ccuuu ugggucu      cccucucuuguCCUCCAUUUACUCC GUG C
     c       uacuua                         A   U 

>gga-mir-1665 (-37.80)   [gga-miR-1665:10-31]

     ---            A GA     G    ag gau 
gauac   gaggUAAGGCCC G  GCGCU CAGC  g   g
|||||   |||||||||||| |  ||||| ||||  |    
uugug   uuucguuccggg c  uguga gucg  c   c
     aac            a uc     g    -a agu 

>gga-mir-1666 (-37.46)   [gga-miR-1666:21-42]

    ggagcaaa     a   AAC      GGG         agcugc 
gcca        gcacg guU   GCCACG   CUGAGGCUG      a
||||        ||||| |||   ||||||   |||||||||      a
cggu        cgugc cga   cggugc   gacuucgac      a
    --------     g   cgu      -ga         acuuuc 

>gga-mir-1667 (-34.30)   [gga-miR-1667:54-75]

gc   g     g aa            ca     u   ga     
  cag agguu u  gagauucugaca  auguu aga  uuga 
  ||| ||||| |  ||||||||||||  ||||| |||  ||| g
  guc uccaa a  CUUUAGGACUGU  UACAA Ucu  gaca 
-c   g     g CC            AG     -   aa     

>gga-mir-1668 (-40.40)   [gga-miR-1668*:17-38] [gga-miR-1668:54-74]

--gagg  -u   c  c       C    AG     G   Ug  g   
      gc  gcc ug agGUGGG UGGG  CACAG CAC  ug gc 
      ||  ||| || ||||||| ||||  ||||| |||  || | u
      cg  cgg ac UCCACUC ACUC  GUGUC GUg  gu cu 
cuaaga  uu   u  U       -    CU     -   gu  g   

>gga-mir-1669 (-64.10)   [gga-miR-1669:56-75]

     - g          c  -       c    aa    acg   u 
gcccc c cugccggcug gc ugcucug gccc  acgg   ucg g
||||| | |||||||||| || ||||||| ||||  ||||   |||  
cgggg g ggcggucgAC CG ACGAGAC CGGG  UGcc   ggc c
     a g          A  G       U    --    -aa   c 

>gga-mir-1670 (-44.10)   [gga-miR-1670:4-25]

u                 ACA    u  gc 
 ggGUGGGACGUAGCCUC   GUGG gu  u
 |||||||||||||||||   |||| ||   
 ccuacccugcgucggag   cacc cg  u
a                 -ga    -  uc 

>gga-mir-1671 (-30.20)   [gga-miR-1671:2-24]

  UG      GU  AG      -AAg      
gG  AGGACU  UG  UGGCCA    cagga 
||  ||||||  ||  ||||||    |||| u
uc  uccuga  ac  accggu    guccu 
  gu      --  cu      ccga      

>gga-mir-1672 (-38.30)   [gga-miR-1672:10-33]

 ug       U    C   GAA        A  a  auu 
g  gggaggG CAGG CAG   GGGAUGUG GG uc   c
|  ||||||| |||| |||   |||||||| || ||   u
c  cucucuc gucc guc   uccuacgc cc ag   g
 gu       -    a   --g        -  -  aag 

>gga-mir-1673 (-30.00)   [gga-miR-1673:58-79]

gagcgugaugugcug   a cu   -g   u     -    u    --      
               ggg u  cau  cug gcuuc acuc cacu  gcggg 
               ||| |  |||  ||| ||||| |||| ||||  |||| g
               ccc a  gUG  GAC UGAAG UGAG GUGG  ugucc 
--uuugagauuaguu   g ag   GA   -     G    U    ag      

>gga-mir-1674 (-30.40)   [gga-miR-1674:19-43]

ggua  ag  uu     -  G    UGA       UUU   G    aag 
    ag  ca  ccugc aG GCUA   UGCUGGA   UCU AGca   g
    ||  ||  ||||| || ||||   |||||||   ||| ||||   g
    uc  gu  ggacg uc uggu   guggcuu   agg uugu   a
----  gg  uc     g  g    ugg       ugu   g    cgu 

>gga-mir-1675 (-52.70)   [gga-miR-1675:53-76]

  -   -c   -    --   cc   -     --     gc      a    g 
gc cuu  ccg cuug  gcc  gcu cccgc  ucagg  gguguc ggcg c
|| |||  ||| ||||  |||  ||| |||||  |||||  |||||| ||||  
cg gag  ggc ggac  cgg  cGA GGGUG  AGUUC  CCGCAG ccgc g
  a   ac   u    uu   cu   C     UC     UA      G    c 

>gga-mir-1676 (-39.80)   [gga-miR-1676*:22-43] [gga-miR-1676:59-80]

  aa    u aac        -CCUGA       C        C  uc  g 
cg  ggaa g   ucucuggg      CUCAUCC CUUUGCUC uc  ug c
||  |||| |   ||||||||      ||||||| |||||||| ||  ||  
gc  ccuu c   agaggccc      GGGUGGG GAAGCGAG Ag  ac a
  ac    - -gu        cUGUAA       U        -  cc  g 

>gga-mir-1677 (-40.40)   [gga-miR-1677*:10-30] [gga-miR-1677:45-66]

   g  u        A  -              aag 
agg uc gaUCCUGC CC GCUGAAGUCAAUgg   u
||| || |||||||| || ||||||||||||||    
ucc ag UUAGGACG GG UGACUUCAGUuacu   u
   a  u        A  A              guu 

>gga-mir-1678 (-29.70)   [gga-miR-1678:51-72]

    ----   c     ga  cc   -  g        uugga     
aggg    gug ugagu  cu  cug cu uugucaga     gcca 
||||    ||| |||||  ||  ||| || ||||||||     ||| u
uccc    cac acUCG  GA  GAC GA AACAGUUU     cgga 
    auuu   a     AG  -A   A  -        --uaa     

>gga-mir-1679 (-35.80)   [gga-miR-1679:17-39]

u    ca ug    a UU      ACA    U      Acu   a 
 ugcu  g  gagc g  GUCAGC   GUGG AUAUGC   gcu u
 ||||  |  |||| |  ||||||   |||| ||||||   |||  
 acga  c  cucg c  uagucg   uacc uguacg   cga g
g    -- cu    a cg      acg    -      -au   a 

>gga-mir-1680 (-46.65)   [gga-miR-1680*:14-35] [gga-miR-1680:57-77]

         u    -U        G   AA U    ugucuuugu 
gcugggcac gcuU  CCUCCUGG UAC  C CUGC         a
||||||||| ||||  |||||||| |||  | ||||          
cgacccgug cgAG  GGAGGACU AUG  G GACg         c
         u    UC        -   GC -    uucaucuuu 

>gga-mir-1681 (-21.20)   [gga-miR-1681:53-74]

-uuga      uagu  uu       -aau      u    aga   a  u 
     uguauu    ua  aauugcu    uuagug gaca   aug ga a
     ||||||    ||  |||||||    |||||| ||||   ||| || c
     acguag    gu  uuaauga    AGUCGU CUGU   UAC CU u
gauug      --uu  uu       agGU      U    -AG   A  U 

>gga-mir-1682 (-26.00)   [gga-miR-1682:48-68]

   aaa  --aa   -  ugacu          ------   a 
ggg   ac    agc cc     uuuggcccac      ccu c
|||   ||    ||| ||     ||||||||||      |||  
ccc   uG    UCG GG     AGACUGGGUg      gga c
   --g  GGAG   A  ----U          cccguc   g 

>gga-mir-1683 (-34.10)   [gga-miR-1683:59-81]

    u  ca   -ucc  ug c        --uu     a  u    g   g 
gcug gc  ggc    ac  g aagaugcu    uuguc cc ggau uga a
|||| ||  |||    ||  | ||||||||    ||||| || |||| ||| u
cgac ug  ucg    ug  c UUCUACGA    GACAG GG CUug acu g
    -  ug   uauu  gu U        CACU     -  U    -   g 

>gga-mir-1684 (-47.70)   [gga-miR-1684*:21-42] [gga-miR-1684:60-81]

    u     ---u  a            GC          A  Cu   cu 
ugga cgggu    ug aaggagAGCUCU  UUCCUCAUAC UA  cau  u
|||| |||||    || ||||||||||||  |||||||||| ||  |||  u
auuu gucca    ac uuccUCUCGAGG  AAGGAGUAUG Au  gua  u
    u     ccuu  c            UA          A  ag   uc 

>gga-mir-1685 (-36.10)   [gga-miR-1685*:19-40] [gga-miR-1685:60-81]

guu    a        guUG    -  C     G       uuug  ua 
   uuuu guggcaca    GAGU CA UACCA UGCUGUG    ac  c
   |||| ||||||||    |||| || ||||| |||||||    ||  g
   aaag caucgugu    CUCA GU AUGGU AUGACAc    ug  u
--u    a        -AGA    A  -     A       -caa  ua 

>gga-mir-1686 (-43.80)   [gga-miR-1686:59-80]

     --uga    a   c     c    - -    a       guug    u 
agcuc     gacu ucc ugggg ugac c uggc cuccagg    uagc g
|||||     |||| ||| ||||| |||| | |||| |||||||    ||||  
uuggg     cugg agg ACCCC ACUG G GUCG GAGGUcc    auug u
     uagga    -   u     U    C U    -       ----    u 

>gga-mir-1687 (-37.40)   [gga-miR-1687:22-42] [gga-miR-1687*:55-75]

     cu     u   ug   --       AUG       U   uuag 
gauuu  uugug cug  guc  UGAGGAA   AGCCAGC GAG    c
|||||  ||||| |||  |||  |||||||   ||||||| |||     
cuaaa  aauac gac  cAG  ACUCUUU   UCGGUCG Uuc    a
     --     -   gu   UG       --G       U   uuca 

>gga-mir-1688 (-24.10)   [gga-miR-1688:44-66]

agg      --  --g a    --a     --a    c 
   acuguc  ug   c gcca   ucacc   gggc a
   ||||||  ||   | ||||   |||||   |||| c
   ugGUAG  AC   G UGGU   AGUgg   cccg c
uca      UA  AGA A    ACG     gua    u 

>gga-mir-1689 (-36.60)   [gga-miR-1689*:23-44] [gga-miR-1689:61-83]

  u uuaugu   gg      a  ---U      A    GU      -g a  a 
gg g      cug  cagaag UC    CUGCUU CAGU  CUGGGG  g uc u
|| |      |||  |||||| ||    |||||| ||||  ||||||  | ||  
cc c      gac  gucuuc AG    GACGAA GUCA  GGCCcc  c gg g
  u ugucuu   gg      -  UUGC      G    GU      ga -  c 

>gga-mir-1690 (-51.40)   [gga-miR-1690*:24-46]

       ucca           -   -      CA   G   A      cuaaa 
gauggcu    gcagggugcgu aUC CAGAGG  AAG AGC CUGCUg     u
|||||||    ||||||||||| ||| ||||||  ||| ||| ||||||      
uuacuga    cgucucacgua uag gucucu  uuc ucg gacggc     g
       --ug           g   u      --   g   a      acagg 

>gga-mir-1691 (-42.20)   [gga-miR-1691:52-74]

u    u  ---c   u   --    u   ug ag    ca     uuu 
 cagc gc    ggg ggc  ugug gcc  g  cagc  gagcu   g
 |||| ||    ||| |||  |||| |||  |  ||||  |||||    
 gucg cg    ccc ccG  ACGU CGG  C  GUCG  CUcga   a
g    -  aaga   c   UG    C   GU CA    -A     uga 

>gga-mir-199b (-22.40)   [gga-miR-199b:39-58]

u    a     --u     --        cuucu 
 uuuu ggacu   ugugu  acuacuga     c
 |||| |||||   |||||  ||||||||      
 agaa ccUGG   ACACG  UGAUGACu     u
g    c     UUU     UC        aucuc 

>gga-mir-1692 (-18.00)   [gga-miR-1692:19-38]

   uuccuu    gaagu   -AGC   -G          ugg  g 
ucu      uagu     UGU    UCA  UUGGUAGAGU   ug c
|||      ||||     |||    |||  ||||||||||   ||  
aga      auca     aca    agu  aacuauuucg   gc a
   --uuuu    aauuu   gauu   aa          -ug  a 

>gga-mir-1693 (-31.80)   [gga-miR-1693:28-48]

cauaugaaa      aau     cug   AAAGGA   A      A   -   g 
         cucucu   ggugu   gGC      UGA GCUGUG UGu uug c
         ||||||   |||||   |||      ||| |||||| ||| |||  
         gagggg   ucaca   ccg      acu ugacac aca gac a
-guucacaa      -cu     ---   --acgg   g      c   a   c 

>gga-mir-1694 (-47.50)   [gga-miR-1694:58-79]

   cu  - -ug     c   -  a gg    u  -       aca    gac 
agc  gc c   ccucc agc cc c  cgca cc cguccuu   ccgc   c
|||  || |   ||||| ||| || |  |||| || |||||||   ||||    
ucg  cg g   ggagg ucg GG G  GCGU GG GCAGGAG   Ggcg   a
   -c  u caa     -   A  C -A    C  A       ---    agc 

>gga-mir-1695 (-35.20)   [gga-miR-1695:11-32]

u     -   aGA      UU       -  A  -c  ac 
 gcggc caa   GCACAG  UGGUCAU GG GC  uc  c
 ||||| |||   ||||||  ||||||| || ||  ||  u
 cgucg guu   cguguc  gccggua cc cg  ag  c
a     u   cac      cu       a  -  ua  gu 

>gga-mir-1696 (-25.10)   [gga-miR-1696:2-25]

   G     AU   AG   A   UCu      aug 
gCU CUGUG  GUG  CUG GCA   gcaagc   g
||| |||||  |||  ||| |||   ||||||    
cga gacac  cau  ggc ugu   cguucg   c
   a     cc   -a   g   -uc      acc 

>gga-mir-1697 (-35.30)   [gga-miR-1697:46-67]

    ga  -     --       gaa      c     uc 
gaca  gg ggagu  caugcag   cauggg agcag  a
||||  || |||||  |||||||   |||||| |||||  c
cugu  cc cuuCG  GUGUGUC   GUACUC UCguc  u
    ac  u     AC       AGG      -     cc 

>gga-mir-1698 (-71.50)   [gga-miR-1698:61-82]

  g     c u   -    c       u        -   c u   cuc     a 
gc cggca c gcu ccgg cgccggc gcagggau gcu c gcc   cgccg g
|| ||||| | ||| |||| ||||||| |||||||| ||| | |||   ||||| c
cg gccgu g cga ggcc gcggccG CGUCCCUA CGG G CGG   GCggu a
  -     c c   c    c       -        A   C U   --A     c 

>gga-mir-1699 (-47.90)   [gga-miR-1699:59-80]

gccuggaa   c  c     -c     u g    cu     c  ccuc  g 
        gcc ug gcacc  gcccu g caug  ccucu gg    ug a
        ||| || |||||  ||||| | ||||  ||||| ||    ||  
        cgg ac cgugg  CGGGA C GUAC  GGAGA Cc    ac a
---cgaua   a  u     AA     - G    AG     C  --cu  a 

>gga-mir-1700 (-32.70)   [gga-miR-1700:60-80]

   aaga    gag    ac   a   uu g    g   a       u  g 
ugg    gcug   gcac  guu ucc  u cuau ccu ugauggg gu a
|||    ||||   ||||  ||| |||  | |||| ||| ||||||| ||  
auc    ugac   ugug  cga AGG  A GAUA GGA ACUACcu ca u
   aaag    ---    gu   C   -U G    G   G       c  u 

>gga-mir-1701 (-17.20)   [gga-miR-1701:13-32]

uauaau   cgu  CU -    -   GG    UUuu   u 
      agc   GG  G GUUA GUU  UUGU    ucc c
      |||   ||  | |||| |||  ||||    |||  
      ucg   cc  c cgau cgg  gacg    agg u
auaguc   uuu  uu u    a   uu    ---u   g 

>gga-mir-1702 (-39.50)   [gga-miR-1702:52-72]

  u    ga  -c             ugu     ucug   gcu 
ac ccag  gc  acaguuugcucug   gugca    ggu   g
|| ||||  ||  |||||||||||||   |||||    |||    
ug gguc  cg  UGUCGAGCGAGAC   UACGU    ccg   a
  u    -a  uu             --U     --UA   aac 

>gga-mir-1703 (-37.80)   [gga-miR-1703:18-40]

    u     a    u A AG    U     C  U     aauua 
agcu gccgc ggau c G  GCUG AGGUC CG GCUUU     a
|||| ||||| |||| | |  |||| ||||| || |||||      
ucga cggug ccua g c  cgac uucag gc cgaag     a
    -     -    c a cu    -     u  u     caaga 

>gga-mir-1704 (-27.70)   [gga-miR-1704:13-33]

   -c   a    A      AUU  UG       cca 
gac  gag auuc CAGCAG   GA  GGGCACA   a
|||  ||| |||| ||||||   ||  |||||||    
cug  cuc uagg gucguc   cu  uccgugu   g
   cc   g    -      ---  ug       cua 

>gga-mir-1705 (-29.40)   [gga-miR-1705:56-77]

  u  gag   uc    a u             au    c     cc 
gc ga   cuu  cuca c gugugcugauuuc  uaga uuuuu  u
|| ||   |||  |||| | |||||||||||||  |||| |||||   
cg cu   gaa  gagU G UACACGACUGAAG  GUCU Aagaa  g
  u  -aa   --    C -             --    A     ca 

>gga-mir-1706 (-35.40)   [gga-miR-1706:48-69]

      uc          u     -    uuuu   g 
gcuugg  gccucaucuc cuucu cacu    auu u
||||||  |||||||||| ||||| ||||    |||  
cgagcC  UGGAGUAGGG GGAGG GUgg    ugg g
      CU          U     U    -cuu   a 

>gga-mir-1707 (-33.00)   [gga-miR-1707:59-81]

   cu   ucugcg     a    -    g      g   u   ugagu 
aug  ccc      augcg gaug caga cucgcu aaa gcu     u
|||  |||      ||||| |||| |||| |||||| ||| |||      
uac  ggg      uacGU CUAU GUCU GGGCGA UUU cgg     u
   uc   --uuua     G    U    A      G   -   uaaug 

>gga-mir-1813-2 (-20.10)   [gga-miR-1813:11-30]

---- c      -   U    ---GG       GAGA  ug 
    g auaaga acU CUGU     CUGCAAG    Gc  c
    | |||||| ||| ||||     |||||||    ||  c
    c uauuuu uga gacg     gacguuc    cg  a
cguu u      a   c    auaaa       ---g  ua 

>gga-mir-1708 (-35.50)   [gga-miR-1708:19-39]

   --ac     gc ug     -     U G   G       g   gc 
cug    cuaau  u  ggaUG GGGUG G AAU AAUCCUU uuu  u
|||    |||||  |  ||||| ||||| | ||| ||||||| |||   
gac    gauua  a  cuuac cccac u uua uuaggaa gag  u
   gaaa     -a gu     u     u g   g       g   uc 

>gga-mir-449c (-38.70)   [gga-miR-449c:7-30] [gga-miR-449c*:47-68]

 ug      C     G   U   U        --u    
g  gucUGG AGUGC UGU AGC GGCUGUug   ccc 
|  |||||| ||||| ||| ||| ||||||||   || a
c  cAGACC UCACG GCA UCG UCGACaac   gga 
 gu      -     -   C   -        cau    

>gga-mir-1709 (-23.50)   [gga-miR-1709:7-28]

cuaggcUGGAA   U   --U   -C          -    g gc 
           UGA GAG   GCA  UGACUggcca ucug u  u
           ||| |||   |||  |||||||||| |||| |   
           acu cuc   ugu  guugacuggu ggac g  c
-----gguaaa   -   uau   cu          u    g ua 

>gga-mir-1710 (-31.40)   [gga-miR-1710:15-36]

    -a     a     A      -   UAA    C  gu 
aacc  gcugc auuUC UCUGCU GCA   CCAU CA  a
||||  ||||| ||||| |||||| |||   |||| ||  a
uugg  ugacg uaagg agacgg cgu   ggua gu  u
    ag     g     -      u   cuc    c  au 

>gga-mir-1711 (-17.80)   [gga-miR-1711:5-24]

   u UG    ------   G  -     U   aga 
cac G  CAGU      GCU CA UCUCU Caa   c
||| |  ||||      ||| || ||||| |||   a
gug u  gucg      ugg gu agagg guu   u
   u gu    auuguu   g  c     u   auu 

>gga-mir-1712 (-24.40)   [gga-miR-1712*:9-30] [gga-miR-1712:47-68]

  c    uG      G CU     AC   -C    c 
gc cuuc  GCUCCA U  UAACU  AGG  aaug u
|| ||||  |||||| |  |||||  |||  ||||  
cg gaGG  UGAGGU A  AUUGA  Ucc  uuac g
  u    UU      G CU     CU   uc    a 

>gga-mir-1713 (-44.10)   [gga-miR-1713:57-79]

    aaa  ac        -  c  c    --g   g   aa    ugug 
cuug   au  cccucccg gc cc cguu   ccc cuc  aguc    a
||||   ||  |||||||| || || ||||   ||| |||  ||||    c
gaac   ua  gggagggc cG GG GCAA   GGG GAG  UCgg    a
    -cg  ga        u  U  C    GAA   A   GC    uuga 

>gga-mir-1714 (-27.60)   [gga-miR-1714:10-32]

u   g   gCC        CU    -       cua  gc 
 gcu cuu   UAGUAGGG  GCUG AGGUGAU   gg  a
 ||| |||   ||||||||  |||| |||||||   ||   
 cga gaa   gucauccu  uggu uccacug   uc  u
a   a   --a        cc    a       ---  ac 

>gga-mir-1715 (-42.00)   [gga-miR-1715:20-43] [gga-miR-1715*:66-86]

  -cua    -aa     c     -   A    AA         ---  -a     
gg    agag   ggaag agAGG AUC GUAG  GUCAGCUGU   GC  ggca 
||    ||||   ||||| ||||| ||| ||||  |||||||||   ||  ||| g
cc    ucuc   ccuUU UCUCC UGG CGUC  CAGUcgacg   cg  ucgu 
  aaug    gua     -     A   G    -A         uag  ag     

>gga-mir-1716 (-57.00)   [gga-miR-1716:22-45]

     -------a     ugu  -     AG         U UG     A    - a 
gcugc        uuucc   gc cgcag  CGGGGCGGC G  AGCUG GCUg c c
|||||        |||||   || |||||  ||||||||| |  ||||| |||| | g
cggcg        aaagg   cg gcguc  gucccgccg c  ucggc cggc g g
     ccaacucc     --u  a     -g         u cu     c    a u 

>gga-mir-1717 (-39.20)   [gga-miR-1717:21-43]

   gaga       c  u         AACCU     A      -    cu 
gcu    gcaggcc gg uaACUCUCU     GACAG AAACUa ucua  u
|||    ||||||| || |||||||||     ||||| |||||| ||||   
uga    uguucgg uc auugaggga     cuguc uuugau ggau  u
   --aa       u  c         cucgu     c      u    cu 

>gga-mir-1718 (-25.60)   [gga-miR-1718:50-70]

u   ac       ca          cc   a  c    cag 
 gua  uuuuggc  uguuccuuug  ccu ag uuuu   a
 |||  |||||||  ||||||||||  ||| || ||||    
 cau  aaaacuG  GCAAGGAGAC  GGA UC Aaaa   a
a   --       AG          -A   A  -    auu 

>gga-mir-1719 (-21.40)   [gga-miR-1719:24-44]

u    aa     uguuu     aAA  AU    -A      --    u 
 ugag  guacu     guacc   AG  GAUG  GUUGCU  GAUG g
 ||||  |||||     |||||   ||  ||||  ||||||  |||| c
 auuc  uauga     cgugg   uc  uugu  caaugg  cugu u
a    gc     -----     --g  cu    cg      ag    u 

>gga-mir-1720 (-27.00)   [gga-miR-1720*:4-25] [gga-miR-1720:43-64]

u  U    -     GGA          g ga a 
 uc GAUC ACCUC   CGUUGCUUUg u  c a
 || |||| |||||   |||||||||| |  | c
 AG CUGG UGGAG   GCAACGAAac g  g c
a  U    C     --A          - ag c 

>gga-mir-1721 (-22.40)   [gga-miR-1721:45-65]

   ua     u     ---ug     -g    g  a  c 
ggg  aguau uuagg     guuau  cugu cc cc a
|||  ||||| |||||     |||||  |||| || ||  
ccc  ucguG AGUCU     UAGUA  GAca gg gg g
   ug     U     GGUUG     GA    -  -  g 

>gga-mir-1722 (-32.30)   [gga-miR-1722:16-38] [gga-miR-1722*:54-75]

-- u      --  c     GUCA    --AA  C         -   cu 
  g cagcua  au cuccU    CCCU    GA UGCUCUAAU gug  g
  | ||||||  || |||||    ||||    || ||||||||| |||   
  c gucggu  ua gggGA    GGGA    CU ACGAGAUua cau  u
ca -      cu  c     -ACG    ACCA  -         a   aa 

>gga-mir-1723 (-50.90)   [gga-miR-1723:59-81]

   --   ugag   -   cc u    a   -             g     c uc 
gcu  gca    gcu cag  c gcag gag cugcacauuucgu uccca c  a
|||  |||    ||| |||  | |||| ||| ||||||||||||| ||||| |  u
cgg  cgu    cga guc  g cguc CUC GACGUGUAAGGCG AGGGU g  g
   ac   --ca   a   au u    A   C             -     c uc 

>gga-mir-1724 (-42.80)   [gga-miR-1724:24-46]

u    --- -   u     cc       G       UU     C C   Gucc 
 guuc   g ugc gugca  gcggggU CUGAGCG  GGCUG G UGC    c
 ||||   | ||| |||||  ||||||| |||||||  ||||| | |||     
 caag   c gcg cgcgu  cguccug gacucgc  ucggc c acg    c
a    guc u   c     uc       -       -c     c a   acaa 

>gga-mir-1725 (-19.00)   [gga-miR-1725:46-66]

u   acau       a      --  c    ag gau 
 gca    gcagcuu uaacua  uc uacu  a   a
 |||    ||||||| ||||||  || ||||  |    
 cgU    CGUCGAG AUUGAU  AG AUga  u   a
a   ----       -      AU  U    aa agg 

>gga-mir-1726 (-44.20)   [gga-miR-1726:55-76]

        ----   -    gc gg          uga    ---    gug 
cgcugugg    ugg agcu  u  gccaaaccca   aagc   ucuc   g
||||||||    ||| ||||  |  ||||||||||   ||||   ||||    
gcgguacu    acc ucgg  G  UGGUUUGGGU   UUCG   agag   g
        cucg   g    uU UU          -UG    AAa    aag 

>gga-mir-1727-1 (-36.50)   [gga-miR-1727:24-46]

  a   ---a     au          -     C  UA      UGA     uug 
gg cag    cuuag  cagcaggaaA AGCUG UC  AUGAAC   AGGuu   a
|| |||    |||||  |||||||||| ||||| ||  ||||||   |||||   c
cc guc    gaguc  guuguucuuu ucgac ag  uacuug   uccga   a
  -   aaaa     --          a     a  ua      uga     ccg 

>gga-mir-1727-2 (-36.50)   [gga-miR-1727:24-46]

  a   ---a     au          -     C  UA      UGA     uug 
gg cag    cuuag  cagcaggaaA AGCUG UC  AUGAAC   AGGuu   a
|| |||    |||||  |||||||||| ||||| ||  ||||||   |||||   c
cc guc    gaguc  guuguucuuu ucgac ag  uacuug   uccga   a
  -   aaaa     --          a     a  ua      uga     ccg 

>gga-mir-1728 (-37.30)   [gga-miR-1728-5p:16-38] [gga-miR-1728-3p:62-83]

         u   u          CAU      A   --A    gagg 
gugaauuag uca cUGGUUGAUC   UGGAAG CUG   gcuu    g
||||||||| ||| ||||||||||   |||||| |||   ||||    u
uacuuaguc agu GACCGACUAG   GUCUUC GAc   ugga    g
         c   C          -AU      G   aaa    gaaa 

>gga-mir-1813-1 (-30.40)   [gga-miR-1813:51-70]

u   -  ---a          a     u    a   -ca    uu 
 ucc ca    ggaguuucuc uugca guua cag   agau  g
 ||| ||    |||||||||| ||||| |||| |||   ||||  g
 agg gu    ccuuaGAGAG AACGU CGGU GUC   ucug  u
a   u  agac          G     -    -   UUc    uu 

>gga-mir-1729 (-39.90)   [gga-miR-1729:6-28] [gga-miR-1729*:47-68]

     -    C        A         g   cua 
ccugc AUCC UUACUCAC UGAGUAGUC uau   u
||||| |||| |||||||| ||||||||| |||    
ggaCG UAGG AAUGAGUG GCUCAUCag gug   u
     A    -        -         g   acu 

>gga-mir-1730 (-37.10)   [gga-miR-1730*:21-43] [gga-miR-1730:60-81]

       gu    a    caCA  U     AG    AA     g  aga 
cagagcu  uugc ggca    GC AACAG  GUGG  CCUUG gg   a
|||||||  |||| ||||    || |||||  ||||  ||||| ||   a
gucucga  aaug UCGU    CG UUGUC  UACC  GGAAc uc   a
       --    g    ----  U     GG    --     g  gug 

>gga-mir-1731 (-41.20)   [gga-miR-1731:25-47]

     -ccucu      ag c   u  UU     C   C      GC      
cuugg      gcugga  c ggg AC  GACUG AGG ACUGCU  Ucugu 
|||||      ||||||  | ||| ||  ||||| ||| ||||||  |||| u
gaauc      ugaccu  g ucc ug  cuggu ucc ugacgg  agacc 
     cuuccu      cu u   -  uu     -   u      uu      

>gga-mir-1732 (-54.20)   [gga-miR-1732:58-78]

   a  agcaga         -------c                  -uc    cug 
gcc gg      uguguacac        gcaguccgacagcagcgc   gcgu   c
||| ||      |||||||||        ||||||||||||||||||   ||||    
cgg cc      auacaugug        cGUCGGGCUGUCGUCGUG   Cgcg   c
   -  ------         ucuugucc                  CCA    ugu 

>gga-mir-1733 (-29.10)   [gga-miR-1733:47-67]

-ga  g    g   --    aguac     g  ac    u  u 
   gu ugcu aug  caga     cacag ca  ccag ag g
   || |||| |||  ||||     ||||| ||  |||| || g
   ca acga ugc  gUCU     GUGUC GU  GGUC uc c
cua  a    g   aa    GUUAA     G  -A    -  a 

>gga-mir-1734 (-46.10)   [gga-miR-1734:13-33]

                   C            Uauuu   c 
ucagaugcugaaAUAUGCC CAAUGUAUAAGC     gua u
||||||||||||||||||| ||||||||||||     |||  
agucuacgacuuuauacgg guuauguauucg     cgu u
                   a            ugacu   c 

>gga-mir-1735 (-36.80)   [gga-miR-1735:16-36]

  c      gcuua  G G      G          - ug   
cu cugcag     cA G GCUUUG GCAGCAUCUG u  uu 
|| ||||||     || | |||||| |||||||||| |  | a
ga gacguc     gu c cgaaac ugucguagac g  ag 
  u      -----  g a      g          u gu   

>gga-mir-1736 (-48.30)   [gga-miR-1736*:18-39] [gga-miR-1736:63-84]

   ga  c ug            A    U  U         ----   c a 
gau  ca a  agguugAGGGCA UUCC GA AGGUGCUga    gca c u
|||  || |  |||||||||||| |||| || |||||||||    ||| | c
cua  gu u  uccaACUCCUGU AAGG CU UCCACGAcu    cgu g u
   ga  c gu            C    -  -         gaaa   c a 

>gga-mir-1737 (-50.40)   [gga-miR-1737:14-33]

   g        -       --U  U C      U u -cca    cc 
ccu cugcugcu gCAGCAC   GC G GCUCGG G c    cugc  c
||| |||||||| |||||||   || | |||||| | |    ||||   
gga gacgacga ugucgug   cg c cgggcc c g    gacg  u
   g        g       ucu  c u      - u ccac    ac 

>gga-mir-1738 (-45.50)   [gga-miR-1738:13-34]

      --u       --U    G     A   -AUU    --u   g 
cacugc   gguggAC   GACU CUCAG GGG    GGgc   gcu c
||||||   |||||||   |||| ||||| |||    ||||   |||  
gugacg   uuaccug   cuga ggguc ccc    cccg   ugg a
      ucg       ugu    a     a   gugu    ucc   u 

>gga-mir-1739 (-44.40)   [gga-miR-1739:58-80]

    guuaugcc  u  u        -     -  a  c  cu    cu  c 
guga        ag gc gccccagc uggcu cc ug cc  uggg  gg a
||||        || || |||||||| ||||| || || ||  ||||  ||  
cacu        uc cg cggGGUCG ACCGA GG AC GG  ACcc  uc a
    --------  u  u        G     U  -  A  AC    --  g 

>gga-mir-1740 (-30.39)   [gga-miR-1740:24-46] [gga-miR-1740*:63-82]

u aug   aa  a        aa   A      GA    A    UUaaguu 
 g   ugg  uu cccugagu  UGU GUUUAA  GGAU GGUC       u
 |   |||  || ||||||||  ||| ||||||  |||| ||||        
 c   auc  aa gggacuca  ACA CAAAUU  CCUA CUag       u
a gaa   aa  -        AA   C      AA    -    ugugaca 

>gga-mir-1741 (-30.90)   [gga-miR-1741:49-68]

      -    cc         au        uu  a 
cuucca ggug  ugauccaga  ccauuaag  ua a
|||||| ||||  |||||||||  ||||||||  || a
gaaggU CCAC  AUUAGGUCU  GGUAauuu  au a
      U    --         -C        cu  g 

>gga-mir-1742 (-43.90)   [gga-miR-1742:53-72]

     ccccg   a      gg        c       c uua 
gcgcu     gcg gggugg  ccugagcg ugauugg g   u
|||||     ||| ||||||  |||||||| ||||||| |    
cgugg     cgu ccCGCC  GGGCUUGC GCUAAcc c   u
     -----   c      UA        U       a cuc 

>gga-mir-1743 (-38.40)   [gga-miR-1743:29-50]

    u   cuccacu   u      uc       G     A   U      c 
aaag agg       gug uaaucc  uUGGAAU CAGCA UUA CACCUa c
|||| |||       ||| ||||||  ||||||| ||||| ||| |||||| a
uuuc ucc       cac auuagg  aacuuua gucgu aau guggau u
    c   ----uuu   u      ga       a     g   u      a 

>gga-mir-1744 (-41.10)   [gga-miR-1744*:19-40] [gga-miR-1744:55-76]

--         a c    gc     -       C    A     a 
  ggagucagg c cagu  UGCUC UGUUGAA UCAA AGCAg a
  ||||||||| | ||||  ||||| ||||||| |||| |||||  
  uuuuagucc g GUCA  ACGAG ACAACUU Aguu uuguc c
cc         c A    GA     G       C    g     c 

>gga-mir-1745-1 (-34.80)   [gga-miR-1745:16-37]

     gcc         C     U      A   --CUCa  uu 
agugu   ugcugggUG UCUGC UGGCAA CUG      cu  u
|||||   ||||||||| ||||| |||||| |||      ||   
ucaca   acgaucuau agacg gccguu gac      ga  u
     -ac         u     u      g   ucccca  cc 

>gga-mir-1745-2 (-34.80)   [gga-miR-1745:16-37]

     gcc         C     U      A   --CUCa  uu 
agugu   ugcugggUG UCUGC UGGCAA CUG      cu  u
|||||   ||||||||| ||||| |||||| |||      ||   
ucaca   acgaucuau agacg gccguu gac      ga  u
     -ac         u     u      g   ucccca  cc 

>gga-mir-1746 (-35.20)   [gga-miR-1746:58-79]

    a  ----a  -   c   u    u  u  u   ag    a    ccca 
ggaa ug     gc ugc cca ccgu gg cc cag  cuga cagc    u
|||| ||     || ||| ||| |||| || || |||  |||| ||||     
ccuu ac     ug aug ggU GGUA CC GG GUC  GACU guug    c
    c  gcagg  c   u   -    C  U  U   GA    C    uuac 

>gga-mir-1747 (-32.70)   [gga-miR-1747:12-33]

    g  gc   G        U  AG   U    g uc 
ccag gu  ugU CACUUGAA GG  UUC GGGu u  u
|||| ||  ||| |||||||| ||  ||| |||| |   
gguu ca  aca gugaacuu cc  aag ccua g  c
    g  aa   g        -  cu   u    g ua 

>gga-mir-1748 (-47.40)   [gga-miR-1748:49-70]

    u   c              agg   -  c   ca   a 
gcag gcc ugcucggcugcacc   cag cc cag  guc c
|||| ||| ||||||||||||||   ||| || |||  ||| c
cguc cgg gugAGUCGACGUGG   GUC GG GUC  cgg c
    -   u              ---   U  A   -A   u 

>gga-mir-1749 (-36.70)   [gga-miR-1749:25-45] [gga-miR-1749*:59-79]

   ugca    g    cu  a        A     U  -A U   U   u 
gag    gcug aggg  ac gggAGAUA GGAAC GA  C GGC gca c
|||    |||| ||||  || |||||||| ||||| ||  | ||| |||  
cuc    cgau uccu  ug cCCUUUAU CCUUG CU  G Ucg cgu u
   uaaa    -    -c  -        C     U  CG U   u   c 

>gga-mir-1816 (-29.20)   [gga-miR-1816:25-44]

    -        gau    a cu    G   -UU      UU        ga 
ggau ggugaaau   cuga g  uGUA GUU   GUGGUU  GUUugaca  u
|||| ||||||||   |||| |  |||| |||   ||||||  ||||||||  u
ucua ucauuuug   gacu c  acgu caa   uacuaa  uaaauugu  a
    a        --u    a cu    a   cuc      uu        ac 

>gga-mir-1750 (-41.60)   [gga-miR-1750:14-35]

   -       -u --aU   G    AG  C        aug  u 
gag acuggag  g    GAG ACCA  UG AUCACUGC   cc c
||| |||||||  |    ||| ||||  || ||||||||   ||  
cuc ugaccuc  c    cuc uggu  ac uagugacg   gg c
   a       uc gugu   g    ga  -        --a  a 

>gga-mir-1751 (-44.90)   [gga-miR-1751*:15-37]

    u   -    a   AG       GU    G       --ca g 
cggc aca gcaa gUG  CUGCUCU  UCCU CAUCCca    g a
|||| ||| |||| |||  |||||||  |||| |||||||    |  
gccg ugu cguu cgc  gacggga  agga guagggu    c a
    -   u    g   ca       gc    a       uuga g 

>gga-mir-1752 (-24.32)   [gga-miR-1752:50-70]

  aa  ---aaaga        -a       -- g       u 
ca  gc        ucucuucu  ccaaugg  u cauucuu a
||  ||        ||||||||  |||||||  | |||||||  
gu  cg        AGAGAAGA  GGUUGUC  g guaagaa a
  gc  gguaaaAC        GA       UU g       a 

>gga-mir-1753-1 (-45.40)   [gga-miR-1753:14-35]

       g  u u    AA                 cuc 
gcugggg cu c GUGA  UCCGGGUGAAGGCUGUg   c
||||||| || | ||||  |||||||||||||||||    
cggccuc gg g cacu  agguccauuuucgacgu   a
       -  c c    gg                 cuc 

>gga-mir-1753-2 (-45.40)   [gga-miR-1753:14-35]

       g  u u    AA                 cuc 
gcugggg cu c GUGA  UCCGGGUGAAGGCUGUg   c
||||||| || | ||||  |||||||||||||||||    
cggccuc gg g cacu  agguccauuuucgacgu   a
       -  c c    gg                 cuc 

>gga-mir-1754 (-40.80)   [gga-miR-1754:5-24]

  g         -        CUGG      c  ug 
cu cUCGUGCUG GAGCUGUU    cugggu ac  u
|| ||||||||| ||||||||    |||||| ||   
gg gggcacgac cucgacgg    gaccca ug  g
  g         a        ----      -  uc 

>gga-mir-1755 (-31.10)   [gga-miR-1755:17-36]

  ugu        gg    ------   AA     U    U      ua 
uc   gggacuuu  aUCG      GUG  UGGCU GGCA Gugcug  g
||   ||||||||  ||||      |||  ||||| |||| ||||||  c
ag   uccuggag  uagc      uau  gucga ucgu cacgac  c
  -uu        --    aaaaag   gc     c    -      cu 

>gga-mir-1756a (-46.50)   [gga-miR-1756a:57-78]

         a  u          a     gca    ucc     c 
ugggccaga uc cagcuggugu aguca   gagc   acuga a
||||||||| || |||||||||| |||||   ||||   ||||| u
aucuggucu ag GUCGACCACA UUAGU   CUcg   ugauu u
         a  U          C     GAC    ---     a 

>gga-mir-1757 (-33.70)   [gga-miR-1757:60-80]

  --u      c g    u     -    u  u   g      -guuu   u a 
gc   guuuug c ugga gaaca aaac cu cug uccgcu     agu c a
||   |||||| | |||| ||||| |||| || ||| ||||||     ||| | u
ug   uagaac g accu cuugu uUUG GA GAC AGGCGG     ucg g u
  ucu      c -    u     c    -  U   A      AGACU   c a 

>gga-mir-1758 (-18.00)   [gga-miR-1758:43-65]

    c   cu   cuuugu  -    u a   a   a 
ggcu cgu  ccc      gg gcuu g uga gga a
|||| |||  |||      || |||| | ||| |||  
cuga gUA  GGG      UC CGAA C ACU ccu g
    u   UC   --CUGU  A    C -   -   c 

>gga-mir-1759 (-37.90)   [gga-miR-1759:8-29]

          --  -U    --      -    -   acc 
gcugcugUAG  GG  AGGA  GGAGAG AGGU GUu   u
||||||||||  ||  ||||  |||||| |||| |||    
cgacgacguc  cc  uccu  ccucuc uccg cga   u
          uu  uc    ac      c    u   cua 

>gga-mir-1760 (-36.10)   [gga-miR-1760:52-74]

u   --    g   uu ug   --      ua    c       gca 
 gca  guau cug  a  gua  ucaguc  acag aggugug   u
 |||  |||| |||  |  |||  ||||||  |||| |||||||   a
 cgu  caua gac  u  UAU  AGUCAG  UGUC UCCAUac   a
a   gc    a   uc gu   UU      UC    C       aca 

>gga-mir-1761 (-17.30)   [gga-miR-1761:15-34]

u       uuauu    -G   C   UUUU  UU   aaaaa 
 uguacuu     uCAG  GGU ACU    UG  Uuc     a
 |||||||     ||||  ||| |||    ||  |||      
 acaugag     aguc  cca ugg    ac  aag     a
g       -uugu    aa   u   ---c  uu   aaaaa 

>gga-mir-1762 (-48.20)   [gga-miR-1762:20-43]

  -u  u     a  -   a    AG   G     AG     A    u  u 
gg  gc ccucc gc ugc gGGC  GAG GAAGC  AGCUU GAgc gu u
||  || ||||| || ||| ||||  ||| |||||  ||||| |||| || u
cc  ug ggagg cg gug cccg  cuc uuucg  ucgag cucg ca c
  uu  -     -  u   c    aa   g     -g     -    -  u 

>gga-mir-1763 (-43.30)   [gga-miR-1763:41-63]

   --ga    -g        u   g  -       
gcg    gcgc  cguucccg ccc cc cgcggg 
|||    ||||  |||||||| ||| || ||||| c
cgc    CGCG  GCGAGGGC GGG Gg gugccg 
   AGGG    AG        -   A  c       

>gga-mir-1764 (-46.60)   [gga-miR-1764*:23-43] [gga-miR-1764:61-81]

     c   ---    u       gG     G       A      uga    c 
accug uug   gcgu ccauggu  CUCAG CAGCAGG GGCUUG   gaug u
||||| |||   |||| |||||||  ||||| ||||||| ||||||   ||||  
uggau aac   ugua ggugucG  GGGUC GUUGUUC UCGAac   uugc g
     c   agg    -       AG     G       G      ---    g 

>gga-mir-1765 (-59.00)   [gga-miR-1765:29-48]

cgag     ----  g      -a  g a  a    A    GG       -  G  g 
    ggcuc    cc gcagcc  cg g gg gCGG GCGC  CCCUGCG CU cg g
    |||||    || ||||||  || | || |||| ||||  ||||||| || ||  
    cuggg    gg cguugg  gc u cc uguc cgcg  ggggcgc ga gc c
---g     cguc  g      gg  g g  g    -    -a       c  g  c 

>gga-mir-1766-1 (-23.80)   [gga-miR-1766:20-40]

u    -u   uuu   -u    GCA      UG  -AA   A    uu 
 uggc  guc   cuc  uguG   GAUGAU  AA   CUG Gcua  g
 ||||  |||   |||  ||||   ||||||  ||   ||| ||||   
 aucg  uag   gag  guau   cuauua  uu   gac cggu  c
a    uu   uuc   uu    --a      gu  acg   a    cc 

>gga-mir-1766-2 (-24.10)   [gga-miR-1766:20-40]

u    -u   uuu   -u    GCA      UG  -AA   A    uu 
 uggc  guc   cuc  uguG   GAUGAU  AA   CUG Gcua  g
 ||||  |||   |||  ||||   ||||||  ||   ||| ||||   
 aucg  uag   gag  guau   cuauua  uu   gac cgau  c
a    uu   uuc   uu    --a      gu  acg   a    cc 

>gga-mir-1767 (-31.70)   [gga-miR-1767:35-54]

    -        ggccg      u    g 
ggcu ggcugcug     cuucuu ccuc g
|||| ||||||||     |||||| |||| g
ucga UCGACGAC     GAGGAG GGAg u
    g        ---AA      C    a 

>gga-mir-1768 (-55.50)   [gga-miR-1768:46-67]

                               gc uug 
uaucagcucaucagcaugacaauccucugcu  c   g
|||||||||||||||||||||||||||||||  |   g
auaguugaguAGUCGUGCUGUUAGGAGACGA  g   a
                               Gu uug 

>gga-mir-1769 (-38.50)   [gga-miR-1769*:23-44] [gga-miR-1769:61-83]

----gug       gug   u     C       UUUUC      ----    u a 
       uggaugu   ugg guggc UUCAGGC     UCACAC    CUGu g g
       |||||||   ||| ||||| |||||||     ||||||    |||| |  
       acuuaca   acc uaCUG AAGUCCG     AGUGUG    gacg c c
cguauaa       ---   u     A       UCUAA      Aacu    u u 

>gga-mir-1770 (-58.50)   [gga-miR-1770:56-77]

u  accau   au   c  u   -cu           g      -   -  a 
 gc     ggg  gcg gc gcc   cucccucccuc cucccc gca cu a
 ||     |||  ||| || |||   ||||||||||| |||||| ||| || c
 cg     ccc  cgc cg cgg   GGGGGAGGGAG GAGGGG CGU gg a
a  ---cu   --   -  u   acu           -      G   C  u 

>gga-mir-1771 (-36.00)   [gga-miR-1771:54-74]

     ga   uc       -c  ugaa      c       aaa 
cagca  gag  ucagagg  ac    ccuugg agguuuu   c
|||||  |||  |||||||  ||    |||||| |||||||    
gucgu  uuu  AGUCUCC  UG    GGAACC UCcaggg   c
     ag   ua       UU  --UC      -       agu 

>gga-mir-1772 (-33.20)   [gga-miR-1772*:13-34] [gga-miR-1772:46-66]

       u    -C  U C     - A     A U 
ccgcugc cgcc  GC G CAGCG G GAACG G U
||||||| ||||  || | ||||| | ||||| | g
ggcGACG GUGG  UG C GUUGC c cuugc c u
       -    CU  U U     U c     - g 

>gga-mir-1773 (-34.90)   [gga-miR-1773*:12-34] [gga-miR-1773:50-70]

caac     c UG     G  GG A     G   --u  c 
    cucug u  GGGGA GA  G CCUCU CUU   gc a
    ||||| |  ||||| ||  | ||||| |||   || g
    gggac G  CCCCU UU  C GGAGA Gag   cg g
-gua     A GU     G  -A -     G   uuu  u 

>gga-mir-1774 (-32.40)   [gga-miR-1774:57-77]

gggaaucuaacccgua        g gc       a   --  u  u 
                aagcaggg c  cagcagg ggu  gc ug u
                |||||||| |  ||||||| |||  || ||  
                UUCGUCUU G  GUCGUCC CCg  ug ac c
-------------cuC        G -A       -   uc  u  u 

>gga-mir-1775 (-31.01)   [gga-miR-1775:58-79]

    au   c  u    g    gu  a        acaaaca    a 
gugu  gag uc gaau cuuc  gc acaggaag       ggcu a
||||  ||| || |||| ||||  || ||||||||       |||| g
caca  cuc AG CUUA GAAG  CG UGUCCUuc       cuga c
    gu   u  U    -    AC  A        -------    g 

>gga-mir-1776 (-41.60)   [gga-miR-1776:24-45]

u    uauu   ac       u              AG       uc  gc 
 ggua    guu  ugcuuua cUGUAGUGAUAAGG  ACUGUCU  cu  a
 ||||    |||  ||||||| ||||||||||||||  |||||||  ||   
 ccgu    caa  augaaau gauauuacuauucc  ugauaga  ga  g
a    -ucu   -a       c              gu       -u  ac 

>gga-mir-1777 (-60.60)   [gga-miR-1777:22-41]

gcuucaccu    -    a   G            -    G   cag   c 
         uccc cucc gcu UGGGCGGUGCGG GGCG CGu   ggc c
         |||| |||| ||| |||||||||||| |||| |||   ||| a
         gggg gagg ugg gcccgcuacgcc cugc gcg   ccg c
--------c    u    g   g            a    g   aca   u 

>gga-mir-1778 (-31.70)   [gga-miR-1778:5-26]

   g        AGA          Ug -ag  cug 
guu GAGGGAAG   AAUGGUCUGC  g   ga   u
||| ||||||||   ||||||||||  |   ||    
cga cucccuuc   uuacuagacg  u   uu   u
   g        aua          gu aaa  uau 

>gga-mir-1779 (-43.00)   [gga-miR-1779:58-80]

       ga        c  c     cu   a cu   -ug   ua 
guguguc  ugccucag ug uccag  cac g  ugg   guu  a
|||||||  |||||||| || |||||  ||| |  |||   |||   
cacacgg  augGAGUC AC AGGUC  GUG C  Acc   uaa  a
       ac        C  A     AG   - AG   uca   uu 

>gga-mir-1780 (-28.20)   [gga-miR-1780:46-66]

----aguc   gc      gca     aaca    cu  ug 
        agg  ugggga   gcagu    gcag  gc  g
        |||  ||||||   |||||    ||||  ||  u
        ucC  ACCUCU   CGUCA    CGUC  cg  u
ucguuguc   UC      --A     ---G    Uc  uc 

>gga-mir-1781 (-47.30)   [gga-miR-1781*:20-41] [gga-miR-1781:58-78]

    aca      g             A            Aau    u 
ggag   aggagc uguuuAACAGCUG GUGAUUUAAAGC   caaa u
||||   |||||| ||||||||||||| ||||||||||||   ||||  
cuuc   uucucg acaAGUUGUCGAC UACUAAAUUUcg   guuu c
    --g      a             G            ---    c 

>gga-mir-1782 (-38.30)   [gga-miR-1782:60-80]

u uu   cu      -a    ag    u      a     u      aga 
 g  aga  gccugg  uucu  cccu cuccaa ugaau uuuaau   a
 |  |||  ||||||  ||||  |||| |||||| ||||| ||||||    
 c  ucu  uggacc  aggA  GGGA GAGGUU ACUUA Aaauua   a
a uc   -c      cg    CA    C      -     C      aua 

>gga-mir-1783 (-34.43)   [gga-miR-1783:20-42]

      --u          c U  UC   AC      A  G   ugcuacu 
cugaag   guuaugaaau g GC  UGA  GAGCUG GA GCA       u
||||||   |||||||||| | ||  |||  |||||| || |||       u
gacuuu   caauacuuua c cg  acu  cucgac cu cgu       c
      ccu          - u  uu   cu      -  a   uacuagu 

>gga-mir-1784 (-49.50)   [gga-miR-1784*:24-45]

u   -ccaa         g                  G  A      --  a 
 gga     uuucuuggg cccaaUUCUGCUCUUAUU AA UCAGUg  ag g
 |||     ||||||||| |||||||||||||||||| || ||||||  ||  
 ccu     gaagaaucc ggguuaagacgaggauaa uu aguuac  uc u
a   uuaga         a                  a  c      cg  u 

>gga-mir-1785 (-60.50)   [gga-miR-1785:21-42]

      a  -c              -       --CU     C    ugu  u 
ggagcg gc  cugugugcucUGAG GGCAGCA    GUGUC GGGc   ga g
|||||| ||  |||||||||||||| |||||||    ||||| ||||   ||  
ucucgu cg  gguacacgaggcuc ucgucgu    cgcgg cccg   cu c
      g  uc              g       ccgu     a    --u  u 

>gga-mir-1786 (-29.20)   [gga-miR-1786:64-84]

   g   cc   -c     c      cu       a       caaau   gcau 
ucu cuc  uga  ugcuu uaauuc  uaacaca caggaaa     uca    u
||| |||  |||  ||||| ||||||  ||||||| |||||||     |||    a
aga gag  acu  augaa auuaag  AUUGUGU GUCUUUU     Agu    a
   -   aa   uc     a      UC       C       --CUU   auaa 

>gga-mir-1787 (-36.50)   [gga-miR-1787:58-77]

   -g  -cc             c     cu u  uu   u  au 
gcc  gu   uuuucccccuucc uaaac  c cu  gcu cc  g
|||  ||   ||||||||||||| |||||  | ||  ||| ||  g
cgg  ca   aaaAGGGGGAAGG AUUUG  G ga  ugg gg  u
   ag  aaa             C     UU U  -c   u  cg 

>gga-mir-1788 (-48.10)   [gga-miR-1788-5p:19-40] [gga-miR-1788-3p:57-77]

ccacc ug u  g                C        ---  g  u 
     c  c gu ucccgGGCUUGUUUUC GUUGCCUG   CG ug g
     |  | || |||||||||||||||| ||||||||   || || u
     g  g cg aggGUCUGAACGAAAG CGACGGAC   gu ac u
----- gu u  g                -        uca  g  g 

>gga-mir-1789 (-24.60)   [gga-miR-1789:41-62]

    g  c  a    c   a       caa 
ccau ca cc caag aca ccaagcc   a
|||| || || |||| ||| |||||||   u
gGUA GU GG GUUC UGU GGUuugg   g
    A  A  C    A   G       aaa 

>gga-mir-1790 (-45.70)   [gga-miR-1790:61-80]

       ---   gaug     gggg  ggg    g      g   u   g g  gg 
ggcgggg   cgg    ccgcu    cc   ccuc ugccgu cuc gcu g cc  a
|||||||   |||    |||||    ||   |||| |||||| ||| ||| | ||   
ucgcuuc   guc    ggcga    gg   GGGG GUGGCG GAG UGG C gg  g
       uuu   --ga     ---a  gaA    -      G   -   G -  aa 

>gga-mir-1791 (-42.90)   [gga-miR-1791*:14-36] [gga-miR-1791:51-72]

u  a   c     UG G             GC A     ug 
 ga gca caugu  G CUGCAUCAGUCAU  C UGuua  a
 || ||| |||||  | |||||||||||||  | |||||  a
 cu ugu gugca  C GACGUAGUCAGUG  G Gcaau  a
a  g   a     GU G             UA C     cc 

>gga-mir-1792 (-70.50)   [gga-miR-1792:21-43]

                     C    G            G    caag 
uccaaagccaccucuaugcuG GAUA CUCAGGAACACU CAGu    a
||||||||||||||||||||| |||| |||||||||||| ||||    a
agguuuugguggggaugcgac cuau ggguccuuguga guca    c
                     a    g            g    uaca 

>gga-mir-1793 (-37.00)   [gga-miR-1793:22-44]

    cuaa          -u        G  -   AAG     A    uu 
ucug    gcggcagaag  aaUGUAAG AG CAG   UGUGA GCag  u
||||    ||||||||||  |||||||| || |||   ||||| ||||  a
agac    cguugucuuu  uuguauuc uc guc   acacu cguc  a
    -ugc          uc        a  a   --a     -    ug 

>gga-mir-1794 (-35.20)   [gga-miR-1794:59-81]

   --      - uuu    --ca    uu     uc      a --gaa  u 
ggc  cauguc c   ccuu    gccc  uguuc  ucuggc g     ca g
|||  |||||| |   ||||    ||||  |||||  |||||| |     ||  
ucg  guacag g   ggaA    CGGG  ACAGG  AGACCG c     gu g
   ac      c --u    ACGA    -U     UA      a aaaag  g 

>gga-mir-1795 (-24.74)   [gga-miR-1795:7-28]

     g  -AA      --------GAA     -CU      u 
ggaga GC   GAUGAA           CAGGC   GUcagu u
||||| ||   ||||||           |||||   ||||||  
ccucu ug   cuacuu           gucug   cgguca g
     a  cac      aaaaacgaagg     cau      c 

>gga-mir-1796 (-22.50)   [gga-miR-1796:15-35]

    c   caaaag  AC         -    C  Ag 
cagc uug      GA  UGCUGAAGG AGGG UG  g
|||| |||      ||  ||||||||| |||| ||   
gucg aac      cu  acgacuucu uucc ac  g
    -   --caaa  -c         g    -  uu 

>gga-mir-1797 (-42.20)   [gga-miR-1797:57-78]

     ---     u      --cca   cu    c   ga    -   c  ca 
gggcu   gaggc cgcagu     agu  cugc cag  ccaa cug ug  g
|||||   ||||| ||||||     |||  |||| |||  |||| ||| ||   
uccgg   cuuug gugucg     UCA  GACG GUC  GGUU Gac ac  c
     uac     -      acacG   AG    A   AA    C   a  ac 

>gga-mir-1756b (-47.50)   [gga-miR-1756b:56-78]

u      c gu a                 u u     --aa  a 
 gggcca a  c cagcugguguaaaucag g gagcu    ug a
 |||||| |  | ||||||||||||||||| | |||||    ||  
 cucggu u  G GUCGAUCACAUUUAGUC C UUcga    ac g
a      a ug A                 U -     ggug  u 

>gga-mir-1798 (-29.87)   [gga-miR-1798*:24-43] [gga-miR-1798:59-80]

     aauuagu       aguu     G       A       uguaau 
cucau       uuuauuc    AACGU ACACUUU GAAAACc      g
|||||       |||||||    ||||| ||||||| |||||||      c
gagug       aaauagg    UUGCG UGUGAAG CUUUUGG      u
     -------       guau     A       A       Ugaaua 

>gga-mir-1799 (-26.00)   [gga-miR-1799:59-79]

   a        au           aca     ua   g  c 
cuu uuaguuag  gucauuauuuu   agccg  acu au a
||| ||||||||  |||||||||||   |||||  ||| || a
gaa gAUUAGUC  UAGUAGUGAAG   Ucggu  uga ua a
   c        CG           ---     ca   g  c 

>gga-mir-1800 (-22.90)   [gga-miR-1800:10-30]

    cc  gA   -  U      AUCU      --      
ccug  gu  CUA CG GAUGCG    GAUGgc  ucaga 
||||  ||  ||| || ||||||    ||||||  |||| g
ggac  cg  ggu gu cuacgu    cugucg  agucg 
    -u  uc   c  c      -cuc      uu      

>gga-mir-1801 (-61.00)   [gga-miR-1801:23-44]

--u   --a   aa   -       g                    -C       
   ggg   gga  ugg acuaugg uCCCGGCAUGCUGCACUGUC  UGuaga 
   |||   |||  ||| ||||||| ||||||||||||||||||||  ||||| g
   ccc   ccu  acu ugauguc ggggucguacggcgugacgg  gcgucg 
acc   aga   cg   g       g                    cc       

>gga-mir-1802 (-27.10)   [gga-miR-1802:15-36]

     c      ugC  U  C   UUU         aca 
caagu acaggg   AG GA UGC   UGUGCUUAU   g
||||| ||||||   || || |||   |||||||||   a
guuca uguccu   uc cu aug   acacgaaua   g
     -      uau  c  u   ucu         aau 

>gga-mir-122b (-17.50)   [gga-miR-122b:12-31]

       agacAG          --G       g ugg 
auuuuuc      UGUGACACUG   UGUUUUU u   g
|||||||      ||||||||||   ||||||| |   u
uggaaag      auauugugac   gcgaggg g   g
       auacag          gga       g uuu 

>gga-mir-1803 (-49.10)   [gga-miR-1803:52-72]

   -cuu     a         g   a   u            u 
gga    agggc ugauccaga ccc uug agucaaugggag c
|||    ||||| ||||||||| ||| ||| ||||||||||||  
ccu    uuccg acuaGGUUU GGG GAC UCAGUUAccuuu u
   ucau     g         G   C   U            u 

>gga-mir-1804 (-23.10)   [gga-miR-1804:61-82]

guuguuaaaaca     gguua      -   uac      ag  gg 
            caguu     acagcu cug   ugcugg  gg  a
            |||||     |||||| |||   ||||||  ||   
            GUCGA     UGUUGA GAC   acgauu  uc  u
--------cGAC     --AAG      A   --U      gu  aa 

>gga-mir-1805 (-33.10)   [gga-miR-1805-5p:13-34] [gga-miR-1805-3p:53-73]

    ua   u            C      -    A cuu  ca 
ggaa  uuc ggGAGUUGUAGU UUUCAA ACAG g   ug  a
||||  ||| |||||||||||| |||||| |||| |   ||   
ccuu  aag ccCUCGACAUCA AAGGUU UGUc c   ac  g
    -c   u            C      A    - -au  ag 

>gga-mir-1806 (-37.70)   [gga-miR-1806:52-73]

u  ug   -       uu     ca          -   g  u 
 gc  auu uuaucua  ccuug  gguuuugccu guc gu u
 ||  ||| |||||||  |||||  |||||||||| ||| ||  
 cg  uaa gauAGGU  GGAAC  CUAGGACGGA cag ca a
a  gu   c       CU     -A          a   a  a 

>gga-mir-1807 (-48.10)   [gga-miR-1807:57-78]

          ag        a       a       uc cag  g 
ggcuuucaga  agcucagc uuagccu auuuugc  c   ug u
||||||||||  |||||||| ||||||| |||||||  |   ||  
ucgaaagucu  ucGAGUCG GAUCGGA UAAGACG  g   gc a
          --        A       G       ga uaa  u 

>gga-mir-1808 (-28.50)   [gga-miR-1808:19-41]

cuauuu  g -       cUU  U       -  AUA     -    c 
      gu u cuucagg   UG UGGGAAU GA   CAUAU Uguu u
      || | |||||||   || ||||||| ||   ||||| |||| g
      ca a ggagucc   ac acccuua cu   guaua acaa c
---gau  g c       ucc  u       a  --g     c    a 

>gga-mir-1809 (-42.00)   [gga-miR-1809:27-50]

cag  c   g     -   au   u    GU       UU  -      A  u  ca 
   gg aaa ggguu ggu  ggc auAC  GGGAAGU  GG CAGAGC UG gc  u
   || ||| ||||| |||  ||| ||||  |||||||  || |||||| || ||   
   uc uuu cucaa ucg  ccg uaug  uccuucg  cc gucucg ac ug  a
--g  -   g     a   ac   u    --       uu  a      -  u  ug 

>gga-mir-1811 (-47.50)   [gga-miR-1811:13-32]

  ug    -    U   G                --   au 
gc  acau gguu AUU CAGCGCUGGGUGCAUg  gag  c
||  |||| |||| ||| ||||||||||||||||  |||  u
cg  ugua ccaa uaa gucgcgacccacgugc  uuc  u
  gu    a    -   a                ga   ac 

>gga-mir-1812 (-46.60)   [gga-miR-1812:18-39]

-cuu                            C       agg 
    uauugggaaccuagAUAUAUACUGUAUA UGUGUCA   u
    |||||||||||||||||||||||||||| |||||||   u
    auaaucuuuggaucuauauaugacauau auacagu   u
gaac                            c       aga 

>gga-mir-101-2 (-37.80)   [gga-miR-101:48-69]

   gc   ggc                  a    --gu u 
gcu  ccu   ucaguuaucacagugcug ugcu    c c
|||  |||   |||||||||||||||||| ||||    |  
cgg  ggA   AGUCAAUAGUGUCAUGAC AUGg    g u
   ua   ---                  -    aaau u 

>gga-mir-10a (-29.06)   [gga-miR-10a:8-29] [gga-miR-10a*:49-69]

        A    G     C          uaaagg 
cuauaugU CCCU UAGAU CGAAUUUGUg      a
|||||||| |||| ||||| ||||||||||      a
gauguAUA GGGG AUCUA GCUUAAAcac      g
        A    -     U          uggguu 

>gga-mir-130c (-39.90)   [gga-miR-130c*:21-42] [gga-miR-130c:60-81]

uuga   g  u   u    c        U          A  -a   au 
    gcg ug cug ccag GCCCUUUU AUGUUGUACU CU  gug  c
    ||| || ||| |||| |||||||| |||||||||| ||  |||   
    cgu ac gac gguU CGGGAAAA UGUAACGUGA ga  cac  a
----   g  -   c    A        U          C  aa   au 

>gga-mir-146c-1 (-54.33)   [gga-miR-146c:34-56] [gga-miR-146c*:76-97]

---ga  a     cgaaucuug    uu  c    cU           U           uuu  au 
     ag uguga         gcag  cc agcu  GAGAACUGAAU CCAUGGACUGg   ca  u
     || |||||         ||||  || ||||  ||||||||||| |||||||||||   ||   
     uc acacu         cguc  gg ucga  CUCUUGACUUA GGUACCUGAcu   gu  c
aaucg  a     -ucaaacua    --  u    -U           U           ugc  ac 

>gga-mir-15c (-33.90)   [gga-miR-15c:11-32] [gga-miR-15c*:47-68]

u    a    UA     A  UC          gggac 
 gagg gaug  GCAGC CA  AUGGUUUGUA     a
 |||| ||||  ||||| ||  ||||||||||      
 cucc uuAC  CGUCG GU  UACCAGACau     a
a    a    UC     G  CU          agagg 

>gga-mir-16c (-31.50)   [gga-miR-16c:5-26]

   cU       CGUA          ---u g   a 
gcu  AGCAGCA    AAUACUGGAG    g ggg u
|||  |||||||    ||||||||||    | |||  
uga  ucgucgu    uuaugaccuc    u ucc c
   uu       uacg          ucgu g   g 

>gga-mir-193a (-45.70)   [gga-miR-193a:48-69]

              u     cg   g  a   -  g u 
agcugagggcuggg cuuug  ggc ag uga ga g u
|||||||||||||| |||||  ||| || ||| || |  
ucggcucuUGACCC GAAAC  CCG UC Acu cu u c
              U     AU   G  A   u  g g 

>gga-mir-301b (-32.20)   [gga-miR-301b-5p:17-38] [gga-miR-301b-3p:54-78]

guug     aa  a     C    ---U          A  -  acu 
    cugcu  cg auGCU UGAC    UUAUUGCACU CU gu   u
    |||||  || ||||| ||||    |||||||||| || ||    
    gacga  gu UACGA ACUG    GAUAACGUGA ga cg   c
--ga     aa  c     A    UUAU          C  u  aca 

>gga-mir-449b (-45.40)   [gga-miR-449b:13-35] [gga-miR-449b*:51-71]

-------------    ug  u  aA         CUGU   C       g gc 
             ccug  gc gg  GGCAGUGUG    UAG GGCUGcu u  u
             ||||  || ||  |||||||||    ||| ||||||| |  g
             ggac  cg cC  CCGUCACAC    AUC CUGACga g  a
cgucaucagauag    gu  u  -A         ---C   A       g ua 

>gga-mir-458 (-46.40)   [gga-miR-458*:30-50] [gga-miR-458:66-87]

a   g  cc  -----gg  gu      g       CG      UC        Aa    c 
 gca ag  gc       cc  ggugca auggcAG  CCAUUU  AGAGCUAU  acag g
 ||| ||  ||       ||  |||||| |||||||  ||||||  ||||||||  |||| u
 cgu uc  cg       gg  ucaugu uacCGUC  GGUAAG  UCUCGAUA  uguu c
-   a  ua  acaaaaa  --      a       AU      UU        -c    a 

>mml-mir-1-1 (-36.50)   [mml-miR-1:49-70]

        a                gc     ---   a 
gcuuggga acauacuucuuuauau  ccaua   ugg c
|||||||| ||||||||||||||||  |||||   ||| c
cggacucU UGUAUGAAGAAAUGUA  GGUau   auc u
        A                -A     cga   g 

>mml-mir-1-2 (-28.90)   [mml-miR-1:46-67]

-                      ac     ugaa au 
 cagaguacauacuucuuuaugu  ccaua    c  a
 ||||||||||||||||||||||  |||||    |   
 guuuUAUGUAUGAAGAAAUGUA  GGUau    g  c
g                      -A     --cg aa 

>mml-let-7a-1 (-35.60)   [mml-let-7a:6-27]

     U   GU                uuagggucacac 
uggga GAG  AGUAGGUUGUAUAGUU            c
||||| |||  ||||||||||||||||            c
auccu uuc  ucaucuaacauaucaa            a
     -   ug                uagagggucacc 

>mml-let-7a-2 (-25.10)   [mml-let-7a:5-26]

   cU   G   U             uagaa ua a 
agg  GAG UAG AGGUUGUAUAGUU     u  c u
|||  ||| ||| |||||||||||||     |  | c
ucc  uuc auc uccgacaugucaa     a  g a
   -u   g   c             --uag gg a 

>mml-let-7a-3 (-34.40)   [mml-let-7a:4-25]

   U   GU                ---------        
ggg GAG  AGUAGGUUGUAUAGUU         uggggcu 
||| |||  ||||||||||||||||         |||||| c
ucc uuc  ucaucuaacauaucaa         gucccgu 
   u   ug                uaggguauc        

>mml-let-7b (-47.00)   [mml-let-7b:6-27]

     U                     ----  ---a      u 
cgggg GAGGUAGUAGGUUGUGUGGUU    uc    gggcag g
||||| |||||||||||||||||||||    ||    |||||| a
guccc uuccgucauccaacauaucaa    ag    cccguu u
     -                     uaga  acuc      g 

>mml-let-7c (-33.50)   [mml-let-7c:11-32]

  a      uU   G   U             ua  g ua a 
gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
|| ||||||  ||| ||| |||||||||||||  || |  | c
cg agguuc  uuc auc uccaacaugucaa  uu a  g c
  -      cu   g   u             --  g gg u 

>mml-let-7d (-42.60)   [mml-let-7d:8-29]

       A              C      uuagggcagggauu 
ccuagga GAGGUAGUAGGUUG AUAGUU              u
||||||| |||||||||||||| ||||||               
ggauucu uuccgucguccagc uaucaa              u
       -              a      uggaggaacacccg 

>mml-let-7e (-37.80)   [mml-let-7e:8-29]

  c   cU   G                U  ----gga  a 
cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg c
|| |||  ||| |||||||||||||||| ||       ||  
gg ccc  uuc auccuccggcauauca cu       cc a
  a   cu   g                -  agaggaa  c 

>mml-let-7f-1 (-43.30)   [mml-let-7f:7-28]

    a UG                      ---------       u 
ucag g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| |  ||||||||||||||||||||||         ||||||| a
aguc c  uccguuaucuaacauaucaaua         ucccauu u
    - cu                      gaggacuug       u 

>mml-let-7f-2 (-40.70)   [mml-let-7f:8-29]

u      U   GU                uuagggucauac 
 guggga GAG  AGUAGAUUGUAUAGUU            c
 |||||| |||  ||||||||||||||||             
 cacccu uuc  ucaucugacauaucaa            c
g      -   ug                uagagguucuac 

>mml-let-7g (-40.50)   [mml-let-7g:5-26]

a   U        A            ugagg    -a  a    a 
 ggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
 ||| |||||||| ||||||||||||     ||||  || ||||  
 ccg uuccguca cggacaugucaa     uaga  ac augg c
a   -        c            -----    gg  -    c 

>mml-let-7i (-42.10)   [mml-let-7i:6-27]

     U                 U   --------  u     ugu 
cuggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
||||| ||||||||||||||||| |||        || |||||   a
gaucg uuccgucaucgaacgcg caa        uc gcccg   c
     -                 u   uagaggug  -     uua 

>mml-mir-7-1 (-48.00)   [mml-miR-7:24-46]

--u    u  -      a  u        A     A       U      --     a 
   ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUGUu  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguauacc ucuga cacuaaa caacag  aaauc a
gac    c  u      -  c        g     -       -      uu     a 

>mml-mir-7-2 (-48.00)   [mml-miR-7:32-54]

cuggauacagag  a          c    c   A     A U     U       ucuua 
            ug aguggcuggc ccgu UGG AGACU G GAUUU GUUGUug     c
            || |||||||||| |||| ||| ||||| | ||||| |||||||      
            ac uuaccgaccg ggua gcc ucuga c cuaaa caacaac     u
------------  g          u    a   g     c -     -       ucgcg 

>mml-mir-7-3 (-39.10)   [mml-miR-7:31-53]

agauua   u  cuau     a        U  AA A  A       U      c  au 
      gag gg    ggucu gugcugug GG  G CU GUGAUUU GUUGUu ug  g
      ||| ||    ||||| |||||||| ||  | || ||||||| |||||| ||   
      cuu cc    ucaga cgcgauac cc  c ga cacuaaa caacag au  u
---cag   c  ----     -        u  gg c  -       -      c  cg 

>mml-mir-9-1 (-42.00)   [mml-miR-9:16-38]

c       guug   UC               G      u  ug 
 gggguug    uua  UUUGGUUAUCUAGCU UAUGAg gg  u
 |||||||    |||  ||||||||||||||| |||||| ||  g
 ccccaau    aau  aagccaauagaucga auacuu cu  g
a       -aaa   ga               a      -  ga 

>mml-mir-9-2 (-40.10)   [mml-miR-9:16-38]

g    c     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aau  aagccaauagaucga auacuu  g u
a    -     a   ga               a      cu g 

>mml-mir-9-3 (-41.20)   [mml-miR-9:16-38]

g    cc       -  C               GUAU     c a 
 gagg  cguuucu cU UUUGGUUAUCUAGCU    GAgug c c
 ||||  ||||||| || |||||||||||||||    ||||| | a
 cucu  guaaaga ga aagccaauagaucga    cucgc g g
a    ca       u  -               -acu     c a 

>mml-mir-10a (-32.39)   [mml-miR-10a:22-44]

----gauc   --c    uu        A    G     C          uaaggaa 
        ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
        |||   ||||  |||||||| |||| ||||| ||||||||||        
        aca   acag  gauguaua gggg aucua gcuuaaacac       u
cucgccuc   aau    uu        a    -     u          ugguguu 

>mml-mir-10b (-44.70)   [mml-miR-10b:27-49]

cca      guaa     u        A    G     C          -ug   u 
   gagguu    cguug cuauauaU CCCU UAGAA CGAAUUUGUG   gua c
   ||||||    ||||| |||||||| |||| ||||| ||||||||||   |||  
   cuucaa    guagc gguauaua gggg aucuu gcuuagacac   uau c
--a      aaac     u        a    -     a          uga   a 

>mml-mir-16-2 (-30.50)   [mml-miR-16:10-31]

  uc    cU         UA        C  ag   aau 
gu  cacu  AGCAGCACG  AAUAUUGG Gu  uga   a
||  ||||  |||||||||  |||||||| ||  |||    
ca  guga  ucgucgugu  uuauaacc ca  auu   u
  gu    cu         ca        a  -a   aug 

>mml-mir-18b (-19.80)   [mml-miR-18b:6-28]

ug     --   U    C   U     UA  --g     
  uguUA  AGG GCAU UAG GCAGU  Gu   aagc 
  |||||  ||| |||| ||| |||||  ||   ||| a
  acggu  ucc cgua auc cguca  ua   uucg 
--     cu   c    a   c     uc  aga     

>mml-mir-20b (-29.80)   [mml-miR-20b:6-28]

     -CA           G     -GU    uu 
aguac   AAGUGCUCAUA UGCAG   AGuu  g
|||||   ||||||||||| |||||   ||||  g
ucaug   uucacgggugu auguc   ucag  c
     acc           g     auc    ua 

>mml-mir-23b (-36.04)   [mml-miR-23b:58-78]

c     u c  -   c   u   --          -  c      gugacu 
 ucagg g uc ugg ugc ugg  guuccuggca ug ugauuu      u
 ||||| | || ||| ||| |||  |||||||||| || ||||||       
 gguuc c ag acc acg aCC  UAGGGACCGU AC ACUAaa      a
c     - -  c   a   c   AU          U  -      auuaga 

>mml-mir-26a-2 (-42.24)   [mml-miR-26a:14-35]

      gg ug  UU         C          guuucc 
ggcugu  c  ga  CAAGUAAUC AGGAUAGGCU      a
||||||  |  ||  ||||||||| ||||||||||       
ucgacg  g  cu  guucauuag ucuuauccgg      u
      ga gu  uu         u          aguguc 

>mml-mir-26b (-40.10)   [mml-miR-26b:12-32]

    ga   -   U        UC           u ug 
ccgg  ccc agU CAAGUAAU  AGGAUAGGUug g  c
||||  ||| ||| ||||||||  ||||||||||| |   
ggcc  ggg ucg guucauua  ucuuguccgac c  u
    ag   c   -        cc           - ug 

>mml-mir-27b (-50.40)   [mml-miR-27b:61-81]

-    -    aaca                  auug        ugau     
 accu cucu    aggugcagagcuuagcug    gugaacag    uggu 
 |||| ||||    ||||||||||||||||||    ||||||||    ||| u
 ugga gaga    uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
g    a    --ag                  --GA        --uc     

>mml-mir-29b-1 (-34.02)   [mml-miR-29b:51-73]

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucUU UGACUAAAGU UACCAC  GAUcug     g
g         G          U      --      uuagu 

>mml-mir-29b-2 (-31.24)   [mml-miR-29b:52-74]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuUU UGACUAAAGU UACCAC GA Ucua      u
         G          U      -  -    uguuuc 

>mml-mir-29c (-35.40)   [mml-miR-29c:54-75]

a         -  ggc           ucc       ---     u 
 ucucuuaca ca   ugaccgauuuc   ugguguu   cagag c
 ||||||||| ||   |||||||||||   |||||||   ||||| u
 gggggaugu gu   AUUGGCUAAAG   ACCACGA   guuuu g
a         a  ---           UUU       Ucu     u 

>mml-mir-30c-1 (-35.40)   [mml-miR-30c:17-39]

a     cu    ugu U       U   ACA         ---g  a 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    ug g
 |||||  ||||   | ||||||| |||   |||||||||    ||  
 gguac  cguc   c cauuugu ggg   gagggucgg    ac c
a     --    uuc u       u   --a         ugga  u 

>mml-mir-30c-2 (-24.54)   [mml-miR-30c:7-29]

   uacU       U   ACA         guggaa 
aga    GUAAACA CCU   CUCUCAGCu      a
|||    ||||||| |||   |||||||||       
ucu    cauuugu gga   gagggucga      g
   cucu       c   --a         aagaau 

>mml-mir-30d (-28.10)   [mml-miR-30d:5-26]

-uu  U         CCC           gua  ac 
   gu GUAAACAUC   GACUGGAAGcu   ag  a
   || |||||||||   |||||||||||   ||   
   cg cguuuguag   cugacuuucga   uc  c
cau  u         --a           --a  ga 

>mml-mir-30e (-53.00)   [mml-miR-30e:17-38]

g        uc  ua            UU           g aag u 
 ggcagucu  gc  cUGUAAACAUCC  GACUGGAAGcu u   g g
 ||||||||  ||  ||||||||||||  ||||||||||| |   |  
 ccgucgga  cg  gacauuuguagg  cugacuuucga g   c u
a        --  gc            --           g aga u 

>mml-mir-33b (-59.50)   [mml-miR-33b:16-35]

---------gcggg    c   c  -          UU         g   g 
              cggc ccg gG UGCAUUGCUG  GCAUUGCac ugu u
              |||| ||| || ||||||||||  ||||||||| ||| g
              gccg ggc cc acgugacggc  cgugacgug gcg a
cgccacgguccccg    a   -  g          uc         g   g 

>mml-mir-34b (-33.80)   [mml-miR-34b:50-71]

     cg    -gua       uca    c        -  g 
gugcu  guuu    ggcagug   uuag ugauugua cu u
|||||  ||||    |||||||   |||| |||||||| || g
cacgg  caaa    CCGUCAC   AAUC ACUAACau gg g
     aa    acUA       CUC    -        u  u 

>mml-mir-34c (-30.90)   [mml-miR-34c-5p:13-35] [mml-miR-34c-3p:46-67]

     ag     A   A    A     C      C  a 
agucu  uuacc GGC GUGU GUUAG UGAUUG ug u
|||||  ||||| ||| |||| ||||| |||||| ||  
uuaga  aauGG CCG CACA CAAUC ACUAAc au a
     aa     A   G    C     -      c  g 

>mml-mir-92a-2 (-30.20)   [mml-miR-92a:48-69]

  a   c     g     uu  u   u     -      
uc ucc ugggu gggau  gu gca uacuu guguu 
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uauau 
  a   U     G     UU  -   U     a      

>mml-mir-92b (-66.12)   [mml-miR-92b:61-82]

c     cc   c    g     ga       c            uucuu 
 gggcc  ggg gggc ggagg  cgggacg ggugcaguguug     u
 |||||  ||| |||| |||||  ||||||| ||||||||||||     c
 cccgg  ccc cccg CCUCC  GCCCUGC UCACGUUAUaac     c
-     -c   -    g     -G       -            cgccc 

>mml-mir-95 (-37.50)   [mml-miR-95:49-70]

a   c      ca          gu         -   aa 
 aca aguggg  cucaauaaau  cuguugaau uga  u
 ||| ||||||  ||||||||||  ||||||||| |||   
 ugu ucaccc  GAGUUAUUUA  GGCAACUUa auu  g
g   c      AC          UG         c   gc 

>mml-mir-99b (-30.00)   [mml-miR-99b:7-28]

     cC         AC   C    C - -   c 
ggcac  ACCCGUAGA  CGA CUUG G g ggc u
|||||  |||||||||  ||| |||| | | |||  
cugug  ugggugucu  gcu gaac c c ccg u
     cc         gu   c    a a g   c 

>mml-mir-101-2 (-31.40)   [mml-miR-101:49-70]

  ug  c                    c a    guaua 
ac  uc uuuuucgguuaucaugguac g ugcu     u
||  || |||||||||||||||||||| | ||||      
ug  gg aaGAAGUCAAUAGUGUCAUG C AUgg     c
  gu  u                    A -    aaagu 

>mml-mir-103-2 (-28.10)   [mml-miR-103:48-70]

uu  g      --   u  u           ----    ua 
  gu cuuuca  gcu cu uacagugcugc    cuug  g
  || ||||||  ||| || |||||||||||    ||||  c
  ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
ac  a      AU   -  C           Aacu    uu 

>mml-mir-105-2 (-41.30)   [mml-miR-105:13-35]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUGGUg c  c
   ||||||||| || ||||||||||  |||||||| |  u
   ugugguauc gu uacgaguuug  ggcaccac g  u
auc         -  g          ua        - ua 

>mml-mir-122a (-40.00)   [mml-miR-122a:15-36]

c     c  -      GG       C           --u  c 
 cuuag ag agcugU  AGUGUGA AAUGGUGUUUG   gu u
 ||||| || ||||||  ||||||| |||||||||||   ||  
 ggauc uc ucgaua  ucacacu uuaccgcaaac   ca a
c     a  a      aa       a           uau  a 

>mml-mir-124a-2 (-35.92)   [mml-miR-124a:52-73]

a      uc   cc        a   ga        uaaau 
 ggccuc  ucu  guguucac gcg  ccuugauu     g
 ||||||  |||  |||||||| |||  ||||||||     u
 ucgggg  aga  CGUAAGUG CGC  GGAAUUaa     c
g      ua   AC        G   AC        cauac 

>mml-mir-125a (-47.10)   [mml-miR-125a-5p:15-38] [mml-miR-125a-3p:53-74]

u     u u ug  UC  UG   C    UA        ----  a 
 gccag c c  gg  CC  AGA CCUU  ACCUGUGA    gg c
 ||||| | |  ||  ||  ||| ||||  ||||||||    ||  
 cgguc g g  CC  GG  UCU GGAG  UGGACAcu    cc a
c     u c gu  GA  GU   U    --        ggga  u 

>mml-mir-126 (-36.50)   [mml-miR-126:52-73]

c    gu     - a           u       c cug   c 
 gcug  gaugg g cauuauuacuu ugguacg g   uga a
 ||||  ||||| | ||||||||||| ||||||| |   |||  
 cgac  cuguc C GUAAUAAUGAG GCCAUGC c   acu c
a    ac     G -           U       U -aa   u 

>mml-mir-128b (-39.40)   [mml-miR-128b:52-72]

u ug       a          aua      ac    g gag 
 g  caguggg aggggggccg   cacugu  gaga u   u
 |  ||||||| ||||||||||   ||||||  |||| |    
 u  gucaucc UUUCUCUGGC   GUGACA  CUcu g   a
c gu       c          CAA      --    g acg 

>mml-mir-129 (-29.40)   [mml-miR-129-5p:5-25] [mml-miR-129-3p:49-70]

    -       C   CU      G   uu cu  c 
ggau CUUUUUG GGU  GGGCUU Cug  c  cu a
|||| ||||||| |||  |||||| |||  |  ||  
ucUA GAAAAAC CCA  CCCGAA gac  g  ga a
    U       C   UU      g   -u au  c 

>mml-mir-130b (-37.10)   [mml-miR-130b:51-72]

      c    ca       cc         a  guggg  a 
ggccug ccga  cucuuuc  uguugcacu cu     cc c
|||||| ||||  |||||||  ||||||||| ||     ||  
cuggac ggcU  GGGAAAG  GUAACGUGA ga     gg u
      u    AC       UA         C  ----a  g 

>mml-mir-132 (-48.40)   [mml-miR-132:59-80]

c   cccc    -  c a    a         uuc          --gu g 
 cgc    gcgu cu c gggc accguggcu   gauuguuacu    g g
 |||    |||| || | |||| |||||||||   ||||||||||    |  
 gcg    cgca ga g cccG UGGUACCGA   CUGACAAUgg    c a
c   cacc    c  c c    C         CAU          aggu a 

>mml-mir-133c (-47.50)   [mml-miR-133c:59-80]

g  a    --     uuu    g       aa  u  a        g cug 
 gg gcca  aaugc   gcua agcuggu  aa gg accaaauc a   u
 || ||||  |||||   |||| |||||||  || || |||||||| |    
 cc cggu  uuacg   cgau UCGACCA  UU CC UGGUUUag u   c
g  g    ag     ugu    G       AC  C  C        g aac 

>mml-mir-133b (-49.30)   [mml-miR-133b:66-87]

c   a  a  --aa  --    --       c        ca  c  a      u  g      
 cuc ga ga    ga  ugcc  cccugcu uggcuggu  aa gg accaag cc ucuuc 
 ||| || ||    ||  ||||  ||||||| ||||||||  || || |||||| || |||| c
 gag uu cu    cu  acgg  gggacga AUCGACCA  UU CC UGGUUU gg agagu 
a   g  c  gacc  ua    uc       c        AC  C  C      -  -      

>mml-mir-134 (-34.90)   [mml-miR-134:8-29]

c     gU        U  -A   G    Gcgu  a 
 agggu  GUGACUGG UG  CCA AGGG    gc c
 |||||  |||||||| ||  ||| ||||    || u
 uccca  cacugauc ac  ggu uccc    ug g
c     ac        c  cg   g    -acu  u 

>mml-mir-135a-1 (-44.72)   [mml-miR-135a:17-39]

a g         u u          UU            uucua 
 g ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
 | ||||||||| | ||||||||||  ||||||||||||     u
 c ggggcggca g ggugccgagg  uagggauauacu     g
a a         c c          -u            cacuc 

>mml-mir-135b (-47.20)   [mml-miR-135b:16-38]

-------ca    -                   CAU          --   cu 
         cucu gcuguggccUAUGGCUUUU   UCCUAUGUGA  uug  g
         |||| |||||||||||||||||||   ||||||||||  |||   
         ggga ugacaucggguaccgaaaa   gggauguacu  aac  u
ccucgagcg    g                   -uc          ca   cc 

>mml-mir-136 (-48.10)   [mml-miR-136:20-42]

uug   -        g        C     UUU          uuc 
   gau gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
   ||| |||||||| |||||||| |||||   ||||||||||   u
   cua cuugggag cuucugag uaaac   gcuacuaccu   a
-ua   u        a        -     ucu          cgu 

>mml-mir-137 (-49.10)   [mml-miR-137:59-81]

g u  u   --           ug   g           ug a     -  g 
 g cc cug  acucucuucgg  acg guauucuuggg  g uaaua cg a
 | || |||  |||||||||||  ||| |||||||||||  | ||||| || u
 c gg gac  ugagaggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
a -  c   ca           GA   G           GU -     u  a 

>mml-mir-138 (-36.00)   [mml-miR-138:10-32]

c u   u  AG             UCA     -ac   c  cg 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg ug  gaccacagcacuu   ucggc   uuc uc  a
a u   u  -g             -ua     cca   -  cu 

>mml-mir-139 (-34.90)   [mml-miR-139-5p:7-28] [mml-miR-139-3p:44-65]

gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUCCAGu u  c
   ||||||| ||| || |||||||||||| |  u
   aUGAGGU GUC CG GCGCAGAGGucg a  c
-ca       U   C  -            g gg 

>mml-mir-140 (-55.00)   [mml-miR-140-5p:23-44] [mml-miR-140-3p:62-82]

u       ucucu        -  A             A       uu   uc 
 gugucuc     guguccug cC GUGGUUUUACCCU UGGUAGg  acg  a
 |||||||     |||||||| || ||||||||||||| |||||||  |||   
 cacgggg     cauaggac GG CACCAAGAUGGGA ACCAUcu  ugu  u
c       ----c        a  -             C       --   cg 

>mml-mir-142 (-44.70)   [mml-miR-142-5p:16-36] [mml-miR-142-3p:52-74]

g        g   c           A         Uaa ag a 
 acagugca uca cCAUAAAGUAG AAGCACUAC   c  c c
 |||||||| ||| ||||||||||| |||||||||   |  |  
 ugucaugu agu GGUAUUUCAUC UUUGUGAUG   g  g u
g        g   A           C         -Ug ga g 

>mml-mir-143 (-51.90)   [mml-miR-143:61-81]

-gc    c  cgug    c ag      g         g      u  -  ag 
   gcag gc    ucuc c  ccugag ugcagugcu caucuc gg uc  u
   |||| ||    |||| |  |||||| ||||||||| |||||| || ||   
   cguc ug    agag g  ggaCUC AUGUCACGA GUAGAG cu ag  u
cga    u  uuga    a aa      G         A      U  g  gg 

>mml-mir-144 (-44.40)   [mml-miR-144:52-71]

-u   -    u      g        a         -a    gu 
  ggg gccc ggcugg auaucauc uauacugua  guuu  g
  ||| |||| |||||| |||||||| |||||||||  ||||   
  ccc cggg cugaUC UGUAGUAG AUAUGACAU  caga  a
cc   a    c      A        -         ca    gu 

>mml-mir-146a (-38.70)   [mml-miR-146a:21-42]

-----ccuaugu      u     uU            C        g  uc 
            guaucc cagcu  GAGAACUGAAUU CAUGGGUU ug  a
            |||||| |||||  |||||||||||| |||||||| ||  g
            uauagg gucga  uucuugacuuaa guguccag ac  u
ugcugcugucuc      -     -c            a        -  ug 

>mml-mir-146b (-37.10)   [mml-miR-146b-5p:9-30] [mml-miR-146b-3p:45-66]

  u      G        AU        CU  ga  u 
cc ggcacU AGAACUGA  UCCAUAGG  gu  gc c
|| |||||| ||||||||  ||||||||  ||  ||  
gg ccguGG UCUUGACU  AGGUGUCC  Ua  cg u
  c      -        -C        CG  -a  a 

>mml-mir-147a (-17.45)   [mml-miR-147a:47-68]

-aaucuaa    aa      ug     acaccagac 
        agaa  cauuuc  cacac         u
        ||||  ||||||  |||||          
        UCUU  GUAAAG  GUGUG         a
uuacAUCG    -C      GU     accgaaguu 

>mml-mir-147b (-30.40)   [mml-miR-147b:49-69]

--  u    c   ug   a            aacuagauu      
  ua aaau uag  gaa cauuuccgcaca         cugga 
  || |||| |||  ||| ||||||||||||         |||| c
  au uuua gUC  CUU GUGAAGGCGUGU         Gacca 
gg  u    c   GU   C            ---------      

>mml-mir-148a (-28.20)   [mml-miR-148a:44-65]

              -  -a    cc    -   ag 
gaggcaaaguucug ag  cacu  gacu cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 

>mml-mir-148b (-35.00)   [mml-miR-148b:63-84]

caagcac  uu   a       ug         u  a    ca    gugg u 
       ga  agc uuugagg  aaguucugu au cacu  ggcu    c c
       ||  ||| |||||||  ||||||||| || ||||  ||||    | u
       cu  ucg aagcucU  UUCAAGACA UA GUGA  CUga    g c
-----au  -u   a       GU         C  C    --    --aa u 

>mml-mir-149 (-53.80)   [mml-miR-149:15-37]

g     -    a   U U G      G     A     g g   g 
 ccggc gccc agc C G CUCCGU UCUUC CUCCC u uuu u
 ||||| |||| ||| | | |||||| ||||| ||||| | |||  
 ggccg cggg ucg g c ggggca ggagg gaggg a gag c
a     a    g   u u g      g     -     - g   c 

>mml-mir-150 (-57.50)   [mml-miR-150:16-37]

c      u  -            AC   U       U -   g 
 ucccca gg cccugUCUCCCA  CCU GUACCAG G cug g
 |||||| || ||||||||||||  ||| ||||||| | |||  
 aggggu cc gggacagggggu  gga caugguc c gac c
c      -  a            cc   -       c a   u 

>mml-mir-151 (-46.20)   [mml-miR-151-5p:11-31] [mml-miR-151-3p:47-67]

---------------u      c            CA          u ucu 
                uuccug ccUCGAGGAGCU  CAGUCUAGUa g   c
                |||||| ||||||||||||  |||||||||| |    
                agggac GGAGUUCCUCGA  GUCAGAUCau c   a
cuccacucauacuggu      a            -A          c ccu 

>mml-mir-152 (-48.20)   [mml-miR-152:54-74]

u    cc  c              g  a    cc    cgg   c 
 gucc  cc ggcccagguucugu au cacu  gacu   gcu u
 ||||  || |||||||||||||| || ||||  ||||   |||  
 cagg  gg ccgGGUUCAAGACA UA GUGA  CUga   cga g
c    aa  c              G  C    --    ---   g 

>mml-mir-154 (-36.80)   [mml-miR-154:15-36]

ga      u            U      UGCC    - uuu 
  gguacu gaagaUAGGUUA CCGUGU    UUCG c   a
  |||||| |||||||||||| ||||||    |||| |   u
  ccauga uuuuuauccagu ggcaca    aagc g   u
aa      c            u      uacu    a ugu 

>mml-mir-155 (-29.92)   [mml-miR-155:4-26]

             U    A        uuuac 
cugUUAAUGCUAA CGUG UAGGGGUu     c
||||||||||||| |||| ||||||||     u
gacaauuacgauu guac auccucag     c
             -    -        ucaac 

>mml-mir-181b-2 (-34.70)   [mml-miR-181b:16-39]

cuga   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUU ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     guaaguagc  uagucacucaa cu  g
acaa   a     caaac         --           -  aa 

>mml-mir-181d (-69.30)   [mml-miR-181d:36-58]

      --      -     ----aca   aa       aucA         G UG          guga  a c 
gucccc  uccccu aggcc       gcc  ggucaca    ACAUUCAUU U  UCGGUGGGUu    gg c g
||||||  |||||| |||||       |||  |||||||    ||||||||| |  ||||||||||    || |  
cagggg  agggga uucgg       cgg  ucggugu    uguaaguag g  ggccacccag    cc g a
      ua      a     cacagac   -g       -cac         g --          ---a  - g 

>mml-mir-184 (-40.20)   [mml-miR-184:53-74]

        g c         c      a c     -     g 
ucagucac u cccuuauca uuuucc g ccagc uuuau a
|||||||| | ||||||||| |||||| | ||||| |||||  
aguuagug a GGGAAUAGU AAGAGG C GGUug gaaug c
        g U         C      - A     u     u 

>mml-mir-185 (-52.40)   [mml-miR-185:15-36]

a   c c       UG   A     G          u  uc 
 ggg g gagggau  GAG GAAAG CAGUUCCUGA gg  c
 ||| | |||||||  ||| ||||| |||||||||| ||   
 ccc c cuuccug  cuc cuuuc gucggggacu cc  c
a   u c       gu   -     g          -  uc 

>mml-mir-186 (-38.64)   [mml-miR-186:15-36]

u     u          AG     U     U      ucuggu 
 gcuug aacuuucCAA  AAUUC CCUUU GGGCUu      u
 ||||| ||||||||||  ||||| ||||| ||||||       
 cgagu uugaaggguu  uuaag ggaaa cccgaa      u
u     -          cu     u     -      uuuuau 

>mml-mir-187 (-46.60)   [mml-miR-187:71-92]

ggucaggcucacuaugacacagugugaga    g    a           - -c   ug ug 
                             ccuc ggcu caacacaggac c  ggg  c  c
                             |||| |||| ||||||||||| |  |||  |   
                             ggaG CCGA GUUGUGUUCUG G  ccc  g  u
---------------acgccuggacgcag    G    C           U CU   ca uc 

>mml-mir-190b (-31.40)   [mml-miR-190b:11-31]

-u   u     -U               G     -   aa 
  gcu cugug  GAUAUGUUUGAUAUU GGUUg uuu  u
  ||| |||||  ||||||||||||||| ||||| |||   
  cga gacau  uuauacaaacuguaa ucaac aag  u
gu   c     uc               a     c   ga 

>mml-mir-191 (-49.00)   [mml-miR-191:16-38]

c   u   c      CA         C  AA       uu  -  c 
 ggc gga agcggg  ACGGAAUCC AA  GCAGCUG  gu cu c
 ||| ||| ||||||  ||||||||| ||  |||||||  || ||  
 ccg ccu ucgucc  ugcuuuagg uu  cgucgac  ua ga a
u   u   c      cc         -  cg       cu  c  g 

>mml-mir-192 (-42.99)   [mml-miR-192:24-44]

    a -acc   u  --   g g  C         -     A       ugcucuc 
gcug g    gag gc  aca g cu UGACCUAUG AAUUG CAGCCag       g
|||| |    ||| ||  ||| | || ||||||||| ||||| |||||||        
cgac c    cuc cg  ugu u ga acuggauac uuaac gucgguc       u
    - guaa   -  cu   a g  c         c     c       uccccuc 

>mml-mir-193a (-53.60)   [mml-miR-193a-5p:18-39] [mml-miR-193a-3p:52-73]

ggau   a             U     CG   G  A   gggu 
    ggg gcugagggcUGGG CUUUG  GGC AG UGA    g
    ||| ||||||||||||| |||||  ||| || |||     
    ccc cggcuccUGACCC GAAAC  CCG UC Acu    u
---g   c             U     AU   G  A   aggc 

>mml-mir-193b (-43.10)   [mml-miR-193b:51-72]

   gu       u    gu         g  a  ag uua 
gug  cucagaa cggg  uuugagggc ag ug  u   u
|||  ||||||| ||||  ||||||||| || ||  |   g
uac  ggguuuU GCCC  AAACUCCCG UC Ac  a   u
   ug       C    UG         G  A  cu uuu 

>mml-mir-194-2 (-51.00)   [mml-miR-194:15-36]

-u     c      cU         A      G     -gu u 
  ggcuc cgcccc  GUAACAGCA CUCCAU UGGAa   g c
  ||||| ||||||  ||||||||| |||||| |||||   |  
  ccggg gcgggg  uauugucgu ggggug accuu   c c
gg     a      uc         c      -     agu a 

>mml-mir-195 (-47.50)   [mml-miR-195:15-35]

a   u     g  cU          -A          --cag g 
 gcu cccug cu  AGCAGCACAG  AAUAUUGGCa     g a
 ||| ||||| ||  ||||||||||  ||||||||||     |  
 ugg gggac ga  ucgucguguc  uuauaaccgu     c a
g   u     g  cc          gg          cugaa g 

>mml-mir-196a-2 (-51.20)   [mml-miR-196a:25-45]

-ug    - -uc       --c                  A          a ug   
   cucg c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGg u  ag 
   |||| |   |||||||   |||||||||||||||||| |||||||||| |  | u
   gagc g   uuggcug   acauugaguccgucaaag acaacggcuc a  uu 
cgg    u cuu       acu                  a          a gu   

>mml-mir-196b (-27.50)   [mml-miR-196b:15-36]

acugguc     uuU       U  C           ucca 
       gguga   AGGUAGU UC UGUUGUUGGGa    c
       |||||   ||||||| || |||||||||||     
       uuacu   uccguca ag acgacagcucu    c
------a     ---       c  c           cuuu 

>mml-mir-197 (-42.40)   [mml-miR-197:48-69]

        c    a       ca    ga   -   a 
ggcugugc gggu gagaggg  gugg  ggu aag g
|||||||| |||| |||||||  ||||  ||| |||  
ccgguaCG CCCA CUCUUCC  CACU  cca uuc c
        A    C       AC    Uc   c   u 

>mml-mir-199a-2 (-29.20)   [mml-miR-199a-5p:6-28] [mml-miR-199a-3p:47-68]

   aaC       U        C   U  g ag c 
gcc   CCAGUGU CAGACUAC UGU Ca g  g u
|||   ||||||| |||||||| ||| || |  |  
cgg   GGUUACA GUCUGAUG ACA gu c  c c
   AUU       C        -   u  g aa u 

>mml-mir-200a (-46.40)   [mml-miR-200a:54-75]

cc   - c   g        -            -----------     a 
  ggg c ccu ugagcauc uuaccggacagu           gcugg u
  ||| | ||| |||||||| ||||||||||||           ||||| u
  ccc g gga acuUGUAG AAUGGUCUGUCA           cgacc u
ca   a u   a        C            CAAUcucaguu     c 

>mml-mir-203 (-55.60)   [mml-miR-203:65-86]

g     gg acuc  g         c         u    g    a     - ug 
 ugcug  g    gc cgcuggguc agugguucu aaca uuca caguu c  u
 |||||  |    || ||||||||| ||||||||| |||| |||| ||||| |   
 gcgac  c    cg gcggcccaG UCACCAGGA UUGU AAGU Guuaa g  a
a     ag ggca  g         A         U    A    -     c cg 

>mml-mir-204 (-42.26)   [mml-miR-204:33-54]

ggcuacagucuuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acuug agggaaacgg agggu cgga      a
--------------c   c  u    uua     c          a     -    ggaagu 

>mml-mir-205 (-47.92)   [mml-miR-205:34-55]

aaagaucc    gcaa       gcuu      UC           C        ucuca 
        ucag    uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        ||||    |||||||    ||||||  ||||||||||| ||||||||     a
        aguc    agguacg    gaggac  gaagugaggug cuuuagac     c
------gc    ---g       ----      uu           a        caacc 

>mml-mir-206 (-43.90)   [mml-miR-206:53-74]

u    c                        cc     u g uu 
 gcuu ccgaggccacaugcuucuuuauau  ccaua g a  a
 |||| ||||||||||||||||||||||||  ||||| | |   
 ugaa ggcuuuGGUGUGUGAAGGAAUGUA  GGUau c u  c
g    c                        -A     - g uu 

>mml-mir-208a (-31.10)   [mml-miR-208a:44-65]

u   ag          g  c  gg      c  a 
 gac  gcgagcuuuu gc cg  uuauac ug u
 |||  |||||||||| || ||  |||||| || g
 cug  UGUUCGAAAA CG GC  AAUAug ac c
a   gu          A  A  AG      c  u 

>mml-mir-208b (-31.30)   [mml-miR-208b:46-67]

--c        g          c   aa        cu 
   cucucagg aagcuuuuug ucg  uuauguuu  g
   |||||||| |||||||||| |||  ||||||||  a
   gggagucU UUUGGAAAAC AGC  AAUAuaag  u
gac        G          A   AG        cc 

>mml-mir-210 (-55.00)   [mml-miR-210:66-87]

accc  ca  - cc           gg     c   cc   -      c  c -     
    gg  gu c  uccaggcgcag  cagcc cug  cac cgcaca ug g cugc 
    ||  || |  |||||||||||  ||||| |||  ||| |||||| || | ||| c
    cc  cg g  ggguccguguc  GUCGG GAC  GUG GCGUGU ac c gacc 
---c  ag  c ac           uA     C   -A   U      C  c a     

>mml-mir-212 (-54.60)   [mml-miR-212:71-91]

cggggcaccccgcccgga   c   c   -ca        cu      c      ccc     
                  cag gcg cgg   ccuuggcu  agacug uuacug   gggc 
                  ||| ||| |||   ||||||||  |||||| ||||||   ||| c
                  guc cgc gcc   GGGACUGA  UCUGAC AAUgac   cccg 
----------ccgccccg   -   a   aCC        CC      -      --u     

>mml-mir-216a (-40.20)   [mml-miR-216a:19-40]

---------------gaug   g  ag     u         CU   A        ---a   u 
                   gcu ug  uuggc UAAUCUCAG  GGC ACUGUGAg    ugu c
                   ||| ||  ||||| |||||||||  ||| ||||||||    |||  
                   cga ac  aaucg auuaggguc  cug ugacacuc    aca a
agcgcucccguuccuuuaa   g  -a     c         -u   g        ccua   u 

>mml-mir-216b (-32.60)   [mml-miR-216b:11-32]

--g       gaA         A  --CAAA      g  ac 
   cagacug   AAUCUCUGC GG      UGUGAu uc  u
   |||||||   ||||||||| ||      |||||| ||   
   gucugac   uuagagaug cc      acacua ag  g
aca       auc         c  auucac      a  aa 

>mml-mir-217 (-31.90)   [mml-miR-217:35-57]

aauauaauuauuacaua    uu     c c  a UC     C          U -   aag 
                 guuu  gaugu g ag U  UGCAU AGGAACUGAU G GAu   a
                 ||||  ||||| | || |  ||||| |||||||||| | |||    
                 caaa  cuacg c uc g  acgua uccuugacua c cug   a
--------------gaa    -u     a u  c uu     a          c a   acu 

>mml-mir-218-1 (-41.80)   [mml-miR-218:20-40]

-----aau  a   a   u      U         CU        gg    gag 
        gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
        || ||| ||| |||||| |||||||||  ||||||||  ||||   u
        cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
acaucuuu  a   a   c      c         cc        -a    agu 

>mml-mir-219-2 (-49.90)   [mml-miR-219-5p:19-39] [mml-miR-219-3p:62-83]

a   a       c     U   U     AA           uac a  c 
 cuc ggggcuu gccac GAU GUCCA  CGCAAUUCUug   g gu u
 ||| ||||||| ||||| ||| |||||  |||||||||||   | || g
 ggg ccucgag cggUG CUA CAGGU  GUGUUAAGAgc   c cg c
-   -       u     U   -     CG           caa -  g 

>mml-mir-220b (-45.20)   [mml-miR-220b:23-43]

-ga     uggcg    -   - c   ACC        --C        g    agg 
   cagcg     uugu agg g uCC   ACCGUGUC   GACACCUu ggcg   g
   |||||     |||| ||| | |||   ||||||||   |||||||| ||||   c
   gucgu     ggcg ucc c agg   uggcguag   uuguggaa ucgc   a
gua     -ucua    c   u a   gcc        uac        g    agu 

>mml-mir-220c (-34.71)   [mml-miR-220c:23-44]

gacag    gcauugu    --c   ACC        -   -      g    -a g 
     cgug       aggg   uCC   ACUGUGUC UGA CACCUU ggcg  g g
     ||||       ||||   |||   |||||||| ||| |||||| ||||  |  
     gcac       uccu   agg   uggcguag acu guggaa ucgc  c c
-----    -------    cau   -cc        u   u      g    ag a 

>mml-mir-220d (-38.90)   [mml-miR-220d:17-38]

--------guggcguuguagggcuCCACC        -   -      g    agg 
                             ACCGUGUC UGA CACCUU ggug   g
                             |||||||| ||| |||||| ||||   c
                             uggcguag acu guggaa ucgc   a
guagucguucuaggcccuucucauggguc        u   u      g    agu 

>mml-mir-222 (-50.40)   [mml-miR-222:69-89]

gcu          auaggua  c   au              -     auc   ucuu 
   gcuggaaggu       cc uca  ggcucaguagccag uguag   cug    u
   ||||||||||       || |||  |||||||||||||| |||||   |||    c
   cgaucuucua       gg agu  cUGGGUCAUCGGUC ACAUC   gac    g
--u          ------c  u   cu              U     GAc   uaau 

>mml-mir-296 (-41.40)   [mml-miR-296-5p:14-34] [mml-miR-296-3p:48-69]

  ga      ca       C  C         G   ugc 
ag  cccuuc  gAGGGCC CC CUCAAUCCU Uug   c
||  ||||||  ||||||| || ||||||||| |||   u
uc  gggaag  CUCUCGG GG GGGUUGGGA Gac   a
  uc      uC       A  U         -   uua 

>mml-mir-297 (-28.10)   [mml-miR-297:4-23]

u u       U       -              u 
 g AUGUAUG GUGCAUG UGCAUauaugugug g
 | ||||||| ||||||| ||||||||||||||  
 c uauauac cauguau auguauauauauau u
a -       u       u              a 

>mml-mir-298 (-33.10)   [mml-miR-298:11-34]

---   gg    c      --   C  G      UC -    g uu 
   uca  ucuu AGCAGA  AGC GG UGGUUC  C CAgu g  u
   |||  |||| ||||||  ||| || ||||||  | |||| |  u
   agu  agga ucguuu  ucg cc aucaag  g guca u  c
ucg   -a    c      ug   u  g      ga u    g uc 

>mml-mir-299 (-42.30)   [mml-miR-299-5p:7-28] [mml-miR-299-3p:39-60]

     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  c
uucUU GCCAAAUGGCAGGGUGUAUgua  a
     C                      ua 

>mml-mir-301a (-32.80)   [mml-miR-301a:51-73]

a     aa  a     c    ---u          ----a       
 cugcu  cg augcu ugac    uuauugcacu     cuguac 
 |||||  || ||||| ||||    ||||||||||     ||||| u
 gacga  gu uaCGA ACUG    GAUAACGUGA     gacauu 
g     aa  c     A    UUAU          Cgauc       

>mml-mir-301b (-32.80)   [mml-miR-301b:44-66]

----  g        c      ---g        a  gug u 
    cc caggugcu ugacga    guugcacu cu   c c
    || |||||||| ||||||    |||||||| ||   | u
    gg gucuaCGA ACUGUU    UAACGUGA ga   g g
acca  -        A      AUAG        C  --a a 

>mml-mir-302a (-33.40)   [mml-miR-302a:44-66]

   c    u         u           gaa 
cca cacu aaacgugga guacuugcuuu   a
||| |||| ||||||||| |||||||||||   c
ggu GUGG UUUGUACCU CGUGAAUgaag   u
   A    U         U           aaa 

>mml-mir-302b (-28.84)   [mml-miR-302b:50-72]

     cuuca   uu          ug   u  gugacu 
gcucc     acu  aacauggaag  cuu cu      u
|||||     |||  ||||||||||  ||| ||       
ugagG     UGA  UUGUACCUUC  GAA ga      u
     ----A   UU          GU   U  auaaaa 

>mml-mir-302c (-32.00)   [mml-miR-302c:43-65]

    ug  uu             c    -g  u 
ccuu  cu  aacauggggguac ugcu  ug g
||||  ||  ||||||||||||| ||||  || a
ggaG  GA  UUGUACCUUCGUG AUga  ac a
    GU  CU             A    aa  a 

>mml-mir-302d (-30.40)   [mml-miR-302d:44-66]

  u u    u                -cug  gu 
cc c acuu aacauggaggcacuug    ug  a
|| | |||| ||||||||||||||||    ||   
gg G UGAG UUGUACCUUCGUGAAU    ac  u
  U -    U                aaaa  ag 

>mml-mir-320 (-44.60)   [mml-miR-320:48-69]

g     c   -ccuc         uu       c      g 
 cuucg ucc     cgccuucuc  cccgguu uucccg a
 ||||| |||     |||||||||  ||||||| ||||||  
 ggagu agg     GCGGGAGAG  GGGUCGA AAgggc g
-     -   aaaaA         UU       A      u 

>mml-mir-323 (-37.70)   [mml-miR-323-5p:16-37] [mml-miR-323-3p:51-71]

---uu      u g        G U     GCGC  U    uua 
     gguacu g agagAGGU G CCGUG    GU CGCu   u
     |||||| | |||||||| | |||||    || ||||    
     cuauga c uuUCUCCA C GGCAC    CA gcgg   u
cuaau      - g        G U     AUUA  C    uau 

>mml-mir-324 (-38.60)   [mml-miR-324-5p:16-38] [mml-miR-324-3p:53-72]

cu      gc     C   U C   A     U   U  aaag 
  gacuau  cuccc GCA C CCU GGGCA UGG GU    c
  ||||||  ||||| ||| | ||| ||||| ||| ||     
  cugaug  gggGG CGU G GGA CCCGU Acc ca    u
--      uu     U   C U   C     C   -  gagg 

>mml-mir-325 (-32.10)   [mml-miR-325:16-38]

----------au             CC   U    G C      GU Uu guu 
            gcagugcuugguu  UAG AGGU U CAGUAA  G  u   a
            |||||||||||||  ||| |||| | ||||||  |  |    
            ugucacgaacuaa  auc ucca g guuauu  u  a   c
ggucucggaucg             cu   c    g a      ug uu aua 

>mml-mir-329-1 (-34.40)   [mml-miR-329:52-73]

g      cu           uu ug   uuc      u  aa 
 ugguac  gaagggagguu  c  ggu   uguuuc uu  u
 ||||||  |||||||||||  |  |||   |||||| ||   
 acuaug  cuUUUCUCCAA  G  CCA   ACAAag ag  g
a      ac           UU GU   --C      u  ga 

>mml-mir-329-2 (-31.80)   [mml-miR-329:50-71]

     cu           uu ug   cuc      u  ac 
gguac  gaagggagguu  c  ggu   uguuuc uu  u
|||||  |||||||||||  |  |||   |||||| ||   
cuaug  cuUUUCUCCAA  G  CCA   ACAAag ag  g
     ac           UU GU   --C      u  ga 

>mml-mir-330 (-46.52)   [mml-miR-330-5p:18-39] [mml-miR-330-3p:57-79]

cuuu   -  u a           --    -    U   AG    ugcaa 
    ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ccg cu g gacggAGAGAC  CCGG ACAC GAA  CGag     u
---c   u  c c           GU    C    -   -A    ccaac 

>mml-mir-331 (-43.52)   [mml-miR-331-5p:26-47] [mml-miR-331-3p:61-81]

gaguuugguuuu         u        U    U       AU Ccaga 
            guuuggguu guuCUAGG AUGG CCCAGGG  C     u
            ||||||||| |||||||| |||| |||||||  |     c
            caaauccaa cAAGAUCC UAUC GGGUCCC  g     a
----------cu         c        -    C       CG accaa 

>mml-mir-335 (-39.70)   [mml-miR-335:10-32]

--------------   c        A         C        U  gu 
              gag gggggUCA GAGCAAUAA GAAAAAUG uu  c
              ||| |||||||| ||||||||| |||||||| ||   
              cuc ccuccagu cucguuauu cuuuuugc aa  a
acuuauaucguuua   u        c         a        c  au 

>mml-mir-337 (-40.30)   [mml-miR-337-5p:23-43] [mml-miR-337-3p:61-82]

guagucagua uu         -   C   U     C        -   ca 
          g  ggggggugg GAA GGC UCAUA AGGAGUUg aug  c
          |  ||||||||| ||| ||| ||||| |||||||| |||   
          c  uccccuaCU CUU CCG AGUAU UCCUCgac uau  a
--------aa -u         U   U   U     A        c   ug 

>mml-mir-338 (-28.50)   [mml-miR-338-5p:6-27] [mml-miR-338-3p:42-63]

   c      U   -         -   G  ga 
ucu cAACAA AUC CUGGUGCUG AGU au  c
||| |||||| ||| ||||||||| ||| ||  u
aga GUUGUU UAG GACUACGAC Uca ug  c
   a      U   U         C   g  ga 

>mml-mir-339 (-51.40)   [mml-miR-339-5p:15-37] [mml-miR-339-3p:50-72]

----------c       c    cU C     C  C   A       u  g 
           ggggcgg cgcu  C CUGUC UC AGG GCUCACG gu c
           ||||||| ||||  | ||||| || ||| ||||||| ||  
           ccccgcc gcgG  G GACAG AG UCC CGAGUgu cg c
cgcgucuguga       c    CC A     C  C   G       c  u 

>mml-mir-340 (-36.00)   [mml-miR-340:16-37]

--uu     u      aU       -CAA      U    g     ug 
    guacc ggugug  UAUAAAG    UGAGAC GAUU ucaua  u
    ||||| ||||||  |||||||    |||||| |||| |||||  u
    uaugg ccauac  auauuuc    acucug cuag ggugu  g
auuc     u      cg       auug      c    -     uu 

>mml-mir-342 (-47.70)   [mml-miR-342-5p:19-39] [mml-miR-342-3p:61-83]

gaaac     u        G      --UA      AUUGA      ugg  a 
     ugggc caaggugA GGGUGC    UCUGUG     gggaca   uu a
     ||||| |||||||| ||||||    ||||||     ||||||   ||  
     auccg guuccacU CCCACG    AGACAC     CUCUgu   ag u
-auuc     -        G      CUAA      ----A      -ua  g 

>mml-mir-345 (-36.70)   [mml-miR-345:14-35]

-------      u     gG U  CU   A  CA        ug u 
       aaaccc agguc  C GA  CCU GU  AGGGCUCg  g g
       |||||| |||||  | ||  ||| ||  ||||||||  |  
       uuuggg uccgg  g cu  gga ca  ucccgggu  u g
cuauaag      -     ag u  ug   g  ag        gg c 

>mml-mir-346 (-39.00)   [mml-miR-346:4-26]

------   UG       --  AUGCCUGCCUCUcuguugcucuga 
      guc  UCUGCCC  GC                        a
      |||  |||||||  ||                         
      cgg  agacggg  cg                        g
cguccu   cg       uc  ucgacguccgggucggggacggag 

>mml-mir-361 (-32.30)   [mml-miR-361-5p:6-27] [mml-miR-361-3p:45-67]

     UU         --U  A    U     auaa 
ggagc  AUCAGAAUC   CC GGGG ACuuu    u
|||||  |||||||||   || |||| |||||     
cuucg  UAGUCUUAG   GG CCCC Ugaaa    u
     UU         UGU  A    C     aacu 

>mml-mir-362 (-30.30)   [mml-miR-362-5p:5-28] [mml-miR-362-3p:42-63]

cuc           ACC        -A Ug  a 
   gAAUCCUUGGA   UAGGUGUG  G  cu u
   |||||||||||   ||||||||  |  || u
   CUUAGGAACUU   AUCCACAC  c  ga u
aaA           ---        AA gu  c 

>mml-mir-363 (-25.00)   [mml-miR-363:50-71]

u   gu         ca  a         --ga   gu 
 guu  cggguggau  cg ugcaauuuu    uua  a
 |||  |||||||||  || |||||||||    |||   
 caa  GUCUACCUA  GC ACGUUAAaa    gau  u
c   AU         UG  -         agag   ac 

>mml-mir-365-1 (-35.40)   [mml-miR-365:56-77]

acc      aa        ac           ----   -   uuu 
   gcaggg  aaugaggg  uuuugggggca    gau gug   c
   ||||||  ||||||||  |||||||||||    ||| |||   c
   cguucu  uUAUUCCU  AAAAUCCCCGU    cua cac   a
--a      cg        -A           AAUa   u   cuu 

>mml-mir-365-2 (-40.10)   [mml-miR-365:68-89]

agaguguucaa g   --       a        ac   c       -----    u   u 
           g aca  gcaagaa aaugaggg  uuu aggggca     gcug guu u
           | |||  ||||||| ||||||||  ||| |||||||     |||| |||  
           c ugu  cguucuu uUAUUCCU  AAA UCCCCGU     ugac cag c
-----ggacua g   ga       g        AA   -       AAUac    u   u 

>mml-mir-367 (-26.20)   [mml-miR-367:44-65]

   c            ua     c   --g   a 
cca uacuguugcuaa  ugcaa ucu   uug a
||| ||||||||||||  ||||| |||   |||  
ggu GUGGUAACGAUU  ACGUU Agg   aac c
   A            UC     A   uua   a 

>mml-mir-369 (-29.30)   [mml-miR-369-5p:9-30] [mml-miR-369-3p:44-64]

u   ag               UA      Cuuua 
 uga  ggAGAUCGACCGUGU  UAUUCG     u
 |||  |||||||||||||||  ||||||      
 acu  UUUCUAGUUGGUACA  AUAAgc     u
g   cu               UA      uucag 

>mml-mir-370 (-34.60)   [mml-miR-370:48-69]

      agaa       ca gu   u    u   a  g 
agacag    gccaggu  c  cuc gcag uac ca c
||||||    |||||||  |  ||| |||| ||| || u
ucuguc    UGGUCCA  G  GGG CGUC Gug gu c
      ----       AG UG   U    C   a  a 

>mml-mir-371 (-35.30)   [mml-miR-371-5p:6-25] [mml-miR-371-3p:45-67]

            CU    G        cug u u 
guggcACUCAAA  GUGG GGCACUuu   c c c
||||||||||||  |||| ||||||||   | |  
cauUGUGAGUUU  UACC CCGUGAAa   g g u
            UG    G        aaa u g 

>mml-mir-372 (-28.90)   [mml-miR-372:42-64]

     c         g -      a    gaug 
gugau cucaaaugu g agcacu uucu    u
||||| ||||||||| | |||||| ||||    c
cacUG GAGUUUACA C UCGUGA AAgg    c
     C         G G      -    ugaa 

>mml-mir-373 (-39.32)   [mml-miR-373:44-66]

         -     g         u   uuuug 
gggauaccc aaaau ggagcacuu ccc     u
||||||||| ||||| ||||||||| |||     c
cccUGUGGG UUUUA CUUCGUGAA Ggg     u
         G     G         -   ucgug 

>mml-mir-374a (-35.20)   [mml-miR-374a:12-33]

     c   c            C           u 
uacau ggc aUUAUAAUACAA CUGAUAAGUGu a
||||| ||| |||||||||||| |||||||||||  
augug cug uaauguuauguu gacuauucacg c
     u   u            a           a 

>mml-mir-374b (-41.40)   [mml-miR-374b:11-32]

--  u    ug AU                     c 
  ac cgga  g  AUAAUACAACCUGCUAAGUGu c
  || ||||  |  |||||||||||||||||||||  
  ug gccu  u  uauuauguuggacgauucacg u
uc  u    gu ac                     a 

>mml-mir-375 (-26.20)   [mml-miR-375:40-61]

c  -    a      ccu  c     c  gac 
 cc cgcg cgagcc   cg acaaa cg   c
 || |||| ||||||   || ||||| ||    
 gg GUGC GCUCGG   GC UGUUU gc   u
c  A    -      CUU  U     u  gag 

>mml-mir-376a-1 (-18.20)   [mml-miR-376a:44-64]

u    g  a    c    u      --gua   u 
 aaaa gu gauu uccu cuauga     cau a
 |||| || |||| |||| ||||||     ||| u
 uuuU CA CUAA AGGA GAUACU     gua u
c    G  C    A    -      Aauua   u 

>mml-mir-376a-2 (-28.20)   [mml-miR-376a:50-70]

      u    g  a         u         --   g 
gguauu aaaa gu gauuuuccu cuaugguua  cgu u
|||||| |||| || ||||||||| |||||||||  ||| u
cuauga uuuU CA CUAAAAGGA GAUACUAau  gua u
      c    G  C         -         ug   g 

>mml-mir-376b (-34.00)   [mml-miR-376b:62-83]

    ccuuc         u           a     u     uuuacg    u 
cagu     uuugguauu aaaacguggau uuccu cuaug      ugau c
||||     ||||||||| ||||||||||| ||||| |||||      |||| c
gucg     aaacuauga uuUUGUACCUA AAGGA GAUAC      auug u
    ----u         c           A     -     ----UA    g 

>mml-mir-376c (-24.02)   [mml-miR-376c:43-63]

    g     ua     u         uguua 
aaaa gugga  uuccu cuauguuua     u
|||| |||||  ||||| |||||||||     u
uuuU CACCU  AAGGA GAUACAAau     u
    G     UA     -         uggua 

>mml-mir-377 (-27.80)   [mml-miR-377:45-66]

uu              c   -    a    - uuu 
  gagcagagguugcc uug guga uucg c   a
  |||||||||||||| ||| |||| |||| |   u
  uuUGUUUUCAACGG AAC CACU Aagu g   u
-g              A   A    -    u uau 

>mml-mir-378 (-39.20)   [mml-miR-378:43-63]

   g  c              ugu      ccu 
agg cu cugacuccaggucc   guguua   c
||| || ||||||||||||||   ||||||    
ucc GA GACUGAGGUUCAGG   CAcgau   g
   G  A              --U      aaa 

>mml-mir-379 (-27.40)   [mml-miR-379:6-26]

    a    A       GA       -  uu u 
agag UGGU GACUAUG  ACGUAGG cg  a g
|||| |||| |||||||  ||||||| ||  |  
ucuc auca cugguac  uguaucc gu  u a
    a    c       aa       a  uu u 

>mml-mir-380 (-24.40)   [mml-miR-380:40-61]

      guu       ga       c   c 
aagaug   gaccaua  acaugcg uau u
||||||   |||||||  ||||||| |||  
UUCUGC   CUGGUAU  UGUAUgc gug c
      -AC       AA       u   u 

>mml-mir-381 (-35.00)   [mml-miR-381:49-70]

      a  c   g        u        --g   u 
uacuua ag gag uugcccuu guauauuc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   cag u
      G  U   G        -        gua   u 

>mml-mir-382 (-28.50)   [mml-miR-382:11-32]

    u       -A           UG      - uuu 
uacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuuuuuu  caacaggcacu  cuaagc g   u
    -       ca           ua      a uau 

>mml-mir-383 (-27.30)   [mml-miR-383:7-28]

   -c  A      AA    A        uug   gga 
cuc  uc GAUCAG  GGUG UUGUGGCU   ggu   u
|||  || ||||||  |||| ||||||||   |||    
gag  ag cugguc  ucac gacaccga   cua   a
   aa  a      cg    -        ---   auu 

>mml-mir-384 (-23.60)   [mml-miR-384:57-76]

uguuaaauuaggaauuguaaacaauuccua    a    u     g   a  a a 
                              ggca uaug auaau uuc ua g c
                              |||| |||| ||||| ||| || | A
                              ccgu AUAC UGUUA AAG AU C U
-----------------------acaaugu    a    U     -   -  C U 

>mml-mir-409 (-38.30)   [mml-miR-409-5p:15-37] [mml-miR-409-3p:47-68]

u     u  gg   A    AC         -    - AUc 
 gguac cg  gag GGUU  CCGAGCAAC UUUG C   u
 ||||| ||  ||| ||||  ||||||||| |||| |    
 cuaug gc  uUC CCAA  GGCUCGUUG AAGc g   g
a     -  uu   C    GU         U    a cag 

>mml-mir-410 (-36.30)   [mml-miR-410:50-70]

     c      g    ug      a  a     - uuuu 
gguac ugagga aggu  ucugug ug guucg c    a
||||| |||||| ||||  |||||| || ||||| |     
ccaug acuuuU UCCG  AGACAC AU UAAgc g    u
     -      G    GU      A  A     a uaau 

>mml-mir-411 (-30.00)   [mml-miR-411:16-36]

u      ug   a a    A      A A       - uuu 
 gguacu  gag g UAGU GACCGU U GCGUACG c   a
 ||||||  ||| | |||| |||||| | ||||||| |   u
 cuauga  cuc c auca cuggca a uguaugc g   c
a      --   c a    c      c a       a ugu 

>mml-mir-412 (-34.70)   [mml-miR-412:54-76]

----cug      gg      a    c      u   aa    -    u 
       ggguac  ggaugg uggu gaccag ugg  agua auug u
       ||||||  |||||| |||| |||||| |||  |||| ||||  
       ccuaug  ccUGCC AUCA CUGGUC ACU  UCAu uaau u
gacgucg      --      G    C      C   --    g    c 

>mml-mir-421 (-33.90)   [mml-miR-421:47-69]

    uu      -    uua            a   aaa 
caca  guaggc cuca   aauguuuguuga uga   a
||||  |||||| ||||   |||||||||||| |||   a
gugu  cgucCG GGGU   UUACAGACAACU Acu   u
    cu      C    UAA            -   aag 

>mml-mir-422a (-33.60)   [mml-miR-422a:10-31]

-----   a  ---a  AC   A       U  G A     ga    c c 
     gag ga    gc  UGG CUCAGGG CA A GGCcu  gucu c u
     ||| ||    ||  ||| ||||||| || | |||||  |||| | g
     cuc cu    cg  acc gaguccc gu u ucggg  uaga g c
ggucc   -  guuc  -a   -       u  g g     --    c u 

>mml-mir-423 (-48.80)   [mml-miR-423-5p:17-39] [mml-miR-423-3p:53-75]

-----auaa       u            -AG   G    A     cua 
         aggaagu aggcUGAGGGGC   AGA CGAG CUUUu   u
         ||||||| ||||||||||||   ||| |||| |||||   u
         uccuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
cgcgcccca       u            GAG   G    -     ccu 

>mml-mir-424 (-42.30)   [mml-miR-424:11-32]

---------------------       a  C      AA             g   u 
                     cgagggg ua AGCAGC  UUCAUGUUUUGAA ugu c
                     ||||||| || ||||||  ||||||||||||| ||| u
                     gcucccc au ucgucg  gagugcaaaacuu gua a
gggguggaagauggaaggggu       c  a      cg             g   a 

>mml-mir-425 (-35.70)   [mml-miR-425:14-36]

     c  u    AAU       U  C     U  A  -----  g 
gaaag gc uugg   GACACGA CA UCCCG UG gu     gg c
||||| || ||||   ||||||| || ||||| || ||     ||  
cuuuc cg gacc   cugugcu gu agggc ac cg     cc c
     u  u    cgc       -  a     u  -  aagag  c 

>mml-mir-429 (-36.40)   [mml-miR-429:51-72]

c    g c    ag  -uc          cg       cugg 
 gccg c gaug  cg   uuaccagaca  guuagac    c
 |||| | ||||  ||   ||||||||||  |||||||     
 cggc g cuac  GC   AAUGGUCUGU  UAAUcug    u
-    - c    cU  CAA          CA       ucuc 

>mml-mir-431 (-43.60)   [mml-miR-431:20-40]

---------------ucc  c     c       U          C  U A     ----   aca 
                  ug uuguc ugcgagg GUCUUGCAGG CG C UGCAg    gcc   c
                  || ||||| ||||||| |||||||||| || | |||||    |||    
                  ac agcag acgcucu cgggacguuc gc g acguu    ugg   u
gcagcaaccacuacuccu  -     a       u          u  u g     gcaa   cag 

>mml-mir-432 (-38.40)   [mml-miR-432:14-36]

u  -  c     u U U     UA       G     a   u uauu 
 ga cu cucca g C UGGAG  GGUCAUU GGUGG ucc c    u
 || || ||||| | | |||||  ||||||| ||||| ||| |    c
 cu ga gaggu c g accuc  ucgguag ucacc ggg g    c
a  a  u     u u u     -c       g     -   u uauu 

>mml-mir-433 (-37.00)   [mml-miR-433:64-85]

ccag      gua   u           u   --------  g     cu 
    ggagaa   cgg gagccugucau auu        ca agagg  a
    ||||||   ||| ||||||||||| |||        || |||||   
    ccucuU   GCU CUCGGGUAGUA UAg        gu ucucc  g
-gga      GUG   C           C   gaagaguu  g     ua 

>mml-mir-448 (-51.40)   [mml-miR-448:71-92]

-----------  c       u a            g   u     ga au    a  uc 
           gc gggaggu g acauccugcaua ugc gccag  a  cccu uu  a
           || ||||||| | |||||||||||| ||| |||||  |  |||| ||  u
           cg cccucUA C UGUAGGAUGUAU ACG Ugguc  u  ggga aa  a
acugcuucauc  a       C C            -   U     gg cg    g  uc 

>mml-mir-449a (-39.70)   [mml-miR-449a:16-37]

-c      ug     c       -    U          ugaa   g 
  ugugug  augag UGGCAGU GUAU GUUAGCUGGU    uau u
  ||||||  ||||| ||||||| |||| ||||||||||    |||  
  auauac  uauuc gucguca cgua caaucgacua    gua g
ac      gu     u       a    -          --cg   a 

>mml-mir-449b (-36.40)   [mml-miR-449b:16-37]

---------uga  u   u     A     U   UU   A C        u  gu 
            cc gaa caggu GGCAG GUA  GUU G UGGCugcu ga  c
            || ||| ||||| ||||| |||  ||| | |||||||| ||   
            gg cuu guuca ccguc cau  caa c accgacga cu  a
ucuucuuaaaua  u   c     -     c   --   - -        -  ga 

>mml-mir-450a-1 (-36.20)   [mml-miR-450a:18-39]

--aaa      u      uU U     U               ac 
     ugauac aaacug  U UGCGA GUGUUCCUAAUAUgu  u
     |||||| ||||||  | ||||| |||||||||||||||  a
     acuaug uuugau  g acguu uacaaggguuauaua  u
auaua      u      gu u     u               aa 

>mml-mir-450a-2 (-35.40)   [mml-miR-450a:23-44]

-ccaaagaaa     u       UUU     U               aa 
          gaugc aaacuau   UGCGA GUGUUCCUAAUAUgu  u
          ||||| |||||||   ||||| |||||||||||||||  a
          cuaug uuugaua   acguu uacagggguuaugua  u
gguauaauaa     u       cuu     u               aa 

>mml-mir-450b (-26.70)   [mml-miR-450b-5p:11-32] [mml-miR-450b-3p:48-69]

--          UUU     U   U    G       ag 
  gcagaauuau   UGCAA AUG UCCU AAUAugu  u
  ||||||||||   ||||| ||| |||| |||||||  a
  uguuuugAUA   ACGUU UAC AGGG UUaugcg  u
ua          CCU     U   U    -       aa 

>mml-mir-451 (-40.50)   [mml-miR-451:17-38]

c     a        gA    G            A 
 uuggg auggcaag  AACC UUACCAUUACUG G
 ||||| ||||||||  |||| ||||||||||||  
 gaccu uaucguuc  uugg aaugguaaugau U
a     a        uc    g            U 

>mml-mir-452 (-40.90)   [mml-miR-452:14-35]

  u          AAC G        G  A        uuug 
gc aagcacuuac   U UUUGCAGA GA ACUGAgac    u
|| ||||||||||   | |||||||| || ||||||||    a
cg uucgugaaug   a aaacgucu cu ugacucug    a
  u          --a g        a  c        uauc 

>mml-mir-453 (-24.00)   [mml-miR-453:44-66]

   ----g     c       agugccaccucaugguacuc 
gca     gaaug ugugagc                    g
|||     ||||| |||||||                     
cgu     uuuau ACGCUUG                    g
   aguaa     u       AGUGGUGCCUGUUGGAggga 

>mml-mir-454 (-43.60)   [mml-miR-454:64-86]

-------uc     a  a     uc            ---         ----   --u     g 
         uguuu uc ccaga  cuagaacccuau   caauauugu    cuc   gcugu u
         ||||| || |||||  ||||||||||||   |||||||||    |||   |||||  
         acaag ag gguuu  gguuuUGGGAUA   GUUAUAACG    gag   ugaua a
ggacgggua     a  -     gu            UUC         UGAU   ucu     a 

>mml-mir-455 (-41.60)   [mml-miR-455-5p:16-37] [mml-miR-455-3p:54-74]

----ucccu   -g     -----          U      A   C   gaa 
         ggc  ugagg     gUAUGUGCCU UGGACU CAU Gug   g
         |||  |||||     |||||||||| |||||| ||| |||    
         ccg  acucc     CAUAUACGGG ACCUGA Gua cac   c
cuacuguau   ga     guuCA          U      C   c   gac 

>mml-mir-484 (-28.80)   [mml-miR-484:2-23]

      CUCA   C       AU   -c    a 
gUCAGG    GUC CCUCCCG  aaa  cccu a
||||||    ||| |||||||  |||  ||||  
cggucc    cag ggggggc  uuu  ggga a
      ----   u       cc   ca    u 

>mml-mir-485 (-34.40)   [mml-miR-485-5p:9-30] [mml-miR-485-3p:46-67]

   ug        CU       -    A    auuc 
acu  gagAGAGG  GGCCGUG AUGA UUCg    a
|||  ||||||||  ||||||| |||| ||||    u
uga  uUCUCUCC  UCGGCAC UACU Gagc    c
   uu        UC       A    -    gaaa 

>mml-mir-486 (-53.00)   [mml-miR-486-5p:4-25] [mml-miR-486-3p:46-66]

                         -  ggg a 
guaUCCUGUACUGAGCUGCCCCGAG cu   c g
||||||||||||||||||||||||| ||   | c
cgUAGGACAUGACUCGACGGGGCuc gg   g a
                         c  gaa u 

>mml-mir-487a (-29.90)   [mml-miR-487a:49-70]

      ug    g   uca      c    -    - uuu 
gguacu  gaga ugg   ucccug ugug uucg c   g
||||||  |||| |||   |||||| |||| |||| |   u
cuauga  uuUU ACC   AGGGAC AUAC AAgc g   u
      cu    G   UAC      -    U    a uau 

>mml-mir-487b (-34.80)   [mml-miR-487b:51-72]

u       ug        uuau      c u     uuuug 
 ugguacu  gagagugg    cccugu c guucg     c
 |||||||  ||||||||    |||||| | |||||      
 acuauga  uuUUCACC    GGGACA G UAAgc     u
a       cu        UACU      U C     ugugc 

>mml-mir-488 (-33.00)   [mml-miR-488:52-72]

    a      cu  c   u      a  c        g u 
gaga ucaucu  cc aga aauggc cu ucaaacaa u u
|||| ||||||  || ||| |||||| || |||||||| | c
cucu aguaga  GG UCU UUAUCG GA AGUUuguu a c
    c      CU  U   -      -  A        g a 

>mml-mir-489 (-35.20)   [mml-miR-489:52-73]

       c     g            gc c    ua     a 
guggcag uuggu gucguaugugug  g cauu  cuuga c
||||||| ||||| ||||||||||||  | ||||  |||||  
cauuguc aauCG CGGCAUAUACAC  C GUGa  ggauu c
       a     A            UA A    --     u 

>mml-mir-490 (-54.40)   [mml-miR-490-5p:39-58] [mml-miR-490-3p:76-97]

u     -cc      g    -   aguucauu        C      --         G   caa   u 
 ggagg   uugcug uuug gaa        guucgaca CAUGGA  UCUCCAGGU GGU   guu a
 |||||   |||||| |||| |||        |||||||| ||||||  ||||||||| |||   |||  
 ccuuc   ggcgac gaac cuu        cgaguuGU GUACCU  GGAGGUCCA Cca   uag g
a     aca      -    a   ------gu        C      CA         A   -cg   a 

>mml-mir-491 (-49.40)   [mml-miR-491-5p:16-37] [mml-miR-491-3p:50-71]

 ug       ug     U      CC   C          a 
u  acuuagc  gguAG GGGGAA  CUU CAUGAGGagu g
|  |||||||  ||||| ||||||  ||| |||||||||| a
g  ugggucg  cCAUC UCCCUU  GAA GUAUUCcuca a
 gu       gu     U      -A   C          c 

>mml-mir-492 (-37.49)   [mml-miR-492:28-50]

--a  a      cuacu   a accuucgAG  C           GAU      u ccg  a 
   cu cagcca     aca g         GA CUGCGGGACAA   UCUUgg g   uc a
   || ||||||     ||| |         || |||||||||||   |||||| |   || u
   ga gucggu     ugu c         cu gacguccuguu   aggacc c   ag g
gua  c      ----c   c --guaacaa  a           ---      u --a  a 

>mml-mir-493 (-47.70)   [mml-miR-493:57-78]

     cuc        u                    cauuc  u 
cuggc   cagggcuu guacaugguaggcuuucauu     gu u
|||||   |||||||| ||||||||||||||||||||     ||  
gaccg   gucccGGA CGUGUGUCAUCUGGAAGUgg     ca g
     --u        C                    -cuua  c 

>mml-mir-494 (-36.60)   [mml-miR-494:48-69]

      c            gu      -   c   -  uuu 
gauacu gaaggagagguu  ccgugu ugu uuc uc   a
|||||| ||||||||||||  |||||| ||| ||| ||   u
cuauga uuucuuCUCCAA  GGCACA ACA AAG ag   u
      -            AG      U   -   U  uau 

>mml-mir-495 (-35.60)   [mml-miR-495:50-71]

u      u          u  -       au     - uuu 
 gguacc gaaaagaagu gc ccauguu  uuucg c   a
 |||||| |||||||||| || |||||||  ||||| |   u
 cuaugg uuuUUCUUCA CG GGUACAA  AAAgc g   a
a      c          -  U       AC     a ugu 

>mml-mir-496 (-42.80)   [mml-miR-496:56-77]

      -----uca     u    u        u     gu         uua 
cccgag        gguac cgaa ggagguug ccaug  guguucauu   u
||||||        ||||| |||| |||||||| |||||  |||||||||    
ggguuc        ucaug gcuu cCUCUAAC GGUAC  UAUGAGUag   u
      uucuuaac     -    u        C     AU         uau 

>mml-mir-497 (-55.50)   [mml-miR-497:24-44]

  a cc    -   g         - -----    G    C         U  --   ac 
cc c  cggu ccu cucccgccc C     AGCA CACA UGUGGUUUG ac  ggc  u
|| |  |||| ||| ||||||||| |     |||| |||| ||||||||| ||  |||   
gg g  gcca gga ggggguggg g     uugu gugu acaccaaac ug  ccg  g
  a cc    c   -         a cgaga    g    c         c  ca   gu 

>mml-mir-498 (-60.90)   [mml-miR-498:34-56]

aaucc        -aag  aag            -         -A     C       ugug 
     uccuuggg    ug   cucaggcuguga UUUCAAGCC  GGGGG GUUUUUC    a
     ||||||||    ||   |||||||||||| |||||||||  ||||| |||||||    c
     aggaaucu    ac   gaguuugacacu gaaguucgg  ccucc cgaaaag    u
-uuga        acua  -ga            c         gg     a       uagg 

>mml-mir-499 (-62.62)   [mml-miR-499-5p:32-52] [mml-miR-499-3p:69-90]

         --- c    cuu       c   u  UA        A          acucc 
gcccugucc   c gugu   gggcggg agc gU  AGACUUGC GUGAUGUUUa     u
|||||||||   | ||||   ||||||| ||| ||  |||||||| ||||||||||     c
ugggacggg   g cgca   ccugccc ucg CG  UCUGAACG CACUACAAgu     u
         ucc u    -uc       u   U  UG        A          gcacc 

>mml-mir-500 (-38.70)   [mml-miR-500:13-35]

    c c     -U         UAC UG    AGAg   uau 
gcuc c cucuc  AAUCCUUGC   C  GGUG    ugc   c
|||| | |||||  |||||||||   |  ||||    |||   u
cgag g gagag  uuaggaacg   g  ccac    acg   g
    a c     uc         --- gu    -gua   uaa 

>mml-mir-501 (-43.50)   [mml-miR-501:14-35]

    u       -u       UGUC        AG g   uuu 
gcuc uccucuc  AAUCCUU    CCUGGGUG  A ugc   c
|||| |||||||  |||||||    ||||||||  | |||   u
cgag gggagag  uuaggaa    ggacccac  u acg   g
    u       uc       ---c        -g g   uaa 

>mml-mir-502 (-44.60)   [mml-miR-502-5p:10-30] [mml-miR-502-3p:46-67]

------        -         UAU UG     UAg   ugu 
      cccucucu aAUCCUUGC   C  GGUGC   ugc   c
      |||||||| |||||||||   |  |||||   |||   u
      gggagagA UUAGGAACG   G  CCACG   Acg   c
ucgagg        C         --- GU     -UA   uaa 

>mml-mir-503 (-40.50)   [mml-miR-503:6-28]

      A              U  G   -----   g 
ugcccU GCAGCGGGAACAGU CU CAG     uga u
|||||| |||||||||||||| || |||     |||  
auggga cgucgccuuuguua ga guc     acu g
      c              u  g   ucaug   a 

>mml-mir-504 (-48.40)   [mml-miR-504:13-34]

   -g    -            G     A    -A  u   u 
gcu  cugu ugggAGACCCUG UCUGC CUCU  UC gua u
|||  |||| |||||||||||| ||||| ||||  || |||  
cgg  gaca acccuuugggac ggacg gagg  ag cau c
   ga    u            g     c    ga  u   u 

>mml-mir-505 (-44.90)   [mml-miR-505:51-72]

     ac    u           g    a        ucug 
gaugc  ccag gggggagccag aagu uugauguu    c
|||||  |||| ||||||||||| |||| ||||||||    c
cuacg  gguc cUCCUUUGGUC UUCA AACUGCga    a
     -a    u           G    C        uuug 

>mml-mir-511-1 (-34.80)   [mml-miR-511:17-36]

    a   a    cc            CU   G   g    ua 
caau gac ccca  uUGUCUUUUGCU  GCA UCA uaaa  u
|||| ||| ||||  ||||||||||||  ||| ||| ||||   
guua cug gggu  gacagaaaacga  ugu agu guuu  u
    c   g    aa            ug   a   -    uu 

>mml-mir-511-2 (-34.80)   [mml-miR-511:17-36]

    a   a    cc            CU   G   g    ua 
caau gac ccca  uUGUCUUUUGCU  GCA UCA uaaa  u
|||| ||| ||||  ||||||||||||  ||| ||| ||||   
guua cug gggu  gacagaaaacga  ugu agu guuu  u
    c   g    aa            ug   a   -    uu 

>mml-mir-512-1 (-33.80)   [mml-miR-512-5p:14-36] [mml-miR-512-3p:51-72]

u    c  ug   CA      CUC  G         uggug 
 cuca uc  ugg  CUCAGC   GG GGCACUUUC     u
 |||| ||  |||  ||||||   || |||||||||      
 gagu ag  acC  GAGUCG   CU UCGUGAAag     c
g    c  ua   UA      UUA  G         uaaga 

>mml-mir-512-2 (-36.90)   [mml-miR-512-5p:20-42] [mml-miR-512-3p:57-78]

   a   --    c  ug   CA      CUC  G         uggug 
ggu cuu  cuca uc  ugg  CUCAGC   GG GGCACUUUC     u
||| |||  |||| ||  |||  ||||||   || |||||||||      
cca gag  gagu ag  acC  GAGUCG   CU UCGUGAAag     c
   c   cg    c  ua   UA      UUA  G         uaaga 

>mml-mir-514-2 (-29.70)   [mml-miR-514:54-74]

gu    -   gg   c      -    g    a      u  aua 
  uguc ugu  uac cuacuc ugga agug caauca gu   a
  |||| |||  ||| |||||| |||| |||| |||||| ||    
  acag acg  aug GAUGAG GUCU UCAC GUUAgu ua   u
-c    u   ua   A      U    -    A      u  aau 

>mml-mir-516a-1 (-49.60)   [mml-miR-516a-5p:16-37] [mml-miR-516a-3p:60-77]

               GU    A    A            guug  u 
ucucaggcugugacc  CUCG GGAA GAAGCACUUUcu    uc a
|||||||||||||||  |||| |||| ||||||||||||    ||  
agaguuuggcauUGG  GAGC CCUU CUUUGUgaagga    ag a
               --    -    C            --aa  a 

>mml-mir-516a-2 (-49.60)   [mml-miR-516a-5p:16-37] [mml-miR-516a-3p:60-77]

               GU    A    A            guug  u 
ucucaggcugugacc  CUCG GGAA GAAGCACUUUcu    uc a
|||||||||||||||  |||| |||| ||||||||||||    ||  
agaguuuggcauUGG  GAGC CCUU CUUUGUgaagga    ag a
               --    -    C            --aa  a 

>mml-mir-517a (-36.40)   [mml-miR-517a:53-74]

-    u  a     c       u   a    u    gugg  u 
 cuca gc gugac cucuaga gga gcac gucu    uc a
 |||| || ||||| ||||||| ||| |||| ||||    || a
 gagu ug cauUG GAGAUUU CCU CGUG UAga    ag a
a    u  c     U       U   A    C    --aa  a 

>mml-mir-517b (-28.30)   [mml-miR-517b:46-67]

     c       u   a    u    gugg  u 
gugac cucuaga gga gcac gucu    uc a
||||| ||||||| ||| |||| ||||    || a
caUUG GAGAUUU CCU CGUG Uaga    ag a
     U       U   A    C    --aa  a 

>mml-mir-518a (-48.40)   [mml-miR-518a-5p:16-35] [mml-miR-518a-3p:53-73]

     u          UA           C      -g    c 
ucuca gcugugaccC  CAAAGGGAAGC CUUUCu  uugu u
||||| ||||||||||  ||||||||||| ||||||  ||||  
agagu uggcauugGG  GUUUCUCUUCG GAAAGa  agca a
     u          UC           U      aa    a 

>mml-mir-518b (-37.80)   [mml-miR-518b:51-71]

           c    c      a   a   uc    g  u 
ucaggcuguga ccuc agaggg agc cuu  uguu uc g
||||||||||| |||| |||||| ||| |||  |||| || a
aguuuggcauu GGAG UUUCCC UCG GAA  ACga ag a
           a    A      C   C   --    a  a 

>mml-mir-518c (-53.40)   [mml-miR-518c:62-84]

gcgagaaga     u                           uc    g  u 
         uuuca gcugugacucucuggagggaagcgcuu  uguu uc g
         ||||| |||||||||||||||||||||||||||  |||| || a
         agagu uggcauUGAGAGAUUUCUCUUCGCGAA  ACaa ag a
----cgaaa     u                           --    a  a 

>mml-mir-518d (-49.60)   [mml-miR-518d:50-70]

---  u                           uc    g  u 
   ca gcugugacucucuggagggaagcgcuu  uguu uc g
   || |||||||||||||||||||||||||||  |||| || a
   gu uggcauugAGAGAUUUCUCUUCGCGAA  ACaa ag a
aga  u                           --    a  a 

>mml-mir-518e (-41.90)   [mml-miR-518e:54-75]

        u     c            g  a     guga  u 
ucucaggc gugac cucuagagggaa cg uuucu    uc g
|||||||| ||||| |||||||||||| || |||||    || a
agaguuug cauUG GAGAUUUCCCUU GU AAAga    ag a
        u     U            G  A     --aa  a 

>mml-mir-518f (-41.40)   [mml-miR-518f:54-74]

       cu    c     ag        a    --a    gu 
ucucagg  guga ccucu  agggaagc cuuu   ucuu  g
|||||||  |||| |||||  |||||||| ||||   ||||  u
agaguuu  cauu GGAGA  UCCCUUCG GAAA   agga  g
       cu    A     CU        C    gaa    aa 

>mml-mir-519a (-56.30)   [mml-miR-519a:53-77]

       u                           gugg  u 
cucaggc gugacccucuagagggaagcgcuuucu    uc g
||||||| |||||||||||||||||||||||||||    || a
gaguuug CAUUGGGAGAUUUUCCUUCGUGAAAga    ag a
       c                           --aa  a 

>mml-mir-519b (-41.80)   [mml-miR-519b:51-73]

caugcu                 a    u    guug  u 
      gugacccucuggaggga gcgc uucu    uc g
      ||||||||||||||||| |||| ||||    || a
      caUUGGGAGAUUUCCCU CGUG AAga    ag a
guuucu                 A    C    --aa  a 

>mml-mir-519c (-42.80)   [mml-miR-519c:54-75]

      u      c         g  a         guug   g 
ucucag cuguga ccucuagaa ga gcacuuucu    uuu a
|||||| |||||| ||||||||| || |||||||||    |||  
agaguu gacauU GGAGAUUUU CU CGUGAAAga    aag a
      u      A         A  A         ---a   a 

>mml-mir-519d (-45.40)   [mml-miR-519d:57-78]

        u  g  c   c               cug   g  gu 
ucccaagc gu ac cuc aaagggaagcacuuu   uuu uu  c
|||||||| || || ||| |||||||||||||||   ||| ||   
aggguucg ca uG GAG UUUUCCUUCGUGAAA   aaa ag  u
        c  g  U   A               -Ca   g  ag 

>mml-mir-520a (-46.30)   [mml-miR-520a:53-74]

         u   cc                    guug  u 
cucaggcug gac  uccagagggaaguauuuucu    uc g
||||||||| |||  ||||||||||||||||||||    || a
gaguuuggc uUG  AGGUUUCCCUUCGUGAAAga    ag a
         u   UC                    --aa  g 

>mml-mir-520b (-39.80)   [mml-miR-520b:41-61]

                       gugg  u 
cccucuagagggaagcgcuuucu    uc g
|||||||||||||||||||||||    || a
GGGAGAUUUUCCUUCGUGAAAga    ag a
                       --aa  a 

>mml-mir-520c (-58.20)   [mml-miR-520c:54-76]

        u                           gugg  u 
ucucaggc gugacccucuagagggaagcgcuuucu    uc g
|||||||| |||||||||||||||||||||||||||    || a
agaguuug caUUGGGAGAUUUUCCUUCGUGAAAga    ag a
        c                           --aa  a 

>mml-mir-520d (-48.40)   [mml-miR-520d-5p:16-35] [mml-miR-520d-3p:54-75]

     u          UA           C      -g    c 
ucuca gcugugaccC  CAAAGGGAAGC CUUUCu  uugu u
||||| ||||||||||  ||||||||||| ||||||  ||||  
agagu uggcauUGGG  GUUUCUCUUCG GAAAga  agca a
     u          UC           U      aa    a 

>mml-mir-520e (-48.20)   [mml-miR-520e:48-68]

------  u                           gugg  u 
      gc gugacccucuagagggaagcgcuuucu    uc g
      || |||||||||||||||||||||||||||    || a
      ug cauuGGGAGAUUUUCCUUCGUGAAAga    ag a
agaguu  c                           --aa  a 

>mml-mir-520f (-58.20)   [mml-miR-520f:55-76]

        u                           gugg  u 
ucucaggc gugacccucuagagggaagcgcuuucu    uc g
|||||||| |||||||||||||||||||||||||||    || a
agaguuug caUUGGGAGAUUUUCCUUCGUGAAaga    ag a
        c                           --aa  a 

>mml-mir-520g (-34.20)   [mml-miR-520g:55-78]

     u  u  g  c    ag  -a        uc     guug  u 
uccca gc gu gc cucu  ag  aagcacuu  uguuu    uc g
||||| || || || ||||  ||  ||||||||  |||||    ||  
agggu ug cg UG GAGA  UC  UUCGUGAA  ACAaa    ag a
     u  u  g  U    CU  CC        --     ---a  g 

>mml-mir-520h (-26.80)   [mml-miR-520h:56-77]

ucccaagcugug  c   c               cug   g  gu 
            ac cuc aaagggaagcacuuu   uuu uu  c
            || ||| |||||||||||||||   ||| ||   
            ug GAG UUUUCCUUCGUGAAA   aaa ag  u
-----------g  U   A               -CA   g  ag 

>mml-mir-521 (-42.60)   [mml-miR-521:54-75]

     u  u     c              a u    guug  u 
ucuca gc gugac cuccaaagggaagu c uucu    uc a
||||| || ||||| |||||||||||||| | ||||    || a
agagu ug cauUG GAGGUUUCCCUUCA G AAga    ag a
     u  c     U              C C    --aa  a 

>mml-mir-522 (-41.90)   [mml-miR-522:54-75]

        u     c            g  a     guga  u 
ucucaggc gugac cucuagagggaa cg uuucu    uc g
|||||||| ||||| |||||||||||| || |||||    || a
agaguuug cauUG GAGAUUUCCCUU GU AAAga    ag a
        u     U            G  A     --aa  a 

>mml-mir-523a (-52.80)   [mml-miR-523a:54-74]

       cu                    a u    guug  u 
ucucagg  gugacccucuagagggaagc c uucu    uc g
|||||||  |||||||||||||||||||| | ||||    || g
agagucu  cauuGGGAGAUUUCCCUUCG G AAga    ag a
       cu                    C U    --aa  a 

>mml-mir-523b (-44.70)   [mml-miR-523b:16-37]

     uga      c        C               ggcu 
ucuca   ugugac CUCUAGAG GAAGCGCUUUCUGuu    a
|||||   |||||| |||||||| |||||||||||||||    g
agagu   gcauug gagauuuc cuucgcgaaggauaa    a
     uuc      u        c               gaaa 

>mml-mir-523c-1 (-42.20)   [mml-miR-523c:51-71]

---  ugcu                 a    u    guug  u 
   ca    gugacccucuggaggga gcgc uucu    uc g
   ||    ||||||||||||||||| |||| ||||    || a
   gu    cauuGGGAGAUUUCCCU CGUG AAga    ag a
aga  uucu                 A    C    --aa  a 

>mml-mir-523c-2 (-43.50)   [mml-miR-523c:54-74]

---  c  ugcu                 a    u    guug  u 
   uc ca    gugacccucuggaggga gcgc uucu    uc g
   || ||    ||||||||||||||||| |||| ||||    || a
   ag gu    cauuGGGAGAUUUCCCU CGUG AAga    ag a
aga  a  uucu                 A    C    --aa  a 

>mml-mir-525 (-54.50)   [mml-miR-525:15-35]

             u              A         a gu 
cucaggcugugac CUCCAGAGGGAUGC CUUUCUuuu u  g
||||||||||||| |||||||||||||| ||||||||| |   
ggguuuggcauug gagguuucccuacg ggaagaaaa a  a
             c              c         a aa 

>mml-mir-532 (-18.62)   [mml-miR-532-5p:20-41] [mml-miR-532-3p:57-78]

cgacuugcuuucucuccuc  U      A    A   CC  uggca 
                   CA GCCUUG GUGU GGA  GU     u
                   || |||||| |||| |||  ||     c
                   GU CGGAAC CACA CCU  ca     u
-----------------AC  U      C    C   CC  uuaau 

>mml-mir-539 (-29.20)   [mml-miR-539:9-30]

     ug          A      G    -    - uuu 
auacu  aGGAGAAAUU UCCUUG UGUG Uucg c   a
|||||  |||||||||| |||||| |||| |||| |   u
uauga  uuuucuuuaa aggaac auac aagu g   u
     gu          c      -    u    a uau 

>mml-mir-542 (-34.30)   [mml-miR-542-5p:16-38] [mml-miR-542-3p:53-74]

----------cagac       auc    GG    UCA         -A   c 
               cucagac   UCGG  AUCA   UGUCACGAG  uac a
               |||||||   ||||  ||||   |||||||||  |||  
               gggucug   AGUC  UAGU   ACAGUGUuc  gug c
acuucuacuuaccga       gAA    AA    UAG         ac   u 

>mml-mir-544 (-32.60)   [mml-miR-544:55-76]

auuuu      cua    u           -     u   -ga  c 
     caucac   ggga cuuguuaaaaa gcaga ucu   uu a
     ||||||   |||| ||||||||||| ||||| |||   ||  
     guagug   cuCU GAACGAUUUUU CGUCU Aga   ag g
uaauc      -aa    U           A     U   acc  g 

>mml-mir-545 (-37.52)   [mml-miR-545:63-84]

cccag    ------g   a         - u            a  a     auaaa 
     ccug       cac uuaguaggc c caguaaauguuu uu gauga     u
     ||||       ||| ||||||||| | |||||||||||| || |||||     g
     ggac       gug aaucgucCG G GUUAUUUACAAA GA CUacu     a
-----    accucga   a         U U            C  -     cagua 

>mml-mir-548a (-26.20)   [mml-miR-548a:62-83]

---uc    gagguauuaag    u c            -   uuu   c     a 
     cagg           uugg g aaaaguaauugu ggu   uug cauua a
     ||||           |||| | |||||||||||| |||   ||| |||||  
     gucc           aacc C UUUUCAUUAACG UCA   AAC guaau a
uuaua    ----------a    u C            G   --U   a     g 

>mml-mir-548b (-47.10)   [mml-miR-548b:61-82]

caggcuau     u       ug               c  gg   uuuau 
        guauu agguugg  caaaaguaauugggg uu  gcc     u
        ||||| |||||||  ||||||||||||||| ||  |||      
        cauaa uccaacc  GUUUUCGUUAACUCC AA  Cgg     u
------uu     -       gU               A  AA   uaacu 

>mml-mir-548c (-36.00)   [mml-miR-548c:59-80]

uguga        g   a    a         -g     uu        a 
     uguauuag uug ugca aaguaauug  gguuu  ugucauua a
     |||||||| ||| |||| |||||||||  |||||  ||||||||  
     auauaauc aac aCGU UUCAUUAAC  CCAAA  ACagugau a
----a        a   c    C         GG     --        g 

>mml-mir-548d (-44.90)   [mml-miR-548d-5p:59-80] [mml-miR-548d-3p:61-82]

aaacaaguug      g            u          c     uauaa 
          uauuag uuggugcaaaag aauugugguu uugcc     a
          |||||| |||||||||||| |||||||||| |||||      
          auaauc aaccaCGUUUUC UUAACACCAA AACGG     a
-------gaa      a            U          A     uaaug 

>mml-mir-548e (-44.10)   [mml-miR-548e:61-82]

ccuagaa      uag                    ga     a     ac 
       uguuac   guuggugcaaaaguaauugc  guuuu ccauu  u
       ||||||   ||||||||||||||||||||  ||||| |||||   
       auaaug   caaccaCGUUUUCAUUGACG  CAAAA gguaa  u
----uuc      ---                    GC     C     cu 

>mml-mir-548f (-41.20)   [mml-miR-548f:52-72]

-auu                u     c  a   u       a 
    uagguuggugcaaaag aauug gg uuu gccauug a
    |||||||||||||||| ||||| || ||| |||||||  
    aucuaaccaCGUUUUC UUGAC CC AAA cgguaau a
agau                C     A  A   C       g 

>mml-mir-549 (-44.50)   [mml-miR-549:26-46]

agacaugcaacucaaga                             cu     
                 auauauugAGAGCUCAUCCAUAGUUGUCA  gucu 
                 |||||||||||||||||||||||||||||  ||| c
                 uauauaauucucgaguagguauuaacagu  uaga 
----------cggaccc                             ac     

>mml-mir-550 (-47.40)   [mml-miR-550:22-44]

ugaugcuuu   g     u cA               A AG C     gu 
         gcu gcugg g  GUGCCUGAGGGAGUA G  C Cuguu  u
         ||| ||||| |  ||||||||||||||| |  | |||||  g
         uga cgacc c  cacggacucccucau c  g gauag  u
---------   a     u ua               - cu u     aa 

>mml-mir-551a (-56.70)   [mml-miR-551a:61-81]

ggggacug  -   ug            c         ggg     ucuga 
        cc ggg  acccuggaaauc agagugggu   gccug     c
        || |||  |||||||||||| |||||||||   |||||      
        gg ccc  ugggACCUUUGG UCUCACCCA   CGgau     c
-----aaa  u   gu            U         --G     cuuua 

>mml-mir-551b (-40.70)   [mml-miR-551b:61-81]

agaugugc    c     ca          cg     - -aga    gug 
        ucuc uggcc  ugaaaucaag  ugggu g    ccug   c
        |||| |||||  ||||||||||  ||||| |    ||||    
        agag gucgg  ACUUUGGUUC  ACCCA C    ggac   a
-----aua    c     aG          AU     G Ggaa    aag 

>mml-mir-552 (-45.00)   [mml-miR-552:60-80]

accauuca                        uua       uguu    a 
        aauauaccacaguuuguuugacca   accuguu    gaag u
        ||||||||||||||||||||||||   |||||||    ||||  
        uuauauggugucaAACAGAUUGGU   UGGGCAA    uuuc g
------ac                        CAG       ---c    c 

>mml-mir-553 (-17.50)   [mml-miR-553:16-36]

     auuuua       AA           G  UU 
cuuca      uuugAAA  GGUGAGGUUUU UU  g
|||||      |||||||  ||||||||||| ||   
ggagu      agauuuu  ucacucuaaaa ag  u
     -----c       -g           g  uc 

>mml-mir-554 (-32.50)   [mml-miR-554:16-36]

-----a  u   uaaccuu      --------          --      acug 
      cc gag       uGCUAG        UCCUGACUCA  GCCAGU    a
      || |||       ||||||        ||||||||||  ||||||    u
      gg cuc       acgguu        gggacugggu  cgguca    c
ucuacg  u   --ucucu      uuauacuu          ga      cauu 

>mml-mir-556 (-21.90)   [mml-miR-556-5p:16-37] [mml-miR-556-3p:55-76]

gauaguaau         G A  C            ---  uuc 
         gagaaaGAU A CU AUUGUAAUAUGA   Gc   a
         ||||||||| | || ||||||||||||   ||   u
         uuuUUUCUA U GA UAACAUUAUAcu   cg   u
------uuu         G C  U            uua  uau 

>mml-mir-557 (-25.70)   [mml-miR-557:61-83]

agaaugggcaaaugaauaguaaa  ug    cc      c u   ugc   u    a 
                       uu  gagg  uggggc c ccc   ugc ggac a
                       ||  ||||  |||||| | |||   ||| ||||  
                       aa  uUCU  AUUCCG G GGG   ACG UCUG g
-------------agguggagga  gu    --      A U   --U   -    u 

>mml-mir-558 (-34.60)   [mml-miR-558:61-79]

gugugugu   u       uu        c          ua  cu     
        gug guuugug  uauuuugg auaguagcuc  ga  cuau 
        ||| |||||||  |||||||| ||||||||||  ||  ||| u
        cgu caaacac  aUAAAACC UGUCGUCGAG  cu  gaua 
-----guc   -       -c        A          Uc  uu     

>mml-mir-562 (-27.70)   [mml-miR-562:61-80]

agugaa      ---   ---u  u     -   u       -c      a  g 
      auugcu   ggg    ca auggu cag cuacuuu  agagua uu u
      ||||||   |||    || ||||| ||| |||||||  |||||| ||  
      uaacgg   ccc    GU UACCA GUC GAUGAAA  uuuuau aa g
------      ugu   uuaC  U     U   -       cu      g  a 

>mml-mir-563 (-28.20)   [mml-miR-563:52-70]

agcaaagaag  u      cucca             -  u       
          ug guugcc     ggaaauguguguu gc cugaug 
          || ||||||     ||||||||||||| || ||||| u
          ac cgaugg     CCUUUACAUACAG CG GAuuaa 
----------  -      ---uC             U  -       

>mml-mir-567 (-27.80)   [mml-miR-567:16-38]

--------ggauucuuacaggacACU            G      ---  u 
                          AUGUUCUUCCAG ACAGAA   Ca u
                          |||||||||||| ||||||   || c
                          uacaagaagguc uguuuu   gu u
ucguuauugaaaaaaauuucaaaacg            a      auc  u 

>mml-mir-568 (-31.60)   [mml-miR-568:15-34]

---        -     u        A         ACuucc       a 
   auauacac uauau AUGUAUAA UGUAUACAC      uauaugu u
   |||||||| ||||| |||||||| |||||||||      |||||||  
   uaugugug auaug uacauauu auauaugug      auauaca c
gua        g     -        -         --auau       c 

>mml-mir-569 (-23.60)   [mml-miR-569:61-81]

-    uu    ga        g     --       aacagcaucagca 
 ggua  guua  uuaauuuu uggga  cauuaac             g
 ||||  ||||  |||||||| |||||  |||||||              
 uuau  cagu  aauUGAAA GUCCU  GUAAUUG             c
u    uu    -g        G     AA       Auuucgacuacaa 

>mml-mir-570 (-43.20)   [mml-miR-570:51-72]

uauu             c        ag        a   c 
    agguuggugcaaa guaauugc  uuuuugcc uua u
    ||||||||||||| ||||||||  |||||||| |||  
    uccaaccaCGUUU CAUUAACG  GAAAACgg aau u
----             C        AU        a   u 

>mml-mir-572 (-53.90)   [mml-miR-572:61-80]

gucgaggccguggcccggaagugaucg          g  -    -a     c 
                           gggccgccgc ga cgga  gggcg c
                           |||||||||| || ||||  |||||  
                           CCCGGUGGCG CU GCCU  uucgu u
-----------agggcgcccggaccgA          G  C    Gc     c 

>mml-mir-573 (-23.80)   [mml-miR-573:16-39]

--uuuagagg g  u      AGUGAU       -CG     ga cu  u 
          u uc ccCUGA      GCAUAAC   AUCAG  u  ac c
          | || ||||||      |||||||   |||||  |  ||  
          g ag gggacu      uguauug   ugguu  a  ug a
guuuuggaga g  u      guucgu       aaa     uc ac  u 

>mml-mir-576 (-57.80)   [mml-miR-576-5p:16-37] [mml-miR-576-3p:55-76]

-----ua                       C            g   ua 
       caauccagugaggAUUCUAAUUU UCCACAUCUUUg uaa  a
       ||||||||||||||||||||||| |||||||||||| |||   
       guuagguuacucCUAAGGUUAAA AGGUGUAGAAac guu  g
aauauug                       A            g   uu 

>mml-mir-577 (-46.42)   [mml-miR-577:16-36]

-----------    gg                 A      U     augag 
           uggg  aaugaagagUAGAUAAA UAUUGG ACCUG     u
           ||||  ||||||||||||||||| |||||| |||||     g
           accc  uuacuucucgucuauuu auaacu uggac     u
cauucaucuau    uu                 c      u     cggag 

>mml-mir-578 (-47.10)   [mml-miR-578:60-80]

gauaa                      ug  c           ccu      
     auauauagacaaaauacaaucc  ga uauaagaagcu   auagc 
     ||||||||||||||||||||||  || |||||||||||   |||| u
     uauauauuuguuuuaUGUUAGG  CU GUGUUCUUCga   ugucc 
-----                      GU  C           ---      

>mml-mir-579 (-52.80)   [mml-miR-579:62-84]

cauauuag   a                               gc      aa 
        guu augcaaaaguaaucgcgguuugugccaaaug  gauuug  u
        ||| |||||||||||||||||||||||||||||||  ||||||   
        cga uacguuuucaUUAGCGCCAAACAUGGUUUAC  UUaaau  u
--------   c                               --      aa 

>mml-mir-580 (-53.40)   [mml-miR-580:61-82]

auaa      cag                                 uaa 
    aauuuc   uuggaaccuaaugauucaucagacucagauauu   g
    ||||||   |||||||||||||||||||||||||||||||||   u
    uuaaag   gaccuuGGAUUACUAAGUAGUCUGAGUUuauga   u
----      acu                                 caa 

>mml-mir-581 (-40.72)   [mml-miR-581:16-36]

-------        aac        -       G       G   uuuua 
       guucugug   guauUCUU GUGUUCU UAGAUCA Ugc     g
       ||||||||   |||||||| ||||||| ||||||| |||     a
       caagacac   cauaagaa cacaaga aucuagu gug     a
cgucuac        auc        a       g       -   uuuaa 

>mml-mir-582 (-44.04)   [mml-miR-582-5p:16-38] [mml-miR-582-3p:53-74]

----------auc  ug       aUUA                   Uaaucu 
             ug  cucuuug    CAGUUGUUCAACCAGUUAC      a
             ||  |||||||    |||||||||||||||||||       
             ac  gggaaac    GUCAACAAGUUGGUCAAUg      c
uuacaaagaugaa  gu       CCAA                   uuaauc 

>mml-mir-583 (-47.30)   [mml-miR-583:16-36]

aacucgcacauuu          A               -     
             acCAAAGAGG AGGUCCCAGUACugc aggg 
             |||||||||| ||||||||||||||| ||| a
             ugguuucucc uccagggucaugacg uucu 
-------------          a               a     

>mml-mir-584 (-53.50)   [mml-miR-584:16-37]

-------     u         UUA     U            G a   ug 
       uaggg gaccagcca   UGGUU GCCUGGGACUGA g auu  c
       ||||| |||||||||   ||||| |||||||||||| | |||   
       guccc uugguuggu   accaa cggaccuugacu u uag  u
caacgaa     u         cgg     c            g a   gg 

>mml-mir-586 (-42.20)   [mml-miR-586:16-39]

-----------au   -                 AU            -   -  a 
             ggg guaaaaccauUAUGCAU  UGUAUUUUUAGG UCC ca u
             ||| |||||||||||||||||  |||||||||||| ||| || a
             cuc uauuuugguaauacgua  acguaaaaaucc agg gu c
uauucuucuauuu   a                 --            c   u  g 

>mml-mir-587 (-42.01)   [mml-miR-587:16-36]

cuccua   acccucU      A                gcc    ga 
      ggc       UUCCAC GGUGAUGAGUUACagg   cagg  a
      |||       |||||| ||||||||||||||||   ||||  u
      ccg       aaggug ucacuacucagugucc   gucu  g
-cauac   -------      g                -ac    gu 

>mml-mir-589 (-45.00)   [mml-miR-589:24-45]

ucca   ugu  cca     cc   A   C  -      C       u   u 
    gcc   gc   gcagc  cUG GAA CA CGUCUG UCUGAGc ggg a
    |||   ||   |||||  ||| ||| || |||||| ||||||| ||| c
    cgg   cg   cgucg  gac cuu gu gcagac agacuug ucc u
---c   --u  -ac     ca   c   c  c      a       -   g 

>mml-mir-590 (-30.40)   [mml-miR-590-5p:16-37] [mml-miR-590-3p:56-76]

--------uagc    c   a  G       U       G     ua   u 
            cagu aga au AGCUUAU CAUAAAA UGCAG  ugg g
            |||| ||| || ||||||| ||||||| |||||  ||| g
            guca ucu UG UCGAAUA GUAUUUU AUguc  acu a
acgacgugcaaa    a   c  G       U       A     ug   g 

>mml-mir-592 (-38.30)   [mml-miR-592:16-37]

---------ua     c     ca        A    C        gu    a 
           uuaug cauga  UUGUGUCA UAUG GAUGAUGU  ugug u
           ||||| |||||  |||||||| |||| ||||||||  ||||  
           aaugc guacu  aacgcagu gugc cuacugcg  acac g
caacacugcag     a     ac        g    a        --    g 

>mml-mir-593 (-44.80)   [mml-miR-593:79-97]

-------c      -  uguguc     uc    a          --a  -     uc 
        ccccag ag      aggca  agcc ggcaucgcuc   gc cccuu  c
        |||||| ||      |||||  |||| ||||||||||   || |||||  c
        GGGGUC UC      UCUGU  uugg ucguggugag   cg ggggg  u
uccUCUUU      G  ------     --    g          gaa  a     uc 

>mml-mir-597 (-29.94)   [mml-miR-597:16-37]

u   --        ---    --GU   A UU  C          aagaga 
 acu  uacucuac   augU    GUC C  GA GACCACUGUg      g
 |||  ||||||||   ||||    ||| |  || ||||||||||       
 ugg  gugagaug   ugcg    cgg g  cu uuggugacau      u
c   uc        caa    aacu   g uu  c          guaaaa 

>mml-mir-598 (-38.30)   [mml-miR-598:61-82]

gcuugaugaugcugcugaugcu         cc     gu  g   uggaa 
                      ggcggugau  cgaug  gu agc     a
                      |||||||||  |||||  || |||      
                      CUGCUACUG  GCUAC  CA Ucg     u
------gagccuacuacuacuA         UU     UG  -   ugggg 

>mml-mir-599 (-39.00)   [mml-miR-599:61-80]

aaagacaugcu     c     --                 gg     -   u 
           gucca agugu  guuugauaagcugacau  gacag gga u
           ||||| |||||  |||||||||||||||||  ||||| ||| c
           uaggu ucaua  CAAACUAUUUGACUGUG  UUGuc cuu u
--------cag     -     cc                 --     a   u 

>mml-mir-600 (-35.10)   [mml-miR-600:57-79]

aagucacuuacugugucucca    cac  g               ca   ag 
                     gcuu   ag aaggcucuugucugu  ggc  u
                     ||||   || |||||||||||||||  |||   
                     cgga   UC UUCCGAGAACAGACA  UUG  g
----------cccgucccgac    --C  G               --   Ag 

>mml-mir-601 (-23.80)   [mml-miR-601:16-37]

ugcaugag       UG  ----C       G    A  -   ca 
        uucaucu  GU     UAGGAUU UUGG GG AGu  g
        |||||||  ||     ||||||| |||| || |||  a
        agguggg  ua     guccuag gacc cc uua  a
--------       gu  cugaa       g    -  a   aa 

>mml-mir-604 (-34.30)   [mml-miR-604:62-79]

--agagcauc     u a   ---   a   -u        cacu   ag 
          gugcu g ccu   ucc cgc  cccguguc    agc  g
          ||||| | |||   ||| |||  ||||||||    |||   
          cgcga C GGA   AGG GCG  GGgcacag    uug  c
agaggcacua     - A   CUU   -   UC        ucuu   ga 

>mml-mir-605 (-63.30)   [mml-miR-605:15-37]

c                                  CU  gg 
 ccuagcuugguucUAAAUCCCACGGUGCCUUCUC  ug  a
 ||||||||||||||||||||||||||||||||||  ||  a
 ggauugaaccaagauuuagggugucacggaagag  ac  a
-                                  --  aa 

>mml-mir-607 (-77.00)   [mml-miR-607:19-39]

ucgc                              G            c 
    ccaaagucacacagGUUAUAGAUCUGGAUU GAACccagguag c
    |||||||||||||||||||||||||||||| |||||||||||| a
    gguuucaguguguccaaugucuagaccuaa uuuggguccguc g
----                              g            a 

>mml-mir-609 (-56.70)   [mml-miR-609:16-35]

---ug       u        G                 -  c   aa 
     cucugcu uuccuAGG UGUUGCUCUCAUCUCUg gu uau  u
     ||||||| |||||||| ||||||||||||||||| || |||   
     gagacga aaggaucc acaacgggaguagagau ua aug  g
ccaag       c        g                 g  a   gg 

>mml-mir-611 (-20.20)   [mml-miR-611:40-62]

aaaau   g   ggg ua     agu   -  a  g 
     ggu aga   u  agggg   ucc cg cg a
     ||| |||   |  |||||   ||| || ||  
     cCA UCU   G  UCCCC   AGG GC Gu g
-acac   G   -GG GC     ---   A  -  a 

>mml-mir-612 (-55.20)   [mml-miR-612:17-39]

------   -ca     acc   -CU              -        -a  a 
      ucu   ucugg   cca   GGGGAGGGCUUCUG AGCUCCUc  gc c
      |||   |||||   |||   |||||||||||||| ||||||||  ||  
      agg   ggacc   ggu   ucccucccggggac ucggggag  cg u
acucuc   aca     gac   acc              c        ga  g 

>mml-mir-615 (-59.10)   [mml-miR-615-5p:18-39] [mml-miR-615-3p:61-82]

cuc   -a    c          UC     U        Cu    g ug 
   ggg  gggg ggaagGGGGG  CCCGG GCUCGGAU  cgag g  c
   |||  |||| ||||||||||  ||||| ||||||||  |||| |  u
   ccc  cccc ccUUCUCCCU  GGGUC CGAGCCUg  gcuu u  u
ccc   aa    -          CU     -        --    g ua 

>mml-mir-616 (-47.60)   [mml-miR-616:21-36]

-------u     a       cu        C     A        -c  ac 
        uaggu auuccuc  cucaAAAC CUCCA UGACUucc  ug  a
        ||||| |||||||  |||||||| ||||| ||||||||  ||   
        gucca uaaggag  gaguuuug gaggu acugaagg  ac  u
aaaauuuu     g       ac        a     c        au  ag 

>mml-mir-618 (-35.70)   [mml-miR-618:15-37]

-------u          accA      AC   U          gugau   g    
        cuuguucaca    AACUCU  UUG CCUUCUGAGU     uac ccc 
        ||||||||||    ||||||  ||| ||||||||||     ||| || a
        ggauaggugu    uuggga  aac ggaggacucg     aug ggu 
aaaagucu          ccca      ca   -          -----   a    

>mml-mir-619 (-27.60)   [mml-miR-619:61-80]

cgcccaccucagccucccaaaaugcugggauua      ug   caccg   -  ga 
                                 caggca  agc     cag uc  c
                                 ||||||  |||     ||| ||   
                                 guCCGU  UUG     GUC AG  c
----------------gacguuugacuguuagg      GU   UACAG   U  ua 

>mml-mir-624 (-57.40)   [mml-miR-624:54-74]

------------                                   -- ag  g 
            aaugcuguuucaagguaguaccaguaucuuguguu  c  ug a
            |||||||||||||||||||||||||||||||||||  |  ||  
            uuacgauagaguUCCAUUAUGGUCAUAGAACACaa  g  ac a
gugaauccacaa                                   au ga  c 

>mml-mir-625 (-55.00)   [mml-miR-625:52-72]

           auaa                  g    uaau 
aggguagaggu    ggggggaaaguucugcag ccug    u
|||||||||||    |||||||||||||||||| ||||    a
ucccgucucca    UCCCUCUUUCAAGAUGUC GGac    g
           ---c                  A    ucua 

>mml-mir-626 (-18.30)   [mml-miR-626:62-80]

accgauaucuuu     auuuc      ga    u       au     cuaaa  a 
            gucuu     ugagcu  gggg uauuuuu  gcagu     ug u
            |||||     ||||||  |||| |||||||  |||||     ||  
            cggaa     auuuga  cUUC GUAAAAG  UGUCG     Ac c
----------uu     -----      -a    U       CC     -----  u 

>mml-mir-627 (-58.30)   [mml-miR-627:52-73]

---------ua        c            g               ug u 
           cuuauuac gguagugagucu uaagaaaagaggagg  g g
           |||||||| |||||||||||| |||||||||||||||  |  
           gaauaaug ccauCACUCAGA AUUCUUUUCUCCUcc  u g
aucaucauaaa        a            G               uu u 

>mml-mir-628 (-37.00)   [mml-miR-628-5p:23-44] [mml-miR-628-3p:61-81]

auagcugu  u   a      cA  -   A   A             aaaa 
        ug guc cuuccu  UG CUG CAU UUUACUAGAGGgu    u
        || ||| ||||||  || ||| ||| |||||||||||||     
        ac cag gaaggg  GC GAC GUG GAAUGAUCUucca    u
-------u  u   -      aA  U   G   A             auaa 

>mml-mir-631 (-38.90)   [mml-miR-631:16-36]

gu      cc    uAGA      C   A  -      a 
  ggagag  uggu    CCUGGC CAG CC UCAGCu c
  ||||||  ||||    |||||| ||| || |||||| a
  ccucuc  accg    ggacug guc gg agucga c
--      ac    ---g      a   a  u      a 

>mml-mir-632 (-42.90)   [mml-miR-632:61-79]

-  c  c u     a  g   g            g  g    cga      
 cg cu c gccgc gu ccu acgggaggcgga cg cgaa   ggccg 
 || || | ||||| || ||| |||||||||||| || ||||   |||| u
 gc ga g uggcg cA GGG UGUCCUUCGUCU GU Guuu   ccggc 
u  c  u c     -  -   -            -  -    -ua      

>mml-mir-633 (-35.80)   [mml-miR-633:61-83]

aaccucucuuagccucuguuuc    c                     aaa 
                      uuua ugugguagauacuauuagccu   a
                      |||| |||||||||||||||||||||   u
                      AAAU ACACCAUCUAUGAUAAUCgga   a
-------auaguaguguuguua    A                     aga 

>mml-mir-636 (-53.60)   [mml-miR-636:61-83]

--ug  g       cggga  gc           c   -cc   u  cu  aa 
    gc gccuggg     gc  gcgggcggggc ggc   cgc gc  gg  u
    || |||||||     ||  ||||||||||| |||   ||| ||  ||   
    cg cggaucc     cg  CGUCCGCCCUG UCG   GUG cg  cc  u
gcug  g       -----  -A           C   UUC   U  cc  aa 

>mml-mir-638 (-52.80)   [mml-miR-638:16-40]

guaagcg     g    GG U   G     -  GGCGGCCUagggugcggagg 
       ggcgc gcAG  A CGC GGCGG GC                    g
       ||||| ||||  | ||| ||||| ||                    c
       ucgcg cguc  u gcg ccgcc cg                    g
-------     g    aa -   g     g  ucccucgcgguaagggccag 

>mml-mir-639 (-49.60)   [mml-miR-639:61-83]

---------ug   ga        g        ggag g  g    -      ac 
           gcc  cggggcgc cgcggccg    g gc gggc ggacgc  a
           |||  |||||||| ||||||||    | || |||| ||||||   
           ugg  gUCUCGCG GCGCUGGC    C CG ucug uuugcg  g
guccuguccua   --        A        --GA G  A    a      cc 

>mml-mir-640 (-33.80)   [mml-miR-640:61-81]

------- ug   --cu     a       aa     aaca   ----     c 
       g  acc    gggca guuccug  gauca    cau    cagau c
       |  |||    ||||| |||||||  |||||    |||    ||||| c
       c  ugg    UCCGU CAAGGAC  CUAGU    gua    gucua u
gagguuc gu   uaUC     C       --     Acgg   aaau     u 

>mml-mir-642 (-61.20)   [mml-miR-642:16-37]

--au     c       G                      ggu 
    cugag ugggagg UCCCUCUCCAAAUGUGUCUUGg   g
    ||||| ||||||| ||||||||||||||||||||||   g
    ggcuc acccucc agggagagguuuacacagaacu   g
cucc     a       a                      agg 

>mml-mir-643 (-43.10)   [mml-miR-643:61-82]

---a   acugauacg  u       g                 a   gg  u 
    cca         ca uaucuac ugagcuagaauacaagu guu  ug c
    |||         || ||||||| ||||||||||||||||| |||  ||  
    ggu         gu auaGAUG ACUCGAUCUUAUGUUCA cag  ac u
aaaa   -------aa  c       G                 -   ag  u 

>mml-mir-644 (-21.40)   [mml-miR-644:60-78]

uuuuauuuaguauucuu     ag     a    g  u    gu      u 
                 ccauc  uguuc uaag ga guug  cuguag u
                 |||||  ||||| |||| || ||||  |||||| u
                 ggugg  aCGAG AUUC UU CGGU  GAuauu u
-----------ucccuu     aa     -    G  -    GU      c 

>mml-mir-648 (-43.20)   [mml-miR-648:16-34]

agcacaga       ----      G    ----     GA   --     ag 
        cgccucc    AAGUGU CAGG    GCACU  Ugg  gggcc  g
        |||||||    |||||| ||||    |||||  |||  |||||   
        guggagg    uucacg gucc    cguga  acc  cccgg  g
--guagga       cuga      -    agga     -a   ga     ac 

>mml-mir-649 (-16.90)   [mml-miR-649:61-82]

gccc    c  a   u  --      uau      uu    --gaaaa   u 
    uagc aa uac gu  auuuuu   caacau  gguu       aca c
    |||| || ||| ||  ||||||   ||||||  ||||       |||  
    gucg uu gug cg  UGAGAA   GUUGUG  CCAA       ugu u
----    u  c   u  cC      CUU      -U    Augauua   g 

>mml-mir-650a-1 (-31.61)   [mml-miR-650a:16-36]

----ca     -------    -ucuc      C    -CU     GA   cu 
      gugcu       ggga     AGGAGG AGCG   CUCAG  Cgu  c
      |||||       ||||     |||||| ||||   |||||  |||  c
      cacgg       uccu     uccucc ucgu   ggguc  gua  a
agugga     gacucac    cccac      -    cuc     ug   cc 

>mml-mir-650a-2 (-30.80)   [mml-miR-650a:16-36]

---------------cagugcu   aucuc     G   C    UCA     ucuc 
                      ggg     AGGAG CAG GCUC   GGACu    c
                      |||     ||||| ||| ||||   |||||     
                      ccc     uccuc guc cggg   ucugg    a
aguggacacgggacucacuccu   acucc     -   u    ---     uacc 

>mml-mir-650b (-35.00)   [mml-miR-650b:16-36]

----ca     ----------     cuc      C    -C       A   cu 
      gugcu          ggggu   AGGAGG AGCG  UCUCGGG Cau  c
      |||||          |||||   |||||| ||||  ||||||| |||  c
      cacgg          uccca   uucucc ucgu  agggucc gua  a
agugga     gacucacucc     --c      -    cu       g   cc 

>mml-mir-650c (-34.70)   [mml-miR-650c:16-33]

----ca     --------    u  c     --    C    UCA   ucc 
      gugcu        gggg gu AGGAG  GCAG GCUC   Guc   a
      |||||        |||| || |||||  |||| ||||   |||    
      cacgg        ccuc ca uccuc  cguc cggg   cgg   c
aguggg     uacucacu    u  c     cu    u    -uc   uac 

>mml-mir-650d (-32.20)   [mml-miR-650d:16-36]

-ca     ----------     -cuc     A   U   GU    A   cu 
   gugcu          ggggu    AGGAG CAG GCU  CGGG Cgu  c
   |||||          |||||    ||||| ||| |||  |||| |||  c
   cacgg          uccca    uccuc guc cgg  gucc gua  a
gga     aacucacucu     cucc     -   u   --    g   cc 

>mml-mir-651 (-28.60)   [mml-miR-651:16-37]

---------     a   c         GA   A    GA       ucaaa 
         aagcu uca ugcuuUUUA  AUA GCUU  CUUUUGu     u
         ||||| ||| |||||||||  ||| ||||  |||||||      
         uuuga agu acggaaaau  uau ugaa  gaaaacg     a
uuuguauaa     c   a         uc   g    ag       caaaa 

>mml-mir-652 (-55.50)   [mml-miR-652:61-81]

ac aau  cua                  gagag           ca  g 
  g   gg   ugcacugcacaacccuag     ggugccauuca  ua a
  |   ||   ||||||||||||||||||     |||||||||||  || c
  c   cc   acgugacGUGUUGGGAUC     CCGCGGUAAgu  au u
ca -gu  aac                  ----A           ua  a 

>mml-mir-653 (-29.56)   [mml-miR-653:13-33]

-----------u      cuu              U     C    ccagcu 
            ucauuc   caGUGUUGAAACAA CUCUA UGaa      u
            ||||||   |||||||||||||| ||||| ||||      c
            aguaag   guuauaacuuuguu gaggu acuu      a
cgaagguagaau      aac              u     c    aaacaa 

>mml-mir-654 (-29.60)   [mml-miR-654-5p:16-37] [mml-miR-654-3p:51-72]

    aagugg    a      G C     A      - -  a 
gggu      aaag UGGUGG C GCAGA CAUGUG C ug g
||||      |||| |||||| | ||||| |||||| | ||  
cccg      uUUC ACUACC G CGUCU GUAUac g gc u
    --aaga    C      A U     -      c u  u 

>mml-mir-656 (-24.80)   [mml-miR-656:43-63]

----------cu    u      u     ag       cuu  u 
            gaaa agguug cugug  guguuca   uc a
            |||| |||||| |||||  |||||||   || u
            cuuU UCCAAC GACAU  UAUAAgu   ag a
cuaagcuauagc    C      U     AU       ---  u 

>mml-mir-657 (-36.70)   [mml-miR-657:47-69]

g     ga   u        a c    ac    --     u 
 gagga  ggg ccuggaga g gugg  ggcu  ccagg g
 |||||  ||| |||||||| | ||||  ||||  ||||| g
 cucuu  ccc GGAUCUCU C CACU  CUGG  GGucu g
-     ac   -        C -    -C    AC     u 

>mml-mir-660 (-32.20)   [mml-miR-660:16-37]

----------cu    c      -caUAC    U      C    U   aaau 
            gcuc uucucc      CCAU GCAUAU GGAG UGu    u
            |||| ||||||      |||| |||||| |||| |||    c
            cgag gggagg      ggua cgugug ccuc aca    u
gugcuacuguuc    u      acauua    -      u    c   aaac 

>mml-mir-661 (-49.50)   [mml-miR-661:60-83]

ggaga      g  gu    -  g    u    u     g  -u -     ug 
     ggcugu cu  gggg ca gcgc ggcc gggug cc  g agccc  a
     |||||| ||  |||| || |||| |||| ||||| ||  | |||||  u
     ucggcg gg  uucc gU CGUG CCGG UCUAU GG  C Ucggg  u
-----      g  --    a  G    C    -     G  UC G     uu 

>mml-mir-662 (-41.30)   [mml-miR-662:61-81]

-------------       a    gu     ---ca       a   u     gg u 
             gcuguug ggcu  acagc     ggaccug cgg ggggu  c u
             ||||||| ||||  |||||     ||||||| ||| |||||  |  
             cGACGAC CCGG  UGUUG     Ucuggac guc uuccg  g c
cguugcacugacg       -    --     CACCC       -   -     -- g 

>mml-mir-663 (-43.50)   [mml-miR-663:15-36]

cc uu   c   -     -C  G   - UG     --     c   ug 
  g  cgg guc ccAGG  GG GCG C  CGGGA  CCGCc ucg  u
  |  ||| ||| |||||  || ||| |  |||||  ||||| |||   
  c  gcc cgg ggucc  uu ugc g  gcccu  ggugg ggu  c
-- cg   -   u     uu  g   c gu     ag     c   gu 

>mml-mir-664 (-21.90)   [mml-miR-664:38-58]

cu    a    aaa   u         aa 
  ggcu ggga   uga uggauagaa  u
  |||| ||||   ||| |||||||||  g
  CCGA CCCU   AUU ACUUAUcuu  u
AU    C    ---   U         au 

>mml-mir-668 (-33.00)   [mml-miR-668:43-65]

    a   c   ---        g         a 
ggua gug gcc   ucggguga caugcacuu a
|||| ||| |||   |||||||| ||||||||| u
cCAU CAC CGG   GGCUCACU GUauguggg g
    -   C   CUC        -         u 

>mml-mir-671 (-68.10)   [mml-miR-671-5p:29-51] [mml-miR-671-3p:68-88]

   ggu aa     ----a    a        A   A      GA           -u   g 
gca   g  cuggc     ggcc ggaagagg GGA GCCCUG  GGGGCUGGAGg  gau g
|||   |  |||||     |||| |||||||| ||| ||||||  |||||||||||  |||  
cgu   c  gaccg     ccgg cuuucuCC CCU CGGGAC  UCUUGGCCUcc  uug a
   ggu gg     agaug    g        A   -      --           uu   u 

>mml-mir-675 (-48.70)   [mml-miR-675:10-32]

       u    U    A      CC      gacu 
cccaggg cUGG GCGG GAGGGC  ACAGUG    u
||||||| |||| |||| ||||||  ||||||     
ggguccc gacu cgcc cucccg  ugucac    g
       c    -    a      ua      agug 

>mml-mir-758 (-29.40)   [mml-miR-758:52-73]

-gcc       g    --a    u      aga   c   - uuu 
    uggauac ugag   uggu gaccag   gca acg c   a
    ||||||| ||||   |||| ||||||   ||| ||| |   u
    aucuaug acuc   AUCA CUGGUC   UGU Ugc g   a
cgua       -    CCC    C      CAG   U   c ugu 

>mml-mir-765 (-44.10)   [mml-miR-765:69-89]

uuuag     g    a  ug --ag       ga aa        -----        caa 
     gggcu auga ag  g    uucagua  c  cccuuuuc     aagcccug   g
     ||||| |||| ||  |    |||||||  |  ||||||||     ||||||||    
     uccga ugcu uc  c    aaGUCGU  G  GGGAGAGG     uuuggggu   a
--aag     g    c  gu gggg       -G AA        AGGUc        caa 

>mml-mir-767 (-43.50)   [mml-miR-767-5p:27-49] [mml-miR-767-3p:61-83]

-  -uuuu   u  u             U C       UU  C      U    c 
 gc     aua ug agguuuuugcuca G ACCAUGG  GU UGAGCA Gcag a
 ||     ||| || ||||||||||||| | |||||||  || |||||| |||| u
 cg     ugu ac ucuaaggacgagU U UGGUACC  CA ACUCGU Uguu g
u  ucauc   u  u             C U       -C  U      C    c 

>mml-mir-770 (-56.70)   [mml-miR-770-5p:20-42]

      -c     cc   c              GUCA     A      cu 
aggagc  accuu  gag cUCCAGUACCACGU    GGGCC caugag  g
||||||  |||||  ||| ||||||||||||||    ||||| ||||||   
uucucg  ugggg  cuc ggggucguggugua    uccgg gugcuc  g
      uc     -a   c              ---g     -      cg 

>mml-mir-802 (-34.00)   [mml-miR-802:18-40]

---guu      u     auC   A          A      -   cc 
      cuguua uugca   AGU ACAAAGAUUC UCCUUG Ugu  a
      |||||| |||||   ||| |||||||||| |||||| |||  u
      gauaau aaugu   uca uguuucuaag aggaac acg  c
cagguc      u     gau   c          -      g   ua 

>mml-mir-874 (-37.20)   [mml-miR-874:47-68]

--      cug   c   a  ca        a   -a a 
  uuagcc   cgg ccc cg  ccagggua gag  g g
  ||||||   ||| ||| ||  |||||||| |||  | u
  ggucgg   GCC GGG GC  GGUCCCGU cuu  c c
cg      ucA   A   A  CC        C   cg u 

>mml-mir-875 (-32.20)   [mml-miR-875-5p:11-32] [mml-miR-875-3p:45-65]

--      gu  UAU        U  A       uucc 
  uuagug  ac   ACCUCAGU UU UCAGGUG    u
  ||||||  ||   |||||||| || |||||||     
  agucac  uG   UGGAGUCA AA GGUCCac    a
ca      uc  UGU        U  A       uaaa 

>mml-mir-876 (-42.70)   [mml-miR-876-5p:11-32] [mml-miR-876-3p:50-71]

u    ug         U                aucuaa  u 
 gaag  cugUGGAUU CUUUGUGAAUCACCAu      gc a
 ||||  ||||||||| ||||||||||||||||      ||  
 cuuc  gauACUUAA GAAACAUUUGGUGGUg      ug a
a    gu         U                -----g  u 

>mml-mir-877 (-39.41)   [mml-miR-877:11-30]

gcuagagaa  UA      AU  C C          -gg  aagacuc       c 
         gG  GAGGAG  GG G AGGGgacacg   cu       ggggguu c
         ||  ||||||  || | ||||||||||   ||       ||||||| u
         cc  cuccuc  cc c ucuccugugu   ga       cucccag g
guaugugga  --      --  u u          aca  -------       g 

>mml-mir-885 (-44.50)   [mml-miR-885-5p:11-32] [mml-miR-885-3p:43-64]

--   ca    c           A  -         cu 
  ccg  cucu UCCAUUACACU CC CUGCCUCUu  c
  |||  |||| ||||||||||| || |||||||||   
  ggc  gagA AGGUGAUGUGG GG GACGGAgag  c
ug   ac    U           -  C         ua 

>mml-mir-886 (-35.80)   [mml-miR-886-5p:2-24] [mml-miR-886-3p:81-101]

cCGGGUCGGAGUUAGCUCAAGCGGuuaccuccucaugccgcacuuucuaacuguccaucucu    ----u      --c   -   C 
                                                              gugc     gggguu   gag acc G
                                                              ||||     ||||||   ||| |||  
                                                              cacg     UCCCAG   UUC UGG C
-----------------------------------------------------------aau    uauuU      UCA   G   G 

>mml-mir-887 (-37.00)   [mml-miR-887:47-68]

---      u        --  -      ag    ug auu 
   ugcaga ccuuggga  gc ccuguu  acuc  g   u
   |||||| ||||||||  || ||||||  ||||  |   u
   acguuu GGAGCCCU  CG GGGCAA  UGag  u   a
gac      c        AC  C      -G    gu cac 

>mml-mir-888 (-22.50)   [mml-miR-888:11-31]

--   agugc   A -  -   A  C          uuau 
  ggc     ccU C UC AAA AG UGUCAGUCAc    g
  |||     ||| | || ||| || ||||||||||    u
  ucg     gga g ag uuu uc acagucagug    u
ac   --gaa   a u  a   c  c          uaca 

>mml-mir-889 (-24.40)   [mml-miR-889:49-69]

--     u   g     c      uagua     -  uau 
  gugcu aaa aaugg uguccg     ugguc uc   a
  ||||| ||| ||||| ||||||     ||||| ||   u
  uauga uuU UUACC ACAGGC     AUUag ag   u
cc     u   G     A      -UAUA     u  uau 

>mml-mir-890 (-28.30)   [mml-miR-890:6-25]

--u   -----     UG      CAC       uuag 
   gcc     cUACU  GAAAGG   CAGUUac    a
   |||     |||||  ||||||   |||||||    u
   cgg     gauga  cuuucc   gucaaug    u
auu   aauga     gu      cuu       caca 

>mml-mir-891 (-24.02)   [mml-miR-891:11-32]

c   --a     U     UU  C  A        uucag 
 cuu   auccu GCAAC  AC UG GUCAUUGA     u
 |||   ||||| |||||  || || ||||||||     a
 gaa   uggga uguug  ug ac cgguaacu     a
a   aac     u     uu  u  a        uacaa 

>mml-mir-892 (-32.00)   [mml-miR-892:45-65]

--  ag        u        u  -    c  uuac 
  gc  ugcucuac uagaaagg gc cagu ac    a
  ||  |||||||| |||||||| || |||| ||    u
  cg  augaGAUG GUCUUUCC UG GUCA ug    u
cu  ga        C        -  U    C  uaca 

>mml-mir-920 (-28.50)   [mml-miR-920:51-70]

---  ag     -      aaga      -    gaaga 
   gu  uuguu cugcag    ccugga ugug     g
   ||  ||||| ||||||    |||||| ||||      
   ca  GGCGA GAUGUC    GGaccu acac     c
gca  AU     A      GAGG      c    agaau 

>mml-mir-922 (-28.70)   [mml-miR-922:56-78]

-u     --    uc    -c    ----   ggac      cag 
  ggcgu  ucuc  ucuc  cugu    ccu    uggggu   a
  |||||  ||||  ||||  ||||    |||    ||||||    
  CUGCA  AGAG  AGAG  GACG    gga    gccccg   c
ug     UC    UA    AC    aaga   ----      ugc 

>mml-mir-924 (-12.90)   [mml-miR-924:4-23]

aa    G   U U    UC U   u 
  uAGA UCU G GUUG  U GCu a
  |||| ||| | ||||  | |||  
  aucu aga c caac  a cgg a
--    g   u -    cu c   a 

>mml-mir-933 (-34.70)   [mml-miR-933:46-67]

--cu     caguuc       -   g g       u ga 
    ugggu      agagguc cuc g gcgcgcg c  g
    |||||      ||||||| ||| | ||||||| |   
    accca      UCUCCAG GGG C CGUGUgc g  u
ugac     ---CCC       A   A G       c ac 

>mml-mir-934 (-47.40)   [mml-miR-934:15-35]

                    C          A   aua  g 
aggaauaaggcuucUGUCUA UACUGGAGAC CUG   gu u
|||||||||||||||||||| |||||||||| |||   || a
ucuuuauuccgagggcaggu auggcuucug gac   ca a
                    a          a   --c  a 

>mml-mir-936 (-30.00)   [mml-miR-936:15-36]

--------uca     a    gAC   -     -    AA  G   -aaa  a u 
           aggac cugg   AGG AGAGG GAGG  UC CAG    uc c c
           ||||| ||||   ||| ||||| ||||  || |||    || |  
           uccug gacc   uuc ucuuc uucc  ag guc    ag g c
agacccggucg     -    -au   a     g    ag  a   aacg  - a 

>mml-mir-937 (-36.30)   [mml-miR-937:51-72]

   -a    -cc c   ---           g  -cu   c ccu 
agc  cugc   c ggu   gagucagggug gg   ggc c   g
|||  ||||   | |||   ||||||||||| ||   ||| |    
ucg  gacg   g CCA   CUCAGUCUCAC CC   ccg g   c
   ag    ucc u   CCU           G  UAc   c cuu 

>mml-mir-938 (-16.10)   [mml-miR-938:15-36]

gaaagugu    u  GCA       A  A G -    g  cc 
        acca gU   CUUAAAG UG A C CGGU ca  u
        |||| ||   ||||||| || | | |||| ||   
        uggu ca   gaauuuc ac u g guca gu  u
--------    u  --a       c  a g u    a  ac 

>mml-mir-939 (-58.40)   [mml-miR-939:15-38]

ugug  ca    c         U     U UG     -   c 
    gg  gggc cUGGGGAGC GAGGC C  GGGGU Ggc g
    ||  |||| ||||||||| ||||| |  ||||| |||  
    cc  ucug gaccccucg cuccg g  cccca ucg g
-gug  ag    u         u     - gu     g   g 

>mml-mir-940 (-60.90)   [mml-miR-940:60-80]

       g         cccca         -   gg  -ag  --  gug 
guggggu ugggcccgg     ggagcgggg ccu  gc   cc  cc   u
||||||| |||||||||     ||||||||| |||  ||   ||  ||   g
cacccca guccgggCC     CCUCGCCCC GGG  CG   gg  gg   u
       -         -----         C   -A  GAA  aa  agu 

>mml-mir-942 (-56.04)   [mml-miR-942:14-34]

    a                               uacuca 
auua gagaguacCUUCUCUGUUUUGGCCAUGUGug      c
|||| |||||||||||||||||||||||||||||||       
uaau cuuucauggaagagacaaagccggugcacac      a
    c                               uccccg 

>mml-mir-944 (-53.90)   [mml-miR-944:54-75]

 uu                            u      aaauu 
g  ccagacacaucucaucugauauacaaua uuucuu     g
|  |||||||||||||||||||||||||||| ||||||      
u  ggucuguguaGAGUAGACUAUAUGUUAU AAAgag     u
 gg                            U      aaaaa 

>vvi-MIR156h (-59.90)   [vvi-miR156h:11-30]

u  --cu        C  AA -         AUgcuggugggaaaacaauuacaacuuuugaucaucugaucuggaaaugcuuguaagcggcauucucuuggauuguaaucuga 
 gc    cacaaUGA AG  G AGAGAGAGC                                                                                   a
 ||    |||||||| ||  | |||||||||                                                                                   u
 cg    guguuacu uc  c ucuuucuug                                                                                   u
c  uccu        u  cg g         agucgacuaguacgucuuccgaguucggccuuuccgugagucaacuuccuuuagcaaacacccguccaacuacuaucuccguc 

>vvi-MIR169b (-61.20)   [vvi-miR169b:11-31]

---          U               U     -   c     -c         
   ggggucgaau GAGCCAAGGAUGGCU GCCGu cau ugcag  aagaguug 
   |||||||||| ||||||||||||||| ||||| ||| |||||  ||||||| g
   ucccgguuua cucgguuccuacuga uggca gug guguc  uuuucaga 
ucu          -               u     c   c     aa         

>vvi-MIR169h (-34.90)   [vvi-miR169h:11-31]

---a    gg  uU   C           UG    ccuu   c    u    g 
    gggu  aa  GAG CAAGGAUGGCU  CCGu    ugu acua uuga g
    ||||  ||  ||| |||||||||||  ||||    ||| |||| ||||  
    cucg  uu  cuc guuccuauugg  ggca    gca uggu aauu c
ucuc    -a  uc   a           ga    ---c   c    c    a 

>vvi-MIR169i (-40.60)   [vvi-miR169i:12-32]

---a    gg  uu   C  A       UG     -   uuu        uauu 
    gggu  aa  GAG CA GGAUGAC  GCCGU cau   ucaguugg    u
    ||||  ||  ||| || |||||||  ||||| |||   ||||||||    g
    cucg  uu  cuc gu ccuauug  cggca gua   ggucaauu    a
ucuc    -a  uc   u  c       gu     c   -cu        ucgg 

>vvi-MIR169l (-50.10)   [vvi-miR169l:12-32]

---a    g    u               U     ccuuugcaucaagcauu 
    gggu gaau GAGCCAAGGAUGACU GCCGU                 g
    |||| |||| ||||||||||||||| |||||                 a
    cccg uuua cucgguucuuauuga cggca                 a
ucuc    g    -               u     cguacgggucaauuucg 

>vvi-MIR169n (-45.00)   [vvi-miR169n:12-32]

--uga             AA     A      GGcaacugcagcaaggcau 
     guggaauaGAGCC  GGAUG CUUGCC                   a
     |||||||||||||  ||||| ||||||                    
     cacuuuaucucgg  ucuac gaacgg                   g
ucucc             ag     -      ucaauacuggucaauuugg 

>vvi-MIR169o (-51.70)   [vvi-miR169o:12-32]

---a    g auu                   C -    - ag   --c    au 
    gggu g   uGAGCCAAGGAUGACUUGC G Ccau c  cag   aagc  u
    |||| |   ||||||||||||||||||| | |||| |  |||   ||||   
    cccg c   acucgguucuuauugagcg c ggua g  guc   uucg  g
ucuc    g -gu                   a a    c -g   aau    aa 

>vvi-MIR169q (-48.90)   [vvi-miR169q:12-32]

--    ug           A    G  U       au  g    a   c 
  aggg  gaauaGAGCCA GGAU AC UGCCGGc  uu cagu agu u
  ||||  ||||||||||| |||| || |||||||  || |||| |||  
  uccu  uuuaucucggu ccua ug acggccg  aa guca uua a
uc    gg           -    a  u       ac  g    a   u 

>vvi-MIR169v (-42.20)   [vvi-miR169v:12-32]

      --g    A         -           - g   ---     a 
agggag   aaca AGCCAAGGA UGAAUUGCCGG c aug   aaagu g
||||||   |||| ||||||||| ||||||||||| | |||   ||||| g
ucucuc   uugu ucgguucuu auuuaacggcu g uac   uuucg c
      ggg    a         u           a g   cug     a 

>vvi-MIR169w (-57.00)   [vvi-miR169w:13-33]

----   uau ug   C   C                 aacu  c   a    -   --c   c         - uu 
    ggu   g  gug AGC AAGGAUGACUUGCCGGc    cc uuu uugu acu   aug augcucaua c  a
    |||   |  ||| ||| |||||||||||||||||    || ||| |||| |||   ||| ||||||||| |  u
    ccg   c  uac ucg uucuuacugagcggcug    gg aaa aacg uga   uac uacgggugu g  a
uacu   --u uu   a   a                 --gu  u   -    g   auu   -         u uc 

>vvi-MIR169x (-42.70)   [vvi-miR169x:12-32]

--   uc   -ugg     -     -     U       -u    cagguuucaaaacacugaau 
  guc  guc    UAGCC AAGGA UGACU GCCUAaa  ccac                    g
  |||  |||    ||||| ||||| ||||| |||||||  ||||                    u
  cgg  cag    aucgg uuccu acuga cggauuu  ggug                    a
cu   -c   ucaa     c     u     -       cu    ccuuagcgaaacaccuauua 

>vvi-MIR171g (-21.70)   [vvi-miR171g:46-66]

gcca c   --ucc          -ca    u    gac 
    g cuc     auguugguuc   ucgg gggg   a
    | |||     ||||||||||   |||| ||||    
    c gag     UAUAACCAAG   AGUU ccuc   c
uaaa c   cCCAC          CCG    -    aac 

>vvi-MIR319e (-40.40)   [vvi-miR319e:76-96]

--u c    a             g   c         cuccauc  -     aaga 
   g agaa uggggguuccuuu cag ccaaaacaa       gc ugaag    u
   | |||| ||||||||||||| ||| |||||||||       || |||||    g
   c ucuu aUCCUCGAGGGAA GUC GGUUUuguu       cg acuuc    a
ucu u    g             -   A         ----ccu  u     aagu 

>vvi-MIR393a (-53.90)   [vvi-miR393a:11-31]

--      c      A       C    U     c    uu ucuuccaccucucuua       auca 
  ggugga aguUCC AAGGGAU GCAU GAUCc augg  a                ccagacu    u
  |||||| |||||| ||||||| |||| ||||| ||||  |                |||||||     
  cuaccu ucaagg uucccua cgua cuagg uacc  u                ggucuga    a
ga      c      a       u    -     u    cu -----------uuucc       aaca 

>vvi-MIR394c (-59.50)   [vvi-miR394c:11-32]

--        u            U  A      Uauauaccaauucuucug 
  cagagcca uUUGGCAUUCUG CC CCUCCA                  a
  |||||||| |||||||||||| || ||||||                   
  gucucggu aaaccguaggac gg ggaggu                  a
au        u            c  c      uugcgaacacccgcgguu 

>vvi-MIR395n (-37.00)   [vvi-miR395n:107-127]

--   c ug        c   ac c  c     ugaccaucucucuucuucuuuuaauuuguucauca 
  ggc u  agaguucc cca  c cu cagua                                   a
  ||| |  |||||||| |||  | || |||||                                   a
  ccg g  uCUCAAGG GGU  G GA GUCau                                   u
ca   u gu        A   CU A  A     cuccuuuagugggaccuuuaucuaucaucuucuuc 

>vvi-MIR396c (-48.00)   [vvi-miR396c:11-31]

--   u     c                 A     --     ag   u   cuuc 
  uuc gugau UUCCACAGCUUUCUUGA CUGuu  uugga  ccu cca    c
  ||| ||||| ||||||||||||||||| |||||  |||||  ||| |||    a
  gag cauua aagguguugaaaggacu gacaa  aacuu  gga ggu    u
ga   u     c                 c     cc     ga   -   aacg 

>vvi-MIR397a (-46.40)   [vvi-miR397a:11-31]

gaagaaa    C              UG   ----a    ga  uau        u --a       
       acaU AUUGAGUGCAGCGU  AUG     aacu  ag   uccauuuu c   gcuucu 
       |||| ||||||||||||||  |||     ||||  ||   |||||||| |   ||||| u
       ugua uaacucacgucgcg  uac     uugg  uc   ggguagaa g   ugaagu 
------c    c              gu   cuuag    --  -uu        c gcc       

>vvi-MIR398b (-44.70)   [vvi-miR398b:58-78]

--gu    ua    u            u      ccc   ccac 
    gucc  cagg gugaccugagaa cacaug   gca    c
    ||||  |||| |||||||||||| ||||||   |||    c
    cagg  GUCC CGCUGGACUCUU GUGUac   cgu    a
cccu    uc    C            -      ucu   uucu 

>vvi-MIR398c (-45.80)   [vvi-miR398c:58-78]

--gu    ua    a            u      ccc   ucac 
    gucc  cagg gugaccugagaa cacaug   gca    c
    ||||  |||| |||||||||||| ||||||   |||    c
    cagg  GUCC CGCUGGACUCUU GUGUac   cgu    a
cccu    uc    C            -      ucu   uucu 

>vvi-MIR399c (-39.40)   [vvi-miR399c:52-72]

--     u u      cu     ac         g --   a 
  accgg c cagggc  cuuuc  uugguaggu a  cau g
  ||||| | ||||||  |||||  ||||||||| |  |||  
  ugguc g GUCCCG  GAGAG  AACCGUcua u  gug a
au     u u      UU     GA         g aa   u 

>vvi-MIR399d (-49.20)   [vvi-miR399d:75-95]

--g      aua                      ggcgaucacaagccaaug 
   uaaauu   gagcagauuucuuuuggcagau                  u
   ||||||   ||||||||||||||||||||||                  g
   auuuaa   CUCGUUUAGAGGAAACCGUcug                  c
uca      gUG                      ugugaguuacgggaaacu 

>vvi-MIR399f (-38.60)   [vvi-miR399f:76-96]

-------      uuaga    c      g        ---u    ccc   ua      ucg 
       guugca     gggc aaaucu cuuuggca    gaag   auu  gcaggc   u
       ||||||     |||| |||||| ||||||||    ||||   |||  ||||||    
       uaacGU     CCUG UUUAGA GAAGCCGU    cuuc   uga  cgucug   c
gucuucu      -----    -      G        cgcu    ---   --      ugu 

>vvi-MIR399i (-57.90)   [vvi-miR399i:92-112]

--      ug      uu        c    aggagauggcaauagauuauccuuuguggc 
  aguagu  uagggc  cucuccuu uggc                              u
  ||||||  ||||||  |||||||| ||||                              u
  ucauca  GUCCCG  GAGAGGAA ACCG                              a
cu      gu      UU        -    Cccaguaaccuucaauuaguuguggccucu 

>vvi-MIR403a (-48.30)   [vvi-miR403a:85-105]

g  cau    --                a   c  a   u gc     --------a    u 
 ca   cuca  aguuugugcgugaauc aac cc ucg a  cgucc         uauc u
 ||   ||||  |||||||||||||||| ||| || ||| |  |||||         ||||  
 gu   gagu  UCAAACACGCACUUAG UUg gg agc u  gcggg         augg c
a  cuu    GC                A   c  c   - ua     gcacuaauc    g 

>vvi-MIR403b (-43.44)   [vvi-miR403b:56-76]

--acaaac              c     c        gaucuu 
        cucgaguuugugcg gaauc aacgccuc      c
        |||||||||||||| ||||| ||||||||       
        ggGCUCAAACACGC CUUAG UUgugggg      u
ucugucua              A     A        aaacuu 

>vvi-MIR403c (-45.20)   [vvi-miR403c:85-105]

--   c   u a                a   cc a   u gc     --------a    u 
  gca auc c aguuugugcgugaauc aac  c ucg a  cgucc         uauc u
  ||| ||| | |||||||||||||||| |||  | ||| |  |||||         ||||  
  ugu uag G UCAAACACGCACUUAG UUg  g agc u  gcggg         augg c
cc   c   u C                A   cc c   - ua     gcacuaauc    g 

>vvi-MIR403d (-40.24)   [vvi-miR403d:56-76]

--acaaac              c     --ca      caaucu 
        cucgaguuugugcg gaauc    accccu      u
        |||||||||||||| |||||    ||||||       
        ggGCUCAAACACGC CUUAG    ugggga      c
ucugucua              A     AUUg      aacuuu 

>vvi-MIR403e (-44.31)   [vvi-miR403e:85-105]

--   c   u a                a   cc a   u gc     auaucuu    ua 
  gca auc c aguuugugcgugaauc aac  c ucg a  cgucc       cgug  c
  ||| ||| | |||||||||||||||| |||  | ||| |  |||||       ||||  u
  ugu uag G UCAAACACGCACUUAG UUg  g agc u  gcggg       gcac  a
cc   c   c C                A   cc c   - ua     -------    ua 

>vvi-MIR403f (-36.92)   [vvi-miR403f:78-98]

--ug    g g              c     aaccgccugaucuaaaccuuuuc 
    agau a gaguuugugcguga ucuaa                       c
    |||| | |||||||||||||| |||||                        
    ucua u CUCAAACACGCACU AGAUU                       c
ucug    a G              U     cugguaucuuuuccauagcguag 

>vvi-MIR477 (-40.30)   [vvi-miR477:11-31]

--g     gu   UC       AAGG             u g  gau 
   aaguu  caA  UCCCUCA    CUUCCAAuuuucc g cu   u
   |||||  |||  |||||||    ||||||||||||| | ||    
   uucga  guu  agggggu    gaagguugaaagg u ga   a
cca     ag   cc       gaca             u g  acu 

>vvi-MIR482 (-51.80)   [vvi-miR482:86-107]

--aauguu       u    -          c     ca    uu    ----      uuu 
        ugggaau ggag aguaggaaag uuagc  ucua  cccu    ucaugg   c
        ||||||| |||| |||||||||| |||||  ||||  ||||    ||||||    
        auCCUUA CCUC UCAUCCUUUC gaucg  agau  gggg    gguacc   c
cuuuuguu       C    C          U     --    cu    guua      ucu 

>vvi-MIR828a (-42.20)   [vvi-miR828a:10-31]

----ua   a   U   G             UC   a      -  ---   -  ag a     u 
      uaa guu CUU CUCAAAUGAGUAU  CAa caacag cu   ugu ga  c augau a
      ||| ||| ||| |||||||||||||  ||| |||||| ||   ||| ||  | |||||  
      auu caa gaa gaguuuacucgua  guu guuguu gg   acg cu  g uacug c
guaaaa   c   c   g             ga   -      a  ugu   u  cu a     u 

>vvi-MIR828b (-21.00)   [vvi-miR828b:11-32]

--gcu        CU   -UC      G   U   cau 
     cuugguuU  UGC   AAAUGA UGU CCA   c
     ||||||||  |||   |||||| ||| |||    
     ggaccaaa  acg   uuuacu aua ggu   a
ucuuu        --   ucc      g   -   cca 

>vvi-MIR845a (-108.60)   [vvi-miR845a:412-432]

uuucacuugauuaguuccuucaugaguuauugcaaguaaucuccaaauuuccuuagcggauuuacauugacauauucuauuauauucauuccuauccauagcacauugcaaaguaaaaac     uag       -uu      uu  --            auuccauucuugcuuggguuuuggaaccaaaauuccaucaacuaauuuaguggguaaaguugggccaucuucaauggcaucccauacaucuaaauca 
                                                                                                                        gacuu   cauuuaa   gaaaau  cu  ucuaucaagcuc                                                                                                 g
                                                                                                                        |||||   |||||||   ||||||  ||  ||||||||||||                                                                                                  
                                                                                                                        cugaa   guagauu   cuuuua  ga  agguaguucgag                                                                                                 u
---------------------------------------------------------------------------cggaaacaaaAUAGUUAACCAUAGUCUCGAUcuggagaacgaauu     uua       cuc      cc  ua            uagaguuugacuuuuaacaaguuuuguaucucgagguaagaaaugcccuuggcugauagggauaaccuuucgaucuuacugaaccaugaauguuagu 

>vvi-MIR845b (-106.10)   [vvi-miR845b:412-432]

uuucacuugauuaguuccuucaugaguuauuucaagcaaucuccaaauuuccuuagcagauuuacauuggcauauucuauuauauucauuccuauccauagcacauugcaaaguaaaaac     uag       -uu      --  c             auuccauucuugcuugaguuuuggaaccaaaacuccaucaacuaauuuagugggaaaaguugggccaucuucaaugacaucccauacaucuaaauca 
                                                                                                                        gacuu   cauuuaa   gaaaau  uu uucuaucaagcuc                                                                                                 g
                                                                                                                        |||||   |||||||   ||||||  || |||||||||||||                                                                                                  
                                                                                                                        cugaa   guagauu   cuuuua  aa aagguaguucgag                                                                                                 u
---------------------------------------------------------------------------cggaaacaaaAUAGUUAACCAUAGUCUCGAUcuggagaacgaauu     uua       cuc      cc  c             uagaguuugacuuuuaacaaguuuuguaucucgagguaagaaaugcccuuggcugauagggauaaccuuucaaucuuacugaaccaugaauguuagu 

>vvi-MIR845c (-30.30)   [vvi-miR845c:60-80]

--caa         --     u   u            ggc    uc 
     uuauguguu  uuggu guc gaguuucauguu   aauu  u
     |||||||||  ||||| ||| ||||||||||||   ||||  u
     aauacGUAG  AACCA UAG CUCGGAguacaa   uuag  a
uacca         UU     -   U            --a    ua 

>vvi-MIR845d (-32.25)   [vvi-miR845d:101-121]

----auaa  aa        auccc            auaaacaaaaacuc   -aa     ag    ca 
        cc  cauuaauu     uagggccauggg              ugc   aacca  uuag  c
        ||  ||||||||     ||||||||||||              |||   |||||  ||||   
        gg  GUAGUUAA     GUCUCGGUaucc              acg   uuggu  gauc  a
uccaaaaa  --        CCAUA            ----aaucauuaac   auc     aa    cc 

>vvi-MIR845e (-31.30)   [vvi-miR845e:101-121]

--agaacgca        auccc            auaaacaaaaaccuugaaaaaacaaguuag 
          cauuaauu     uagggccauggg                              c
          ||||||||     ||||||||||||                              a
          GUAGUUAA     GUCUCGGUaucc                              c
cucaaaaagg        CCAUA            aaucauuagcacgaucuugguaagauccca 

>cel-mir-1817 (-27.30)   [cel-miR-1817:21-43]

ugu       -aauu    a U   C     C   U        c    uaca 
   acauuuc     uucg g AGC AAUGU UUC CUAUCAUG auuu    a
   |||||||     |||| | ||| ||||| ||| |||||||| ||||     
   uguagag     aagu c ucg uuaua aag gauaguac ugag    a
-uu       acuuu    c u   u     -   u        a    uaau 

>cel-mir-1818 (-40.40)   [cel-miR-1818:19-41]

cu        u     u   U   C    U  C            cu 
  ggaaagag ggccu uUG GGU UUCA GC AUGAUUUUauca  c
  |||||||| ||||| ||| ||| |||| || ||||||||||||  a
  cuuuucuu ucgga agc cca aggu ug uacuaaaauagu  a
uu        u     c   u   a    u  a            ca 

>cel-mir-1819 (-27.84)   [cel-miR-1819:51-72]

aa   g     a    u      aa     g   uaacuu 
  uca ugauc auca gcucaa  cauuc aca      a
  ||| ||||| |||| ||||||  ||||| |||       
  agu gcuAG UAGU CGAGUU  GUAAG Ugu      a
aa   a     G    U      -A     G   uucuuu 

>cel-mir-1820 (-39.90)   [cel-miR-1820:23-47]

u   a      c         cU           UU     AU       aaau 
 uca aaauug auuuuccau  UUUGAUUGUUU  CGAUG  GUUCguu    c
 ||| |||||| |||||||||  |||||||||||  |||||  |||||||    g
 agu uuuaac uaagaggua  aaacuaacaaa  guuac  caagcga    g
u   a      -         ag           -u     --       auau 

>cel-mir-1821 (-29.80)   [cel-miR-1821:61-81]

-      -     --   caa       c    ugc     uu        cgg 
 auaugu aguug  gua   guuugcc aacu   agacu  ucaauuuu   c
 |||||| |||||  |||   ||||||| ||||   |||||  ||||||||    
 uauaua ucaac  cau   caGAUGG UUGA   UCUGG  AGUuaagg   a
a      a     au   uua       A    UAU     --        uga 

>cel-mir-1822 (-32.00)   [cel-miR-1822*:19-42] [cel-miR-1822:58-79]

a       aaacu    u     C    -  AA   UA    C  aau 
 uucuuga     ccaa AGUUU UCUG GG  AGC  UCGG ca   u
 |||||||     |||| ||||| |||| ||  |||  |||| ||    
 aagagcu     gguU UCAAA AGAC CC  UCG  AGcc gu   u
a       -acuc    C     A    U  CG   --    u  caa 

>cel-mir-1823 (-26.80)   [cel-miR-1823:53-74]

c      --    a   c  c     c -  a g        --g a 
 uuugac  cuga cgu ac ccuaa c cu u caguauuu   g g
 ||||||  |||| ||| || ||||| | || | ||||||||   |  
 agacug  gacu guA UG GGAUU G GA A GUCAUaaa   c c
a      uu    c   A  A     U U  - G        aua u 

>cel-mir-1824 (-32.80)   [cel-miR-1824:13-35]

g   --       u   C       CU  - --     --      uac 
 uuc  accagag UGG AGUGUUU  CC C  CCAAC  UUuugu   a
 |||  ||||||| ||| |||||||  || |  |||||  ||||||   g
 aag  uggucuc gcc ucacaag  gg g  gguug  aaaacg   a
g   uu       c   u       -u  u cc     ua      uua 

>cfa-mir-216b (-19.80)   [cfa-miR-216b:1-22]

--A         A  --CAAA      g  ac 
   AAUCUCUGC GG      UGUGAu uc  u
   ||||||||| ||      |||||| ||   
   uuagagaug cc      acacua ag  a
guc         c  auucac      a  aa 

>cfa-mir-33 (-25.70)   [cfa-miR-33:1-20]

--         A UU          uucu  c 
  GUGCAUUGU G  GCAUUGCaug    gg g
  ||||||||| |  ||||||||||    || g
  uacgugaca c  uguaacgugc    cc u
ac         c uu          ----  a 

>cfa-let-7a-1 (-31.90)   [cfa-let-7a:1-22]

--U   GU               --- ug    ucu 
   GAG  AGUAGGUUGUAUAGU   U  gggc   g
   |||  |||||||||||||||   |  ||||    
   uuc  ucaucuaacauauca   g  cucg   c
ccu   ug               aug gu    ucc 

>cfa-mir-26a-2 (-24.74)   [cfa-miR-26a:1-22]

--UU         C          guuucc 
    CAAGUAAUC AGGAUAGGCU      g
    ||||||||| ||||||||||       
    guucauuag ucuuauccgg      u
cuuu         u          aguguc 

>cfa-mir-1835 (-22.80)   [cfa-miR-1835:1-22]

--    C  UG    C     CA   -   u 
  UGCA CC  AGAG UGGAG  Ggu cuc u
  |||| ||  |||| |||||  ||| |||  
  acgu gg  ucuc acuuc  cca ggg a
gg    a  ug    a     ua   a   c 

>cfa-mir-32 (-26.20)   [cfa-miR-32:1-23]

--   UG     U            - uu  c 
  UAU  CACAU ACUAAGUUGCAU g  gu a
  |||  ||||| |||||||||||| |  ||  
  aua  gugug ugauuuaacgua c  cg c
uu   gu     -            a uc  g 

>cfa-mir-204 (-27.76)   [cfa-miR-204:1-22]

--U          A     U    gagaau 
   UCCCUUUGUC UCCUA GCCU      a
   |||||||||| ||||| ||||      u
   agggaaacgg agggu cgga      a
ugc          a     -    ggaagu 

>cfa-mir-31 (-27.70)   [cfa-miR-31:1-23]

--A     G   C         -U   gaa 
   GGCAA AUG UGGCAUAGC  GUu   c
   ||||| ||| |||||||||  |||    
   ccguu uac accguaucg  caa   u
cua     a   a         uc   gag 

>cfa-mir-101-2 (-18.90)   [cfa-miR-101:36-55]

--              c a    guaua 
  gguuaucaugguac g ugcu     u
  |||||||||||||| | ||||      
  UCAAUAGUGUCAUG C AUgg     c
AG              A -    aaagu 

>cfa-mir-371 (-25.00)   [cfa-miR-371:1-22]

--       AAA   C         cuacc 
  ACUCAAA   UGG GGCACUUUc     u
  |||||||   ||| |||||||||      
  ugaguuu   acc ccgugaaag     a
gg       gac   c         acaag 

>cfa-mir-491 (-23.80)   [cfa-miR-491:34-54]

-- u      cc   c          a 
  g ggggaa  cuu caugaggagu g
  | ||||||  ||| |||||||||| a
  C UCCCUU  GAA GUAUUCcuca a
AU U      -A   C          c 

>cfa-mir-150 (-28.40)   [cfa-miR-150:1-22]

--       ACC          -U    u 
  UCUCCCA   CUUGUACCAG  Gcug g
  |||||||   ||||||||||  |||| c
  ggggggu   ggacaugguc  ugac c
ac       -ac          cc    u 

>cfa-mir-455 (-27.20)   [cfa-miR-455:1-22]

--         U      A   C   gaa 
  UAUGUGCCU UGGACU CAU Gug   g
  ||||||||| |||||| ||| |||    
  auauacggg accuga gua cac   c
ac         u      c   c   gac 

>cfa-mir-30a (-31.80)   [cfa-miR-30a:1-23]

--           UC           -----   a 
  UGUAAACAUCC  GACUGGAAGCu     gug a
  |||||||||||  |||||||||||     |||  
  acguuuguagg  cugacuuucgg     cac g
cg           --           guaga   c 

>cfa-mir-30c-2 (-24.04)   [cfa-miR-30c:1-24]

--U       U   ACA         guggaa 
   GUAAACA CCU   CUCUCAGCU      a
   ||||||| |||   |||||||||       
   cauuugu gga   gagggucga      g
ucu       c   --a         aagaau 

>cfa-mir-206 (-22.70)   [cfa-miR-206:39-60]

--                cc    ----   g 
  acaugcuucuuuauau  ccau    acg a
  ||||||||||||||||  ||||    ||| u
  UGUGUGAAGGAAUGUA  GGUa    ugc u
GG                -A    ucgu   a 

>cfa-mir-99b (-23.90)   [cfa-miR-99b:1-22]

--C         AC   C    C - -   c 
   ACCCGUAGA  CGA CUUG G g ggc u
   |||||||||  ||| |||| | | |||  
   ugggugucu  gcu gaac c c ccg u
guc         ga   c    a a g   c 

>cfa-let-7e (-29.20)   [cfa-let-7e:1-22]

--U   G                U  ----g a  a 
   GAG UAGGAGGUUGUAUAGU ga     g gg c
   ||| |||||||||||||||| ||     | ||  
   uuc auccuccggcauauca cu     c cc a
ccu   g                -  agagg a  c 

>cfa-mir-125a (-26.60)   [cfa-miR-125a:1-22]

--UC  UG   C    UA        ----  a 
    CC  AGA CCUU  ACCUGUga    gg c
    ||  ||| ||||  ||||||||    ||  
    gg  ucu ggag  uggacacu    cc a
ccga  gu   u    --        ggga  u 

>cfa-let-7f (-37.90)   [cfa-let-7f:1-22]

--U                       ---------       u 
   GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
   |||||||||||||||||||||||         ||||||| a
   uuccguuaucuaacauaucaaua         ucccauu u
ccc                       gaggacuug       u 

>cfa-mir-219-1 (-26.20)   [cfa-miR-219:1-21]

--U   U     A  G         a   ucu 
   GAU GUCCA AC CAAUUCUcg guc   g
   ||| ||||| || ||||||||| |||   g
   cug caggu ug guugagagc cgg   c
gcc   -     c  a         -   ucu 

>cfa-mir-23b (-19.84)   [cfa-miR-23b:36-54]

--          -  c      gugacu 
  guuccuggca ug ugauuu      u
  |||||||||| || ||||||       
  UAGGGACCGU AC ACUAaa      a
AU          U  -      auuaga 

>cfa-mir-27b (-25.70)   [cfa-miR-27b:43-63]

--            auug        ugac     
  agagcuuagcug    gugaacag    uggu 
  ||||||||||||    ||||||||    ||| u
  UCUUGAAUCGGU    CACUUguu    gccu 
CG            --GA        --uc     

>cfa-mir-24-1 (-20.62)   [cfa-miR-24:40-62]

--g  g   a         ua     ucuca 
   gu ccu cugagcuga  ucagu     u
   || ||| |||||||||  |||||     u
   CA GGA GACUUGACU  GGUca     g
GGA  A   C         -C     cacau 

>cfa-mir-151 (-29.80)   [cfa-miR-151:1-21]

--          CA          -u  c 
  UCGAGGAGCU  CAGUCUAGUa  gu u
  ||||||||||  ||||||||||  ||  
  aguuccucgg  gucagaucau  cg c
gg          -a          cc  a 

>cfa-mir-30d (-26.40)   [cfa-miR-30d:1-24]

--U         CCC           ggaag 
   GUAAACAUC   GACUGGAAGCU     a
   |||||||||   |||||||||||      
   cguuuguag   cugacuuucga     c
cgu         --a           aacga 

>cfa-mir-30b (-24.40)   [cfa-miR-30b:1-22]

--U          U  -A        uagua 
   GUAAACAUCC AC  CUCAGCUg     c
   |||||||||| ||  ||||||||      
   cauuuguagg ug  gggucggu     a
cuu          -  ga        uaggu 

>cfa-mir-1836 (-23.10)   [cfa-miR-1836:1-23]

---UA   CAUG      A          a 
     GGC    GUAGAU GAGAUGGagu a
     |||    |||||| ||||||||||  
     ccg    cgucua cucuacuuua c
cagac   -uca      -          c 

>cfa-mir-122 (-24.90)   [cfa-miR-122:1-22]

--UGG       C           --u  c 
     AGUGUGA AAUGGUGUUUG   gu c
     ||||||| |||||||||||   ||  
     ucacacu uuaccgcaaac   ca a
auaaa       a           uau  a 

>cfa-mir-196b (-24.60)   [cfa-miR-196b:1-23]

--U       U  C           ucca 
   AGGUAGU UC UGUUGUUGGGA    c
   ||||||| || |||||||||||     
   uccguca ag acgacagcucu    c
acu       c  c           cuuu 

>cfa-mir-183 (-21.80)   [cfa-miR-183:1-22]

--      --AC     GA        --   ac 
  UAUGGC    UGGUA  AUUCACUg  uga  a
  ||||||    |||||  ||||||||  |||   
  auaccg    gccau  uaagugac  gcu  g
aa      ggaa     --        ug   cu 

>cfa-mir-148a (-17.80)   [cfa-miR-148a:39-60]

--         -  -a    cc    -   aa 
  aaaguucug ag  cacu  gacu cug  u
  ||||||||| ||  ||||  |||| |||  a
  UUUCAAGAC UC  GUGA  CUga gau  u
UG         A  AC    --    a   ag 

>cfa-mir-129-1 (-26.30)   [cfa-miR-129:1-21]

--       C   CU      G   uu cu  c 
  CUUUUUG GGU  GGGCUU Cug  c  cu a
  ||||||| |||  |||||| |||  |  ||  
  gaaaaac cca  cccgaa gac  g  ga a
au       c   uu      g   -u au  c 

>cfa-mir-335 (-21.10)   [cfa-miR-335:1-23]

--   A         C        U  gu 
  UCA GAGCAAUAA GAAAAAUG uu  c
  ||| ||||||||| |||||||| ||   
  agu cucguuauu cuuuuugc aa  a
cc   c         a        c  au 

>cfa-mir-29b-1 (-24.22)   [cfa-miR-29b:43-65]

--a          u      gu      uuaaa 
   gcugguuuca auggug  uuagau     u
   |||||||||| ||||||  ||||||     a
   UGACUAAAGU UACCAC  GAUcug     g
UUG          U      --      uuagu 

>cfa-mir-29a (-21.60)   [cfa-miR-29a:39-60]

--         uuu       c    ucaa 
  acugauuuc   ugguguu agag    u
  |||||||||   ||||||| ||||    a
  UGGCUAAAG   ACCACGA Ucuu    u
AU         UCU       -    uuaa 

>cfa-mir-30e (-30.80)   [cfa-miR-30e:43-64]

--           uu           g aag u 
  uguaaacaucc  gacuggaagcu u   g g
  |||||||||||  ||||||||||| |   |  
  ACAUUUGUAGG  CUGACUUUCgg g   c c
CG           --           g aga u 

>cfa-mir-30c-1 (-24.60)   [cfa-miR-30c:1-24]

--U       U   ACA         ---g  a 
   GUAAACA CCU   CUCUCAGCU    ug g
   ||||||| |||   |||||||||    ||  
   cauuugu ggg   gagggucgg    ac c
ccu       u   --a         ugga  u 

>cfa-mir-135a-2 (-25.70)   [cfa-miR-135a-5p:2-24] [cfa-miR-135a-3p:41-62]

--           U            u g a 
  uUAUGGCUUUU AUUCCUAUGUGA a u a
  ||||||||||| |||||||||||| | | u
  AGUACCGAAGG UAGGGAUGUacu u a a
AA           -            c g a 

>cfa-mir-383 (-26.50)   [cfa-miR-383:1-22]

--A      AA    A        uug   gga 
   GAUCAG  GGUG UUGUGGCU   ggu   u
   ||||||  |||| ||||||||   |||    
   cugguc  ucac gacaccga   cua   a
aga      cg    -        ---   auu 

>cfa-mir-1837-1 (-18.60)   [cfa-miR-1837:38-59]

--    ga   cu         a ua  u 
  augu  ugg  cuucugaga g  cu c
  ||||  |||  ||||||||| |  || g
  UACA  GUC  GGAGACUCU c  gg a
UC    GC   AG         c uc  u 

>cfa-mir-130a (-22.70)   [cfa-miR-130a:41-62]

--        c      ug  a   uc  ca 
  gcucuuuu acauug  cu cug  ug  c
  |||||||| ||||||  || |||  ||  c
  CGGGAAAA UGUAAC  GA gau  ac  u
UA        U      GU  C   -c  ca 

>cfa-mir-129-2 (-23.70)   [cfa-miR-129:1-21]

--       C   CU      ---     a au 
  CUUUUUG GGU  GGGCUU   GCugu c  a
  ||||||| |||  ||||||   ||||| |  a
  gaaaaac cca  cccgaa   cgaua g  c
ac       c   uu      ggc     - cu 

>cfa-mir-192 (-29.49)   [cfa-miR-192:1-21]

--C         -     A       ugcucuc 
   UGACCUAUG AAUUG CAGCCag       a
   ||||||||| ||||| |||||||        
   acuggauac uuaac gucgguc       u
gac         c     c       uccucuc 

>cfa-mir-128-1 (-25.20)   [cfa-miR-128:36-56]

--c       uag      cu       u 
   ggggccg   cacugu  gagaggu u
   |||||||   ||||||  |||||||  
   CUCUGGC   GUGACA  CUcuuua a
UUU       CAA      --       c 

>cfa-mir-7-1 (-25.00)   [cfa-miR-7:1-23]

--   A     A       U      --     a 
  UGG AGACU GUGAUUU GUUGUu  uuuag u
  ||| ||||| ||||||| ||||||  |||||  
  acc ucuga cacuaaa caacag  aaauc a
au   g     -       -      cu     a 

>cfa-mir-181c (-23.70)   [cfa-miR-181c:1-23]

--AA        CU       A     ggca 
    CAUUCAAC  GUCGGUG GUUug    g
    ||||||||  ||||||| |||||    c
    gugaguug  cagcuac caaac    u
ccag        -c       -     ggac 

>cfa-mir-181d (-28.20)   [cfa-miR-181d:1-23]

--A         G UG          guga  a g 
   ACAUUCAUU U  UCGGUGGGUu    gg c g
   ||||||||| |  ||||||||||    || |  
   uguaaguag g  agccacccag    cc g a
cac         g --          ---a  - g 

>cfa-let-7g (-34.70)   [cfa-let-7g:1-22]

--U        A            ugagg    -a  a    a 
   GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
   |||||||| ||||||||||||     ||||  || ||||  
   uuccguca cggacaugucaa     uaga  ac augg c
ccg        c            -----    gg  -    c 

>cfa-mir-191 (-27.10)   [cfa-miR-191:1-22]

--C          C  AA       uu  -  c 
   AACGGAAUCC AA  GCAGCUg  gu cu c
   |||||||||| ||  |||||||  || ||  
   uugcuuuagg uu  cgucgac  ua ga a
ccc          -  cg       cu  c  g 

>cfa-mir-425 (-24.60)   [cfa-miR-425:1-23]

--AAU       U  C     U  ----Ag   g 
     GACACGA CA UCCCG UG      ugg c
     ||||||| || ||||| ||      |||  
     cugugcu gu agggc ac      acc a
cccgc       -  a     u  cgaaga   c 

>cfa-mir-23a (-22.50)   [cfa-miR-23a:34-52]

--        g    g      c  c 
  guuccugg gaug gauuug ug c
  |||||||| |||| |||||| || u
  UAGGGACC UUAC CUAaac ac g
UU        G    A      -  u 

>cfa-mir-27a (-27.50)   [cfa-miR-27a:41-60]

--         ug  u       -  g cca 
  gggcuuagc  cu gugagca ga u   c
  |||||||||  || ||||||| || |    
  CUUGAAUCG  GA CACUUgu cu a   a
GC         GU  -       g  g acc 

>cfa-mir-24-2 (-23.10)   [cfa-miR-24:40-62]

--c  g   a         aaca     gauu 
   gu ccu cugagcuga    caguu    u
   || ||| |||||||||    |||||     
   CA GGA GACUUGACU    GUcag    g
GGA  A   C         --CG     acgu 

>cfa-mir-199-1 (-26.40)   [cfa-miR-199:41-61]

--       u        c   ------     g 
  ccagugu cagacuac ugu      ucagg g
  ||||||| |||||||| |||      |||||  
  GGUUACA GUCUGAUG ACA      agucu g
UU       C        -   ugugua     c 

>cfa-mir-708 (-25.90)   [cfa-miR-708:1-23]

--A           A     C  G ----g   aac 
   AGGAGCUUACA UCUAG UG G     gug   g
   ||||||||||| ||||| || |     |||   g
   ucuucgagugu agauc ac c     cac   c
aga           c     a  g aagua   guu 

>cfa-mir-1838 (-35.40)   [cfa-miR-1838:1-21]

--  A     UG   UU     G --g  g 
  CC CCAGC  GCG  CCCUG c   ug g
  || |||||  |||  ||||| |   ||  
  gg ggucg  cgu  gggac g   gc a
ag  a     gu   cg     g aga  a 

>cfa-mir-139 (-31.00)   [cfa-miR-139:36-57]

--   -   u  a            -g  g 
  cua cag gc cgugucuccagu  ug c
  ||| ||| || ||||||||||||  ||  
  GGU GUC CG GCGCAGAGGUcg  gc u
AA   U   C  -            ga  c 

>cfa-mir-138b (-29.30)   [cfa-miR-138b:1-24]

--AG             UCAU    -Ac   c  cg 
    CUGGUGUUGUGAA    GCCG   gag ag  c
    |||||||||||||    ||||   ||| ||   
    gaccacagcacuu    cggc   uuc uc  a
uugg             -uau    cca   -  cu 

>cfa-mir-15a (-24.90)   [cfa-miR-15a:1-21]

--UA        UA          ga  u 
    GCAGCACA  AUGGUUUGUg  uu u
    ||||||||  ||||||||||  || g
    cgucgugu  uaccggacgu  aa a
acuc        ua          gg  a 

>cfa-mir-16-1 (-24.30)   [cfa-miR-16:1-22]

--         -  A        C u   gauu 
  UAGCAGCAC GU AAUAUUGG G uaa    c
  ||||||||| || |||||||| | |||     
  gucgucgug ca uuaugacc c auu    u
aa         u  a        u u   aaaa 

>cfa-mir-17 (-22.70)   [cfa-miR-17:38-59]

--ca        a  g     g   -  au 
    aagugcuu ca ugcag uag ug  a
    |||||||| || ||||| ||| ||  u
    UUCACGGA GU ACGUC Auc ac  g
GAUG        A  G     -   u  gu 

>cfa-mir-19a (-23.00)   [cfa-miR-19a:36-58]

--            --      ---    ag 
  aguuuugcauag  uugcac   uaca  a
  ||||||||||||  ||||||   ||||  a
  UCAAAACGUAUC  AACGUG   augu  g
AG            UA      Uug    aa 

>cfa-mir-20a (-26.60)   [cfa-miR-20a:1-23]

---UA                 G   -  uu 
     AAGUGCUUAUAGUGCAG UAG ug  u
     ||||||||||||||||| ||| ||   
     uucacgaguauuacguc auc au  c
ugaaa                 -   u  ug 

>cfa-mir-19b-1 (-22.62)   [cfa-miR-19b:38-59]

--        -  -      uc    ugugu 
  guuuugca gg uuugca  cagc     g
  |||||||| || ||||||  ||||     a
  CAAAACGU CC AAACGU  GUcg     u
GU        A  U      --    ucuua 

>cfa-mir-92a-1 (-31.50)   [cfa-miR-92a:38-59]

--          c   u           uu 
  agguugggau ggu gcaaugcugug  u
  |||||||||| ||| |||||||||||   
  UCCGGCCCUG UCA CGUUAUgguau  c
UG          U   -           gu 

>cfa-mir-138a (-31.40)   [cfa-miR-138a:1-23]

--AG             UCA       gc a 
    CUGGUGUUGUGAA   GGCCGuu  c a
    |||||||||||||   |||||||  | u
    gaccacaacacuu   ucggcaa  g c
cugg             -ca       ga a 

>cfa-mir-128-2 (-22.90)   [cfa-miR-128:38-58]

--        aua      ac    g gag 
  gggggccg   cacugu  gaga u   u
  ||||||||   ||||||  |||| |    
  UCUCUGGC   GUGACA  CUcu g   a
UU        CAA      --    g acg 

>cfa-mir-26a-1 (-23.90)   [cfa-miR-26a:1-22]

--UU         C          --g  ca 
    CAAGUAAUC AGGAUAGGCU   ug  g
    ||||||||| ||||||||||   ||  g
    guucauugg ucuuauccgg   ac  u
gcac         u          gua  cc 

>cfa-mir-499 (-23.42)   [cfa-miR-499:1-21]

--UUA        A          acucc 
     AGACUUGC GUGAUGUUUa     u
     |||||||| ||||||||||     c
     ucugaacg cacuacaagu     u
ucgug        a          gcacc 

>cfa-mir-1-1 (-22.40)   [cfa-miR-1:39-59]

--               gc     ---   a 
  cauacuucuuuauau  ccaua   ugg c
  |||||||||||||||  |||||   ||| c
  GUAUGAAGAAAUGUA  GGUau   auc u
AU               -A     cga   g 

>cfa-mir-124-3 (-22.20)   [cfa-miR-124:38-58]

--        a   ga        uaaug 
  guguucac gcg  ccuugauu     u
  |||||||| |||  ||||||||      
  CGUAAGUG CGC  GGAAUuaa     c
AC        G   AC        cauac 

>cfa-mir-124-1 (-22.12)   [cfa-miR-124:39-59]

--        a   ga        uaaau 
  guguucac gcg  ccuugauu     g
  |||||||| |||  ||||||||     u
  CGUAAGUG CGC  GGAAUuaa     c
AC        G   AC        cauac 

>cfa-mir-320 (-36.80)   [cfa-miR-320:33-54]

--        uu       c      g 
  gccuucuc  cccgguu uucccg a
  ||||||||  ||||||| ||||||  
  CGGGAGAG  GGGUCGA AAgggc g
AG        UU       A      u 

>cfa-mir-130b (-20.60)   [cfa-miR-130b:39-60]

--a       cc         a  guggg  g 
   cucuuuc  uguugcacu cu     cc c
   |||||||  ||||||||| ||     ||  
   GGGAAAG  GUAACGUGA ga     gg u
UAC       UA         C  ----a  g 

>cfa-mir-185 (-28.30)   [cfa-miR-185:1-22]

--U    A     G         Au  uc 
   GGAG GAAAG CAGUUCCUG  gg  c
   |||| ||||| |||||||||  ||   
   ucuc cuuuc gucggggac  cc  c
ugg    -     g         -c  uc 

>cfa-mir-1306 (-23.70)   [cfa-miR-1306:1-21]

C    U  CCU  A        guga   a 
 CACC CC   GC AACGUCCa    ugc g
 |||| ||   || ||||||||    |||  
 gugg gg   cg uugcaggu    aug a
-    u  ucu  g        ---a   g 

>cfa-mir-196a-2 (-28.50)   [cfa-miR-196a:1-22]

--           A          a ug   
  UAGGUAGUUUC UGUUGUUGGG u  ag 
  ||||||||||| |||||||||| |  | u
  guccgucaaag acaacggcuc a  uu 
ga           a          a gu   

>cfa-mir-148b (-18.80)   [cfa-miR-148b:40-61]

--          u  a    ca    gugg u 
  gaaguucugu au cacu  ggcu    c c
  |||||||||| || ||||  ||||    | u
  UUUCAAGACA UA GUGA  CUga    g c
UG          C  C    --    --aa u 

>cfa-mir-200c (-28.10)   [cfa-miR-200c:41-63]

--    -      a        u   u   gg 
  cguc uuaccc gcaguguu ggg gcu  u
  |||| |||||| |||||||| ||| |||  u
  GUAG AAUGGG CGUCAUAA cuc uga  g
AG    U      C        U   -   gg 

>cfa-mir-1307 (-23.04)   [cfa-miR-1307:39-60]

--       -a  u  a   gc   ucuaug 
  cgaccgg  cc cg ccg  ucg      u
  |||||||  || || |||  |||       
  GCUGGCU  GG GC GGC  Agc      u
GU       GC  U  -   UC   uaaccg 

>cfa-mir-107 (-22.10)   [cfa-miR-107:38-58]

--    u  u           c   u   a 
  agcu cu uacaguguugc uug ggc u
  |||| || ||||||||||| ||| ||| g
  UCGG GA AUGUUACGACG Aac uug g
UA    -  C           -   -   a 

>cfa-mir-146b (-32.50)   [cfa-miR-146b:1-22]

--UG        A    A        ga  u 
    AGAACUGA UUCC UAGGCUgu  gc u
    |||||||| |||| ||||||||  ||  
    ucuugacu aggg auccgaca  cg g
gugg        c    -        aa  a 

>cfa-mir-124-2 (-22.30)   [cfa-miR-124:37-57]

--        a   ga        uaau 
  guguucac gcg  ccuugauu    g
  |||||||| |||  ||||||||    u
  CGUAAGUG CGC  GGAAUuaa    c
AC        G   AC        caua 

>cfa-mir-99a-1 (-27.20)   [cfa-miR-99a:1-21]

--A         UC   U      g  aa 
   ACCCGUAGA  CGA CUUGUg ug  g
   |||||||||  ||| |||||| ||  u
   uggguaucu  gcu gaacac gc  g
guc         uc   c      g  ag 

>cfa-let-7c (-21.90)   [cfa-let-7c:1-22]

--U   G   U             ua  g ua a 
   GAG UAG AGGUUGUAUGGUU  ga u  c c
   ||| ||| |||||||||||||  || |  | c
   uuc auc uccaacaugucaa  uu a  g c
ccu   g   u             --  g gg u 

>cfa-mir-125b-2 (-25.50)   [cfa-miR-125b:1-22]

--UC  UG   C   A        -gg   u 
    CC  AGA CCU ACUUGUGA   uau u
    ||  ||| ||| ||||||||   |||  
    gg  ucu gga ugaacacu   aug u
ucca  gu   c   c        aca   a 

>cfa-mir-155 (-23.52)   [cfa-miR-155:1-23]

--          U    A        uuuac 
  UUAAUGCUAA CGUG UAGGGGUu     c
  |||||||||| |||| ||||||||     u
  aauuacgauu guac auccucag     c
ac          -    -        ucagc 

>cfa-mir-218-1 (-28.40)   [cfa-miR-218:1-21]

--UU         CU        gg    -  g 
    GUGCUUGAU  AACCAUGU  uugc ca g
    |||||||||  ||||||||  |||| ||  
    cacgaacug  uugguaca  aaug gu u
guac         cc        -a    a  a 

>cfa-mir-574 (-30.90)   [cfa-miR-574:37-58]

uga u                 ug  gc 
   g gugugugugugagugug  uc  u
   | |||||||||||||||||  ||   
   C CACACACGUACUCGCAC  gg  c
ACA C                 cu  gc 

>cfa-mir-9-2 (-26.00)   [cfa-miR-9:1-23]

--UC               G      ug a 
    UUUGGUUAUCUAGCU UAUGAg  u u
    ||||||||||||||| ||||||  |  
    aagccaauagaucga auacuu  g u
auga               a      cu g 

>cfa-mir-28 (-29.50)   [cfa-miR-28:41-62]

--a                u  ----    gcc 
   aggagcucacagucua ug    aguu   u
   |||||||||||||||| ||    ||||    
   UCCUCGAGUGUUAGAU AC    ucag   u
AGG                C  ccuu    ucu 

>cfa-mir-15b (-19.10)   [cfa-miR-15b:1-20]

--U       C  C      UA   a  ac 
   AGCAGCA AU AUGGUU  cau cu  a
   ||||||| || ||||||  ||| ||  g
   ucgucgu ua uacuaa  gua ga  u
auc       u  u      gc   -  ac 

>cfa-mir-16-2 (-23.10)   [cfa-miR-16:1-22]

--U         UA        C  ag   aau 
   AGCAGCACG  AAUAUUGG Gu  uga   a
   |||||||||  |||||||| ||  |||    
   ucgucgugu  uuauaacc ca  auu   a
auu         ua        a  -a   aaa 

>cfa-mir-7-2 (-19.80)   [cfa-miR-7:1-23]

--   A     A U     U       ucuca 
  UGG AGACU G GAUUU GUUGUug     c
  ||| ||||| | ||||| |||||||      
  acc ucuga c cugaa caacaac     u
ac   g     c -     -       cuacg 

>cfa-mir-9-3 (-28.40)   [cfa-miR-9:1-23]

-UC               G     gu  ca 
   UUUGGUUAUCUAGCU UAUGA  gc  c
   ||||||||||||||| |||||  ||   
   aagccaauagaucga auacu  cg  a
uga               a     gc  ag 

>cfa-mir-1839 (-20.96)   [cfa-miR-1839:7-28]

--aaggaaAA       A  AC        uuagca 
          GGUAGAU GA  AGGUCUUG      a
          ||||||| ||  ||||||||      a
          ccaucua uu  uccagaac      a
uuaacgacaa       a  ca        uuaaau 

>cfa-mir-26b (-23.00)   [cfa-miR-26b:1-22]

-U         UC           u ug 
  UCAAGUAAU  AGGAUAGGUUg g  c
  |||||||||  ||||||||||| |   
  gguucauua  ucuuguccgac c  u
uc         cc           - ug 

>cfa-mir-1840 (-34.90)   [cfa-miR-1840:38-57]

-- ua    g             ----  u 
  u  gggc cgucacgugacgg    gc c
  |  |||| |||||||||||||    || g
  G  UCCG GCAGUGCACUgcc    cg u
GC GC    G             gccu  c 

>cfa-mir-664 (-19.20)   [cfa-miR-664:1-22]

--      A   --A      -UU      aa 
  UGGGCU GGA   AAAUGA   GGAuaa  a
  |||||| |||   ||||||   ||||||   
  auccga ccu   uuuacu   cuuauu  a
ac      c   cua      uau      au 

>cfa-mir-194 (-27.40)   [cfa-miR-194:1-22]

--U         A     -  UG     u 
   GUAACAGCA CUCCA UG  GAuug g
   ||||||||| ||||| ||  ||||| u
   cauugucgu gaggu ac  uuaac g
uuu         a     g  cu     c 

>cfa-mir-143 (-25.80)   [cfa-miR-143:35-55]

-- g         g      u  -  ag 
  g ugcagugcu caucuc gg uc  u
  | ||||||||| |||||| || ||   
  C AUGUCACGA GUAGAG cu ag  u
CU G         A      U  g  gg 

>cfa-mir-378 (-33.50)   [cfa-miR-378:39-60]

--  c              ugu      ccu 
  cu cugacuccaggucc   guguua   c
  || ||||||||||||||   ||||||    
  GA GACUGAGGUUCAGG   CAcgau   g
CG  A              --U      aaa 

>cfa-mir-146a (-23.70)   [cfa-miR-146a:1-22]

--U            C        g  uc 
   GAGAACUGAAUU CAUGGGUU ug  a
   |||||||||||| |||||||| ||  g
   uucuugacuuga guguccag ac  u
gac            a        -  ug 

>cfa-mir-1271 (-31.30)   [cfa-miR-1271:1-20]

--        C     A           a 
  CUUGGCAC UAGUA GCACUcaguaa u
  |||||||| ||||| |||||||||||  
  ggaccgug aucgu cgugaguuguu a
ac        u     c           c 

>cfa-mir-1841 (-24.16)   [cfa-miR-1841:1-22]

--AGA      CU      CA    ugaagg 
     GGAAAG  GGACGG  AGCc      g
     ||||||  ||||||  ||||      a
     ccuuuc  ccugcc  ucgg      a
ccgaa      -u      --    uggaag 

>cfa-mir-218-2 (-25.40)   [cfa-miR-218:1-21]

--UU         CU        gguggaacga  g 
    GUGCUUGAU  AACCAUGU          ug a
    |||||||||  ||||||||          ||  
    cacgaacug  uugguaca          gc a
gcgc         uc        --------ag  a 

>cfa-mir-103-1 (-24.40)   [cfa-miR-103:40-62]

--uc    u  u           c   u g a 
    ggcu cu uacagugcugc uug u c u
    |||| || ||||||||||| ||| | |  
    UCGG GA AUGUUACGACG Aac a g a
AGUA    -  C           -   u g u 

>cfa-mir-328 (-38.70)   [cfa-miR-328:42-63]

--a         ga     u     a aaa  g 
   ggggggcag  agggc caggg g   gu u
   |||||||||  ||||| ||||| |   ||  
   CUUCCCGUC  UCCCG GUCcc c   cg g
UGC         UC     -     - -ga  u 

>cfa-mir-140 (-32.20)   [cfa-miR-140:41-61]

-ca             a       uu   uc 
   gugguuuuacccu ugguagg  acg  a
   ||||||||||||| |||||||  |||   
   CACCAAGAUGGGA ACCAucu  ugu  u
AGG             C       --   cg 

>cfa-mir-34a (-27.07)   [cfa-miR-34a:1-22]

--U        -   A          gugaguaa 
   GGCAGUGU CUU GCUGGUUGUu        u
   |||||||| ||| ||||||||||         
   ccgucaua gaa cgacuaacga        a
auc        u   -          aggaagug 

>cfa-mir-99a-2 (-20.40)   [cfa-miR-99a:1-21]

--A   CG    UC   U      g  au 
   ACC  UAGA  CGA CUUGUg ug  a
   |||  ||||  ||| |||||| ||   
   ugg  aucu  guu gaacac ac  g
gua   au    gu   c      -  cu 

>cfa-mir-125b-1 (-25.80)   [cfa-miR-125b:1-22]

-UC  UG   C           Au     c 
   CC  AGA CCUAACUUGUG  guuua c
   ||  ||| |||||||||||  ||||| g
   gg  ucu ggauugggcac  uaaau u
cga  gu   c           -c     u 

>cfa-mir-497 (-26.60)   [cfa-miR-497:1-21]

-------C    G    C         U  --   ac 
        AGCA CACA UGUGGUUUG ac  ggu  u
        |||| |||| ||||||||| ||  |||   
        uugu gugu acaccagac ug  ccg  g
gaguggga    g    c         c  ca   gu 

>cfa-mir-195 (-30.40)   [cfa-miR-195:1-22]

--U          -A         --   ggg 
   AGCAGCACAG  AAUAUUGGC  Acu   a
   ||||||||||  |||||||||  |||    
   ucgucguguc  uuauaaccg  uga   a
auc          gg         uc   gag 

>cfa-mir-34c (-22.00)   [cfa-miR-34c:1-23]

--A   A    A     C      C  a 
   GGC GUGU GUUAG UGAUUG ua u
   ||| |||| ||||| |||||| ||  
   ccg caca caauc acuaac au a
gga   g    c     -      c  g 

>cfa-mir-101-1 (-26.70)   [cfa-miR-101:36-55]

--                a    gucca 
  aguuaucacagugcug ugcu     u
  |||||||||||||||| ||||      
  UCAAUAGUGUCAUGAC AUgg     u
AG                -    aaauc 

>cfa-mir-186 (-25.50)   [cfa-miR-186:1-22]

--          U     U      ucu  uu 
  CAAAGAAUUC CCUUU GGGCUu   ga  u
  |||||||||| ||||| ||||||   ||   
  guuuuuuaag ggaaa cccgaa   uu  u
gg          u     -      --u  ua 

>cfa-mir-106b (-27.20)   [cfa-miR-106b:1-21]

--UA       G       A -AUa    u 
    AAGUGCU ACAGUGC G    gcgg c
    ||||||| ||||||| |    ||||  
    uucaugg ugucacg c    ugcc c
gucg       g       c aucg    u 

>cfa-mir-93 (-22.40)   [cfa-miR-93:1-23]

--CA       -     U    G   u  g u 
    AAGUGCU GUUCG GCAG UAG gu a u
    ||||||| ||||| |||| ||| || | a
    uucacga cgagu cguc auc ca u c
gccc       u     -    -   -  g c 

>cfa-mir-25 (-25.40)   [cfa-miR-25:38-59]

--    g     uu g     -   u  ac 
  aggc gagac  g gcaau ugc gg  g
  |||| |||||  | ||||| ||| ||   
  UCUG CUCUG  C CGUUA gcg cc  c
AG    G     UU A     C   c  gu 

>cfa-mir-197 (-29.40)   [cfa-miR-197:40-61]

--c    a       ca    ga   -   a 
   gggu gagaggg  gugg  ggu aag g
   |||| |||||||  ||||  ||| |||  
   CCCA CUCUUCC  CACU  cca uuc c
CGA    C       AC    Uc   c   u 

>cfa-mir-193b (-25.90)   [cfa-miR-193b:1-22]

--    GU    A    G  A  Ag  ua 
  CGGG  UUUG GGGC AG UG  uu  u
  ||||  |||| |||| || ||  ||  g
  gccc  aaac cccg uc ac  ag  u
uc    ug    a    g  a  cu  uu 

>cfa-mir-590 (-18.00)   [cfa-miR-590:41-61]

--g       u       g     ---   ga 
   agcuuau cauaaaa uacag   uau  u
   ||||||| ||||||| |||||   |||   
   UCGAAUA GUAUUUU AUguc   aug  c
UGA       U       A     caa   ac 

>cfa-mir-1842 (-25.00)   [cfa-miR-1842:1-21]

--UG      CG     A      g  ggg 
    GCUCUG  AGGUC GCUCAa gu   u
    ||||||  ||||| |||||| ||    
    cgggac  uccgg cgaguu ua   c
guug      ug     a      a  ggu 

>cfa-mir-137 (-21.60)   [cfa-miR-137:35-55]

-- g           ug a     -  g 
  g guauucuuggg  g uaaua cg a
  | |||||||||||  | ||||| || u
  C CAUAAGAAUUC  U AUUgu gc u
UG G           GU -     u  a 

>cfa-mir-1-2 (-18.64)   [cfa-miR-1:39-59]

--               ac     ugaaca 
  cauacuucuuuaugu  ccaua      u
  |||||||||||||||  |||||       
  GUAUGAAGAAAUGUA  GGUau      a
AU               -A     cguaac 

>cfa-mir-92b (-32.12)   [cfa-miR-92b:42-63]

-a   a       c            uucuc 
  ggg cgggacg ggugcaguguug     u
  ||| ||||||| ||||||||||||     c
  UCC GCCCUGC UCACGUUAUaac     c
CC   G       -            cgccc 

>cfa-mir-350 (-13.82)   [cfa-miR-350:36-57]

---    cac c      -     gugaa 
   agug   g gcuuug ggaca     g
   ||||   | |||||| |||||     a
   UCAC   C CGAAAC CUUgu     a
UUU    AUA C      A     aauaa 

>cfa-mir-29b-2 (-24.24)   [cfa-miR-29b:44-66]

--a          c      g  u    uuuucc 
   gcugguuuca auggug cu agau      a
   |||||||||| |||||| || ||||       
   UGACUAAAGU UACCAC GA Ucua      u
UUG          U      -  -    uguuuc 

>cfa-mir-29c-1 (-22.40)   [cfa-miR-29c:37-58]

--         ucc       ---     u 
  accgauuuc   ugguguu   cagag c
  |||||||||   |||||||   ||||| u
  UGGCUAAAG   ACCACGA   guuuu g
AU         UUU       Ucu     u 

>cfa-mir-1843 (-19.50)   [cfa-miR-1843:1-22]

--AC      -UCU U   U       ga a 
    UGGAGG    C GUC GGCUUag  c g
    ||||||    | ||| |||||||  |  
    accucc    g uag cugaauc  g c
acau      ccuu c   u       -g u 

>cfa-mir-199-2 (-25.20)   [cfa-miR-199:39-59]

--       u        c   --uca  ac 
  ccagugu cagacuac ugu     gg  a
  ||||||| |||||||| |||     ||   
  GGUUACA GUCUGAUG ACA     cc  a
UU       C        -   uguug  gu 

>cfa-mir-9-1 (-26.30)   [cfa-miR-9:1-23]

--UC               G      u  ug 
    UUUGGUUAUCUAGCU UAUGAg gg  u
    ||||||||||||||| |||||| ||  g
    aagccaauagaucga auacuu cu  g
auga               a      -  ga 

>cfa-mir-181a-1 (-22.00)   [cfa-miR-181a:1-22]

--A   U      CU       A    g  au 
   ACA UCAACG  GUCGGUG Guuu ga  u
   ||| ||||||  ||||||| |||| ||  a
   ugu aguugc  cagcuac caaa cu  a
cca   u      --       -    a  aa 

>cfa-mir-181b-1 (-23.80)   [cfa-miR-181b:1-20]

--AA         CUG          gaa  g 
    CAUUCAUUG   UCGGUGgguu   cu u
    |||||||||   ||||||||||   ||  
    guaaguaac   agucacucga   gg g
caac         --a          aca  u 

>cfa-mir-342 (-24.50)   [cfa-miR-342:41-63]

--      --ua      auuga      ugg a 
  gggugc    ucugug     gggaca   c a
  ||||||    ||||||     ||||||   | a
  CCCACG    AGACAC     CUCUgu   g u
UG      CUAA      ----A      uaa a 

>cfa-mir-345 (-22.70)   [cfa-miR-345:40-60]

--ugcu          c   u     ug u 
      gacucuuagu cag gcucg  a g
      |||||||||| ||| |||||  |  
      CUGGGGAUCA GUC cgggu  u g
GGAGGU          A   C     gg c 

>cfa-mir-493 (-24.50)   [cfa-miR-493:41-61]

--u                    cauuc  u 
   guacaugguaggcuuucauu     gu u
   ||||||||||||||||||||     ||  
   CGUGUGUCAUCUGGAAGUgg     ca g
GAC                    -cuua  c 

>cfa-mir-433 (-27.60)   [cfa-miR-433:53-74]

--ua   u           u   --------  g     cu 
    cgg gagccugucau auu        ca agagg  a
    ||| ||||||||||| |||        || |||||   
    GCU CUCGGGUAGUA UAg        gu ucucc  g
UGUG   C           C   gaagaguu  g     ua 

>cfa-mir-127 (-28.50)   [cfa-miR-127:39-60]

ccu   g         g  c      --  a 
   gcu aagcucaga gg ucugau  uc g
   ||| ||||||||| || ||||||  || a
   CGG UUCGAGUCU CC AGGCUa  ag a
--U   -         G  U      cu  a 

>cfa-mir-136 (-20.50)   [cfa-miR-136:1-23]

--    C     UUU          uuc 
  ACUC AUUUG   UGAUGAUGGA   u
  |||| |||||   ||||||||||   u
  ugag uaaac   gcuacuaccu   a
uc    -     ucu          cgc 

>cfa-mir-379 (-21.90)   [cfa-miR-379:1-21]

--    A       GA       - uuugu 
  UGGU GACUAUG  ACGUAGG c     g
  |||| |||||||  ||||||| |      
  auca cugguac  uguaucc g     a
ca    c       aa       a uuuuu 

>cfa-mir-411 (-20.60)   [cfa-miR-411:1-22]

--A    A      A A       - uuu 
   UAGU GACCGU U GCGUACG c   a
   |||| |||||| | ||||||| |   u
   auca cuggca a uguaugc g   c
cca    c      c a       a ugu 

>cfa-mir-380 (-20.60)   [cfa-miR-380:37-57]

-aug  u       ga       c  gc 
    gu gaccaua  acaugcg ua  u
    || |||||||  ||||||| ||   
    CA CUGGUAU  UGUAUgc gu  c
UCUG  C       AA       u  au 

>cfa-mir-323 (-21.90)   [cfa-miR-323:36-56]

--    g u     gcgc  u    uua 
  aggu g ccgug    gu cgcu   u
  |||| | |||||    || ||||    
  UCCA C GGCAC    CA gcgg   u
UC    G U     AUUA  C    uau 

>cfa-mir-329a (-27.30)   [cfa-miR-329a:1-23]

--       UU      UUC      u   a 
  AGAGGUU  CUGGGU   UGUUUc uuc u
  |||||||  ||||||   |||||| |||  
  ucuccaa  gaccca   acaaag agg g
uu       uu      --c      u   a 

>cfa-mir-543 (-20.10)   [cfa-miR-543:37-58]

--     u  -     ---u    u    uu 
  gaagu gc ccgug    uuuu ucgc  u
  ||||| || |||||    |||| ||||  a
  CUUCA CG GGCGC    AAAg agug  u
UU     -  U     UUAC    c    uu 

>cfa-mir-495 (-20.00)   [cfa-miR-495:37-58]

--     u  -       au     - uug 
  gaagu gc ccguguu  uuucg c   a
  ||||| || |||||||  ||||| |   u
  CUUCA CG GGUACAA  AAAgc g   a
UU     -  U       AC     c ugc 

>cfa-mir-376a-3 (-20.90)   [cfa-miR-376a:39-59]

-g      g     u     -uuu  ggga 
  guggau uuccu cuaug    ac    u
  |||||| ||||| |||||    ||     
  CACCUA AAGGA GAUAC    ug    u
UG      A     -     UAau  auau 

>cfa-mir-376a-2 (-22.30)   [cfa-miR-376a:38-58]

--  a         u         --   g 
  gu gauuuuccu cuaugauua  cgu u
  || ||||||||| |||||||||  ||| u
  CA CUAAAAGGA GAUACUAau  gua u
UG  C         -         ug   g 

>cfa-mir-376a-1 (-16.40)   [cfa-miR-376a:38-58]

--  a    c    u      --gua   u 
  gu gauu uccu cuauga     cau a
  || |||| |||| ||||||     ||| u
  CA CUAA AGGA GAUACU     gua u
UG  C    A    -      Aauua   u 

>cfa-mir-487b (-20.60)   [cfa-miR-487b:37-58]

--    uuau      c u     uuuua 
  gugg    cccugu c guucg     c
  ||||    |||||| | |||||      
  CACC    GGGACA G UAAgc     u
UU    UACU      U C     uguac 

>cfa-mir-382 (-22.90)   [cfa-miR-382:36-57]

---aa           ug      - uuu 
     guuguucgugg  gauucg c   a
     |||||||||||  |||||| |   c
     CAACAGGCACU  CUAAgc g   u
UUUCA           UA      a uau 

>cfa-mir-485 (-25.30)   [cfa-miR-485:1-23]

--     CU       -    A    auuc 
  AGAGG  GGCCGUG AUGA UUCG    a
  |||||  ||||||| |||| ||||    u
  ucucc  ucggcac uacu gagc    c
uc     uc       a    -    gaaa 

>cfa-mir-409 (-18.70)   [cfa-miR-409:34-54]

--a    acc        -    - auc 
   gguu   cgagcaac uuug c   u
   ||||   |||||||| |||| |    
   CCAA   GCUCGUUG AAgc g   g
UCC    GUU        U    a cag 

>cfa-mir-369 (-16.50)   [cfa-miR-369:36-56]

--  uu         ua      cuuua 
  ag  cgaccgugu  uauucg     u
  ||  |||||||||  ||||||      
  UC  GUUGGUACA  AUAAgc     u
UU  UG         UA      uucag 

>cfa-mir-410 (-22.00)   [cfa-miR-410:36-56]

--    ug      a  a     - uuu 
  aggu  ucugug ug guucg c   a
  ||||  |||||| || ||||| |   u
  UCCG  AGACAC AU UAAgc g   u
UG    GU      A  A     c uaa 

>cfa-mir-219-2 (-25.20)   [cfa-miR-219:1-21] [cfa-miR-219*:44-65]

--U   U     AA           uac a  c 
   GAU GUCCA  CGCAAUUCUug   g gu u
   ||| |||||  |||||||||||   | || g
   CUA CAGGU  GUGUUAAGAgc   c cg c
UGU   -     CG           caa -  g 

>cfa-mir-199-3 (-22.60)   [cfa-miR-199:39-59]

--       u       u    u  ----  a 
  ccagugu uagacua cugu ca    gg c
  ||||||| ||||||| |||| ||    ||  
  GGUUACA GUCUGAU GACA gu    cc u
UU       C       -    u  uaaa  c 

>cfa-mir-181a-2 (-23.20)   [cfa-miR-181a:1-22]

--A   U      CU       A    ggga 
   ACA UCAACG  GUCGGUG Guuu    u
   ||| ||||||  ||||||| ||||    u
   ugu aguugc  cagccac caaa    u
cca   c      --       -    aaag 

>cfa-mir-181b-2 (-24.50)   [cfa-miR-181b:1-20]

--AA         CU           u  gu 
    CAUUCAUUG  GUCGGUGgguu ga  c
    |||||||||  ||||||||||| ||  u
    guaaguaac  uagucacucaa cu  g
aaac         --           -  aa 

>cfa-mir-126 (-23.00)   [cfa-miR-126:1-21]

--           U       C cug   c 
  CAUUAUUACUU UGGUACG G   uga a
  ||||||||||| ||||||| |   |||  
  guaauaaugag gccaugc c   acu c
gc           u       u -aa   u 

>cfa-mir-212 (-24.90)   [cfa-miR-212:1-23]

--A  U     CU      C      ccc     
   CC UGGCU  AGACUG UUACUg   gggc 
   || |||||  |||||| ||||||   ||| c
   gg acuga  ucugac aaugac   cccg 
acc  c     cc      -      --u     

>cfa-mir-132 (-28.30)   [cfa-miR-132:38-60]

--a         uuc          -g     
   accguggcu   gauuguuacu  uggg 
   |||||||||   ||||||||||  ||| a
   UGGUACCGA   CUGACAAUgg  gcca 
CGC         CAU          ag     

>cfa-mir-22 (-25.90)   [cfa-miR-22:39-60]

--          -     a      u  ccu 
  aguucuucag uggca gcuuua gu   g
  |||||||||| ||||| |||||| ||   a
  UCAAGAAGUU ACCGU CGAAau cg   c
UG          G     -      -  acc 

>cfa-mir-144 (-20.50)   [cfa-miR-144:39-60]

-a  -        a         a  uug g 
  gg auaucauc uauacugua gu   c a
  || |||||||| ||||||||| ||   | c
  UC UGUAGUAG AUAUGACAU ca   g a
GA  A        -         -  -ua a 

>cfa-mir-193a (-25.80)   [cfa-miR-193a:1-22]

--    U     CG   G  A    ggu 
  UGGG CUUUG  GGC AG UGAg   g
  |||| |||||  ||| || ||||    
  accc gaaac  ccg uc acuu   u
ug    u     au   g  a    ggc 

>cfa-mir-142 (-27.50)   [cfa-miR-142:1-21]

--C           A         uaa ag a 
   CCAUAAAGUAG AAGCACUAc   c  c c
   ||||||||||| |||||||||   |  |  
   gguauuucauc uuugugaug   g  g u
gua           c         -ug ga g 

>cfa-mir-10 (-22.49)   [cfa-miR-10:1-22]

-UAC   G     C          uaaggaa 
    CCU UAGAU CGAAUUUGUg       u
    ||| ||||| ||||||||||        
    ggg aucua gcuuaaacac       u
auaa   g     u          ugguguu 

>cfa-mir-152 (-22.40)   [cfa-miR-152:39-59]

--         g  a    cc    cgg   c 
  agguucugu au cacu  gacu   gcu u
  ||||||||| || ||||  ||||   |||  
  UUCAAGACA UA GUGA  CUga   cga g
GG         G  C    --    ---   g 

>cfa-mir-338 (-22.12)   [cfa-miR-338:37-59]

--     u   -         -   gauga 
  aacaa auc cuggugcug agu     c
  ||||| ||| ||||||||| |||     a
  UUGUU UAG GACUACGAC Uca     c
AG     U   U         C   acgua 

>cfa-mir-1844 (-26.30)   [cfa-miR-1844:1-20]

--A      C  A     U     uuca  c 
   GGACUA GG CGGGC GAGcu    gg u
   |||||| || ||||| |||||    ||  
   cuuggu uc gcccg cucga    cc c
acg      c  a     u     --ca  c 

>cfa-mir-21 (-24.90)   [cfa-miR-21:1-22]

--         A     A     A    u a 
  UAGCUUAUC GACUG UGUUG cugu g a
  ||||||||| ||||| ||||| |||| | u
  gucggguag cugac acaac ggua c c
cu         -     g     -    - u 

>cfa-mir-423a (-28.80)   [cfa-miR-423a:1-23]

--        -AG   G    A     cua 
  UGAGGGGC   AGA CGAG CUUUu   u
  ||||||||   ||| |||| |||||   u
  acuccccg   ucu gcuc gaaaa   u
ug        gag   g    -     ccu 

>cfa-mir-652 (-34.10)   [cfa-miR-652:42-63]

--          gagag           ca  g 
  acaacccuag     ggugccauuca  ua a
  ||||||||||     |||||||||||  || c
  UGUUGGGAUC     CCGCGGUAAgu  au u
CG          ----A           ua  a 

>cfa-mir-224 (-26.60)   [cfa-miR-224:1-22]

--CA         U   U      a u   ug  u 
    AGUCACUAG GGU CCGUUU g aga  au a
    ||||||||| ||| |||||| | |||  || u
    ucagugauc ccg gguaaa c uuu  ua g
aacg         -   u      a -   gu  c 

>cfa-mir-424 (-25.30)   [cfa-miR-424:37-57]

--      aa            agu   uu 
  agcagc  uucauguuuuga   gcu  a
  ||||||  ||||||||||||   |||   
  UCGUCG  GAGUGCAAAACu   ugg  a
UA      CG            ---   ua 

>cfa-mir-503 (-33.90)   [cfa-miR-503:1-20]

--UA                 G   u g  a 
    GCAGCGGGAACAGUACU cag g gc a
    ||||||||||||||||| ||| | || u
    cgucgucuuuguuauga guc u ug c
ggcc                 g   u g  g 

>cfa-mir-542 (-22.40)   [cfa-miR-542:38-59]

--    gg    uca         -a   c 
  ucgg  auca   ugucacgag  uac a
  ||||  ||||   |||||||||  |||  
  AGUC  UAGU   ACAGUGUuc  gug c
AA    AA    UAG         ac   u 

>cfa-mir-450b (-18.60)   [cfa-miR-450b:1-21]

--UUU     U        G    ug aa 
     UGCAA AUGUUCCU AAUa  u  u
     ||||| |||||||| ||||  |  a
     acguu uacaaggg uuau  g  u
uaccu     u        -    gu aa 

>cfa-mir-106a (-20.50)   [cfa-miR-106a:1-22]

---A        A  G     ---GUA  a 
    AAGUGCUU CA UGCAG      Gc u
    |||||||| || |||||      || u
    uucacgaa gu acguc      cg c
auuc        c  a     aucuag  u 

>cfa-mir-19b-2 (-23.50)   [cfa-miR-19b:43-64]

--        -  -      uuu    gua     g 
  guuuugca gg uuugca   cagc   cuugu c
  |||||||| || ||||||   ||||   |||||  
  CAAAACGU CC AAACGU   GUcg   ggaua a
GU        A  U      ---    ---     u 

>cfa-mir-92a-2 (-25.30)   [cfa-miR-92a:40-61]

--    g     uu   g  u     -      
  gggu gggau  gug ca uacuu guguu 
  |||| |||||  ||| || ||||| |||| c
  UCCG CCCUG  CAC GU AUgaa uauac 
UG    G     UU   -  U     a      

>cfa-mir-363 (-22.57)   [cfa-miR-363:45-67]

--u         ca  a         gaugagua 
   cggguggau  cg ugcaauuuu        u
   |||||||||  || |||||||||         
   GUCUACCUA  GC ACGUUAAaa        a
AAU         UG  -         agaggaua 

>cfa-mir-361 (-23.10)   [cfa-miR-361:1-22]

--UU         --U  A    U    aaaa 
    AUCAGAAUC   CC GGGG ACuu    u
    |||||||||   || |||| ||||    u
    uagucuuag   gg cccc ugaa    u
cguu         ugu  a    c    aaag 

>cfa-mir-384 (-18.60)   [cfa-miR-384:42-63]

--   a       c     c    -ug    a 
  ugu aacaauu cuagg aaug   uaua u
  ||| ||||||| ||||| ||||   |||| g
  ACA UUGUUAA GAUCC UUAc   augu u
UA   C       A     -    uga    u 

>cfa-mir-374a (-27.90)   [cfa-miR-374a:1-21]

--               A       u 
  UUAUAAUACAACCUG UAAGUgu g
  ||||||||||||||| |||||||  
  aauguuauguuggac auucacg u
uu               c       a 

>cfa-mir-374b (-25.00)   [cfa-miR-374b:1-22]

--AU             C       c 
    AUAAUACAACCUG UAAGUGu c
    ||||||||||||| |||||||  
    uauuauguuggac auucacg u
uuac             u       a 

>cfa-mir-421 (-17.00)   [cfa-miR-421:35-56]

--    uua            a   aaa 
  cuca   aauguuuguuga uga   a
  ||||   |||||||||||| |||   a
  GGGU   UUACAGACAACU Acu   u
GC    UAA            -   aag 

>cfa-mir-98 (-31.40)   [cfa-miR-98:1-22]

--U                 U    ---------      aggg 
   GAGGUAGUAAGUUGUAU GUUg         uggggu    a
   ||||||||||||||||| ||||         ||||||    u
   uuucaucauucaacaua caau         accccg    u
ccc                 u    agaagauua      gauu 

>cfa-mir-221 (-26.20)   [cfa-miR-221:41-62]

--   ug   u         auuu    -   u 
  acc  gca acaauguag    cugu guu g
  |||  ||| |||||||||    |||| ||| u
  UGG  CGU UGUUACAUC    GAca cgg u
UU   GU   C         ----    a   g 

>cfa-mir-532 (-21.30)   [cfa-miR-532:1-22]

--  U      A    A   CCGUu    uc 
  CA GCCUUG GUGU GGA     ggua  u
  || |||||| |||| |||     ||||  u
  gu cggaac caca ccu     ccau  a
ac  u      c    c   ----c    ua 

>cfa-mir-500 (-24.30)   [cfa-miR-500:39-59]

--         uac ug    agag   uuu 
  aauccuugc   c  ggug    ugc   c
  |||||||||   |  ||||    |||   u
  UUAGGAACG   G  CCAC    acg   g
UC         --- GU    -GUA   uaa 

>cfa-mir-660 (-19.90)   [cfa-miR-660:1-22]

---UAC    U      C    U   gaau 
      CCAU GCAUAU GGAG UGu    u
      |||| |||||| |||| |||    c
      ggua cgugug ccuc acg    u
acauua    -      u    c   aaac 

>cfa-mir-502 (-27.70)   [cfa-miR-502:38-59]

--         uau ug     uag   ugu 
  aauccuugc   c  ggugc   ugc   c
  |||||||||   |  |||||   |||   u
  UUAGGAACG   G  CCACG   Acg   c
AC         --- GU     -UA   uaa 

>cfa-mir-676 (-19.80)   [cfa-miR-676:1-21]

--   U       C     UC   gaauu 
  CUC UCAAUCU AGGAC  GCa     a
  ||| ||||||| |||||  |||      
  gag gguugga uccug  cgu     a
uu   u       a     -c   aaggu 

>cfa-let-7j (-22.02)   [cfa-let-7j:1-23]

-UG     GUA             -auaaaa  a 
   AGGUA   GAGUGCAGUAGUU       gg a
   |||||   |||||||||||||       || u
   uccau   uucaugucguuag       uc c
ucg     -ac             aucgagg  u 

>hsa-mir-320d-1 (-20.10)   [hsa-miR-320d:30-48]

--      u       c   c  a 
  uucucg cccaguu uuc ca a
  |||||| ||||||| ||| ||  
  GAGAGU GGGUCGA AAg gu g
AG      U       A   a  u 

>hsa-mir-320c-2 (-27.50)   [hsa-miR-320c:31-50]

--      uu       c     ag 
  cuucuc  uccaguu uuccc  a
  ||||||  ||||||| |||||   
  GGAGAG  GGGUCGA AAggg  a
UG      UU       A     uu 

>hsa-mir-320d-2 (-23.10)   [hsa-miR-320d:30-48]

--     uu       c      g 
  uucuc  cccaguu uucuug a
  |||||  ||||||| ||||||  
  GAGAG  GGGUCGA AAggac g
AG     UU       A      u 

>hsa-mir-1825 (-27.00)   [hsa-miR-1825:36-53]

a    cu    ug    gc   ccu 
 gaga  gggg  cugg  ucc   a
 ||||  ||||  ||||  |||   g
 CUCU  UCCC  GACC  agg   a
C    CC    GU    Uc   auc 

>hsa-mir-1826 (-31.10)   [hsa-miR-1826:1-27]

--       ----AU    A   C  -AC    Uugc     -   u 
  AUUGAUC      CGAC CUU GA   GCAA    agccc ggg u
  |||||||      |||| ||| ||   ||||    ||||| ||| c
  ugacuag      gcug gag cu   cguu    ucggg ccc c
ga       ccguuc    c   u  guc    ----     a   u 

>hsa-mir-1827 (-19.80)   [hsa-miR-1827:49-66]

--    - a  aca    u      aaag  au   a 
  ucag c gc   gccu cagccu    ca  gag a
  |||| | ||   |||| ||||||    ||  |||  
  AGUU G UG   CGGA GUcgga    gu  cuc g
UA    A A  --A    -      --aa  --   c 

>cel-mir-1828 (-25.10)   [cel-miR-1828:41-63]

--g       uu  c g         cu  gc 
   aucacuu  au g uuccggucc  cu  a
   |||||||  || | |||||||||  ||  a
   UAGUGAA  UA C AAGGUCAgg  ga  a
UGA       UU  - G         -u  aa 

>cel-mir-1829a (-14.10)   [cel-miR-1829a*:1-23] [cel-miR-1829a:39-60]

--A      C       U   U    aaaa 
   AGGGGA UUCUAAU GUU GUAa    u
   |||||| ||||||| ||| ||||    c
   UCUCUU AAGGUUA CAA Cauu    g
UUA      U       C   -    auga 

>cel-mir-1829b (-21.90)   [cel-miR-1829b:1-23]

--A  C  UC      A         a  a 
   AG GA  UUCUAG UGGUUGUAa ac u
   || ||  |||||| ||||||||| || c
   uc cu  aagguc accaacauu ug g
uua  u  uu      -         a  a 

>cel-mir-1829c (-20.20)   [cel-miR-1829c:1-23]

----A  C       A  A        aa  a 
     AG GAAAUUC AG UGGUUGUA  ac u
     || ||||||| || ||||||||  || c
     uc cuuuaag uc accaacau  ug g
cguua  u       g  -        ca  a 

>cel-mir-1830 (-35.80)   [cel-miR-1830:1-22]

--    G    A               --  -c  a 
  CGAG UUUC CGUUUUCUAGGCcac  gc  gc a
  |||| |||| |||||||||||||||  ||  || a
  gcuc aaag guaaaggauccggug  cg  cg u
cg    a    a               uu  ac  a 

>cel-mir-1832 (-36.50)   [cel-miR-1832:44-64]

--  g       aa           --g  -  u 
  ca cgauucg  cuccgcccacu   ca cc g
  || |||||||  |||||||||||   || || a
  GU GCUAAGC  GAGGCGGGUga   gu gg u
UA  A       --           aca  u  u 

>cel-mir-1833 (-47.70)   [cel-miR-1833:51-73]

--       c                  --      u 
  acgcuua uucgcaagccucgcgcgu  uuucuu u
  ||||||| ||||||||||||||||||  |||||| c
  UGUGAAU AAGCGUUCGGAGCgugcg  aaagag a
CG       A                  aa      a 

>cel-mir-1834 (-25.90)   [cel-miR-1834:37-59]

---uga       ug          -      
      cucggug  ugaucucuua ccguu 
      |||||||  |||||||||| |||| u
      GAGUUAC  ACUAGAGAau gguau 
AACCUA       CA          a      

>gga-mir-216b (-30.90)   [gga-miR-216b:16-37]

gaguca    c  -    A          C  A     ---  u  u 
      caga ug ggAA UCUCUGCAGG AA UGUGA   ug cu u
      |||| || |||| |||||||||| || |||||   || ||  
      gucu ac ucuu agagaugucc uu acacu   ac ga a
-cuacg    a  a    -          a  a     cua  -  u 

>gga-mir-1845 (-44.50)   [gga-miR-1845:52-69]

      -----uu          c      cauccc      --a  a 
gcuucu       cucuuccucc ggcgua      gccggc   gc c
||||||       |||||||||| ||||||      ||||||   || c
ugagga       gaggAGGAGG CCGCGU      CGGCCg   cg g
      caaauuu          C      ------      cua  a 

>gga-mir-214 (-49.06)   [gga-miR-214:71-91]

ggacu    guuc  a       u   u          aca        c  uaacau 
     ggcu    gg guuguca gug cugucugucu   cuugcugu ca      c
     ||||    || ||||||| ||| ||||||||||   |||||||| ||      c
     ccga    cc caacagu cac GACGGACAGA   GGGCGACA gu      a
----u    ----  -       c   u          CAA        u  ccacuc 

>gga-mir-762 (-40.10)   [gga-miR-762:48-69]

    g     ggg    gg   gca    cc     g cau 
gccc gcucc   ucuc  ccc   ccga  ggccc a   g
|||| |||||   ||||  |||   ||||  ||||| |    
cggg cgggg   GGGG  GGG   GGUU  UCGGG u   c
    a     --A    -A   AGG    --     G cgu 

>gga-mir-124a-2 (-37.90)   [gga-miR-124a:53-74]

---------cc   - cu      - c        a   ga        uaaug 
           gag c  cucucu g guguucac gcg  ccuugauu     u
           ||| |  |||||| | |||||||| |||  ||||||||      
           cuc g  gagaga C CGUAAGUG CGC  GGAAUUaa     c
uuacuucgaca   c ag      A -        G   AC        cauac 

>ssc-mir-15a (-26.00)   [ssc-miR-15a:12-32]

uuggaguaaa UA        UA          ga  u 
          g  GCAGCACA  AUGGUUUGUg  uu u
          |  ||||||||  ||||||||||  || g
          c  cgucgugu  uaccggacgu  aa a
aacauaaaaa uc        ua          gg  a 

>ssc-mir-16-2 (-28.20)   [ssc-miR-16:9-30]

cag   c          -  A        C u   gauu 
   ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
   ||| |||||||||| || |||||||| | |||     
   aug agucgucgug ca uuaugacc c auu    u
gga   a          u  a        u u   aaaa 

>ssc-mir-16-1 (-30.50)   [ssc-miR-16:8-29]

uc    cU         UA        C  --    aa 
  cgcu  AGCAGCACG  AAUAUUGG Gu  agua  a
  ||||  |||||||||  |||||||| ||  ||||  u
  gcga  ucgucgugu  uuauaacc ca  uuau  a
gu    uu         ua        a  aa    aa 

>ssc-mir-17 (-29.40)   [ssc-miR-17-5p:10-32] [ssc-miR-17-3p:48-69]

ga       -CA        A  G     G   -  aua 
  auaaugu   AAGUGCUU CA UGCAG UAG ug   a
  |||||||   |||||||| || ||||| ||| ||    
  uauuacG   UUCACGGA GU ACGUC Auc ac   u
gg       AUG        A  G     -   u  gug 

>ssc-mir-30b (-30.60)   [ssc-miR-30b-5p:11-32] [ssc-miR-30b-3p:49-69]

uu      cgU          U  -A        uaaua 
  ucaguu   GUAAACAUCC AC  CUCAGCUg     c
  ||||||   |||||||||| ||  ||||||||      
  agucga   CAUUUGUAGG UG  GGGUCggu     a
--      cUU          -  GA        uaggu 

>ssc-mir-34a (-24.40)   [ssc-miR-34a:7-28]

-u    uU     UG -  UA          ----g  agu 
  uucu  GGCAG  U CU  GCUGGUUGUu     ug   a
  ||||  |||||  | ||  ||||||||||     ||    
  aaga  ccguc  a ga  cgacuaacga     ac   a
ac    uc     cu c  --          aggaa  gau 

>ssc-mir-130a (-33.64)   [ssc-miR-130a:50-71]

  -      a        c      ug  a   ucugca 
cg ggccgg gcucuuuu acauug  cu cug      c
|| |||||| |||||||| ||||||  || |||       
gc ccgguU CGGGAAAA UGUAAC  GA gau      c
  a      A        U      GU  C   cacuau 

>ssc-mir-185 (-45.50)   [ssc-miR-185:11-32]

---  u       UG   A     G         Au  uc 
   gg gagggau  GAG GAAAG CAGUUCCUG  gg  c
   || |||||||  ||| ||||| |||||||||  ||   
   cc cuuccug  cuc cuuuc gucggggac  cc  c
ccu  -       gu   -     g         -c  uc 

>ssc-mir-199b (-30.20)   [ssc-miR-199b*:46-67]

  -     c       u       u    u  ----  a 
cc gucua ccagugu uagacua cugu ca    gg c
|| ||||| ||||||| ||||||| |||| ||    ||  
gg cggaU GGUUACA GUCUGAU GACA gu    cc u
  u     U       C       -    U  uaaa  c 

>ssc-mir-210 (-34.60)   [ssc-miR-210:48-69]

gc    gg     a   cc   -      c  c -     
  gcag  cagcc cug  cac cgcaca ug g cugc 
  ||||  ||||| |||  ||| |||||| || | ||| u
  uguc  GUCGG GAC  GUG GCGUGU ac c ggcc 
cc    uA     C   -A   U      C  c a     

>ssc-mir-221 (-28.60)   [ssc-miR-221:44-65]

----u     ug   u         auuu    -   u 
     gaacc  gca acaauguag    cugu guu g
     |||||  ||| |||||||||    |||| ||| u
     UUUGG  CGU UGUUACAUC    GAca cgg u
cggac     GU   C         ----    a   g 

>osa-MIR531b (-46.70)   [osa-miR531b:11-30]

--c     cu      C     C    UG  -  c 
   cgagc  ugCUCG CGGGG UGCG  CC Gc a
   |||||  |||||| ||||| ||||  || ||  
   gcucg  gcgagc gcccc acgc  gg cg u
gca     uu      u     u    gu  u  a 

>osa-MIR1846d (-70.60)   [osa-miR1846d-5p:11-32] [osa-miR1846d-3p:87-106]

u  -  -         AC  A  A       CU -  a     u     c   c    ag 
 gc cu gucccUCCC  CG GC GCCGGAU  C cc gugag aggcc ggg cgcc  a
 || || |||||||||  || || |||||||  | || ||||| ||||| ||| ||||   
 cg ga cagGGAGGG  GC CG CGGCCUA  g gg cgcuc ucugg ccc gugg  u
c  a  g         AC  -  -       -U u  c     c     c   a    cc 

>osa-MIR1847 (-79.70)   [osa-miR1847.1:17-37] [osa-miR1847.2:60-83]

   cu    a        C                        a         c 
aga  cccu acuuugUG AGUUUGCAGUUGUGGCACugacau ugggccaga a
|||  |||| |||||||| |||||||||||||||||||||||| |||||||||  
ucu  ggga ugaaauac ucaaacguCAACACCGUGAUUGUA ACCCGGUuu c
   ag    c        a                        C         a 

>osa-MIR1848 (-40.40)   [osa-miR1848:11-31]

  -gc     cC    C    G      UG A 
cc   gggcc  CUCG CGGC CGCGCG  C g
||   |||||  |||| |||| ||||||  |  
gg   cucgg  gagc gccg gcgcgc  g g
  auc     -u    u    -      gu u 

>osa-MIR1849 (-51.20)   [osa-miR1849:66-86]

                           a         uc  g u 
aaauaagcuaaccuaggauaugauggg cauuaccua  ua a u
||||||||||||||||||||||||||| |||||||||  || | c
uuuaUUUGGUUGGAUCCUAUGCUAUcc guaauggau  au u g
                           c         -c  g u 

>osa-MIR1850 (-77.80)   [osa-miR1850.1:18-38] [osa-miR1850.2:43-63] [osa-miR1850.3:73-94]

       g a    c                A          -   U              U  au 
augugau g gaug gaUGGAAAGUUGGGAG UUGGGGgaag UUG GUGUGAACUAAACG GG  u
||||||| | |||| |||||||||||||||| |||||||||| ||| |||||||||||||| ||  g
uacacua c cuac cuacuuuucaacccuu aaccuccUUC AAC UACACUUGAUUUGU cc  g
       a a    a                a          U   -              C  gg 

>osa-MIR1851 (-340.50)   [osa-miR1851:439-459]

-   a                         a  a        a  ---  c            a                      u             gcucccucccugccaucgccgccgcacgggcagcggagcccgcggcgcaguggcgacucuucgguugacggcggcuggcuacgcgguggcaacgaggaggcggcggcggccaggagcugcuccaccggccccacgcg 
 cag gugucuucgccaaaaugccaucccg ac gaaaugcc cu   uc ucuucuuccucc uccugcgcgugaagagcucgcc gcggccauggcua                                                                                                                                         c
 ||| ||||||||||||||||||||||||| || |||||||| ||   || |||||||||||| |||||||||||||||||||||| |||||||||||||                                                                                                                                          
 guc cacagaagCGGUUUUACGGUAGGGU UG cuuuacgg ga   ag agaagaaggagg agggcgcgcacuucucgagcgg cgccgguaccggu                                                                                                                                         a
g   -                         C  C        g  ccg  a            c                      c             agagguggcggcgcggcuacggcggaacggcugccgcuagccccgcgacgggagggacgguaggggcgguugcggacacgucgacuccagcagcgccuuccugaggccgcugcugcgcgccuagggcggccgcgcgc 

>osa-MIR1852 (-59.80)   [osa-miR1852:103-123]

ua   u      c         a                   aaauugaacuccgugcacgguagu 
  gac aacuac ccugcauuc gaauucauauagcgauuga                        a
  ||| |||||| ||||||||| |||||||||||||||||||                        g
  uug uugaug GGACGUAAG CUUAGGUAUAucguuaacu                        u
ac   u      U         A                   aaucuuuguuaucuagacugauga 

>osa-MIR1853 (-54.70)   [osa-miR1853-5p:11-34] [osa-miR1853-3p:58-79]

              UU A                  c  cucc 
cgcaacuucgAGCA  C AACAUUCCCAAUUACCau gc    c
||||||||||||||  | |||||||||||||||||| ||    u
gcguuggagcUCGU  G UUGUAGGGGUUAAUggua cg    a
              UG C                  a  acaa 

>osa-MIR1854 (-21.39)   [osa-miR1854-5p:10-30] [osa-miR1854-3p:78-99]

c  --uu   a    G      G         ggguaacccuagaaccccauuu 
 gu    uaa UGGU AAAUUU UAGAUUGGA                      u
 ||    ||| |||| |||||| |||||||||                      u
 cg    auU GUCG UUUAGG GUUUAACCU                      g
u  ugau   A    -      G         acaacuuuuaguguuuaaaccc 

>osa-MIR1855 (-51.62)   [osa-miR1855:80-100]

--ccucc            cuc    c c       g    u  u u    cccaa 
       ccauuucuuggc   cucu g ugcuccu cuug gc c gagc     c
       ||||||||||||   |||| | ||||||| |||| || | ||||     u
       gguAGAGAACCG   GAGG C ACGAgga gaac cg g cucg     g
agcguga            -AU    U -       g    u  u -    uacuc 

>osa-MIR1856 (-64.70)   [osa-miR1856:11-31]

--    cacu         AA             u  c         ccauaucau    accgaucaccgucuuuagc 
  agag    gcUAUGCGU  GACGGAUUCGUAc ac ugcguccga         gugc                   u
  ||||    |||||||||  ||||||||||||| || |||||||||         ||||                    
  ucuu    cgauacgca  cugccuaagcaug ug acguaggcu         uacg                   u
uu    uuau         gg             c  u         ---------    acgaacguaaccaccucuc 

>osa-MIR1857 (-75.36)   [osa-miR1857-5p:11-31] [osa-miR1857-3p:100-120]

--g                                       a      ---------ccg     aaa 
   uuuuuauccUGGUUUUUUUGGAGCAUGAGGuuaucucuc guuuuu            ugucc   a
   ||||||||||||||||||||||||||||||||||||||| ||||||            |||||   u
   aaaaauaGGACCAAAAGAACCUCGUACUccaauagagag caaaag            acagg   a
uua                                       c      uucuugucaaaa     aaa 

>osa-MIR1428b (-58.50)   [osa-miR1428b:89-109]

    a u                cg   c             u aa  g    c   auga 
gguu g gcgcuuugcgaauuca  ggu uuaucuuguggua g  cu agua gua    u
|||| | ||||||||||||||||  ||| ||||||||||||| |  || |||| |||    u
ccaa c ugcgaaacGCUUAAGU  CCG AAUAGAAUaccau c  gg uuau cgu    u
    a u                -A   U             u gg  g    a   ggua 

>osa-MIR1428c (-63.80)   [osa-miR1428c:98-118]

        a    a u                ca   cc    c       u aa  g    --   g     
gcuucagu gguu g gcacuuugcgaauucg  ggc  uauc uguggua g  cu agua  cgc auaa 
|||||||| |||| | ||||||||||||||||  |||  |||| ||||||| |  || ||||  ||| ||| u
ugaaguca ccaa c ugugaaacGCUUAAGU  CCG  AUAG AUaccau c  gg uuau  gug uauu 
        c    a u                -A   UA    A       u gg  a    ac   g     

>osa-MIR1428d (-48.50)   [osa-miR1428d:89-109]

    a ug               ca   cc   a        u aa  g    --   g     
gguu g  uacuuugcgaauuca  ggc  uau uuguggua g  cu agua  cgc auga 
|||| |  |||||||||||||||  |||  ||| |||||||| |  || ||||  ||| ||| u
ccaa c  gugaaacGCUUAAGU  CCG  AUA AAUaccau c  gg uuau  gug uauu 
    a uu               -A   UA   G        u gg  g    ac   g     

>osa-MIR1428e (-60.00)   [osa-miR1428e-5p:11-32] [osa-miR1428e-3p:82-102]

                CA   CC            u aa  g        a  a 
gcgcuuggcgAAUUCA  GGC  UAUCUUGUGgua g  cu gguacgcg ug u
||||||||||||||||  |||  |||||||||||| |  || |||||||| || u
ugcgaacuGUUUAAGU  CCG  AUAGAAUaccau c  gg uuaugcgu ac u
                -A   UA            u gg  g        c  g 

>osa-MIR1858a (-180.10)   [osa-miR1858a:46-66]

--uc     a           aaagg                                   G                  a           a    -c  cg 
    ccguc ucgcugccggc     gagggggggugccgcaacaagGAGAGGAGGACGGA UGGGGCgaguggagcguc aaggggauguc ucgc  gc  a
    ||||| |||||||||||     ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||  ||  a
    ggcag agcgacggucg     cuuccccccacggcguuguuccucuccuccugccu accccgcucaccucguag uuccccuacag ggug  cg  u
cucc     c           -----                                   a                  c           -    cu  uc 

>osa-MIR1858b (-166.60)   [osa-miR1858b:43-63]

uc     a           aaa                                GAG      a           a           a     -  cg 
  ccguc ucgcugccggc   ggggggggugccgcaacaagGAGAGGAGGACG   UGGGGC aguggagcguc aaggggauguc ucgcu gc  a
  ||||| |||||||||||   ||||||||||||||||||||||||||||||||   |||||| ||||||||||| ||||||||||| ||||| ||  a
  gguag agcgacggucg   uuccccccacggcguuguuccucuccuccugu   accccg ucaccucguag uuccccuacag gguga cg  u
-c     c           --c                                aua      c           c           -     u  uc 

>osa-MIR1846a (-68.39)   [osa-miR1846a-5p:33-53] [osa-miR1846a-3p:62-82]

-c  c   cuaccaau    c         c  A        GC     C     g 
  cg ucc        gagc gccggaucu cc GUGAGGAG  CGGGG CGCUg a
  || |||        |||| ||||||||| || ||||||||  ||||| |||||  
  gc agg        cucg cggccuagg GG CGCUCCUC  GCCCC GUggc u
ga  a   aaagagac    -         c  C        UU     A     c 

>osa-MIR1846b (-65.49)   [osa-miR1846b-5p:33-53] [osa-miR1846b-3p:62-82]

-c  c   cuaccaau    cg        c  A        GC     C     g 
  cg ucc        gagc  ccggaucu cc GUGAGGAG  CGGGG CGCUg a
  || |||        ||||  |||||||| || ||||||||  ||||| |||||  
  gc agg        cucg  ggccuagg GG CGCUCCUC  GCCCC GUgac u
ga  a   aaagagac    -a        c  C        UU     A     c 

>osa-MIR1859 (-42.54)   [osa-miR1859:66-87]

--      ug a          -     a       a g     ugaacc 
  gggagu  u ggaauggaug cguag gaaagaa u aaauc      a
  ||||||  | |||||||||| ||||| ||||||| | |||||       
  ccuuua  A CCUUACCUGC GUAUC CUUUcuu a uuuag      g
ga      gu A          A     -       - g     uguuua 

>osa-MIR1860 (-73.40)   [osa-miR1860-5p:38-58] [osa-miR1860-3p:91-112]

ucuu          ua   -----u                         -             -   auuugccuca 
    gauuugaugg  ggg      uaguguuauuuguaaagAGAAAACC AGCUUCCAGAUCU cga          a
    ||||||||||  |||      ||||||||||||||||||||||||| ||||||||||||| |||          a
    cuggauuacc  ccc      aucacaauaaacauuUCUCUUUUGG UCGAAGGUCUAga guu          c
--gu          --   uuuuuu                         A             u   cucuucuauu 

>osa-MIR1884a (-91.49)   [osa-miR1884a:9-30]

-                           CA  c                             uuuaacauaaauauguaaaaguauaaguuaagauuacauuuuau 
 ucaaaaugUGUGACGCCGUUGACUUUU  Ua aacguuugaccauucgucuuauucaaaaa                                            u
 |||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||                                            u
 aguuuuacauacuguggcaacugaaaa  gu uugcaaacugguaaguagaauaaguuuuu                                            g
a                           ac  a                             ucaauauauuuauaguaaauaaaauaacauugaacaaaauagua 

>osa-MIR1861a (-50.40)   [osa-miR1861a:23-44]

-uugug   c      u     c        A     A     A  a  u       uc  ucu 
      uug auauuc uaggc UGAUCUUG GGCAG AACUG Gu gu ggugaac  gc   a
      ||| |||||| ||||| |||||||| ||||| ||||| || || |||||||  ||    
      aac uauaag aucug gcuagaac cuguc uuggc ca cg ucacuug  ug   u
agugua   a      u     a        c     c     a  g  c       cu  uug 

>osa-MIR1861b (-62.00)   [osa-miR1861b:18-39]

u  c      u     c        A                 uc      uc  ucu 
 ug auauuc uaggc CGAUCUUG GGCAGGAACUGAGuagu  gugaac  gc   a
 || |||||| ||||| |||||||| |||||||||||||||||  ||||||  ||    
 ac uauaag gucug gcuagaac cuguccuuggcuuauca  cacuug  ug   u
a  a      u     a        c                 cc      cu  uug 

>osa-MIR1861c (-46.50)   [osa-miR1861c:23-44]

-  g g          u   a c  A      AG         A     uc u 
 cg u uugcauauuc uag c CG UCUUGU  CAAGAACUG Guagu  g u
 || | |||||||||| ||| | || ||||||  ||||||||| |||||  |  
 gu g aacguauaag guc g gc agaaca  guucuuggc caucg  c a
g  g a          u   c a  c      cu         g     cu a 

>osa-MIR1861d (-58.50)   [osa-miR1861d:18-39]

u  c      u     c        A           A  a  u       uc  ucu 
 ug auauuc uaggc UGGUCUUG GGCAGGAACUG Gu gu ggugaac  gc   a
 || |||||| ||||| |||||||| ||||||||||| || || |||||||  ||    
 ac uauaag gucug gccagaac cuguccuuggc ca cg ucacuug  ug   u
a  a      u     a        c           g  g  c       cu  uug 

>osa-MIR1861e (-58.20)   [osa-miR1861e:16-37]

        u     c                    A     uc u 
gcauauuc uaggc CGGUCUUGUGGCAAGAACUG Guagu  g u
|||||||| ||||| |||||||||||||||||||| |||||  |  
cguauaag gucug gccagaacacuguucuuggc caucg  c a
        u     a                    g     cu a 

>osa-MIR1861f (-60.60)   [osa-miR1861f:17-38]

u cg     u     c        A                 u u     uu  ucu 
 g  uauuc uaggc CGAUCUUG GGCAGGAACUGAGuagu g ugaac  gc   a
 |  ||||| ||||| |||||||| ||||||||||||||||| | |||||  ||    
 c  auaag aucug gcuagaac cuguccuuggcuuauca c acuug  ug   u
a au     u     a        c                 c c     cu  uug 

>osa-MIR1861g (-55.80)   [osa-miR1861g:23-44]

-   ug          u     c A                 GA     uc u 
 cgg  uugcauauuc uaggc C GUCUUGUGGCAAGAACU  Guagu  g u
 |||  |||||||||| ||||| | |||||||||||||||||  |||||  |  
 guu  aacguauaag guccg g uagaacacuguucuugg  caucg  c a
g   ga          u     a c                 ug     cu a 

>osa-MIR1861h (-52.20)   [osa-miR1861h:11-32]

u  u     c        A           A  a  u       uc  ucu 
 uc uaggc CGGUCUUG GGCAGGAACUG Gu gu ggugaac  gc   a
 || ||||| |||||||| ||||||||||| || || |||||||  ||    
 ag gucug gucagaac cuguccuuggc ca cg ucacuug  ug   u
a  u     a        c           a  g  c       cu  uug 

>osa-MIR1861i (-52.00)   [osa-miR1861i:5-26]

   c        A           A     u       uc  ucu 
ggc CGAUCUUG GGCAGGAACUG Guagu ggugaac  gc   a
||| |||||||| ||||||||||| ||||| |||||||  ||    
cug gcuagaac cuguccuuggc caucg ucacuug  ug   u
   a        c           a     u       cu  uug 

>osa-MIR1861j (-52.70)   [osa-miR1861j:14-35]

      u     cC       A           A  a  u       uc  ucu 
auauuc uaggc  GGUCUUG GGCAGGAACUG Gu gu ggugaac  gc   a
|||||| |||||  ||||||| ||||||||||| || || |||||||  ||    
uauaag gucug  ucggaac cuguccuugac ca cg ucacuug  ug   u
      u     aa       c           a  g  c       cu  uug 

>osa-MIR1861k (-58.20)   [osa-miR1861k:16-37]

        u     c                    A     uc u 
gcauauuc uaggc CGGUCUUGUGGCAAGAACUG Guagu  g u
|||||||| ||||| |||||||||||||||||||| |||||  |  
cguauaag gucug gccagaacacuguucuuggc caucg  c a
        u     a                    g     cu a 

>osa-MIR1861l (-63.40)   [osa-miR1861l:23-44]

   ug  -gc      u              A           A  a  u      cuc  ucu 
ucg  uu   auauuc uaggccCGAUCUUG GGCAGGAACUG Gu gu ggugaa   gc   a
|||  ||   |||||| |||||||||||||| ||||||||||| || || ||||||   ||    
agu  aa   uauaag gucugggcuagaac cuguccuuggc ca cg ucacuu   ug   u
   gu  aca      u              c           a  g  c      acu  uug 

>osa-MIR1861m (-52.70)   [osa-miR1861m:18-39]

u         uuag  c                    A    uu  uu 
 ugcauauuc    gc CGGUCUUGUGGCAAGAACUG Guag  cg  a
 |||||||||    || |||||||||||||||||||| ||||  ||   
 acguauaag    ug gccagaacacuguucuuggc cauu  gc  a
a         uaua  a                    c    --  uc 

>osa-MIR1861n (-67.70)   [osa-miR1861n:23-44]

--    g          u     c        U           A     u      cuc  uuu 
  gcgu uuguauauuc uaggc CGAUCUUG GGCAGGAGCUG Guagc ggugaa   gc   a
  |||| |||||||||| ||||| |||||||| ||||||||||| ||||| ||||||   ||    
  ugua aacguauaag gucug gcuagaac cuguccuuggc caucg ucacuu   ug   u
ag    -          u     a        c           a     c      acu  uug 

>osa-MIR1862a (-57.50)   [osa-miR1862a:55-78]

                       -    a      ---    cau 
guacucccuccgucccgaaauaa ccaa ccucgu   agga   g
||||||||||||||||||||||| |||| ||||||   ||||   u
uaugagggagGCAGGGUUUUAUU GGUU GGAGCA   uccu   c
                       U    -      uga    aca 

>osa-MIR1862b (-82.00)   [osa-miR1862b:132-155]

      uu     gaacau  -uu     c  -   g  ua       a                    ua   aa   u         a     ---   cg 
ggucau  agaua      gu   caucu ag ugc cc  cucccuu gucccaaaauaaauuaaucu  uac  gau uggcacauc uagua   cua  a
||||||  |||||      ||   ||||| || ||| ||  ||||||| ||||||||||||||||||||  |||  ||| ||||||||| |||||   |||   
ccagua  ucuau      ca   guagg uc aug gg  gagggag CAGGGUUUUAUUUGGUUGGA  Aug  uua acuguguag aucau   ggu  a
      -c     -gacgc  ucc     c  u   a  --       G                    GC   cc   c         g     aua   cu 

>osa-MIR1862c (-51.62)   [osa-miR1862c:56-79]

--    c                gu     c        uauau 
  acuc cuccgucccaaaauaa  caauc cguacuag     g
  |||| ||||||||||||||||  ||||| ||||||||     a
  ugag gagGCAGGGUUUUAUU  GUUGG GCAugauc     c
ga    a                UG     A        cuuca 

>osa-MIR1863 (-127.61)   [osa-miR1863:341-364]

--c      u                  c             aguugcucuuguucccucaaucccguuugucuccauccacaaccacacgagugcaaagccucacauucaugucaacaacaacucucaugucauuagcaaaucuagugucuagcaucaacaccuagguagcacuuauugguuaaaa 
   cauauc cuagucuaauaugguauc gagcuuauugguu                                                                                                                                                 a
   |||||| |||||||||||||||||| |||||||||||||                                                                                                                                                  
   guauag GAUUAGAUUGUACCAUAG CUCGAauaaccag                                                                                                                                                 g
ucc      u                  U             aagggguaugacguugaaacgauugguuauaaaucacuguuuggaagguaguguuguaauaauaacguucgugguuucgcguguauaacaguucguagguuugcacaucaccugaucaccaacgaguaaaaaggaucguuuacgg 

>osa-MIR1864 (-146.60)   [osa-miR1864:227-250]

-                            cca      aga    a    ug     a      c            ag aggcggguuugaccggugggagggggcuuugaccguucuuugaccgaa 
 acuacacauugaccaucgcguuacuacg   uucuug   gacg gaau  aaaag gguggg guggggggaggu  c                                                g
 ||||||||||||||||||||||||||||   ||||||   |||| ||||  ||||| |||||| ||||||||||||  |                                                u
 ugaugUGUAACUGGUAGUGCAAUGAUGU   aaggac   cugu uuug  uuuuc ccaccc caccccccucca  g                                                g
a                            Uac      --g    g    gu     c      a            ga aguacccgguuggguggagggggagggaucccggguuuuggguggagg 

>osa-MIR1865 (-73.20)   [osa-miR1865-5p:11-34] [osa-miR1865-3p:111-134]

--c     c   U         G              ca  a  c       u ug    ---        -  g 
   ucgaa uac GCUAGUGAU GUGAUUCUUCGACa  gu uu ggcgagu u  ggcu   ucaucaug cg u
   ||||| ||| ||||||||| ||||||||||||||  || || ||||||| |  ||||   |||||||| || g
   aguuu aUG UGAUCACUG CGCUAAGAAGCugu  ca aa ccguuca a  ccga   agugguac gc c
cuc     a   U         A              --  g  a       - gu    agc        a  u 

>osa-MIR1866 (-40.10)   [osa-miR1866-5p:11-34] [osa-miR1866-3p:52-73]

-      -c   G                     CG      g 
 cuuuug  acg AGGGAUUUUGCGGGAAUUUCA  ggaauu a
 ||||||  ||| |||||||||||||||||||||  |||||| g
 ggaaac  ugu UUCUUAAAAUGUCCUUAAAGU  ccuuag u
a      cu   G                     --      u 

>osa-MIR1867 (-72.20)   [osa-miR1867:91-114]

u                   a   c         -               c          a 
 uuacacauuuacucccucu ucc agaaaaaaa caauuccuagcuuug auuuggauaa c
 ||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||  
 aauguguagaUGAGGGAGA AGG UCUUUUUUU guuaaggauugaaau uagacuuguu a
-                   C   A         U               u          a 

>osa-MIR1423b (-106.20)   [osa-miR1423b:25-46]

------a     a   u                    A    -             a        -     -c  g 
       gcaca cac aguauuugggaggCAACUAC CGUU GGGCGCUCGAucc gggguggg aaaau  gg c
       ||||| ||| |||||||||||||||||||| |||| ||||||||||||| |||||||| |||||  ||  
       cgugu gug ucauaaacccucuguugaug gcga cccgcgagcuagg ccccaccc uuuug  cc g
guacgua     c   u                    -    a             c        c     ca  c 

>osa-MIR1868 (-82.30)   [osa-miR1868:47-70]

gg    gc       --       ua    ac       a       cUC                C      gg   ugu  u 
  aaag  uuuguaa  aacacac  uuug  aguuugg aagcgug   ACGGAAAACGAGGGAG AGCCAa  cau   uc u
  ||||  |||||||  |||||||  ||||  ||||||| |||||||   |||||||||||||||| ||||||  |||   || a
  uuuc  aaacguu  uugugug  aaau  ucgagcc uucgcac   ugccuuuugcuccuuc ucgguu  gua   gg c
ua    aa       cu       gc    cu       c       aaa                a      aa   uuu  c 

>osa-MIR812f (-65.70)   [osa-miR812f:146-169]

-          -                             ua        a   uuaauauuuuuauuguuauuagauuauaaaacaca 
 caugaguuuu gugucuaacuuugaucguccguuuuauuu  aauuuuuu uga                                   a
 |||||||||| |||||||||||||||||||||||||||||  |||||||| |||                                   a
 guacuuaaaG CACAGGUUGAAAUUAGUAGGCAaaauaaa  uuaaaaaa acu                                   u
g          G                             --        a   uuuuugauuucuuguauucaguguguauuucauga 

>osa-MIR1869 (-55.50)   [osa-miR1869:11-34]

--     a         A  A            GUAuu      a acagg   a      gac    aau 
  aagga caccUGAGA CA UAGGCAUGGGAG     gggaaa c     aac uauugu   cccu   u
  ||||| ||||||||| || ||||||||||||     |||||| |     ||| ||||||   ||||    
  uuucu guggauucu gu auccguacccuu     uccuuu g     uug guaaua   ggga   u
uu     c         c  a            guacc      c --gag   -      -aa    aau 

>osa-MIR1870 (-103.30)   [osa-miR1870:44-67] [osa-miR1870-3p:140-163]

-u         -        g      -    ------        c                A     U      u    c          augguacuguugcccu 
  agugucaaa guaaugga gauuug ggaa      auaaacug guucaUGCUGAAUUAG CCUAG GGGCAU uaua aucacaacac                u
  ||||||||| |||||||| |||||| ||||      |||||||| |||||||||||||||| ||||| |||||| |||| ||||||||||                 
  ucacaguuu cauuaccu cuaaac ccuu      uauuugau CAAGUACGACUUAAUC GGAUU cccgua auau uaguguugug                u
au         u        a      u    accucu        A                G     U      u    c          auuccgaucuuuuucc 

>osa-MIR1871 (-60.41)   [osa-miR1871:82-105]

ua        -      u  ug    uc     u                u      g guagccau 
  acaaugaa uauauc gu  uuuc  ucaaa cuaacaugguaucgga ccauag u        a
  |||||||| |||||| ||  ||||  ||||| |||||||||||||||| |||||| |        u
  uguuacuu auauag ca  aaag  aguUU GGUUGUACUAUAGUCU GGUAuc a        c
-a        u      u  gu    ga     U                C      g aauucuaa 

>osa-MIR1872 (-24.10)   [osa-miR1872:41-64]

--ua    -   -aa       g -            g a 
    auau cuc   ugcuugu g agacuuaugguu a c
    |||| |||   ||||||| | |||||||||||| | u
    ugua gag   AUGGGCA U UCUGAAUGUCAA u g
ccca    c   caA       G G            G u 

>osa-MIR1873 (-77.30)   [osa-miR1873:14-37]

u  au      c                          c    ---------    gacauc   a    cug     gg      -c  ug  --aa  -u       
 ag  uaugaa cUCAACAUGGUAUCAGAGCUGGAAGu cuaa         aguu      aug uagc   acgau  uggaga  ca  au    gc  gauacc 
 ||  |||||| |||||||||||||||||||||||||| ||||         ||||      ||| ||||   |||||  ||||||  ||  ||    ||  ||||| a
 uc  guauuu gaguuguaccauagucucgaucuuca gauu         ucaa      uac aucg   uguua  accucu  gu  ua    cg  uuaugu 
-  cg      u                          a    caaaaagau    --acac   -    ---     ga      uu  gu  cagc  uu       

>osa-MIR1874 (-57.91)   [osa-miR1874-5p:34-57] [osa-miR1874-3p:103-126]

-cc             a   caguggu    a   A   C   U  -A         A   -     aucuucga       a 
   auaaucaucuauu gua       gaag caU GGG UAC AC  CCAUCCAUA Ggg uucga        ugugccu g
   ||||||||||||| |||       |||| ||| ||| ||| ||  ||||||||| ||| |||||        ||||||| a
   uauugguagauaa cau       uuuc GUA CCC AUG UG  GGUAGGUAU ccc agguu        acauggg u
uuu             a   -------    c   G   A   -  GA         a   u     -------g       a 

>osa-MIR1875 (-108.10)   [osa-miR1875:220-243]

gc   c      ca        ug            a   acauu     a aacg    c a         c       c     ug ug     --au   uuaac      cu    --     u 
  ugu cauuuu  uugcacuu  cuccauuguggu uug     cugca g    aguc c guaucaagu acuguua ggugu  u  guacc    uga     auaaca  ugac  ggcca a
  ||| ||||||  ||||||||  |||||||||||| |||     ||||| |    |||| | ||||||||| ||||||| |||||  |  |||||    |||     ||||||  ||||  |||||  
  aca guaAAG  AACGUGAA  GAGGUAACAcca agc     gacgu c    ucag g cauaguuua ugacaau ucacg  g  caugg    acu     uauugu  guug  cuggu c
uu   a      AC        GU            a   gaguu     - -gga    u a         u       u     gu ua     agac   ucgac      au    ua     u 

>osa-MIR1862d (-87.10)   [osa-miR1862d:90-113]

cuac       ucuc     uu    -                             g           augu  c 
    uggcuag    guagc  gcua gguacucccucugucccaaaauaaacaaa cuaguacgggg    gg a
    |||||||    |||||  |||| ||||||||||||||||||||||||||||| |||||||||||    || c
    auugguc    cauug  ugau cuaugagggagGCAGGGUUUUAUUUGUUU GAUCAuguccu    cc u
-auc       uccu     uu    a                             G           -gau  u 

>osa-MIR1876 (-78.90)   [osa-miR1876:106-129]

ggca     guugg  uu    ug a       u    ug   uu                     c     g ua      
    cauau     ua  cuau  g augcaag gggc  gcu  ugaacccauuuaugggcuauu aagug g  aacca 
    |||||     ||  ||||  | ||||||| ||||  |||  ||||||||||||||||||||| ||||| |  |||| u
    guaug     au  gaua  c uauguuc CCCG  CGG  GUUUGGGUGAAUAuccgguaa uucac u  uugga 
-uua     -----  uu    gu c       u    GU   GU                     a     g gg      

>osa-MIR1884b (-86.30)   [osa-miR1884b:11-34]

       u                             a      -   a                   ucgagcaaauauaaaaauauaagugaggcuuaagguauauuu 
ucuguuu uaAAUGUAUGACGCUGUUGACUUUUAgau uauguu gac auucgucuuauucaaaaaa                                          g
||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||                                           
agguaaa auuuauauacuguggcaacugaaaauuua augcaa cug ugagcagaaugaguuuuuu                                          a
       u                             g      a   g                   caauauguccauaguaauuaaaacgguacugaacaaaauagu 

>osa-MIR1862e (-48.00)   [osa-miR1862e:60-83]

--          a            a            uu     u 
  uauuuccuuc ucccaaaaugaa aaaucuaguaca  augug u
  |||||||||| |||||||||||| ||||||||||||  ||||| u
  augagggaGG AGGGUUUUAUUU UUUAGAUCaugu  uauac g
cu          C            G            cc     a 

>osa-MIR1877 (-100.50)   [osa-miR1877:217-240]

       a    cg                  gc ug         c     u     aaaaaa         aucaacu                      uaacuucauaaacaugcaaguuaaaauua 
auucuaa cucu  aggggacauucucucauu  u  caugucauc aaaug uuaug      uuaaaaaaa       ggauagauuaauaugugauaga                             a
||||||| ||||  ||||||||||||||||||  |  ||||||||| ||||| |||||      |||||||||       ||||||||||||||||||||||                             a
uaagauu gaga  ucuccuguaGGGGAGUAG  A  GUACAGUAG uuuac aauau      aauuuuuuu       uuuaucuaauuauacacuaucu                             c
       c    --                  UA GU         A     c     aaaaaa         --auuau                      aaucaacaucaaaaaacguugaacaucuu 

>osa-MIR1878 (-41.94)   [osa-miR1878:11-34]

--    cug -                       AGAaaau  u      g 
  acca   c agACUUAAUCUGGACACUAUAAA       ug gcaugu a
  ||||   | |||||||||||||||||||||||       || ||||||  
  uggu   g uuugaguuagacuugugauguuu       ac cguaua a
gu    -aa a                       aaauauu  c      a 

>osa-MIR1879 (-76.20)   [osa-miR1879:112-135]

---u  -                    c            --   acgcaaauggcuuguugaggaauaaacaucuu 
    cc aacccaucccaccucguccc aaaccaaacaca  ugc                                g
    || |||||||||||||||||||| ||||||||||||  |||                                 
    gg uuggguagGGUGGAGUAGGG UUUGGUUUGUGu  acg                                c
accu  a                    A            au   aacuucuuauaguaucaaaucuuacguucccu 

>osa-MIR1880 (-77.50)   [osa-miR1880:24-47]

-gu                     U    A               AU    c    -     ua 
   uccgcuugugaaaaucgauuu UCCA GCGGGCCACUUAAGC  Uccg cugu aaaau  a
   ||||||||||||||||||||| |||| |||||||||||||||  |||| |||| |||||  a
   aggcggaugcuuuuagcuaaa aggu cgccuggugaauucg  aggc gacg uuuua  g
agu                     u    c               cu    c    c     ug 

>osa-MIR1881 (-210.00)   [osa-miR1881:38-61]

                        a                                         c                   c                    aa  aagauuuguaccgcuggggaagugccagaagaaaagaacaaggaagacuugcuagca 
aaccaaguuaaaaugcucauaggu ugaacaagcaucAAUGUUAUUGUAGCGUGGUGGUGUgaccu ugugcacguaagcuugagg agcaaguucgacuccuucaa  gg                                                         g
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  ||                                                          
uugguucaauuuuacgagugucca acuuguucguaguugcaauaacaucgcaucaccacacugga acacgugcguucgaacucc ucguucaagcugaggaaguu  uc                                                         g
                        g                                         u                   a                    cg  aagaagaaacaagaaaagaagaccuggaaaaaaaaagguucaaauggcaggaaaaca 

>osa-MIR1882a (-67.80)   [osa-miR1882a:24-47]

-uc           ccaaua           U              U        g   auucccauaaauu     u   a 
   uguuaucggua      uccuAGAUUGC UUCAAGGUCAUUUC Uuauggaa ccc             cagua cca a
   |||||||||||      ||||||||||| |||||||||||||| |||||||| |||             ||||| |||  
   auaguagucgu      aggaucuaacg agguucuaguaaag aauaccuu ggg             guugu ggu g
gca           ---uug           u              c        g   ---auaaaucuau     u   a 

>osa-MIR1882b (-82.74)   [osa-miR1882b:22-45]

u          c   ua           U              U           -c         a  uuauuau   a 
 guuaucguua caa  uccuAGAUUGC UUCAAGGUCAUUUC Uuauggaaccc  auucccaua au       cca a
 |||||||||| |||  ||||||||||| |||||||||||||| |||||||||||  ||||||||| ||       |||  
 caauaguagu guu  aggaucuaacg agguucuaguaaag aauaccuuggg  uaaggguau ua       ggu g
-          c   ug           c              u           aa         c  ugucguu   a 

>osa-MIR1882c (-74.60)   [osa-miR1882c:7-30]

-ua           U              U           ca        a  u     u   a 
   uccuAGAUUGC UUCAAGGUCAUUUC Uuagggaaccc  uucccaua au cagua cca a
   ||||||||||| |||||||||||||| |||||||||||  |||||||| || ||||| |||  
   aggaucuaacg agguucuaguaaag aaucccuuggg  aaggguau ua guugu ggu g
uug           c              c           -a        c  u     u   c 

>osa-MIR1882d (-75.50)   [osa-miR1882d:22-45]

u     cg   c   ua           U              U     a     -c         a  u     u   a 
 guuau  uua caa  uccuAGAUUGC UUCAAGGUCAUUUC Uuagg aaccc  auucccaua au cagua cca a
 |||||  ||| |||  ||||||||||| |||||||||||||| ||||| |||||  ||||||||| || ||||| |||  
 caaua  agu guu  aggaucuaacg agguucuaguaaag aaucc uuggg  uaaggguau ua guugu ggu g
-     au   c   ug           c              c     c     aa         c  u     u   a 

>osa-MIR1882e (-76.60)   [osa-miR1882e:11-34]

--c   ua           U              UUu         -c         a  u     u   a 
   caa  uccuAGAUUGC UUCAAGGUCAUUUC   agggaaccc  auucccaua au cagua cca a
   |||  ||||||||||| ||||||||||||||   |||||||||  ||||||||| || ||||| |||  
   guu  aggaucuaaug agguucuaguaaag   ucccuuggg  uaaggguau ua gucgu ggu g
guc   ug           c              cau         aa         c  u     u   c 

>osa-MIR1882f (-84.90)   [osa-miR1882f:22-45]

u         ac   u    u       U              U     g     -c         a  u     u   a 
 guuaucguu  caa aucc AGAUUGC UUCAAGGUCAUUUC Uuagg aaccc  auucccaua au cagua cca a
 |||||||||  ||| |||| ||||||| |||||||||||||| ||||| |||||  ||||||||| || ||||| |||  
 caauagcag  guu uagg ucuaacg agguucuaguaaag aaucc uuggg  uaaggguau ua gucgu ggu g
g         gc   u    u       u              c     -     aa         c  u     u   c 

>osa-MIR1882g (-84.10)   [osa-miR1882g:21-44]

u         c   ca           U              U       c   --         a  u     u   a 
 uuaucguua caa  uccuAGAUUGC UUCAAGGUCAUUUC Uuaugga ccc  auucccaua au cagua cca a
 ||||||||| |||  ||||||||||| |||||||||||||| ||||||| |||  ||||||||| || ||||| |||  
 aauaguagu guu  aggaucuaacg agguucuaguaaag aauaccu ggg  uaaggguau ua gucgu ggu g
c         c   ug           c              c       u   aa         c  u     u   a 

>osa-MIR1882h (-91.90)   [osa-miR1882h:36-59]

ca   -     aa   ---          c   u            U              U           -c   c     a  u     u   a 
  ugu cuaga  ucu   guuaucguua caa uuccuAGAUUGC UUCAAGGUCAUUUC Uucugaaaccc  guu ccaua au cagua cca a
  ||| |||||  |||   |||||||||| ||| |||||||||||| |||||||||||||| |||||||||||  ||| ||||| || ||||| |||  
  acg gaucu  gga   caauagcagu guu gaggaucuaacg agguucuaguaaag aagacuuuggg  uaa gguau ua guugu ggu g
ua   u     gg   uug          c   u            c              u           aa   a     c  u     u   c 

>osa-MIR812g (-92.10)   [osa-miR812g:173-196]

uucc    uaa     c                    c   -     a  c cu                           aaaaauuaaaaacauaagucaugaguaaaguauacuauuca 
    gaug   ucccu uguuccauuuuaagugcagc aug guuuu cg g  caacuuuaaucguccgucuuauuuaaa                                         u
    ||||   ||||| |||||||||||||||||||| ||| ||||| || |  |||||||||||||||||||||||||||                                         a
    cuau   aggga gcaggguaaaauucauguug uac caaag gu C  GUUGAAAUUAGUAGGCAGAAuaaauuu                                         u
-uua    --g     a                    a   u     -  A AG                           aaaaaaauauuaaucauaaaaauaacaauacucuauuauuu 

>osa-MIR812h (-83.71)   [osa-miR812h:121-144]

uu    u        cc    u      c au         -  --c                            cu        -------      u 
  guac cccuccgu  cauu uaagug a  caugaguuu cg   ccaacuuuaaucaucuguuuuauuugaa  uuuuauaa       auagua u
  |||| ||||||||  |||| |||||| |  ||||||||| ||   ||||||||||||||||||||||||||||  ||||||||       ||||||  
  caug gggaggua  guaa auucac u  guacucaaa gc   GGUUGAAAUUAGUAGGCAGAAuaaauuu  aaaauauu       uguuau u
au    -        aa    c      a cg         a  ACA                            --        agaguau      u 

>osa-MIR812i (-100.40)   [osa-miR812i:173-196]

--ua a        ca   a               aua         c        a                  aaacuuuuuuaugauuaguauuuuuuuauuagauuguaaaacauga 
    g acucccuc  ucc aaaauaagcguagcc   aguuuucgu uucaacuu gaucaucugucuuauuug                                              a
    | ||||||||  ||| |||||||||||||||   ||||||||| |||||||| ||||||||||||||||||                                               
    c ugagggag  agg uuuuauucgcgucgg   ucaaaagcA AGGUUGAA UUAGUAGGCAGAAuaaau                                              u
gagg a        ua   g               gac         C        A                  aaaaaaaaucuuuuagauuuuauuauauucaguacguauuucauua 

>osa-MIR812j (-116.90)   [osa-miR812j:200-223]

aga u   ---   ------        --g         uc       c                          u              ug            --       uuu   aaaaacuaaaaaacacaagucacgcauaaacuacu 
   g gca   ucc      uuggucuu   gauaguacu  cuuuguc caaaauaagcguagccaugaguuuuc uguccaacuuuaau  uucgucuuauuu  aauuuuu   uga                                   a
   | |||   |||      ||||||||   |||||||||  ||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||  |||||||   |||                                   u
   c cgu   agg      gacuagaa   uuaucauga  gaggcag guuuuauuugcgucgguacucaaagg ACAGGUUGAAAUUA  AGGCAGAAuaaa  uuaaaaa   acu                                   u
--a -   aaa   uugauc        agg         ga       u                          c              GU            cu       cau   aaucauaaaaauaacaauaaucuaauauuuuguac 

>osa-MIR1883a (-101.70)   [osa-miR1883a:22-45]

--ac       u                      GC                  a   g 
    ccgucac gguaucuagucACCUGUGACGG  CGAGAAUGGAAcccguca agg a
    ||||||| ||||||||||||||||||||||  |||||||||||||||||| |||  
    ggcagug ccguagaucaguggacacugcc  gcucuuaccuugggcagu ucc c
gccc       u                      ua                  c   a 

>osa-MIR1883b (-98.40)   [osa-miR1883b:30-53]

--c      a                             C    C A   -       c u      aa 
   gguugc gcccgucacagguaucuagucACCUGUGA GGGC G GAA UGGAAuc g caaagg  c
   |||||| ||||||||||||||||||||||||||||| |||| | ||| ||||||| | ||||||   
   ucaacg cgggcaguguccauagaucaguggacacu cccg c cuu aucuuag c guuucc  a
cau      c                             a    u -   c       a u      ac 

>bra-MIR1885 (-149.16)   [bra-miR1885:217-238]

cau   -  c    c        u -u            c    u      a       c   -uaaaaaa          a          -          aau  a          agaaugauacugagcucuuacauucgauuagaugcgauaauc 
   ccu gu uuca gagcuucc c  agaagaugugcg agag cuuucu agucaca uca        uucaaagaaa ggaaucauac uuucauugau   ga aucaauagag                                          u
   ||| || |||| |||||||| |  |||||||||||| |||| |||||| ||||||| |||        |||||||||| |||||||||| ||||||||||   || ||||||||||                                           
   gga ca aagu cucgaagg g  ucuucuacaugc ucuc gaaaga ucagugu agu        aaguuucuuu CCUUAGUAUG AAAGUAACUA   cu uaguuaucuc                                          u
gau   a  a    a        c cc            a    c      a       a   uuucacua          c          G          Cuu  c          cuacuagguaaccaguagucgagaauguucguuaaucuccua 

>ath-MIR1886 (-48.70)   [ath-miR1886.1:4-24] [ath-miR1886.2:13-33] [ath-miR1886.3:84-104]

ga     A                         a      auguagacgaugcuau 
  gUGAG GAAGUGAGAUGAAAUCUUUGAUUGG aauuuc                c
  ||||| ||||||||||||||||||||||||| ||||||                 
  uacuc cuUCAUUCUACUUUAGAAAUUAAcc uuaaag                a
-g     c                         c      aaaaccaguauacccc 

>ath-MIR1887 (-30.60)   [ath-miR1887:39-59]

u     a        g u           g 
 uguuc cuuagauu u cuuaguaugag u
 ||||| |||||||| | ||||||||||| g
 acaAG GAAUCUGA A GAAUCAUgcuc u
a     A        G U           u 

>ath-MIR1888 (-39.80)   [ath-miR1888:10-30]

         UA                       c  uu       ag u 
ccaaauuuu  AGUUAAGAUUUGUGAAGAAagag uu  auauaag  u u
|||||||||  ||||||||||||||||||||||| ||  |||||||  |  
gguuuagaa  ucgauucuaaauacuucuuuuuu aa  uauauuc  a u
         --                       a  uu       gg u 

>aga-mir-11 (-43.10)   [aga-miR-11:63-84]

g    c          ug  a       cugugugguuauuagc 
 cauc ggcaagaacu  ga cugugau                c
 |||| ||||||||||  || |||||||                g
 guag UCGUUCUUGA  CU GACACUA                c
g    c          GU  -       Cacuucucgaagcuug 

>aga-mir-981 (-36.90)   [aga-miR-981:63-82]

      -    gau         c    u    u    ----------   ga 
gccuua ucug   cggguuucg uggc aacg guug          ugc  g
|||||| ||||   ||||||||| |||| |||| ||||          |||   
cggaau aggc   GUCCAAAGC GCUG UUGC Uaac          acg  c
      g    -ac         A    -    U    uucaaaaaaa   ag 

>aga-mir-87 (-35.60)   [aga-miR-87:56-76]

----------   uu   -     cca       -       aa    --gaua  u 
          gau  cuc ucggc   gccugaa auuugcu  accu      cg g
          |||  ||| |||||   ||||||| |||||||  ||||      ||  
          cug  gag agcug   UGGACUU UAAACGA  UGGa      gc u
gcugcuuaca   gc   c     -UG       A       -G    accaaa  u 

>aga-mir-1889 (-58.40)   [aga-miR-1889:95-115]

u ug           c gc        a       a      caccg  aa   c    c   u   c 
 g  gcguggauggg g  aaucucaa uuguaau gugugu     uu  cgg ugga cau gug u
 |  ||||||||||| |  |||||||| ||||||| ||||||     ||  ||| |||| ||| |||  
 c  cguaccugccc c  UUAGGGUU GACAUUA CACAca     aa  gcc accu gug uac g
g cu           - -A        A       -      ---aa  ga   -    a   c   c 

>aga-mir-375-1 (-40.60)   [aga-miR-375:67-88]

u        gagac     uu g  u   ua     c   u     aa     ua 
 guugcgau     agaau  g au acu  agcca gcg acaga  cuuuu  g
 ||||||||     |||||  | || |||  ||||| ||| |||||  |||||   
 cgacguua     ucuug  c uA UGA  UCGGU UGC UGUUU  gaaag  a
a        ---aa     gc g  U   GC     U   U     ga     ua 

>aga-mir-1890 (-38.49)   [aga-miR-1890:61-80]

      -    cg      g     ug   u     u    gaauauu 
gucgug ugga  gccaga cuaau  gag auuuc ugag       u
|||||| ||||  |||||| |||||  ||| ||||| ||||        
cagcau gcuu  uggUCU GAUUA  UUC UAAAG acuc       u
      u    au      G     GU   -     U    gaacagu 

>aga-mir-1891 (-39.50)   [aga-miR-1891:23-45]

---  c  cu     u         UGA         UU        Uuaua 
   gc uc  cuuuu ccgucaugu   GGAGUUAAU  GCGUGUUU     u
   || ||  ||||| |||||||||   |||||||||  ||||||||      
   cg ag  gaaaa gguaguaca   ucucaauua  ugcacaaa     u
caa  -  -c     u         ugg         cc        uuagu 

>mmu-mir-1902 (-28.50)   [mmu-miR-1902:49-70]

--        u  ga             aa      uuga 
  guuuauuu gg  guguuugcuguau  uuggac    u
  |||||||| ||  |||||||||||||  ||||||     
  uagaugag UC  UACGGAUGACGUG  GAuuug    a
aa        U  AG             GA      uaaa 

>mmu-mir-1897 (-27.50)   [mmu-miR-1897-5p:11-32] [mmu-miR-1897-3p:48-69]

----auu    gug U          AA  AG      a  g 
       cucc   C UUGGAUGGAG  AG  GGGGga gu c
       ||||   | ||||||||||  ||  |||||| ||  
       gagG   G GGCCUGUCUU  UC  CUuccu cg g
accuagu    --A U          GC  AA      -  a 

>mmu-mir-1905 (-28.90)   [mmu-miR-1905:51-72]

--- u  u g        -   a  c u   a    -c       
   g gu g ucugcugc ugg ug g uug uggu  gcuccc 
   | || | |||||||| ||| || | ||| ||||  ||||| u
   c ca u gGAUGGCG ACC AC C GAC ACca  cggggu 
aug u  - g        C   -  C U   C    cc       

>mmu-mir-1895 (-41.80)   [mmu-miR-1895:48-69]

----c  aca          -          cc  -        
     cc   ccuuuuccuc uucuucuugg  gg guuggcu 
     ||   |||||||||| ||||||||||  || |||||| c
     gg   ggAGGAGGAG AGGAGGAGCC  Cc cgaccgc 
aguaa  --a          C          CC  u        

>mmu-mir-1903 (-34.30)   [mmu-miR-1903:11-32]

--         u -   C          -U   A   g  c 
  uuuuuuucc C CUU UUCUUCUUCC  GAG CAu gc c
  ||||||||| | ||| ||||||||||  ||| ||| ||  
  ggaaaaggg g gaa aaggagaagg  cuc gug cg g
ag         u u   c          uc   g   a  g 

>mmu-mir-1899 (-29.20)   [mmu-miR-1899:11-32]

--aaucu         --   -  C       -CU   u c    uagaa 
       uagucAGCG  AUG GC GAAUCUG   UCC c uggu     u
       |||||||||  ||| || |||||||   ||| | ||||      
       auuaguugc  uac cg cuuagac   agg g aucg     g
aauacac         cu   u  u       uuu   u a    uguaa 

>mmu-mir-1900 (-38.40)   [mmu-miR-1900:47-68]

gaagc    ----    --     a       ga      -a g 
     gugg    gaag  cuaga gagggcg  gccugg  g g
     ||||    ||||  ||||| |||||||  ||||||  |  
     cgcc    CUUC  GGUCU CUCCCGC  CGGgcc  c g
--ccc    uuaA    CU     -       --      ca a 

>mmu-mir-1892 (-19.80)   [mmu-miR-1892:49-70]

--uggauauau    -a      a  -a          aga 
           uucu  cucuug cc  aaguuuugua   a
           ||||  |||||| ||  ||||||||||    
           AGGA  GAGGGC GG  UUUAagacau   a
aagaguuucaU    GG      A  GG          aac 

>mmu-mir-1906-1 (-23.60)   [mmu-miR-1906:48-69]

ggacauuagga  ---aa   -   a          g  aauu 
           gc     ccu ccu ggguuguugu ag    a
           ||     ||| ||| |||||||||| ||    a
           cg     GGA GGA UCCGACGACG Uc    a
----ccagaga  ggUCG   C   G          -  aagu 

>mmu-mir-1896 (-36.40)   [mmu-miR-1896:50-71]

-aa        - -a         -   u  u    uu   a 
   ggcuuucc c  cacucauua cag ga gucu  ugg a
   |||||||| |  ||||||||| ||| || ||||  ||| c
   ccgggagG G  GUGGGUGGU GUC CU Cagg  acc g
agc        A GA         A   U  -    -u   a 

>mmu-mir-1904 (-23.90)   [mmu-miR-1904:11-32]

--     u  c   ----     UCCU            ucc  u 
  caagu ag uGU    UCUGC    CUGGAGGGAGGu   ug u
  ||||| || |||    |||||    ||||||||||||   ||  
  guuua uu aca    agaug    gacuucucucca   ac u
ac     u  u   aauu     ----            --c  g 

>mmu-mir-1898 (-29.20)   [mmu-miR-1898:11-32]

------    gaaca           UC     GG  -      au 
      guau     uAGGUCAAGGU  ACAGG  AU Caagaa  a
      ||||     |||||||||||  |||||  || ||||||   
      caua     auccaguuuca  ugucu  ua guucuu  u
uucgau    ----a           uu     aa  u      au 

>mmu-mir-1907 (-39.20)   [mmu-miR-1907:59-80]

---c      c a    ---c    -    u      c   cu  uuu 
    ccagcc c cucc    ccuc gcug cucuug ugg  ga   u
    |||||| | ||||    |||| |||| |||||| |||  ||   a
    ggucgg G GAGG    GGAG CGAC GAGggc auc  cu   a
ccca      U -    UCUA    A    -      c   cu  cuu 

>mmu-mir-1894 (-35.40)   [mmu-miR-1894-5p:11-32] [mmu-miR-1894-3p:50-71]

ucuuu   cu       CUAC     G -     c      g 
     guu  CUCUCCC    CACCU C CUCUu ccugcu u
     |||  |||||||    ||||| | ||||| ||||||  
     cga  ggGAGGG    GUGGG G GGGAA Ggacga g
--gac   cc       --AA     A A     C      g 

>mmu-mir-1893 (-43.80)   [mmu-miR-1893:52-73]

ccag     ---a    ua   ---   -             gua 
    agcgg    gagg  ucu   gcu gcgccugagauga   a
    |||||    ||||  |||   ||| |||||||||||||    
    ucgcc    CUCC  AGG   CGG CGCGGgcuuugcu   a
--cg     gaaG    GC   UCG   G             guc 

>mmu-mir-1901 (-39.60)   [mmu-miR-1901:47-68]

ga     ---a        -u    ga      uga     cc 
  ugggc    ggauuccc  gagu  acgagu   ggcgg  c
  |||||    ||||||||  ||||  ||||||   |||||   
  acccg    CCUGGGGG  CUCA  UGCUCG   CCguc  c
-a     aggc        CC    --      ---     ag 

>hsa-mir-1908 (-45.20)   [hsa-miR-1908:12-32]

----    aau    C       A     AU    Cc    g 
    cggg   gccg GGCGGGG CGGCG  UGGU  guau u
    ||||   |||| ||||||| |||||  ||||  |||| g
    gccc   cggc ccgccuc gccgc  gcca  cgug u
cccc    --c    c       g     cg    -c    g 

>hsa-mir-1909 (-41.30)   [hsa-miR-1909*:16-36] [hsa-miR-1909:49-70]

cauc    acaa       UG  -   G     C U   g 
    cagg    uggUGAG  CC GGU CCUGC C Ggg c
    ||||    |||||||  || ||| ||||| | ||| c
    gucu    GCCACUC  GG CCG GGACG g ccc g
cccc    --ac       GU  G   G     C u   u 

>hsa-mir-1910 (-34.20)   [hsa-miR-1910:12-32]

-  u    u  -gCCA       GC     G     gugcu 
 ug cccu ca     GUCCUGU  CUGCC CCUuu     g
 || |||| ||     |||||||  ||||| |||||      
 ac ggga gu     uaggacg  gacgg gggag     u
a  -    -  aacag       aa     a     guucc 

>hsa-mir-1911 (-33.80)   [hsa-miR-1911:12-34] [hsa-miR-1911*:49-68]

-uc   a  u  U   U     C       U    cau c 
   ggc uc gc GAG ACCGC AUGUCUG UGGG   c a
   ||| || || ||| ||||| ||||||| ||||   |  
   ucg ag cg CUC UGGUG UACGGAC ACcc   g c
guu   c  u  C   -     U       C    ucu a 

>hsa-mir-1912 (-31.00)   [hsa-miR-1912:46-67]

---     gg    g u         gg   u    a ua 
   cucua  augu c cauugcaug  cug guau g  u
   |||||  |||| | |||||||||  ||| |||| |  u
   gagau  uacA G GUGACGUAC  GAC CAUa c  a
uua     aa    A U         GA   C    a uu 

>hsa-mir-1913 (-38.10)   [hsa-miR-1913:49-70]

   -u    cucc      a     cu      -gc   c 
acc  cuac    cggcag ggagg  gcagag   ugg u
|||  ||||    |||||| |||||  ||||||   |||  
ugg  ggug    GUCGUC CCUCC  CGUCUc   acc u
   uc    aACC      G     CC      aaa   u 

>hsa-mir-1914 (-43.40)   [hsa-miR-1914:13-34] [hsa-miR-1914*:50-71]

c   u a    -g   U    CC     A       uucc 
 gug g gccc  CCC GUGC  GGCCC CUUCUGc    u
 ||| | ||||  ||| ||||  ||||| |||||||    c
 cac c cggG  GGG CACG  CUGGG GAGGacg    u
-   u c    GA   U    CC     -       cgau 

>hsa-mir-1915 (-49.00)   [hsa-miR-1915*:12-33] [hsa-miR-1915:47-66]

---ug  a      A       U  C     --     g   a 
     ag ggccgc CCUUGCC UG UGCCC  GGGCC ugc c
     || |||||| ||||||| || |||||  ||||| |||  
     uc ccggcg gGGGCGG GC GCGGG  CCCgg gug c
agcga  -      -       C  A     AC     -   c 

>mdv1-mir-M31 (-30.10)   [mdv1-miR-M31:43-65]

   ug  gc a      u      -     gugc 
ucc  ug  c gcucac ggcugu gcacu    g
|||  ||  | |||||| |||||| |||||    a
agg  AC  G CGAGUG CUGACA CGUga    u
   uA  UA A      -      U     aucu 

>bmo-mir-2a-1 (-37.60)   [bmo-miR-2a-1*:18-39] [bmo-miR-2a:54-76]

g     a  u       -G         C    U  C    gucau 
 gcgga ug agucgug  CAUCAAAGU GGUU GU AUAg     a
 ||||| || |||||||  ||||||||| |||| || ||||      
 ugucu ac ucagcaC  GUAGUUUCG CCGA CA UAUc     a
-     -  u       GA         A    -  C    aaugc 

>bmo-mir-2a-2 (-38.10)   [bmo-miR-2a-2*:13-34] [bmo-miR-2a:52-74]

aaugu           -     -       C     c   uuu 
     uucgucgCUCA CAAAG UGGUUGU GUAUG guu   a
     ||||||||||| ||||| ||||||| ||||| |||    
     aaguagCGAGU GUUUC ACCGACA UAUac cgg   c
-----           A     G       C     -   uuu 

>bmo-mir-2b (-40.60)   [bmo-miR-2b*:10-31] [bmo-miR-2b:46-68]

c   -              -         C    ggg u 
 gcu agaacUCGACAAGG UGGUUGUGA AUGg   c c
 ||| |||||||||||||| ||||||||| ||||   |  
 cgg ucuUGAGUUGUUUC ACCGACACU Uacu   g a
u   c              G         A    --a g 

>bmo-mir-13a (-27.50)   [bmo-miR-13a*:13-33] [bmo-miR-13a:50-70]

gauaauc      C        C   G    A   ucucc 
       ucgauC UGUCAAAG GGC GUGA Aug     u
       |||||| |||||||| ||| |||| |||      
       ggcugG GUAGUUUC CCG CACU Uac     c
---auuu      U        A   A    A   uuucc 

>bmo-mir-13b (-43.50)   [bmo-miR-13b*:14-35] [bmo-miR-13b:48-70]

guc         -     -             UC   u  c 
   cauggccca cUCGU AAAAAUGGCUGUG  GUG ag a
   ||||||||| ||||| |||||||||||||  ||| || a
   gugucgggu GAGCA UUUUUACCGACAC  Uac uc c
--u         U     G             UA   -  c 

>bmo-mir-79 (-47.40)   [bmo-miR-79*:23-44] [bmo-miR-79:55-80]

-cgccgccg      c     c       CG        CC    - auc 
         ggcgcg ugcga gCUUUGG  AUUUAGCU  GUGA c   a
         |||||| ||||| |||||||  ||||||||  |||| |    
         ccgcgc gcgcU CGAAACC  UAGAUCGA  UACU g   u
gcaacucug      u     A       AU        AA    U ccu 

>bmo-mir-87 (-40.90)   [bmo-miR-87:62-82]

---u  aga   u   ua        g       ucg      ag     uauu 
    ga   agu cgg  cacuaaug gccugaa   uugcuc  accug    u
    ||   ||| |||  |||||||| |||||||   ||||||  |||||     
    cu   ucg gcc  gugauUGU UGGACUU   AACGAG  Uggac    u
acau  -gg   -   --        G       UCA      --     cagc 

>bmo-mir-133 (-35.80)   [bmo-miR-133:64-85]

aaagcg      -u    c   u           cuuc  gu     u  cau 
      agagcg  uguu gcu uagcugguuga    gg  caaau gu   u
      ||||||  |||| ||| |||||||||||    ||  ||||| ||   u
      uuucgu  acaa uga GUCGACCAACU    CC  GUUua ua   u
------      cu    u   U           -UCC  UG     c  uac 

>bmo-mir-184 (-36.70)   [bmo-miR-184*:15-36] [bmo-miR-184:50-73]

     g  a             -      A GC  U  -  au 
gugca ug cgugcCCUUGUCA UUCUUC G  CC Gu gu  u
||||| || ||||||||||||| |||||| |  || || ||  u
caugu gc gcaCGGGAAUAGU AAGAGG C  GG CA ca  a
     -  c             C      - -A  U  u  ac 

>bmo-mir-210 (-39.40)   [bmo-miR-210:56-75]

        -  aaa   ---       gc   -         u  guca 
aaugaagu cc   gca   gcugcug  cac ugcacaaga ua    a
|||||||| ||   |||   |||||||  ||| ||||||||| ||     
uuacuuua gg   cgu   CGGCGAC  GUG GCGUGUUcu au    g
        c  --g   uaU       -A   U         c  auuu 

>bmo-mir-281 (-36.90)   [bmo-miR-281*:11-32] [bmo-miR-281:46-67]

      a           -UA     C      a  gc 
ucuguu augAAGAGAGC   UCCGU GACAGU uu  u
|||||| |||||||||||   ||||| |||||| ||  g
aggcaa uauUUCUCUCG   AGGUA CUGUCA aa  a
      g           UUG     -      c  au 

>bmo-mir-317 (-39.52)   [bmo-miR-317*:16-37] [bmo-miR-317:53-74]

      uc       C -        --      C  U   gaaaa 
gggcua  gaacgac G GGUGCCAC  GCUGUG UC CUc     u
||||||  ||||||| | ||||||||  |||||| || |||     u
cuugau  cuuguug c CUAUGGUG  CGACAC AG GAg     a
      cc       a u        GU      A  U   gcggu 

>bmo-bantam (-31.40)   [bmo-bantam*:18-40] [bmo-bantam:56-78]

uaaa      uac    C                  GA    u  u 
    aggaac   gaaa UGGUUUUCAUAAUGAUUU  CAga ug u
    ||||||   |||| ||||||||||||||||||  |||| || u
    uccuug   uuUU AUCGAAAGUGUUACUAGA  GUcu au u
augg      ---    A                  --    u  g 

>sly-MIR1916 (-136.60)   [sly-miR1916:38-57]

      c          -   c                           A   C       aa                   g        a   c          a 
gccuaa uuauugguga ccu uuaaauuuggcacgaaAUUUCACUUAG CAC UCAAgua  gugauguucauuuuagaca cucaugua ggu uuguuguguc u
|||||| |||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||| |||||||| ||| |||||||||| u
cggauu aguaaccacu gga aauuugaacugugcuuuaaagugaauc gug aguucau  cgcuacaaguaaaaucugu gaguacau cca aacaacauag u
      a          a   -                           c   a       -c                   g        c   a          u 

>sly-MIR1917 (-41.30)   [sly-miR1917:24-44]

u          uuaaau         ---A   A  AG G            c gg    a   aa ug 
 uuuagcggca      auugacAUU    AUA AG  U CUAAAGUcuuua c  uauu guu  g  u
 ||||||||||      |||||||||    ||| ||  | |||||||||||| |  |||| |||  |   
 aaaucgccgu      uaacuguga    uau uc  g gauuucggaaau g  guaa caa  u  c
a          ------         gaaa   a  ca g            c au    c   ga ua 

>sly-MIR1918 (-60.92)   [sly-miR1918:29-50]

       uaauuag       gu             AG                ---ac   -    ---c     ca 
guugguu       uugaauu  cauuuUGUUGGUG  AGUUCGAUUCUCcauu     gca aucu    cucuu  a
|||||||       |||||||  |||||||||||||  ||||||||||||||||     ||| ||||    |||||   
uaacuaa       aacuuga  guaagacaaucgc  ucaagcuaagaggugg     cgu uaga    gagaa  u
       -uucaua       ag             ca                aacau   a    aaaa     uu 

>sly-MIR1919a (-61.30)   [sly-miR1919a:91-111]

        g                        a    gu   uaagccccuuucucuaag 
aucuuccg uaguccugucgcagaugacucucg ucuu  cau                  u
|||||||| |||||||||||||||||||||||| ||||  |||                  c
uagaaggu auuaGGACAGUGUCUACUGAGAGC Agga  gug                  u
        -                        -    ug   uaacuuaaguuuaauuaa 

>sly-MIR1919b (-72.90)   [sly-miR1919b:97-117]

          uucac        gua                      cccauuuauggaaccacacuuuc 
gccuuugaug     aucuuccg   guccugucgcagaugacuuucg                       u
||||||||||     ||||||||   ||||||||||||||||||||||                       u
cggaaacuau     uagaaggu   uaGGACAGUGUCUACUGAGAGC                       u
          ugagc        -aa                      Aggaugguguaucuuaaguuuaa 

>sly-MIR1919c (-71.90)   [sly-miR1919c:97-117]

          uucac        gua                      c  auuuauaga      ---cu   uuu 
gccuuugaug     aucuuccg   guccugucgcagaugacuuucg cc         accaca     uuc   a
||||||||||     ||||||||   |||||||||||||||||||||| ||         ||||||     |||    
cggaaacuau     uagaaggu   uaGGACAGUGUCUACUGAGAGC gg         uggugu     aag   a
          ugagc        -aa                      A  --------a      aucuu   uuu 

>sly-MIR160a (-63.30)   [sly-miR160a:20-40]

-caa            -------u      C       CU            -   a     c  uaa 
    gucguguacacg        auaUGC UGGCUCC  GUAUGCCAuuug caa gcuca cg   u
    ||||||||||||        |||||| |||||||  |||||||||||| ||| ||||| ||    
    uaguauaugugc        uauacg accgagg  uaugcgguaagu guu cgggu gc   a
guug            uauagccu      a       ag            u   c     a  uau 

>sly-MIR166a (-51.20)   [sly-miR166a:86-106]

       a     uc               u     aa  a g   a     uga 
guugagg gaaug  gucugguucgagauc uucau  ga a gua augaa   c
||||||| |||||  ||||||||||||||| |||||  || | ||| |||||   a
caacuCC CUUAC  CGGACCAGGCUuuag aagug  cu u uau uacuu   a
       C     UU               u     --  a g   a     uug 

>sly-MIR166b (-76.92)   [sly-miR166b:154-174]

    a   aucaua       a  ucucu      a        uu      cu   g u   c   --ua   c          --a     -accaug     c 
uccc uag      uggagga gu     caguug ggggaaug  gucugg  cga g cac aau    gau cauaaucccu   uauau       cuuuu a
|||| |||      ||||||| ||     |||||| ||||||||  ||||||  ||| | ||| |||    ||| ||||||||||   |||||       ||||| a
aggg auc      aucuccu ca     guuaac CCCCUUAC  CGGACC  GCU u gug uug    cua guauugggga   guaua       gaaaa a
    g   -----g       -  ---uu      c        UU      AG   g u   a   ugua   a          aaa     auauuua     a 

>sly-MIR167 (-47.10)   [sly-miR167:19-39]

     -ca   c ag   u   A       G        Aaa        uu    ca 
ucgug   gca u  cag UGA GCUGCCA CAUGAUCU   cuuuccuu  aguu  a
|||||   ||| |  ||| ||| ||||||| ||||||||   ||||||||  ||||  a
agcac   cgu a  guc auu cgacggu guacuaga   gaaaggag  uuaa  u
     uac   a cu   c   c       -        cua        -c    ua 

>sly-MIR169a (-69.30)   [sly-miR169a:41-61]

      -ua   uuu      a uu         c  g   C         UG          c --a     ug 
ggucua   agg   gcauga g  gaagagagu aa uug AGCCAAGGA  ACUUGCCGGa c   aaagu  u
||||||   |||   |||||| |  ||||||||| || ||| |||||||||  |||||||||| |   |||||  g
ccagau   ucc   uguacu c  cuucucucg uu aau ucgguuuuu  ugaacggccu g   uuuua  a
      ugc   uau      - uu         u  g   a         gu          u auc     cc 

>sly-MIR169b (-82.14)   [sly-miR169b:171-191]

u     -uu    uu      -   -            uugacau         uu      a    a       aaaauagaaguuuuagucaucguuaaaau 
 uuuaa   uggu  caggca guc uccuuggcuacc       gcucuuuuc  uuaugc agau ucuuuuc                             a
 |||||   ||||  |||||| ||| ||||||||||||       |||||||||  |||||| |||| |||||||                              
 aaguu   gcca  GUCCGU CAG AGGAACCGAUgg       ugagaagag  aguacg ucug agagaag                             u
a     cau    -c      U   U            uuuauuc         -u      a    a       aaaauuuauucugaacauuggggcagagc 

>sly-MIR169c (-81.50)   [sly-miR169c:41-61]

     g      a         g   u             C                    g    ug a  c 
gucua agaguu uuguaugaa agg agggaguggagug AGCCAAGGAUGACUUGCCGA augu  u gc u
||||| |||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||  | || a
cagau uuucaa aauguacuu ucc ucucuuauuuuac ucgguuucuacuggacggcu uaca  a cg a
     a      -         a   -             a                    a    gu a  u 

>sly-MIR169d (-73.70)   [sly-miR169d:39-59]

     -               --    a      uauuua       A               -u   uu     u   guuuaa    a 
gaaga gggguuuuauaugaa  guug gaguau      gUAGCCA GGAUGACUUGCCUAc  uca  ugaua aua      aaua u
||||| |||||||||||||||  |||| ||||||      ||||||| |||||||||||||||  |||  ||||| |||      ||||  
cuucu uuccagaauguacuu  uaau cucgua      uaucggu ccuauugaacggaug  ggu  acugu uau      uuau a
     a               uu    g      caguuc       -               cu   uu     u   -aacag    a 

>sly-MIR171a (-45.20)   [sly-miR171a:87-107]

u    c  u    uu         c       c      ----   -     gua      au 
 gaaa ag aacu  gauauuggc ugguuca ucagac    aac aaaau   aacuau  u
 |||| || ||||  ||||||||| ||||||| ||||||    ||| |||||   ||||||   
 cuuu uc uuga  CUAUAACCG GCCGAGU AGUuug    uug uuuug   uuggua  u
a    c  u    cu         U       U      cuuu   c     -ag      ag 

>sly-MIR171b (-41.90)   [sly-miR171b:65-85]

   a        ug             a    cac    uua 
acg gauauugg  cgguucaauuaga agcg   uucu   u
||| ||||||||  ||||||||||||| ||||   ||||    
uGC CUAUAACC  GCCGAGUUaauuu uugc   aaga   a
   A        GU             a    uuc    uau 

>sly-MIR171c (-58.00)   [sly-miR171c:22-42]

   --au    --gaa      a                   G      c  u        a 
caa    ggau     uacacg gaUAUUGGUGCGGUUCAAU AGAaag ag acuuaaga c
|||    ||||     |||||| ||||||||||||||||||| |||||| || ||||||||  
guu    ucua     augugc cuauaaccgcgccgaguua uuuuuc uc ugaguuuu a
   gauu    aaucg      a                   g      a  -        u 

>sly-MIR171d (-44.00)   [sly-miR171d:75-94]

     ---------     c          a         c  a  -  -aa      cuu 
augga         agaag gauguuggug gguucaauc ga ga cg   uuuaug   a
|||||         ||||| |||||||||| ||||||||| || || ||   ||||||    
ugccu         ucuuC CUAUAACCGC CCGAGUUag cu cu gc   aaaugc   u
     uacuuuuau     A          G         a  -  a  aag      uuu 

>sly-MIR395a (-62.80)   [sly-miR395a:29-50]

       ---  --uuu       ga   -    C       U UG          -c    ugacuuugaaaauuacgcaaacaaguauauauaaaugcaug 
agggcuu   ac     gauguug  agc cuug UGAAGUG U  GGGGAACUCC  gggu                                         a
|||||||   ||     |||||||  ||| |||| ||||||| |  ||||||||||  ||||                                         g
uccugaa   ug     uuauaau  ucg gagu acuucac a  ucccuugagg  ucca                                         u
       guu  uuagu       --   a    -       c gu          uu    uguacuuaguuauaacaugaguaguagaaaucgauuaugca 

>sly-MIR395b (-45.70)   [sly-miR395b:66-87]

u      guu   ua         ug c       ug  g    a  uug 
 uaaggu   ccc  gaguucccu  a cacuuca  ag gcuu cu   a
 ||||||   |||  |||||||||  | |||||||  || |||| ||    
 auuuca   ggg  CUCAAGGGG  U GUGAAGU  uu cgaa ga   u
a      guu   uC         GU U       Cg  g    -  uug 

>sly-MIR397 (-56.60)   [sly-miR397:20-39]

     uac                  GC           cau uu    -   u   gc 
cagag   uuagaaacaugAUUGAGU  AGCGUUGAUGA   a  ugag aag ccu  a
|||||   ||||||||||||||||||  |||||||||||   |  |||| ||| |||   
gucuc   aauuuuuguacuagcuca  ucgcaacuacu   u  acuc uuc ggg  u
     -uu                  aa           --u uu    c   c   uu 

>xla-mir-1b (-17.60)   [xla-miR-1b:39-59]

--          u    gc     - ugaa 
  cauacuucuu auau  ccaua c    u
  |||||||||| ||||  ||||| |    g
  GUAUGAAGAA UGUA  GGUau g    c
AU          U    -A     c uaac 

>xla-mir-1306 (-33.90)   [xla-miR-1306:55-72]

-aa  agag  uc       uccccu  a        gug  gc 
   ga    cc  caccacc      gc aacgucca   ac  a
   ||    ||  |||||||      || ||||||||   ||   
   cu    gg  GUGGUGG      CG UUGCAggu   ug  g
aca  gaca  ua       ---UCU  G        -aa  ga 

>xla-mir-133b (-33.60)   [xla-miR-133b:47-67]

--    u         ca  c  a      u  g   u 
  cugc auggcuggu  aa gg accaag cc ucu c
  |||| |||||||||  || || |||||| || ||| c
  gacg uAUCGACCA  UU CC UGGUUu gg aga u
au    u         AC  C  C      -  -   u 

>xla-mir-133d (-30.62)   [xla-miR-133d:47-68]

- ug      -     -   aa   a   c   aaccc 
 c  guugcg cuggu gaa  gga cca auc     a
 |  |||||| ||||| |||  ||| ||| |||     g
 g  caaCGC GACCA CUU  CCU GGU uag     c
c gu      C     A   CC   -   U   gaaaa 

>xla-mir-142 (-39.70)   [xla-miR-142:14-33]

--       gc  c           A         u  aca ga 
  cagugca  ca cCAUAAAGUAG AAGCACUAC ag   g  c
  |||||||  || ||||||||||| ||||||||| ||   |  u
  gucaugu  gu gguauuucauc uuugugaug uc   c  g
gg       ga  a           c         -  --g aa 

>xla-mir-15c (-21.80)   [xla-miR-15c:14-35]

cuuugaggugaucUA     A  UC          gaaac 
               GCAGC CA  AUGGUUUGUA     a
               ||||| ||  ||||||||||      
               cgucg gu  uaccagacau     a
--------aguucuc     a  cu          agagg 

>xla-mir-194 (-32.20)   [xla-miR-194:15-36]

uagu  g       U         A      G    cuug 
    gu uaucggg GUAACAGCA CUCCAU UGGA    u
    || ||||||| ||||||||| |||||| ||||     
    ua guaguuu cauugucgu gaggug accu    c
--ac  g       u         a      -    uuuc 

>xla-mir-205 (-32.52)   [xla-miR-205:16-37]

cc     u   gc   C        C  C        ucuca 
  acgug ccu  ugU CUUCAUUC AC GGAGUCUG     u
  ||||| |||  ||| |||||||| || ||||||||     a
  uguac gga  aca gaagugag ug cuuuagac     c
ga     -   ga   c        a  a        uaaua 

>xla-mir-220c (-27.32)   [xla-miR-220c:19-40]

gaguug   -uguaug     ACC         --           agag gu 
      cgu       guuCU   ACUGUAUCA  GACACCUUugg    g  a
      |||       |||||   |||||||||  |||||||||||    |   
      gca       uagga   uggcguagu  uuguggaaauc    c  c
------   cuucuua     --c         ac           ---a aa 

>xla-mir-223 (-36.70)   [xla-miR-223:55-75]

u    gg    ga u              gagucc       a u 
 gugu  cacu  g guauuugacaagcu      gacacuc g g
 ||||  ||||  | ||||||||||||||      ||||||| | a
 cacg  guga  C CAUAAACUGUUUGA      CUGUgag c g
-    ga    aC C              ------       a a 

>xla-mir-23a (-33.80)   [xla-miR-23a:51-71]

cc     cg  gg        ag   g     uauuu   c 
  gacag  gg  auuccugg  aug gauuu     uug a
  |||||  ||  ||||||||  ||| |||||     |||  
  cuguc  CC  UAGGGACC  UAC CUAaa     aac g
--     aa  UU        GU   A     ----u   c 

>xla-mir-24b (-24.40)   [xla-miR-24b:45-65]

    c  a   a         uaa    u  uua 
cucc gu ucu cugggcuga   ucag gg   u
|||| || ||| |||||||||   |||| ||   a
gagG CA GGA GACUUGACU   GGUc cc   a
    A  -   C         --C    c  uuc 

>xla-mir-363 (-32.30)   [xla-miR-363:13-34]

u     u   cg         CA  A         a   aagu 
 uuugu guu  CGGGUGGAU  CG UGCAAUUUu uuu    u
 ||||| |||  |||||||||  || ||||||||| |||    u
 agacg caa  gucuaccua  gc acguuaaaa gag    g
a     c   au         ug  -         a   gaug 

>xla-mir-703 (-21.70)   [xla-miR-703:29-49]

ag       aa   u   -    caucg      CU   G --A          uug 
  acugguu  uga aac aaug     uAAAAC  UCA A   GGAAAGAAug   u
  |||||||  ||| ||| ||||     ||||||  ||| |   ||||||||||    
  ugacuaa  acu uug uuau     auuuug  ggu u   uuuuuuuuac   g
--       -a   u   a    --uga      ac   g gug          cag 

>xla-mir-92a-1 (-36.00)   [xla-miR-92a:49-69]

cu     u            u   u           cu 
  uucug auagguugggau ggu gcaaugcugua  a
  ||||| |||||||||||| ||| |||||||||||  u
  aggau uGUCCGGCCCUG UCA CGUUAUgaugu  u
gu     u            U   -           au 

>xla-mir-92a-2 (-30.50)   [xla-miR-92a:49-69]

  c    ug   g     uu  u   c     -gu  u 
uc ucug  ggu gggau  gu gca uacuu   gu u
|| ||||  ||| |||||  || ||| |||||   ||  
ag aggu  CCG CCCUG  CA CGU AUgaa   ua u
  u    GU   G     UU  -   U     aau  u 

>bmo-mir-1923 (-19.10)   [bmo-miR-1923:60-87]

ucgaaacu      --   --a        cuu    aacuuuuu      a 
        ugccau  uua   aauggugc   cgau        ucauua u
        ||||||  |||   ||||||||   ||||        |||||| u
        gCGGUG  GAU   UUGCCAUG   GCUA        aguaau u
-------g      CC   ACG        --C    -----AUc      u 

>bmo-mir-1926 (-36.10)   [bmo-miR-1926:64-84]

gug     ua   c          -  aa          caacuacuu g 
   gcagu  uuu guuuuagaau cc  acgcuuugcc         g c
   |||||  ||| |||||||||| ||  ||||||||||         |  
   cgucG  AAA CGAAAUCUUA GG  ugcgaaaugg         c a
-ua     GA   A          A  -A          --------- a 

>ptr-let-7a-1 (-35.30)   [ptr-let-7a:5-26]

-    U   GU                uuagggucacac 
 ggga GAG  AGUAGGUUGUAUAGUU            c
 |||| |||  ||||||||||||||||            c
 uccu uuc  ucaucuaacauaucaa            a
a    -   ug                uagagggucacc 

>ptr-let-7a-2 (-23.80)   [ptr-let-7a:5-26]

a  uU   G   U             uagaa ua a 
 gg  GAG UAG AGGUUGUAUAGUU     u  c u
 ||  ||| ||| |||||||||||||     |  | c
 cc  uuc auc uccgacaugucaa     a  g a
-  -u   g   c             --uag gg a 

>ptr-let-7a-3 (-34.00)   [ptr-let-7a:3-24]

-  U   GU                ---------        
 gg GAG  AGUAGGUUGUAUAGUU         uggggcu 
 || |||  ||||||||||||||||         |||||| c
 cc uuc  ucaucuaacauaucaa         gucccgu 
u  u   ug                uaggguauc        

>ptr-let-7b (-45.80)   [ptr-let-7b:5-26]

-    U                     ----  ---a      u 
 gggg GAGGUAGUAGGUUGUGUGGUU    uc    gggcag g
 |||| |||||||||||||||||||||    ||    |||||| a
 uccc uuccgucauccaacauaucaa    ag    cccguu u
g    -                     uaga  acuc      g 

>ptr-let-7c (-32.40)   [ptr-let-7c:10-31]

ca      uU   G   U             ua  g ua a 
  uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
  ||||||  ||| ||| |||||||||||||  || |  | c
  agguuc  uuc auc uccaacaugucaa  uu a  g c
cg      cu   g   u             --  g gg u 

>ptr-let-7d (-40.60)   [ptr-let-7d:7-28]

-      A              C      uuagggcagggauu 
 cuagga GAGGUAGUAGGUUG AUAGUU              u
 |||||| |||||||||||||| ||||||               
 gauucu uuccgucguccagc uaucaa              u
g      -              a      uggaggaacacccg 

>ptr-let-7e (-36.90)   [ptr-let-7e:7-28]

-cc   cU   G                U  ----gga  a 
   ggg  GAG UAGGAGGUUGUAUAGU ga       gg c
   |||  ||| |||||||||||||||| ||       ||  
   ccc  uuc auccuccggcauauca cu       cc a
gga   cu   g                -  agaggaa  c 

>ptr-let-7f-1 (-42.50)   [ptr-let-7f:6-27]

-   a UG                      ---------       u 
 cag g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
 ||| |  ||||||||||||||||||||||         ||||||| a
 guc c  uccguuaucuaacauaucaaua         ucccauu u
a   - cu                      gaggacuug       u 

>ptr-let-7f-2 (-39.00)   [ptr-let-7f:8-29]

u      U   GU                uuagggucauac 
 guggga GAG  AGUAGAUUGUAUAGUU            c
 |||||| |||  ||||||||||||||||             
 cacccu uuc  ucaucugacauaucaa            c
-      -   ug                uagagguucuac 

>ptr-let-7g (-38.80)   [ptr-let-7g:5-26]

a   U        A            ugagg    -a  a    a 
 ggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
 ||| |||||||| ||||||||||||     ||||  || ||||  
 ccg uuccguca cggacaugucaa     uaga  ac augg c
-   -        c            -----    gg  -    c 

>ptr-let-7i (-38.70)   [ptr-let-7i:6-27]

cu   U                 U   --------  u     ugu 
  ggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
  ||| ||||||||||||||||| |||        || |||||   a
  ucg uuccgucaucgaacgcg caa        uc gcccg   c
--   -                 u   uagaggug  -     uua 

>ptr-mir-101-2 (-30.30)   [ptr-miR-101:48-69]

- ug  c                    c a    guaua 
 c  uc uuuuucgguuaucaugguac g ugcu     u
 |  || |||||||||||||||||||| | ||||      
 g  gg aaGAAGUCAAUAGUGUCAUG C AUgg     c
u gu  u                    A -    aaagu 

>ptr-mir-103-2 (-28.10)   [ptr-miR-103:47-69]

-u  g      --   u  u           ----    ua 
  gu cuuuca  gcu cu uacagugcugc    cuug  g
  || ||||||  ||| || |||||||||||    ||||  c
  ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
ac  a      AU   -  C           Aacu    uu 

>ptr-mir-10a (-32.39)   [ptr-miR-10a:21-43]

------auc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguaua gggg aucua gcuuaaacac       u
ucucgccuc   aau    uu        a    -     u          ugguguu 

>ptr-mir-10b (-45.00)   [ptr-miR-10b:26-48]

ca      guaa     u        A    G     C          -ug   u 
  gagguu    cguug cuauauaU CCCU UAGAA CGAAUUUGUG   gua c
  ||||||    ||||| |||||||| |||| ||||| ||||||||||   |||  
  cuucaa    guagc gguauaua gggg aucuu gcuuagacac   uau c
-a      aaac     u        a    -     a          uga   g 

>ptr-mir-1-1 (-30.00)   [ptr-miR-1:45-66]

-    a                gc     ---   a 
 ggga acauacuucuuuauau  ccaua   ugg c
 |||| ||||||||||||||||  |||||   ||| c
 cucU UGUAUGAAGAAAUGUA  GGUau   auc u
a    A                -A     cga   g 

>ptr-mir-1178 (-36.10)   [ptr-miR-1178:56-76]

gg    g      gagga       gg ccg    c g     ca 
  guug cuggca     agggaag  u   gggu g cugag  u
  |||| ||||||     |||||||  |   |||| | |||||   
  uagu gacugu     UCCCUUC  G   CUCG U gacuc  g
-g    g      -aaGA       UU UCA    U g     cc 

>ptr-mir-1179 (-33.20)   [ptr-miR-1179:14-34]

-     -----      a   --         C        Gu ugua 
 gcugg     aaagga gAA  GCAUUCUUU AUUGGUUG  g    u
 |||||     |||||| |||  ||||||||| ||||||||  |     
 cgauc     uuuccu uuu  cguaggaga uaaccaac  u    u
u     agucu      a   ac         a        ug uccg 

>ptr-mir-1181 (-40.20)   [ptr-miR-1181:14-34]

u    -     ----        --   ---  CA   G    Gg 
 ccac ugcug    ccaCCGUC  GCC   GC  CCC AGCC  a
 |||| |||||    ||||||||  |||   ||  ||| ||||   
 ggug gcgac    ggugguag  cgg   cg  ggg ucgg  g
-    u     auca        aa   aac  cc   -    gc 

>ptr-mir-1182 (-34.60)   [ptr-miR-1182:62-84]

g  a   g   cu  cu   u c      u    cagc    gga       g 
 gg cuu uca  gc  guc c ucccuc ccag    gacu   uucugga u
 || ||| |||  ||  ||| | |||||| ||||    ||||   ||||||| c
 cc gaa ggu  ug  CAG G AGGGAG GGUU    CUGG   GAGaucu c
-  -   g   --  -u   U U      -    ----    ---       a 

>ptr-mir-1183 (-21.70)   [ptr-miR-1183:47-73]

-u     aaa     g a -a   agaa     ga aag    ga 
  uauuc   ugcuc g g  cac    cauua  g   acag  g
  |||||   ||||| | |  |||    |||||  |   ||||  u
  gugag   acgag u C  GUG    GUGGU  U   UGUC  u
cc     --g     g A GG   -AGA     AG GGA    AC 

>ptr-mir-1184 (-27.00)   [ptr-miR-1184:61-83]

c ug a   c    ugaa      g   ---c    ca    ucaaca    cca 
 u  c gaa gagg    ggaggu guu    ugcu  gcag      gugg   c
 |  | ||| ||||    |||||| |||    ||||  ||||      ||||    
 g  g cuu uucc    CCUUCG UAG    GCGA  CGUC      Cacc   a
- gu -   -    ugug      G   UUCA    --    ------    ucu 

>ptr-mir-1185-1 (-34.80)   [ptr-miR-1185:14-34]

-       u    -     GA A              a  uga 
 uugguac ugaa gAGAG  U CCCUUUGUAUGUUc cu   u
 ||||||| |||| |||||  | |||||||||||||| ||    
 aacuaug guuu uucuc  a gggggacauauaag gg   u
a       c    a     ag -              c  uaa 

>ptr-mir-1185-2 (-38.30)   [ptr-miR-1185:14-34]

-       u    -     GA A              a  uga 
 uugguac uaaa gAGAG  U CCCUUUGUAUGUUc cu   u
 ||||||| |||| |||||  | |||||||||||||| ||    
 aacuaug guuu cucuc  a gggggacauauaag gg   u
a       c    a     ag -              c  uaa 

>ptr-mir-1197 (-26.40)   [ptr-miR-1197:56-76]

cuuccu      -u     ugc   u       gug g    - uuu 
      gguauu  gaaga   ggu gaccaug   u uacg c   a
      ||||||  |||||   ||| |||||||   | |||| |   u
      cuauaa  cuUCU   UCA CUGGUAC   G AUgc g   u
-----a      cu     ---   U       ACA G    a ugu 

>ptr-mir-1-2 (-35.24)   [ptr-miR-1:53-74]

a      c                     ac     ugaaca 
 ccuacu agaguacauacuucuuuaugu  ccaua      u
 |||||| |||||||||||||||||||||  |||||       
 ggaugg uuuUAUGUAUGAAGAAAUGUA  GGUau      a
-      u                     -A     cguaac 

>ptr-mir-1201 (-19.21)   [ptr-miR-1201:52-75]

uuuac       -  u  ugaaau      uaagucc  -guu    -  g 
     aguuugc ca ga      gcaugu       gu    ucag cu a
     ||||||| || ||      ||||||       ||    |||| ||  
     ucagacg GU CU      CGUACA       CA    AGUC GA u
---aa       A  -  ------      -------  AAUU    C  c 

>ptr-mir-1202 (-34.10)   [ptr-miR-1202:12-32]

cug   -caga  UG  A    - --  UG   GA    cu  c 
   cug     gG  CC GCUG C  AG  GGG  Ggca  gc a
   |||     ||  || |||| |  ||  |||  ||||  ||  
   gac     cc  gg cgac g  uc  cuc  ccgu  cg g
--g   aagaa  gu  a    c au  gu   ac    --  g 

>ptr-mir-1203 (-35.80)   [ptr-miR-1203:5-25]

   c -    A    G   GCAG  Ca      c c      u 
ccu C CCGG GCCA GAU    CU  agccac g ggggug u
||| | |||| |||| |||    ||  |||||| | |||||| u
gga g gguc cggu uua    ga  ucggug c ucucgc a
   c u    g    g   ----  cc      a u      g 

>ptr-mir-1204 (-23.20)   [ptr-miR-1204:3-23]

-c U  U   CUG   UC    A  ug     a 
  c CG GGC   GUC  CAUU Uu  agaug g
  | || |||   |||  |||| ||  ||||| u
  g gc ccg   cag  gugg ag  ucuac u
ua u  u   -ug   ga    -  gu     a 

>ptr-mir-1205 (-23.90)   [ptr-miR-1205:7-26]

-a    cU --U        U  UUU    u 
  aggc  C   GCAGGGUU GC   GAGg a
  ||||  |   |||||||| ||   |||| c
  ucug  g   ugucccaa ug   uucc u
ug    ag ucu        c  ucc    u 

>ptr-mir-1206 (-17.50)   [ptr-miR-1206:3-23]

-         G   -A   UU    u  ug 
 agUGUUCAU UAG  UGU  AAGC cu  c
 ||||||||| |||  |||  |||| ||   
 ucgcaagug auc  acg  uuug ga  a
g         -   ga   uu    -  ug 

>ptr-mir-1207 (-38.50)   [ptr-miR-1207:51-68]

cagggcug      ag    -----   ----     ug     -    gg 
        gcaggg  gcug     gga    ggggc  gcugg gccu  u
        ||||||  ||||     |||    |||||  ||||| ||||   
        ugucuu  cgac     uCU    UCCCG  CGACU cggg  a
--------      ca    agaau   UUAC     GU     a    ug 

>ptr-mir-1208 (-22.40)   [ptr-miR-1208:11-30]

--    g   -aaUC   GU     CA    -    cg 
  accg cag     ACU  UCAGA  GGCG GAga  g
  |||| |||     |||  |||||  |||| ||||   
  uggu guc     uga  agucu  ccgc cuuu  g
gg    -   accac   gu     -c    u    cu 

>ptr-mir-122 (-45.60)   [ptr-miR-122:14-35]

-        -      GG       C           ugucu 
 cuuagcag agcugU  AGUGUGA AAUGGUGUUUG     a
 |||||||| ||||||  ||||||| |||||||||||      
 ggaucguc ucgaua  ucacacu uuaccgcaaac     a
c        a      aa       a           uauua 

>ptr-mir-1225 (-49.70)   [ptr-miR-1225:69-89]

guggguacggcccagu     -  - g    acacgcccugggcucugccca 
                ggggg gg a aggg                     g
                ||||| || | ||||                      
                CCCCC CC U UCCC                     g
---------------A     G  G G    CGAGUcagucaggccgacgug 

>ptr-mir-1227 (-37.60)   [ptr-miR-1227:69-87]

g     cc   c      ---   -  cugcuggggugggcacag 
 ugggg  agg gguggu   ggg ca                  c
 |||||  ||| ||||||   ||| ||                  a
 ACCCC  UUC CCACCG   ccc gu                  g
-     UU   -      UGC   a  uuacggacgagacguacc 

>ptr-mir-1233-1 (-48.70)   [ptr-miR-1233:63-82]

guga        c      augg    ggga    ca     guc 
    gugggagg cagggc    cagg    gcug  gggcc   g
    |||||||| ||||||    ||||    ||||  |||||    
    CGCCCUCC GUCCCG    GUcu    cgac  cccgg   g
-gGA        U      ---A    ---a    --     gga 

>ptr-mir-1233-2 (-41.60)   [ptr-miR-1233:63-82]

guga        c   u  acgg    ggga    ca     guc 
    gugggagg cag gc    cagg    gcug  gggcc   g
    |||||||| ||| ||    ||||    ||||  |||||    
    CGCCCUCC GUC CG    GUcu    cgac  cccgg   g
-gGA        U   C  ---A    ---g    --     gga 

>ptr-mir-1233-3 (-41.60)   [ptr-miR-1233:61-80]

uga        -   u  acgg    ggga    ca     guc 
   gugggagg cag gc    cagg    gcug  gggcc   g
   |||||||| ||| ||    ||||    ||||  |||||    
   CGCCCUCC GUC CG    GUcu    cgac  cccgg   g
-GA        U   C  ---A    ---g    --     gga 

>ptr-mir-1234 (-37.90)   [ptr-miR-1234:51-72]

gugag    a     cug  gg      ---   ac   u 
     ugug ggugg   gg  gggccg   ggg  ggc u
     |||| |||||   ||  ||||||   |||  |||  
     aCAC CCACC   CC  UCCGGC   ucc  ccg g
-----    C     -CA  AG      Uga   gu   g 

>ptr-mir-1236 (-38.30)   [ptr-miR-1236:81-101]

- u   u    -      au    auggacuggaagugggcagcauggagcu 
 g gag gaca ggggaa  gggg                            g
 | ||| |||| ||||||  ||||                             
 C CUC CUGU CCCCUU  CUCC                            a
A -   U    U      --    guaauacaaccgguucgguacuacuucc 

>ptr-mir-1237 (-58.10)   [ptr-miR-1237:81-101]

-    a    cca  c     c      g g   g  aga     ---      g 
 uggg gggc   gg gcggg aggggu g ggu gc   gcgcu   gucccg g
 |||| ||||   || ||||| |||||| | ||| ||   |||||   ||||||  
 ACCC CCUG   CC CGUCU UCCUca u cca cg   cgcga   cggggc g
G    -    ---  U     -      a g   g  --g     agc      g 

>ptr-mir-1244-1 (-15.22)   [ptr-miR-1244:54-79]

-----uc    uc  a   uu    ua    uuuuguguau    uu 
       uuau  cg gca  ccag  acuu          guac  a
       ||||  || |||  ||||  ||||          ||||   
       GGUA  GU UGU  GGUU  UGAA          caug  g
aaaaaUU    GA  A   UU    GA    -------ugu    uc 

>ptr-mir-1244-2 (-16.00)   [ptr-miR-1244:54-79]

-----uc    uc  a   uu    ua   uuuuug    u    uu 
       uuau  cg gca  ccag  acu      ugua guac  a
       ||||  || |||  ||||  |||      |||| ||||   
       GGUA  GU UGU  GGUU  UGA      Auau caug  g
aaaaaUU    GA  A   UU    GA   ------    -    uc 

>ptr-mir-1244-3 (-16.00)   [ptr-miR-1244:54-79]

-----uc    uc  a   uu    ua   uuuuug    u    uu 
       uuau  cg gca  ccag  acu      ugua guac  a
       ||||  || |||  ||||  |||      |||| ||||   
       GGUA  GU UGU  GGUU  UGA      Auau caug  g
aaaaaUU    GA  A   UU    GA   ------    -    uc 

>ptr-mir-1244-4 (-16.70)   [ptr-miR-1244:55-80]

--------       uccga   uu    ua   uuuuug    u    uc 
        aucuuau     gca  ccag  acu      ugua guac  a
        |||||||     |||  ||||  |||      |||| ||||   
        UAGAGUA     UGU  GGUU  UGA      Auau caug  g
aaaaUUGG       -----   UU    GA   ------    -    uc 

>ptr-mir-1244-5 (-16.00)   [ptr-miR-1244:54-79]

-----uc    uc  a   uu    ua   uuuuug    u    uu 
       uuau  cg gca  ccag  acu      ugua guac  a
       ||||  || |||  ||||  |||      |||| ||||   
       GGUA  GU UGU  GGUU  UGA      Auau caug  g
aaaaaUU    GA  A   UU    GA   ------    -    uc 

>ptr-mir-1244-6 (-16.00)   [ptr-miR-1244:54-79]

-----uc    uc  a   uu    ua   uuuuug    u    uu 
       uuau  cg gca  ccag  acu      ugua guac  a
       ||||  || |||  ||||  |||      |||| ||||   
       GGUA  GU UGU  GGUU  UGA      Auau caug  g
aaaaaUU    GA  A   UU    GA   ------    -    uc 

>ptr-mir-1244-7 (-15.50)   [ptr-miR-1244:54-79]

----------      ucuga   uu    ua   uuuuug    u    uu 
          ucuuau     gca  ccag  acu      ugua guac  a
          ||||||     |||  ||||  |||      |||| ||||   
          AGAGUA     UGU  GGUU  UGA      Auau caug  g
aaaaaUUGGU      -----   UU    GA   ------    -    uc 

>ptr-mir-1244-8 (-16.70)   [ptr-miR-1244:55-80]

--------       uccga   uu    ua   uuuuug    u    uu 
        aucuuau     gca  ccag  acu      ugua guac  a
        |||||||     |||  ||||  |||      |||| ||||   
        UAGAGUA     UGU  GGUU  UGA      Auau caug  g
aaaaUUGG       -----   UU    GA   ------    -    uc 

>ptr-mir-1244-9 (-15.40)   [ptr-miR-1244:54-79]

-----uc    uc  a   uu    ua    uuuugu     uac 
       uuau  cg gca  ccag  acuu      guaua   u
       ||||  || |||  ||||  ||||      |||||    
       GGUA  GU UGU  GGUU  UGAA      caugu   u
aaaaaUU    GA  A   UU    GA    ---uau     cga 

>ptr-mir-1244-10 (-15.90)   [ptr-miR-1244:54-79]

-----uc    uc  a   uu    ua    uuuugc   u    uu 
       uuau  cg gca  ccag  acuu      gua guac  a
       ||||  || |||  ||||  ||||      ||| ||||   
       GGUA  GU UGU  GGUU  UGAA      uau caug  g
aaaaaUU    GA  A   UU    GA    ------   -    uc 

>ptr-mir-1244-11 (-16.70)   [ptr-miR-1244:55-80]

--------       uccga   uu    ua   uuuuug    u    uu 
        aucuuau     gca  ccag  acu      ugua guac  a
        |||||||     |||  ||||  |||      |||| ||||   
        UAGAGUA     UGU  GGUU  UGA      Auau caug  g
aaaaUUGG       -----   UU    GA   ------    -    uc 

>ptr-mir-1245 (-24.40)   [ptr-miR-1245:44-64]

--uu      uaa            uc   --u  u 
    uaugua   gccuuuagauca  uga   gu g
    ||||||   ||||||||||||  |||   || a
    aUACAU   CGGAAAUCUAGU  Auu   ca a
aaau      --C            GA   ucu  u 

>ptr-mir-1246 (-19.21)   [ptr-miR-1246:11-29]

-   -au   ugA       -------     AG    a u 
 ugu   ccu   AUGGAUU       UUUGG  CAGG g g
 |||   |||   |||||||       |||||  |||| |  
 acg   gga   uaccuaa       aaacc  gucc c g
a   auc   ---       cuaaagg     ca    a a 

>ptr-mir-1247 (-56.90)   [ptr-miR-1247:40-61]

-     ugc    ---c  a   c  cccc   -  --c       A  C   C  UU   C     Ac  ugc 
 ccgcu   cucg    cc gcg ag    ggc cg   ugggcgc CC GUC CG  CGU CCCGG  gu   u
 |||||   ||||    || ||| ||    ||| ||   ||||||| || ||| ||  ||| |||||  ||    
 ggcga   gagc    gg cgc uc    ccg gu   gcccgcg gg cag gc  gca gggcc  ca   c
c     ---    ccca  -   u  --ca   a  caa       a  u   a  -u   a     -c  ucu 

>ptr-mir-1248 (-34.50)   [ptr-miR-1248:3-29]

---------uuAC        AUAA C   G     ---AA        c          
             CUUCUUGU    G ACU UGCUA     auugcaga acuaggacc 
             ||||||||    | ||| |||||     |||||||| |||||||| a
             gaagaaca    c uga acgau     uaacguuu ugguucugu 
acgacaaugaaaa        --ca a   g     cguaa        u          

>ptr-mir-1249 (-32.70)   [ptr-miR-1249:41-62]

---g         a  a  u    caa     cuc 
    ggaggaggg gg ga gggc   guucc   u
    ||||||||| || || ||||   |||||    
    CUUCUUCCC CC CU CCCG   CAagg   g
uccA         -  C  U    ---     ucg 

>ptr-mir-1250 (-53.10)   [ptr-miR-1250:24-44]

-    -c     ------   -    c    -  -C  U      ---          uugc 
 cugu  ccgcu      ggc cugg aggu gA  GG GCUGGA   UGUGGCCUUU    c
 ||||  |||||      ||| |||| |||| ||  || ||||||   ||||||||||    u
 gaca  gguga      ccg gacc ucca cu  cc cgaccu   acaccggaaa    u
g    cc     agucuc   a    u    a  ua  -      uuu          ucuu 

>ptr-mir-1251 (-20.20)   [ptr-miR-1251:4-24]

----  --g  U  A    CCA         --c  c 
    ug   AC CU GCUG   AAGGCGCUu   uc u
    ||   || || ||||   |||||||||   || u
    ac   ug ga cgac   uuucgcgag   ag c
cggu  aga  u  c    ucg         aca  u 

>ptr-mir-1253 (-47.50)   [ptr-miR-1253:24-44]

a  --ag  a    ua      a    A A                gaug   a 
 gc    ca gaga  gaaucc aaAG G AGAAGAUCAGCCUGCA    ugg c
 ||    || ||||  |||||| |||| | ||||||||||||||||    |||  
 cg    gu uucu  cuuagg uuuc c ucuucuagucggacgu    auc u
c  aaga  a    --      g    c c                --aa   g 

>ptr-mir-1254 (-37.50)   [ptr-miR-1254:17-40]

gu  g      ---gc   -A      AA       CC       -a  ua 
  gg aggauu     uug  GCCUGG  GCUGGAG  UGCAGUg  ac  u
  || ||||||     |||  ||||||  |||||||  |||||||  ||  c
  cu uccuaa     aac  cggauc  cgaccuu  augucac  ug  a
au  g      aguaa   aa      --       --       cg  uu 

>ptr-mir-1255b (-40.10)   [ptr-miR-1255b:5-26]

--    C                      g gc 
  cuua GGAUGAGCAAAGAAAGUGGUUu c  c
  |||| |||||||||||||||||||||| |  u
  gaau ccuacucguuucuuucaccaaa g  c
ag    a                      - aa 

>ptr-mir-1256 (-50.52)   [ptr-miR-1256:35-56]

-----     gc          uuugaagcuuu    c  G             AC      u a 
     aguca  cuguugaagc           gaug cA GCAUUGACUUCUC  UAGCUa g a
     |||||  ||||||||||           |||| || |||||||||||||  |||||| | a
     ucggu  gauaacuuug           cuac gu cguaacugaagag  aucgau c g
cuuug     -a          ---------uu    a  a             aa      c u 

>ptr-mir-1258 (-60.60)   [ptr-miR-1258:44-64]

-                              ugcg 
 cuguggcuuccacgaccuaauccuaacucc    a
 ||||||||||||||||||||||||||||||    g
 gacaccgAAGGUGCUGGAUUAGGAUUGAgg    u
g                              uccc 

>ptr-mir-1259 (-31.15)   [ptr-miR-1259:15-35]

---aac   cu          AU   ---    UA    UUuuccccgac          
      uuc  gcuggcAUAU  GAU   GACU  GCUU           agaucgacu 
      |||  ||||||||||  |||   ||||  ||||           |||||||| a
      gag  cgaccguaua  cug   uuga  cgaa           ucuaguugu 
cucgac   uu          gu   ucu    -c    --ucuuuucaa          

>ptr-mir-125a (-48.40)   [ptr-miR-125a:52-73]

-     u u     uc  ug   c    ua        ----  a 
 gccag c cuagg  cc  aga ccuu  accuguga    gg c
 ||||| | |||||  ||  ||| ||||  ||||||||    ||  
 cgguc g gguCC  GG  UCU GGAG  UGGACAcu    cc a
c     u u     GA  GU   U    --        ggga  u 

>ptr-mir-126 (-39.90)   [ptr-miR-126:51-72]

-    gc     - a           u       c cug   c 
 gcug  gacgg g cauuauuacuu ugguacg g   uga a
 ||||  ||||| | ||||||||||| ||||||| |   |||  
 cggc  cugcc C GUAAUAAUGAG GCCAUGC c   acu c
a    ac     G -           U       U -aa   u 

>ptr-mir-1262 (-23.31)   [ptr-miR-1262:14-35]

-   u     ---g  gAU    G  -------   G         gaaag 
 auc acaau    gu   GGGU AA       UUU UAGAAGGAU     u
 ||| |||||    ||   |||| ||       ||| |||||||||      
 uag uguua    ca   uccg uu       aag gucuuccua     c
a   -     agaa  acu    g  uuuaauc   g         agaaa 

>ptr-mir-1263 (-61.00)   [ptr-miR-1263:13-34]

-                    C               u   a 
 cuaccccaaaauAUGGUACC UGGCAUACUGAGUau uua u
 |||||||||||||||||||| ||||||||||||||| |||  
 gaugggguuuuauaccgugg accguaugacucaua ggu a
c                    u               c   c 

>ptr-mir-1264 (-18.06)   [ptr-miR-1264:41-63]

---------   c     -    u        aaagaa 
         ggu cucaa uaag auuuguug      u
         ||| ||||| |||| ||||||||      a
         CCA GAGUU AUUC UGAACaac      a
guguaUUGU   C     U    -        caaaua 

>ptr-mir-1265 (-28.10)   [ptr-miR-1265:13-34]

cgguuugggacuCA                    aag  au 
              GGAUGUGGUCAAGUGUUGUU   gc  g
              ||||||||||||||||||||   ||  u
              uuuacaccaguucauaacaa   cg  u
--------------                    ---  ac 

>ptr-mir-1266 (-58.30)   [ptr-miR-1266:13-35]

-   --gg                U             --  g 
 aca    uagugucCCUCAGGGC GUAGAACAGGGCU  gg a
 |||    |||||||||||||||| |||||||||||||  || u
 ugu    gucacagggagucccg uaucuugucccga  uc u
c   acga                -             aa  a 

>ptr-mir-1267 (-45.20)   [ptr-miR-1267:12-32]

-   --         C                   ccuc 
 cuc  ccaaaucuC UGUUGAAGUGUAAUCCCCA    c
 |||  ||||||||| |||||||||||||||||||     
 gag  gguuuagag acaacuuuacauuaggggu    a
a   ua         u                   uacg 

>ptr-mir-1271 (-50.40)   [ptr-miR-1271:14-35]

--a  -   au             C     A           a 
   cc cag  cagugCUUGGCAC UAGCA GCACUCAguaa u
   || |||  ||||||||||||| ||||| |||||||||||  
   gg guc  guuacggaccgug aucgu cgugaguuguu a
uug  a   gu             u     c           c 

>ptr-mir-1272 (-40.60)   [ptr-miR-1272:20-45]

-    au      --u   ug G    U AUG     ---A A      --AA   u   cagug    ua 
 ccag  cagauc   ggg  c AUGA G   GCAGC    A UUCUGA    acg gcu     ucuu  u
 ||||  ||||||   |||  | |||| |   |||||    | ||||||    ||| |||     ||||   
 gguc  gucugg   cuc  g ugcu c   cgucg    u aagauu    ugc uga     agga  a
u    gg      ugu   gu -    - -ga     gaug a      caaa   -   ----a    ca 

>ptr-mir-1273 (-42.00)   [ptr-miR-1273:76-100]

ugagg       ----a      --gaa  ug   gg     gu       a  -  a 
     caggaaa     uugcuu     cc  ggu  uggag  ugcagug gc ca g
     |||||||     ||||||     ||  |||  |||||  ||||||| || ||  
     gUUCUUU     AACGAA     GG  ccg  accuc  acgucac cg gu a
----g       CUCAG      ACAGC  Gu   --     --       -  c  u 

>ptr-mir-1274b (-34.30)   [ptr-miR-1274b:15-31]

-        c   u     U UU G   -    c 
 cuucuuca uca gUCCC G  C GGC GCCA u
 |||||||| ||| ||||| |  | ||| ||||  
 gaagaagu agu caggg c  g cug cggu u
g        a   -     - uu g   u    g 

>ptr-mir-1275 (-26.43)   [ptr-miR-1275:18-34]

-       gagaaaggguG         -------   UGU    ug 
 ccucugu           UGGGGGAGA       GGC   Cuug  u
 |||||||           |||||||||       |||   ||||   
 ggagacg           accccuuuu       ccg   gaau  c
g       ---------ga         auucaaa   uau    gu 

>ptr-mir-1276 (-32.30)   [ptr-miR-1276:12-31]

-  -   gcu    -A   A  C U         ---- -   g 
 cc cca   aggU  AAG GC C GUGGAGACA    c cug a
 || |||   ||||  ||| || | |||||||||    | |||  
 gg ggu   uccg  uuc cg g caccucugu    g gac u
c  c   agu    gg   a  a u         acaa a   u 

>ptr-mir-1278 (-49.00)   [ptr-miR-1278:49-68]

---                            c   ga   c 
   uuugcucauagaugauaugcauaguacu cca  acu a
   |||||||||||||||||||||||||||| |||  ||| u
   aagcgagugUCUACUAUACGUGUCAUGA ggu  uga u
gau                            U   --   a 

>ptr-mir-1280 (-47.30)   [ptr-miR-1280:4-20]

---c         G U    CCC   cc        a   u cc  -  a 
    ugUCCCACC C GCCA   ucc  ucugccuc gug g  ag gc u
    ||||||||| | ||||   |||  |||||||| ||| |  || ||  
    acagggugg g cggu   agg  ggacggag cac c  uc cg c
gaca         - -    ---   uc        a   u ac  a  a 

>ptr-mir-1281 (-32.00)   [ptr-miR-1281:32-48]

--     cacc            gugu 
  ggggg    gggaggagguga    c
  |||||    ||||||||||||     
  cccCC    UCCUCCUCCGCU    u
uu     -CUC            guuc 

>ptr-mir-1282-1 (-38.90)   [ptr-miR-1282:9-28]

ccuucu   CG          UC       ----   g   g     cgag   c 
      ucU  UUUGCCUUUU  UGCUUcu    gcu cau aucuc    ucc u
      |||  ||||||||||  |||||||    ||| ||| |||||    |||  
      agg  aaacgggaga  auggagg    cgg gua uagag    ggg g
------   aa          cc       guca   g   g     --au   g 

>ptr-mir-128-2 (-39.20)   [ptr-miR-128:51-71]

- ug       a          aua      ac    g gag 
 g  caguggg aggggggccg   cacugu  gaga u   u
 |  ||||||| ||||||||||   ||||||  |||| |    
 u  gucaucc UUUCUCUGGC   GUGACA  CUcu g   a
c gu       c          CAA      --    g acg 

>ptr-mir-1282-2 (-32.20)   [ptr-miR-1282:9-28]

ccuucu   CG          UC       -gc   aug   -  -   ag   c 
      ucU  UUUGCCUUUU  UGCUUcu   ugc   auc uc cug  ucc u
      |||  ||||||||||  |||||||   |||   ||| || |||  |||  
      aga  aaacgggaga  auggagg   acg   ugg ag gau  ggg g
-----a   -a          cu       auc   gga   u  a   --   g 

>ptr-mir-1283 (-44.60)   [ptr-miR-1283:13-34]

---               AC     A           g  g c 
   ucaggcugugacUCU  AAAGG AAGCGCUUUCU uu u a
   |||||||||||||||  ||||| ||||||||||| || | g
   aguuuggcauuggga  uuucc uucgcgaaaga aa a a
aag               gu     c           g  g a 

>ptr-mir-1284 (-37.29)   [ptr-miR-1284:30-51]

--a   ug    ---au        uuaau      U        CCU        uuaaauu 
   uuu  auau     aagccagu     guuuUC AUACAGAC   GGCUUUUC       u
   |||  ||||     ||||||||     |||||| ||||||||   ||||||||        
   aaa  uaua     uuuggucg     caaagg uauguuug   ccgaaagg       u
cua   gu    cuuuc        ----u      u        uac        uuauaua 

>ptr-mir-1285 (-58.20)   [ptr-miR-1285:51-72]

-            a                    ug ucuc 
 uguagagauagg ucucacuuuguugcccaggc  g    a
 |||||||||||| ||||||||||||||||||||  |     
 acaucucuauUC AGAGUGAAACAACGGGUCUg  c    a
a            C                    gu cuca 

>ptr-mir-1286 (-32.30)   [ptr-miR-1286:47-67]

-ug   u ug   a    g    c   g  u     au 
   ucc c  ggg cuca cuug ucu gc gcugg  u
   ||| |  ||| |||| |||| ||| || |||||   
   agg g  UCC GAGU GAAC AGG CG cgauu  g
cag   u gu   C    A    C   A  U     aa 

>ptr-mir-1288 (-37.80)   [ptr-miR-1288:44-64]

     gu     ag         acu   ac     a 
agggu  ugguc  cagaucagg   gca  ucacc u
|||||  |||||  |||||||||   |||  ||||| a
uuccg  accAG  GUCUAGUCC   CGU  GGUgg g
     uc     AG         ---   CA     u 

>ptr-mir-1289-1 (-59.69)   [ptr-miR-1289:86-108]

-        uuu  gua       aaaacaaa   --ggu         c                 ---ag  a 
 uucucaau   ua   ggaauua        acu     aaaugcaga ucuuggauuccaccccc     ag a
 ||||||||   ||   |||||||        |||     ||||||||| |||||||||||||||||     || u
 aaggguua   au   ucuuagu        uga     UUUACGUCU AGGACCUGAGGUggggg     uc c
c        --c  -ag       gggaccca   aagaU         A                 ccaaa  c 

>ptr-mir-1289-2 (-33.80)   [ptr-miR-1289:70-92]

-ccac   cc   --u      g   c      a   c ug -     -a   a  g 
     ggu  uag   uaaaaa gca auuccu gac c  c cucag  acu cu a
     |||  |||   |||||| ||| |||||| ||| |  | |||||  ||| ||  
     ccg  guc   guUUUU CGU UAAGGA CUG G  g ggguc  uga ga a
cgccc   cu   ccc      A   C      C   A GU u     ac   -  c 

>ptr-mir-1290 (-22.10)   [ptr-miR-1290:53-71]

-       g gu   cac       gu      u      a 
 gagcguc u  uga   ucaaaaa  uucaga uuugga c
 ||||||| |  |||   |||||||  |||||| ||||||  
 cucguAG G  ACU   GGUUUUU  AGGUuu aggcuu a
a       G --   --A       --      u      u 

>ptr-mir-1291 (-35.10)   [ptr-miR-1291:13-36]

---gu   -au   -agU    -   A  GA           ug   
     aga   ucc    GGCC CUG CU  AGACCAGCAGU  ua 
     |||   |||    |||| ||| ||  |||||||||||  | c
     ucu   agg    ccgg gac ga  uuugguugucg  gu 
guccu   guc   aaau    a   -  ac           gu   

>ptr-mir-129-1 (-29.00)   [ptr-miR-129:4-24]

-   -       C   CU      G   uu cu  c 
 gau CUUUUUG GGU  GGGCUU Cug  c  cu a
 ||| ||||||| |||  |||||| |||  |  ||  
 cua gaaaaac cca  cccgaa gac  g  ga a
u   u       c   uu      g   -u au  c 

>ptr-mir-129-2 (-48.80)   [ptr-miR-129:14-34]

-             -       C   CU      ---     acau 
 gcccuucgcgaau CUUUUUG GGU  GGGCUU   GCugu    a
 ||||||||||||| ||||||| |||  ||||||   |||||     
 cgggaggcguuua gaaaaac cca  cccgaa   cgaua    a
g             c       c   uu      ggc     acuc 

>ptr-mir-1292 (-32.60)   [ptr-miR-1292:2-26]

cUG        UU    CA A   U   -   g 
   GGAACGGG  CCGG  G CGC Gag guu c
   ||||||||  ||||  | ||| ||| ||| g
   ccuugccc  ggcc  c gcg cuc cag u
gga        uc    -c -   -   g   u 

>ptr-mir-1293 (-40.20)   [ptr-miR-1293:8-29]

guuguu             -            cu 
      cUGGGUGGUCUGG AGAUUUGUGCag  u
      ||||||||||||| ||||||||||||  g
      gauucaccaggcc ucuaaacacguc  u
auuucu             c            ca 

>ptr-mir-1294 (-62.70)   [ptr-miR-1294:47-68]

acuuaaug  ug  ---aa     gu   u  a g       c c                        C  g  u 
        ug  cc     gaucu  uca uu u aucucac g guccUGUGAGGUUGGCAUUGUUGU Ug ca u
        ||  ||     |||||  ||| || | ||||||| | |||||||||||||||||||||||| || || g
        au  gg     uuagg  agu aa a uggagug c cagggcacuccaaccgugacaaca au gu u
--------  gu  aagga     --   c  - g       a u                        u  a  c 

>ptr-mir-1295 (-50.50)   [ptr-miR-1295:49-69]

-                   c        u   g aau 
 aggacauuuuacccagauc guggccua uca a   g
 ||||||||||||||||||| |||||||| ||| |   u
 uccuguaaAGUGGGUCUAG CGCCGGAU agu u   g
c                   A        U   g ccc 

>ptr-mir-1296 (-50.20)   [ptr-miR-1296:16-37]

--a       aacu         C CU        CU   u     a 
   ccuaccu    gggUUAGGG C  GGCUCCAU  CCu uagga a
   |||||||    ||||||||| |  ||||||||  ||| ||||| a
   gggugga    cccaauccc g  ucggggug  ggg gucuu c
guc       ----         a cu        ag   u     c 

>ptr-mir-1297-1 (-19.10)   [ptr-miR-1297:52-68]

uguuua  u   g g    uc    a         aucu 
      uc cua g uuga  uauu gaauuacuu    g
      || ||| | ||||  |||| |||||||||     
      ag gau U GACU  AUGA CUUaaugaa    a
----aa  u   G G    UA    A         accg 

>ptr-mir-1297-2 (-17.30)   [ptr-miR-1297:51-67]

guuua  u   g ag   uc    a         aucu 
     uc cua g  uga  uauu gaauuacuu    g
     || ||| |  |||  |||| |||||||||     
     ag gau U  ACU  AUGA CUUaaugaa    a
--caa  u   G GG   UA    A         accg 

>ptr-mir-1298 (-48.10)   [ptr-miR-1298:17-38]

-----gac       u         U    C             ------       ccc 
        gaggagu aagagUUCA UCGG UGUCCAGAUGUAu      ccaagua   u
        ||||||| ||||||||| |||| |||||||||||||      |||||||    
        cuuuuca uuuucaagu aguc acgggucuacaua      gguuuau   g
acucagua       c         c    a             aauaac       ugu 

>ptr-mir-1299 (-23.82)   [ptr-miR-1299:62-82]

-    gug    u     c   uc  a -   a   acaau 
 ccuc   gcag guucu gaa  cu c aug ggg     c
 ||||   |||| ||||| |||  || | ||| |||     a
 GGAG   UGUC UAAGG CUU  ga g ugc ccc     u
G    -UG    U     U   gu  c a   a   agacu 

>ptr-mir-1302-1 (-44.60)   [ptr-miR-1302:75-95]

-   aaag  c     a            ag   a   u        gug  -      a  a     uac 
 cag    cc aguua auuugaauuuca  uaa caa gaauaauu   ua uguaag au uccca   a
 |||    || ||||| ||||||||||||  ||| ||| ||||||||   || |||||| || |||||   a
 guc    gg ucaau uaaacuuaaagu  auu guu cuuauuaa   AU GUAUUC UA AGGGU   u
u   cuua  a     g            cu   c   c        -AA  C      A  C     Uua 

>ptr-mir-1302-2 (-59.00)   [ptr-miR-1302:73-93]

-      ccag       -    uc            g      --uucg        a              
 ggaugc    uuaguuu gaau  uagauaaacaac aauaau      uagcauaa uaugucccaagcu 
 ||||||    ||||||| ||||  |||||||||||| ||||||      |||||||| |||||||||||| u
 uuuacg    aauuaaa cuua  gucuauuuguug uuauua      AUCGUAUU AUACAGGGUUuga 
u      ----       a    ga            g      caaaAA        C              

>ptr-mir-1302-3 (-61.50)   [ptr-miR-1302:72-92]

---     ccag       -                  g      --uucg        a              
   gaugc    uuaguuu gaauuuuagauaaacaac aauaau      uagcauaa uaugucccaagcu 
   |||||    ||||||| |||||||||||||||||| ||||||      |||||||| |||||||||||| u
   uuacg    aauuaaa cuuagagucuauuuguug uuauua      AUCGUAUU AUACAGGGUUuga 
auu     ----       a                  g      caaaAA        C              

>ptr-mir-1302-4 (-62.00)   [ptr-miR-1302:73-93]

-      ccag       -                  g      --uucg        a              
 ggaugc    uuaguuu gaauuuuagauaaacaac aauaau      uagcauaa uaugucccaagcu 
 ||||||    ||||||| |||||||||||||||||| ||||||      |||||||| |||||||||||| u
 uuuacg    aauuaaa cuuagagucuauuuguug uuauua      AUCGUAUU AUACAGGGUUuga 
u      ----       a                  g      caaaAA        C              

>ptr-mir-1302-5 (-62.20)   [ptr-miR-1302:73-93]

-      ccag     -                    g      --  c         a              
 ggaugc    uuagu uugaauuuuagauaaacaac aauaau  uu uuagcauaa uaugucccaagcu 
 ||||||    ||||| |||||||||||||||||||| ||||||  || ||||||||| |||||||||||| u
 uuuacg    aauua gacuuagagucuauuuguug uuauua  aa AAUCGUAUU AUACAGGGUUuga 
u      ----     a                    g      ca  A         C              

>ptr-mir-1302-6 (-20.90)   [ptr-miR-1302:56-76]

-        a   gg  a    u     g    cac      uag 
 aacaaaua uuu  ua uaua guaug ccca   aauauu   g
 |||||||| |||  || |||| ||||| ||||   ||||||   a
 uuguuuau aaa  AU GUAU CAUAC GGGU   Uuauaa   c
g        g   AA  C    U     A    ---      caa 

>ptr-mir-1302-7 (-20.20)   [ptr-miR-1302:39-59]

ac     ----g         cau        g ugc 
  aacau     uuuuuagua   guaugucu g   a
  |||||     |||||||||   |||||||| |   a
  uugug     aaAAAUCGU   CAUACAGG U   u
--     auuaa         AUU        G Uaa 

>ptr-mir-1302-8 (-44.50)   [ptr-miR-1302:66-86]

-        a   u        u  a       --       -c     u     a  a  ugc 
 cccauuua acu gaauuuca au aacaccg  uaauuuu  agcau agugu uc ca   a
 |||||||| ||| |||||||| || |||||||  |||||||  ||||| ||||| || ||   g
 ggguagau uga cuuaaagu ua uuguggu  auuaaaA  UCGUA UCAUA AG GU   u
c        g   c        c  g       gg       AA     U     C  G  Uua 

>ptr-mir-1303 (-42.40)   [ptr-miR-1303:50-71]

---   g       u           aa     c    uuuu 
   gcu ggcaaca agcgagaccuc  cucua aauu    u
   ||| ||||||| |||||||||||  ||||| ||||    u
   cgg ccguugU UCGUUCUGGGG  GAGAU Uuaa    u
uuu   a       C           CA     U    uuuu 

>ptr-mir-1306 (-33.60)   [ptr-miR-1306:54-71]

-u ag a    -c       uccccu  a        gugg   a 
  g  c gucu  caccacc      gc aacgucca    ugc g
  |  | ||||  |||||||      || ||||||||    |||  
  c  g cagg  GUGGUGG      CG UUGCAggu    aug a
ag cu a    ua       ---UCU  G        ---a   g 

>ptr-mir-1307 (-57.30)   [ptr-miR-1307:80-101]

-     ag  -cc       ---  -ac   --c        c a   u       -a  u  a   gc   uc  ug 
 cauca  ac   agcugag   uc   ugu   acugccua c auc cgaccgg  cc cg ccg  ucg  ug  u
 |||||  ||   |||||||   ||   |||   |||||||| | ||| |||||||  || || |||  |||  ||   
 guggu  ug   ucgacuu   ag   acg   uggcggau g ugG GCUGGCU  GG GC GGC  Agc  ac  u
a     cu  uuc       uua  cau   uac        a a   U       GC  U  -   UC   ua  cg 

>ptr-mir-130a (-42.40)   [ptr-miR-130a:54-75]

-     -       a        c      ug  a   ucu  a 
 gcugc uggccag gcucuuuu acauug  cu cug   gc c
 ||||| ||||||| |||||||| ||||||  || |||   ||  
 ugaug gccgguU CGGGAAAA UGUAAC  GA gau   ug c
g     u       A        U      GU  C   cac  u 

>ptr-mir-130b (-34.30)   [ptr-miR-130b:50-71]

-     c    ca       cc         a  auggg  g 
 gccug ccga  cucuuuc  uguugcacu cu     cc c
 ||||| ||||  |||||||  ||||||||| ||     ||  
 uggac ggcU  GGGAAAG  GUAACGUGA ga     gg u
c     u    AC       UA         C  ----a  g 

>ptr-mir-1322 (-11.30)   [ptr-miR-1322:51-69]

-       u ---a    gaa  -  a     uacau 
 aguauca g    auua   ac cu cuuau     a
 ||||||| |    ||||   || || |||||      
 UCGUAGU C    UAGU   ug ga gaaua     g
G       - GUCG    -AG  c  a     cauuu 

>ptr-mir-1323 (-37.60)   [ptr-miR-1323:10-31]

c   g             A  G         gugg 
 uga guccUCAAAACUG GG GCAUUUUCU    u
 ||| ||||||||||||| || |||||||||    u
 acu uagggguuuugac cc cgugaaagg    u
a   g             -  a         aaag 

>ptr-mir-1324-1 (-32.50)   [ptr-miR-1324:61-84]

----   ga  --        -   gc   -gucc     ucacu     c 
    ccu  ag  aggugcau gaa  cug     ugccc     gggaa c
    |||  ||  |||||||| |||  |||     |||||     ||||| c
    gga  uc  UUCACGUA CUU  GAC     auggg     cccuu c
ccuc   gg  CU        U   AA   AGACC     --ucu     c 

>ptr-mir-1324-2 (-32.50)   [ptr-miR-1324:61-84]

----   ga  --        -   gc   -gucc     ucacu     c 
    ccu  ag  aggugcau gaa  cug     ugccc     gggaa c
    |||  ||  |||||||| |||  |||     |||||     ||||| c
    gga  uc  UUCACGUA CUU  GAC     auggg     cccuu c
ccuc   gg  CU        U   AA   AGACC     --ucu     c 

>ptr-mir-133a-2 (-47.50)   [ptr-miR-133a:58-79]

-  a    --     uuu    g       aa  u  a        g cug 
 gg gcca  aaugc   gcua agcuggu  aa gg accaaauc a   u
 || ||||  |||||   |||| |||||||  || || |||||||| |    
 cc cggu  uuacg   cgau UCGACCA  UU CC UGGUUUag u   c
g  g    ag     ugu    G       AC  C  C        g aac 

>ptr-mir-133b (-48.10)   [ptr-miR-133b:65-86]

-   a  a  --aa --a    --       c        ca  c  a      u  g      
 cuc ga ga    g   ugcc  cccugcu uggcuggu  aa gg accaag cc ucuuc 
 ||| || ||    |   ||||  ||||||| ||||||||  || || |||||| || |||| c
 gag uu cu    c   acgg  gggacga AUCGACCA  UU CC UGGUUU gg agagu 
a   g  c  gacc gua    uc       c        AC  C  C      -  -      

>ptr-mir-134 (-34.90)   [ptr-miR-134:7-28]

-     gU        U  -A   G    ---    g 
 agggu  GUGACUGG UG  CCA AGGG   Gcau c
 |||||  |||||||| ||  ||| ||||   |||| a
 uccca  cacugauc ac  ggu uccc   ugug c
c     ac        c  cg   g    acu    u 

>ptr-mir-135a-1 (-44.52)   [ptr-miR-135a:17-39]

agg         u u          UU            uucua 
   ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
   ||||||||| | ||||||||||  ||||||||||||     u
   ggggcggca g ggugccgagg  uagggauauacu     g
-ca         c c          -u            cacuc 

>ptr-mir-135b (-47.20)   [ptr-miR-135b:16-38]

------ca    -                   CAU          --   cu 
        cucu gcuguggccUAUGGCUUUU   UCCUAUGUGA  uug  g
        |||| |||||||||||||||||||   ||||||||||  |||   
        ggga ugacaucggguaccgaaaa   gggauguacu  aac  u
cucgagcg    g                   -uc          ca   cc 

>ptr-mir-137 (-48.30)   [ptr-miR-137:59-81]

ggu  u   --           ug   g           ug a     -  g 
   cc cug  acucucuucgg  acg guauucuuggg  g uaaua cg a
   || |||  |||||||||||  ||| |||||||||||  | ||||| || u
   gg gac  ugagaggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
--c  c   ca           GA   G           GU -     u  a 

>ptr-mir-138 (-35.70)   [ptr-miR-138:9-31]

- u   u  AG             UCA     -ac   c  cg 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg ug  gaccacagcacuu   ucggc   uuc uc  a
a u   u  -g             -ua     cca   -  cu 

>ptr-mir-139 (-34.90)   [ptr-miR-139:44-65]

gug       -   u  a            g gg 
   uauucua cag gc cgugucuccagu u  c
   ||||||| ||| || |||||||||||| |  u
   aUGAGGU GUC CG GCGCAGAGGucg a  c
--a       U   C  -            g gg 

>ptr-mir-141-1 (-50.50)   [ptr-miR-141:58-79]

-    g    u   u       --    u        -   ugg  ua 
 ggcc gccc ggg ccaucuu  ccag acaguguu gga   uc  a
 |||| |||| ||| |||||||  |||| |||||||| |||   ||  u
 uugg uggg ccc GGUAGAA  GGUC UGUCACAA ccu   ag  u
c    g    c   c       AU    -        U   cga  ug 

>ptr-mir-141-2 (-50.50)   [ptr-miR-141:58-79]

-    g    u   u       --    u        -   ugg  ua 
 ggcc gccc ggg ccaucuu  ccag acaguguu gga   uc  a
 |||| |||| ||| |||||||  |||| |||||||| |||   ||  u
 uugg uggg ccc GGUAGAA  GGUC UGUCACAA ccu   ag  u
c    g    c   c       AU    -        U   cga  ug 

>ptr-mir-142 (-44.00)   [ptr-miR-142:52-74]

g        g   c           a         uaa ag a 
 acagugca uca ccauaaaguag aagcacuac   c  c c
 |||||||| ||| ||||||||||| |||||||||   |  |  
 ugucaugu agu GGUAUUUCAUC UUUGUGAUG   g  g u
-        g   A           C         -Ug ga g 

>ptr-mir-146a (-42.80)   [ptr-miR-146a:20-41]

-     -----u      u     uU            C        g  uc 
 cgaug      guaucc cagcu  GAGAACUGAAUU CAUGGGUU ug  a
 |||||      |||||| |||||  |||||||||||| |||||||| ||  g
 gcuac      uauagg gucga  uucuugacuuaa guguccag ac  u
u     ugucuc      -     -c            a        -  ug 

>ptr-mir-146b (-35.10)   [ptr-miR-146b:8-29]

- u      G        AU        CU  ga  u 
 c ggcacU AGAACUGA  UCCAUAGG  gu  gc c
 | |||||| ||||||||  ||||||||  ||  ||  
 g ccgugg ucuugacu  aggugucc  ua  cg u
g c      -        -c        cg  -a  a 

>ptr-mir-147b (-28.20)   [ptr-miR-147b:48-69]

---au    c   ug   a            aacuagauu      
     aaau uag  gaa cauuucugcaca         cugga 
     |||| |||  ||| ||||||||||||         |||| c
     uuua AUC  CUU GUAAAGGCGUGU         Gacca 
ggauu    c   GU   C            ---------      

>ptr-mir-148a (-25.70)   [ptr-miR-148a:44-65]

g             -  -a    cc    -   ag 
 aggcaaaguucug ag  cacu  gacu cug  u
 ||||||||||||| ||  ||||  |||| |||  a
 ucUGUUUCAAGAC UC  GUGA  CUga gau  u
-             A  AC    --    a   ag 

>ptr-mir-148b (-35.00)   [ptr-miR-148b:63-84]

caagcac  uu   a       ug         u  a    ca    gugg u 
       ga  agc uuugagg  aaguucugu au cacu  ggcu    c c
       ||  ||| |||||||  ||||||||| || ||||  ||||    | u
       cu  ucg aagcucU  UUCAAGACA UA GUGA  CUga    g c
------u  -u   a       GU         C  C    --    --aa u 

>ptr-mir-149 (-46.00)   [ptr-miR-149:14-36]

ccggc    g   U U G      G     A     g g   g 
     gccc agc C G CUCCGU UCUUC CUCCC u cuu u
     |||| ||| | | |||||| ||||| ||||| | |||  
     cggg ucg g c ggggca ggagg gaggg a gag c
-----    g   u u g      g     -     - g   c 

>ptr-mir-150 (-57.00)   [ptr-miR-150:16-37]

c      u  -            AC   U       U -   g 
 ucccca gg cccugUCUCCCA  CCU GUACCAG G cug g
 |||||| || ||||||||||||  ||| ||||||| | |||  
 aggggu cc gggacagggggu  gga caugguc c gac c
-      -  a            cc   -       c a   u 

>ptr-mir-151 (-46.20)   [ptr-miR-151:47-67]

--------------u      c            ca          u ucu 
               uuccug ccucgaggagcu  cagucuagua g   c
               |||||| ||||||||||||  |||||||||| |    
               agggac GGAGUUCCUCGA  GUCAGAUCau c   a
uccacucauacuggu      a            -A          c ccu 

>ptr-mir-152 (-48.50)   [ptr-miR-152:53-73]

-    cc  c              g  a    cc    cgg   c 
 gucc  cc ggcccaaguucugu au cacu  gacu   gcu u
 ||||  || |||||||||||||| || ||||  ||||   |||  
 cagg  gg ccgGGUUCAAGACA UA GUGA  CUga   cga g
c    aa  c              G  C    --    ---   g 

>ptr-mir-153 (-40.60)   [ptr-miR-153:53-74]

a     gg      -             gu       -a  aa 
 gcggu  ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuaC AGUGAAAACACUG  ACGUUga  cg  u
-     aa      U             AU       cc  ag 

>ptr-mir-155 (-28.40)   [ptr-miR-155:3-25]

-             C   A        -    c 
 ugUUAAUGCUAAU GUG UAGGGGUu uuug c
 ||||||||||||| ||| |||||||| ||||  
 acaauuacgauua uac auccucag aaac u
g             -   -        u    c 

>ptr-mir-16-2 (-29.80)   [ptr-miR-16:9-30]

u  -    cU         UA        C  ag   aau 
 uc cacu  AGCAGCACG  AAUAUUGG Gu  uga   a
 || ||||  |||||||||  |||||||| ||  |||    
 ag guga  ucgucgugu  uuauaacc ca  auu   u
c  u    uu         ca        a  -a   gua 

>ptr-mir-181b-2 (-34.70)   [ptr-miR-181b:15-37]

-uga   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUu ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     guaaguagc  uagucacucaa cu  g
acaa   a     caaac         --           -  aa 

>ptr-mir-181d (-69.60)   [ptr-miR-181d:35-57]

-     --      -      ----ca   ga       aucA         G UG          guga  a c 
 ucccc  uccccu aggcca      gcc  ggucaca    ACAUUCAUU U  UCGGUGGGUu    gg c g
 |||||  |||||| ||||||      |||  |||||||    ||||||||| |  ||||||||||    || |  
 agggg  agggga uucggu      cgg  ucggugu    uguaaguag g  ggccacccag    cc g a
c     ua      a      acagac   -g       -cac         g --          ---a  - g 

>ptr-mir-182 (-44.14)   [ptr-miR-182:23-46]

ga    -  --ug    c      uU       U -G      UCA      ugaggu 
  gcug cu    ccuc cuccgu  UUGGCAA G  UAGAAC   CACUgg      a
  |||| ||    |||| ||||||  ||||||| |  ||||||   ||||||       
  cggc ga    ggag ggggua  aaccguu c  aucuug   guggcc      a
-a    c  cuca    c      uc       - ag      ---      uaggac 

>ptr-mir-1825 (-26.80)   [ptr-miR-1825:35-52]

-    cu    ug    gc   ccu 
 gaga  gggg  cugg  ucc   a
 ||||  ||||  ||||  |||   g
 CUCU  UCCC  GACC  agg   a
C    CC    GU    Uc   auc 

>ptr-mir-1827 (-21.50)   [ptr-miR-1827:48-65]

-------cagca  -a       -   gcua    aau 
            gc  cagccuu cag    aggc   g
            ||  ||||||| |||    ||||    
            CG  GUcggaa guc    uccg   a
UAAGUUAGCUGA  GA       a   ----    aag 

>ptr-mir-185 (-52.90)   [ptr-miR-185:14-35]

-     c       UG   A     G         Au  uc 
 ggggg gagggau  GAG GAAAG CAGUUCCUG  gg  c
 ||||| |||||||  ||| ||||| |||||||||  ||   
 cccuc cuuccug  cuc cuuuc gucggggac  cc  c
a     c       gu   -     g         -c  uc 

>ptr-mir-18b (-17.60)   [ptr-miR-18b:6-28]

uguguUAA  U    C   U     UA  --g     
        GG GCAU UAG GCAGU  Gu   aagc 
        || |||| ||| |||||  ||   ||| a
        cc cgua auc cguca  ua   uucg 
-cggucua  c    a   c     uc  aga     

>ptr-mir-190b (-31.90)   [ptr-miR-190b:11-31]

u   u     -U               G     -   aa 
 gcu cugug  GAUAUGUUUGAUAUU GGUUg uuu  u
 ||| |||||  ||||||||||||||| ||||| |||   
 cga gacau  uuauacaaacuguaa ucaac aag  u
a   c     uc               a     c   ga 

>ptr-mir-191 (-47.80)   [ptr-miR-191:16-38]

c   u   c      CA         C  AA       uu  -  c 
 ggc gga agcggg  ACGGAAUCC AA  GCAGCUG  gu cu c
 ||| ||| ||||||  ||||||||| ||  |||||||  || ||  
 ccg ccu ucgucc  ugcuuuagg uu  cgucgac  ua ga a
-   u   c      cc         -  cg       cu  c  g 

>ptr-mir-192 (-39.49)   [ptr-miR-192:24-44]

gccgagacc   u  --   g g  C         -     A       ugcucuc 
         gag gc  aca g cu UGACCUAUG AAUUG CAGCCag       g
         ||| ||  ||| | || ||||||||| ||||| |||||||        
         cuc cg  ugu u ga acuggauac uuaac gucgguc       u
-gaccguaa   -  cu   a g  c         c     c       uccccuc 

>ptr-mir-193a (-49.70)   [ptr-miR-193a:55-76]

cgaggau   a             u     cg   g  a   gggu 
       ggg gcugagggcuggg cuuug  ggc ag uga    g
       ||| ||||||||||||| |||||  ||| || |||     
       ccc cggcucuUGACCC GAAAC  CCG UC Acu    u
------c   -             U     AU   G  A   aggc 

>ptr-mir-193b (-42.30)   [ptr-miR-193b:50-71]

-  gu       u    gu         g  a  ag uua 
 ug  cucagaa cggg  uuugagggc ag ug  u   u
 ||  ||||||| ||||  ||||||||| || ||  |   g
 ac  ggguuuU GCCC  AAACUCCCG UC Ac  a   u
u  ug       C    UG         G  A  cu uuu 

>ptr-mir-195 (-45.74)   [ptr-miR-195:15-35]

a   u     g  cU          -A          caggga 
 gcu cccug cu  AGCAGCACAG  AAUAUUGGCa      a
 ||| ||||| ||  ||||||||||  ||||||||||       
 ugg gggac ga  ucgucguguc  uuauaaccgu      g
-   u     g  cc          gg          cugagc 

>ptr-mir-196a-1 (-23.60)   [ptr-miR-196a:6-27]

-     UA   A    C         - Gc ugg 
 ugaau  GGU GUUU AUGUUGUUG G  c   g
 |||||  ||| |||| ||||||||| |  |   u
 acuua  cca caaa uacaacaac c  g   u
c     gc   c    u         a aa ucu 

>ptr-mir-196b (-34.30)   [ptr-miR-196b:15-36]

-     uc      uU       U  C           ucca 
 acugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
 |||||  ||||||  ||||||| || |||||||||||     
 ugacu  ucauua  uccguca ag acgacagcucu    c
u     --      cu       c  c           cuuu 

>ptr-mir-199a-1 (-26.00)   [ptr-miR-199a-3p:47-68]

g  aac       u        c   u  ---g     
 cc   ccagugu cagacuac ugu ca    gagg 
 ||   ||||||| |||||||| ||| ||    ||| c
 gg   GGUUACA GUCUGAUG ACA gu    cucu 
-  AUU       C        -   u  guaa     

>ptr-mir-199b (-42.90)   [ptr-miR-199b:65-86]

cca    -acacc    cu  -     c       u       u    u  ----  a 
   gagg      ucca  cc gucua ccagugu uagacua cugu ca    gg c
   ||||      ||||  || ||||| ||||||| ||||||| |||| ||    ||  
   cucc      gggu  gg cggAU GGUUACA GUCUGAU GACA gu    cc u
--g    cagauu    cg  u     U       C       -    u  uaaa  c 

>ptr-mir-200a (-47.20)   [ptr-miR-200a:53-74]

-    - c   g        -            -----------     a 
 cggg c ccu ugagcauc uuaccggacagu           gcugg u
 |||| | ||| |||||||| ||||||||||||           ||||| u
 gccc g gga acuUGUAG AAUGGUCUGUCA           cgacc u
c    a u   a        C            CAAUcucaguu     c 

>ptr-mir-202 (-56.30)   [ptr-miR-202:64-83]

cuccuca   cc     -       u           -a           g   au 
       gag  gcccg ccguucc uuuuccuaugc  uauacuucuuu agg  c
       |||  ||||| ||||||| |||||||||||  ||||||||||| |||   
       cuc  ugggc ggcgggg aaAAGGGUACG  AUAUGGAGAaa ucc  u
-cgaccc   -c     u       c           GG           -   gg 

>ptr-mir-203 (-53.20)   [ptr-miR-203:64-85]

-u    gg a u   g         c         u    g    a     - ug 
  guug  g c cgc cgcuggguc agugguucu aaca uuca caguu c  u
  ||||  | | ||| ||||||||| ||||||||| |||| |||| ||||| |   
  cgac  c g gcg gcggcucaG UCACCAGGA UUGU AAGU Guuaa g  a
ag    ag g c   g         A         U    A    -     c cg 

>ptr-mir-206 (-43.70)   [ptr-miR-206:52-73]

-    c                        cc     u g uu 
 gcuu ccgaggccacaugcuucuuuauau  ccaua g a  a
 |||| ||||||||||||||||||||||||  ||||| | |   
 ugaa ggcuuuGGUGUGUGAAGGAAUGUA  GGUau c u  c
g    c                        -A     - g uu 

>ptr-mir-208a (-30.90)   [ptr-miR-208a:44-65]

u   g           g  c  gg      c  a 
 gac ggcgagcuuuu gc cg  uuauac ug u
 ||| ||||||||||| || ||  |||||| || g
 cug uUGUUCGAAAA CG GC  AAUAug ac c
-   g           A  A  AG      c  u 

>ptr-mir-208b (-31.30)   [ptr-miR-208b:46-67]

-c        g          c   aa        cu 
  cucucagg aagcuuuuug ucg  uuauguuu  g
  |||||||| |||||||||| |||  ||||||||  a
  gggagucU UUUGGAAAAC AGC  AAUAuaag  u
ac        G          A   AG        cc 

>ptr-mir-20b (-28.40)   [ptr-miR-20b:6-28]

a    -CA           G     -GU    uu 
 guac   AAGUGCUCAUA UGCAG   AGuu  g
 ||||   ||||||||||| |||||   ||||  g
 caug   uucacggguau auguc   ucag  c
-    acc           g     auc    ua 

>ptr-mir-210 (-54.40)   [ptr-miR-210:66-87]

acccg  a  cc u          gg     c   cc   -      c  c -     
     gc gu  c ccaggcgcag  cagcc cug  cac cgcaca ug g cugc 
     || ||  | ||||||||||  ||||| |||  ||| |||||| || | ||| c
     cg cg  g gguccguguc  GUCGG GAC  GUG GCGUGU ac c gacc 
-ccag  -  ac -          uA     C   -A   U      C  c a     

>ptr-mir-211 (-45.70)   [ptr-miR-211:26-47]

--ucac   -gccau     uug     U         CA     C    agg  u 
      cug      gugac   ugggc UCCCUUUGU  UCCUU GCCU   gc c
      |||      |||||   ||||| |||||||||  ||||| ||||   || u
      gac      cacug   acucg ggggaaacg  aggga cggg   cg g
aggcac   acccuu     uug     u         ac     -    --a  a 

>ptr-mir-216b (-32.50)   [ptr-miR-216b:11-32]

-g       gaA         A  --CAAA      g  ac 
  cagacug   AAUCUCUGC GG      UGUGAu uc  u
  |||||||   ||||||||| ||      |||||| ||   
  gucugac   uuagagaug cc      acacua ag  g
ca       auc         c  auucac      a  ga 

>ptr-mir-217 (-33.40)   [ptr-miR-217:35-57]

aguauaauuauuacaua    uu     c c  a  C     C          U -   aag 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAu   a
                 ||||  ||||| | || || ||||| |||||||||| | |||    
                 caaa  cuacg c uc gu acgua uccuugacua c cug   a
---------------aa    -u     a u  c  u     a          c a   acu 

>ptr-mir-219-1 (-49.70)   [ptr-miR-219-5p:20-40] [ptr-miR-219-1-3p:61-82]

-   c --------c    c       cU   U     A  G        g    uau 
 cgc c         gggc gcggcuc  GAU GUCCA AC CAAUUCUc aguc   g
 ||| |         |||| |||||||  ||| ||||| || |||||||| ||||   g
 gcg g         cccg cgccgaG  CUG CAGGU UG GUUGAGAg ucgg   c
g   a cuccaaacc    c       CC   -     C  A        -    ccu 

>ptr-mir-219-2 (-49.10)   [ptr-miR-219-5p:19-39] [ptr-miR-219-2-3p:62-83]

acuca       c     U   U     AA           uac a  c 
     ggggcuu gccac GAU GUCCA  CGCAAUUCUug   g gu u
     ||||||| ||||| ||| |||||  |||||||||||   | || g
     ccucgag cggUG CUA CAGGU  GUGUUAAGAgc   c cg c
---gg       u     U   -     CG           caa -  g 

>ptr-mir-220b (-37.80)   [ptr-miR-220b:10-30]

-u  -   - c   ACC        -   -      g    a    
  gu agg g uCC   ACCGUGUC UGA CACUUu ggcg ggg 
  || ||| | |||   |||||||| ||| |||||| |||| || u
  cg ucc c agg   uggcguag acu guggaa ucgc cca 
gg  c   u a   guc        u   u      g    a    

>ptr-mir-221 (-47.20)   [ptr-miR-221:65-87]

u     ----       cugg   a    -  ug   u         auuu    -   c 
 gaaca    uccaggu    ggc ugaa cc  gca acaauguag    cugu guu g
 |||||    |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
 cuugu    aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
u     acaa       ----   g    U  GU   C         ----    a   a 

>ptr-mir-24-1 (-24.52)   [ptr-miR-24:43-64]

-   g  g   a         ua     ucuca 
 ucc gu ccu cugagcuga  ucagu     u
 ||| || ||| |||||||||  |||||     u
 agG CA GGA GACUUGACU  GGUca     u
g   A  A   C         -C     cacau 

>ptr-mir-26a-2 (-41.84)   [ptr-miR-26a:13-34]

-     gg ug  UU         C          guuucc 
 gcugu  c  ga  CAAGUAAUC AGGAUAGGCU      a
 |||||  |  ||  ||||||||| ||||||||||       
 cgacg  g  cu  guucauuag ucuuauccgg      u
u     ga gu  uu         u          aguguc 

>ptr-mir-26b (-38.10)   [ptr-miR-26b:11-31]

-   ga   -   U        UC           u ug 
 cgg  ccc agU CAAGUAAU  AGGAUAGGUug g  c
 |||  ||| ||| ||||||||  ||||||||||| |   
 gcc  ggg ucg guucauua  ucuuguccgac c  u
g   ag   c   -        cc           - ug 

>ptr-mir-27b (-48.60)   [ptr-miR-27b:60-80]

--   -    aaca                  auug        ugau     
  ccu cucu    aggugcagagcuuagcug    gugaacag    uggu 
  ||| ||||    ||||||||||||||||||    ||||||||    ||| u
  gga gaga    uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
gu   a    --ag                  --GA        --uc     

>ptr-mir-296 (-44.10)   [ptr-miR-296:48-69]

a ga      c        c  c         g   ugc 
 g  cccuuc ggagggcc cc cucaauccu uug   c
 |  |||||| |||||||| || ||||||||| |||   u
 c  gggaag CCUCUCGG GG GGGUUGGGA Gac   a
- uc      u        A  U         -   uua 

>ptr-mir-297 (-25.00)   [ptr-miR-297:4-24]

ugu       U       UGC           u 
   AUGUAUG GUGCAUG   AUGuaugugug a
   ||||||| |||||||   |||||||||||  
   uauauac cauguau   uguauacauac u
--c       u       -ua           a 

>ptr-mir-298 (-32.10)   [ptr-miR-298:11-34]

--   gg    c      --      GA     UC -    g uu 
  uca  ucuu AGCAGA  AGCAGG  GGUUC  C CAgu g  u
  |||  |||| ||||||  ||||||  |||||  | |||| |  u
  agu  agga ucguuu  ucgucc  ucaag  g guca u  c
cg   -g    c      cg      ga     ga u    g uc 

>ptr-mir-29c (-34.70)   [ptr-miR-29c:54-75]

au        -  ggc           ucc       ---     u 
  cucuuaca ca   ugaccgauuuc   ugguguu   cagag c
  |||||||| ||   |||||||||||   |||||||   ||||| u
  ggggaugu gu   AUUGGCUAAAG   ACCACGA   guuuu g
-g        a  ---           UUU       Ucu     u 

>ptr-mir-300 (-23.10)   [ptr-miR-300:51-72]

---   a   ga      guaa     ---caug    u  uu 
   gcu cuu  agagag    uccuu       cauu gc  u
   ||| |||  ||||||    |||||       |||| ||  a
   cga ggg  UCUCUC    GGGAA       guaa cg  c
aaa   g   UC      AGAC     CAUAUua    -  uu 

>ptr-mir-301a (-31.50)   [ptr-miR-301a:51-73]

a     aa  a     c    ---u          ----a       
 cugcu  cg augcu ugac    uuauugcacu     cuguac 
 |||||  || ||||| ||||    ||||||||||     ||||| u
 gacga  gu uaCGA ACUG    GAUAACGUGA     gacauu 
-     aa  c     A    UUAU          Cgauc       

>ptr-mir-301b (-32.80)   [ptr-miR-301b:44-66]

----  g        c      ---g        a  gug u 
    cc caggugcu ugacga    guugcacu cu   c c
    || |||||||| ||||||    |||||||| ||   | u
    gg gucuaCGA ACUGUU    UAACGUGA ga   g g
acca  -        A      AUAG        C  --a a 

>ptr-mir-302a (-31.30)   [ptr-miR-302a:44-66]

--c     cuu         u           gaa 
   cacca   aaacgugga guacuugcuuu   a
   |||||   ||||||||| |||||||||||   c
   GUGGU   UUUGUACCU CGUGAAUgaag   u
guA     ---         U           aaa 

>ptr-mir-302b (-28.10)   [ptr-miR-302b:47-69]

gcucc    a   uu          ug   u  guga 
     cuuc acu  aacauggaag  cuu cu    c
     |||| |||  ||||||||||  ||| ||    u
     gagG UGA  UUGUACCUUC  GAA ga    u
-----    A   UU          GU   U  aaau 

>ptr-mir-302c (-29.00)   [ptr-miR-302c:43-65]

c   ug  uu             c    -g  u 
 cuu  cu  aacauggggguac ugcu  ug g
 |||  ||  ||||||||||||| ||||  || a
 gaG  GA  UUGUACCUUCGUG AUga  ac a
-   GU  CU             A    aa  a 

>ptr-mir-302d (-28.50)   [ptr-miR-302d:44-66]

ccuc     u                ---c   ga 
    uacuu aacauggaggcacuug    ugu  c
    ||||| ||||||||||||||||    |||   
    GUGAG UUGUACCUUCGUGAAU    aca  a
--gU     U                aaaa   gu 

>ptr-mir-302e (-20.70)   [ptr-miR-302e:5-21]

-----u     A     ---------     G  --     uu 
      gggUA GUGCU         UCCAU CU  Ucagu  c
      ||||| |||||         ||||| ||  |||||   
      uccau cacga         aggua ga  gguca  c
agauau     c     uaaugaugu     -  au     uu 

>ptr-mir-302f (-10.00)   [ptr-miR-302f:26-42]

--cua       ---cu       uu 
     uguaaac     ggcaauu  c
     |||||||     |||||||  g
     auaUUUG     UCGUUAA  c
agaaa       UACCU       Uu 

>ptr-mir-30c-1 (-34.90)   [ptr-miR-30c:16-38]

-     cu    ugu U       U   ACA         ---g  a 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    ug g
 |||||  ||||   | ||||||| |||   |||||||||    ||  
 gguac  cguc   c cauuugu ggg   gagggucgg    ac c
a     --    uuc u       u   --a         ugga  u 

>ptr-mir-30e (-53.00)   [ptr-miR-30e:16-37]

-        uu  ua            UU           g aag u 
 ggcagucu  gc  cUGUAAACAUCC  GACUGGAAGcu u   g g
 ||||||||  ||  ||||||||||||  ||||||||||| |   |  
 ccgucgga  cg  gacauuuguagg  cugacuuucga g   c u
a        --  gc            --           g aga u 

>ptr-mir-320a (-46.20)   [ptr-miR-320a:48-69]

g     c    -cuc         uu       c      g 
 cuucg uccu    cgccuucuc  cccgguu uucccg a
 ||||| ||||    |||||||||  ||||||| ||||||  
 ggagu agga    GCGGGAGAG  GGGUCGA AAgggc g
-     -    aaaA         UU       A      u 

>ptr-mir-320b-1 (-15.70)   [ptr-miR-320b:39-60]

--------------------------------aauuaauc    ucu      uu 
                                        ccuc   uucuag  c
                                        ||||   ||||||   
                                        ggag   gagauc  u
uaauuaaucaauuaaacaAACGGGAGAGUUGGGUCGAAAA    --u      cu 

>ptr-mir-320b-2 (-45.46)   [ptr-miR-320b:72-93]

- g      ---uu    uucuaccua        ------g  u   ag        uu     -a       a 
 u uuauuu     uguc         agaauucu       uc cuu  gcuuucuc  cccag  uuuccca a
 | ||||||     ||||         ||||||||       || |||  ||||||||  |||||  |||||||  
 g gauaga     acag         ucuuaaga       ag gaa  CGGGAGAG  GGGUC  AAAgggu g
a g      uuaau    ---ucucug        aaaaaaa  -   AA        UU     GA       u 

>ptr-mir-320c-1 (-34.47)   [ptr-miR-320c:49-68]

-        --aaaaugag        uu       c    cag 
 uugcauua          gccuucuc  cccaguu uucc   a
 ||||||||          ||||||||  ||||||| ||||    
 gauguagu          UGGGAGAG  GGGUCGA AAgg   g
g        aaaaaaaaga        UU       A    acu 

>ptr-mir-320c-2 (-24.40)   [ptr-miR-320c:30-49]

---     uu       c     ag 
   uucuc  uccaguu uuccc  a
   |||||  ||||||| |||||   
   GAGAG  GGGUCGA AAggg  a
UGG     UU       A     uu 

>ptr-mir-320d-1 (-20.10)   [ptr-miR-320d:30-47]

-      u       c   c  a 
 uucucg cccaguu uuc ca a
 |||||| ||||||| ||| ||  
 GAGAGU GGGUCGA AAg gu g
G      U       A   a  u 

>ptr-mir-320d-2 (-18.20)   [ptr-miR-320d:29-46]

---    uu  ug   c    c a 
   ucuc  cc  guu uucc g a
   ||||  ||  ||| |||| |  
   AGAG  GG  CGA AAgg c g
aGG    UU  GU   A    a u 

>ptr-mir-320d-3 (-23.10)   [ptr-miR-320d:30-47]

-     uu       c      g 
 uucuc  cccaguu uucuug a
 |||||  ||||||| ||||||  
 GAGAG  GGGUCGA AAggac g
G     UU       A      u 

>ptr-mir-323 (-37.70)   [ptr-miR-323:50-70]

----u      u g        g u     gcgc  u    uua 
     gguacu g agagaggu g ccgug    gu cgcu   u
     |||||| | |||||||| | |||||    || ||||    
     cuauga c uuUCUCCA C GGCAC    CA gcgg   u
cuaau      - g        G U     AUUA  C    uau 

>ptr-mir-324 (-36.10)   [ptr-miR-324:53-72]

cug     gc     c   u c   a     u   u  aaag 
   acuau  cuccc gca c ccu gggca ugg gu    c
   |||||  ||||| ||| | ||| ||||| ||| ||     
   ugaug  gggGG CGU G GGA CCCGU Acc ca    u
---     uu     U   C U   C     C   -  gagg 

>ptr-mir-326 (-55.80)   [ptr-miR-326:60-79]

cuc        guu          c       uugu  a     -g  g 
   aucugucu   gggcuggagg agggccu    ga ggcgg  ug u
   ||||||||   |||||||||| |||||||    || |||||  || g
   uaggcgga   cccGACCUCC UCCCGGG    CU CCgcu  ac c
-cu        -gc          U       ---U  -     ag  u 

>ptr-mir-328 (-46.30)   [ptr-miR-328:48-69]

-u  ag           ga     u     a aaa  g 
  gg  ugggggggcag  ggggc caggg g   gu c
  ||  |||||||||||  ||||| ||||| |   ||  
  cc  GCCUUCCCGUC  UCCCG GUCcc c   ca a
uc  cU           UC     -     - -ga  u 

>ptr-mir-329-1 (-30.70)   [ptr-miR-329:49-70]

-    cu           uu ug   uuc      u  aa 
 guac  gaagagagguu  c  ggu   uguuuc uu  u
 ||||  |||||||||||  |  |||   |||||| ||   
 uaug  cuUUUCUCCAA  G  CCA   ACAAag ag  g
c    ac           UU GU   --C      c  ga 

>ptr-mir-329-2 (-30.70)   [ptr-miR-329:49-70]

-    cu           uu ug   uuc      u  au 
 guac  gaagagagguu  c  ggu   uguuuc uu  u
 ||||  |||||||||||  |  |||   |||||| ||   
 uaug  cuUUUCUCCAA  G  CCA   ACAAag ag  g
c    ac           UU GU   --C      u  ga 

>ptr-mir-330 (-45.72)   [ptr-miR-330:57-79]

cuuu   -  u a           --    -    u   ag    ugcaa 
    ggc ga c cugccucucug  ggcc ugug cuu  gcuc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ccg cu g gacggAGAGAC  CCGG ACAC GAA  CGag     u
----   u  c c           GU    C    -   -A    ccaac 

>ptr-mir-331 (-43.52)   [ptr-miR-331:60-80]

aguuugguuuu         u        u    u       au ccaga 
           guuuggguu guucuagg augg cccaggg  c     u
           ||||||||| |||||||| |||| |||||||  |     c
           cgaauccaa cAAGAUCC UAUC GGGUCCC  g     a
---------cu         c        -    C       CG accaa 

>ptr-mir-335 (-41.50)   [ptr-miR-335:15-37]

--------  -uu    c        A         C        U  gu 
        gu   ugag gggggUCA GAGCAAUAA GAAAAAUG uu  c
        ||   |||| |||||||| ||||||||| |||||||| ||   
        cg   acuc ccuccagu cucguuauu cuuuuugc aa  a
acuuauau  uuu    u        c         a        c  au 

>ptr-mir-337 (-40.30)   [ptr-miR-337:60-81]

uagucagua uu         -   c   u     c        -   ca 
         g  ggggggugg gaa ggc ucaua aggaguug aug  c
         |  ||||||||| ||| ||| ||||| |||||||| |||   
         c  uccccuaCU CUU CCG AGUAU UCCUCgac uau  a
-------aa -u         U   U   U     A        c   ug 

>ptr-mir-338 (-24.72)   [ptr-miR-338:42-63]

ucuc      u   -         -   gauga 
    caacaa auc cuggugcug agu     c
    |||||| ||| ||||||||| |||     u
    GUUGUU UAG GACUACGAC Uca     c
-gaa      U   U         C   gcgga 

>ptr-mir-339 (-48.70)   [ptr-miR-339:50-71]

---------c       c    cu c     c  c   a       u  g 
          ggggcgg cgcu  c cuguc uc agg gcucacg gu c
          ||||||| ||||  | ||||| || ||| ||||||| ||  
          ccccguc gcga  G GACAG AG UCC CGAGUgu cg c
gcgucuguga       c    CC A     C  C   G       c  u 

>ptr-mir-33b (-58.30)   [ptr-miR-33b:15-34]

---------c    -   c   c  -          UU         g   g 
          gggc ggc ccg gG UGCAUUGCUG  GCAUUGCac ugu u
          |||| ||| ||| || ||||||||||  ||||||||| ||| g
          cccg ccg ggc cc acgugacggc  cgugacgug gcg a
caccacgguc    g   a   -  g          uc         g   g 

>ptr-mir-340 (-36.00)   [ptr-miR-340:16-37]

-uu     u      aU       -CAA      U    g     ug 
   guacc ggugug  UAUAAAG    UGAGAC GAUU ucaua  u
   ||||| ||||||  |||||||    |||||| |||| |||||  c
   uaugg ccauac  auauuuc    acucug cuag ggugu  g
uuc     u      cg       auug      c    -     uu 

>ptr-mir-342 (-48.60)   [ptr-miR-342:60-82]

aaac     u        g      --ua      auuga      ugg u 
    ugggc caagguga gggugc    ucugug     gggaca   c a
    ||||| |||||||| ||||||    ||||||     ||||||   | a
    auccg guuccacU CCCACG    AGACAC     CUCUgu   g u
auuc     -        G      CUAA      ----A      uaa g 

>ptr-mir-345 (-51.30)   [ptr-miR-345:17-38]

----------cc       u      G U       A  C         ug u 
            caaaccc aggucu C GACUCCU GU CAGGGCUCg  a g
            ||||||| |||||| | ||||||| || |||||||||  |  
            guuuggg uccgga g cugggga ca gucccgggu  u g
cgacagcuauaa       -      g u       g  a         gg c 

>ptr-mir-346 (-50.20)   [ptr-miR-346:20-42]

g u      g ug    u    CU    -  AUG        U  guug 
 g cucugu u  ggcg cUGU  GCCC GC   CCUGCCUC cu    c
 | |||||| |  |||| ||||  |||| ||   |||||||| ||     
 c gagacg g  ccgu gacg  cggg cg   ggacggag ga    u
g -      - gu    c    uc    u  --g        -  aguc 

>ptr-mir-34b (-31.60)   [ptr-miR-34b:49-70]

-    cg    -gua       uca    c        -  g 
 ugcu  guuu    ggcagug   uuag ugauugua cu u
 ||||  ||||    |||||||   |||| |||||||| || g
 acgg  caaa    CCGUCAC   AAUC ACUAACau gg g
c    aa    acUA       CUC    -        u  u 

>ptr-mir-34c (-29.50)   [ptr-miR-34c:45-66]

-    ag     a   a    a     c      c  a 
 gucu  uuacu ggc gugu guuag ugauug ua u
 ||||  ||||| ||| |||| ||||| |||||| ||  
 uaga  aauGG CCG CACA CAAUC ACUAAc au a
u    aa     A   G    C     -      c  g 

>ptr-mir-361 (-30.70)   [ptr-miR-361:45-67]

g    uu         --u  a    u     auaa 
 gagc  aucagaauc   cc gggg acuuu    u
 ||||  |||||||||   || |||| |||||     
 uucg  UAGUCUUAG   GG CCCC Ugaaa    u
-    UU         UGU  A    C     aacu 

>ptr-mir-362 (-31.60)   [ptr-miR-362:41-62]

-             acc        -a ug  a 
 uugaauccuugga   uaggugug  g  cu u
 |||||||||||||   ||||||||  |  || u
 aACUUAGGAACUU   AUCCACAC  c  ga u
a             ---        AA gu  c 

>ptr-mir-365-1 (-35.40)   [ptr-miR-365:55-76]

cc      aa        ac           ----   -   uuu 
  gcaggg  aaugaggg  uuuugggggca    gau gug   c
  ||||||  ||||||||  |||||||||||    ||| |||   c
  cguucu  uUAUUCCU  AAAAUCCCCGU    cua cac   a
-a      cg        -A           AAUa   u   cuu 

>ptr-mir-365-2 (-35.60)   [ptr-miR-365:68-89]

-a  g   u  aggaua       a        ac   cu      -----    u   u 
  ga ugu ca      gcaagaa aaugaggg  uuu  ggggca     gcug guu u
  || ||| ||      ||||||| ||||||||  |||  ||||||     |||| |||  
  cu acg gu      cguucuu uUAUUCCU  AAA  CCCCGU     ugau cag c
gg  -   u  ----ga       g        -A   AU      AAUuc    u   u 

>ptr-mir-367 (-25.90)   [ptr-miR-367:44-65]

c               ua     c    uugaa 
 cauuacuguugcuaa  ugcaa ucug     u
 |||||||||||||||  ||||| ||||      
 guAGUGGUAACGAUU  ACGUU Aggu     a
-               UC     A    uaaau 

>ptr-mir-369 (-29.10)   [ptr-miR-369:43-63]

-   ag               ua      cuuua 
 uga  ggagaucgaccgugu  uauucg     u
 |||  |||||||||||||||  ||||||      
 acu  UUUCUAGUUGGUACA  AUAAgc     u
g   cu               UA      uucag 

>ptr-mir-370 (-32.20)   [ptr-miR-370:47-68]

-     agaa       ca gu   u    u   a ag 
 gacag    gccaggu  c  cuc gcag uac c  c
 |||||    |||||||  |  ||| |||| ||| |  u
 cuguc    UGGUCCA  G  GGG CGUC Gug g  c
u     ----       AG UG   U    C   a ca 

>ptr-mir-371 (-36.90)   [ptr-miR-371:41-63]

-           cu    g         u   c 
 uggcacucaaa  gugg ggcacuuuc gcu u
 |||||||||||  |||| ||||||||| |||  
 auUGUGAGUUU  UACC CCGUGAAag ugg c
c           UC    G         -   u 

>ptr-mir-372 (-27.10)   [ptr-miR-372:41-63]

ug   -         g -      a    gaug 
  ggc cucaaaugu g agcacu uucu    u
  ||| ||||||||| | |||||| ||||    c
  cUG GAGUUUACA C UCGUGA AAgg    c
ca   C         G G      -    ugaa 

>ptr-mir-374a (-34.10)   [ptr-miR-374a:12-33]

u    c   c            C           u 
 acau ggc aUUAUAAUACAA CUGAUAAGUGu a
 |||| ||| |||||||||||| |||||||||||  
 ugug cug uaauguuauguu gacuauucacg u
-    u   u            a           a 

>ptr-mir-374b (-41.40)   [ptr-miR-374b:11-32]

-  u    ug AU                     c 
 ac cgga  g  AUAAUACAACCUGCUAAGUGu c
 || ||||  |  |||||||||||||||||||||  
 ug gccu  u  uauuauguuggacgauucacg u
c  u    gu ac                     a 

>ptr-mir-375 (-25.80)   [ptr-miR-375:40-61]

c  -    a      ccu  c     c  gac 
 cc cgcg cgagcc   cg acaaa cg   c
 || |||| ||||||   || ||||| ||    
 gg GUGC GCUCGG   GC UGUUU gc   u
-  A    -      CUU  U     u  gag 

>ptr-mir-376a-1 (-18.00)   [ptr-miR-376a:43-63]

-    g  a    c    u      --gua   u 
 aaaa gu gauu uccu cuauga     cau a
 |||| || |||| |||| ||||||     ||| u
 uuuU CA CUAA AGGA GAUACU     gua u
c    G  C    A    -      Aauua   u 

>ptr-mir-376a-2 (-26.30)   [ptr-miR-376a:49-69]

-     u    g  a         u         --   g 
 guauu aaaa gu gauuuuccu cuaugguua  cgu u
 ||||| |||| || ||||||||| |||||||||  ||| u
 uauga uuuU CA CUAAAAGGA GAUACUAau  gua u
c     c    G  C         -         ug   g 

>ptr-mir-376b (-32.90)   [ptr-miR-376b:61-82]

aguccuuc         u           a     u     uuuacg    u 
        uuugguauu aaaacguggau uuccu cuaug      ugau c
        ||||||||| ||||||||||| ||||| |||||      |||| c
        aaacuauga uuUUGUACCUA AAGGA GAUAC      auug u
---gucgu         c           A     -     ----UA    g 

>ptr-mir-376c (-23.22)   [ptr-miR-376c:42-62]

-   g     ua     u         uguua 
 aaa gugga  uuccu cuauguuua     u
 ||| |||||  ||||| |||||||||     u
 uuU CACCU  AAGGA GAUACAAau     u
u   G     UA     -         uggua 

>ptr-mir-377 (-27.80)   [ptr-miR-377:44-65]

u              c   -    a    - uuu 
 gagcagagguugcc uug guga uucg c   a
 |||||||||||||| ||| |||| |||| |   u
 uuUGUUUUCAACGG AAC CACU Aagu g   u
g              A   A    -    u uau 

>ptr-mir-378 (-38.80)   [ptr-miR-378:42-62]

-  g  c              ugu      ccu 
 gg cu cugacuccaggucc   guguua   a
 || || ||||||||||||||   ||||||    
 cc GA GACUGAGGUUCAGG   CAcgau   g
u  G  A              --U      aaa 

>ptr-mir-379 (-26.20)   [ptr-miR-379:5-25]

-   a    A       GA       -  uu u 
 gag UGGU GACUAUG  ACGUAGG cg  a g
 ||| |||| |||||||  ||||||| ||  |  
 cuc auca cugguac  uguaucc gu  u a
u   a    c       aa       a  cu u 

>ptr-mir-380 (-24.00)   [ptr-miR-380:39-60]

-     guu       ga       c   c 
 agaug   gaccaua  acaugcg uau u
 |||||   |||||||  ||||||| |||  
 UCUAC   CUGGUAU  UGUAUgc gug c
U     -AC       AA       u   u 

>ptr-mir-381 (-34.40)   [ptr-miR-381:48-69]

-     a  c   g        u        --g   u 
 acuua ag gag uugcccuu guauauuc   guu a
 ||||| || ||| |||||||| ||||||||   |||  
 ugagU UC CUC AACGGGAA CAUAUaag   cag u
a     G  U   G        -        gua   u 

>ptr-mir-382 (-28.00)   [ptr-miR-382:10-31]

ac         -A           UG      - uuu 
  uugaagaGA  GUUGUUCGUGG  GAUUCG c   a
  |||||||||  |||||||||||  |||||| |   c
  gacuuuuuu  caacaggcacu  cuaagc g   u
au         ca           ua      a uau 

>ptr-mir-383 (-26.50)   [ptr-miR-383:7-28]

cuccucA      AA    A        uug   gga 
       GAUCAG  GGUG UUGUGGCU   ggu   u
       ||||||  |||| ||||||||   |||    
       cugguc  ucac gacaccga   cua   a
agaaaga      cg    -        ---   auu 

>ptr-mir-409 (-38.30)   [ptr-miR-409:46-67]

-     u  gg   a    ac         -    - auc 
 gguac cg  gag gguu  ccgagcaac uuug c   u
 ||||| ||  ||| ||||  ||||||||| |||| |    
 cuaug gc  uUC CCAA  GGCUCGUUG AAGc g   g
a     -  uu   C    GU         U    a cag 

>ptr-mir-410 (-34.20)   [ptr-miR-410:49-69]

-    c      g    ug      a  a     - uuuu 
 guac ugagaa aggu  ucugug ug guucg c    a
 |||| |||||| ||||  |||||| || ||||| |     
 caug acuuuU UCCG  AGACAC AU UAAgc g    u
c    -      G    GU      A  A     a uaau 

>ptr-mir-411 (-30.00)   [ptr-miR-411:15-35]

---------------      ug   a a    A      A A       - uuu 
               gguacu  gag g UAGU GACCGU U GCGUACG c   a
               ||||||  ||| | |||| |||||| | ||||||| |   u
               cuauga  cuc c auca cuggca a uguaugc g   c
gagccccuaccuaaa      --   c a    c      c a       a ugu 

>ptr-mir-412 (-34.70)   [ptr-miR-412:53-75]

-----ug      gg      a    c      u   aa    -    u 
       ggguac  ggaugg uggu gaccag ugg  agua auug u
       ||||||  |||||| |||| |||||| |||  |||| ||||  
       ccuaug  ccUGCC AUCA CUGGUC ACU  UCAu uaau u
gacgucg      --      G    C      C   --    g    c 

>ptr-mir-421 (-35.20)   [ptr-miR-421:48-70]

---g    uu      -    uua            a   aaa 
    caca  guaggc cuca   aauguuuguuga uga   a
    ||||  |||||| ||||   |||||||||||| |||   a
    gugu  cgucCG GGGU   UUACAGACAACU Acu   u
ucua    cu      C    UAA            -   aag 

>ptr-mir-422a (-40.00)   [ptr-miR-422a:10-31]

----   --a     AC   A       U    AG    ga    - uc 
    gag   gaagc  UGG CUUAGGG CAGA  GCcu  gucu c  u
    |||   |||||  ||| ||||||| ||||  ||||  |||| |   
    cuc   uuucg  acc gaguccc gucu  cggg  uaga g  g
gucc   cug     -a   -       u    cu    --    c uc 

>ptr-mir-423 (-48.80)   [ptr-miR-423:53-75]

----auaa       u            -ag   g    a     cua 
        aggaagu aggcugaggggc   aga cgag cuuuu   u
        ||||||| ||||||||||||   ||| |||| |||||   u
        uccuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
gcgcccca       u            GAG   G    -     ccu 

>ptr-mir-424 (-42.30)   [ptr-miR-424:11-32]

--------------------       a  C      AA             g   u 
                    cgagggg ua AGCAGC  UUCAUGUUUUGAA ugu c
                    ||||||| || ||||||  ||||||||||||| ||| u
                    gcucccc au ucgucg  gagugcaaaacuu gua a
ggguggaagauggaaggggu       c  a      cg             g   a 

>ptr-mir-425 (-33.60)   [ptr-miR-425:14-36]

-gaa      uu  AAU       U  C     U  A  -----  g 
    agcgcu  gg   GACACGA CA UCCCG UG gu     gg c
    ||||||  ||   ||||||| || ||||| || ||     ||  
    ucguga  cc   cugugcu gu agggc ac cg     cc a
uuuc      -c  -gc       -  a     u  -  aagag  c 

>ptr-mir-431 (-43.60)   [ptr-miR-431:19-39]

----------------cc  c     c       U          C  U A     ----   aca 
                  ug uuguc ugcgagg GUCUUGCAGG CG C UGCAg    gcc   c
                  || ||||| ||||||| |||||||||| || | |||||    |||    
                  ac agcag acgcucu cgggacguuc gc g acguu    ugg   u
gcagcaaccacuacuccu  -     a       u          u  u g     gcaa   cag 

>ptr-mir-432 (-42.10)   [ptr-miR-432:13-35]

-  -  c       U U     UA       G     a   u -  uu 
 ga cu cuccagg C UGGAG  GGUCAUU GGUGG ucc c ua  u
 || || ||||||| | |||||  ||||||| ||||| ||| | ||   
 cu ga gagguuc g accuc  ucgguag ucacc ggg g au  c
a  a  u       u u     -c       g     -   u c  uc 

>ptr-mir-433 (-37.00)   [ptr-miR-433:63-84]

cgg      gua   u           u   --------  g     cu 
   ggagaa   cgg gagccugucau auu        ca agagg  a
   ||||||   ||| ||||||||||| |||        || |||||   
   ccucuU   GCU CUCGGGUAGUA UAg        gu ucucc  g
gga      GUG   C           C   gaagaguu  g     ua 

>ptr-mir-448 (-49.80)   [ptr-miR-448:70-91]

------------cc       u a            g   u     ga au    auu  au 
              gggaggu g acauccugcaua ugc gccag  a  cccu   uc  a
              ||||||| | |||||||||||| ||| |||||  |  ||||   ||   
              cccucUA C UGUAGGAUGUAU ACG Ugguc  u  gggg   ag  u
acugcuucacccga       C C            -   U     gg cg    ---  aa 

>ptr-mir-449a (-36.30)   [ptr-miR-449a:15-36]

--      ug     c       -    U      U  U  aa   g 
  ugugug  augag UGGCAGU GUAU GUUAGC CG ug  uau u
  ||||||  ||||| ||||||| |||| |||||| || ||  |||  
  auauac  uauuc gucguca cgua caaucg gc ac  gua g
ac      gu     u       a    -      -  u  -g   a 

>ptr-mir-449b (-35.60)   [ptr-miR-449b:15-36]

----------ga  u   u     A     U   UU   A C        u  gu 
            cc gaa caggu GGCAG GUA  GUU G UGGCugcu gg  c
            || ||| ||||| ||||| |||  ||| | |||||||| ||   
            gg cuu guuca ccguc cau  caa c accgacga cu  a
ucuucuuaaaua  u   c     -     c   --   - -        -  ga 

>ptr-mir-450a-1 (-35.40)   [ptr-miR-450a:18-39]

-aaac     u       UUU     U              cac 
     gauac aaacugu   UGCGA GUGUUCCUAAUAUg   u
     ||||| |||||||   ||||| ||||||||||||||   a
     cuaug uuugaua   acguu uacaaggguuauau   u
uauaa     u       ugu     u              aaa 

>ptr-mir-450a-2 (-35.40)   [ptr-miR-450a:23-44]

ccaaagaaa     u       UUU     U               aa 
         gaugc aaacuau   UGCGA GUGUUCCUAAUAUgu  u
         ||||| |||||||   ||||| |||||||||||||||  a
         cuaug uuugaua   acguu uacagggguuaugua  u
guauaauaa     u       cuu     u               aa 

>ptr-mir-450b (-23.50)   [ptr-miR-450b:48-69]

-          uuu     u   u    g    ug aa 
 gcagaauuau   ugcaa aug uccu aaua  u  u
 ||||||||||   ||||| ||| |||| ||||  |  a
 uguuuugAUA   ACGUU UAC AGGG UUau  g  u
a          CCU     U   U    -    gu aa 

>ptr-mir-451 (-44.60)   [ptr-miR-451:16-37]

-     a        gA                 A 
 uuggg auggcaag  AACCGUUACCAUUACUG G
 ||||| ||||||||  |||||||||||||||||  
 gaccc uaucguuc  uugguaaugguaaugau U
a     a        uc                 U 

>ptr-mir-452 (-38.40)   [ptr-miR-452:14-35]

gcu          AAC G        G  A        uuug 
   aagcacuuac   U UUUGCAGA GA ACUGAgac    u
   ||||||||||   | |||||||| || ||||||||    a
   uucgugaaug   a aaacgucu cu ugacucug    a
-gu          --a g        a  c        uauc 

>ptr-mir-453 (-24.20)   [ptr-miR-453:43-65]

-----cag     c       agugccaccucaugguacuc 
        gaaug ugcgagc                    g
        ||||| |||||||                     
        uuuau ACGCUUG                    g
cguaguaa     u       AGUGGUGCCUGUUGGAggga 

>ptr-mir-454 (-40.40)   [ptr-miR-454:64-86]

u       ----  --a     uc            ---         ----   --u     g 
 cuguuua    uc   ccaga  cuagaacccuau   caauauugu    cuc   gcugu u
 |||||||    ||   |||||  ||||||||||||   |||||||||    |||   |||||  
 gacgggu    ag   gguuu  gguuuUGGGAUA   GUUAUAACG    gag   ugaua a
-       aaca  aaa     gu            UUC         UGAU   ucu     a 

>ptr-mir-455 (-41.60)   [ptr-miR-455:53-73]

-----cccu   -g     -----          u      a   c   gaa 
         ggc  ugagg     guaugugccu uggacu cau gug   g
         |||  |||||     |||||||||| |||||| ||| |||    
         ccg  acucc     CAUAUACGGG ACCUGA Gua cac   c
cuacuguau   ga     guuCA          U      C   c   gac 

>ptr-mir-484 (-33.60)   [ptr-miR-484:7-28]

-   ----uc      CUCA   C       AU   -c    a 
 gcc      gUCAGG    GUC CCUCCCG  aaa  cccu a
 |||      ||||||    ||| |||||||  |||  ||||  
 cgg      cggucc    cag ggggggc  uuu  ggga a
g   uuuuuu      ----   u       cc   ca    u 

>ptr-mir-485 (-33.30)   [ptr-miR-485:45-66]

-  ug        cu       -    a    auuc 
 cu  gagagagg  ggccgug auga uucg    a
 ||  ||||||||  ||||||| |||| ||||    u
 ga  uUCUCUCC  UCGGCAC UACU Gagc    c
u  uu        UC       A    -    gaaa 

>ptr-mir-486 (-48.50)   [ptr-miR-486:4-25]

gc                      ----   ccuu 
  aUCCUGUACUGAGCUGCCCCGA    Ggc    c
  ||||||||||||||||||||||    |||     
  uaggacaugacucgacggggcu    ccg    a
-a                      cgac   ucgu 

>ptr-mir-487a (-28.20)   [ptr-miR-487a:48-69]

-     u     g   uua      c    -    - uga 
 guacu gaaga ugg   ucccug ugug uucg c   a
 ||||| ||||| |||   |||||| |||| |||| |   u
 uauga uuuUU ACC   AGGGAC AUAC AAgc g   u
c     c     G   UAC      -    U    a uau 

>ptr-mir-487b (-34.60)   [ptr-miR-487b:50-71]

-       ug        uuau      c u     uuuug 
 ugguacu  gagagugg    cccugu c guucg     c
 |||||||  ||||||||    |||||| | |||||      
 acuauga  uuUUCACC    GGGACA G UAAgc     u
a       cu        UACU      U C     uguac 

>ptr-mir-488 (-30.10)   [ptr-miR-488:52-72]

g   a      cu  c   u      a  c        guu 
 aga ucaucu  cc aga aauggc cu ucaaacaa   u
 ||| ||||||  || ||| |||||| || ||||||||   u
 ucu aguaga  GG UCU UUAUCG GA AGUUuguu   c
-   c      CU  U   -      -  A        aaa 

>ptr-mir-489 (-35.90)   [ptr-miR-489:52-73]

g      c     g             c c    ua     a 
 uggcag uuggu gucguauguguga g cauu  cuuga c
 |||||| ||||| ||||||||||||| | ||||  |||||  
 aucguc aauCG CGGCAUAUACACU C GUGa  ggauu c
-      a     A             A A    --     u 

>ptr-mir-490 (-54.40)   [ptr-miR-490:75-96]

-     -cc      g    -   aguucauu        c      --         g   caa   u 
 ggagg   uugcug uuug gaa        guucgaca caugga  ucuccaggu ggu   guu a
 |||||   |||||| |||| |||        |||||||| ||||||  ||||||||| |||   |||  
 ccuuc   ggcgac gaac cuu        cgaguuGU GUACCU  GGAGGUCCA Cca   uag g
a     aca      -    a   ------gu        C      CA         A   -cg   a 

>ptr-mir-491 (-48.70)   [ptr-miR-491:49-70]

-u        ug     u      cc   c          a 
  gacuuagc  gguag ggggaa  cuu caugaggagu g
  ||||||||  ||||| ||||||  ||| |||||||||| a
  uugggucg  cCAUC UCCCUU  GAA GUAUUCcuca a
gg        gu     U      -A   C          c 

>ptr-mir-492 (-39.70)   [ptr-miR-492:29-50]

-aa  a      cuacuacag  c   caAG  C          AG       -  g -  c 
   cu cagcca         ga cau    GA CUGCGGGACA  AUUCUgg gu c ca c
   || ||||||         || |||    || ||||||||||  ||||||| || | ||  
   ga gucggu         cu gua    cu gacguccugu  uaggacc ca g gu a
gua  c      ------caa  c   acaa  a          --       g  a a  u 

>ptr-mir-494 (-31.30)   [ptr-miR-494:47-68]

-     c            gu      -   c   -  uuu 
 auacu gaaggagagguu  ccgugu ugu uuc uc   a
 ||||| ||||||||||||  |||||| ||| ||| ||   u
 uauga uuuuuuCUCCAA  GGCACA ACA AAG ag   u
c     -            AG      U   -   U  uau 

>ptr-mir-495 (-35.60)   [ptr-miR-495:49-70]

-      u          u  -       au     - uuu 
 gguacc gaaaagaagu gc ccauguu  uuucg c   a
 |||||| |||||||||| || |||||||  ||||| |   u
 cuaugg uuuUUCUUCA CG GGUACAA  AAAgc g   a
a      c          -  U       AC     a ugu 

>ptr-mir-496 (-41.10)   [ptr-miR-496:55-76]

-     -----uca     u    u        u     gu         uua 
 ccaag        gguac cgaa ggagguug ccaug  guguucauu   u
 |||||        ||||| |||| |||||||| |||||  |||||||||    
 gguuc        ucaug gcuu cCUCUAAC GGUAC  UAUGAGUag   u
g     uucuuaac     -    u        C     AU         uau 

>ptr-mir-498 (-59.90)   [ptr-miR-498:34-56]

acc  c       -aag  aag            -         -A     C       uaua 
   cu ccuuggg    ug   cucaggcuguga UUUCAAGCC  GGGGG GUUUUUC    a
   || |||||||    ||   |||||||||||| |||||||||  ||||| |||||||    c
   ga ggaaucu    ac   gaguuugacacu gaaguucgg  ccucc cgaaaag    u
-uu  a       gcua  -ga            c         ga     a       uagg 

>ptr-mir-499 (-60.92)   [ptr-miR-499:69-90]

-        ccugu  cuu   -    c   u  ua        a          acucc 
 cccugucc     gc   ggg cggg agc gu  agacuugc gugauguuua     u
 ||||||||     ||   ||| |||| ||| ||  |||||||| ||||||||||     c
 gggacggg     cg   ccc gccc ucg CG  UCUGAACG CACUACAAgu     u
u        uccgu  cau   u    u   U  UG        A          gcacc 

>ptr-mir-500 (-31.50)   [ptr-miR-500:12-34]

---   c c   ucU         UAC UG    AGAg   ugu 
   cuc c cuc   AAUCCUUGC   C  GGUG    ugc   c
   ||| | |||   |||||||||   |  ||||    |||   u
   gag g gag   uuaggaacg   g  ccac    acg   g
cga   c c   -uc         --- gu    -gua   uaa 

>ptr-mir-501 (-40.10)   [ptr-miR-501:50-71]

-   u       -u       u u   u     agag   uuu 
 cuc uccucuc  aauccuu g ccc gggug    ugc   c
 ||| |||||||  ||||||| | ||| |||||    |||   u
 gag gggagag  UUAGGAA C GGG CCCAC    Acg   g
c   u       UC       - -   -     -GUA   uaa 

>ptr-mir-502 (-59.00)   [ptr-miR-502:15-35]

-             -         UAU UG     UAg   ugg 
 gcucccccucucu aAUCCUUGC   C  GGUGC   ugc   c
 ||||||||||||| |||||||||   |  |||||   |||   u
 cgagggggagaga uuaggaacg   g  ccacg   acg   c
u             c         --- gu     -ua   uaa 

>ptr-mir-503 (-41.30)   [ptr-miR-503:6-28]

u     A              U  G  Gu     a 
 gcccU GCAGCGGGAACAGU CU CA  gagcg u
 ||||| |||||||||||||| || ||  ||||| c
 uggga cgucgccuuuguua ga gu  cucgu g
-     c              u  g  --     g 

>ptr-mir-504 (-50.90)   [ptr-miR-504:13-34]

g  g    -            G          -A  u   u 
 cu cugu ugggAGACCCUG UCUGCACUCU  UC gua u
 || |||| |||||||||||| ||||||||||  || |||  
 gg gaca acccuuugggac ggacgugagg  ag cau c
g  a    u            g          ga  u   u 

>ptr-mir-505 (-42.40)   [ptr-miR-505:51-72]

g    ac    u           g    a        ucug 
 augc  ccag gggggagccag aagu uugauguu    c
 ||||  |||| ||||||||||| |||| ||||||||    c
 uacg  gguc cUCCUUUGGUC UUCA AACUGCga    a
-    -a    u           G    C        uuug 

>ptr-mir-511 (-29.20)   [ptr-miR-511:15-35]

-   a   ac    cG           CU   G   g   aua 
 aau gac  ccau  UGUCUUUUGCU  GCA UCA uaa   u
 ||| |||  ||||  |||||||||||  ||| ||| |||    
 uua cug  ggua  acagaaaacga  ugu agu guu   u
g   c   gu    ag           ug   a   -   guu 

>ptr-mir-512 (-45.50)   [ptr-miR-512:50-71]

-       ug   ca      cu   g         uggug 
 cucaguc  ugg  cucagc  uga ggcacuuuc     u
 |||||||  |||  ||||||  ||| |||||||||      
 gagucag  acC  GAGUCG  ACU UCGUGAAag     c
g       ua   UG      AU   G         uaaga 

>ptr-mir-515-1 (-40.00)   [ptr-miR-515:50-71]

-    u     c  u           a    uu      gu 
 cuca gcagu au cuccaaaagaa gcac  ucuguu  c
 |||| ||||| || ||||||||||| ||||  ||||||  u
 gagu uguca UG GAGGUUUUCUU CGUG  AGacga  g
a    u     U  C           C    --      aa 

>ptr-mir-515-2 (-40.00)   [ptr-miR-515:50-71]

-    u     c  u           a    uu      gu 
 cuca gcagu au cuccaaaagaa gcac  ucuguu  c
 |||| ||||| || ||||||||||| ||||  ||||||  u
 gagu uguca UG GAGGUUUUCUU CGUG  AGacga  g
a    u     U  C           C    --      aa 

>ptr-mir-516a-1 (-48.90)   [ptr-miR-516a:60-77]

-                  c    aaa            guug  u 
 cucaggcugugaccuucu gagg   gaagcacuuucu    uc g
 |||||||||||||||||| ||||   ||||||||||||    || a
 gaguuuggcauUGGGAGA UUUC   CUUCGUgaaaga    ag a
a                  C    ---            --aa  a 

>ptr-mir-516a-2 (-44.80)   [ptr-miR-516a:60-77]

-    gg            c    aaa            guug  u 
 cuca  uugugaccuucu gagg   gaagcacuuucu    uc g
 ||||  |||||||||||| ||||   ||||||||||||    || a
 gagu  ggcauUGGGAGA UUUC   CUUCGUgaaaga    ag a
a    uu            C    ---            --aa  a 

>ptr-mir-516b-1 (-44.90)   [ptr-miR-516b:15-36]

-      cu      A        UAA            g    g 
 cucaga  gugacc UCUGGAGG   GAAGCACUUUcu uuuu u
 ||||||  |||||| ||||||||   |||||||||||| |||| g
 gaguuu  cauugg agacuuuc   cuucgugaaaga aaga a
a      cu      g        ---            a    a 

>ptr-mir-516b-2 (-38.50)   [ptr-miR-516b:15-36]

-    -u  u      A        UAA          g g    g 
 cuca  ga gugacc UCUGGAGG   GAAGCACUUU u uuuu u
 ||||  || |||||| ||||||||   |||||||||| | |||| g
 gagu  cu cauugg agacuuuc   cuucgugaaa a aaga a
a    uu  -      g        ---          g a    a 

>ptr-mir-517a (-42.00)   [ptr-miR-517a:53-74]

-             c       u   a    u    g  g a 
 cucaggcagugac cucuaga gga gcac gucu uu u u
 ||||||||||||| ||||||| ||| |||| |||| || | a
 gaguuugucauUG GAGAUUU CCU CGUG UAga aa a a
a             U       C   A    C    a  g a 

>ptr-mir-517b-1 (-26.10)   [ptr-miR-517b:5-26]

-    C       U   A    U    guug  u 
 ugac CUCUAGA GGA GCAC GUCU    uc u
 |||| ||||||| ||| |||| ||||    ||  
 auug gagauuu ccu cgug uaga    ag a
c    u       c   a    c    --aa  a 

>ptr-mir-517b-2 (-24.42)   [ptr-miR-517b:5-26]

-    C       U   A    U    guugu 
 ugac CUCUAGA GGA GCAC GUCU     c
 |||| ||||||| ||| |||| ||||     u
 auug gagauuu ccu cgug uaga     a
c    u       c   a    c    aaaga 

>ptr-mir-518a (-48.80)   [ptr-miR-518a:52-73]

-            cu u            c      guug  u 
 cucaggcuguga  c gcaaagggaagc cuuucu    uc a
 ||||||||||||  | |||||||||||| ||||||    || a
 gaguuuggcauu  G CGUUUCCCUUCG GAAAGa    ag a
a            AG U            C      --aa  a 

>ptr-mir-518b (-38.90)   [ptr-miR-518b:50-71]

-  u      gc    c      a       uc    g  u 
 ca gcugug  ccuc agaggg agcgcuu  uguu uc g
 || ||||||  |||| |||||| |||||||  |||| || a
 gu uggcau  GGAG UUUCCC UCGCGAA  ACaa ag a
a  u      uU    A      C       --    a  a 

>ptr-mir-518c (-46.40)   [ptr-miR-518c:61-83]

caagaaga     u        u              a   uc    g  u 
        ucuca gcugugac cucuggagggaagc cuu  uguu uc g
        ||||| |||||||| |||||||||||||| |||  |||| || a
        agagu uggcauUG GAGAUUUCUCUUCG GAA  ACaa ag a
---cgaaa     u        U              C   --    a  a 

>ptr-mir-518d (-37.70)   [ptr-miR-518d:52-72]

-cc  u       cc              a    cu   g  u 
   ca gcuguga  cucuagagggaagc cuuu  guu uc g
   || |||||||  |||||||||||||| ||||  ||| || a
   gu uggcauu  GAGGUUUCCCUUCG GAAA  caa ag a
aga  u       aC              C    -C   -  a 

>ptr-mir-518e (-44.96)   [ptr-miR-518e:53-73]

-     -  ug    c    ag               guuggc 
 cucag gc  ugac cucu  agggaagcgcuuucu      u
 ||||| ||  |||| ||||  |||||||||||||||      a
 gaguu cg  auuG GAGA  UCCCUUCGCGAAAga      a
a     u  ca    U    CU               aaagaa 

>ptr-mir-518f (-41.50)   [ptr-miR-518f:52-72]

-    ugcu    c               a     ---    gu 
 cuca    guga ccucuagagggaagc cuuuc   ucuu  c
 ||||    |||| ||||||||||||||| |||||   ||||   
 gagu    cauu GGAGAUUUCUCUUCG GAAAG   agaa  u
a    uucu    a               C     aaa    aa 

>ptr-mir-519a (-38.00)   [ptr-miR-519a:53-74]

-       u   u c     c     a         guug  u 
 cucaggc gug c cucua aggga gcgcuuucu    uc g
 ||||||| ||| | ||||| ||||| |||||||||    || a
 gaguuug cau G GAGAU UUCCU CGUGAAAgg    ag a
a       u   U U     U     A         --aa  a 

>ptr-mir-519b (-37.70)   [ptr-miR-519b:50-71]

-au  u    c            a         guug  u 
   gc guga ccucuagaggga gcgcuuucu    uc g
   || |||| |||||||||||| |||||||||    || a
   ug cauU GGAGAUUUUCCU CGUGAAAga    ag a
guu  u    U            A         --aa  a 

>ptr-mir-519c (-44.40)   [ptr-miR-519c:53-74]

-     c      c            a         guug  u 
 cucag cuguga ccucuagaggga gcgcuuucu    uc g
 ||||| |||||| |||||||||||| |||||||||    || a
 gaguu gacauU GGAGAUUUUUCU CGUGAAAga    ag a
a     u      A            A         --aa  a 

>ptr-mir-519d (-42.20)   [ptr-miR-519d:53-74]

-    u  u     c   c       a      uc      uuu 
 ccca gc gugac cuc aaaggga gcgcuu  uguuug   u
 |||| || ||||| ||| ||||||| ||||||  ||||||    
 gggu ug cauuG GAG UUUCCCU CGUGAA  ACaaac   c
a    u  c     U   A       C      --      ucu 

>ptr-mir-519e (-35.40)   [ptr-miR-519e:54-75]

-    u     c  u   c      ga      uc    g  u 
 cuca gcagu au cuc aaaagg  gcacuu  uguu uc g
 |||| ||||| || ||| ||||||  ||||||  |||| || a
 gagu uguca UG GAG UUUUCC  CGUGAA  acaa ag a
a    u     U  U   A      UC      --    a  a 

>ptr-mir-520a (-50.40)   [ptr-miR-520a:52-73]

-        ug  cc                    g  g    
 ucaggcug  ac  uccagagggaaguacuuucu uu ucu 
 ||||||||  ||  |||||||||||||||||||| || || g
 aguuuggc  UG  AGGUUUCCCUUCGUGAAAga aa aga 
g        gu  UC                    a  g    

>ptr-mir-520b (-34.20)   [ptr-miR-520b:40-60]

-      c               guug  u 
 ccucua agggaagcgcuuucu    uc g
 |||||| |||||||||||||||    || a
 GGAGAU UUCCUUCGUGAAAga    ag a
G      U               --aa  a 

>ptr-mir-520c (-50.50)   [ptr-miR-520c:16-37]

-       u  cg                       GUug  u 
 cucaggc gu  uccUCUAGAGGGAAGCACUUUCU    uc g
 ||||||| ||  |||||||||||||||||||||||    || a
 gaguuug ca  gggagauuuuccuucgugaaaga    ag a
a       c  uu                       --aa  a 

>ptr-mir-520d (-47.60)   [ptr-miR-520d:53-74]

-               ua           c      guug  u 
 cucaagcugugacuc  caaagggaagc cuuucu    uc a
 |||||||||||||||  ||||||||||| ||||||    || a
 gaguuuggcauUGGG  GUUUCUCUUCG GAAAga    ag a
a               UG           U      --aa  a 

>ptr-mir-520e (-48.20)   [ptr-miR-520e:53-73]

-   cu  u             u       g     guug   g 
 cuc  gc gugacccucaaga ggaagca uuucu    ucu a
 |||  || ||||||||||||| ||||||| |||||    |||  
 gag  ug cauuGGGAGUUUU CCUUCGU AAAga    agg a
a   uu  u             U       G     ---a   a 

>ptr-mir-520f (-51.80)   [ptr-miR-520f:54-75]

-       u                        u  gugg  a 
 cucaggc gugacccucuaaagggaagcgcuu cu    uc g
 ||||||| |||||||||||||||||||||||| ||    || a
 ggguuug caUUGGGAGAUUUUCCUUCGUGAA ga    ag a
a       c                        c  --aa  a 

>ptr-mir-520g (-34.22)   [ptr-miR-520g:54-77]

-    ugcu     c         -ac      uc     guugu 
 ccca    gugac cucuagagg   gcacuu  uguuu     c
 ||||    ||||| |||||||||   ||||||  |||||     u
 gggu    cauUG GAGAUUUCC   CGUGAA  ACAaa     g
a    uuac     U         CUU      --     aaaga 

>ptr-mir-520h (-37.42)   [ptr-miR-520h:54-77]

-    cgcu     c         -        uc     guugu 
 ccca    gugac cucuagagg aagcacuu  uguuu     c
 ||||    ||||| ||||||||| ||||||||  |||||     u
 gggu    cauUG GAGAUUUCC UUCGUGAA  ACAaa     g
a    uuuc     U         C        --     aaaga 

>ptr-mir-521-1 (-35.10)   [ptr-miR-521:53-74]

-    g  u     c   c         aa u    guug  u 
 cuca gc gugac cuc aaagggaag  c uucu    uc a
 |||| || ||||| ||| |||||||||  | ||||    || a
 gagu ug cauUG GAG UUUCCCUUC  G AAga    ag a
a    g  c     U   A         AC C    --aa  a 

>ptr-mir-521-2 (-34.60)   [ptr-miR-521:53-74]

-    g  u     u   c         ---aa    c    gu 
 cuca gc gugac cuc aaagggaag     uuuu ucuu  c
 |||| || ||||| ||| |||||||||     |||| ||||   
 gagu ug cauUG GAG UUUCCCUUC     Agaa agaa  u
a    g  c     U   A         ACGCA    a    aa 

>ptr-mir-522 (-35.30)   [ptr-miR-522:53-74]

-     -  u   u c            g  c     guug  u 
 cucag gc gug c cucuagagggaa cg uuucu    uc g
 ||||| || ||| | |||||||||||| || |||||    || a
 gaguu cg cau G GAGAUUUCCCUU GU AAAga    ag a
a     u  -   U U            G  A     --aa  a 

>ptr-mir-523 (-44.20)   [ptr-miR-523:45-67]

--------u           g          u    guug  u 
         gugacccucua agggaagcgc uucu    uc g
         ||||||||||| |||||||||| ||||    || a
         cauUGGGAGAU UCCCUUCGCG AAGa    ag a
agaguuucc           A          C    --aa  a 

>ptr-mir-524 (-45.80)   [ptr-miR-524:52-72]

-    u        c  a           a      cuug     
 cuca gcugugac cu caaagggaagc cuuucu    ucca 
 |||| |||||||| || ||||||||||| ||||||    ||| a
 gagu uggcauug GA GUUUCCCUUCG GGAAGa    agga 
a    u        U  G           C      --aa     

>ptr-mir-525 (-38.60)   [ptr-miR-525:51-72]

-            u   c       u  a      c  aug 
 ucaagcugugac cuc agaggga gc cuuucu uu   u
 |||||||||||| ||| ||||||| || |||||| ||   g
 gguuuggcauuG GAG UUUCCCU CG GGAAGa aa   a
g            C   A       U  C      u  aaa 

>ptr-mir-526a-1 (-41.80)   [ptr-miR-526a:14-35]

-     cu    c               A      G  g  u 
 ucagg  guga cCUCUAGAGGGAAGC CUUUCU uu cu g
 |||||  |||| ||||||||||||||| |||||| || ||  
 aguuu  cauu ggagauuuuccuucg gaaaga aa ga a
g     cu    a               c      g  -  a 

>ptr-mir-526a-2 (-30.00)   [ptr-miR-526a:6-27]

-         AG     A   CU    Guug  u 
 ugaccCUCU  AGGGA GCA  UUCU    uc g
 |||||||||  ||||| |||  ||||    || a
 auugggaga  uuccu cgu  aaga    ag a
c         cu     a   ac    --aa  a 

>ptr-mir-526b (-45.60)   [ptr-miR-526b:13-35]

-     u    c     U                GUug  u 
 caggc guga cCUCU GAGGGAAGCACUUUCU    uc g
 ||||| |||| ||||| ||||||||||||||||    || a
 gucug cauu ggaga uuuccuucgugaaaga    ag a
a     u    c     u                --aa  a 

>ptr-mir-527 (-44.40)   [ptr-miR-527:15-34]

-            c  UG           C      guug  u 
 cucaggcuguga uC  CAAAGGGAAGC CUUUCu    uc a
 |||||||||||| ||  ||||||||||| ||||||    || a
 gaguuuggcauu ag  guuucccuucg gaaaga    ag a
a            a  ug           u      --aa  a 

>ptr-mir-532 (-30.92)   [ptr-miR-532:56-77]

gacuu    u    c  c  u      a    a   cc  uggca 
     gcuu cucu cu ca gccuug gugu gga  gu     u
     |||| |||| || || |||||| |||| |||  ||     c
     cgag gaga gA GU CGGAAC CACA CCU  ca     u
---uc    c    a  C  U      C    C   CC  uuaau 

>ptr-mir-539 (-28.70)   [ptr-miR-539:8-29]

-    ug          A      G    -    - uuu 
 uacu  aGGAGAAAUU UCCUUG UGUG Uucg c   a
 ||||  |||||||||| |||||| |||| |||| |   u
 auga  uuuucuuuaa aggaac auac aagu g   u
u    gu          c      -    u    a uau 

>ptr-mir-543 (-24.30)   [ptr-miR-543:46-67]

---   u  u       u  -     ---u    u    uu 
   acu aa gagaagu gc ccgug    uuuu ucgc  u
   ||| || ||||||| || |||||    |||| ||||  a
   uga uu UUCUUCA CG GGCGC    AAAg agug  u
cua   c  c       -  U     UUAC    c    uu 

>ptr-mir-544 (-32.60)   [ptr-miR-544:54-75]

-uuuu      cua    u           -     u   -ga  c 
     caucac   ggga cuuguuaaaaa gcaga ucu   uu a
     ||||||   |||| ||||||||||| ||||| |||   ||  
     guagug   cuCU GAACGAUUUUU CGUCU Aga   ag g
uaauc      -aa    U           A     U   acc  g 

>ptr-mir-545 (-36.12)   [ptr-miR-545:63-84]

---ccc   ccgg   a         - u            a  a     auaaa 
      agc    cac uuaguaggc c caguaaauguuu uu gauga     u
      |||    ||| ||||||||| | |||||||||||| || |||||     g
      ucg    gug aaucgucCG G GUUAUUUACAAA GA CUacu     a
gacacc   ---a   a         U U            C  -     cagua 

>ptr-mir-548a-1 (-35.40)   [ptr-miR-548a:60-81]

----g    gagguauuaag                   g u     c a   a 
     cagg           uuggugcaaaaguaauugu g uuuug c uua a
     ||||           ||||||||||||||||||| | ||||| | |||  
     gucc           aaccaCGUUUUCAUUAACG U AAAAC g aau a
uuaua    ----------a                   G C     a c   g 

>ptr-mir-548a-2 (-28.90)   [ptr-miR-548a:60-81]

gugaug        guuu            c  -g     uu  c     a 
      uguauuag    gugcaaaaguaa ug  gguuu  ug cauua a
      ||||||||    |||||||||||| ||  |||||  || |||||  
      auauaauc    caCGUUUUCAUU AC  UCAAA  AC guaau a
-----a        aaac            A  GG     --  a     g 

>ptr-mir-548b (-43.90)   [ptr-miR-548b:61-82]

cagacuauauau                       ca     g   uuuau 
            uuagguuggcgcaaaaguaauug  guuuu gcc     u
            |||||||||||||||||||||||  ||||| |||      
            aauccaaccgUGUUUUCGUUGAC  CAAGA Cgg     u
--------ucau                       UC     A   uaacu 

>ptr-mir-548c (-46.90)   [ptr-miR-548c:61-82]

cauuggcauc                         c         cau   u 
          uauuagguuggugcaaaaguaauug gguuuuugc   uac u
          ||||||||||||||||||||||||| |||||||||   ||| u
          auaauucaaccaCGUUUUCAUUAAC CUAAAAACg   aug c
--------uc                         U         ---   a 

>ptr-mir-548f-1 (-45.60)   [ptr-miR-548f:48-66]

---                 a   --             uac 
   uuagguuggugcaaaag aau  caguuuuugccau   u
   ||||||||||||||||| |||  |||||||||||||    
   aauccaaccacgUUUUC UUA  GUCAAAAAcggua   u
gau                 A   AU             ucu 

>ptr-mir-548f-2 (-43.40)   [ptr-miR-548f:54-72]

-                cc        a           uuu 
 auuagguuggugcaaa  uaauugca uuuuugcaguu   u
 ||||||||||||||||  |||||||| |||||||||||   u
 uaauccaaccacgUUU  AUUAAUGU AAAAAcguuaa   a
a                UC        C           uga 

>ptr-mir-548h (-44.20)   [ptr-miR-548h:21-42]

-----ucugucc       g              CG        GU     c 
            auuaggu ggugcAAAAGUAAU  CGGUUUUU  Cauua u
            ||||||| ||||||||||||||  ||||||||  |||||  
            uaaucca ucacguuuucauua  gucaaaaa  guaau u
uauaccgaauua       g              ag        ug     u 

>ptr-mir-548i-1 (-70.30)   [ptr-miR-548i:39-60]

c         -----         -----------caccc                          GGA           a 
 agauggcuc     cgaaguuug                uauuagguuggugcAAAAGUAAUUGC   UUUUGCCauua a
 |||||||||     |||||||||                ||||||||||||||||||||||||||   |||||||||||  
 ucuaccgag     guuucaaac                augauccgaccauguuuuuauuaacg   aaaacgguaau c
c         ucccu         caucuuccucuuuucu                          aua           g 

>ptr-mir-548i-2 (-66.10)   [ptr-miR-548i:39-60]

c         -----         -----------caucc                          G A       a   a 
 agauggcuc     cgaaguuug                uauuagguuggugcAAAAGUAAUUGC G UUUUGCC uua a
 |||||||||     |||||||||                |||||||||||||||||||||||||| | ||||||| |||  
 ucuaccgag     guuucaaac                augauccgaccauguuuuuauuaacg c aaaacgg aau a
c         ucccu         caucuuccucuuuucu                          a a       c   g 

>ptr-mir-548i-3 (-57.81)   [ptr-miR-548i:38-59]

--     g   -----         -----------cauccuc                        G A           a 
  agaug cuc     cgaaguuug                  uuagguuggugcAAAAGUAAUUGC G UUUUGCCauua a
  ||||| |||     |||||||||                  |||||||||||||||||||||||| | |||||||||||  
  ucuac gag     guuucaaac                  gauccgaucauguuuuuauuaacg c aaaacgguaau a
ac     a   ucccu         caucuuccucuuuucuau                        a a           g 

>ptr-mir-548i-4 (-49.75)   [ptr-miR-548i:39-60]

c     gc  -----         ----------caucc             -c           CG A           a 
 agaug  uc     cgaaguuug               uauuagguuggug  AAAAGUAAUUG  G UUUUGCCauua a
 |||||  ||     |||||||||               |||||||||||||  |||||||||||  | |||||||||||  
 ucuac  ag     guuucaaac               augauccgaccau  uuuuuauuaac  u aaaacgguaau a
c     ua  ucccu         cauuuccucuuuucu             uu           aa a           g 

>ptr-mir-548i-5 (-54.10)   [ptr-miR-548i:38-59]

--     g   -----         -----------caucc          g        U      G A           a 
  agaug cuc     cgaaguuug                uauuagguug ugcAAAAG AAUUGC G UUUUGCCauua a
  ||||| |||     |||||||||                |||||||||| |||||||| |||||| | |||||||||||  
  ucuac gag     guuucaaac                augauccgac auguuuuu uuaacg c aaaacgguaau a
ac     a   ucccu         caucuuccucuuuucu          g        c      a a           g 

>ptr-mir-548i-6 (-54.10)   [ptr-miR-548i:38-59]

--     g   -----         -----------caucc          g        U      G A           a 
  agaug cuc     cgaaguuug                uauuagguug ugcAAAAG AAUUGC G UUUUGCCauua a
  ||||| |||     |||||||||                |||||||||| |||||||| |||||| | |||||||||||  
  ucuac gag     guuucaaac                augauccgac auguuuuu uuaacg c aaaacgguaau a
ac     a   ucccu         caucuuccucuuuucu          g        c      a a           g 

>ptr-mir-548j (-51.60)   [ptr-miR-548j:29-48]

-    agc     -aa    ua                 U     C    a    ac 
 gggc   cagug   uagu  gcuggugcAAAAGUAAU GCGGU UUUG uauu  u
 ||||   |||||   ||||  ||||||||||||||||| ||||| |||| ||||   
 cuug   gucgc   auca  cgaccacguuuucauua cguca aaac guaa  u
a    --a     aag    uc                 -     a    g    cu 

>ptr-mir-548k (-46.00)   [ptr-miR-548k:31-52]

-uuuucucaa      c           u         C      A       uuac 
          guauug uguuagguugg gcAAAAGUA UUGCGG UUUUGCU    u
          |||||| ||||||||||| ||||||||| |||||| |||||||    u
          cguagu auaauccaacu cguuuuuau aacgcc aaaacgg    u
ucgguuaaaa      -           u         u      a       uaau 

>ptr-mir-548l (-42.00)   [ptr-miR-548l:15-36]

-uauua          A     U      G         aga 
      gguuggugcA AAGUA UUGCGG UUUUGUCau   a
      |||||||||| ||||| |||||| |||||||||    
      ccaaccacgu uucau gacguc aaaacggua   a
cguaaa          g     u      a         aug 

>ptr-mir-548n (-35.50)   [ptr-miR-548n:10-31]

-      a              U  A      cg  a 
 agguug ugCAAAAGUAAUUG GG UUUUGU  uu a
 |||||| |||||||||||||| || ||||||  ||  
 uccaac acguuuucauuaac cc aaaacg  aa a
a      c              c  c      au  a 

>ptr-mir-548p (-33.80)   [ptr-miR-548p:47-68]

-    g      a     u               uc   ac 
 auua guuggu uaaaa uaauugcaguuuuug  auu  u
 |||| |||||| ||||| |||||||||||||||  |||   
 uaau uaacca guUUU AUUGACGUCAAAAAC  Uaa  u
a    g      c     C               GA   cu 

>ptr-mir-549 (-53.20)   [ptr-miR-549:61-81]

agacaugcaacucaaga                                ucu 
                 auauauugagagcucauccauaguugucacug   c
                 ||||||||||||||||||||||||||||||||    
                 uauauaauUCUCGAGUAGGUAUCAACAGUgac   a
-----------ggaccc                                uag 

>ptr-mir-550-1 (-44.80)   [ptr-miR-550:22-44]

u  u    u c   cu   gcA                  G C     gu 
 ga gcuu g ugg  ggu   GUGCCUGAGGGAGUAAGA C Cuguu  u
 || |||| | |||  |||   |||||||||||||||||| | |||||  g
 cu ugaa c acc  cua   cacggacucccucauucu g gauag  u
-  c    - a   -u   ---                  - u     aa 

>ptr-mir-550-2 (-46.00)   [ptr-miR-550:21-43]

-  u    u c   cu   gcA                  G C     gu 
 ga gcuu g ugg  ggu   GUGCCUGAGGGAGUAAGA C Cuguu  u
 || |||| | |||  |||   |||||||||||||||||| | |||||  g
 cu ugaa c acc  cua   cacggacucccucauucu g gauag  u
u  c    - a   -u   ---                  - u     aa 

>ptr-mir-550-3 (-46.50)   [ptr-miR-550:21-43]

gaugcuuu   g c   u cA                  G C     gu 
        gcu g ugg g  GUGCCUGAGGGAGUAAGA C Cuguu  u
        ||| | ||| |  |||||||||||||||||| | |||||  g
        uga c acc c  cacggacucccucauucu g gauag  u
----ucuc   g a   u ua                  - u     aa 

>ptr-mir-551a (-56.70)   [ptr-miR-551a:61-81]

ggggacug  -   ug            c         ggg     ucuga 
        cc ggg  acccuggaaauc agagugggu   gccug     c
        || |||  |||||||||||| |||||||||   |||||      
        gg ccc  ugggACCUUUGG UCUCACCCA   CGgau     c
------aa  u   gu            U         --G     cuuug 

>ptr-mir-551b (-40.00)   [ptr-miR-551b:60-80]

gaugugc    c     ca          cg     - -aga    gug 
       ucuc uggcc  ugaaaucaag  ugggu g    ccug   c
       |||| |||||  ||||||||||  ||||| |    ||||    
       agag gucgg  ACUUUGGUUC  ACCCA C    gggc   a
----aua    c     aG          AU     G Ggaa    aag 

>ptr-mir-552 (-49.90)   [ptr-miR-552:61-81]

aaccauucaa                      uu ug        uu aa 
          auauaccacaguuuguuuaacc  u  ccuguugg  g  g
          ||||||||||||||||||||||  |  ||||||||  |  a
          uauauggugucaAACAGAUUGG  A  GGACAAcu  c  u
--------ca                      UC GU        uu cg 

>ptr-mir-553 (-25.00)   [ptr-miR-553:15-35]

uucaau    u                   G  UU 
      uuua uuuAAAACGGUGAGAUUUU UU  g
      |||| ||||||||||||||||||| ||   
      gagu agauuuugucgcucuaaaa ag  u
-----g    c                   g  uc 

>ptr-mir-554 (-33.00)   [ptr-miR-554:15-35]

------  u   uaaccuu      --------          --      a   g 
      cc gag       uGCUAG        UCCUGACUCA  GCCAGU cug u
      || |||       ||||||        ||||||||||  |||||| |||  
      gg cuc       acgguu        gggacugggu  ugguca gau c
ucuacg  u   --ucucu      uuauacuu          ag      -   u 

>ptr-mir-555 (-30.20)   [ptr-miR-555:61-81]

------     gaac     u  gg   ac      u  ga    u  gac 
      ggagu    ucaga gu  agc  uaccuu gu  gcag gu   c
      |||||    ||||| ||  |||  |||||| ||  |||| ||    
      ucuca    AGUCU CA  UCG  AUGGGA ca  uguc cg   c
aucuag     aaaU     C  AG   -A      -  gg    -  gaa 

>ptr-mir-556 (-37.44)   [ptr-miR-556:54-75]

--------a                     c  u          cuucau 
         uaguaauaagaaagaugagcu au guaauaugag      u
         ||||||||||||||||||||| || ||||||||||       
         aucauuauuuUUUCUACUCGA UA CAUUAUAcuu      u
acaacuucc                     U  C          uacaua 

>ptr-mir-557 (-33.00)   [ptr-miR-557:60-82]

gaaugggcaaaugaacaguaaa         cu       u   -   ---u   g 
                      uuuagaggc  ggggccc ccc ugc    gcu g
                      |||||||||  ||||||| ||| |||    ||| a
                      aaguuUCUG  UUCCGGG GGG ACG    uga g
------------agguggagga         --       U   C   UUUG   a 

>ptr-mir-558 (-42.10)   [ptr-miR-558:60-78]

ugugugu  g   g      u                  ua  cu     
       gu ugu uguggu auuuugguauaguagcuc  ga  cuau 
       || ||| |||||| ||||||||||||||||||  ||  ||| u
       cg gua acacca UAAAACCAUGUCGUCGAG  cu  gaua 
-----gu  g   a      -                  Uc  uu     

>ptr-mir-559 (-56.70)   [ptr-miR-559:15-35]

------                                      cu  u 
      cuccaguaacaucuUAAAGUAAAUAUGCACCAAAAuua  uu g
      ||||||||||||||||||||||||||||||||||||||  || g
      gaggucauuguaggauuucauuuauacgugguuuugau  aa u
acccuc                                      au  a 

>ptr-mir-561 (-55.90)   [ptr-miR-561:61-82]

uucauccaccag            ag                    agag 
            uccuccaggaac  caaggaucuuaaacuuugcc    c
            ||||||||||||  ||||||||||||||||||||    u
            aggggguccUUG  GUUCCUAGAAUUUGAAAcgg    a
-------uacca            AA                    aaac 

>ptr-mir-562 (-25.00)   [ptr-miR-562:60-79]

gugaa       -----   -  u     -   u       ua   u   u u 
     auugcua     ggu ca auggu cag cuacuuu  gag aau g g
     |||||||     ||| || ||||| ||| |||||||  ||| ||| | a
     uaacggu     uca GU UACCA GUC GAUGAAA  cuu uug c a
-----       guccc   C  U     U   -       --   u   u a 

>ptr-mir-564 (-51.10)   [ptr-miR-564:15-33]

----   -cg    g   cA           A  ----    aaca     g 
    ggg   gcgg ugc  GGCACGGUGUC GC    AGGC    uggcu a
    |||   |||| |||  ||||||||||| ||    ||||    |||||  
    ccc   cgcc gcg  cugugccgcgg cg    uccg    gccgg g
cagu   aug    a   -c           -  ggcc    --gg     a 

>ptr-mir-566 (-29.30)   [ptr-miR-566:15-33]

-----------------cuagg  u   gg      --C    GA     A  a u 
                      cg ggu  cGGGCG   CUGU  UCCCA Cu c c
                      || |||  ||||||   ||||  ||||| || |  
                      gc cca  guucgc   gacg  ggggu gg g a
cgagugacguuggaagcggagg  -   -a      uaa    ac     c  a g 

>ptr-mir-567 (-27.80)   [ptr-miR-567:15-37]

-------------------gauucuua   gacA              G      ---  u 
                           uag    GUAUGUUCUUCCAG ACAGAA   Ca u
                           |||    |||||||||||||| ||||||   || c
                           auc    cguacaagaagguc uguuuu   gu u
ucguuauugaaaaaaaaaaaaaaaaaa   aaaa              a      auc  u 

>ptr-mir-568 (-32.00)   [ptr-miR-568:16-35]

-g        -     u        A         ACuucc       a 
  auauacac uauau AUGUAUAA UGUAUACAC      uauaugu u
  |||||||| ||||| |||||||| |||||||||      |||||||  
  uaugugug auaug uacauauu auauaugug      auauaca c
ua        g     -        -         --auau       c 

>ptr-mir-569 (-23.19)   [ptr-miR-569:61-81]

g   uu    ga        g     --       gac   aucagaa 
 gua  guua  uuaauuuu uggga  cauuaac   agc       g
 |||  ||||  |||||||| |||||  |||||||   |||        
 uau  cagu  aauUGAAA GUCCU  GUAAUUG   ucg       c
u   uu    -g        G     AA       Auu   acuacaa 

>ptr-mir-572 (-54.90)   [ptr-miR-572:61-80]

gucgaggccguggcccggaaguggucg          g  -    -a     c 
                           gggccgcugc ga cgga  gggcg c
                           |||||||||| || ||||  |||||  
                           CCCGGUGGCG CU GCCU  uucgu u
------------gggcgcccggaccgA          G  C    Gc     g 

>ptr-mir-575 (-36.10)   [ptr-miR-575:60-78]

----------auuca  -    -   -         -  -  u   --        
               gc ccug cca cuggcuuau gu ca gac  cuugggc 
               || |||| ||| ||||||||| || || |||  |||||| u
               CG GGAC GGU GACCGAGua ca gu cug  ggacuca 
cucaacucaccguga  A    A   U         a  c  -   uc        

>ptr-mir-576 (-44.00)   [ptr-miR-576:54-75]

---------acaauccaac              c            g   ua 
                   gaggauucuaauuu uccacaucuuug uaa  a
                   |||||||||||||| |||||||||||| |||   
                   cucCUAAGGUUAAA AGGUGUAGAAac guu  g
accaauauugguuaacuua              A            g   uu 

>ptr-mir-577 (-48.52)   [ptr-miR-577:15-35]

------------                      A      U     augaa 
            gggggagugaagagUAGAUAAA UAUUGG ACCUG     u
            |||||||||||||||||||||| |||||| |||||     c
            ccccuuuacuucucgucuauuu auaacu uggac     u
cauucaucuaua                      c      u     cggag 

>ptr-mir-579 (-49.30)   [ptr-miR-579:61-83]

auauuag   a                                cg     aa 
       guu augcaaaaguaaucgcgguuugugccagauga  auuug  u
       ||| ||||||||||||||||||||||||||||||||  |||||   
       caa uacguuuuuaUUAGCGCCAAAUAUGGUUUACU  Uaaau  u
-------   c                                --     aa 

>ptr-mir-580 (-48.40)   [ptr-miR-580:60-81]

uaa      ca                      ga          uaa 
   aauuuc  auuggaaccuaaugauucauca  cucagauauu   g
   ||||||  ||||||||||||||||||||||  ||||||||||   u
   uuaaag  ugaccuuGGAUUACUAAGUAGU  GAGUUuauga   u
---      ac                      AA          caa 

>ptr-mir-581 (-37.12)   [ptr-miR-581:15-35]

--------uua    a          -       C       G   uuuua 
           ugug agguauUCUU GUGUUCU UAGAUCA Ugc     g
           |||| |||||||||| ||||||| ||||||| |||     g
           acac uccauaagaa cacaaga aucuagu gug     a
cguccaccaag    a          a       a       -   uuuaa 

>ptr-mir-582 (-44.04)   [ptr-miR-582:16-38]

-----------uc  ug       auUA                   UAaucu 
             ug  cucuuug    CAGUUGUUCAACCAGUUAC      a
             ||  |||||||    |||||||||||||||||||       
             ac  gggaaac    gucaacaaguuggucaaug      a
uuacaaagaugaa  gu       ccaa                   uuaauc 

>ptr-mir-583 (-39.90)   [ptr-miR-583:16-36]

aacucacacauuaa         A        U      -     
              cCAAAGAGG AGGUCCCA UACugc aggg 
              ||||||||| |||||||| |||||| ||| a
              gguuucucc uccagggu augacg uucu 
--------------         a        c      a     

>ptr-mir-584 (-56.00)   [ptr-miR-584:16-37]

------     u         UUA     U            G a   ug 
      uaggg gaccagcca   UGGUU GCCUGGGACUGA g auu  c
      ||||| |||||||||   ||||| |||||||||||| | |||   
      guccc cugguuggu   accaa cggaccuugacu u uag  u
aacgaa     u         cgg     c            g a   gg 

>ptr-mir-586 (-45.30)   [ptr-miR-586:16-38]

---------au     --                           U    au 
           ggggu  aaaaccauUAUGCAUUGUAUUUUUAGG CCCa  a
           |||||  ||||||||||||||||||||||||||| ||||  c
           uuuca  uuuugguaauacguaacauaaaaaucc gggu  g
auucuucuauu     cu                           c    gu 

>ptr-mir-587 (-46.42)   [ptr-miR-587:15-35]

ucc    -cacccu        A                gcu    ga 
   uaug       cUUUCCAU GGUGAUGAGUCACagg   cagg  a
   ||||       |||||||| ||||||||||||||||   ||||  u
   auac       gaaaggug ccacuacucagugucc   gucu  g
--u    ccuaccc        a                -ac    gu 

>ptr-mir-588 (-42.90)   [ptr-miR-588:15-35]

g       a       -     CAA     U       uau 
 cuuaggu ccaauUU GGCCA   UGGGU AGAACac   u
 ||||||| ||||||| |||||   ||||| |||||||   c
 gaauccg gguuaaa ccggu   accca ucuugug   c
-       -       a     acc     u       uua 

>ptr-mir-590 (-31.80)   [ptr-miR-590:55-75]

---------agc        a  g       u       g     ua   u 
            cagucaga au agcuuau cauaaaa ugcag  ugg g
            |||||||| || ||||||| ||||||| |||||  ||| a
            guuagucu UG UCGAAUA GUAUUUU AUguc  acu a
acgacguacaaa        c  A       U       A     ua   g 

>ptr-mir-591 (-26.40)   [ptr-miR-591:16-35]

---ucuuaucaa         -   U  -    U  UUG    ---a  g 
            ugaggcAGA CCA GG GUUC CA   Uaau    gu u
            ||||||||| ||| || |||| ||   ||||    || a
            acucugucu ggu cc cagg gu   auug    ua g
uuagucaucuaa         c   c  u    u  -ca    guug  a 

>ptr-mir-592 (-38.30)   [ptr-miR-592:16-37]

--------ua     c     ca        A    C        gu    a 
          uuaug cauga  UUGUGUCA UAUG GAUGAUGU  ugug u
          ||||| |||||  |||||||| |||| ||||||||  ||||  
          aaugc guacu  aacgcagu gugc cuacugcg  acac g
aacacugcag     a     ac        g    a        --    g 

>ptr-mir-593 (-43.31)   [ptr-miR-593:78-96]

--------      aaucugu    c  c    a     ug   --a  -     uc 
        ccccag       cagg ac agcc ggcau  cuc   gc cccuu  c
        ||||||       |||| || |||| |||||  |||   || |||||  c
        GGGGUC       GUCU UG uugg ucgug  gag   cg ggggg  u
uccUCUUU      -------    C  U    g     gu   gaa  a     uc 

>ptr-mir-595 (-33.60)   [ptr-miR-595:61-81]

ac  --aag   g  c  auuua      --       -    g ag   u 
  gg     ccu ca gc     acacca  gcacgcu caac u  ucu g
  ||     ||| || ||     ||||||  ||||||| |||| |  ||| u
  cc     gga gU UG     UGUGGU  CGUGUGA Guug a  agg a
gu  gcgaa   g  C  -----      GC       A    g ca   a 

>ptr-mir-597 (-36.50)   [ptr-miR-597:15-36]

---acu          -----g  U     UC  U         gaag   gu 
      uacucuacgu      UG GUCAC  GA GACCACUGU    aca  a
      ||||||||||      || |||||  || |||||||||    |||   
      augagaugua      ac cggug  cu uuggugaca    ugu  a
cugguc          augcga  u     uu  c         ----   aa 

>ptr-mir-598 (-38.30)   [ptr-miR-598:61-82]

gcuugaugaugcugcugaugcu         cc     gu  g   uggaa 
                      ggcggugau  cgaug  gu agc     a
                      |||||||||  |||||  || |||      
                      CUGCUACUG  GCUAC  CA Ucg     u
-------agccuacuacuacuA         UU     UG  -   ugggg 

>ptr-mir-599 (-39.00)   [ptr-miR-599:61-80]

aaagacaugcu     c     --                 gg     -   u 
           gucca agugu  guuugauaagcugacau  gacag gga u
           ||||| |||||  |||||||||||||||||  ||||| ||| c
           uaggu ucaua  CAAACUAUUUGACUGUG  UUGuc cuu u
---------ag     -     cc                 --     a   u 

>ptr-mir-600 (-40.20)   [ptr-miR-600:61-83]

aagucacgu  u u    cca    cau  g               c  gcagu 
         gc g ggcu   gcuu   ag aaggcucuugucugu ag     g
         || | ||||   ||||   || ||||||||||||||| ||      
         cg c ccga   cgga   UC UUCCGAGAACAGACA UC     g
--------c  u -    --c    --C  G               U  Auuga 

>ptr-mir-601 (-25.40)   [ptr-miR-601:16-37]

ugcaugaguu     --U  U  --      G    A  -   ca 
          caucu   GG CU  AGGAUU UUGG GG AGu  g
          |||||   || ||  |||||| |||| || |||  a
          guggg   cc ga  uccuag gacc cc uca  a
---------g     uuu  u  ag      g    -  a   aa 

>ptr-mir-605 (-61.80)   [ptr-miR-605:15-37]

c                                  CU  gg 
 ccuagcuugguucUAAAUCCCAUGGUGCCUUCUC  ug  a
 ||||||||||||||||||||||||||||||||||  ||  a
 ggauugaaccaagauuuaggguaucacggaagag  ac  a
-                                  --  aa 

>ptr-mir-609 (-56.90)   [ptr-miR-609:16-35]

--ug   g                 U            gu    aaug 
    cuc gcuguuccuAGGGUGUU CUCUCAUCUCUg  cuau    g
    ||| ||||||||||||||||| ||||||||||||  ||||     
    gag cgacaaggaucccacaa gggaguagagau  gaua    g
caag   a                 c            --    aauu 

>ptr-mir-610 (-55.49)   [ptr-miR-610:15-35]

--------      g     g              UGCUGGGAcacauugagccaaaugucccgaaunnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaug 
        cuauuu ucuua gUGAGCUAAAUGUG                                                                   g
        |||||| ||||| ||||||||||||||                                                                    
        gguaaa agaau cacucgauuuacac                                                                   c
ugaucuca      a     a              uaggggaaugggguuuucguauacauauuaagguuucauauaaacgacccucacauuuuuaacucuu 

>ptr-mir-612 (-49.70)   [ptr-miR-612:15-39]

-------  -ca     --a  c  CU   C          -        -a  a 
       cc   ucugg   cc uG  GGG AGGGCUUCUG AGCUCCUU  gc c
       ||   |||||   || ||  ||| |||||||||| ||||||||  ||  
       gg   ggacc   gg ac  ccc ucccggggac ucggggag  cg u
acucuca  aca     gac  u  cu   -          c        ga  a 

>ptr-mir-613 (-25.72)   [ptr-miR-613:59-78]

----------      -  uuuccaagugu        cc      ua    cuua 
          ugagug ca           gaagggac  uuccug  gugu    u
          |||||| ||           ||||||||  ||||||  ||||     
          acucaC GU           CUUCCUUG  AAGGAu  caua    a
auuuccacau      C  ---------UU        -U      ga    acau 

>ptr-mir-614 (-38.70)   [ptr-miR-614:53-75]

cuaagaaac     gg   -   ga     -           ---   cc 
         gcagu  ucu cug  gucug caggagcaggc   cag  c
         |||||  ||| |||  ||||| |||||||||||   |||  u
         cgucg  gga gac  UGGAC GUUCUUGUCCG   Guc  g
---------     uu   a   GG     C           CAA   ac 

>ptr-mir-615 (-58.80)   [ptr-miR-615:61-82]

cuc   ag   c          -uc     u        cu    g ug 
   ggg  ggg gggagggggg   cccgg gcucggau  cgag g  c
   |||  ||| ||||||||||   ||||| ||||||||  |||| |  u
   ccc  ccc cccUUCUCCC   GGGUC CGAGCCUg  gcuu u  u
-cc   aa   -          UCU     -        --    g ua 

>ptr-mir-616 (-54.80)   [ptr-miR-616:55-76]

--------     a       ca      a                a  aca 
        uaggu auuccuc  cucaaa cccuccagugacuucc ug   u
        ||||| |||||||  |||||| |||||||||||||||| ||    
        gucca uaaggaG  GAGUUU GGGAGGUUACUGAagg ac   g
aaaauuuu     g       AC      -                -  aaa 

>ptr-mir-617 (-50.10)   [ptr-miR-617:16-37]

--------------c    u         A     C              Ccau 
               auca aaggagccu GACUU CCAUUUGAAGGUGG    u
               |||| ||||||||| ||||| ||||||||||||||     
               uagu uuccucgga cugaa gguaaacuuccacc    u
gaggaguaaauaacu    c         c     u              aucc 

>ptr-mir-618 (-38.10)   [ptr-miR-618:16-38]

--cu  ug       ccA      A      C        guaau   -  a 
    cu  uucacag   AACUCU CUUGUC UUCUGAGU     uac gu c
    ||  |||||||   |||||| |||||| ||||||||     ||| ||  
    ga  agguguc   uuggga gaacag aggacucg     aug cg a
gucu  gu       cca      c      -        -----   a  u 

>ptr-mir-619 (-32.80)   [ptr-miR-619:61-84]

c  cc  -cu   ccucccaaaa       au          ag   --c     u 
 gc  ac   cag          ugcuggg  uacaggcaug  cca   cgugg c
 ||  ||   |||          |||||||  ||||||||||  |||   |||||  
 cg  ug   guc          aUGACCC  GUGUUUGUAC  GGU   Guacc g
a  uu  acu   ----------       --          -A   CCA     a 

>ptr-mir-621 (-33.90)   [ptr-miR-621:60-80]

agauuga   ---      u   u        g  c     u   cug   aa 
       gga   aggggc gag gguaggug ug ugcug gcu   aug  g
       |||   |||||| ||| |||||||| || ||||| |||   |||   
       ccu   ucucug uuU CCAUUCGC AC ACGAU CGG   uac  a
-------   ggg      u   -        G  A     -   -ug   cc 

>ptr-mir-622 (-32.70)   [ptr-miR-622:60-80]

---gagaagc   aca   a  gg             -aa  -  g   c 
          ugg   agu uu  ucucagcagauug   ga ga cac a
          |||   ||| ||  |||||||||||||   || || |||  
          auc   uCG GG  GGAGUCGUCUGAC   cu cu gug c
ucgcaguaga   --g   A  UU             Aca  a  g   a 

>ptr-mir-624 (-56.90)   [ptr-miR-624:54-74]

----------                                   -- ag  g 
          aaugcuguuucaagguaguaccaguaccuuguguu  c  ug a
          |||||||||||||||||||||||||||||||||||  |  ||  
          uuacgauagaguUCCAUUAUGGUUAUGGAACACaa  g  ac a
ugaauccaca                                   au ga  c 

>ptr-mir-626 (-22.00)   [ptr-miR-626:60-78]

cugauauauuu     auu     gc      g        u   au    au 
           gucuu   ugaga  ugagga uauuuuua gca  cuga  g
           |||||   |||||  |||||| |||||||| |||  ||||   
           cggaa   auuuu  acUUCU GUAAAAGU UGU  GAcu  a
---------uu     ---     -a      -        C   -C    cu 

>ptr-mir-627 (-56.50)   [ptr-miR-627:16-37]

--------ua       c              U              ug u 
          cuuauua ugguaGUGAGUCUC AAGAAAAGAGGAgg  g u
          ||||||| |||||||||||||| ||||||||||||||  |  
          gaauaau accaucacucagag uucuuuucuccucc  u g
ucaucauaaa       a              u              uu u 

>ptr-mir-628 (-35.80)   [ptr-miR-628:61-81]

auagcugu  u   a      ca  -   a   a             aaaa 
        ug guc cuuccu  ug cug cau uuuacuagagggu    u
        || ||| ||||||  || ||| ||| |||||||||||||     
        ac cgg gaaggg  GC GAC GUG GAAUGAUCUucca    u
--------  u   -      aA  U   G   A             auaa 

>ptr-mir-630 (-27.00)   [ptr-miR-630:60-81]

acuuaacaucau       -     -   --c     uu         g 
            acuaccu cuuug uau   auauu  guuauucug u
            ||||||| ||||| |||   |||||  |||||||||  
            ugaUGGA GGGAC AUG   UAUGA  caguaagac c
uauaucaauucu       A     C   UCU     uc         a 

>ptr-mir-632 (-44.90)   [ptr-miR-632:61-79]

-c  cu  u     a  g  ug            g  g    cga      
  gc  cc accgc gu cu  acgggaggcgga cg ggaa   ggccg 
  ||  || ||||| || ||  |||||||||||| || ||||   |||| u
  cg  gg uggcg cA GG  UGUCCUUCGUCU GU uuuu   ccggc 
gc  au  -     -  G  --            -  G    --a      

>ptr-mir-633 (-44.50)   [ptr-miR-633:61-83]

--a    ucu    cucu    cuu                        aaa 
   ccuc   uagc    guuu   uauugugguagauacuauuagccu   a
   ||||   ||||    ||||   ||||||||||||||||||||||||   u
   ggag   guug    uAAA   AUAACACCAUCUAUGAUAAUcgga   g
aua    --u    ---u    ---                        aga 

>ptr-mir-634 (-28.50)   [ptr-miR-634:60-81]

aacccacacc    c    ug  ca  g          -c     -   a    
          acug auuu  gc  uc aggguugggg  uuggu guc ugc 
          |||| ||||  ||  || ||||||||||  ||||| ||| || c
          ugau uagg  cg  AG UUUCAACCCC  GACCA uag acc 
--------uc    -    ua  aC  G          AC     A   a    

>ptr-mir-635 (-32.10)   [ptr-miR-635:16-38]

caga a      gc  CU       U         UCC      cuuu   a 
    g ggagcu  cA  UGGGCAC GAAACAAUG   auuagg    guu u
    | ||||||  ||  ||||||| |||||||||   ||||||    ||| g
    c cuucga  gu  accugug uuuuguuac   uagucc    caa g
--aa -      --  -u       -         ---      ucuu   a 

>ptr-mir-637 (-32.40)   [ptr-miR-637:61-84]

-------  -  ua  gu  -u     --c   u     c   --   u  -  uc 
       ug gc  ag  gu  ggcuc   ggc cccca ugc  agu ac cc  c
       || ||  ||  ||  |||||   ||| ||||| |||  ||| || ||  c
       ac cg  uc  CG  UCGGG   UCG GGGGU Acg  uca ug gg  c
uucauag  a  --  UG  UC     CUU   -     C   ag   u  c  cu 

>ptr-mir-640 (-32.10)   [ptr-miR-640:60-80]

uga   u      ------------       aa     gaca   ----     c 
   ccc gggcaa            guuccug  gauca    cau    cagau c
   ||| ||||||            |||||||  |||||    |||    ||||| c
   ggg uccguu            CAAGGAC  CUAGU    gua    gucua u
--g   u      gacaUCUCCGUC       --     Acgg   aaau     u 

>ptr-mir-641 (-57.00)   [ptr-miR-641:16-37]

u      a                    AG       c    ccuc  u 
 ggguga aggaaggAAAGACAUAGGAU  AGUCACC cugu    ug c
 |||||| ||||||||||||||||||||  ||||||| ||||    || c
 cccauu uccuuccuuucuguguccug  ucagugg gaua    ac u
c      c                    --       a    -ucc  c 

>ptr-mir-642 (-65.40)   [ptr-miR-642:15-36]

-------------u             G                      ggu 
              cugaguugggagg UCCCUCUCCAAAUGUGUCUUGg   g
              ||||||||||||| ||||||||||||||||||||||   g
              ggcucaacccucc agggagagguuuacacagaacu   g
uuacuaccgucucc             a                      agg 

>ptr-mir-643 (-44.60)   [ptr-miR-643:60-81]

ccaaguga      u   g            a         --g    c 
        uauuca ugu uaccugagcuag auacaagug   uugg g
        |||||| ||| |||||||||||| |||||||||   |||| u
        guaagu aua AUGGACUCGAUC UAUGUUCAc   gacu c
---aaaaa      u   G            G         aga    u 

>ptr-mir-645 (-42.90)   [ptr-miR-645:60-78]

aguuccuaac    c    ac             u   cu         
          aggc ucag  caguaccggucug ggc  ggggguug 
          |||| ||||  ||||||||||||| |||  ||||||| a
          uucg AGUC  GUCAUGGUCGGAU Ucg  uccccagg 
gagagaaaaa    u    --             C   --         

>ptr-mir-646 (-33.80)   [ptr-miR-646:60-78]

au  -g      ---   ag     u    acacc      -  a    ug 
  ca  gagucu   gcc  uggag cagc     ugcuuu uc ccug  a
  ||  ||||||   |||  ||||| ||||     |||||| || ||||   
  gu  cucgga   CGG  GUCUC GUCG     ACGAAg ag ggac  u
-g  ga      cuc   -A     C    -----      g  a    cc 

>ptr-mir-649 (-22.50)   [ptr-miR-649:61-82]

   cu     aauac  u        u      uu    gaaa     c 
ggc  agaca     ug auuuuuga caauau  gguu    aauau u
|||  |||||     || |||||||| ||||||  ||||    |||||  
ucg  uuugu     ac UGAGAACU GUUGUG  CCAA    uuaug a
   -u     --guc  C        U      -U    Auga     u 

>ptr-mir-650 (-33.00)   [ptr-miR-650:15-35]

------a     ----------     cuu     --    C     CA  A   ca 
       gugcu          ggggu   AGGAG  GCAG GCUCU  GG Cgu  c
       |||||          |||||   |||||  |||| |||||  || |||  c
       cacgg          uccca   uccuc  cguc cggga  cc gua  a
uagugga     gacucacucc     --c     cu    u     --  g   cc 

>ptr-mir-652 (-55.20)   [ptr-miR-652:60-80]

cgaau  cua                  gagag           ca  g 
     gg   ugcacugcacaacccuag     ggugccauuca  ua a
     ||   ||||||||||||||||||     |||||||||||  || c
     cc   acgugacGUGUUGGGAUC     CCGCGGUAAgu  au u
cacau  aac                  ----A           ua  a 

>ptr-mir-653 (-32.82)   [ptr-miR-653:13-33]

----------u      cuu              U     C     cagcu 
           ucauuc   caGUGUUGAAACAA CUCUA UGaac     u
           ||||||   |||||||||||||| ||||| |||||     c
           aguaag   guuauaacuuuguu gaggu acuug     a
gaagguagaau      aac              u     c     aacaa 

>ptr-mir-654 (-27.10)   [ptr-miR-654:50-71]

-   aagugg    a      g c     a      - -  a 
 ggu      aaag uggugg c gcaga caugug c ug g
 |||      |||| |||||| | ||||| |||||| | ||  
 ccg      uUUC ACUACC G CGUCU GUAUac g gc u
c   --aaga    C      A U     -      c u  u 

>ptr-mir-656 (-23.70)   [ptr-miR-656:42-62]

-----------u    u      c     ag       cuu  u 
            gaaa agguug cugug  guguuca   uc a
            |||| |||||| |||||  |||||||   || u
            cuuU UCCAAC GACAU  UAUAAgu   ag a
cuaagcuauagc    C      U     AU       ---  u 

>ptr-mir-657 (-46.20)   [ptr-miR-657:61-83]

guguaguagagcua        --   u        -a c u     g u        
              ggaggaga  ggg ccuggaga  g g ggacc g ccgggag 
              ||||||||  ||| ||||||||  | | ||||| | |||||| g
              ucuccucu  ccc GGAUCUCU  C C CUUGG C GGccuug 
--------------        ua   c        CC A U     A -        

>ptr-mir-658 (-41.70)   [ptr-miR-658:61-84]

g    g  g   --      -      --cgg   gc     --agc   c  a 
 cucg uu ccg  ugguug cgggcc     ccc  ccgcc     ucg ug c
 |||| || |||  |||||| ||||||     |||  |||||     ||| ||  
 gagc aa ggu  gccGGU GCCUGG     GGG  GGCGG     agc ac a
-    -  g   ug      U      AUGAA   -A     gacuc   -  g 

>ptr-mir-660 (-33.10)   [ptr-miR-660:15-36]

-----------u    c      -caUAC    U      C    U   gaau 
            gcuc uucucc      CCAU GCAUAU GGAG UGu    u
            |||| ||||||      |||| |||||| |||| |||    c
            cgag gggagg      ggua cgugug ccuc aca    u
gugcuacuguuc    u      acauua    -      u    c   aaac 

>ptr-mir-663a (-45.60)   [ptr-miR-663a:15-36]

ccuu    - auc     -C  G   -        --     c   ug 
    ccgg c   ccAGG  GG GCG CCGCGGGA  CCGCc ucg  u
    |||| |   |||||  || ||| ||||||||  ||||| |||   
    ggcc g   ggucc  uu ugc ggcgcccu  ggugg ggu  c
uacc    c -gu     uu  g   c        ag     c   gu 

>ptr-mir-663b (-48.50)   [ptr-miR-663b:90-111]

ggu   ga    -  u    - auc     ----  -      ugu   ----      - ucg 
   gcc  gggc cg ccgg c   cuagg    cg ggucgc   ggg    accgcc c   u
   |||  |||| || |||| |   |||||    || ||||||   |||    |||||| |    
   uGG  UCCG GC GGCC G   GGucc    gu ccggug   ccu    uggcgg g   g
-uu   AG    U  C    C -GU     uuuu  g      --u   aggg      u ucu 

>ptr-mir-664 (-24.40)   [ptr-miR-664:49-71]

--gaa    gaaacu    a    aaa   u         ac 
     cauu      ggcu ggga   uga uggauagaa  u
     ||||      |||| ||||   ||| |||||||||  a
     guaa      CCGA CCCU   AUU ACUUAUcuu  u
aaaaa    -aACAU    C    ---   U         au 

>ptr-mir-665 (-38.70)   [ptr-miR-665:42-61]

-- u    -          c      -acc  g  c 
  c ccug gaggggucuc gccucu    ca ga u
  | |||| |||||||||| ||||||    || || c
  g ggac cUCCCCGGAG CGGAGG    gu cu u
cg c    a          U      ACCA  a  u 

>ptr-mir-668 (-30.50)   [ptr-miR-668:42-64]

gua    c   ---        g         a 
   agug gcc   ucggguga caugcacuu a
   |||| |||   |||||||| ||||||||| u
   UCAC CGG   GGCUCACU GUauguggg g
cCA    C   CUC        -         u 

>ptr-mir-671 (-65.80)   [ptr-miR-671:67-87]

-caggu aa     ----a    a        a   a      ga           -u   g 
      g  cuggc     ggcc ggaagagg gga gcccug  ggggcuggagg  gau g
      |  |||||     |||| |||||||| ||| ||||||  |||||||||||  |||  
      c  gaccg     ccgg cuuucuCC CCU CGGGAC  UCUUGGCCUcc  uug a
cguggu gg     agaug    g        A   -      --           uu   u 

>ptr-mir-708 (-44.10)   [ptr-miR-708:11-33]

aa        A           A     C  GGg  aa   ac 
  cugcccuc AGGAGCUUACA UCUAG UG   gu  aug  u
  |||||||| ||||||||||| ||||| ||   ||  |||  u
  gacgggag ucuucgagugu agauc ac   ca  uac  g
gg        a           c     a  --a  ag   ac 

>ptr-mir-7-1 (-48.00)   [ptr-miR-7:24-46]

-u    u  -      a  u        A     A       U      --     a 
  ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUGUu  uuuag u
  |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
  aucu cg accgga ca gguauacc ucuga cacuaaa caacag  aaauc a
ac    c  u      -  c        g     -       -      cu     a 

>ptr-mir-7-2 (-46.90)   [ptr-miR-7:31-53]

uggauacaga    acc       c    cU  A     A U     U       ucuua 
          gcgg   ggcuggc ccau  GG AGACU G GAUUU GUUGUug     c
          ||||   ||||||| ||||  || ||||| | ||||| |||||||      
          cgcu   ccgaccg ggua  cc ucuga c cuaaa caacaac     u
---------a    --a       u    au  a     c -     -       ucgcg 

>ptr-mir-720 (-33.10)   [ptr-miR-720:26-42]

------------------cgg      cccg       ------         GCUG    - UC A 
                     aucuca    guggugu      uaauaUCUC    GGGC C  C a
                     ||||||    |||||||      |||||||||    |||| |  | a
                     uagagu    caccaca      auugugggg    cccg g  g a
gauuauuuccugagaauuaag      uuca       aaagag         ---a    u uu u 

>ptr-mir-744 (-38.90)   [ptr-miR-744:11-32]

-     c     GC    C   -   U       gucuuacugaagguu 
 uuggg aaggU  GGGG UAG GGC AACAGCA               u
 ||||| |||||  |||| ||| ||| |||||||               c
 ggcuc uucca  cucc auc ccg uugucgu               c
u     a     -a    a   a   -       acacgcaccaaaggu 

>ptr-mir-758 (-29.40)   [ptr-miR-758:51-72]

--cc       a    --a    u      aga   c   - uuu 
    uggauac ugag   uggu gaccag   gca acg c   a
    ||||||| ||||   |||| ||||||   ||| ||| |   u
    aucuaug acuc   AUCA CUGGUC   UGU Ugc g   u
cgua       -    CCA    C      CAG   U   c ugu 

>ptr-mir-760 (-41.60)   [ptr-miR-760:48-67]

---   cg    c    u   ucca        c    acc 
   gcg  ucgc cccc cag    ccagagcc ggau   u
   |||  |||| |||| |||    |||||||| ||||   c
   cgu  agcg GGGG GUC    GGUCUCGG Cuua   a
caa   aa    A    U   --UG        -    aag 

>ptr-mir-765 (-32.20)   [ptr-miR-765:69-89]

u      gcug    a  ug  --g    guag  agc       ------        caa 
 uuaggc    auga ag  ga   uuca    ac   ccuuuuc      aagcccua   g
 ||||||    |||| ||  ||   ||||    ||   |||||||      ||||||||    
 aguccg    ugcu uu  cu   aaGU    UG   GGAAGAG      uuuggggu   a
-      --ag    c  gu  agg    --AG  GAA       GAGGUc        caa 

>ptr-mir-766 (-49.70)   [ptr-miR-766:65-86]

gca    cag   -cug    u       ag    aau   u     ucuu   uuu 
   uccu   gac    ggcu ggguggu  gagg   ugg gcugg    uca   u
   ||||   |||    |||| |||||||  ||||   ||| |||||    |||   g
   agga   cug    ccga cccacCG  CUCC   ACC CGACC    Agu   g
--g    -ua   uuaa    c       -A    GAC   C     --UC   uua 

>ptr-mir-770 (-56.20)   [ptr-miR-770:19-41]

-     -c     cc   c              GUCA     A      cu 
 ggagc  accuu  gag cUCCAGUACCACGU    GGGCC caugag  g
 |||||  |||||  ||| ||||||||||||||    ||||| ||||||   
 ucucg  ugggg  cuc ggggucguggugua    uccgg gugcuc  g
u     uc     -a   c              ---g     -      cg 

>ptr-mir-802 (-35.00)   [ptr-miR-802:17-39]

----uu      u     g C   A          A       -  cc 
      cuguua uugca u AGU ACAAAGAUUC UCCUUGU gu  a
      |||||| ||||| | ||| |||||||||| ||||||| ||  u
      gauaau aaugu a uca uguuucuaag aggaaca cg  c
cagguc      u     g c   c          -       a  ua 

>ptr-mir-873 (-31.10)   [ptr-miR-873:11-31]

-   u ca   G A      UG G        a  ga 
 gug g  uuu C GGAACU  U AGUCUCCU uu  a
 ||| |  ||| | ||||||  | |||||||| ||  a
 cac c  aag g ccuuga  a ucagagga aa  a
a   c ac   g c      gu g        c  gu 

>ptr-mir-874 (-37.20)   [ptr-miR-874:47-68]

-      cug   c   a  ca        a   -a a 
 uuagcc   cgg ccc cg  ccagggua gag  g c
 ||||||   ||| ||| ||  |||||||| |||  | u
 ggucgg   GCC GGG GC  GGUCCCGU cuu  c c
g      ucA   A   A  CC        C   cg u 

>ptr-mir-875 (-32.20)   [ptr-miR-875:11-32]

-      gu  UAU        U  A       uucu 
 uuagug  ac   ACCUCAGU UU UCAGGUG    u
 ||||||  ||   |||||||| || |||||||     
 agucac  ug   uggaguca aa gguccac    a
a      uc  ugu        u  a       uaaa 

>ptr-mir-876 (-41.00)   [ptr-miR-876:50-71]

u    ug         u                aucuaa  u 
 gaag  cuguggauu cuuugugaaucaccau      gc a
 ||||  ||||||||| ||||||||||||||||      ||  
 cuuc  gauACUUAA GAAACAUUUGGUGGUg      ug a
-    gu         U                -----g  u 

>ptr-mir-885 (-44.50)   [ptr-miR-885:43-64]

-   ca    c           a  -         cu 
 ccg  cucu uccauuacacu cc cugccucuu  c
 |||  |||| ||||||||||| || |||||||||   
 ggc  gagA AGGUGAUGUGG GG GACGGAgag  c
g   ac    U           -  C         ua 

>ptr-mir-886 (-35.10)   [ptr-miR-886:90-110]

-cacuccuaccc       aguu   u aa    -  a -cu     u  - ------    uuu 
            gggucgg    agc c  gcgg uu c   ccuca gc c      ggac   c
            |||||||    ||| |  |||| || |   ||||| || |      ||||   u
            CCCAGUC    UCG G  CGCc ag g   ggggu cg g      ccug   a
auaacguauuUU       --AU   U GG    c  a cuu     -  u ucucua    ucu 

>ptr-mir-887 (-37.00)   [ptr-miR-887:47-68]

---      u        --  -      ag    ug auu 
   ugcaga ccuuggga  gc ccuguu  acuc  g   u
   |||||| ||||||||  || ||||||  ||||  |   u
   acguuu GGAGCCCU  CG GGGCAA  UGag  u   a
gac      c        AC  C      -G    gu cac 

>ptr-mir-889 (-23.50)   [ptr-miR-889:48-68]

---    u   g     c      uagua     -  uau 
   ugcu aaa aaugg uguccg     ugguc uc   a
   |||| ||| ||||| ||||||     ||||| ||   u
   auga uuU UUACC ACAGGC     AUUag ag   u
ccu    u   G     A      -UAUA     u  uau 

>ptr-mir-890 (-29.10)   [ptr-miR-890:11-31]

-   ag   c     UG      C UC      uuag 
 gga  ugc cUACU  GAAAGG A  AGUUGc    a
 |||  ||| |||||  |||||| |  ||||||    u
 ucu  aug gauga  cuuucc u  ucaaug    u
u   ga   a     gu      c ua      uaca 

>ptr-mir-891a (-32.52)   [ptr-miR-891a:11-28]

-ccuua     UG        C  A        uucag 
      auccu  CAACGAAC UG GCCAuuga     u
      |||||  |||||||| || ||||||||     a
      ugggg  guuguuug ac cggugacu     a
gaaaac     gu        u  a        cauaa 

>ptr-mir-891b (-26.72)   [ptr-miR-891b:11-32]

-ccuua     UG    UU  C  A        uucag 
      auccu  CAAC  AC UG GUCAUUGA     u
      |||||  ||||  || || ||||||||     a
      uggga  guug  ug ac cgguaacu     a
gaaaac     gu    uu  u  a        uacaa 

>ptr-mir-892a (-28.10)   [ptr-miR-892a:44-64]

cagu         -----       u  -    a  uuac 
    gccuuacuc     agaaagg gc cagu ac    a
    |||||||||     ||||||| || |||| ||    c
    cggaaugaG     UCUUUCC UG GUCA ug    u
---u         AUGCG       -  U    C  uaca 

>ptr-mir-9-1 (-40.30)   [ptr-miR-9:16-38]

c       guug   UC               G      u  ug 
 gggguug    uua  UUUGGUUAUCUAGCU UAUGAg gg  u
 |||||||    |||  ||||||||||||||| |||||| ||  g
 ccccaau    aau  aagccaauagaucga auacuu cu  g
-       -aaa   ga               a      -  ga 

>ptr-mir-920 (-22.00)   [ptr-miR-920:51-70]

--  ag     -      aaga    -aa    - agg 
  gu  uuguu cuacag    ccug   ugug c   a
  ||  ||||| ||||||    ||||   |||| |   g
  ca  GACGA GGUGUC    GGac   acac g   c
ua  AU     A      GAGG    cuc    a aau 

>ptr-mir-922 (-21.20)   [ptr-miR-922:57-75]

-----------aug  -    uc    ucccuguccuggacu 
              gc guuu  ccuc               g
              || ||||  ||||               g
              CG CGaa  ggag               g
AUCAGGAUAAGAGA  A    ga    ccccgugucagacug 

>ptr-mir-924 (-12.30)   [ptr-miR-924:4-23]

-aa    G   ----  U    -    G 
   uAGA UCU    UG GAUG UCUU C
   |||| |||    || |||| |||| u
   aucu aga    ac cuac ggga u
aac    g   ucca  -    c    a 

>ptr-mir-933 (-34.70)   [ptr-miR-933:47-68]

acu     caguuc       -   g g       u ga 
   ugggu      agagguc cuc g gcgcgcg c  g
   |||||      ||||||| ||| | ||||||| |   
   accca      UCUCCAG GGG C CGUGUgc g  u
gac     ---CCC       A   A G       c ac 

>ptr-mir-934 (-53.50)   [ptr-miR-934:14-35]

-                   C          A    uagu 
 gaaauaaggcuucUGUCUA UACUGGAGAC CUGG    a
 ||||||||||||||||||| |||||||||| ||||    u
 cuuuauuccgagggcaggu augaccucug gacc    a
u                   a          a    caaa 

>ptr-mir-935 (-61.00)   [ptr-miR-935:55-77]

-        gcg      a             ccc  c   caucc 
 gcgggggc   ggcggc guggcgggagcgg   cu ggc     u
 ||||||||   |||||| |||||||||||||   || |||      
 cgcccucg   ccgcCG CAUCGCCUUCGCC   GA Ccg     c
u        ---      C             AUU  C   ucugc 

>ptr-mir-936 (-34.81)   [ptr-miR-936:15-36]

ucaa     cu     -------        -    AA  G   -aaa  a u 
    ggcca  gggAC       AGUAGAGG GAGG  UC CAG    uc c c
    |||||  |||||       |||||||| ||||  || |||    || |  
    ccggu  uccug       ucaucuuc uucc  ag guc    ag g c
-gac     cg     gaccauu        g    ag  a   aacg  - a 

>ptr-mir-937 (-36.30)   [ptr-miR-937:51-72]

a  -a    ccc   ----u           g  c   cccccu  u 
 gc  cugc   cgg     gagucagggug gg ugg      gc u
 ||  ||||   |||     ||||||||||| || |||      || c
 cg  gacg   gcC     CUCAGUCUCGC CC Acc      cg g
-  ag    ucc   CGUCU           G  U   ------  u 

>ptr-mir-938 (-31.80)   [ptr-miR-938:15-36]

ga          u  GCC          A   -----CA   ua 
  agguguacca gU   CUUAAAGGUG ACC       GUg  c
  |||||||||| ||   |||||||||| |||       |||   
  uccguauggu ca   gaauuuccac ugg       uac  c
--          u  --a          a   uaccaag   uu 

>ptr-mir-939 (-57.50)   [ptr-miR-939:15-38]

u    gca    c         U     U UG   GU   c 
 gugg   gggc cUGGGGAGC GAGGC C  GGG  Ggc g
 ||||   |||| ||||||||| ||||| |  |||  |||  
 cgcc   ucug gaccccucg cuccg g  ccc  ucg g
-    -ag    u         u     - gu   ag   g 

>ptr-mir-940 (-51.80)   [ptr-miR-940:59-79]

-  a   g         ccccu         -   gg  -ag  --  gug 
 ug ggu ugggcccgg     ggagcgggg ccu  gc   cc  cc   u
 || ||| |||||||||     ||||||||| |||  ||   ||  ||   g
 ac cca guccgggCC     CCUCGCCCC GGG  CG   gg  gg   a
c  c   -         -----         C   -A  GAA  aa  agu 

>ptr-mir-942 (-55.64)   [ptr-miR-942:13-34]

a           U                       uacuca 
 uuaggagagua CUUCUCUGUUUUGGCCAUGUGug      c
 ||||||||||| |||||||||||||||||||||||       
 aauccuuucau gaagagacaaagccgguacacac      a
-           u                       uccccg 

>ptr-mir-943 (-40.70)   [ptr-miR-943:59-79]

gggacguucugggcucaga    g         uuu  --      cu  ug 
                   gggg ugggggacg   gc  cgguca  gc  c
                   |||| |||||||||   ||  ||||||  ||  u
                   cccc ACCUCCUGC   CG  GUCAGU  cg  g
-----ccuacggaaacuca    G         ---  UU      Cc  cg 

>ptr-mir-944 (-44.80)   [ptr-miR-944:53-74]

-           u          a       u      aaauu 
 uuccagacaca cucaucugau uacaaua uuucuu     g
 ||||||||||| |||||||||| ||||||| ||||||      
 agggucugugu GAGUAGGCUA AUGUUAU AAAgag     u
u           c          C       U      aaaua 

>ptr-mir-99b (-28.10)   [ptr-miR-99b:6-27]

-    cC         AC   C    C - -   c 
 gcac  ACCCGUAGA  CGA CUUG G g ggc u
 ||||  |||||||||  ||| |||| | | |||  
 ugug  ugggugucu  gcu gaac c c ccg u
c    cc         gu   c    a a g   c 

>tca-mir-1 (-28.20)   [tca-miR-1:47-68]

uucgcga            c    uuc     -  gc 
       guuccgugcuuc uuac   ccaua gu  u
       |||||||||||| ||||   ||||| ||  u
       cGAGGUAUGAAG AAUG   GGUau ca  u
----aag            A    UAA     g  aa 

>tca-mir-2-3 (-37.70)   [tca-miR-2:49-71]

       u    c               g  uu    uua 
agucuug cugu cuuaucagaguuggc gu  uaga   a
||||||| |||| ||||||||||||||| ||  ||||   c
uuagagu gaca GAGUAGUUUCGACCG CA  AUcu   u
       u    C               A  CU    uag 

>tca-mir-2-1 (-35.00)   [tca-miR-2:52-74]

u   u   c    u          --    a     a   ga u 
 uua gug ugug cgcucaucaa  cugg uguga aug  u u
 ||| ||| |||| ||||||||||  |||| ||||| |||  | g
 aau uac acau gCGAGUAGUU  GACC ACACU Uac  g u
-   c   a    c          UC    G     A   uc a 

>tca-mir-2-2 (-43.50)   [tca-miR-2:50-72]

      gg   u         --u          aa     au 
ggugua  cuu cgcucauca   cugguuguga  uguga  u
||||||  ||| |||||||||   ||||||||||  |||||  u
ucacgu  gaa gCGAGUAGU   GACCGACACU  AUacu  a
      ga   c         UUC          --     au 

>tca-let-7 (-33.60)   [tca-let-7:8-28]

     uuU   G                 aguauuaca  u 
gucug   GAG UAGUAGGUUGUAUAGUa         cc a
|||||   ||| |||||||||||||||||         ||  
cagac   uuc aucguccgacaugucgu         gg u
     ccu   a                 ------gag  u 

>tca-mir-7 (-26.50)   [tca-miR-7:11-33]

u   g     U   A  C          G     - uaau 
 ggu uugug GGA GA UAGUGAUUUU UUGUu c    u
 ||| ||||| ||| || |||||||||| ||||| |     
 ccg aacac ccu cu aucacuaagg aacaa g    u
-   a     -   a  a          -     u cauu 

>tca-mir-8 (-22.44)   [tca-miR-8:47-69]

acuguua       -   g     c      uuacau 
       acaucuu acc ggcag auuaga      u
       ||||||| ||| ||||| ||||||       
       UGUAGAA UGG CUGUC UAAUcu      u
--ccucC       A   A     A      ucauau 

>tca-mir-10 (-26.60)   [tca-miR-10:11-31]

cucua   cu   -  G    U           ---  a 
     cau  ACC CU UAGA CCGAAUUUGUu   ug a
     |||  ||| || |||| |||||||||||   ||  
     gug  ugg ga aucu ggcuuaaacag   ac a
-----   uu   a  g    u           cgg  u 

>tca-mir-12 (-33.80)   [tca-miR-12:16-38]

       u      u     A    A     U       cggu 
uaaaagu cagggu UGAGU UUAC UCAGG ACUGGUu    u
||||||| |||||| ||||| |||| ||||| |||||||    u
auuuucg gucuua auuca aaug agucc uggccaa    u
       -      c     c    -     c       aaag 

>tca-mir-13a (-33.70)   [tca-miR-13a:48-69]

     gc     -       uu         ac  uuaa 
gagau  ccaag ucgucaa  ugguuguga  uc    u
|||||  ||||| |||||||  |||||||||  ||    u
uucug  gguuC AGUAGUU  ACCGACACU  ag    u
     uu     G       UC         AU  caaa 

>tca-mir-13b (-29.60)   [tca-miR-13b:46-67]

-u   cu  ca     uu         a   ua ua 
  gcc  au  gucaa  ugguuguga acc  g  u
  |||  ||  |||||  ||||||||| |||  |  u
  ugg  UG  CAGUU  ACCGACACU Ugg  u  u
gu   uu  AG     UU         A   gc ua 

>tca-mir-14 (-30.10)   [tca-miR-14:53-73]

gac  c       g  c       c   uu     u   u  u 
   uc aaugggu aa aggggag gga  ggacu acu uu u
   || ||||||| || ||||||| |||  ||||| ||| || u
   ag uuaccua uu UCCUCUC CUU  UCUGA Uga aa c
--u  c       a  A       U   UU     C   c  a 

>tca-mir-31a (-30.92)   [tca-miR-31a:12-33]

     -a   ca   AA    UC          Aaggu 
gaggc  gag  GGC  GAUG  GGCAUAGCUG     g
|||||  |||  |||  ||||  ||||||||||     u
uuccg  uuc  ccg  cuac  cuguaucggc     u
     aa   aa   gc    -u          aaagu 

>tca-mir-33 (-32.20)   [tca-miR-33:25-43]

-agaaga    u      auc      -      U  UU         guua 
       ugaa auuaug   uuagGU GCAUUG AG  GCAUUGcau    u
       |||| ||||||   |||||| |||||| ||  |||||||||     
       acuu uaauac   gauuca cgugac uc  ugugacgug    u
ucuccac    -      -gc      a      c  uc         aaac 

>tca-mir-34 (-31.80)   [tca-miR-34:11-32]

--    a  c  U  C       U   C        u  u 
  augu ca gg GG AGUGUGG UAG UGGUUGug uu u
  |||| || || || ||||||| ||| |||||||| ||  
  uaua gu cc cc ucauacc auc accagcac ag u
gc    a  a  u  c       u   -        u  u 

>tca-mir-71 (-33.90)   [tca-miR-71:10-31]

   u  ucu         U            ---     a 
guc cu   UGAAAGACA GGGUAGUGAGAU   guuua u
||| ||   ||||||||| ||||||||||||   ||||| u
uag ga   acuuucugu uccaucacucug   uaaau a
   c  ugu         -            uuu     a 

>tca-mir-87 (-39.80)   [tca-miR-87:52-72]

c    g      g        uc      u   ---g   u 
 aguc uugacg gcuugaaa  uugcuc ccc    uga u
 |||| |||||| ||||||||  |||||| |||    ||| a
 ucgg aacuGU UGGACUUU  AACGAG Ggg    gcu u
u    a      G        GA      U   aaau   u 

>tca-mir-92a (-33.40)   [tca-miR-92a:49-68]

-            u   u   gc   a       ua uu 
 cgcuuucaguag ccg gau  gug caauauu  g  u
 |||||||||||| ||| |||  ||| |||||||  |   
 gcgggaguuAUC GGC CUG  CAC GUUAuaa  u  u
c            C   C   AU   -       gc uu 

>tca-mir-92b (-32.20)   [tca-miR-92b:53-72]

       guu       u u uu     -----   u    u 
cuguguc   uaggucg g c  gugca     acu gugg u
|||||||   ||||||| | |  |||||     ||| |||| u
gacacgg   GUCCGGC C G  CACGU     uga uacu u
       aac       C U UU     UAaac   u    u 

>tca-mir-100 (-35.70)   [tca-miR-100:10-31]

---au     -  A          CC          ggc 
     ccggu gg ACCCGUAGAU  GAACUUGUGg   u
     ||||| || ||||||||||  ||||||||||    
     gguca cc uggguauuug  cuugaacacu   g
aagau     u  a          uu          ggu 

>tca-mir-124 (-27.80)   [tca-miR-124:48-70]

--   auu   cua           ug    g     uuu 
  guc   cuc   guguucacugu  gccu uaugu   u
  |||   |||   |||||||||||  |||| |||||   g
  cag   gaG   CGUAAGUGGCG  CGGA AUacg   u
uu   -ac   AAC           CA    -     caa 

>tca-mir-125 (-28.40)   [tca-miR-125:11-32]

       uauUC      A C   A       -u   a 
auuugcc     CCUGAG C CUA CUUGUGA  guu a
|||||||     |||||| | ||| |||||||  ||| a
uaggcgg     gggcuc g gau gaacacu  cag u
       -uuau      a c   c       cu   g 

>tca-mir-133 (-44.20)   [tca-miR-133:51-72]

       g     u            ucc  gu     u  a 
gcaaugu cagcu uagcugguugaa   gg  caaau gu a
||||||| ||||| ||||||||||||   ||  ||||| ||  
cguuaca guugg GUCGACCAACUU   CC  GUUua cg a
       -     U            -CC  UG     u  u 

>tca-mir-137 (-34.40)   [tca-miR-137:48-69]

ug  ug uc           ug      u    ca au 
  gu  g  acguguauucu  gguaau aaca  u  u
  ||  |  |||||||||||  |||||| ||||  |   
  ca  c  UGCACAUAAGA  UCGUUA UUgu  g  c
aa  gu gA           GU      -    ag ga 

>tca-mir-184 (-35.30)   [tca-miR-184:49-70]

uu    uc   u         -     u  c     -  au 
  uucu  cag cccuuguca uucuc cg ccggu gu  u
  ||||  ||| ||||||||| ||||| || ||||| ||   
  aagg  guu GGGAAUAGU AAGAG GC GGUca ca  u
--    gu   C         C     -  A     a  au 

>tca-mir-190 (-31.60)   [tca-miR-190:14-38]

-    -   g      -            AU      U  Uauu 
 guga guu cuauaA GAUAUGUUUGAU  UCUUGG UG    u
 |||| ||| |||||| ||||||||||||  |||||| ||    u
 cacu cga gauauu uuauacaaacug  aggacc ac    u
g    g   a      a            --      c  uuaa 

>tca-mir-210 (-34.20)   [tca-miR-210:49-69]

     ugc        -g    u        ---       
cucac   agcugcug  acgc gcacaaga   uuagau 
|||||   ||||||||  |||| ||||||||   ||||| a
gggug   UCGGCGAC  UGUG CGUGUUcu   gauuuu 
     uuA        AG    -        caa       

>tca-mir-219 (-31.42)   [tca-miR-219:11-33]

        cc    U     A     A      uuugc 
uuucaggc  UGAU GUCCA ACGCA UUCUUG     a
||||||||  |||| ||||| ||||| ||||||     a
agaguucg  acua caggu ugugu aggaac     u
        cu    -     g     c      uauuu 

>tca-mir-263b (-28.90)   [tca-miR-263b:11-30]

        ccU     C         U   a    gu 
cuuacgaa   UGGCA UGGAAGAAU CAC gauu  a
||||||||   ||||| ||||||||| ||| ||||  u
gggugcuu   accgu auuuucuua gug cuaa  u
        uau     a         -   -    gu 

>tca-mir-275 (-35.40)   [tca-miR-275:45-67]

   a          c    -     a    -gg  u 
gcu cgcguguuac ucag uaccu ggcu   gg u
||| |||||||||| |||| ||||| ||||   ||  
cga GCGCGCGAUG AGUC AUGGA CUga   cu u
   c          A    C     -    aag  u 

>tca-mir-276 (-31.90)   [tca-miR-276*:11-30] [tca-miR-276:46-67]

uaga   cu    A     AG          --   u 
    cca  aGCG GGUAU  AGUUCCUACg  uga u
    |||  |||| |||||  ||||||||||  |||  
    ggu  UCGU CCAUA  UCAAGGAUgu  gcu u
---a   UC    G     CU          cg   u 

>tca-mir-277 (-39.30)   [tca-miR-277:53-75]

       -c          - c         cugcacc    u 
gugggcu  cgugccagau g gcguuuaca       guuc a
|||||||  |||||||||| | |||||||||       ||||  
cacccgA  GCAUGGUCUA C CGUAAAUgu       uaag a
       CA          U A         -----cu    a 

>tca-mir-279a (-28.40)   [tca-miR-279a:43-64]

          uc         g  ac    u 
cuugaugggu  gggucuagu gc  gguu u
||||||||||  ||||||||| ||  |||| u
gAAUUACUCA  CCUAGAUCA Ug  ucaa u
          CA         G  cu    c 

>tca-mir-281 (-30.30)   [tca-miR-281*:10-31] [tca-miR-281:45-65]

ucgaaa           -UA     C      a  u 
      augAAGAGAGC   UCCGU GACAGU ua a
      |||||||||||   ||||| |||||| || a
      uaUUUCUCUCG   AGGUA CUGUca au u
------           UUG     -      c  u 

>tca-mir-282 (-31.30)   [tca-miR-282:9-32]

ug     g       UCC      U     G  aau 
  uagag UAGCCUC   UAGGCU UGUCU Ug   u
  ||||| |||||||   |||||| ||||| ||    
  auuuc aucggag   guccga acaga gc   u
cg     a       uua      u     -  cgg 

>tca-mir-283 (-31.60)   [tca-miR-283:11-30]

     c     -        C     A       uuga 
guugu ugugA AAUAUCAG UGGUA UUCUggg    u
||||| ||||| |||||||| ||||| |||||||     
caaca auacu uuauaguc gcuau aagaccc    g
     a     a        a     -       uaga 

>tca-mir-305 (-30.90)   [tca-miR-305:10-32]

      uc  U         U      C  U  uaua 
cacaug  uA UGUACUUCA CAGGUG UC Gg    c
||||||  || ||||||||| |||||| || ||     
guguau  au acgugaggu guccac ag cc    u
      ua  c         u      -  c  uuuu 

>tca-mir-307 (-31.10)   [tca-miR-307:42-61]

--   ga         ccu  g       u  uu 
  ggu  cucacucaa   gg ugugaug gu  g
  |||  |||||||||   || ||||||| ||  c
  cca  GAGUGAGUU   CC ACACUac ca  u
gg   gc         CCU  A       -  ug 

>tca-mir-317 (-34.50)   [tca-miR-317:46-70]

  c  -u       -      --           cu  au 
gg gg  gcugggg accacc  cuguguuuacu  gu  u
|| ||  ||||||| ||||||  |||||||||||  ||   
cc uc  UGACUCU UGGUGG  GACACAAGUga  ca  u
  u  uu       A      UC           -c  gc 

>tca-mir-927 (-31.10)   [tca-miR-927:7-28]

u               CU       A   u  g 
 uucggUUUAGAAUUC  ACGCUUU CCg gu a
 |||||||||||||||  ||||||| ||| || a
 aagcuaagucuuagg  ugcgaaa ggu cg a
c               uu       c   -  g 

>tca-mir-932 (-42.30)   [tca-miR-932:14-35]

    u   u       A       G   A      ugu    a 
ggag gcg gucuUCA UUCCGUA UGC UUGCAG   uugu g
|||| ||| ||||||| ||||||| ||| ||||||   ||||  
ucuc ugc uaggagu aaggcgu acg aacguc   gacg c
    -   u       g       g   -      --u    a 

>tca-mir-iab-4 (-33.10)   [tca-miR-iab-4-5p:14-35] [tca-miR-iab-4-3p:48-71]

uuaaa  c     -            U    -  U  gu u 
     cc ccugu ACGUAUACUGAA GUAU CC GA  g u
     || ||||| |||||||||||| |||| || ||  |  
     gg ggaCA UGCAUAUGACUU CAUA GG cu  c u
-cacc  a     A            C    U  C  gu u 

>tca-mir-929 (-49.60)   [tca-miR-929:26-46]

-   cgg  au     uc        A        AG         C    c 
 aga   cc  cuuaa  ggggucaa UUGACUCU  UAGGGAGUC guua u
 |||   ||  |||||  |||||||| ||||||||  ||||||||| |||| u
 ucu   gg  gaguu  ccucaguu gacugagg  aucccucag cgau u
a   aaa  --     uc        g        ca         -    a 

>tca-mir-9b (-28.28)   [tca-miR-9b:34-56]

cuccaauc    -  acgcaau   aaccgca             C    -   A   cuca 
        ucca cg       gcc       uuGCUUUGGUAAU UAGC UUU UGA    a
        |||| ||       |||       ||||||||||||| |||| ||| |||    a
        aggu gu       cgg       aaugaaaccauua aucg aaa acu    u
--aaacca    u  ccacccc   cuaaaac             a    c   c   aaaa 

>hsv1-mir-H2 (-37.60)   [hsv1-miR-H2*:8-29] [hsv1-miR-H2:47-70]

   a  -       G  -   -   A   ACU    ucu 
gcc cc gUCGCAC CG CCC GGC CAG   cugu   u
||| || ||||||| || ||| ||| |||   ||||   g
cgg gg CAGCGUG GC GGG CCG GUC   ggcg   g
   -  U       A  A   A   A   --C    cuu 

>hsv1-mir-H3 (-50.70)   [hsv1-miR-H3*:12-33] [hsv1-miR-H3:50-70]

          gC   UG      -      G  U   g g 
ccgcgggcgc  UCC  ACCGCG GGUUCC AG ugg c u
||||||||||  |||  |||||| |||||| || ||| | g
ggugcccgcg  AGG  UGGCGU UCAGGG UC auu g g
          gC   GU      G      -  c   g a 

>hsv1-mir-H4 (-48.80)   [hsv1-miR-H4:9-30] [hsv1-miR-H4*:54-75]

       -    A     U             g   g   a 
gccgggg uGGU GAGUU GACAGGCAAGCAu ugc ugc g
||||||| |||| ||||| ||||||||||||| ||| |||  
cggcucU AUCG CUCAA CUGUCCGUUCgug aug gcg a
       G    -     U             -   a   g 

>hsv1-mir-H5 (-42.90)   [hsv1-miR-H5-5p:11-32] [hsv1-miR-H5-3p:53-74]

        ucG        CG  C      -    c  ugcc 
gcgcuccc   GGGGGGUU  GG AUCUCU ACcu ag    g
||||||||   ||||||||  || |||||| |||| ||     
cgcgggGG   CCUCCCAA  CC UAGAGA UGga uc    c
        ---        -A  -      C    c  uaac 

>hsv1-mir-H6 (-50.20)   [hsv1-miR-H6-5p:14-34] [hsv1-miR-H6-3p:54-74]

       -c   a          CA        U   --a  g 
cgggggg  cgg gGGUGGAAGG  GGGGGGUG Agg   ug g
|||||||  ||| ||||||||||  |||||||| |||   || u
gcucccc  gcc CCUACCUUCC  CCCUUCAC uuc   ac a
       uu   C          UG        c   agg  u 

>dan-mir-92b (-32.92)   [dan-miR-92b:55-76]

ac u   - uga         u c cg    uu      uacuu 
  g cac c   uguaggccg g c  gugc  auuugu     u
  | ||| |   ||||||||| | |  ||||  ||||||     u
  c gug g   aCGUCCGGC C G  CACG  UAAaca     g
aa u   a -ug         C U AU    -U      uaaag 

>dan-mir-288 (-19.30)   [dan-miR-288:62-84]

caugucguaauuagcagggcacagaauugccggcgauaauu     c     u  c uu 
                                         aauga guugg ca g  g
                                         ||||| ||||| || |  g
                                         UUACU UAGCU GU C  U
----------------------------ccggcacaGUACU     U     -  A UU 

>dan-mir-277 (-38.90)   [dan-miR-277:59-81]

--   a g       gc  -   gu    -            --  gaaac 
  uug a guuuugg  ug cgu  cagg agugcauuugca  cu     a
  ||| | |||||||  || |||  |||| ||||||||||||  ||      
  aac u caagacc  AC GCA  GUCU UCACGUAAAUgu  ga     u
cu   a g       uu  A   UG    A            uc  agucu 

>dan-mir-8 (-31.34)   [dan-miR-8:54-76]

        cu uu -       -   g     c      uccuuu 
aaggacau  g  c acaucuu acc ggcag auuaga      c
||||||||  |  | ||||||| ||| ||||| ||||||       
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu      u
        -- cu C       A   A     A      caauag 

>dan-bantam (-25.50)   [dan-bantam:52-74]

au     uac    c          uu      g   -  uu 
  uugac   gaaa cgguuuucga  ugguuu acu gu  u
  |||||   |||| ||||||||||  |||||| ||| ||  u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga ca  u
--     ---    A          UU      G   a  ua 

>dan-mir-7 (-32.20)   [dan-miR-7:14-36]

       u     U       U  U     --       uggu 
agugcau ccgua GGAAGAC AG GAUUU  UGUUGUu    u
||||||| ||||| ||||||| || |||||  |||||||    u
uuacgug ggcau ucuucug uc cuaaa  acaauaa    a
       c     -       u  c     ua       uggu 

>dan-mir-87 (-29.30)   [dan-miR-87:59-79]

--  u     auu        -u  c     g     uuaccgaua 
  ca auuuc   cgcgccug  au uugcu aaccg         u
  || |||||   ||||||||  || ||||| |||||         g
  gu uaaag   GUGUGGAC  UA AACGA UUggc         g
uu  u     agu        UU  A     G     cuaagacac 

>dan-mir-92a (-38.10)   [dan-miR-92a:53-74]

au      uu        a     -     u   g    ugaa 
  acaaau  cccguagg cggga aggug caa guuu    u
  ||||||  |||||||| ||||| ||||| ||| ||||    u
  uguuug  gggUAUCC GCCCU UUCAC GUU Caaa    a
ac      gc        G     G     -   A    uuaa 

>dan-mir-304 (-28.60)   [dan-miR-304:12-34]

    ca    a       AAU       U     - ga  u  g 
gcag  uuga UAAUCUC   UUGUAAA GUGAG c  uu ga c
||||  |||| |||||||   ||||||| ||||| |  || ||  
cguc  agcu guuagag   aacguuu cacuc g  ag uu c
    ag    c       guc       -     a gc  u  a 

>dan-mir-2a-2 (-32.90)   [dan-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g aac 

>dan-mir-284 (-42.90)   [dan-miR-284:64-92]

--         c              acuguguagccugugagggcaag 
  guugcaguu cuggaauuaaguug                       g
  ||||||||| ||||||||||||||                        
  cggcGUUAA GACCUUAGUUCAAC                       c
cc         C              GACUGAAGAcuucgucaagaguu 

>dan-mir-9b (-29.50)   [dan-miR-9b:15-37]

u   --c        uUC         UUU    G     uguc 
 gca   auuauuug   UUUGGUGAU   AGCU UAUGg    u
 |||   ||||||||   |||||||||   |||| |||||    c
 cgu   ugguaaac   aaaccauua   ucga auacc    a
a   uuu        caa         -uu    g     uuau 

>dan-mir-2b (-37.30)   [dan-miR-2b:54-76]

u      a          -         a   --uuu  cuu 
 uguguc uucuucaaag ugguuguga aug     gc   u
 |||||| |||||||||| ||||||||| |||     ||    
 acgcag GAGGAGUUUC ACCGACACU Uac     cg   u
a      C          G         A   uuauc  uau 

>dan-mir-12 (-31.00)   [dan-miR-12:7-29]

      UG     U    C          -  gccuu 
uacggc  AGUAU ACAU AGGUACUGGU gu     u
||||||  ||||| |||| |||||||||| ||      
gugccg  ucaua ugua uucaugacca ca     a
      ca     c    -          a  accua 

>dan-mir-285 (-34.80)   [dan-miR-285:64-85]

--  ga       -a     ga    u      a    uaucaag     cc 
  uc  aucaaag  acuga  ucga uggugc uaga       gagau  g
  ||  |||||||  |||||  |||| |||||| ||||       |||||   
  ag  uaguuuu  UGACU  AGCU ACCACG AUcu       cuuua  a
ca  aa       CG     AA    U      -    ----uaa     cu 

>dan-mir-13a (-29.36)   [dan-miR-13a:47-68]

    u     c      -        a   uugcca 
uacg aacuc ucaaag ggcuguga aug      u
|||| ||||| |||||| |||||||| |||      u
gugc uUGAG AGUUUU CCGACACU Uac      a
    u     U      A        A   ucaucu 

>dan-mir-308 (-24.50)   [dan-miR-308:41-62]

           u       u    uuu guu 
cucgcaguaua uuuugug uuug   g   u
||||||||||| ||||||| ||||   |    
GAGUGUCAUAU AGGACAC AAac   c   g
           U       U    --u aaa 

>dan-mir-312 (-26.80)   [dan-miR-312:39-57]

   g      u       cu    guuu 
ggu cgucuc agugcaa  cuug    u
||| |||||| |||||||  ||||     
CCG GCAGAG UCACGUU  gaac    u
   -      U       AU    auau 

>dan-mir-3 (-35.96)   [dan-miR-3:47-68]

                    g    u   caccaa 
gaucuugggacgcauuuugu cagu aug      a
|||||||||||||||||||| |||| |||      a
cuaggACUCUGUGUGAAACG GUCA Uac      a
                    G    C   cuauau 

>dan-mir-287 (-19.50)   [dan-miR-287:47-67]

uu   a   g uc   aa     c           a 
  ggu gug g  uga  uuuug acacauuuaca u
  ||| ||| |  |||  ||||| ||||||||||| a
  uca CAC U  GCU  AAAGU UGUGUaaaugu a
ug   a   G UU   -A     -           u 

>dan-mir-310 (-34.02)   [dan-miR-310:56-77]

     aa       c   a    ga c   a        auauu 
aacau  acacuug agg cggg  g gug caauauau     u
|||||  ||||||| ||| ||||  | ||| ||||||||     u
uugua  ugugaaU UCC GCCC  C CAC GUUAUaua     a
     aa       A   G    UC A   -        caaau 

>dan-mir-13b-1 (-21.90)   [dan-miR-13b:44-65]

   -ug         -    u    ccu    u   u 
cca   ucguuaaaa ggcu guga   uaug auu c
|||   ||||||||| |||| ||||   |||| |||  
ggu   AGCAGUUUU CCGA CACU   AUac uaa g
   uUG         A    -    ---    -   c 

>dan-mir-4 (-22.90)   [dan-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag    - uu 
u  caau a  uuc  uggu guc agc     guga c  c
|  |||| |  |||  |||| ||| |||     |||| |   
g  guug u  aAG  ACCA CAG UCG     UAcu g  u
 gu    c ug   UU    A   A   --AAA    a uc 

>dan-mir-281-2 (-32.70)   [dan-miR-281-2*:15-36] [dan-miR-281:62-84]

     a  gaa ug        -UA     C      ---ca    aaa 
cgaau gu   a  AAGAGAGC   UCCGU GACAGU     aguu   a
||||| ||   |  ||||||||   ||||| ||||||     ||||    
gcuua ca   U  UUCUCUCG   AGGUA CUGUca     uuag   c
     -  aua GU        UUA     -      uaaug    gca 

>dan-mir-79 (-36.04)   [dan-miR-79:56-77]

ag    uu  -            cgc       g     uagauu 
  cugc  aa ccgaugcuuugg   uuuagcu uauga      u
  ||||  || ||||||||||||   ||||||| |||||       
  gacg  uu gguUACGAAACC   AGAUCGA AUacu      a
cg    cc  c            AUU       A     ucauaa 

>dan-mir-124 (-34.10)   [dan-miR-124:57-79]

uc  uu   -a     uu   c      c      ag    a    uau 
  gu  ggu  cguuu  cuc ugguau cacugu  gccu uaug   u
  ||  |||  |||||  ||| |||||| ||||||  |||| ||||   u
  ca  uca  gcaag  gaG ACCGUA GUGGCG  CGGA AUac   c
aa  uc   aa     -c   A      A      CA    -    cag 

>dan-mir-1 (-35.00)   [dan-miR-1:54-75]

-a   uuu  --ga            c        a   -  auaa 
  gcc   ga    guuccaugcuuc uugcauuc aua gu    u
  |||   ||    |||||||||||| |||||||| ||| ||     
  cgg   cu    cGAGGUAUGAAG AAUGUAAG Uau cg    a
aa   --u  aaag            A        G   a  aacu 

>dan-mir-210 (-37.92)   [dan-miR-210:52-72]

ac   -g     ugc        gc   -         uuaga 
  ggu  cuuau   agcugcug  cac ugcacaaga     c
  |||  |||||   ||||||||  ||| |||||||||     u
  ccg  gaaug   UCGGCGAC  GUG GCGUGUUcu     u
ua   ga     uuA        -A   U         cagaa 

>dan-mir-307 (-40.10)   [dan-miR-307:56-75]

u        -   a         ccu  g       -u    uc 
 gucuugcu uug cucacucaa   gg ugugaug  uauu  g
 |||||||| ||| |||||||||   || |||||||  ||||  a
 caggacga agc GAGUGAGUU   CC ACACUac  augg  u
a        u   -         CCU  A       cu    ua 

>dan-mir-184 (-34.10)   [dan-miR-184*:16-36] [dan-miR-184:55-76]

cc    c  u  ua         -     G  -  CCG   -g a 
  ggug au cg  cCCUUAUCA UUCUC CG CC   ugu  c u
  |||| || ||  ||||||||| ||||| || ||   |||  | a
  ccac ua gc  GGGAAUAGU AAGAG GC GG   aca  g a
aa    -  u  uC         C     -  A  Uca   ga u 

>dan-mir-283 (-29.80)   [dan-miR-283:15-35]

cu     uu      AA           U         a --c    cc 
  gauuc  aaaggU  AUAUCAGCUGG AAUUCUggg g   uaug  u
  |||||  ||||||  ||||||||||| ||||||||| |   ||||   
  uuaag  uuuuca  uaugguugacu uuaaggcuc c   guau  g
--     cu      gc           -         a aaa    ua 

>dan-mir-280 (-25.40)   [dan-miR-280:10-36]

u    uuua     U   G                --A      
 ggcu    UGUAU UAC UUGCAUAUGAAAUGAU   uuuau 
 ||||    ||||| ||| ||||||||||||||||   |||| a
 ccga    acgua aug gacguauauuuuauua   aaaug 
-    ----     u   -                gac      

>dan-mir-34 (-41.84)   [dan-miR-34:14-35]

ug   a  -   uu        U  U   C        uagcugg    c 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug       ugcu g
  ||| || |||  |||||||| || ||| ||||||||       ||||  
  cga ac gcg  gccgucac uc auc accgacac       acgg u
--   -  a   cc        u  u   -        uuaauua    u 

>dan-mir-iab-4 (-26.50)   [dan-miR-iab-4-5p:7-28] [dan-miR-iab-4-3p:41-64]

    -a             U    C   Ag  u 
ucgu  uACGUAUACUGAA GUAU CUG  ug a
||||  ||||||||||||| |||| |||  || u
agca  AUGCAUAUGACUU CAUA GGC  au c
    CA             C    U   cu  c 

>dan-mir-2c (-29.30)   [dan-miR-2c:57-79]

au    c  u       -      aag     aa  g       ug 
  cuua uu caauguc aucaaa   ggcug  ga auauuuc  c
  |||| || ||||||| ||||||   |||||  || |||||||  a
  gaau aa guuaCGG UAGUUU   CCGAC  CU Ugugaag  u
-c    -  c       G      CGA     -A  A       uu 

>dan-mir-263a (-35.46)   [dan-miR-263a:12-35]

--      g   a  UA   G     GA   AU       guaauu 
  aucucg cac GU  AUG CACUG  AGA  UCACggg      u
  |||||| ||| ||  ||| |||||  |||  |||||||      c
  uagggc gug ua  uac gugau  ucu  agugccc      u
au      -   g  uc   g     uc   --       aacaua 

>dan-mir-286 (-28.74)   [dan-miR-286:69-91]

--         aaug    u   -    a          uucacaaaaaaa   guu 
  uuaaaauug    gcga ugu cggu uggucgcuuu            uug   a
  |||||||||    |||| ||| |||| ||||||||||            |||    
  aauuuuaau    UGCU ACA GCCA AUCAGUgaag            aac   c
aa         aUCG    C   A    G          ----------cg   aac 

>dan-mir-282 (-41.10)   [dan-miR-282:10-37]

uu    -a  G           AC      U      Ugcau   a 
  ccuu  ua AUCUAGCCUCU  UAGGCU UGUCUG     ucg a
  ||||  || |||||||||||  |||||| ||||||     ||| a
  ggaa  au uggauuggaga  auccga acagac     agc g
gc    cc  g           au      u      ----u   u 

>dan-mir-276b (-42.10)   [dan-miR-276b:61-82]

ac   -     auuug   uc    a     a           ugcc   ua 
  cga agccu     cca  agcg gguau gaguuccuacg    acu  a
  ||| |||||     |||  |||| ||||| |||||||||||    |||   
  gcu ucggg     ggu  UCGU CCAUA UUCAAGGAUgc    uga  a
ca   g     ----a   UC    G     A           ----   uc 

>dan-mir-263b (-32.20)   [dan-miR-263b:15-35]

-u     -c   g   C        G G     U     -u      
  gcugu  uuu aau UUGGCACU G AGAAU CACag  ugauu 
  |||||  ||| ||| |||||||| | ||||| |||||  |||| u
  cggua  aaa uua aaccgugg c ucuug guguc  auuau 
uc     au   g   a        g g     -     uu      

>dan-mir-274 (-36.30)   [dan-miR-274:14-39]

-             --U       C  A  CU        U   acagg 
 uguugcaguuucg   UUUGUGA CG CA  AACGGGUA Uuu     a
 |||||||||||||   ||||||| || ||  |||||||| |||      
 acgacguuaaagu   aaacacu gc gu  uugcucau agg     c
a             ccu       a  -  uu        u   acaua 

>dan-mir-316 (-29.00)   [dan-miR-316:16-37]

      -    c   u           G   -A   G    uaau 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uua gcggaaaaagg gaa  gac gcaa    c
      u    u   u           -   ag   a    caaa 

>dan-mir-306 (-41.92)   [dan-miR-306:15-36]

   -    u   a          UU    A       ugcau 
guc cacu ggu gcUCAGGUAC  AGUG CUCUCAA     u
||| |||| ||| ||||||||||  |||| |||||||     u
cag guga cua cggguccgug  ucac gaggguu     g
   c    -   c          uu    c       uuaca 

>dan-mir-275 (-46.60)   [dan-miR-275:52-74]

-a    c     u         -a    ug   gg     guuu 
  gucu cuacc ugcgcgcua  ucag  acc  ggcug    u
  |||| ||||| |||||||||  ||||  |||  |||||     
  caga ggugg GCGCGCGAU  AGUC  UGG  CUgac    u
ua    c     u         GA    CA   -A     aacg 

>dan-mir-2a-1 (-38.66)   [dan-miR-2a:48-70]

          -     -         a    auuucc 
gcugggcuca caaag ugguuguga augc      a
|||||||||| ||||| ||||||||| ||||      u
cgauuCGAGU GUUUC ACCGACACU Uacg      u
          A     G         A    cccguu 

>dan-mir-281-1 (-32.76)   [dan-miR-281-1*:15-36] [dan-miR-281:54-76]

      cg  a           -UG     C      ccagau 
cgaaua  ug auaAAGAGAGC   UCCGU GACAGU      a
||||||  || |||||||||||   ||||| ||||||      c
gcuuau  au UGUUUCUCUCG   AGGUA CUGUca      c
      -a  a           UUA     -      caauau 

>dan-mir-317 (-43.50)   [dan-miR-317:55-78]

-    --u    ug     aua    --     c      u aa  a 
 ugca   cggc  cuggg   cacc  cugug ucgcuu g  ug a
 ||||   ||||  |||||   ||||  ||||| |||||| |  || a
 acgu   gccg  GACCU   GUGG  GACAC AGUgaa c  ac u
u    uuu    gU     AUG    UC     A      - ga  g 

>dan-mir-13b-2 (-26.10)   [dan-miR-13b:42-63]

--   g          a      cu    -   a 
  agc cgucgaaaug cuguga  uaug cgu u
  ||| |||||||||| ||||||  |||| ||| u
  uUG GCAGUUUUAC GACACU  AUac gua u
gu   A          C      --    u   g 

>dan-mir-309 (-23.30)   [dan-miR-309:43-64]

      c       c   uu    u    caau 
auuaua gacaaac uug  cggu uugc    u
|||||| ||||||| |||  |||| ||||     
uaauAU CUGUUUG AAU  GUCA Gacg    u
      C       A   GG    C    aucc 

>dan-mir-279 (-35.80)   [dan-miR-279:56-77]

-u         u          a     c  uguu     uug  u 
  acuacuguu uuagugggug ggguc ag    ucaca   au u
  ||||||||| |||||||||| ||||| ||    |||||   ||  
  ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   ug c
cu         u          A     A  ----     uua  u 

>dan-mir-276a (-37.16)   [dan-miR-276a:55-76]

cu     uug   uc    a     ag          uuaaca 
  gguuu   cca  agcg gguau  aguuccuacg      u
  |||||   |||  |||| |||||  ||||||||||      u
  ccaga   ggu  UCGU CCAUA  UCAAGGAUgc      a
au     --a   UC    G     CU          ucaaau 

>dan-mir-9c (-27.30)   [dan-miR-9c:13-34]

    uu    uuU         UCU    G     u  uuc   c 
auuu  gcug   CUUUGGUAU   AGCU UAGAu gu   acg a
||||  ||||   |||||||||   |||| ||||| ||   ||| c
uaaa  cgac   gaaaccaua   ucga aucua ua   ugu a
    uu    cuc         uuu    a     c  -ua   u 

>dan-mir-5 (-22.00)   [dan-miR-5:3-25]

--ua       C               ---  uuu 
    AAAGGAA GAUCGUUGUGAUAUG   cg   a
    ||||||| |||||||||||||||   ||   u
    uuuccuu uuagugacacuauac   gc   c
aaua       -               auu  ucc 

>dan-mir-9a (-29.00)   [dan-miR-9a:10-32]

    -     U       UAU      G     -  gau 
gcua uguug CUUUGGU   CUAGCU UAUGA gu   a
|||| ||||| |||||||   |||||| ||||| ||    
cgau auaau gaagcca   gaucga auacu ca   a
    u     u       uuc      a     g  aua 

>dan-mir-315 (-32.20)   [dan-miR-315:12-33]

       auaa   UG          A       cuua   a 
cacuuau    UUU  AUUGUUGCUC GAAAGCc    uaa u
|||||||    |||  |||||||||| |||||||    |||  
gugaaua    aaa  uaauaacgag cuuucgg    auu u
       aacc   gu          -       -ucg   a 

>dan-mir-14 (-28.30)   [dan-miR-14:41-61]

        c    cg      c     gcu 
ugugggag gaga  gggacu acugu   u
|||||||| ||||  |||||| |||||   a
auAUCCUC CUCU  UUCUGA Ugaua   u
        U    UU      C     aau 

>dan-mir-33 (-37.20)   [dan-miR-33:15-35]

cg      u    c  -G           C C        uccca 
  gagaug cacg AG  UGCAUUGUAGU G AUUGucug     c
  |||||| |||| ||  ||||||||||| | ||||||||      
  cuuuac gugu uc  acgugacguca c uaacggac     u
ca      -    c  ga           a a        cucgu 

>dan-mir-6-1 (-31.00)   [dan-miR-6:43-64]

aa              g      c    ag  u 
  guagagagaauagu gcugug ugua  uu c
  |||||||||||||| |||||| ||||  ||  
  cgUUUUUCUUGUCG UGACAC AUau  aa a
ca              G      U    cu  a 

>dan-mir-318 (-27.60)   [dan-miR-318:44-65]

u          c   c        u   -  a u 
 uugugggaua aca gguucagu gug uc c u
 |||||||||| ||| |||||||| ||| || |  
 aauACUCUAU UGU UCGGGUCA Uac ag g u
g          U   U        C   g  c u 

>dan-mir-305 (-24.40)   [dan-miR-305:8-30]

     cu U         U  G     CU   gucc 
caugu  A UGUACUUCA CA GUGCU  Ggu    a
|||||  | ||||||||| || |||||  |||     
guaua  u acaugaagu gu cacgg  cca    c
     ac c         u  a     -c   augc 

>dan-mir-314 (-31.20)   [dan-miR-314:68-88]

u  u       g     u   au     uaguu    ---a      ag 
 cg aacuugu uggcu cga  guacc     gagg    aaaauc  u
 || ||||||| ||||| |||  |||||     ||||    ||||||   
 GC UUGAAUA ACCGA GCU  UAUgg     cucc    uuuuag  u
G  -       -     -   --     ----u    auug      gu 

>dan-mir-289 (-28.49)   [dan-miR-289:16-50]

gaguuuacaguaaaaUAAAUAUUUAAGUGGAGCCUGCGACUCUGCUACUGccacugccacugccacu    - ugc        ga 
                                                                   gcca c   cgcucggg  g
                                                                   |||| |   ||||||||   
                                                                   cggu g   gcgaguuc  u
--------------------------------------------------------cagaaaaugca    u uuu        ac 

>dan-let-7 (-29.54)   [dan-let-7:11-31]

  u      uU   G     G           gcaacu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa      a
|| ||||||  ||| ||||| |||||||||||       
ag ucguuu  uuc aucgu uaacauaucau      a
  u      cu   g     g           gcuaag 

>dan-mir-133 (-35.30)   [dan-miR-133:55-76]

ug    -     a             cauc  gu     -  auc 
  caac gcugu uguagcugguuga    gg  cagau cu   u
  |||| ||||| |||||||||||||    ||  ||||| ||   u
  guug ugacg aUGUCGACCAACU    CC  GUUua ga   u
ua    g     -             -UCC  UG     c  acu 

>dan-mir-31b (-30.60)   [dan-miR-31b:4-25]

au     A     UC  A       -agagcacaga ga   ag   g 
  uUGGC AGAUG  GG AUAGCUG           g  ucg  cga u
  ||||| |||||  || |||||||           |  |||  |||  
  aacug ucuac  cc uaucggc           c  agc  gcu c
-u     a     -u  g       gaaaccuuaag ag   ca   a 

>dan-mir-278 (-37.20)   [dan-miR-278:57-78]

gu      acgg     c       u     a  a     g   cc 
  aauggu    ugcga cggauga gguuc ca cgacc ugu  u
  ||||||    ||||| ||||||| ||||| || ||||| |||  u
  uuaccg    augUU GCCUGCU UCAGG GU GCUgg gca  c
gu      --ca     U       U     -  G     -   ag 

>dan-mir-311a (-31.40)   [dan-miR-311a:50-71]

cc      ucu     a      uu   u       gaua 
  agauua   ucagg cgguau  gug caauaug    u
  ||||||   ||||| ||||||  ||| |||||||    u
  ucuagu   AGUCC GCCAUA  CAC GUUAUac    u
-c      ---     G      UU   -       aaac 

>dan-mir-11 (-28.40)   [dan-miR-11:52-72]

  a   gc         ucu      cu    ucc    u 
gc cuu  caagaacuc   cuguga  ugug   uuuu u
|| |||  |||||||||   ||||||  ||||   ||||  
cg gag  GUUCUUGAG   GACACU  ACac   aaag u
  a   uC         UCU      --    -uc    c 

>dan-mir-6-3 (-31.92)   [dan-miR-6:49-70]

    a                  c        uuauu 
caaa agaagggaacggucgcug ugauguag     c
|||| |||||||||||||||||| ||||||||     g
guuu uUUUUUCUUGUCGGUGAC ACUAUauu     c
    g                  -        uacua 

>dan-mir-125 (-31.70)   [dan-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dan-mir-219 (-33.70)   [dan-miR-219:19-41]

ua    -a     u   ua    U     AA           -----   a 
  auuc  auuuu agc  UGAU GUCCA  CGCAAUUCUUG     uug a
  ||||  ||||| |||  |||| |||||  |||||||||||     |||  
  uaag  uaaag ucg  gcua cgggu  gcguugggaac     aac u
ca    ca     c   gc    -     ca           ucaua   u 

>dan-mir-311b (-22.80)   [dan-miR-311b:46-67]

ca       a   u  uu  g    a    ac   u 
  uuuccag cug gg  ug gcag uacu  auu u
  ||||||| ||| ||  || |||| ||||  |||  
  aaaGGUC GAC CC  AC CGUU AUga  uag a
--       C   C  UU  A    -    -c   g 

>dan-mir-10 (-31.00)   [dan-miR-10:9-29]

     ucu   -  G    U             auacu 
ccacg   ACC CU UAGA CCGAAUUUGUuuu     a
|||||   ||| || |||| |||||||||||||      
ggugu   ugg ga aucu ggcuuaaacagga     g
     guu   a  g    u             auuuu 

>dan-mir-6-2 (-26.61)   [dan-miR-6:58-79]

     cc       u  ug   c       uuauucuccca 
uagcc  agggaac gu  cug ugauaua           a
|||||  ||||||| ||  ||| |||||||           a
gucgg  UUUCUUG CG  GAC ACUAUau           a
     UU       U  GU   -       ccacuaaaaaa 

>dan-mir-31a (-38.20)   [dan-miR-31a:14-36]

       uua       A     U         UGAcguuggaaa 
ucuguug   aauUGGC AGAUG CGGCAUAGC            a
|||||||   ||||||| ||||| |||||||||            c
agguaac   uugacug ucuac gucguaucg            g
       uug       a     -         cgagaguuuuaa 

>dan-mir-100 (-27.10)   [dan-miR-100:12-33]

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   u
ac    c     ga       ac   ca      u u uau 

>der-mir-308 (-24.40)   [der-miR-308:42-63]

           u       u    u  c u 
cucgcaguaua uuuugug uuug uu g u
||||||||||| ||||||| |||| || | u
GAGUGUCAUAU AGGACAC AAac aa c u
           U       U    u  a g 

>der-mir-283 (-29.55)   [der-miR-283:15-35]

ac     uc      AA           U         agcuaagccu 
  gauuc  aaaggU  AUAUCAGCUGG AAUUCUggg          a
  |||||  ||||||  ||||||||||| |||||||||           
  uuaag  uuuuca  uaugguugacu uuaaggcuc          a
--     uu      gc           -         acaaaguaua 

>der-mir-31b (-37.21)   [der-miR-31b:14-35]

    -     aau     A     UC  A       -----------agag    -----g    u   gcc 
caaa uaaug   uUGGC AGAUG  GG AUAGCUG               caca      cgga cga   u
|||| |||||   ||||| |||||  || |||||||               ||||      |||| |||    
guuu auuac   aacug ucuac  cc uaucggc               gugu      gccu gcu   c
    c     guu     a     -u  g       gaaaaguuuuuauaa    aaaaaa    -   auu 

>der-mir-5 (-22.02)   [der-miR-5:3-25]

--ua       C               cguug 
    AAAGGAA GAUCGUUGUGAUAUG     u
    ||||||| |||||||||||||||     u
    uuuccuu uuagugacacuauac     c
aaua       -               aaucc 

>der-mir-287 (-23.30)   [der-miR-287:62-82]

ga   uggauguaug   -   ug   ucugaa     gc           a 
  cgc          ggu gug  ggc      auuuu  acacauuuaca u
  |||          ||| |||  |||      |||||  ||||||||||| a
  gcg          uca CAC  UUG      UAAAA  UGUGUaaaugu a
-a   ----------   g   GU   -----C     GU           u 

>der-mir-13b-2 (-26.10)   [der-miR-13b:44-65]

uu   g          a      acua      uu 
  agc cgucaaagug cuguga    ugugga  u
  ||| |||||||||| ||||||    ||||||   
  uUG GCAGUUUUAC GACACU    AUacuu  g
gu   A          C      ----      ca 

>der-mir-310b (-27.42)   [der-miR-310b:53-74]

-    -aa       c  ga    uc      u      uaaau 
 acac   auauuug ag  cggg  gugugu aaugua     c
 ||||   ||||||| ||  ||||  |||||| ||||||     u
 ugug   uguaaaU UC  GCCC  CACACG UUAUau     a
u    acc       U  UC    UU      -      cgauu 

>der-let-7 (-30.44)   [der-let-7:11-31]

  u      uU   G     G           guaauu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa      a
|| ||||||  ||| ||||| |||||||||||       
ag ucguuu  uuc aucgu uaacauaucau      c
  u      cu   g     g           acuaca 

>der-mir-309 (-20.10)   [der-miR-309:44-65]

      c       c   uu    u   c aau 
auuaua gacaaac uug  cggu uug c   u
|||||| ||||||| |||  |||| ||| |   u
uaauAU CUGUUUG AAU  GUCA Gac g   c
      C       A   GG    C   c auc 

>der-mir-100 (-27.10)   [der-miR-100:12-33]

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   a
ac    c     ga       ac   ca      u u uau 

>der-mir-311a (-19.50)   [der-miR-311a:50-71]

ua    gu       -a    auc  c u      -   cu 
  gaua  uuuucgg  cggu   ug g caauau uuc  u
  ||||  |||||||  ||||   || | |||||| |||  g
  cuau  aaaAGUC  GCCA   AC C GUUAUa aag  u
aa    --       CG    CUU  A -      u   au 

>der-mir-133 (-37.00)   [der-miR-133:54-75]

ug    -    ug             cauc  gu     -   uu 
  caac gcug  uguagcugguuga    gg  cagau cug  u
  |||| ||||  |||||||||||||    ||  ||||| |||   
  guug ugac  aUGUCGACCAACU    CC  GUUua gau  u
ua    g    cg             -UCC  UG     c   cc 

>der-mir-286 (-26.70)   [der-miR-286:64-86]

--         aaug    a   -    a     u    -   -aaa  a 
  uuaaaauug    gcga ugu cggu ugguc cuuu uuc    ga g
  |||||||||    |||| ||| |||| ||||| |||| |||    || g
  aauuuuaau    UGCU ACA GCCA AUCAG gaag gag    cu u
aa         aUCG    C   A    G     U    c   cuag  u 

>der-mir-280 (-26.10)   [der-miR-280:10-36]

--   -    --ua     U   G                --A      
  ugg cuuu    UGUAU UAC UUGCAUAUGAAAUGAU   uuuau 
  ||| ||||    ||||| ||| ||||||||||||||||   |||| a
  acc ggag    acgua aug gacguauauuuuauua   aaaug 
cg   u    cuga     u   -                gac      

>der-mir-92a (-38.00)   [der-miR-92a:55-76]

aa  ug   uu        a     -     u   c    -ug a 
  ua  aau  cccguagg cggga aggug caa guuu   c u
  ||  |||  |||||||| ||||| ||||| ||| ||||   | u
  au  uug  gggUAUCC GCCCU UUCAC GUU Caaa   g u
ua  gu   gc        G     G     -   A    uaa c 

>der-mir-306 (-49.40)   [der-miR-306:15-36] [der-miR-306*:52-73]

-g      c  ug  U       UU           --   - u 
  uccacu gg  gc CAGGUAC  AGUGACUCUCA  Aug c u
  |||||| ||  || |||||||  |||||||||||  ||| |  
  ggguga cc  CG GUCCGUG  UCACUGGGGGu  uac g u
ca      -  gu  U       UC           uu   a u 

>der-mir-316 (-29.00)   [der-miR-316:16-37]

      -    c   u           G   -A   G    ucau 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uua gcggaaaaagg gaa  gac gcaa    u
      u    c   u           -   ag   a    caac 

>der-mir-307 (-40.10)   [der-miR-307:56-75]

u        -   a         ccu  g       -u    uc 
 gucuugcu uug cucacucaa   gg ugugaug  uauu  g
 |||||||| ||| |||||||||   || |||||||  ||||  a
 caggacga agc GAGUGAGUU   CC ACACUac  augg  u
a        u   -         CCU  A       cu    ua 

>der-mir-14 (-28.30)   [der-miR-14:41-61]

        c    cg      c     gcu 
ugugggag gaga  gggacu acugu   u
|||||||| ||||  |||||| |||||   a
auAUCCUC CUCU  UUCUGA Ugaua   u
        U    UU      C     aau 

>der-mir-8 (-31.42)   [der-miR-8:53-75]

        cu uu -       -   g     c      uccuu 
aaggacau  g  c acaucuu acc ggcag auuaga     u
||||||||  |  | ||||||| ||| ||||| ||||||     u
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu     u
        -- cu C       A   A     A      caaua 

>der-mir-11 (-30.50)   [der-miR-11:48-68]

  a   gc         ucu      cc    u  acu 
gc cuu  caagaacuu   cuguga  ugcg gu   g
|| |||  |||||||||   ||||||  |||| ||    
cg gag  GUUCUUGAG   GACACU  ACgc cg   a
  c   uC         UCU      --    -  aaa 

>der-mir-13b-1 (-21.20)   [der-miR-13b:43-64]

   -ug           u      acu    uauu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    g
   uUG           C      ---    uaac 

>der-mir-281-2 (-32.80)   [der-miR-281-2*:15-36] [der-miR-281:60-82]

     u  gaa ug        -UA     C      caagu    a 
cgaau gu   a  AAGAGAGC   UCCGU GACAGU     uaau c
||||| ||   |  ||||||||   ||||| ||||||     ||||  
gcuua ca   U  UUCUCUCG   AGGUA CUGUca     guua c
     -  aua GU        UUA     -      -uaau    g 

>der-mir-275 (-42.90)   [der-miR-275:55-77]

aa    cc    u         -a    ug   gg     guuuu 
  gucu  uacc ugcgcgcua  ucag  acc  ggcug     u
  ||||  |||| |||||||||  ||||  |||  |||||      
  caga  gugg GCGCGCGAU  AGUC  UGG  CUgac     u
ua    cc    u         GA    CA   -A     auaua 

>der-mir-6-3 (-29.13)   [der-miR-6:53-74]

    a             g    a        uucgaaa 
caaa agaagggaacggu gcug ugauguag       c
|||| ||||||||||||| |||| ||||||||       u
guuu uUUUUUCUUGUCG UGAC ACUAUauu       c
    g             G    -        uaacacu 

>der-mir-9a (-29.00)   [der-miR-9a:10-32]

    -     U       UAU      G     -  gau 
gcua uguug CUUUGGU   CUAGCU UAUGA gu   a
|||| ||||| |||||||   |||||| ||||| ||    
cgau auaau gaagcca   gaucga auacu ca   a
    u     u       uuc      a     g  aua 

>der-mir-263a (-36.30)   [der-miR-263a:13-36]

ga     g   a  UA   G     GA   AU       --   - u 
  ucucg cac GU  AUG CACUG  AGA  UCACggg  gua c u
  ||||| ||| ||  ||| |||||  |||  |||||||  ||| |  
  agagc gug ua  uac gugau  ucu  agugccc  cau g u
ua     -   g  uc   g     uc   --       aa   a u 

>der-mir-9b (-30.80)   [der-miR-9b:15-37]

u   --u        cUC         UUU    G     ugugu 
 gca   auuauuug   UUUGGUGAU   AGCU UAUGg     a
 |||   ||||||||   |||||||||   |||| |||||      
 cgu   ugguaaac   aaaccauua   ucga auacc     u
a   uuu        caa         -uu    g     uugug 

>der-mir-34 (-40.00)   [der-miR-34:14-35]

ug   a  -   uu        U  U   C        u  ccaa    u 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug ag    ucau g
  ||| || |||  |||||||| || ||| |||||||| ||    |||| c
  cga ac gcg  gccgucac uc auc accgacac uc    agug u
--   -  a   cc        u  u   -        -  -aac    u 

>der-mir-282 (-41.60)   [der-miR-282:13-40]

a    -    -auaA           AC      U      ---U  auu 
 guuu ccuu     AUCUAGCCUCU  UAGGCU UGUCUG    gc   c
 |||| ||||     |||||||||||  |||||| ||||||    ||    
 caag ggaa     uggauuggaga  auccga acagac    cg   a
a    c    ccaug           au      u      uagc  aaa 

>der-mir-6-2 (-22.20)   [der-miR-6:47-68]

     cc       cu ug   c       uuau g 
uaacc  agggaac  c  cug ugauaua    u a
|||||  |||||||  |  ||| |||||||    |  
guugg  UUUCUUG  G  GAC ACUAUau    a a
     UU       UC GU   -       ccuc a 

>der-mir-2a-2 (-32.90)   [der-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g aac 

>der-mir-184 (-33.70)   [der-miR-184*:16-36] [der-miR-184:55-76]

cc    c  u  ua         -     U  -  CCG   gcau 
  ggug au cg  cCCUUAUCA UUCUC CG CC   ugu    u
  |||| || ||  ||||||||| ||||| || ||   |||     
  ccac ua gc  GGGAAUAGU AAGAG GC GG   aca    u
aa    -  u  uC         C     -  A  Uca   gaaa 

>der-mir-6-1 (-21.10)   [der-miR-6:47-68]

ag             ug c   c    ag uaau 
  uagagggaauagu  c gug ugua  u    a
  |||||||||||||  | ||| ||||  |    u
  gUUUUUCUUGUCG  G CAC AUau  a    a
au             GU A   U    cu uacu 

>der-mir-284 (-44.80)   [der-miR-284:64-92]

--         c              acuguguagccugugagggcaag 
  guugcaguu cuggaauuaaguug                       g
  ||||||||| ||||||||||||||                        
  cggcGUUAA GACCUUAGUUCAAC                       c
cc         C              GACUGAAGUcuucgucaugaguu 

>der-mir-285 (-31.30)   [der-miR-285:64-85]

--  ga       -a     ga    u      a    uaucaa   gccc 
  uc  gucgaag  acuga  ucga uggugc uaga      gaa    c
  ||  |||||||  |||||  |||| |||||| ||||      |||    a
  ag  uaguuuu  UGACU  AGCU ACCACG AUcu      cuu    c
aa  aa       CG     AA    U      -    ---caa   aacu 

>der-mir-279 (-36.40)   [der-miR-279:60-81]

au         u          g     c  uguu     uug   u 
  acuacuguu uuagugggug ggguc ag    ucaca   auu u
  ||||||||| |||||||||| ||||| ||    |||||   ||| c
  ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   uga u
cu         u          A     A  ----     uua   u 

>der-mir-263b (-36.50)   [der-miR-263b:16-36]

u     -acu      C        G G     U     -u      
 agcug    uugagu UUGGCACU G AGAAU CACag  ugauu 
 |||||    |||||| |||||||| | ||||| |||||  |||| u
 ucgac    aauuua aaccgugg c ucuug guguc  auuau 
-     aacu      a        g g     -     uu      

>der-mir-277 (-40.30)   [der-miR-277:59-81]

--   a g       gc  -   gu    -            c  aaa u 
  uug a guuuugg  ug cgu  cagg agugcauuugca ug   c a
  ||| | |||||||  || |||  |||| |||||||||||| ||   | u
  aac u caagacc  AC GCA  GUCU UCACGUAAAUgu ac   g c
cu   a g       uu  A   UG    A            -  gaa u 

>der-mir-318 (-24.90)   [der-miR-318:43-64]

u          c   c        uu   caca 
 uuaugggaua aca aguucagu  ugu    c
 |||||||||| ||| ||||||||  |||     
 aguACUCUAU UGU UCGGGUCA  acg    u
g          U   U        CU   aacu 

>der-mir-31a (-41.30)   [der-miR-31a:14-36]

        ua       A     U         UGAcguugaaaa 
uccguugg  aauUGGC AGAUG CGGCAUAGC            g
||||||||  ||||||| ||||| |||||||||            c
agguaacu  uugacug ucuac gucguaucg            g
        ug       a     -         cgagaaauuuuc 

>der-mir-2a-1 (-41.00)   [der-miR-2a:49-71]

         -      -         a    auauca  u 
gcugggcuc ucaaag ugguuguga augc      gc u
||||||||| |||||| ||||||||| ||||      || u
cgauuCGAG AGUUUC ACCGACACU Uacg      cg g
         U      G         A    -----g  c 

>der-mir-311b-1 (-29.30)   [der-miR-311b:48-69]

ca      -     u      g  u      --   au 
  auuuuc ggcug ggagug gc aguacu  gug  u
  |||||| ||||| |||||| || ||||||  |||  u
  ugaaAG CCGAC CCUUAC CG UUAUga  uac  u
ug      U     C      A  -      gu   aa 

>der-mir-274 (-42.90)   [der-miR-274:16-41]

ug              --       C  A  CU           gu      
  uguugcaguuucgU  UUUGUGA CG CA  AACGGGUAAUu  uuggc 
  ||||||||||||||  ||||||| || ||  |||||||||||  |||| c
  acgacguuaaagua  aaacacu gc gu  uugcucauuag  gaccg 
-a              cu       a  -  uu           --      

>der-mir-311c (-15.90)   [der-miR-311c:50-71]

ua    g     c  ac   auc  c u      -   cu 
  gaua uuuuu gg  ggu   ug g caauau uuc  u
  |||| ||||| ||  |||   || | |||||| |||  g
  cuau aaaAG CC  CCA   AC C GUUAUa aag  u
aa    -     U  GA   CUU  A -      u   au 

>der-mir-iab-4 (-25.20)   [der-miR-iab-4-5p:7-28] [der-miR-iab-4-3p:41-64]

    -aa            U    C   Ag  u 
ucgu   ACGUAUACUGAA GUAU CUG  ug a
||||   |||||||||||| |||| |||  || u
agca   UGCAUAUGACUU CAUA GGC  au c
    CAA            C    U   cu  c 

>der-mir-79 (-37.40)   [der-miR-79:57-78]

ag    -cuu    u        cgc       g     --   au 
  cugc    gcca ugcuuugg   uuuagcu uauga  uag  u
  ||||    |||| ||||||||   ||||||| |||||  |||  u
  gacg    cggu ACGAAACC   AGAUCGA AUacu  auc  a
ua    ucuu    U        AUU       A     uc   aa 

>der-mir-311b-2 (-29.30)   [der-miR-311b:48-69]

ca      -     u      g  u      --   au 
  auuuuc ggcug ggagug gc aguacu  gug  u
  |||||| ||||| |||||| || ||||||  |||  u
  ugaaAG CCGAC CCUUAC CG UUAUga  uac  u
ug      U     C      A  -      gu   aa 

>der-mir-125 (-31.70)   [der-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>der-mir-305 (-24.50)   [der-miR-305:8-30]

     cu U         U  G     CU  u  ggu 
caugu  A UGUACUUCA CA GUGCU  Gg gu   c
|||||  | ||||||||| || |||||  || ||    
guaua  u acaugaagu gu cacgg  cc ca   c
     ac c         u  a     --  -  aug 

>der-mir-281-1 (-32.51)   [der-miR-281-1*:15-36] [der-miR-281:58-80]

      ag  a           -UG     C      ccagaaac 
cgaaua  ug auaAAGAGAGC   UCCGU GACAGU        c
||||||  || |||||||||||   ||||| ||||||        a
gcuuau  au UGUUUCUCUCG   AGGUA CUGUca        u
      -a  a           UUA     -      cuauaauu 

>der-mir-314 (-34.10)   [der-miR-314:70-90]

u  u       g     u   au     uaguu    ---a       ca 
 cg aacuugu uggcu cga  guacc     gagg    agaaucc  u
 || ||||||| ||||| |||  |||||     ||||    |||||||   
 GC UUGAAUA ACCGA GCU  UAUgg     cucc    uuuuagg  g
G  -       -     -   --     ----u    auug       cu 

>der-mir-276a (-38.62)   [der-miR-276a:54-75]

cc      uug   uc    a     ag          uucau 
  ugguuu   cca  agcg gguau  aguuccuacg     u
  ||||||   |||  |||| |||||  ||||||||||     a
  accaga   ggu  UCGU CCAUA  UCAAGGAUgc     u
aa      --a   UC    G     CU          ucaaa 

>der-mir-278 (-37.20)   [der-miR-278:57-78]

gu      acgg     c       u     a  a     g   cc 
  aauggu    ugcga cggauga gguuc ca cgacc ugu  u
  ||||||    ||||| ||||||| ||||| || ||||| |||  u
  uuaccg    augUU GCCUGCU UCAGG GU GCUgg gca  u
gu      --ca     U       U     -  G     -   aa 

>der-mir-12 (-29.40)   [der-miR-12:7-29]

      UG     U    C          -  gccuu 
uacggu  AGUAU ACAU AGGUACUGGU gu     a
||||||  ||||| |||| |||||||||| ||      
gugccg  ucaua ugua uucaugacca ca     a
      ca     c    -          a  accaa 

>der-mir-4 (-22.90)   [der-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag    - uu 
u  caau a  uuc  uggu guc agc     guga c  u
|  |||| |  |||  |||| ||| |||     |||| |   
g  guug u  aAG  ACCA CAG UCG     UAcu g  u
 gu    c ug   UU    A   A   --AAA    a uc 

>der-bantam (-25.50)   [der-bantam:52-74]

au     uac    c          uu      g   -  uu 
  uugac   gaaa cgguuuucga  ugguuu acu gu  u
  |||||   |||| ||||||||||  |||||| ||| ||  u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga ca  c
--     ---    A          UU      G   a  ua 

>der-mir-1 (-36.20)   [der-miR-1:54-75]

ca   ugu  --ga            c        a   -   au 
  gcc   ga    guuccaugcuuc uugcauuc aua guu  a
  |||   ||    |||||||||||| |||||||| ||| |||  c
  cgg   cu    cGAGGUAUGAAG AAUGUAAG Uau cga  u
ag   --u  aaag            A        G   a   ac 

>der-mir-2b-1 (-28.90)   [der-miR-2b:48-70]

  u    ug         -    g    ----c      u 
cu caac  ucuucaaag uggc guga     auguug c
|| ||||  ||||||||| |||| ||||     ||||||  
gg guug  AGGAGUUUC ACCG CACU     uauaac a
  c    CG         G    A    AUacu      g 

>der-mir-312-1 (-23.20)   [der-miR-312:43-64]

gc      u   ac    a     u  -  auu 
  uucggu cgu  cagg gcaau cu gc   u
  |||||| |||  |||| ||||| || ||    
  AGGCCG GCA  GUUC CGUUA ga cg   u
uu      -   GA    A     U  u  aau 

>der-mir-7 (-31.90)   [der-miR-7:15-37]

        u     U       U  U     U      uggu u 
gaguguau ccgua GGAAGAC AG GAUUU GUUGUu    c u
|||||||| ||||| ||||||| || ||||| ||||||    |  
uuuacgug ggcau ucuucug uc cuaaa uaacaa    g u
        c     -       u  c     -      uaau g 

>der-mir-3 (-28.70)   [der-miR-3:43-64]

    c         uc    g    u    uuc 
gauc ugggaugca  uugu cagu augu   u
|||| |||||||||  |||| |||| ||||   a
cuag ACUCUGUGU  AACG GUCA Uaca   u
    a         GA    G    C    cuc 

>der-mir-315 (-32.49)   [der-miR-315:12-33]

       auaa   UG          A       cuauuau 
cacuuau    UUU  AUUGUUGCUC GAAAGCc       c
|||||||    |||  |||||||||| |||||||        
gugaaua    aaa  uaauaacgag cuuucgg       u
       gacc   gu          -       ucgacaa 

>der-mir-2c (-27.30)   [der-miR-2c:63-85]

   uau    c  u       -      aag     aagaaagauauuucu 
ucg   cuua uu caauguc aucaaa   ggcug               g
|||   |||| || ||||||| ||||||   |||||                
agc   gagu aa guuaCGG UAGUUU   CCGAC               c
   uac    -  c       G      CGA     ACUAUgcuaaguuua 

>der-mir-317 (-38.20)   [der-miR-317:56-79]

    --a  u         aua    --     c      u aa  a 
augc   ac gccauuggg   cacc  cugug ucgcuu g  ug a
||||   || |||||||||   ||||  ||||| |||||| |  || a
ugcg   ug cggUGACCU   GUGG  GACAC AGUgaa c  ac u
    guu  c         AUG    UC     A      - ga  g 

>der-mir-276b (-39.30)   [der-miR-276b:57-78]

ac   -      uuua   uc    a     a           uuccu 
  cga agucuu    cca  agcg gguau gaguuccuacg     a
  ||| ||||||    |||  |||| ||||| |||||||||||      
  gcu ucagga    ggu  UCGU CCAUA UUCAAGGAUgc     u
ca   g      ----   UC    G     A           ugacu 

>der-mir-92b (-33.64)   [der-miR-92b:57-78]

aa  u   - uga         u c c     uu      ugccuu 
  cg cac c   uguaggccg g c agugc  auuugu      u
  || ||| |   ||||||||| | | |||||  ||||||       
  gc gug g   aCGUCCGGC C G UCACG  UAAaca      u
ac  u   a -ug         C U A     -U      uaaagc 

>der-mir-87 (-33.00)   [der-miR-87:59-79]

--  u     auu        -u  c     g     ------uu   a 
  ca auuuc   cgcgccug  au uugcu aaccg        gcc u
  || |||||   ||||||||  || ||||| |||||        ||| u
  gu uaaag   GUGUGGAC  UA AACGA UUggc        cgg a
uu  u     agu        UU  A     G     cuagcauc   u 

>der-mir-33 (-33.40)   [der-miR-33:15-35]

ca      a    a  -G       U   C C        ucc a 
  gagaug cacg AG  UGCAUUG AGU G AUUGucug   c a
  |||||| |||| ||  ||||||| ||| | ||||||||   |  
  cuuuac gugu uc  acgugac uca c uaacggac   g u
ca      -    c  ga       u   a a        uuc u 

>der-mir-210 (-37.82)   [der-miR-210:52-72]

aa   -g     ugc        gc   -         uuaga 
  ggu  cuuau   agcugcug  cac ugcacaaga     c
  |||  |||||   ||||||||  ||| |||||||||     u
  ccg  gaaug   UCGGCGAC  GUG GCGUGUUcu     u
ua   ga     uuA        -A   U         cagaa 

>der-mir-124 (-31.30)   [der-miR-124:49-71]

ua     uu   c      c      ag    a    uau 
  cguuu  cuc ugguau cacugu  gccu uaug   u
  |||||  ||| |||||| ||||||  |||| ||||   u
  gcaag  gaG ACCGUA GUGGCG  CGGA AUac   c
ac     -c   A      A      CA    -    cac 

>der-mir-312-2 (-22.20)   [der-miR-312:46-67]

gc      u   ac    a     u  -  auuu 
  uucggu cgu  cagg gcaau cu gc    u
  |||||| |||  |||| ||||| || ||    u
  AGGCCG GCA  GUUC CGUUA ga cg    u
uu      -   GA    A     U  u  aauu 

>der-mir-304 (-33.30)   [der-miR-304:12-34]

    ca    a       AAU       U     c -   u  g 
gcag  uuga UAAUCUC   UUGUAAA GUGAG g guu ga c
||||  |||| |||||||   ||||||| ||||| | ||| ||  
cguc  agcu guuagag   aacguuu cacuc c cag uu c
    ag    c       guu       -     a g   u  a 

>der-mir-10 (-28.70)   [der-miR-10:9-29]

     ucu   -  G    U             auacu 
cuacg   ACC CU UAGA CCGAAUUUGUuuu     a
|||||   ||| || |||| |||||||||||||      
ggugu   ugg ga aucu ggcuuaaacagga     g
     guu   a  g    u             auuuc 

>der-mir-13a (-27.20)   [der-miR-13a:48-69]

    u     c      -        a   --uc  cu 
uacg aacuc ucaaag gguuguga aug    ga  a
|||| ||||| |||||| |||||||| |||    ||   
gugc uUGAG AGUUUU CCGACACU Uac    cu  u
    u     U      A        A   ucau  au 

>der-mir-288 (-32.02)   [der-miR-288:66-88]

     a    g aauuagcg   c       --u       auaauuaa    g 
cgguc uguc u        gag ucggcgu   gccggcg        ugac g
||||| |||| |        ||| |||||||   |||||||        ||||  
gccgg acaG A        CUU AGCUGUA   Ugguugc        acug u
     c    G ---CUUUA   U       CUU       --------    g 

>der-mir-219 (-34.60)   [der-miR-219:19-41]

ua    -g     u   ua    U     AA           ----   a 
  auuc  auuuu agc  UGAU GUCCA  CGCAAUUCUUG    uug u
  ||||  ||||| |||  |||| |||||  |||||||||||    ||| a
  uaag  uaaag ucg  gcua cgggu  gcguugggaac    aac u
ca    aa     c   gc    -     ca           uuau   u 

>der-mir-310a (-32.50)   [der-miR-310a:53-74]

-    -aa       c   a    uc     u       -    u 
 acac   auauuug agg cggg  gugug caaugua uuga c
 ||||   ||||||| ||| ||||  ||||| ||||||| ||||  
 ugug   uguaaaU UCC GCCC  CACAC GUUAUau gauu u
u    acc       U   C    UU     -       c    c 

>der-mir-2b-2 (-36.90)   [der-miR-2b:54-76]

       a          -         a   --uuu  cuu 
uuguguc uucuucaaag ugguuguga aug     gc   u
||||||| |||||||||| ||||||||| |||     ||    
agcgcag GAGGAGUUUC ACCGACACU Uac     cg   u
       C          G         A   uuauc  uau 

>der-mir-9c (-27.60)   [der-miR-9c:13-34]

    uu    uuU         UCU    G     u  uuc   c 
auuu  gcug   CUUUGGUAU   AGCU UAGAu gu   gcg a
||||  ||||   |||||||||   |||| ||||| ||   ||| c
uaaa  cgac   gaaaccaua   ucga aucua ua   ugu a
    uu    cuc         uuu    a     c  -ua   u 

>der-mir-289 (-32.20)   [der-miR-289:15-40]

ag     a  -aa      UA        G  CCUGCG          cu 
  uuuac gu   aaUAAA  UUUAAGUG AG      ACUccagucc  c
  ||||| ||   ||||||  |||||||| ||      ||||||||||  u
  aaaug ca   uuguuu  gaguucac uc      uggggucagg  g
ga     -  cgg      gc        -  ----aa          ca 

>dgr-mir-277 (-37.72)   [dgr-miR-277:56-78]

ca       gc  -   gu    -            --  gaaac 
  guuuugg  ug cgu  cagg agugcauuugca  cu     a
  |||||||  || |||  |||| ||||||||||||  ||     u
  caagacc  AC GCA  GUCU UCACGUAAAUgu  ga     u
ug       uu  A   UG    A            uc  aaguc 

>dgr-mir-100 (-27.10)   [dgr-miR-100:12-33]

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   u
ac    c     ga       ac   ca      u u uau 

>dgr-mir-305 (-24.40)   [dgr-miR-305:8-30]

     cu U         U  G     CU   guca 
caugu  A UGUACUUCA CA GUGCU  Ggu    c
|||||  | ||||||||| || |||||  |||     
guaua  u acaugaagu gu cacgg  cca    u
     ac c         u  a     -c   augc 

>dgr-bantam (-26.90)   [dgr-bantam:52-74]

au     uac    c          uu      g   -   u 
  uugac   gaaa cgguuuucga  ugguuu acu guu u
  |||||   |||| ||||||||||  |||||| ||| ||| u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga cag c
--     ---    A          UU      G   a   a 

>dgr-mir-12 (-29.40)   [dgr-miR-12:7-29]

      UG     U    C          -  gccau 
uacggu  AGUAU ACAU AGGUACUGGU gu     u
||||||  ||||| |||| |||||||||| ||      
gugccg  ucaua ugua uucaugacca ca     u
      ca     c    -          a  accaa 

>dgr-mir-219 (-32.00)   [dgr-miR-219:18-40]

-a    -g     u   ua    U     AAC          -----   a 
  auuc  auuuu agc  UGAU GUCCA   GCAAUUCUUG     uug u
  ||||  ||||| |||  |||| |||||   ||||||||||     |||  
  uaag  uaaag ucg  gcua cgggu   cguugggaac     aac u
ca    ag     c   gc    -     cua          ucaaa   u 

>dgr-mir-307 (-38.10)   [dgr-miR-307:56-75]

         -   a         ccu  g       -u    uc 
ugucuugcu uug cucacucaa   gg ugugaug  uauu  g
||||||||| ||| |||||||||   || |||||||  ||||  a
auaggacga agc GAGUGAGUU   CC ACACUac  augg  u
         u   -         CCU  A       cu    uu 

>dgr-mir-287-1 (-18.10)   [dgr-miR-287:45-65]

ug    ---a   uu aa     gc           a 
  caua    ugc  g  auuuu  acacauuuaca u
  ||||    |||  |  |||||  ||||||||||| a
  gugu    ACG  U  UAAAA  UGUGUaaaugu u
-a    caaC   UU GC     GU           u 

>dgr-mir-263b (-31.40)   [dgr-miR-263b:9-29]

ca     uC        G G     U     uug   a 
  uuaca  UUGGCACU G AGAAU CACag   guu u
  |||||  |||||||| | ||||| |||||   |||  
  aaugu  aaccgugg c ucuug guguc   uaa a
--     ca        g g     -     uua   u 

>dgr-mir-308 (-24.10)   [dgr-miR-308:42-63]

           u       u    -   auu 
cucgcaguaua uuuugug uuug uuu   u
||||||||||| ||||||| |||| |||    
GAGUGUCAUAU AGGACAC AAac aaa   u
           U       U    u   agu 

>dgr-mir-184 (-37.00)   [dgr-miR-184*:16-36] [dgr-miR-184:55-76]

cc    c  u  ua         -     U  -  --CC      a 
  ggug au cg  cCCUUAUCA UUCUC CG CC    Gugugg u
  |||| || ||  ||||||||| ||||| || ||    ||||||  
  ccac ua gc  GGGAAUAGU AAGAG GC GG    cauauc a
aa    -  u  uC         C     -  A  Ucaa      a 

>dgr-mir-2b (-37.30)   [dgr-miR-2b:54-76]

       c          -         a   --uuu  cuu 
uuguguc uucuucaaag ugguuguga aug     gc   u
||||||| |||||||||| ||||||||| |||     ||    
agcacag GAGGAGUUUC ACCGACACU Uac     cg   u
       C          G         A   ucauc  uau 

>dgr-mir-6-2 (-28.25)   [dgr-miR-6:53-74]

      c       u  ug   c       caaccauau 
uaacca agggaac gc  cug ugauaua         u
|||||| ||||||| ||  ||| |||||||          
guuggU UUUCUUG CG  GAC ACUAUau         u
      U       U  GU   -       cagcacaua 

>dgr-mir-5-1 (-27.00)   [dgr-miR-5:5-27]

--    -       C               ---  uuca 
  gcua AAAGGAA GAUCGUUGUGAUAUG   cg    u
  |||| ||||||| |||||||||||||||   ||     
  cgau uuuccuu uuagugacacuauac   gc    u
cg    a       -               auu  uaaa 

>dgr-mir-92a (-32.90)   [dgr-miR-92a:53-74]

--           gc   a     -     u   c    --ug a 
  auaaauugcuu  agg cggga aggug caa guuu    c u
  |||||||||||  ||| ||||| ||||| ||| ||||    | u
  uguuuggcgag  UCC GCCCU UUCAC GUU Caaa    g u
cg           UA   G     G     -   A    cuaa u 

>dgr-mir-6-4 (-21.10)   [dgr-miR-6:46-67]

ug            au      -------cu     u 
  uaaagagaauag  gcugug         guaug u
  ||||||||||||  ||||||         ||||| g
  gUUUUUCUUGUC  UGACAC         uaugc a
au            GG      UAUaucugu     a 

>dgr-mir-11 (-31.90)   [dgr-miR-11:53-73]

ca    u         ucu      cu    ugaac    a 
  cucg caagaacuc   cuguga  ugcg     uuuc u
  |||| |||||||||   ||||||  ||||     ||||  
  gagu GUUCUUGAG   GACACU  ACgc     aaag g
gc    C         UCU      --    ---ua    u 

>dgr-mir-276b (-40.40)   [dgr-miR-276b*:20-42] [dgr-miR-276b:61-82]

aa   -     auuua   uU    A     A           -----   a 
  cga agucu     cca  AGCG GGUAU GAGUUCCUACG     ugc a
  ||| |||||     |||  |||| ||||| |||||||||||     ||| a
  gcu ucggg     ggu  UCGU CCAUA UUCAAGGAUgc     acg u
ca   g     ----a   UC    G     A           uaaua   u 

>dgr-mir-276a (-32.76)   [dgr-miR-276a*:16-38] [dgr-miR-276a:56-77]

cc      uug   uC    A     AG        C uuaaau 
  ugguuu   cca  AGCG GGUAU  AGUUCCUA G      u
  ||||||   |||  |||| |||||  |||||||| |      u
  accaga   ggu  UCGU CCAUA  UCAAGGAU c      a
aa      --a   UC    G     CU        a ucauaa 

>dgr-mir-309-1 (-25.90)   [dgr-miR-309:51-72]

              c ug      uu   -ca  uuu 
auuauauggcaaac u  uucagu  uga   ac   g
|||||||||||||| |  ||||||  |||   ||   u
uaauAUGCUGUUUG A  GGGUCA  acu   ug   u
              A GU      CU   acg  ucu 

>dgr-mir-iab-4 (-26.50)   [dgr-miR-iab-4-5p:7-28] [dgr-miR-iab-4-3p:41-64]

    -a             U    C   Ag  u 
ucgu  uACGUAUACUGAA GUAU CUG  ug a
||||  ||||||||||||| |||| |||  || u
agca  AUGCAUAUGACUU CAUA GGC  au c
    CA             C    U   cu  c 

>dgr-mir-3-1 (-22.00)   [dgr-miR-3:43-64]

--           c  ua    a   --uug  u 
  ugggaugcauu ug  cagu aug     ac c
  ||||||||||| ||  |||| |||     ||  
  ACUCUGUGUGA AC  GUCA Uac     ug u
aa           A  GG    C   caaaa  u 

>dgr-mir-285 (-28.99)   [dgr-miR-285:66-87]

--    au     a     ga    u      a    uaucguccaagaa 
  ucaa  ugaag acuga  ucga uggugc uaga             u
  ||||  ||||| |||||  |||| |||||| ||||              
  gguu  guuuC UGACU  AGCU ACCACG AUcu             a
aa    au     G     AA    U      -    uaacuuuaauuua 

>dgr-mir-9b (-30.80)   [dgr-miR-9b:15-37]

u   --u        cUC         UUU      A   ugugc 
 gca   auuauuug   UUUGGUGAU   AGCUCU UGg     g
 |||   ||||||||   |||||||||   |||||| |||      
 cgu   ugguaaac   aaaccauua   ucgaga acc     c
a   uuu        caa         -uu      c   uaaua 

>dgr-mir-79 (-31.04)   [dgr-miR-79:49-70]

uu    uc       cgc       g     uagauu 
  gccg  gcuuugg   uuuagcu uauga      u
  ||||  |||||||   ||||||| |||||       
  cggc  CGAAACC   AGAUCGA AUacu      g
cg    UA       AUU       A     ucauaa 

>dgr-mir-318 (-25.21)   [dgr-miR-318:44-65]

u          c  c         uuuguca     c 
 uuaugggaua ac aaguucagu       gaugu c
 |||||||||| || |||||||||       |||||  
 aauACUCUAU UG UUCGGGUCA       CUacg a
g          U  U         -------     a 

>dgr-mir-31a (-35.90)   [dgr-miR-31a:14-36]

        ug       A     U         ---------  A    u 
ucuguugg  aauUGGC AGAUG CGGCAUAGC         UG cguu g
||||||||  ||||||| ||||| |||||||||         || ||||  
agguaacu  uugacug ucuac gucguaucg         ac gcga a
        ua       a     -         cgauauucu  -    a 

>dgr-mir-317 (-38.30)   [dgr-miR-317:56-79]

ug   -uu        g    ug  --     c      u aa     
  caa   gccacugg auau  cc  cugug ucgcuu g  uauu 
  |||   |||||||| ||||  ||  ||||| |||||| |  ||| g
  guu   cggUGACC UAUG  GG  GACAC AGUgaa c  augu 
cg   ugc        -    GU  UC     A      - ga     

>dgr-mir-3-2 (-22.00)   [dgr-miR-3:43-64]

--           c  ua    a   --uug  u 
  ugggaugcauu ug  cagu aug     ac c
  ||||||||||| ||  |||| |||     ||  
  ACUCUGUGUGA AC  GUCA Uac     ug u
aa           A  GG    C   caaaa  u 

>dgr-mir-281-1 (-32.30)   [dgr-miR-281-1*:15-36] [dgr-miR-281:56-78]

      aguga           -UG     C      ccag  ua 
cgaaua     auaAAGAGAGC   UCCGU GACAGU    ua  a
||||||     |||||||||||   ||||| ||||||    ||  a
gcuuau     UGUUUCUCUCG   AGGUA CUGUca    au  u
      -agua           UUA     -      --ua  uu 

>dgr-mir-9a (-25.80)   [dgr-miR-9a:9-31]

cu      U       UAU      G     -  gau 
  auguug CUUUGGU   CUAGCU UAUGA gu   a
  |||||| |||||||   |||||| ||||| ||    
  uauaau gaagcca   gaucga auacu ca   a
au      u       uuc      a     g  aua 

>dgr-mir-6-6 (-24.63)   [dgr-miR-6:50-71]

aa          -  u     c        uucauga 
  ggaagagaac gc cgcug ugauguag       u
  |||||||||| || ||||| ||||||||       u
  uUUUUUCUUG CG GUGAC ACUAUauu       c
ug          U  -     -        uuauaaa 

>dgr-mir-286-2 (-28.43)   [dgr-miR-286:70-92]

--         aaug    u   -    a         uugaaccuaaacuc      c 
  uuaaaauua    gcga ugu cggu uggucgcuu              uauaua a
  |||||||||    |||| ||| |||| |||||||||              |||||| a
  aauuuuaau    UGCU ACA GCCA AUCAGUgaa              auauau u
aa         aUCG    C   A    G         --------------      a 

>dgr-mir-316 (-28.60)   [dgr-miR-316:15-36]

-a    -    c   u           G   -A   G    uua 
  guuc uagu gau UGUCUUUUUCC CUU  CUG CGuu   u
  |||| |||| ||| ||||||||||| |||  ||| ||||   u
  uaag auca uua gcggaaaaagg gaa  gac gcaa   g
ug    u    u   u           -   ag   a    cga 

>dgr-mir-306 (-30.70)   [dgr-miR-306:5-26]

cu  U       UU            --uucaa  uu 
  gc CAGGUAC  AGUGACUCUCAA       ca  g
  || |||||||  ||||||||||||       ||   
  ug guccgug  ucgcugggaguu       gu  u
gu  u       uc            uccgcac  ua 

>dgr-mir-8 (-31.93)   [dgr-miR-8:57-79]

        cu uu -       -   g     c      uucuuga 
aaggacau  g  c acaucuu acc ggcag auuaga       u
||||||||  |  | ||||||| ||| ||||| ||||||       u
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu       u
        -- cu C       A   A     A      uaauaaa 

>dgr-mir-4-2 (-25.50)   [dgr-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag      u 
u  caau a  uuc  uggu guc agc     gugauu c
|  |||| |  |||  |||| ||| |||     |||||| u
g  guug u  aAG  ACCA CAG UCG     UAcuag c
 gu    c ug   UU    A   A   --AAA      u 

>dgr-mir-286-1 (-28.43)   [dgr-miR-286:70-92]

--         aaug    u   -    a         uugaaccuaaacuc      c 
  uuaaaauua    gcga ugu cggu uggucgcuu              uauaua a
  |||||||||    |||| ||| |||| |||||||||              |||||| a
  aauuuuaau    UGCU ACA GCCA AUCAGUgaa              auauau u
aa         aUCG    C   A    G         --------------      a 

>dgr-mir-304 (-28.40)   [dgr-miR-304:12-34]

    ca    a       AAU       U    --   a   uua 
gcag  uuga UAAUCUC   UUGUAAA GUGA  Gcg uua   a
||||  |||| |||||||   ||||||| ||||  ||| |||   g
cguu  agcu guuagag   aacguuu cacu  cgc agu   a
    ag    c       guu       -    ca   -   uua 

>dgr-let-7-1 (-34.20)   [dgr-let-7:11-31]

  u      uU   G                 -  auc 
uc ggcaaa  GAG UAGUAGGUUGUAUAGUa gu   u
|| ||||||  ||| ||||||||||||||||| ||   a
ag ucguuu  uuc aucguucgacauaucau cg   u
  u      cu   g                 a  auc 

>dgr-mir-6-1 (-21.10)   [dgr-miR-6:46-67]

ug            au      -------cu     u 
  uaaagagaauag  gcugug         guaug u
  ||||||||||||  ||||||         ||||| g
  gUUUUUCUUGUC  UGACAC         uaugc a
au            GG      UAUaucugu     a 

>dgr-mir-278 (-37.20)   [dgr-miR-278:58-79]

-u      acgg     c       c     a  a      u c   u 
  gauggu    ugcga cggauga gguuc ca cgaccg g uua u
  ||||||    ||||| ||||||| ||||| || |||||| | |||  
  uuaccg    augUU GCCUGCU UCAGG GU GCUggu c aau u
gu      --ca     U       U     -  G      - -   u 

>dgr-mir-314 (-29.10)   [dgr-miR-314:56-76]

u  u       g     u   au      ggcua      gu 
 cg aacuugu uggcu cga  guaccu     aggaaa  u
 || ||||||| ||||| |||  ||||||     ||||||   
 GC UUGAAUA ACCGA GCU  UAUgga     uccuuu  g
G  -       -     -   --      -----      ag 

>dgr-mir-309-2 (-25.90)   [dgr-miR-309:51-72]

              c ug      uu   -ca  uuu 
auuauauggcaaac u  uucagu  uga   ac   g
|||||||||||||| |  ||||||  |||   ||   u
uaauAUGCUGUUUG A  GGGUCA  acu   ug   u
              A GU      CU   acg  ucu 

>dgr-mir-279 (-35.96)   [dgr-miR-279:58-79]

gu                    a     c  uguu     uuguuu 
  auuacuguuuuuagugggug ggguc ag    ucaca      a
  |||||||||||||||||||| ||||| ||    |||||      u
  ugauggcaaaAAUUACUCAC CCUAG UC    AGUgu      u
cu                    A     A  ----     uuaugu 

>dgr-mir-287-2 (-18.10)   [dgr-miR-287:45-65]

ug    ---a   uu aa     gc           a 
  caua    ugc  g  auuuu  acacauuuaca u
  ||||    |||  |  |||||  ||||||||||| a
  gugu    ACG  U  UAAAA  UGUGUaaaugu u
-a    caaC   UU GC     GU           u 

>dgr-mir-288 (-36.21)   [dgr-miR-288:65-87]

-           -------   ua  -  -u  ag     ag ug   a  a 
 ggccgugucgu       aau  gc ug  gc  aacgu  c  gcg ua u
 |||||||||||       |||  || ||  ||  |||||  |  ||| || u
 ccggcacaGUA       UUA  UG AC  Ug  uugca  g  ugc gu a
g           CUUUACU   GC  U  UU  -g     cu gu   a  a 

>dgr-mir-10 (-30.30)   [dgr-miR-10:9-29]

     ucu   -  G    U           g acacu 
ccacg   ACC CU UAGA CCGAAUUUGUu u     a
|||||   ||| || |||| ||||||||||| |      
ggugu   ugg ga aucu ggcuuaaacag a     g
     guu   a  g    u           g auuuc 

>dgr-mir-14 (-28.50)   [dgr-miR-14:41-61]

        c    cg      c      cu 
ugugggag gaga  gggacu acugug  u
|||||||| ||||  |||||| ||||||  u
auAUCCUC CUCU  UUCUGA Ugauau  u
        U    UU      C      au 

>dgr-mir-6-5 (-28.25)   [dgr-miR-6:53-74]

      c       u  ug   c       caaccauau 
uaacca agggaac gc  cug ugauaua         u
|||||| ||||||| ||  ||| |||||||          
guuggU UUUCUUG CG  GAC ACUAUau         u
      U       U  GU   -       cagcacaua 

>dgr-mir-33 (-37.60)   [dgr-miR-33:15-35]

ag      u    a  -G           C C      -   c  a 
  gagcug cacg AG  UGCAUUGUAGU G AUUGuc ugu ca a
  |||||| |||| ||  ||||||||||| | |||||| ||| || a
  cuugac gugc uc  acgugacguca c uaacgg gua gu a
ca      -    c  ga           a a      c   c  u 

>dgr-mir-315 (-30.50)   [dgr-miR-315:12-33]

    cauauaa               A       uuucac 
cgcu       UUUUGAUUGUUGCUC GAAAGCc      u
||||       ||||||||||||||| |||||||      u
gcga       aaagcuaauaaugag cuuucgg      g
    auaaacc               -       uucaca 

>dgr-mir-13b-1 (-21.20)   [dgr-miR-13b:43-64]

   -ug           c      ccu    uauu 
cca   ucguuaaaaug uuguga   uaug    u
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    u
   uUG           C      ---    uaua 

>dgr-mir-9c (-26.50)   [dgr-miR-9c:13-34]

    uu    uuU         UCU    G     u uuu uau 
auuu  gcug   CUUUGGUAU   AGCU UAGAu g   c   a
||||  ||||   |||||||||   |||| ||||| |   |    
uaaa  cgac   gaaaccaua   ucga aucua c   g   u
    uu    cuc         uuu    a     - uau uuc 

>dgr-mir-2a-1 (-34.91)   [dgr-miR-2a:52-74]

    c    -      -         a    auuuuuga 
gcug gcuc ucaaag ugguuguga augc        a
|||| |||| |||||| ||||||||| ||||        a
cgau CGAG AGUUUC ACCGACACU Uacg        g
    u    U      G         A    cgcguuuc 

>dgr-mir-87 (-30.20)   [dgr-miR-87:60-80]

-  u     auu        -u  c     g    ----------     c 
 ca auuuc   cgcgccug  au uugcu aacc          guuac a
 || |||||   ||||||||  || ||||| ||||          |||||  
 gu uaaag   GUGUGGAC  UA AACGA UUgg          cagug u
u  u     agu        UU  A     G    ccuaaaccua     u 

>dgr-mir-1 (-35.10)   [dgr-miR-1:53-74]

--   uuu  --ga            c        a   -  a  u 
  gcc   ga    guuccaugcuuc uugcauuc aua gu ua a
  |||   ||    |||||||||||| |||||||| ||| || ||  
  cgg   cu    cGAGGUAUGAAG AAUGUAAG Uau cg au a
ag   --u  aaag            A        G   a  a  a 

>dgr-mir-125-1 (-31.70)   [dgr-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dgr-mir-284 (-43.20)   [dgr-miR-284:64-92]

--         c              a   uguagcc      agga  -  u 
  guugcaguu cuggaauuaaguug cug       uguaag    ag gc u
  ||||||||| |||||||||||||| |||       ||||||    || ||  
  cggcGUUAA GACCUUAGUUCAAC GAC       ACauuc    uc cg g
cu         C              -   ---UGAA      ---g  a  u 

>dgr-mir-6-3 (-24.63)   [dgr-miR-6:50-71]

aa          -  u     c        uucauga 
  ggaagagaac gc cgcug ugauguag       u
  |||||||||| || ||||| ||||||||       u
  uUUUUUCUUG CG GUGAC ACUAUauu       c
ug          U  -     -        uuauaaa 

>dgr-mir-4-1 (-25.50)   [dgr-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag      u 
u  caau a  uuc  uggu guc agc     gugauu c
|  |||| |  |||  |||| ||| |||     |||||| u
g  guug u  aAG  ACCA CAG UCG     UAcuag c
 gu    c ug   UU    A   A   --AAA      u 

>dgr-mir-31b (-33.30)   [dgr-miR-31b:14-35]

     -    aau     A     UC  A       -aca  a   ----   -      uc   a 
caaau aaug   uUGGC AGAUG  GG AUAGCUG    gc caa    gau cacaaa  aag a
||||| ||||   ||||| |||||  || |||||||    || |||    ||| ||||||  |||  
guuua uuac   aacug ucuac  cc uaucggc    ug guu    uua guguuu  uuu a
     c    guu     a     -u  g       gaca  a   auuu   u      ua   c 

>dgr-mir-210 (-36.46)   [dgr-miR-210:52-72]

--  -ag     ugg        gc   -         uuagau 
  gg   cuuau   agcugcug  cac ugcacaaga      u
  ||   |||||   ||||||||  ||| |||||||||      c
  cc   gaaug   UCGGCGAC  GUG GCGUGUUcu      a
ga  aga     uuA        -A   U         cagaaa 

>dgr-mir-125-2 (-31.70)   [dgr-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dgr-mir-282 (-36.05)   [dgr-miR-282:10-37]

-u   --uuauaA           AC      U      Ugcacuuu 
  ucc        AUCUAGCCUCU  UAGGCU UGUCUG        u
  |||        |||||||||||  |||||| ||||||        u
  agg        uggauuggaga  auccga acagac        c
cu   uaaacaug           gu      u      uaacuuaa 

>dgr-mir-124 (-34.40)   [dgr-miR-124:57-79]

uc  uu   -a     uu   c      c      ag    c    -  u 
  gu  ggu  cguuu  cuc ugguau cacugu  gccu uaug uu u
  ||  |||  |||||  ||| |||||| ||||||  |||| |||| ||  
  ca  uca  gcaag  gaG ACCGUA GUGGCG  CGGA AUac ag u
-a  uc   aa     -c   A      A      CA    -    c  u 

>dgr-mir-2a-2 (-32.90)   [dgr-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g agc 

>dgr-mir-13b-2 (-25.90)   [dgr-miR-13b:49-70]

uu   g       u  a      gc    uu     a 
  ggc cgucaaa ug cuguga  uaug  guugc g
  ||| ||||||| || ||||||  ||||  |||||  
  uUG GCAGUUU AC GACACU  AUac  uaaug u
gu   A       U  C      --    -u     u 

>dgr-mir-280 (-20.10)   [dgr-miR-280:5-31]

uu      UU   G                --A      
  uaUGUA  UAC UUGCAUAUGAAAUGAU   uuuau 
  ||||||  ||| ||||||||||||||||   |||| a
  guacau  aug gacguauauuuuauua   aaaug 
ac      --   -                gac      

>dgr-mir-13a (-27.90)   [dgr-miR-13a:47-68]

u   u     u      -        aa     g au 
 gcg aacuc ucaagg gguuguga  ugugg u  u
 ||| ||||| |||||| ||||||||  ||||| |  a
 ugc uUGAG AGUUUU CCGACACU  AUacu a  u
g   u     U      A        --     g ac 

>dgr-mir-283 (-29.60)   [dgr-miR-283:15-35]

cc     uc      AA           U         agcaaugcc 
  gauuc  aaaggU  AUAUCAGCUGG AAUUCUggg         a
  |||||  ||||||  ||||||||||| |||||||||         a
  uuaag  uuuuca  uaugguugacu uuaaggcuc         a
--     uu      gc           -         acaaaguau 

>dgr-mir-34 (-36.20)   [dgr-miR-34:14-35]

ug   a  -   uu        U  U   C        --ug c a 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug    g c a
  ||| || |||  |||||||| || ||| ||||||||    | |  
  cga ac gcg  gccgucac uc auc accgacac    c g c
--   -  a   cc        u  u   -        uaaa a u 

>dgr-mir-133 (-35.70)   [dgr-miR-133:55-76]

ua    -     a             cauc  gu     -  auu 
  caac gcugu uguagcugguuga    gg  cagau cu   u
  |||| ||||| |||||||||||||    ||  ||||| ||   a
  guug ugacg aUGUCGACCAACU    CC  GUUua ga   u
ua    g     -             -UCC  UG     u  gcu 

>dgr-mir-263a (-36.00)   [dgr-miR-263a:12-35]

--      g   a  UA   G     GA   AU       -  uau 
  aucucg cac GU  AUG CACUG  AGA  UCACggg gu   u
  |||||| ||| ||  ||| |||||  |||  ||||||| ||   u
  uagggc gug ua  uac gugau  ucu  agugccc ca   u
ua      -   g  uc   g     uc   --       g  caa 

>dgr-mir-7 (-24.00)   [dgr-miR-7:14-36]

     auu    aU   A   U  U     --       uggu 
aaugc   ccgu  GGA GAC AG GAUUU  UGUUGUu    c
|||||   ||||  ||| ||| || |||||  |||||||    u
uuacg   ggca  ccu cug uc cuaaa  acaauaa    u
     cgc    au   -   u  c     ua       uugu 

>dgr-mir-274 (-26.60)   [dgr-miR-274:4-29]

uc         C  A  CU        -    -a  --g  au 
  gGUUUGUGA CG CA  AACGGGUA GUua  ag   gc  c
  ||||||||| || ||  |||||||| ||||  ||   ||   
  uuaaacacu gc gu  uugcucau cggu  uc   cg  c
-c         a  -  uu        u    cg  uua  cu 

>dgr-mir-5-2 (-27.00)   [dgr-miR-5:5-27]

--    -       C               ---  uuca 
  gcua AAAGGAA GAUCGUUGUGAUAUG   cg    u
  |||| ||||||| |||||||||||||||   ||     
  cgau uuuccuu uuagugacacuauac   gc    u
cg    a       -               auu  uaaa 

>dgr-let-7-2 (-34.40)   [dgr-let-7:11-31]

  u      uU   G                 --   uc 
uc ggcaaa  GAG UAGUAGGUUGUAUAGUa  gua  u
|| ||||||  ||| |||||||||||||||||  |||   
ag ucguuu  uuc aucguucgacauaucau  cau  a
  u      cu   g                 ac   cu 

>dgr-mir-281-2 (-35.30)   [dgr-miR-281-2*:15-36] [dgr-miR-281:61-83]

      gcg a ug        -UA     C      caa      ua 
cgaaua   a a  AAGAGAGC   UCCGU GACAGU   guuaua  c
||||||   | |  ||||||||   ||||| ||||||   ||||||  c
gcuuau   u U  UUCUCUCG   AGGUA CUGUca   uaaugu  g
      -aa a GU        UUA     -      ---      ua 

>dgr-mir-92b (-35.30)   [dgr-miR-92b:57-78]

aa  u   - uga         u c       uu      u   au 
  cg cac c   uguaggucg g cuggugc  auuugu guu  g
  || ||| |   ||||||||| | |||||||  |||||| |||  u
  gc gug g   aCGUCCGGC C GAUCACG  UAAaca uaa  g
ac  u   a -ug         C U       -U      -   aa 

>dgr-mir-275 (-47.46)   [dgr-miR-275:56-78]

--   -gu               -a    ug   gg     guuuug 
  guc   uuaccgcgcgcgcua  ucag  acc  ggcug      a
  |||   |||||||||||||||  ||||  |||  |||||      u
  cag   ggugguGCGCGCGAU  AGUC  UGG  CUgac      u
cg   acc               GA    CA   -A     acccua 

>dgr-mir-2c (-30.60)   [dgr-miR-2c:61-83]

ca    uua    -       -      aag     a  -     a  ucu 
  uguc   cuuu caauguc aucaaa   ggcug ga augau ua   g
  ||||   |||| ||||||| ||||||   ||||| || ||||| ||    
  acgg   gaaa guuaCGG UAGUUU   CCGAC CU Ugcua gu   c
--    ---    c       G      CGA     A  A     a  uaa 

>dmo-mir-316 (-29.10)   [dmo-miR-316:16-37]

a     -    c   u           G   -A   A    uua 
 aguuc uagu gau UGUCUUUUUCC CUU  CUG CGuu   u
 ||||| |||| ||| ||||||||||| |||  ||| ||||   u
 uuaag auca uua gcggaaaaagg gaa  gac gcaa   g
-     u    u   u           -   gg   g    caa 

>dmo-mir-284 (-41.40)   [dmo-miR-284:64-92]

--         c       a      a   ugu gcc      g  aag  u 
  guugcaguu cuggaau aaguug cug   c   uguaag gg   gc u
  ||||||||| ||||||| |||||| |||   |   |||||| ||   ||  
  cggcGUCAA GACCUUA UUCAAC GAC   G   ACauuc uu   cg u
cc         C       G      -   --U -AA      g  --a  u 

>dmo-mir-4 (-25.50)   [dmo-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag      u 
u  caau a  uuc  uggu guc agc     gugauu c
|  |||| |  |||  |||| ||| |||     |||||| u
g  guug u  aAG  ACCA CAG UCG     UAcuag c
 gu    c ug   UU    A   A   --AAA      u 

>dmo-mir-12 (-29.40)   [dmo-miR-12:7-29]

      UG     U    C          -  gccaa 
uacggu  AGUAU ACAU AGGUACUGGU gu     u
||||||  ||||| |||| |||||||||| ||      
gugccg  ucaua ugua uucaugacca ca     u
      ca     c    -          a  aucaa 

>dmo-mir-276b (-40.10)   [dmo-miR-276b:61-82]

aa   -     auaua   uc    a     a           -----   a 
  cga agucu     cca  agcg gguau gaguuccuacg     ugc a
  ||| |||||     |||  |||| ||||| |||||||||||     ||| a
  gcu ucggg     ggu  UCGU CCAUA UUCAAGGAUgc     acg u
ca   g     ----a   UC    G     A           ugaua   u 

>dmo-mir-14 (-28.20)   [dmo-miR-14:41-61]

        c    cg      c      au 
ugugggag gaga  gggacu acugug  u
|||||||| ||||  |||||| ||||||  u
auAUCCUC CUCU  UUCUGA Ugauau  u
        U    UU      C      au 

>dmo-mir-92a (-32.32)   [dmo-miR-92a:55-76]

uc           gc   a     -     u   c    uaccu 
  auaaauugcuu  agg cggga aggug caa guuu     u
  |||||||||||  ||| ||||| ||||| ||| ||||     u
  uauuuggcgag  UCC GCCCU UUCAC GUU Caaa     u
uc           UA   G     G     -   A    cuuag 

>dmo-bantam (-25.80)   [dmo-bantam:53-75]

au     uac    c          uu      g   -  uuu 
  uugac   gaaa cgguuuucga  ugguuu acu gu   u
  |||||   |||| ||||||||||  |||||| ||| ||    
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga ca   u
--     ---    A          UU      G   a  uau 

>dmo-mir-6-1 (-23.40)   [dmo-miR-6:42-63]

ag            au       g    uc    
  uagagagaauag  gcuguga uaua  ugu 
  ||||||||||||  ||||||| ||||  || u
  gUUUUUCUUGUC  UGACACU AUau  acg 
au            GG       -    uu    

>dmo-mir-13b-2 (-21.40)   [dmo-miR-13b:44-65]

uu  g       u  a      gcuauguu     g 
  gc cgucaaa ug cuguga        uauga a
  || ||||||| || ||||||        ||||| u
  UG GCAGUUU AC GACACU        AUacu u
uu  A       U  C      --------     a 

>dmo-mir-100 (-27.10)   [dmo-miR-100:12-33]

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   a
ac    c     ga       ac   ca      u u uau 

>dmo-mir-219 (-32.20)   [dmo-miR-219:19-41]

ua    -g     u   ua    U     AAC          uug   u 
  auuc  auuuu agc  UGAU GUCCA   GCAAUUCUUG   auu u
  ||||  ||||| |||  |||| |||||   ||||||||||   |||  
  uaag  uaaag ucg  gcua cgggu   cguugggaac   uaa u
cc    ag     c   gc    -     cua          uca   a 

>dmo-mir-31b (-33.70)   [dmo-miR-31b:14-35]

     -    aau     A     UC  A       agagcacaaauaucauagaauccagaa 
caaau aaug   uUGGC AGAUG  GG AUAGCUG                           u
||||| ||||   ||||| |||||  || |||||||                           u
guuua uuac   aacug ucuac  cc uaucggc                           u
     c    guu     a     -u  g       gacaugaguuauuuuauguguuuuaua 

>dmo-mir-283 (-30.50)   [dmo-miR-283:15-35]

cc     uc       A           U         agcaaugcc 
  gauuc  aaaggUA AUAUCAGCUGG AAUUCUggg         c
  |||||  ||||||| ||||||||||| |||||||||         a
  uuaag  uuuucau uaugguugacu uuaaggcuc         a
--     uu       a           -         acaaaguau 

>dmo-mir-281-1 (-34.20)   [dmo-miR-281-1*:15-36] [dmo-miR-281:56-78]

      aguga           -UG     C      ---c    a 
cgaaua     auaAAGAGAGC   UCCGU GACAGU    cagu a
||||||     |||||||||||   ||||| ||||||    ||||  
gcuuau     UGUUUCUCUCG   AGGUA CUGUca    guua a
      -agua           UUA     -      aaau    g 

>dmo-mir-286 (-24.59)   [dmo-miR-286:69-91]

--         aaug    u   -    a     u    uucaacauauaca 
  uuaaaauua    gcga ugu cggu ugguc cuuu             c
  |||||||||    |||| ||| |||| ||||| ||||              
  aauuuuaau    UGCU ACA GCCA AUCAG gaaa             c
aa         aUCG    C   A    G     U    uauaucuuacaaa 

>dmo-mir-314 (-34.00)   [dmo-miR-314:75-95]

u  u       g     u   au     ucguc      aaagc       u 
 cg aacuugu uggcu cga  guacc     gagcga     gaauuca u
 || ||||||| ||||| |||  |||||     ||||||     |||||||  
 GC UUGAAUA ACCGA GCU  UAUgg     cucguu     uuuaggu g
G  -       -     -   --     ---uu      ---gu       u 

>dmo-mir-282 (-39.60)   [dmo-miR-282:11-38]

uu     -a  A           AC      U      Ugc    ga 
  uccuu  ua AUCUAGCCUCU  UAGGCU UGUCUG   auuu  u
  |||||  || |||||||||||  |||||| ||||||   ||||   
  gggaa  au uggauuggaga  auccga acagac   uaga  a
-g     cg  g           gu      u      ---    au 

>dmo-mir-305 (-26.00)   [dmo-miR-305:8-30]

     cu U         U  G     CU   g  a 
caugu  A UGUACUUCA CA GUGCU  Ggu uc g
|||||  | ||||||||| || |||||  ||| ||  
guaua  u acaugaagu gu cacgg  cca ag u
     ac c         u  a     -c   a  g 

>dmo-mir-281-2 (-32.20)   [dmo-miR-281-2*:15-36] [dmo-miR-281:61-83]

      gcg a ug        -UA     C      caa    uaua 
cgaaua   a a  AAGAGAGC   UCCGU GACAGU   guua    c
||||||   | |  ||||||||   ||||| ||||||   ||||    a
gcuuau   u U  UUCUCUCG   AGGUA CUGUca   uaau    u
      -aa a GU        UUA     -      ---    uuua 

>dmo-mir-8 (-31.10)   [dmo-miR-8:56-78]

-       cu uu -       -   g     c      uuccu   uu 
 aggacau  g  c acaucuu acc ggcag auuaga     guu  a
 |||||||  |  | ||||||| ||| ||||| ||||||     |||   
 uccugug  c  g UGUAGAA UGG CUGUC UAAUcu     caa  a
u       -- cu C       A   A     A      -----   ua 

>dmo-mir-306 (-33.60)   [dmo-miR-306:3-24] [dmo-miR-306*:48-69]

--  U       UU            ucacauau     
  gc CAGGUAC  AGUGACUCUCAA        ugcu 
  || |||||||  ||||||||||||        ||| u
  CG GUCCGUG  UCGCUGGGAGuu        acgu 
gc  U       UC            ----ucau     

>dmo-mir-2b (-38.20)   [dmo-miR-2b:53-75]

       a          -         a   --uuu  uu 
uuguguc uucuucaaag ugguuguga aug     gc  u
||||||| |||||||||| ||||||||| |||     ||  u
agcacag GAGGAGUUUC ACCGACACU Uac     cg  u
       C          G         A   ucauc  uc 

>dmo-mir-285 (-29.73)   [dmo-miR-285:67-88]

--    auu    a     ga    u      a    uaacgccca    g 
  ucaa   gaag acuga  ucga uggugc uaga         aaaa u
  ||||   |||| |||||  |||| |||||| ||||         ||||  
  gguu   uuuC UGACU  AGCU ACCACG AUcu         uuuu c
aa    auu    G     AA    U      -    -uaacuuua    a 

>dmo-mir-2c (-31.10)   [dmo-miR-2c:54-76]

ua    -       -      aag     agaa      --   ug 
  cuuu caguguc aucaaa   ggcug    ugauau  uuc  u
  |||| ||||||| ||||||   |||||    ||||||  |||  a
  gaag gucaCGG UAGUUU   CCGAC    ACUAUg  aag  a
gg    c       G      CGA     ----      uu   uu 

>dmo-mir-263a (-36.00)   [dmo-miR-263a:12-35]

--      g   a  UA   G     GA   AU       -  uuu 
  aucucg cac GU  AUG CACUG  AGA  UCACggg gu   u
  |||||| ||| ||  ||| |||||  |||  ||||||| ||   c
  uagggc gug ua  uac gugau  ucu  agugccc ca   u
ua      -   g  uc   g     uc   --       g  caa 

>dmo-mir-276a (-38.46)   [dmo-miR-276a:56-77]

cc      uug   uc    a     ag          uucaau 
  ugguuu   cca  agcg gguau  aguuccuacg      u
  ||||||   |||  |||| |||||  ||||||||||      u
  accaga   ggu  UCGU CCAUA  UCAAGGAUgc      a
aa      --a   UC    G     CU          ucauaa 

>dmo-mir-274 (-27.70)   [dmo-miR-274:6-31]

u     --       C  A  CU        GU       ucu  u 
 uucgG  UUUGUGA CG CA  AACGGGUA  ugaggca   cg a
 |||||  ||||||| || ||  ||||||||  |||||||   ||  
 aaguc  aaacacu gc gu  uugcucau  auuuugu   gc u
a     uu       a  -  uu        --       --c  u 

>dmo-mir-34 (-36.09)   [dmo-miR-34:14-35]

ug   a  -   uu        U  U   C        uggccac 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug       u
  ||| || |||  |||||||| || ||| ||||||||        
  cga ac gcg  gccgucac uc auc accgacac       u
--   -  a   cc        u  u   -        uaaaaag 

>dmo-mir-304 (-30.40)   [dmo-miR-304:12-34]

    ca    u       AAU       U     c auuu    c 
gcag  uuga UAAUCUC   UUGUAAA GUGAG g    uuaa u
||||  |||| |||||||   ||||||| ||||| |    ||||  
cguc  agcu guuagag   aacguuu cacuc c    aguu a
    ag    c       guu       -     a --gc    u 

>dmo-mir-92b (-35.30)   [dmo-miR-92b:57-78]

aa  u   - uga         u c       uu      u   au 
  cg cac c   uguaggucg g cuggugc  auuugu guu  g
  || ||| |   ||||||||| | |||||||  |||||| |||  c
  gc gug g   aCGUCCGGC C GAUCACG  UAAaca uaa  g
ac  u   a -ug         C U       -U      -   aa 

>dmo-mir-287 (-15.60)   [dmo-miR-287:40-60]

-aa   uu aa     gc           a 
   ugu  g  auuuu  acacauuuaca u
   |||  |  |||||  ||||||||||| a
   ACG  U  UAAAA  UGUGUaaaugu a
aaC   UU GC     GU           u 

>dmo-mir-309 (-24.80)   [dmo-miR-309:50-71]

      a gu      ug      uu   -  g uuc 
auuaua g  aaacuu  uucagu  ugc cg g   u
|||||| |  ||||||  ||||||  ||| || |    
uaauAU C  UUUGAA  GGGUCA  acg gu u   a
      G UG      GU      CU   c  g ugu 

>dmo-mir-13a (-26.76)   [dmo-miR-13a:47-68]

u   u     u      -        a   uagcca 
 gcg aacuc ucaagg gguuguga aug      u
 ||| ||||| |||||| |||||||| |||      u
 ugc uUGAG AGUUUU CCGACACU Uac      a
g   u     U      A        A   ugaacu 

>dmo-mir-87 (-28.25)   [dmo-miR-87:60-80]

-  uc    auu        -u  c     g     uuacaauugu 
 ca  uuuc   cgcgccug  au uugcu aaccg          c
 ||  ||||   ||||||||  || ||||| |||||           
 gu  aaag   GUGUGGAC  UA AACGA UUggc          a
u  uu    agu        UU  A     G     cuaaaccuac 

>dmo-mir-280 (-23.30)   [dmo-miR-280:10-36]

ua    -u      UU   G                --A      
  gcuu  uaUGUA  UAC UUGCAUAUGAAAUGAU   uuuau 
  ||||  ||||||  ||| ||||||||||||||||   |||| a
  cgga  guacau  aug gacguauauuuuauua   aaaug 
gc    cc      --   -                gac      

>dmo-mir-275 (-43.86)   [dmo-miR-275:56-78]

--    -u               -a    ug   gg     guuucg 
  gucu  uuaccgugcgcgcua  ucag  acc  ggcug      a
  ||||  |||||||||||||||  ||||  |||  |||||      u
  caga  ggugguGCGCGCGAU  AGUC  UGG  CUgac      u
cg    uc               GA    CA   -A     acucua 

>dmo-mir-307 (-37.80)   [dmo-miR-307:56-75]

         -   a         ccu  g       uuauu     
ugucuugcu uug cucacucaa   gg ugugaug     ucga 
||||||||| ||| |||||||||   || |||||||     ||| u
auaggacga agc GAGUGAGUU   CC ACACUac     ggcu 
         u   -         CCU  A       -cuau     

>dmo-mir-9b (-32.50)   [dmo-miR-9b:15-37]

u   --u        uUC         UUU    G     u   c 
 gca   auuauuug   UUUGGUGAU   AGCU UAUGg gug g
 |||   ||||||||   |||||||||   |||| ||||| |||  
 cgu   ugguaaac   aaaccauua   ucga auacc uau c
a   uuc        caa         -uu    g     u   g 

>dmo-mir-210 (-37.92)   [dmo-miR-210:52-72]

ac    -     ugc        gc   -         uuaga 
  ggug cuuau   agcugcug  cac ugcacaaga     c
  |||| |||||   ||||||||  ||| |||||||||     u
  ccgu gaaug   UCGGCGAC  GUG GCGUGUUcu     c
ga    a     uuA        -A   U         cagaa 

>dmo-mir-3 (-27.40)   [dmo-miR-3:42-63]

--               g   augucuaacga 
  ugggaugcauuuugu cag           u
  ||||||||||||||| |||           u
  ACUCUGUGUGAAACG GUC           g
aa               G   ACUacccaaag 

>dmo-mir-125 (-31.70)   [dmo-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dmo-mir-9a (-25.80)   [dmo-miR-9a:9-31]

cu      U       UAU      G     -  gau 
  auguug CUUUGGU   CUAGCU UAUGA gu   a
  |||||| |||||||   |||||| ||||| ||    
  uauaau gaagcca   gaucga auacu ca   a
au      u       uuc      a     g  aua 

>dmo-mir-317 (-34.00)   [dmo-miR-317:53-76]

ug    u   g     aua    --     c      uga  uu 
  caau gcc cuggg   cacc  cugug ucgcuu   gu  a
  |||| ||| |||||   ||||  ||||| ||||||   ||  u
  guug cgg GACCU   GUGG  GACAC AGUgaa   cg  g
ca    c   A     AUG    UC     A      ---  uu 

>dmo-mir-2a-2 (-32.90)   [dmo-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g agc 

>dmo-mir-6-3 (-25.73)   [dmo-miR-6:52-73]

   g           uu      u       ucgaauu 
aaa agaagagaacg  cgcugu gauguag       c
||| |||||||||||  |||||| |||||||       a
uuu uUUUUUCUUGU  GUGACA CUAUauu       u
   g           CG      -       ucuaauu 

>dmo-mir-184 (-37.70)   [dmo-miR-184*:20-40] [dmo-miR-184:59-80]

-     -c    c  u  ua         -     G  -  CCG    cau 
 uuggc  ggug au cg  cCCUUAUCA UUCUC CG CC   ugug   a
 |||||  |||| || ||  ||||||||| ||||| || ||   ||||    
 aacug  ccac ua gc  GGGAAUAGU AAGAG GC GG   acau   u
c     aa    -  u  uC         C     -  A  Uca    auc 

>dmo-mir-288 (-28.21)   [dmo-miR-288:65-87]

-  a  c     -------   ua  -  -u  a      u  ug   a  a 
 gg cg gucgu       aau  gc ug  gc cagcgu gc  gcg ua u
 || || |||||       |||  || ||  || |||||| ||  ||| || u
 cc gc caGUA       UUA  UG AC  Ug guugca ug  ugc gu a
g  g  a     CUUUACU   GC  U  UU  -      c  gu   a  a 

>dmo-mir-278 (-34.80)   [dmo-miR-278:59-80]

uu     acgg     c       u     a  a     guaca   u 
  auggu    ugcga cggauga gguuc ca cgacc     guu u
  |||||    ||||| ||||||| ||||| || |||||     ||| u
  uaccg    augUU GCCUGCU UCAGG GU GCUgg     caa u
uu     --ca     U       U     -  G     ----g   c 

>dmo-mir-31a (-36.90)   [dmo-miR-31a:14-36]

       uug       A     U         ---------  A    u 
ucuauug   aauUGGC AGAUG CGGCAUAGC         UG cguu c
|||||||   ||||||| ||||| |||||||||         || ||||  
agguaac   uugacug ucuac gucguaucg         ac gcga a
       uua       a     -         cgauacguu  -    a 

>dmo-mir-133 (-34.60)   [dmo-miR-133:52-73]

--    -     gug           cauc  gu     -  guu 
  caac gcugu   uaguugguuga    gg  cagau cu   u
  |||| |||||   |||||||||||    ||  ||||| ||    
  guug ugacg   GUCGACCAACU    CC  GUUua ga   u
ua    g     -aU           -UCC  UG     a  gcu 

>dmo-mir-6-2 (-30.40)   [dmo-miR-6:55-76]

      c       u  ug   c       cuauau    uu 
uaaccg agggaac gc  cug ugauaua      guau  g
|||||| ||||||| ||  ||| |||||||      ||||   
guuggU UUUCUUG CG  GAC ACUAUau      caug  u
      U       U  GU   -       ----cu    ac 

>dmo-mir-11 (-25.41)   [dmo-miR-11:54-74]

  a  uaa         uuu      cc    ugaauucc 
gc cu   caagaacuu   cuguga  ugcg        u
|| ||   |||||||||   ||||||  ||||        a
cg ga   GUUCUUGAG   GACACU  ACgc        u
  c  uuC         UCU      --    caaacgua 

>dmo-mir-iab-4 (-26.50)   [dmo-miR-iab-4-5p:7-28] [dmo-miR-iab-4-3p:41-64]

    -a             U    C   Ag  u 
ucgu  uACGUAUACUGAA GUAU CUG  ug a
||||  ||||||||||||| |||| |||  || u
agca  AUGCAUAUGACUU CAUA GGC  au c
    CA             C    U   cu  c 

>dmo-mir-279 (-40.90)   [dmo-miR-279:60-81]

gu                    a     c  uguu     uuguu   u 
  acuacuguuuuuagugagug ggguc ag    ucaca     ugc u
  |||||||||||||||||||| ||||| ||    |||||     |||  
  ugauggcaaaAAUUACUCAC CCUAG UC    AGUgu     aug a
cu                    A     A  ----     ---uu   a 

>dmo-mir-9c (-26.80)   [dmo-miR-9c:13-34]

    uu    uuU         UCU    G     u  uuu  c 
auuu  gcug   CUUUGGUAU   AGCU UAGAu gu   ca a
||||  ||||   |||||||||   |||| ||||| ||   || u
uaaa  cgac   gaaaccaua   ucga aucua ua   gu a
    uu    cuc         uuu    a     c  --u  u 

>dmo-mir-318 (-25.21)   [dmo-miR-318:44-65]

u          c  u         uuuguca     c 
 uuaugggaua ac aaguucagu       gaugu c
 |||||||||| || |||||||||       |||||  
 aauACUCUAU UG UUCGGGUCA       CUacg a
g          U  U         -------     a 

>dmo-mir-277 (-37.80)   [dmo-miR-277:55-77]

ca       gc  -   gu    -            --  gaaac 
  guuuugg  ug cgu  cagg agugcauuugca  cu     a
  |||||||  || |||  |||| ||||||||||||  ||      
  caagacc  AC GCA  GUCU UCACGUAAAUgu  ga     u
ug       uu  A   UG    A            uc  agucu 

>dmo-let-7 (-31.84)   [dmo-let-7:11-31]

  u      uU   G     G           guacuu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa      a
|| ||||||  ||| ||||| |||||||||||       
ag ucguuu  uuc aucgu cgacauaucau      u
  u      cu   g     g           accaga 

>dmo-mir-315 (-28.30)   [dmo-miR-315:12-33]

cc     auaa               A       --cg   uu 
  cuuau    UUUUGAUUGUUGCUC GAAAGCc    uaa  u
  |||||    ||||||||||||||| |||||||    |||   
  gaaua    aaagcuaauaaugag cuuucgg    auu  a
--     aacc               -       uaca   ca 

>dmo-mir-124 (-34.60)   [dmo-miR-124:57-79]

uc  uu   -a     uu   c      c      ag    c    aau 
  gu  ggu  cguuu  cuc ugguau cacugu  gccu uaug   u
  ||  |||  |||||  ||| |||||| ||||||  |||| ||||   u
  ca  uca  gcaag  gaG ACCGUA GUGGCG  CGGA AUac   u
aa  uc   aa     -c   A      A      CA    -    cag 

>dmo-mir-2a-1 (-39.27)   [dmo-miR-2a:51-73]

         -      -a        a    auuuugaa 
gcugagcuc ucaaag  ggcuguga augc        a
||||||||| ||||||  |||||||| ||||         
cgauuCGAG AGUUUC  CCGACACU Uacg        g
         U      GA        A    agcguuuc 

>dmo-mir-308 (-23.80)   [dmo-miR-308:41-62]

           u       u    -   au 
cucgcaguaua uuuugug uuug uuu  u
||||||||||| ||||||| |||| |||  a
GAGUGUCAUAU AGGACAC AAac aaa  u
           U       U    u   aa 

>dmo-mir-79 (-29.94)   [dmo-miR-79:49-70]

uu    u        cgc       g     uagauu 
  gccg ugcuuugg   uuuagcu uauga      u
  |||| ||||||||   ||||||| |||||       
  cggu ACGAAACC   AGAUCGA AUacu      a
cu    U        AUU       A     ucauaa 

>dmo-mir-5 (-27.20)   [dmo-miR-5:5-27]

--    -       C               cgu    c 
  gcua AAAGGAA GAUCGUUGUGAUAUG   uaau g
  |||| ||||||| |||||||||||||||   |||| a
  cgau uuuccuu uuagugacacuauac   auug c
cg    a       -               ---    c 

>dmo-mir-7 (-33.30)   [dmo-miR-7:15-37]

g     uu      U       U  U     --       u   c 
 agugc  gccgua GGAAGAC AG GAUUU  UGUUGUu ggu u
 |||||  |||||| ||||||| || |||||  ||||||| |||  
 uuacg  cgguau ucuucug uc cuaaa  acaauaa ucg c
-     cu      -       u  c     ua       -   u 

>dmo-mir-10 (-32.80)   [dmo-miR-10:9-29]

      cu   -  G    U           g accau 
ccacgu  ACC CU UAGA CCGAAUUUGUu u     a
||||||  ||| || |||| ||||||||||| |      
ggugua  ugg ga aucu ggcuuaaacag a     g
      uu   a  g    u           g auuuc 

>dmo-mir-1 (-37.10)   [dmo-miR-1:56-77]

ug    uuu  --ga            c        a   ---g   u 
  cgcc   ga    guuccaugcuuc uugcauuc aua    uau u
  ||||   ||    |||||||||||| |||||||| |||    |||  
  gcgg   cu    cGAGGUAUGAAG AAUGUAAG Uau    aua a
-a    --u  aaag            A        G   acga   u 

>dmo-mir-33 (-43.50)   [dmo-miR-33:15-35]

ug       g      -G           C C    u     uccuu 
  gagcugu acggAG  UGCAUUGUAGU G AUUG cugua     u
  ||||||| ||||||  ||||||||||| | |||| |||||      
  cuugacg ugccuc  acgugacguca c uaac ggcgu     a
ca       -      ga           a a    -     cucuu 

>dmo-mir-313 (-29.00)   [dmo-miR-313:42-63]

-              uu   u    u   u ua 
 uuuccgguugugaa  gug caau cuu u  u
 ||||||||||||||  ||| |||| ||| |   
 aaAGGCCGGCACUU  CAC GUUA gaa a  u
a              UU   -    U   c uu 

>dmo-mir-13b-1 (-23.40)   [dmo-miR-13b:43-64]

   -ug           u      ccg    uauu 
cca   ucguuaaaaug cuguga   uaug    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    a
   uUG           C      ---    uauc 

>dpe-mir-307 (-38.10)   [dpe-miR-307:56-75]

         -   a         ccu  g       -u    uc 
ugucuugcu uug cucacucaa   gg ugugaug  uauu  g
||||||||| ||| |||||||||   || |||||||  ||||  a
auaggacga agc GAGUGAGUU   CC ACACUac  augg  u
         u   -         CCU  A       cu    ua 

>dpe-mir-3 (-34.39)   [dpe-miR-3:48-69]

g                   g    u   ucuacgu 
 auccugggaugcauuuugu cagu aug       g
 ||||||||||||||||||| |||| |||        
 uaggACUCUGUGUGAAACG GUCA Uac       a
-                   G    C   uccuacu 

>dpe-let-7-1 (-29.62)   [dpe-let-7:11-31]

  u      uU   G     G           guacu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa     u
|| ||||||  ||| ||||| |||||||||||     c
ag ucguuu  uuc aucgu uaacauaucau     a
  u      cu   g     g           gcuag 

>dpe-mir-184 (-33.70)   [dpe-miR-184*:16-36] [dpe-miR-184:55-76]

cc    c  u  ua         -     G  -  CCG   gcau 
  ggug au cg  cCCUUAUCA UUCUC CG CC   ugu    u
  |||| || ||  ||||||||| ||||| || ||   |||     
  ccac ua gc  GGGAAUAGU AAGAG GC GG   aca    a
aa    -  u  uC         C     -  A  Uca   gaaa 

>dpe-mir-277 (-38.90)   [dpe-miR-277:59-81]

--   a g       gu  -   gu    -            --  gaaac 
  uug a guuuugg  ug cgu  cagg agugcauuugca  cu     a
  ||| | |||||||  || |||  |||| ||||||||||||  ||      
  aac u caagacc  AC GCA  GUCU UCACGUAAAUgu  ga     u
cu   a g       uu  A   UG    A            uc  agucu 

>dpe-mir-14 (-26.40)   [dpe-miR-14:41-61]

        c    cg      c    -ug u 
ugugggag gaga  gggacu acug   c u
|||||||| ||||  |||||| ||||   |  
auAUCCUC CUCU  UUCUGA Ugau   g u
        U    UU      C    gaa u 

>dpe-mir-210 (-36.82)   [dpe-miR-210:50-70]

--   -a     ugc        gc   -         uuaga 
  ggu  cuuau   agcugcug  cac ugcacaaga     u
  |||  |||||   ||||||||  ||| |||||||||     u
  ccg  gaaug   UCGGCGAC  GUG GCGUGUUcu     u
ua   ga     uuA        -A   U         cagaa 

>dpe-mir-276a (-38.46)   [dpe-miR-276a:56-77]

cc      uug   uc    a     ag          uucaua 
  ugguuu   cca  agcg gguau  aguuccuacg      u
  ||||||   |||  |||| |||||  ||||||||||      u
  accaga   ggu  UCGU CCAUA  UCAAGGAUgc      a
aa      --a   UC    G     CU          ucaaau 

>dpe-mir-13a (-24.56)   [dpe-miR-13a:47-68]

    u   c       -c        a   uugcau 
uacg aac caucaaa  gguuguga aug      u
|||| ||| |||||||  |||||||| |||      u
gugc uUG GUAGUUU  CCGACACU Uac      a
    u   A       UA        A   uaaacu 

>dpe-mir-6-3 (-26.79)   [dpe-miR-6:58-79]

cc     c       c  ug   c       uuauccacc  u 
  aaccg agggaac gc  cug ugauaua         ca c
  ||||| ||||||| ||  ||| |||||||         ||  
  uuggU UUUCUUG CG  GAC ACUAUau         gu u
--     U       U  GU   -       --cuuuaca  u 

>dpe-mir-284 (-44.40)   [dpe-miR-284:64-92]

--         c              acuguguagccugggaaggcaag 
  guugcaguu cuggaauuaaguug                       g
  ||||||||| ||||||||||||||                        
  cggcGUUAA GACCUUAGUUCAAC                       c
cc         C              GACUGAAGUcuucgucacgaguu 

>dpe-mir-286 (-32.84)   [dpe-miR-286:62-84]

--         aaug    u   -               --uuacca    
  uuaaaauua    gcga ugu cgguuuggucgcuuu        ggg 
  |||||||||    |||| ||| |||||||||||||||        || u
  gauuuuaau    UGCU ACA GCCAGAUCAGUgaag        ccu 
aa         aUCG    C   A               cgaacuag    

>dpe-mir-8 (-31.42)   [dpe-miR-8:53-75]

        cu uu -       -   g     c      uccuu 
aaggacau  g  c acaucuu acc ggcag auuaga     u
||||||||  |  | ||||||| ||| ||||| ||||||     a
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu     g
        -- cu C       A   A     A      ccaua 

>dpe-mir-13b-2 (-24.50)   [dpe-miR-13b:43-64]

uu  g          a      gc    u uuu 
  ac cgucaaaaug cuguga  uaug g   u
  || |||||||||| ||||||  |||| |    
  UG GCAGUUUUAC GACACU  AUac c   u
uu  A          C      --    u uag 

>dpe-mir-133 (-39.40)   [dpe-miR-133:56-77]

ua    g    u              cauc  gu     -  auu 
  caac gcug auguagcugguuga    gg  cagau cu   u
  |||| |||| ||||||||||||||    ||  ||||| ||   u
  guug ugac uaUGUCGACCAACU    CC  GUUua ga   a
ua    g    -              -UCC  UG     u  acu 

>dpe-mir-283 (-30.00)   [dpe-miR-283:15-35]

ac     uc      AA           U         a cuaag  a 
  gauuc  aaaggU  AUAUCAGCUGG AAUUCUggg g     ca g
  |||||  ||||||  ||||||||||| ||||||||| |     || a
  uuaag  uuuuca  uaugguugacu uuaaggcuc c     gu u
--     uu      gc           -         a --aaa  a 

>dpe-mir-5 (-27.20)   [dpe-miR-5:5-27]

--    -       C               cgu    u 
  gcua AAAGGAA GAUCGUUGUGAUAUG   uaau c
  |||| ||||||| |||||||||||||||   |||| a
  cgau uuuccuu uuagugacacuauac   auug c
cg    a       -               ---    c 

>dpe-mir-34 (-37.70)   [dpe-miR-34:14-35]

ug   a  -   uu        U  U   C        --ua c    aua 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug    g caaa   u
  ||| || |||  |||||||| || ||| ||||||||    | ||||    
  cga ac gcg  gccgucac uc auc accgacac    c guuu   u
--   -  a   cc        u  u   -        uuac a    ccg 

>dpe-mir-282 (-37.70)   [dpe-miR-282:10-37]

ug    -auaA           AC      U      Ugcau   aa 
  ccuu     AUCUAGCCUCU  UAGGCU UGUCUG     uug  a
  ||||     |||||||||||  |||||| ||||||     |||   
  ggaa     uggauuggaga  auccga acagac     agc  a
aa    ccaug           au      u      ----u   cc 

>dpe-mir-9a (-29.00)   [dpe-miR-9a:10-32]

    -     U       UAU      G     -  gau 
gcua uguug CUUUGGU   CUAGCU UAUGA gu   a
|||| ||||| |||||||   |||||| ||||| ||    
cgau auaau gaagcca   gaucga auacu ca   a
    u     u       uuc      a     g  aua 

>dpe-mir-100-2 (-29.60)   [dpe-miR-100:12-33]

-c    a     AA        U   AA      - u uuu 
  cauu acaga  CCCGUAAU CCG  CUUGUG c g   u
  |||| |||||  |||||||| |||  |||||| | |    
  guaa ugucu  ggguauua ggc  gaacau g c   a
ac    c     ga        c   ca      u u uau 

>dpe-mir-219 (-33.00)   [dpe-miR-219:19-41]

ua    -g     u   ua    U     AA           uug  a 
  auuc  auuuu agc  UGAU GUCCA  CGCAAUUCUUG   au u
  ||||  ||||| |||  |||| |||||  |||||||||||   || c
  uaag  uaaag ucg  gcua caggu  guguugggaac   ua c
ca    aa     c   gc    -     ca           uca  a 

>dpe-mir-314 (-30.30)   [dpe-miR-314:69-89]

u  u       g     u   au     uaguu    ---a   c   g 
 cg aacuugu uggcu cga  guacc     gagg    aaa ucc a
 || ||||||| ||||| |||  |||||     ||||    ||| ||| a
 GC UUGAAUA ACCGA GCU  UAUgg     cucc    uuu agg a
G  -       -     -   --     ----u    auug   u   u 

>dpe-bantam (-25.50)   [dpe-bantam:52-74]

au     uac    c          uu      g   -  uu 
  uugac   gaaa cgguuuucga  ugguuu acu gu  u
  |||||   |||| ||||||||||  |||||| ||| ||  u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga ca  u
--     ---    A          UU      G   a  ua 

>dpe-mir-280 (-31.60)   [dpe-miR-280:9-35]

--       ---a     U   G                --A      
  ggcuuuu    UGUAU UAC UUGCAUAUGAAAUGAU   uuuau 
  |||||||    ||||| ||| ||||||||||||||||   |||| a
  ccgagaa    acgug aug gacguauauuuuauua   aaaug 
gu       gucg     u   -                gac      

>dpe-mir-31a (-37.30)   [dpe-miR-31a:14-36]

        ua       A     U         UGAaguugaaaa 
ucuguugg  aauUGGC AGAUG CGGCAUAGC            g
||||||||  ||||||| ||||| |||||||||            c
agguaacu  uugacug ucuac gucguaucg            g
        ua       a     -         caagaguuucua 

>dpe-mir-1 (-34.80)   [dpe-miR-1:53-74]

--   uuu  --ga            c        a   -  auaa 
  gcc   ga    guuccaugcuuc uugcauuc aua gu    c
  |||   ||    |||||||||||| |||||||| ||| ||     
  cgg   cu    cGAGGUAUGAAG AAUGUAAG Uau cg    a
aa   --u  aaag            A        G   a  aaau 

>dpe-mir-125-2 (-31.70)   [dpe-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dpe-mir-278 (-39.00)   [dpe-miR-278:57-78]

gu      acgg     c       u     a  a      u  cu 
  aauggu    ugcga cggacga gguuc ca cgaccg gu  c
  ||||||    ||||| ||||||| ||||| || |||||| ||  u
  uuaccg    augUU GCCUGCU UCAGG GU GCUggu ca  u
gu      --ca     U       U     -  G      -  aa 

>dpe-mir-281-1 (-33.73)   [dpe-miR-281-1*:15-36] [dpe-miR-281:56-78]

      gg  a           -UG     C      caacgua 
cgaaua  ug auaAAGAGAGC   UCCGU GACAGU       c
||||||  || |||||||||||   ||||| ||||||       c
gcuuau  au UGUUUCUCUCG   AGGUA CUGUca       a
      -a  a           UUA     -      uaauuua 

>dpe-mir-2a-2 (-32.90)   [dpe-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g aac 

>dpe-mir-315 (-29.93)   [dpe-miR-315:12-33]

       cuau       U       A       cuuauaa 
cacuuau    UUUUGAU GUUGCUC GAAAGCc       u
|||||||    ||||||| ||||||| |||||||       u
gugaaua    gaaacua uaacgag cuuucgg       a
       aacc       u       -       uugacca 

>dpe-mir-124 (-33.20)   [dpe-miR-124:57-79]

uc    g  a      ucucc      c      ag    a    uau 
  guuu gu cguuuu     ugguau cacugu  gccu uaug   u
  |||| || ||||||     |||||| ||||||  |||| ||||   u
  caaa ca gcgaGA     ACCGUA GUGGCG  CGGA AUac   c
cu    g  g      -----      A      CA    -    cag 

>dpe-mir-308 (-27.20)   [dpe-miR-308:41-62]

           u       uuuug      c 
cucgcaguaua uuuugug     uugugu u
||||||||||| |||||||     |||||| g
GAGUGUCAUAU AGGACAC     Aacgca a
           U       ---UA      a 

>dpe-mir-125-1 (-31.70)   [dpe-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dpe-mir-87 (-31.50)   [dpe-miR-87:60-80]

--  u     auu        -u  c     g     ------u  -  a 
  ca auuuc   cgcgccug  au uugcu aaccg       ag cc u
  || |||||   ||||||||  || ||||| |||||       || || a
  gu uaaag   GUGUGGAC  UA AACGA UUggc       uc gg a
uu  u     agu        UU  A     G     ccuacuu  u  u 

>dpe-mir-279 (-37.30)   [dpe-miR-279:60-81]

au         u          a     c  uguu     uug   u 
  acuacuguu uuagugagug ggguc ag    ucaca   auu u
  ||||||||| |||||||||| ||||| ||    |||||   ||| c
  ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   uga u
cu         u          A     A  ----     uua   u 

>dpe-mir-263b (-34.30)   [dpe-miR-263b:16-36]

uu     -    g -cuCUU      G G     U     uug  uu 
  gcugg cauu g      GGCACU G AGAAU CACag   gu  u
  ||||| |||| |      |||||| | ||||| |||||   ||   
  cggcu guaa c      ccgugg c ucuug guguc   ua  c
-u     u    g uaaaac      g g     -     uua  ua 

>dpe-mir-2c (-27.10)   [dpe-miR-2c:64-86]

-u   auc    c  u       -      aa      aagaaa     -a   gc 
  ggu   cuua uu caguguc aucaaa  uggcug      gauau  uuu  a
  |||   |||| || ||||||| ||||||  ||||||      |||||  |||   
  cua   gagu aa guuaCGG UAGUUU  ACCGAC      CUAUg  aag  u
ag   --c    -  c       G      CG      -----A     cg   uu 

>dpe-mir-13b-1 (-21.10)   [dpe-miR-13b:44-65]

   -ug           u      ccu    uacu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||    u
ggu   AGCAGUUUUAC GACACU   AUac    u
   uUG           C      ---    uaag 

>dpe-mir-11 (-25.50)   [dpe-miR-11:45-65]

--   uu u          uu      cc  c  gac 
  cuc  g caagaacuua  cuguga  ug gu   a
  |||  | ||||||||||  ||||||  || ||    
  gag  C GUUCUUGAGU  GACACU  ac cg   u
gc   -u -          CU      AC  -  auu 

>dpe-mir-2b (-37.30)   [dpe-miR-2b:54-76]

       a          -         a   --uuu  cuu 
uuguguc uucuucaaag ugguuguga aug     gc   u
||||||| |||||||||| ||||||||| |||     ||    
agcacag GAGGAGUUUC ACCGACACU Uac     cg   u
       C          G         A   uuauc  uau 

>dpe-mir-317-2 (-35.49)   [dpe-miR-317:55-78]

u   --  u         aua    --     c      ugaauau 
 gca  ac gccguuggg   cacc  cugug ucgcuu       g
 |||  || |||||||||   ||||  ||||| ||||||        
 cgu  ug cggUAACCU   GUGG  GACAC AGUgaa       g
a   cu  c         AUG    UC     A      cgaacgu 

>dpe-mir-125-3 (-31.70)   [dpe-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dpe-mir-iab-4 (-26.50)   [dpe-miR-iab-4-5p:7-28] [dpe-miR-iab-4-3p:41-64]

    -a             U    C   Ag  u 
ucgu  uACGUAUACUGAA GUAU CUG  ug a
||||  ||||||||||||| |||| |||  || u
agca  AUGCAUAUGACUU CAUA GGC  au c
    CA             C    U   cu  c 

>dpe-mir-7 (-32.00)   [dpe-miR-7:15-37]

ga      u     U       U  U     --       u   c 
  guguau ccgua GGAAGAC AG GAUUU  UGUUGUu ggu u
  |||||| ||||| ||||||| || |||||  ||||||| |||  
  uacgug ggcau ucuucug uc cuaaa  acaauaa ucg c
uc      c     -       u  c     ua       -   u 

>dpe-mir-2a-1 (-40.14)   [dpe-miR-2a:47-69]

          -     -         a    auuuug 
gcugggcuca caaag ugguuguga augc      c
|||||||||| ||||| ||||||||| ||||       
cggcuCGAGU GUUUC ACCGACACU Uacg      u
          A     G         A    cccguu 

>dpe-mir-33 (-37.62)   [dpe-miR-33:15-35]

cg      a    c  -G           C C        uccau 
  gagaug cacg AG  UGCAUUGUAGU G AUUGucug     c
  |||||| |||| ||  ||||||||||| | ||||||||     u
  cuuuac gugu uc  acgugacguca c uaacggac     u
-a      -    c  ga           a a        uuuag 

>dpe-mir-275 (-46.90)   [dpe-miR-275:55-77]

aa    cc              -a    ag   gg     guuuu 
  gucu  uaccaugcgcgcua  ucag  acc  ggcug     u
  ||||  ||||||||||||||  ||||  |||  |||||      
  caga  gugguGCGCGCGAU  AGUC  UGG  CUgac     u
-a    uc              GA    CA   -A     gucac 

>dpe-mir-9b (-31.44)   [dpe-miR-9b:15-37]

u   --c        aUC         UUU    G     uguaua 
 gca   auuauuug   UUUGGUGAU   AGCU UAUGg      u
 |||   ||||||||   |||||||||   |||| |||||       
 cgu   ugguaaac   aaaccacua   ucga auacc      c
a   uuu        cca         -uu    g     uagaaa 

>dpe-mir-317-1 (-35.49)   [dpe-miR-317:55-78]

u   --  u         aua    --     c      ugaauau 
 gca  ac gccguuggg   cacc  cugug ucgcuu       g
 |||  || |||||||||   ||||  ||||| ||||||        
 cgu  ug cggUAACCU   GUGG  GACAC AGUgaa       g
a   cu  c         AUG    UC     A      cgaacgu 

>dpe-mir-9c (-28.50)   [dpe-miR-9c:13-34]

    uu    uuU         UCU    G     u  uuuu   a 
auuu  gcug   CUUUGGUAU   AGCU UAGAu gu    ugc c
||||  ||||   |||||||||   |||| ||||| ||    ||| a
uaaa  cgac   gaaaccaua   ucga aucua ua    aug u
    uu    cuc         uuu    a     c  ---u   u 

>dpe-mir-79 (-27.40)   [dpe-miR-79:50-71]

cu   uc        cgc       g     uag  u 
  gcu  ugcuuugg   uuuagcu uauga   au u
  |||  ||||||||   ||||||| |||||   || a
  cgg  ACGAAACC   AGAUCGA AUacu   ua a
cu   uU        AUU       A     uca  a 

>dpe-mir-289 (-30.30)   [dpe-miR-289:15-40]

ag     a   -a      UA         ---     ----- C  -    g 
  uuuac gug  aaUAAA  UUUAAGUGG   AGCCU     G GA CUgg a
  ||||| |||  ||||||  |||||||||   |||||     | || ||||  
  aaaug cac  uuguuu  gaguucacu   ucggg     c cu gacc c
ga     -   gg      gc         caa     ucagc u  c    u 

>dpe-mir-318 (-24.10)   [dpe-miR-318:43-64]

u          c  c         uu  -  ac 
 uuaugggaug ac aaguucagu  ug uc  a
 |||||||||| || |||||||||  || ||  u
 aauACUCUAU UG UUCGGGUCA  ac ag  u
g          U  U         CU  g  cu 

>dpe-mir-276b (-38.20)   [dpe-miR-276b:61-82]

aa c  -    u  uua   uc    a     a           u  cgua 
  g ga agcc cu   cca  agcg gguau gaguuccuacg gc    u
  | || |||| ||   |||  |||| ||||| ||||||||||| ||     
  c cu ucgg ga   ggu  UCGU CCAUA UUCAAGGAUgc ug    c
ua -  g    -  ---   UC    G     A           -  aaac 

>dpe-mir-4 (-25.50)   [dpe-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag      u 
u  caau a  uuc  uggu guc agc     gugauu c
|  |||| |  |||  |||| ||| |||     |||||| u
g  guug u  aAG  ACCA CAG UCG     UAcuag c
 gu    c ug   UU    A   A   --AAA      u 

>dpe-mir-31b (-22.80)   [dpe-miR-31b:4-26]

-au     A     UC  A       -Agag    aaga 
   uUGGC AGAUG  GG AUAGCUG     caaa    a
   ||||| |||||  || |||||||     ||||     
   aacug ucuac  cc uaucggc     guuu    g
guu     a     -u  g       guaaa    agua 

>dpe-mir-288 (-36.31)   [dpe-miR-288:65-87]

-    a      -------   ua   -   ua      u       aaaa 
 ggcc ugucgu       aau  gca ggg  cagcgu gccggcg    u
 |||| ||||||       |||  ||| |||  |||||| |||||||    u
 ccgg acaGUA       UUA  UGU CUU  guugca ugguugc    a
g    c      CUUUACU   GC   A   Ug      c       agua 

>dpe-mir-10 (-31.00)   [dpe-miR-10:9-29]

     ucu   -  G    U             acauu 
ccacg   ACC CU UAGA CCGAAUUUGUuuu     a
|||||   ||| || |||| |||||||||||||      
ggugu   ugg ga aucu ggcuuaaacagga     g
     guu   a  g    u             auuuc 

>dpe-mir-281-2 (-33.30)   [dpe-miR-281-2*:15-36] [dpe-miR-281:59-81]

      gug a           -UA     C      ---ca    a 
cgaaua   a auaAAGAGAGC   UCCGU GACAGU     aguu a
||||||   | |||||||||||   ||||| ||||||     |||| u
gcuuau   u UGUUUCUCUCG   AGGUA CUGUca     uuag c
      -aa a           UUA     -      uaaug    a 

>dpe-mir-305 (-24.50)   [dpe-miR-305:8-30]

     cu U         U  G     CU  u  guc 
caugu  A UGUACUUCA CA GUGCU  Gg gu   c
|||||  | ||||||||| || |||||  || ||    
guaua  u acaugaagu gu cacgg  cc ca   u
     ac c         u  a     --  -  aug 

>dpe-mir-92b (-35.70)   [dpe-miR-92b:57-78]

aa  u   -  ga         u c c     uu      c   gu 
  cg cac cu  uguaggccg g c agugc  auuugu guu  u
  || ||| ||  ||||||||| | | |||||  |||||| |||  u
  gc gug ga  aCGUCCGGC C G UCACG  UAAaca uaa  g
ac  u   a  -g         C U A     -U      -   aa 

>dpe-mir-287 (-19.00)   [dpe-miR-287:52-72]

-a    ug    uggggccugaa     gc           a 
  ugug  agug           auuuu  acacauuuaca u
  ||||  ||||           |||||  ||||||||||| a
  aCAC  UUGC           UAAAA  UGUGUaaaugu a
ca    GU    -----------     GU           u 

>dpe-let-7-2 (-29.62)   [dpe-let-7:11-31]

  u      uU   G     G           guacu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa     u
|| ||||||  ||| ||||| |||||||||||     c
ag ucguuu  uuc aucgu uaacauaucau     a
  u      cu   g     g           gcuag 

>dpe-mir-6-1 (-29.80)   [dpe-miR-6:45-66]

ag             ug     c     ---   c 
  uagagagaauagu  cugug uauau   guc u
  |||||||||||||  ||||| |||||   |||  
  gUUUUUCUUGUCG  GACAC AUaua   cag u
au             GU     U     ucu   c 

>dpe-mir-274 (-41.30)   [dpe-miR-274:16-41]

cg             -UU      C  A  CU        AUgg   g 
  ugcugcaguuuca   UUGUGA CG CA  AACGGGUA    cug c
  |||||||||||||   |||||| || ||  ||||||||    |||  
  acgacguuaaagu   aacacu gc gu  uugcucau    gac c
-a             cau      a  -  uu        -cag   g 

>dpe-mir-306 (-38.80)   [dpe-miR-306:13-34]

-    uu     cU       UU  U        --   - u 
 cacu  gccgg  CAGGUAC  AG GACUCUCA  Aug c u
 ||||  |||||  |||||||  || ||||||||  ||| |  
 gugg  cgguc  guccgug  uc cugagagu  uac g u
g    --     ac       uc  u        uc   a c 

>dpe-mir-309 (-25.50)   [dpe-miR-309:43-64]

      c         ug      u    caac 
auuaua gauaaacuu  uucagu uugc    u
|||||| |||||||||  |||||| ||||     
uaauAU CUGUUUGAA  GGGUCA Gacg    u
      U         GU      C    uucg 

>dpe-mir-263a (-38.14)   [dpe-miR-263a:13-36]

ca     g   a  UA   G     GA   AU       guuuuu 
  ucccg cac GU  AUG CACUG  AGA  UCACggg      c
  ||||| ||| ||  ||| |||||  |||  |||||||       
  agggc gug ua  uac gugau  ucu  agugccc      a
uc     -   g  uc   g     uc   --       aacaua 

>dpe-mir-6-2 (-30.20)   [dpe-miR-6:53-74]

    a             ug   c        uucaa u 
caaa agaagggaacggu  cug ugauguag     g u
|||| |||||||||||||  ||| ||||||||     | u
guuu uUUUUUCUUGUCG  GAC ACUAUauu     c c
    g             GU   -        uaaca g 

>dpe-mir-12 (-30.90)   [dpe-miR-12:7-29]

      UG     U    C          -  gcuuu 
uacggc  AGUAU ACAU AGGUACUGGU gu     a
||||||  ||||| |||| |||||||||| ||      
gugccg  ucaua ugua uucaugacca ca     a
      ca     u    -          a  accua 

>dpe-mir-100-1 (-29.60)   [dpe-miR-100:12-33]

-c    a     AA        U   AA      - u uuu 
  cauu acaga  CCCGUAAU CCG  CUUGUG c g   u
  |||| |||||  |||||||| |||  |||||| | |    
  guaa ugucu  ggguauua ggc  gaacau g c   a
ac    c     ga        c   ca      u u uau 

>dpe-mir-92a (-38.00)   [dpe-miR-92a:53-74]

ua   a           a     -     u   c    uacau 
  gag uugcccguagg cggga aggug caa guuu     u
  ||| ||||||||||| ||||| ||||| ||| ||||      
  uuc ggcgggUAUCC GCCCU UUCAC GUU Caaa     u
ug   -           G     G     -   A    caagu 

>dpe-mir-316 (-29.00)   [dpe-miR-316:16-37]

      -    c   u           G   -A   G    uuau 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uua gcggaaaaagg gaa  gac gcaa    c
      u    u   u           -   ag   a    cuag 

>dse-mir-6-1 (-25.70)   [dse-miR-6:47-68]

ag             ug     c    ag uaau 
  uagagggaauagu  cugug ugua  u    a
  |||||||||||||  ||||| ||||  |    u
  gUUUUUCUUGUCG  GACAC AUau  a    a
au             GU     U    cu uacc 

>dse-mir-12 (-31.30)   [dse-miR-12:7-29]

      UG     U   U           -  gccug 
uacggu  AGUAU ACA CAGGUACUGGU gu     a
||||||  ||||| ||| ||||||||||| ||      
gugccg  ucaua ugu guucaugacca ca     a
      ca     c   -           a  accua 

>dse-mir-280 (-25.60)   [dse-miR-280:10-36]

-u      --ua     U   G                --A      
  ggcuuu    UGUAU UAC UUGCAUAUGAAAUGAU   uuuau 
  ||||||    ||||| ||| ||||||||||||||||   |||| a
  cuggag    acgua aug gacguauauuuuauua   aaaug 
uc      cuga     u   -                gac      

>dse-mir-263a (-36.26)   [dse-miR-263a:13-36]

ga     a   a  UA   G     GA   AU       guaauu 
  ucucg cac GU  AUG CACUG  AGA  UCACggg      u
  ||||| ||| ||  ||| |||||  |||  |||||||      u
  agagc gug ua  uac gugau  ucu  agugccc      u
ua     -   g  uc   g     uc   --       aacaua 

>dse-mir-79 (-37.20)   [dse-miR-79:57-78]

ag   -  uu    u        cgc       g     --   au 
  cug ac  gcca ugcuuugg   uuuagcu uauga  uag  u
  ||| ||  |||| ||||||||   ||||||| |||||  |||  u
  gac ug  cggu ACGAAACC   AGAUCGA AUacu  auc  a
ua   g  uu    U        AUU       A     uc   aa 

>dse-mir-287 (-19.50)   [dse-miR-287:43-63]

ug  g     - -    --   -gc           a 
  ua ggucg g aaau  uuu   acacauuuaca u
  || ||||| | ||||  |||   ||||||||||| a
  gu ucagC C UUUG  AAA   UGUGUaaaugu a
-a  g     A G    CU   AGU           u 

>dse-mir-7 (-33.90)   [dse-miR-7:15-37]

        u     U       U  U     U      uggu u 
gagugcau ccgua GGAAGAC AG GAUUU GUUGUu    c u
|||||||| ||||| ||||||| || ||||| ||||||    |  
uuuacgug ggcau ucuucug uc cuaaa uaacaa    g u
        c     -       u  c     -      uaau g 

>dse-mir-8 (-31.42)   [dse-miR-8:53-75]

        cu uu -       -   g     c      uccuu 
aaggacau  g  c acaucuu acc ggcag auuaga     u
||||||||  |  | ||||||| ||| ||||| ||||||     u
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu     u
        -- cu C       A   A     A      caaaa 

>dse-mir-87 (-38.80)   [dse-miR-87:59-79]

--        auu        -u  c     g     ------cu   a 
  cacauuuc   cgcgccug  au uugcu aaccg        gcc u
  ||||||||   ||||||||  || ||||| |||||        ||| c
  guguaaag   GUGUGGAC  UA AACGA UUggc        cgg a
uu        agu        UU  A     G     cuagcaac   u 

>dse-mir-92b (-33.64)   [dse-miR-92b:57-78]

aa  u   - uga         u c c     uu      ugccuu 
  cg cac c   uguaggccg g c agugc  auuugu      u
  || ||| |   ||||||||| | | |||||  ||||||       
  gc gug g   aCGUCCGGC C G UCACG  UAAaca      u
ac  u   a -ug         C U A     -U      uaaagc 

>dse-bantam (-25.50)   [dse-bantam:52-74]

au     uac    c          uu      g   -  uu 
  uugac   gaaa cgguuuucga  ugguuu acu gu  u
  |||||   |||| ||||||||||  |||||| ||| ||  u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga ca  c
--     ---    A          UU      G   a  ua 

>dse-mir-210 (-37.82)   [dse-miR-210:52-72]

aa   -g     ugc        gc   -         uuaga 
  ggu  cuuau   agcugcug  cac ugcacaaga     c
  |||  |||||   ||||||||  ||| |||||||||     u
  ccg  gaaug   UCGGCGAC  GUG GCGUGUUcu     u
ua   ga     uuA        -A   U         cagaa 

>dse-mir-2c (-28.60)   [dse-miR-2c:63-85]

    au    c  u       -      aag     aagaaagauauuucu 
ucgu  cuua uu caauguc aucaaa   ggcug               g
||||  |||| || ||||||| ||||||   |||||                
agcg  gagu aa guuaCGG UAGUUU   CCGAC               c
    ac    -  c       G      CGA     ACUAUgcuaaguuua 

>dse-mir-276b (-39.30)   [dse-miR-276b:57-78]

ac   -      uuua   uc    a     a           uuccu 
  cga agucuu    cca  agcg gguau gaguuccuacg     a
  ||| ||||||    |||  |||| ||||| |||||||||||      
  gcu ucagga    ggu  UCGU CCAUA UUCAAGGAUgc     u
ca   g      ----   UC    G     A           ugacu 

>dse-mir-310 (-33.30)   [dse-miR-310:54-75]

     -aa       c   a    uc     u       u   c 
aacau   acauuug agg cggg  gugug cagugua uua u
|||||   ||||||| ||| ||||  ||||| ||||||| ||| u
uugua   uguaaaU UCC GCCC  CACAC GUUAUau aau c
     acc       U   G    UU     -       c   u 

>dse-mir-2b-1 (-28.60)   [dse-miR-2b:48-70]

  u    ug         -    g    ----c      u 
cu caac  ucuucaaag uggc guga     auguug c
|| ||||  ||||||||| |||| ||||     ||||||  
gg guug  AGGAGUUUC ACCG CACU     uauaac a
  u    CG         G    A    AUacu      a 

>dse-mir-278 (-37.20)   [dse-miR-278:57-78]

gu      acgg     c       u     a  a     g   cc 
  aauggu    ugcga cggauga gguuc ca cgacc ugu  u
  ||||||    ||||| ||||||| ||||| || ||||| |||  u
  uuaccg    augUU GCCUGCU UCAGG GU GCUgg gca  u
gu      --ca     U       U     -  G     -   aa 

>dse-mir-281-2 (-32.60)   [dse-miR-281-2*:15-36] [dse-miR-281:60-82]

     u  gaa ug        -UA     C      ---ca    aa 
cgaau gu   a  AAGAGAGC   UCCGU GACAGU     aguu  g
||||| ||   |  ||||||||   ||||| ||||||     ||||   
gcuua ca   U  UUCUCUCG   AGGUA CUGUca     uuag  a
     -  aua GU        UUA     -      uaaug    cc 

>dse-mir-2b-2 (-36.90)   [dse-miR-2b:54-76]

       a          -         a   --uuu  cuu 
uuguguc uucuucaaag ugguuguga aug     gc   u
||||||| |||||||||| ||||||||| |||     ||    
agcgcag GAGGAGUUUC ACCGACACU Uac     cg   u
       C          G         A   uuauc  uau 

>dse-mir-10 (-31.00)   [dse-miR-10:9-29]

     ucu   -  G    U             auacu 
ccacg   ACC CU UAGA CCGAAUUUGUuuu     a
|||||   ||| || |||| |||||||||||||      
ggugu   ugg ga aucu ggcuuaaacagga     g
     guu   a  g    u             auuuc 

>dse-mir-92a (-38.00)   [dse-miR-92a:55-76]

aa  ug   uu        a     -     u   c    -ug a 
  ua  aau  cccguagg cggga aggug caa guuu   c u
  ||  |||  |||||||| ||||| ||||| ||| ||||   | u
  au  uug  gggUAUCC GCCCU UUCAC GUU Caaa   g u
ua  gu   gc        G     G     -   A    uaa c 

>dse-mir-13a (-27.20)   [dse-miR-13a:48-69]

    u     c      -        a   --uc  cu 
uacg aacuc ucaaag gguuguga aug    ga  a
|||| ||||| |||||| |||||||| |||    ||   
gugc uUGAG AGUUUU CCGACACU Uac    cu  u
    u     U      A        A   ucau  au 

>dse-mir-34 (-37.50)   [dse-miR-34:14-35]

ug   a  -   uu        U  U   C        --ua c    ua 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug    g caau  u
  ||| || |||  |||||||| || ||| ||||||||    | ||||  u
  cga ac gcg  gccgucac uc auc accgacac    c guug  g
--   -  a   cc        u  u   -        uuaa a    cc 

>dse-mir-11 (-32.60)   [dse-miR-11:48-68]

       u         ucu      ccc   u  acu 
gcacuug caagaacuu   cuguga   gcg gu   u
||||||| |||||||||   ||||||   ||| ||    
cgugagu GUUCUUGAG   GACACU   Cgc cg   a
       C         UCU      --A   -  aaa 

>dse-mir-317 (-38.60)   [dse-miR-317:56-79]

    --a  u         aua    --     c      u aa  a 
augc   ac gccauuggg   cacc  cugug ucgcuu g  ug a
||||   || |||||||||   ||||  ||||| |||||| |  || a
uacg   ug cggUGACCU   GUGG  GACAC AGUgaa c  ac u
    guu  c         AUG    UC     A      - ga  g 

>dse-mir-305 (-24.50)   [dse-miR-305:8-30]

     cu U         U  G     CU  u  guc 
caugu  A UGUACUUCA CA GUGCU  Gg gu   u
|||||  | ||||||||| || |||||  || ||    
guaua  u acaugaagu gu cacgg  cc ca   c
     ac c         u  a     --  -  aug 

>dse-mir-276a (-38.62)   [dse-miR-276a:54-75]

cc      uug   uc    a     ag          uucau 
  ugguuu   cca  agcg gguau  aguuccuacg     u
  ||||||   |||  |||| |||||  ||||||||||     a
  accaga   ggu  UCGU CCAUA  UCAAGGAUgc     u
aa      --a   UC    G     CU          ucaaa 

>dse-mir-282 (-42.30)   [dse-miR-282:13-40]

a    -    -uuaA           AC      U      Ugcau   a 
 guuu ccuu     AUCUAGCCUCU  UAGGCU UGUCUG     ucg a
 |||| ||||     |||||||||||  |||||| ||||||     ||| a
 caag ggaa     uggauuggaga  auccga acagac     agc g
a    u    ccaug           au      u      ----u   c 

>dse-mir-308 (-24.00)   [dse-miR-308:42-63]

           u       u    uuuc   u 
cucgcaguaua uuuugug uuug    guu u
||||||||||| ||||||| ||||    |||  
GAGUGUCAUAU AGGACAC AAac    caa g
           U       U    ---u   c 

>dse-mir-277 (-40.30)   [dse-miR-277:59-81]

--   a g       gc  -   gu    -            c  aaa u 
  uug a guuuugg  ug cgu  cagg agugcauuugca ug   c a
  ||| | |||||||  || |||  |||| |||||||||||| ||   | u
  aac u caagacc  AC GCA  GUCU UCACGUAAAUgu ac   g c
cu   a g       uu  A   UG    A            -  gaa u 

>dse-mir-314 (-34.00)   [dse-miR-314:70-90]

u  u       g     u   au     uaguu    ---a       cg 
 cg aacuugu uggcu cga  guacc     gagg    aaagucc  u
 || ||||||| ||||| |||  |||||     ||||    |||||||   
 GC UUGAAUA ACCGA GCU  UAUgg     cucc    uuuuagg  g
G  -       -     -   --     ----u    auug       cu 

>dse-mir-100 (-27.10)   [dse-miR-100:12-33]

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   a
ac    c     ga       ac   ca      u u uau 

>dse-mir-286 (-25.90)   [dse-miR-286:65-87]

--         aaug    a   -    a     ucuuuuuccaauaaag 
  uuaaaauug    gcga ugu cggu ugguc                g
  |||||||||    |||| ||| |||| |||||                 
  aauuuuaau    UGCU ACA GCCA AUCAG                u
aa         aUCG    C   A    G     Ugaagcgaacuagcuu 

>dse-mir-284 (-41.70)   [dse-miR-284:64-92]

--         c              a   uguagccugugagggcaag 
  guugcaguu cuggaauuaaguug cug                   g
  ||||||||| |||||||||||||| |||                   c
  cggcGUUAA GACCUUAGUUCAAC GAC                   u
cc         C              -   UGAAGUccucgucauaagu 

>dse-mir-311 (-24.60)   [dse-miR-311:52-73]

   a    au       -a    au   a u      u   uu 
ucu gaua  uuuucgg  cggu  aug g caaugu uuc  u
||| ||||  |||||||  ||||  ||| | |||||| |||   
aga cuau  aaaAGUC  GCCA  UAC C GUUAUa aag  u
   a    --       CG    CU   A -      u   cu 

>dse-mir-9a (-29.00)   [dse-miR-9a:10-32]

    -     U       UAU      G     -  gau 
gcua uguug CUUUGGU   CUAGCU UAUGA gu   a
|||| ||||| |||||||   |||||| ||||| ||    
cgau auaau gaagcca   gaucga auacu ca   a
    u     u       uuc      a     g  aua 

>dse-mir-304 (-33.30)   [dse-miR-304:12-34]

    ca    a       AAU       U     c -   u  g 
gcag  uuga UAAUCUC   UUGUAAA GUGAG g guu ga c
||||  |||| |||||||   ||||||| ||||| | ||| ||  
cguc  agcu guuagag   aacguuu cacuc c cag uu c
    ag    c       guu       -     a g   u  a 

>dse-mir-33 (-33.20)   [dse-miR-33:15-35]

cg      a    a  -G       U   C C        ucc a 
  gagaug cacg AG  UGCAUUG AGU G AUUGucug   c a
  |||||| |||| ||  ||||||| ||| | ||||||||   |  
  cuuuac gugu uc  acgugac uca c uaacggac   g u
ca      -    c  ga       u   a a        uuc u 

>dse-mir-281-1 (-32.51)   [dse-miR-281-1*:15-36] [dse-miR-281:58-80]

      ag  a           -UG     C      ccagaaac 
cgaaua  ug auaAAGAGAGC   UCCGU GACAGU        c
||||||  || |||||||||||   ||||| ||||||        a
gcuuau  au UGUUUCUCUCG   AGGUA CUGUca        u
      -a  a           UUA     -      cuauaauu 

>dse-mir-309 (-20.10)   [dse-miR-309:44-65]

      c       c   uu    u   c aau 
auuaua gacaaac uug  cggu uug c   u
|||||| ||||||| |||  |||| ||| |   u
uaauAU CUGUUUG AAU  GUCA Gac g   c
      C       A   GG    C   c aac 

>dse-mir-306 (-43.12)   [dse-miR-306:14-35] [dse-miR-306*:51-72]

--      c au   U       UU            ugccu 
  uccacu g  ggc CAGGUAC  AGUGACUCUCAA     u
  |||||| |  ||| |||||||  ||||||||||||     u
  ggguga c  uCG GUCCGUG  UCACUGGGGGuu     g
ca      - cg   U       UC            uuaca 

>dse-mir-288 (-31.12)   [dse-miR-288:66-88]

     a      aauuagcg   ca      --u       auaauuaa    g 
cgguc ugucgu        gag  cggcau   gccggcg        ugac g
||||| ||||||        |||  ||||||   |||||||        ||||  
gccgg acaGUA        CUU  GCUGUA   Ugguugc        acug u
     c      ---CUUUA   UA      CUU       --------    g 

>dse-mir-289 (-29.50)   [dse-miR-289:15-40]

ag     a  -aa      UA         AGC  GCG         ccu 
  uuuac gu   aaUAAA  UUUAAGUGG   CU   ACUccaguc   c
  ||||| ||   ||||||  |||||||||   ||   |||||||||   u
  aaaug ca   uuguuu  gaguucacu   ga   uggggucag   g
ga     -  cgg      gc         ---  --a         uca 

>dse-mir-279 (-36.40)   [dse-miR-279:60-81]

au         u          g     c  uguu     uug   u 
  acugcuguu uuagugggug ggguc ag    ucaca   auu u
  ||||||||| |||||||||| ||||| ||    |||||   ||| c
  ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   uga u
cu         u          A     A  ----     uua   u 

>dse-mir-285 (-30.64)   [dse-miR-285:64-85]

--  aa       -a     ga    u      a    --uaucag  aaa 
  uc  aucgaag  acuga  ucga uggugc uaga        ga   c
  ||  |||||||  |||||  |||| |||||| ||||        ||    
  ag  uaguuuu  UGACU  AGCU ACCACG AUcu        cu   c
aa  aa       CG     AA    U      -    caacuuaa  cac 

>dse-mir-312 (-21.20)   [dse-miR-312:43-64]

gu      u    a    g     ucu   uuuu 
  uuuggu cguc caag gcaau   gca    u
  |||||| |||| |||| |||||   |||     
  AAGCCG GCAG GUUC CGUUA   Ugu    a
uu      -    A    A     ---   ucaa 

>dse-mir-307 (-40.10)   [dse-miR-307:56-75]

u        -   a         ccu  g       -u    uc 
 gucuugcu uug cucacucaa   gg ugugaug  uauu  g
 |||||||| ||| |||||||||   || |||||||  ||||  a
 caggacga agc GAGUGAGUU   CC ACACUac  augg  u
a        u   -         CCU  A       cu    ua 

>dse-mir-9c (-27.30)   [dse-miR-9c:13-34]

    uu    uuU         UCU    G     u  uuc   c 
auuu  gcug   CUUUGGUAU   AGCU UAGAu gu   acg a
||||  ||||   |||||||||   |||| ||||| ||   ||| c
uaaa  cgac   gaaaccaua   ucga aucua ua   ugu a
    uu    cuc         uuu    a     c  -ua   u 

>dse-mir-14 (-28.30)   [dse-miR-14:41-61]

        c    cg      c     gcu 
ugugggag gaga  gggacu acugu   u
|||||||| ||||  |||||| |||||   a
auAUCCUC CUCU  UUCUGA Ugaua   u
        U    UU      C     aau 

>dse-mir-1 (-36.20)   [dse-miR-1:54-75]

ca   uuu  --ga            c        a   -   au 
  gcc   ga    guuccaugcuuc uugcauuc aua guu  a
  |||   ||    |||||||||||| |||||||| ||| |||  c
  cgg   cu    cGAGGUAUGAAG AAUGUAAG Uau cga  u
ag   --u  aaag            A        G   a   ac 

>dse-mir-315 (-34.40)   [dse-miR-315:12-33]

       auaa   UG          A       cuu      
cacuuau    UUU  AUUGUUGCUC GAAAGCc   auugu 
|||||||    |||  |||||||||| |||||||   |||| a
gugaaua    aaa  uaauaacgag cuuucgg   ugacc 
       gacc   gu          -       --u      

>dse-mir-13b-2 (-26.20)   [dse-miR-13b:44-65]

uc   g          a      gcua      uu 
  aac cgucaaaaug cuguga    ugugga  u
  ||| |||||||||| ||||||    ||||||   
  uUG GCAGUUUUAC GACACU    AUacuu  g
gu   A          C      ----      ca 

>dse-mir-318 (-24.90)   [dse-miR-318:43-64]

u          c   c        uu   caca 
 uuaugggaua aca aguucagu  ugu    c
 |||||||||| ||| ||||||||  |||     
 aguACUCUAU UGU UCGGGUCA  acg    u
g          U   U        CU   aacu 

>dse-mir-13b-1 (-21.20)   [dse-miR-13b:43-64]

   -ug           u      acu    uauu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    g
   uUG           C      ---    uaac 

>dse-mir-316 (-29.00)   [dse-miR-316:16-37]

      -    c   u           G   -A   G    ucau 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uua gcggaaaaagg gaa  gac gcaa    u
      u    u   u           -   ag   a    cacc 

>dse-mir-2a-3 (-32.90)   [dse-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g aac 

>dse-mir-275 (-43.50)   [dse-miR-275:55-77]

aa    c     u         -a    ug   gg    u  uuu 
  gucu cuacc ugcgcgcua  ucag  acc  ggcu gu   u
  |||| ||||| |||||||||  ||||  |||  |||| ||   u
  caga ggugg GCGCGCGAU  AGUC  UGG  CUga ca   a
ua    c     u         GA    CA   -A    -  uau 

>dse-mir-184 (-33.70)   [dse-miR-184*:16-36] [dse-miR-184:55-76]

cc    c  u  ua         -     U  -  CCG   gcau 
  ggug au cg  cCCUUAUCA UUCUC CG CC   ugu    u
  |||| || ||  ||||||||| ||||| || ||   |||     
  ccac ua gc  GGGAAUAGU AAGAG GC GG   aca    u
aa    -  u  uC         C     -  A  Uca   gaaa 

>dse-mir-31b (-37.40)   [dse-miR-31b:14-35]

    -     aau     A     UC  A       agagcacagcggaucgagccucuuauc 
caaa uaaug   uUGGC AGAUG  GG AUAGCUG                           g
|||| |||||   ||||| |||||  || |||||||                           u
guuu auuac   aacug ucuac  cc uaucggc                           c
    c     guu     a     -u  g       gaaaaguuuuuauuaguguaaaaaagc 

>dse-mir-219 (-33.90)   [dse-miR-219:19-41]

ua    -a     u   ua    U     AA           ----   a 
  auuc  auuuu agc  UGAU GUCCA  CGCAAUUCUUG    uug u
  ||||  ||||| |||  |||| |||||  |||||||||||    ||| a
  uaag  uaaag ucg  gcua cgggu  gcguugggaac    aac u
ca    aa     c   gc    -     ca           uuau   u 

>dse-mir-31a (-40.30)   [dse-miR-31a:14-36]

        ua       A     U         UGAcguugaaaa 
uccguugg  aauUGGC AGAUG CGGCAUAGC            g
||||||||  ||||||| ||||| |||||||||            c
agguaacu  uugacug ucuac gucguaucg            g
        ug       a     -         cgagaaguuuua 

>dse-mir-125 (-31.70)   [dse-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dse-mir-9b (-38.40)   [dse-miR-9b:15-37]

u   --u          C         UUU    G     u   u 
 gca   auuauuuggU UUUGGUGAU   AGCU UAUGg gua a
 |||   |||||||||| |||||||||   |||| ||||| |||  
 cgu   ugguaaacca aaaccauua   ucga auacc uau a
a   cuu          a         -uu    g     u   g 

>dse-mir-274 (-41.20)   [dse-miR-274:16-41]

ug              --       C  A  CU           gu   a 
  uguugcaguuucgU  UUUGUGA CG CA  AACGGGUAAUu  uug u
  ||||||||||||||  ||||||| || ||  |||||||||||  ||| c
  acgacguuaaagua  aaacacu gc gu  uugcucauuag  gac a
-a              cu       a  -  uu           --   c 

>dse-mir-5 (-23.40)   [dse-miR-5:3-25]

--ua       C               ag   u 
    AAAGGAA GAUCGUUGUGAUAUG  uug u
    ||||||| |||||||||||||||  |||  
    uuuccuu uuagugacacuauac  agc c
aaua       -               -a   c 

>dse-mir-2a-2 (-32.90)   [dse-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g aac 

>dse-mir-263b (-37.70)   [dse-miR-263b:16-36]

uu    -ac       C        G G     U     -u   c 
  gcug   uuugagu UUGGCACU G AGAAU CACag  uga u
  ||||   ||||||| |||||||| | ||||| |||||  ||| u
  cggc   aaauuca aaccgugg c ucuug guguc  auu g
uu    caa       a        g g     -     uu   a 

>dse-mir-313 (-11.46)   [dse-miR-313:43-64]

--uucu    c c uu  g   c    guuuuu 
      gcug g a  gg gca uacu      u
      |||| | |  || ||| ||||      u
      CGAC C U  UC CGU AUga      u
aaAUUC    A - UU  A   U    guuaau 

>dse-mir-iab-4 (-25.20)   [dse-miR-iab-4-5p:7-28] [dse-miR-iab-4-3p:41-64]

    -aa            U    C   Ag  u 
ucgu   ACGUAUACUGAA GUAU CUG  ug a
||||   |||||||||||| |||| |||  || u
agca   UGCAUAUGACUU CAUA GGC  au c
    CAA            C    U   cu  c 

>dse-mir-133 (-40.20)   [dse-miR-133:55-76]

cu     -    ug             cauc  gu     -  guu 
  gcaac gcug  uguagcugguuga    gg  cagau cu   u
  ||||| ||||  |||||||||||||    ||  ||||| ||    
  cguug ugac  aUGUCGACCAACU    CC  GUUua ga   u
gu     g    cg             -UCC  UG     c  auu 

>dse-mir-2a-1 (-41.90)   [dse-miR-2a:49-71]

         -      -         a    auuuc   u 
gcugggcuc ucaaag ugguuguga augc     cgc u
||||||||| |||||| ||||||||| ||||     ||| u
cgauuCGAG AGUUUC ACCGACACU Uacg     gcg g
         U      G         A    -----   c 

>dse-mir-4 (-22.30)   [dse-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag    - uu 
u  caau a  uuc  uggu guc agc     guga c  u
|  |||| |  |||  |||| ||| |||     |||| |   
g  guug u  aAG  ACCA CAG UCG     UAcu g  u
 gu    c ug   UU    A   A   --AAA    a cc 

>dse-mir-3 (-28.70)   [dse-miR-3:43-64]

    c         uc    g    u    uuc 
gauc ugggaugca  uugu cagu augu   a
|||| |||||||||  |||| |||| ||||   a
cuag ACUCUGUGU  AACG GUCA Uaca   u
    a         GA    G    C    cuc 

>dse-let-7 (-30.44)   [dse-let-7:11-31]

  u      uU   G     G           guaauu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa      a
|| ||||||  ||| ||||| |||||||||||       
ag ucguuu  uuc aucgu uaacauaucau      c
  u      cu   g     g           acuaca 

>dse-mir-283 (-29.55)   [dse-miR-283:15-35]

ac     uc      AA           U         agcuaagccu 
  gauuc  aaaggU  AUAUCAGCUGG AAUUCUggg          a
  |||||  ||||||  ||||||||||| |||||||||           
  uuaag  uuuuca  uaugguugacu uuaaggcuc          a
--     uu      gc           -         acaaaguaua 

>dse-mir-124 (-31.30)   [dse-miR-124:49-71]

ua     uu   c      c      ag    a    uau 
  cguuu  cuc ugguau cacugu  gccu uaug   u
  |||||  ||| |||||| ||||||  |||| ||||   u
  gcaag  gaG ACCGUA GUGGCG  CGGA AUac   c
ac     -c   A      A      CA    -    cac 

>dse-mir-6-2 (-23.60)   [dse-miR-6:48-69]

     cc       uu ug   c       -uua  g 
uaacc  agggaac  c  cug ugauaua    uu a
|||||  |||||||  |  ||| |||||||    ||  
guugg  UUUCUUG  G  GAC ACUAUau    aa a
     UU       UC GU   -       ccuc  a 

>dse-mir-6-3 (-30.13)   [dse-miR-6:53-74]

    a             ug   a        uucgaaa 
caaa agaagggaacggu  cug ugauguag       c
|||| |||||||||||||  ||| ||||||||       u
guuu uUUUUUCUUGUCG  GAC ACUAUauu       c
    g             GU   -        uaacacu 

>dsi-mir-34 (-37.50)   [dsi-miR-34:14-35]

ug   a  -   uu        U  U   C        --ua c    ua 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug    g caau  u
  ||| || |||  |||||||| || ||| ||||||||    | ||||  u
  cga ac gcg  gccgucac uc auc accgacac    c guug  g
--   -  a   cc        u  u   -        uuaa a    cc 

>dsi-mir-310 (-33.00)   [dsi-miR-310:54-75]

     -aa       c   a    uc     u       u   c 
aacau   acauuug agg cggg  gugug caguaua uua u
|||||   ||||||| ||| ||||  ||||| ||||||| ||| u
uugua   uguaaaU UCC GCCC  CACAC GUUAUau gau c
     acc       U   G    UU     -       c   u 

>dsi-mir-4 (-22.30)   [dsi-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag    - uu 
u  caau a  uuc  uggu guc agc     guga c  u
|  |||| |  |||  |||| ||| |||     |||| |   
g  guug u  aAG  ACCA CAG UCG     UAcu g  u
 gu    c ug   UU    A   A   --AAA    a cc 

>dsi-mir-9a (-29.00)   [dsi-miR-9a:10-32]

    -     U       UAU      G     -  gau 
gcua uguug CUUUGGU   CUAGCU UAUGA gu   a
|||| ||||| |||||||   |||||| ||||| ||    
cgau auaau gaagcca   gaucga auacu ca   a
    u     u       uuc      a     g  aua 

>dsi-mir-87 (-38.80)   [dsi-miR-87:59-79]

--        auu        -u  c     g     ------cu   a 
  cacauuuc   cgcgccug  au uugcu aaccg        gcc u
  ||||||||   ||||||||  || ||||| |||||        ||| c
  guguaaag   GUGUGGAC  UA AACGA UUggc        cgg a
uu        agu        UU  A     G     cuagcaac   u 

>dsi-mir-13b-2 (-26.20)   [dsi-miR-13b:44-65]

uc   g          a      gcua      uu 
  aac cgucaaaaug cuguga    ugugga  u
  ||| |||||||||| ||||||    ||||||   
  uUG GCAGUUUUAC GACACU    AUacuu  g
gu   A          C      ----      ca 

>dsi-mir-125 (-31.70)   [dsi-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dsi-mir-124 (-31.30)   [dsi-miR-124:49-71]

ua     uu   c      c      ag    a    uau 
  cguuu  cuc ugguau cacugu  gccu uaug   u
  |||||  ||| |||||| ||||||  |||| ||||   u
  gcaag  gaG ACCGUA GUGGCG  CGGA AUac   c
ac     -c   A      A      CA    -    cac 

>dsi-mir-14 (-28.30)   [dsi-miR-14:41-61]

        c    cg      c     gcu 
ugugggag gaga  gggacu acugu   u
|||||||| ||||  |||||| |||||   a
auAUCCUC CUCU  UUCUGA Ugaua   u
        U    UU      C     aau 

>dsi-mir-210 (-37.82)   [dsi-miR-210:52-72]

aa   -g     ugc        gc   -         uuaga 
  ggu  cuuau   agcugcug  cac ugcacaaga     c
  |||  |||||   ||||||||  ||| |||||||||     u
  ccg  gaaug   UCGGCGAC  GUG GCGUGUUcu     u
ua   ga     uuA        -A   U         cagaa 

>dsi-mir-277 (-34.52)   [dsi-miR-277:59-81]

--   a g       gc  -   gu    -            c  aaacu 
  uug a guuuugg  ug cgu  cagg agugcauuugca ug     a
  ||| | |||||||  || |||  |||| |||||||||||| ||     u
  aac u caagacc  AC GCA  GUUU UUACGUAAAUgu ac     c
cu   a g       uu  A   UG    A            -  gaaac 

>dsi-mir-263a (-36.26)   [dsi-miR-263a:13-36]

ga     g   a  UA   G     GA   AU       guaauu 
  ucucg cac GU  AUG CACUG  AGA  UCACggg      u
  ||||| ||| ||  ||| |||||  |||  |||||||      u
  agagc gug ua  uac gugau  ucu  agugccc      u
ua     -   g  uc   g     uc   --       aacaua 

>dsi-mir-12 (-31.30)   [dsi-miR-12:7-29]

      UG     U   U           -  gccug 
uacggu  AGUAU ACA CAGGUACUGGU gu     a
||||||  ||||| ||| ||||||||||| ||      
gugccg  ucaua ugu guucaugacca ca     a
      ca     c   -           a  accua 

>dsi-mir-2a-1 (-41.90)   [dsi-miR-2a:49-71]

         -      -         a    auuuc   u 
gcugggcuc ucaaag ugguuguga augc     cgc u
||||||||| |||||| ||||||||| ||||     ||| u
cgauuCGAG AGUUUC ACCGACACU Uacg     gcg g
         U      G         A    -----   c 

>dsi-mir-2c (-28.60)   [dsi-miR-2c:63-85]

    au    c  u       -      aag     aagaaagauauuucu 
ucgu  cuua uu caauguc aucaaa   ggcug               g
||||  |||| || ||||||| ||||||   |||||                
agcg  gagu aa guuaCGG UAGUUU   CCGAC               c
    ac    -  c       G      CGA     ACUAUgcuaaguuua 

>dsi-mir-iab-4 (-25.20)   [dsi-miR-iab-4-5p:7-28] [dsi-miR-iab-4-3p:41-64]

    -aa            U    C   Ag  u 
ucgu   ACGUAUACUGAA GUAU CUG  ug a
||||   |||||||||||| |||| |||  || u
agca   UGCAUAUGACUU CAUA GGC  au c
    CAA            C    U   cu  c 

>dsi-mir-13b-1 (-21.20)   [dsi-miR-13b:43-64]

   -ug           u      acu    uauu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    g
   uUG           C      ---    uaac 

>dsi-mir-311 (-21.10)   [dsi-miR-311:54-75]

   a   cau       -a    au   a u      u   uuu 
ucu gau   uuuucgg  cggu  aug g caauau uuu   u
||| |||   |||||||  ||||  ||| | |||||| |||    
aga cua   aaaAGUC  GCCA  UAC C GUUAUa aag   u
   a   --u       CG    CU   A -      u   cuu 

>dsi-mir-2b-1 (-28.60)   [dsi-miR-2b:48-70]

  u    ug         -    g    ----c      u 
cu caac  ucuucaaag uggc guga     auguug c
|| ||||  ||||||||| |||| ||||     ||||||  
gg guug  AGGAGUUUC ACCG CACU     uauaac a
  c    CG         G    A    AUacu      a 

>dsi-mir-286 (-27.50)   [dsi-miR-286:66-88]

--         aaug    a   -    a     ucuuuuuccaaagaaa 
  uuaaaauug    gcga ugu cggu ugguc                g
  |||||||||    |||| ||| |||| |||||                g
  aauuuuaau    UGCU ACA GCCA AUCAG                u
aa         aUCG    C   A    G     Ugaagcgaacuagcuu 

>dsi-mir-305 (-23.80)   [dsi-miR-305:8-29]

     cu U         U  -     CU  u  guc 
caugu  A UGUACUUCA CA GUGCU  Gg gu   u
|||||  | ||||||||| || |||||  || ||    
guaua  u acaugaagu gu cacgg  cc ca   c
     ac c         c  a     --  -  aug 

>dsi-bantam (-25.50)   [dsi-bantam:52-74]

au     uac    c          uu      g   -  uu 
  uugac   gaaa cgguuuucga  ugguuu acu gu  u
  |||||   |||| ||||||||||  |||||| ||| ||  u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga ca  c
--     ---    A          UU      G   a  ua 

>dsi-mir-3 (-28.70)   [dsi-miR-3:43-64]

    c         uc    g    u    ucc 
gauc ugggaugca  uugu cagu augu   a
|||| |||||||||  |||| |||| ||||   a
cuag ACUCUGUGU  AACG GUCA Uaca   u
    a         GA    G    C    cuc 

>dsi-mir-317 (-38.60)   [dsi-miR-317:56-79]

    --a  u         aua    --     c      u aa  a 
augc   ac gccauuggg   cacc  cugug ucgcuu g  ug a
||||   || |||||||||   ||||  ||||| |||||| |  || a
uacg   ug cggUGACCU   GUGG  GACAC AGUgaa c  ac u
    guu  c         AUG    UC     A      - ga  g 

>dsi-mir-314 (-34.00)   [dsi-miR-314:70-90]

u  u       g     u   au     uaguu    ---a       cg 
 cg aacuugu uggcu cga  guacc     gagg    aaagucc  u
 || ||||||| ||||| |||  |||||     ||||    |||||||   
 GC UUGAAUA ACCGA GCU  UAUgg     cucc    uuuuagg  g
G  -       -     -   --     ----u    auug       cu 

>dsi-mir-11 (-32.60)   [dsi-miR-11:48-68]

       u         ucu      ccc   u  acu 
gcacuug caagaacuu   cuguga   gcg gu   u
||||||| |||||||||   ||||||   ||| ||    
cgugagu GUUCUUGAG   GACACU   Cgc cg   a
       C         UCU      --A   -  aaa 

>dsi-mir-33 (-33.20)   [dsi-miR-33:15-35]

cg      a    a  -G       U   C C        ucc a 
  gagaug cacg AG  UGCAUUG AGU G AUUGucug   c a
  |||||| |||| ||  ||||||| ||| | ||||||||   |  
  cuuuac gugu uc  acgugac uca c uaacggac   g u
ca      -    c  ga       u   a a        uuc u 

>dsi-mir-1 (-36.20)   [dsi-miR-1:54-75]

ca   uuu  --ga            c        a   -   au 
  gcc   ga    guuccaugcuuc uugcauuc aua guu  a
  |||   ||    |||||||||||| |||||||| ||| |||  c
  cgg   cu    cGAGGUAUGAAG AAUGUAAG Uau cga  u
ag   --u  aaag            A        G   a   ac 

>dsi-mir-219 (-34.60)   [dsi-miR-219:19-41]

ua    -g     u   ua    U     AA           ----   a 
  auuc  auuuu agc  UGAU GUCCA  CGCAAUUCUUG    uug u
  ||||  ||||| |||  |||| |||||  |||||||||||    ||| a
  uaag  uaaag ucg  gcua cgggu  gcguugggaac    aac u
ca    aa     c   gc    -     ca           uuau   u 

>dsi-mir-316 (-29.00)   [dsi-miR-316:16-37]

      -    c   u           G   -A   G    ucau 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uua gcggaaaaagg gaa  gac gcaa    u
      u    u   u           -   ag   a    cacc 

>dsi-mir-315 (-35.50)   [dsi-miR-315:12-33]

       auaa   UG          A       cuu    u 
cacuuau    UUU  AUUGUUGCUC GAAAGCc   auug u
|||||||    |||  |||||||||| |||||||   |||| u
gugaaua    aaa  uaauaacgag cuuucgg   ugac a
       gacc   gu          -       --u    c 

>dsi-mir-263b (-37.70)   [dsi-miR-263b:16-36]

uu    -ac       C        G G     U     -u   c 
  gcug   uuugagu UUGGCACU G AGAAU CACag  uga u
  ||||   ||||||| |||||||| | ||||| |||||  ||| u
  cggc   aaauuca aaccgugg c ucuug guguc  auu g
uu    caa       a        g g     -     uu   a 

>dsi-mir-100 (-27.10)   [dsi-miR-100:12-33]

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   a
ac    c     ga       ac   ca      u u uau 

>dsi-mir-289 (-29.50)   [dsi-miR-289:15-40]

ag     a  -aa      UA         AGC  GCG         ccu 
  uuuac gu   aaUAAA  UUUAAGUGG   CU   ACUccaguc   c
  ||||| ||   ||||||  |||||||||   ||   |||||||||   u
  aaaug ca   uuguuu  gaguucacu   ga   uggggucag   g
ga     -  cgg      gc         ---  --a         uca 

>dsi-mir-313 (-12.30)   [dsi-miR-313:43-64]

--uucu    c c uu  g   c    --    u 
      gcug g a  gg gca uacu  guuu u
      |||| | |  || ||| ||||  |||| u
      CGAC C U  UC CGU AUga  uaaa u
aaAUUC    A - UU  A   U    gu    u 

>dsi-mir-312 (-21.20)   [dsi-miR-312*:5-27] [dsi-miR-312:43-64]

gu      U    A    G     UCU   uuuu 
  uuUGGU CGUC CAAG GCAAU   gca    u
  |||||| |||| |||| |||||   |||     
  AAGCCG GCAG GUUC CGUUA   Ugu    a
uu      -    A    A     ---   ucaa 

>dsi-let-7 (-30.44)   [dsi-let-7:11-31]

  u      uU   G     G           guaauu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa      a
|| ||||||  ||| ||||| |||||||||||       
ag ucguuu  uuc aucgu uaacauaucau      c
  u      cu   g     g           acuaca 

>dsi-mir-308 (-24.00)   [dsi-miR-308:42-63]

           u       u    uuuc   u 
cucgcaguaua uuuugug uuug    guu u
||||||||||| ||||||| ||||    |||  
GAGUGUCAUAU AGGACAC AAac    caa g
           U       U    ---u   c 

>dsi-mir-2a-2 (-32.90)   [dsi-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g aac 

>dsi-mir-31b (-37.40)   [dsi-miR-31b:14-35]

    -     aau     A     UC  A       agagcacagcggaucgagccucuuauc 
caaa uaaug   uUGGC AGAUG  GG AUAGCUG                           g
|||| |||||   ||||| |||||  || |||||||                           u
guuu auuac   aacug ucuac  cc uaucggc                           c
    c     guu     a     -u  g       gaaaaguuuuuauuaguguaaaaaagc 

>dsi-mir-92b (-33.64)   [dsi-miR-92b:57-78]

aa  u   - uga         u c c     uu      ugccuu 
  cg cac c   uguaggccg g c agugc  auuugu      u
  || ||| |   ||||||||| | | |||||  ||||||       
  gc gug g   aCGUCCGGC C G UCACG  UAAaca      u
ac  u   a -ug         C U A     -U      uaaagc 

>dsi-mir-275 (-46.40)   [dsi-miR-275:55-77]

aa    c     u         -a    ug   gg     guuuu 
  gucu cuacc ugcgcgcua  ucag  acc  ggcug     u
  |||| ||||| |||||||||  ||||  |||  |||||      
  caga ggugg GCGCGCGAU  AGUC  UGG  CUgac     u
ua    c     u         GA    CA   -A     auaua 

>dsi-mir-13a (-27.20)   [dsi-miR-13a:48-69]

    u     c      -        a   --uc  cu 
uacg aacuc ucaaag gguuguga aug    ga  a
|||| ||||| |||||| |||||||| |||    ||   
gugc uUGAG AGUUUU CCGACACU Uac    cu  u
    u     U      A        A   ucau  au 

>dsi-mir-304 (-33.30)   [dsi-miR-304:12-34]

    ca    a       AAU       U     c -   u  g 
gcag  uuga UAAUCUC   UUGUAAA GUGAG g guu ga c
||||  |||| |||||||   ||||||| ||||| | ||| ||  
cguc  agcu guuagag   aacguuu cacuc c cag uu c
    ag    c       guu       -     a g   u  a 

>dsi-mir-282 (-42.30)   [dsi-miR-282:13-40]

a    -    -uuaA           AC      U      Ugcau   a 
 guuu ccuu     AUCUAGCCUCU  UAGGCU UGUCUG     ucg a
 |||| ||||     |||||||||||  |||||| ||||||     ||| a
 caag ggaa     uggauuggaga  auccga acagac     agc g
a    c    ccaug           au      u      ----u   c 

>dsi-mir-307 (-40.10)   [dsi-miR-307:56-75]

u        -   a         ccu  g       -u    uc 
 gucuugcu uug cucacucaa   gg ugugaug  uauu  g
 |||||||| ||| |||||||||   || |||||||  ||||  a
 caggacga agc GAGUGAGUU   CC ACACUac  augg  u
a        u   -         CCU  A       cu    ua 

>dsi-mir-2b-2 (-36.90)   [dsi-miR-2b:54-76]

       a          -         a   --uuu  cuu 
uuguguc uucuucaaag ugguuguga aug     gc   u
||||||| |||||||||| ||||||||| |||     ||    
agcgcag GAGGAGUUUC ACCGACACU Uac     cg   u
       C          G         A   uuauc  uau 

>dsi-mir-6-1 (-25.70)   [dsi-miR-6:47-68]

ag             ug     c    ag uuau 
  uagagggaauagu  cugug ugua  u    a
  |||||||||||||  ||||| ||||  |    u
  gUUUUUCUUGUCG  GACAC AUau  a    a
au             GU     U    cu ugcc 

>dsi-mir-31a (-40.30)   [dsi-miR-31a:14-36]

        ua       A     U         UGAcguugaaaa 
uccguugg  aauUGGC AGAUG CGGCAUAGC            g
||||||||  ||||||| ||||| |||||||||            c
agguaacu  uugacug ucuac gucguaucg            g
        ug       a     -         cgagaaguuuua 

>dsi-mir-10 (-31.00)   [dsi-miR-10:9-29]

     ucu   -  G    U             auacu 
ccacg   ACC CU UAGA CCGAAUUUGUuuu     a
|||||   ||| || |||| |||||||||||||      
ggugu   ugg ga aucu ggcuuaaacagga     g
     guu   a  g    u             auuuc 

>dsi-mir-285 (-31.64)   [dsi-miR-285:64-85]

--  ga       -a     ga    u      a    --uaucag  aaa 
  uc  aucgaag  acuga  ucga uggugc uaga        ga   c
  ||  |||||||  |||||  |||| |||||| ||||        ||    
  ag  uaguuuu  UGACU  AGCU ACCACG AUcu        cu   c
aa  aa       CG     AA    U      -    caacuuaa  cac 

>dsi-mir-8 (-31.42)   [dsi-miR-8:53-75]

        cu uu -       -   g     c      uccuu 
aaggacau  g  c acaucuu acc ggcag auuaga     u
||||||||  |  | ||||||| ||| ||||| ||||||     u
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu     u
        -- cu C       A   A     A      caaua 

>dsi-mir-5 (-22.90)   [dsi-miR-5:3-25]

--ua       C              Ga    u 
    AAAGGAA GAUCGUUGUGAUAU  guug u
    ||||||| ||||||||||||||  ||||  
    uuuccuu uuagugacacuaua  caac c
uaua       -              --    c 

>dsi-mir-278 (-37.20)   [dsi-miR-278:57-78]

gu      acgg     c       u     a  a     g   cc 
  aauggu    ugcga cggauga gguuc ca cgacc ugu  u
  ||||||    ||||| ||||||| ||||| || ||||| |||  u
  uuaccg    augUU GCCUGCU UCAGG GU GCUgg gca  u
gu      --ca     U       U     -  G     -   aa 

>dsi-mir-276a (-38.62)   [dsi-miR-276a:54-75]

cc      uug   uc    a     ag          uucau 
  ugguuu   cca  agcg gguau  aguuccuacg     u
  ||||||   |||  |||| |||||  ||||||||||     a
  accaga   ggu  UCGU CCAUA  UCAAGGAUgc     u
aa      --a   UC    G     CU          ucaaa 

>dsi-mir-283 (-29.55)   [dsi-miR-283:15-35]

ac     uc      AA           U         agcuaagccu 
  gauuc  aaaggU  AUAUCAGCUGG AAUUCUggg          a
  |||||  ||||||  ||||||||||| |||||||||           
  uuaag  uuuuca  uaugguugacu uuaaggcuc          a
--     uu      gc           -         acaaaguaua 

>dsi-mir-309 (-20.10)   [dsi-miR-309:44-65]

      c       c   uu    u   c aau 
auuaua gacaaac uug  cggu uug c   u
|||||| ||||||| |||  |||| ||| |   u
uaauAU CUGUUUG AAU  GUCA Gac g   c
      C       A   GG    C   c aac 

>dsi-mir-276b (-39.30)   [dsi-miR-276b:57-78]

ac   -      uuua   uc    a     a           uuccu 
  cga agucuu    cca  agcg gguau gaguuccuacg     a
  ||| ||||||    |||  |||| ||||| |||||||||||      
  gcu ucagga    ggu  UCGU CCAUA UUCAAGGAUgc     u
ca   g      ----   UC    G     A           ugacu 

>dsi-mir-279 (-36.40)   [dsi-miR-279:60-81]

au         u          g     c  uguu     uug   u 
  acugcuguu uuagugggug ggguc ag    ucaca   auu u
  ||||||||| |||||||||| ||||| ||    |||||   ||| c
  ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   uga u
cu         u          A     A  ----     uua   u 

>dsi-mir-288 (-31.12)   [dsi-miR-288:66-88]

     a      aauuagcg   ca      --u       auaauuaa    g 
cgguc ugucgu        gag  cggcau   gccggcg        ugac g
||||| ||||||        |||  ||||||   |||||||        ||||  
gccgg acaGUA        CUU  GCUGUA   Ugguugc        acug u
     c      ---CUUUA   UA      CUU       --------    g 

>dsi-mir-92a (-38.00)   [dsi-miR-92a:55-76]

aa  ug   uu        a     -     u   c    -ug a 
  ua  aau  cccguagg cggga aggug caa guuu   c u
  ||  |||  |||||||| ||||| ||||| ||| ||||   | u
  au  uug  gggUAUCC GCCCU UUCAC GUU Caaa   g u
ua  gu   gc        G     G     -   A    uaa c 

>dsi-mir-287 (-19.50)   [dsi-miR-287:43-63]

ug  g     - -    --   -gc           a 
  ua ggucg g aaau  uuu   acacauuuaca u
  || ||||| | ||||  |||   ||||||||||| a
  gu ucagC C UUUG  AAA   UGUGUaaaugu a
-a  g     A G    CU   AGU           u 

>dsi-mir-6-3 (-30.13)   [dsi-miR-6:53-74]

    a             ug   a        uucgaaa 
caaa agaagggaacggu  cug ugauguag       c
|||| |||||||||||||  ||| ||||||||       u
guuu uUUUUUCUUGUCG  GAC ACUAUauu       c
    g             GU   -        uaacacu 

>dsi-mir-133 (-40.20)   [dsi-miR-133:55-76]

cu     -    ug             cauc  gu     -  guu 
  gcaac gcug  uguagcugguuga    gg  cagau cu   u
  ||||| ||||  |||||||||||||    ||  ||||| ||    
  cguug ugac  aUGUCGACCAACU    CC  GUUua ga   u
gu     g    cg             -UCC  UG     c  auu 

>dsi-mir-7 (-33.90)   [dsi-miR-7:15-37]

        u     U       U  U     U      uggu u 
gagugcau ccgua GGAAGAC AG GAUUU GUUGUu    c u
|||||||| ||||| ||||||| || ||||| ||||||    |  
uuuacgug ggcau ucuucug uc cuaaa uaacaa    g u
        c     -       u  c     -      uaau g 

>dsi-mir-284 (-41.70)   [dsi-miR-284:64-92]

--         c              a   uguagccugugagggcaag 
  guugcaguu cuggaauuaaguug cug                   g
  ||||||||| |||||||||||||| |||                   c
  cggcGUUAA GACCUUAGUUCAAC GAC                   u
cc         C              -   UGAAGUccucgucauaagu 

>dsi-mir-184 (-33.70)   [dsi-miR-184*:16-36] [dsi-miR-184:55-76]

cc    c  u  ua         -     U  -  CCG   gcau 
  ggug au cg  cCCUUAUCA UUCUC CG CC   ugu    u
  |||| || ||  ||||||||| ||||| || ||   |||     
  ccac ua gc  GGGAAUAGU AAGAG GC GG   aca    u
aa    -  u  uC         C     -  A  Uca   gaaa 

>dsi-mir-281 (-32.51)   [dsi-miR-281*:15-36] [dsi-miR-281:58-80]

      ag  a           -UG     C      ccagaaag 
cgaaua  ug auaAAGAGAGC   UCCGU GACAGU        c
||||||  || |||||||||||   ||||| ||||||        a
gcuuau  au UGUUUCUCUCG   AGGUA CUGUca        u
      -a  a           UUA     -      cuauaauu 

>dsi-mir-6-2 (-23.60)   [dsi-miR-6*:8-30] [dsi-miR-6:48-69]

     cc       UU UG   C       -uua  g 
uaacc  AGGGAAC  C  CUG UGAUAUA    uu a
|||||  |||||||  |  ||| |||||||    ||  
guugg  UUUCUUG  G  GAC ACUAUau    aa a
     UU       UC GU   -       ccuc  a 

>dsi-mir-318 (-24.90)   [dsi-miR-318:43-64]

u          c   c        uu   caca 
 uuaugggaua aca aguucagu  ugu    c
 |||||||||| ||| ||||||||  |||     
 aguACUCUAU UGU UCGGGUCA  acg    u
g          U   U        CU   aauu 

>dvi-mir-314 (-34.10)   [dvi-miR-314:71-91]

u  u       g        au     ugguu    -      u  aac 
 cg aacuugu uggcuuga  guacc     gagg aacgaa uc   g
 || ||||||| ||||||||  |||||     |||| |||||| ||    
 GC UUGAAUA ACCGAGCU  UAUgg     uucc uuguuu ag   u
G  -       -        --     ----u    g      u  guu 

>dvi-mir-2a-2 (-32.90)   [dvi-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g agc 

>dvi-mir-2a-1 (-35.10)   [dvi-miR-2a:50-72]

    c    -      -         a    auuugaaa  u 
gcug gcuc ucaaag ugguuguga augc        gc u
|||| |||| |||||| ||||||||| ||||        || u
cgau CGAG AGUUUC ACCGACACU Uacg        cg g
    u    U      G         A    --------  c 

>dvi-mir-2c (-31.40)   [dvi-miR-2c:61-83]

ca    uua    -       -      aag     a  -     a  ucu 
  uguc   cuuu caauguc aucaaa   ggcug ga augau ua   g
  ||||   |||| ||||||| ||||||   ||||| || ||||| ||    
  acgg   gaaa guuaCGG UAGUUU   CCGAC CU Ugcua gu   c
ca    ---    c       G      CGA     A  A     a  uaa 

>dvi-mir-12 (-29.40)   [dvi-miR-12:7-29]

      UG     U    C          -  gccau 
uacggu  AGUAU ACAU AGGUACUGGU gu     u
||||||  ||||| |||| |||||||||| ||      
gugccg  ucaua ugua uucaugacca ca     u
      ca     c    -          a  aucaa 

>dvi-mir-13a (-26.76)   [dvi-miR-13a:47-68]

u   u     u      -        a   uugccg 
 gcg aacuc ucaagg gguuguga aug      u
 ||| ||||| |||||| |||||||| |||      u
 ugc uUGAG AGUUUU CCGACACU Uac      a
g   u     U      A        A   ugaacu 

>dvi-mir-306 (-36.20)   [dvi-miR-306:8-29] [dvi-miR-306*:53-74]

cc  u  U       UU            ucaucuau     
  gc gc CAGGUAC  AGUGACUCUCAA        ugcu 
  || || |||||||  ||||||||||||        ||| u
  cg CG GUCCGUG  UCGCUGGGAGuu        acgu 
uc  c  U       UC            ----ccau     

>dvi-mir-279 (-35.47)   [dvi-miR-279:61-82]

gu         u          a     c  uguu     uucguuuu 
  acuacuguu uuagugagug ggguc ag    ucaca        u
  ||||||||| |||||||||| ||||| ||    |||||         
  ugauggcaa AAUUACUCAC CCUAG UC    AGUgu        u
cu         c          A     A  ----     uuaugaac 

>dvi-mir-11 (-25.80)   [dvi-miR-11:54-74]

  a  uau         uuu      -----c       aac 
gc cu   caagaacuu   cuguga      uugcgug   u
|| ||   |||||||||   ||||||      |||||||    
cg ga   GUUCUUGAG   GACACU      aacguau   c
  c  uuC         UCU      ACgcca       auu 

>dvi-mir-125 (-31.70)   [dvi-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dvi-mir-313 (-26.76)   [dvi-miR-313:47-68]

-             uc    u    u   uuuuuu 
 uuuucggcugugg  agug caau cuu      u
 |||||||||||||  |||| |||| |||      a
 aaAGGCCGGCACU  UCAC GUUA gaa      u
a             UU    -    U   cauuuu 

>dvi-mir-263a (-36.00)   [dvi-miR-263a:12-35]

--      g   a  UA   G     GA   AU       -  uuu 
  aucucg cac GU  AUG CACUG  AGA  UCACggg gu   u
  |||||| ||| ||  ||| |||||  |||  ||||||| ||   a
  uagggc gug ua  uac gugau  ucu  agugccc ca   u
ua      -   g  uc   g     uc   --       g  caa 

>dvi-mir-274 (-42.80)   [dvi-miR-274:17-42]

gu               --       C  A  CU         Uu g   accu 
  uuguugcaguuucgG  UUUGUGA CG CA  AACGGGUAG  g ggc    c
  |||||||||||||||  ||||||| || ||  |||||||||  | |||    g
  agcaacguuaaaguc  aaacacu gc gu  uugcucauu  u ucg    a
--               uu       a  -  uu         -u g   caua 

>dvi-mir-263b (-29.30)   [dvi-miR-263b:6-26]

uu   C        G G     U     ucg   a 
  cau UUGGCACU G AGAAU CACag   auu c
  ||| |||||||| | ||||| |||||   |||  
  gua aaccgugg c ucuug guguc   uaa a
au   a        g g     -     uua   u 

>dvi-mir-318 (-25.21)   [dvi-miR-318:44-65]

u          c  c         uuuguca     c 
 uuaugggaua ac aaguucagu       gaugu c
 |||||||||| || |||||||||       |||||  
 aauACUCUAU UG UUCGGGUCA       CUacg a
g          U  U         -------     a 

>dvi-mir-6-2 (-28.10)   [dvi-miR-6:54-75]

      c       u  ug   c      acu  aua     
uaaccg agggaac gc  cug ugauau   gu   gauu 
|||||| ||||||| ||  ||| ||||||   ||   ||| a
guuggU UUUCUUG CG  GAC ACUAUa   ua   cuau 
      U       U  GU   -      ccu  --g     

>dvi-mir-9c (-27.80)   [dvi-miR-9c:13-34]

    uu    uuU         UCU    G     u uuuu   a 
auuu  gcug   CUUUGGUAU   AGCU UAGAu g    uac g
||||  ||||   |||||||||   |||| ||||| |    ||| u
uaaa  cgac   gaaaccaua   ucga aucua c    aug u
    uu    cuc         uuu    a     - ---u   u 

>dvi-mir-9b (-33.20)   [dvi-miR-9b:15-37]

u   --u        cUC         UUU    G     u   c 
 gca   auuauuug   UUUGGUGAU   AGCU UAUGg gug g
 |||   ||||||||   |||||||||   |||| ||||| |||  
 cgu   ugguaaac   aaaccauua   ucga auacc uau c
a   uuu        caa         -uu    g     u   g 

>dvi-mir-281-2 (-32.90)   [dvi-miR-281-2*:15-36] [dvi-miR-281:59-81]

      gcg a ug        -UA     C      ----   g  a 
cgaaua   a a  AAGAGAGC   UCCGU GACAGU    caa cu u
||||||   | |  ||||||||   ||||| ||||||    ||| ||  
gcuuau   u U  UUCUCUCG   AGGUA CUGUca    guu ga a
      -aa a GU        UUA     -      uaau   a  c 

>dvi-mir-210 (-36.52)   [dvi-miR-210:50-70]

--   -a     ugc        gc   -         uuaga 
  ggu  cuuau   agcugcug  cac ugcacaaga     c
  |||  |||||   ||||||||  ||| |||||||||     u
  cca  gaaug   UCGGCGAC  GUG GCGUGUUcu     c
ga   ga     uuA        -A   U         cagaa 

>dvi-mir-9a (-25.80)   [dvi-miR-9a:9-31]

cu      U       UAU      G     -  gau 
  auguug CUUUGGU   CUAGCU UAUGA gu   a
  |||||| |||||||   |||||| ||||| ||    
  uauaau gaagcca   gaucga auacu ca   a
au      u       uuc      a     g  aua 

>dvi-mir-287 (-20.30)   [dvi-miR-287:46-66]

--     u    uuugaa     gc           a 
  gugca aaug      auuuu  acacauuuaca u
  ||||| ||||      |||||  ||||||||||| a
  CACGU UUGC      UAAAA  UGUGUaaaugu a
aa     -    ------     GU           u 

>dvi-mir-7 (-28.00)   [dvi-miR-7:14-36]

     uuu     U       U  U     --       u   c 
aaugc   ccgua GGAAGAC AG GAUUU  UGUUGUu ggu u
|||||   ||||| ||||||| || |||||  ||||||| |||  
uuacg   gguau ucuucug uc cuaaa  acaauaa ucg c
     cgc     -       u  c     ua       -   u 

>dvi-mir-282 (-41.00)   [dvi-miR-282:13-40]

aa uu    -auaA           AC      U      Ugcau   a 
  u  ccuu     AUCUAGCCUCU  UAGGCU UGUCUG     ucg u
  |  ||||     |||||||||||  |||||| ||||||     ||| a
  a  ggaa     uggauuggaga  auccga acagac     ggc u
-- gg    ccaug           gu      u      ----u   a 

>dvi-mir-315b (-5.20)   [dvi-miR-315b:6-27]

uu     UUG   G   U     -----   C 
  caaUU   AUU UUG ACAGA     AAC u
  |||||   ||| ||| |||||     |||  
  guuaa   uaa agc uguuu     uug a
au     ---   g   u     aauua   a 

>dvi-mir-310 (-24.50)   [dvi-miR-310:49-70]

au     u       u cuc     g      u  uua 
  cauuu uaggccg g   ugugu aauaug uu   a
  ||||| ||||||| |   ||||| |||||| ||    
  gugaa AUCCGGC C   ACACG UUAUac aa   c
-u     U       C UCU     -      u  uau 

>dvi-mir-283 (-29.60)   [dvi-miR-283:15-35]

cc     uc      AA           U         a --ca   cc 
  gauuc  aaaggU  AUAUCAGCUGG AAUUCUggg g    aug  u
  |||||  ||||||  ||||||||||| ||||||||| |    |||   
  uuaag  uuuuca  uaugguugacu uuaaggcuc c    uau  a
--     uu      gc           -         a aaag   aa 

>dvi-mir-133 (-33.60)   [dvi-miR-133:53-74]

--    -     gug           cauc  gu     -  auu 
  caac gcugu   uaguugguuga    gg  cagau cu   u
  |||| |||||   |||||||||||    ||  ||||| ||   c
  guug ugacg   GUCGACCAACU    CC  GUUua ga   u
aa    g     -aU           -UCC  UG     c  aag 

>dvi-mir-278 (-35.70)   [dvi-miR-278:58-79]

uu     acgg     c       u     a  a     -  gcau 
  auggu    ugcga cggauga gguuc ca cgacc gu    a
  |||||    ||||| ||||||| ||||| || ||||| ||    c
  uaccg    augUU GCCUGCU UCAGG GU GCUgg ca    u
uu     --ca     U       U     -  G     u  auuu 

>dvi-mir-13b-1 (-23.40)   [dvi-miR-13b:43-64]

   -ug           c      ccu    uauu 
cca   ucguuaaaaug cuguga   uaug    u
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    u
   uUG           C      ---    uaua 

>dvi-mir-124 (-34.60)   [dvi-miR-124:57-79]

uc  uu   -a     uu   c      c      ag    c    aau 
  gu  ggu  cguuu  cuc ugguau cacugu  gccu uaug   u
  ||  |||  |||||  ||| |||||| ||||||  |||| ||||   u
  ca  uca  gcaag  gaG ACCGUA GUGGCG  CGGA AUac   u
aa  uc   aa     -c   A      A      CA    -    cag 

>dvi-mir-305 (-24.50)   [dvi-miR-305:8-30]

     cu U         U  G     CU  u  gac 
caugu  A UGUACUUCA CA GUGCU  Gg gu   u
|||||  | ||||||||| || |||||  || ||    
guaua  u acaugaagu gu cacgg  cc ca   u
     ac c         u  a     --  -  aug 

>dvi-mir-33 (-42.70)   [dvi-miR-33:15-35]

ug       u      -G           C C    u    -cu  a 
  gagcugu acggAG  UGCAUUGUAGU G AUUG cugu   ca a
  ||||||| ||||||  ||||||||||| | |||| ||||   ||  
  cuugacg ugccuc  acgugacguca c uaac ggcg   gu u
ca       -      ga           a a    -    ccc  u 

>dvi-mir-276b (-39.90)   [dvi-miR-276b:61-82]

ac   -     auaua   uc    a     a           -----   a 
  cga agucu     cca  agcg gguau gaguuccuacg     ugc a
  ||| |||||     |||  |||| ||||| |||||||||||     ||| a
  gcu ucggg     ggu  UCGU CCAUA UUCAAGGAUgc     acg u
ca   g     ----a   UC    G     A           uaaua   u 

>dvi-mir-276a (-38.46)   [dvi-miR-276a:56-77]

cc      uug   uc    a     ag          uucaau 
  ugguuu   cca  agcg gguau  aguuccuacg      u
  ||||||   |||  |||| |||||  ||||||||||      u
  accaga   ggu  UCGU CCAUA  UCAAGGAUgc      a
aa      --a   UC    G     CU          ucauau 

>dvi-mir-315a (-29.40)   [dvi-miR-315a:12-33]

   c   auca               A       cu cau 
cgc uau    UUUUGAUUGUUGCUC GAAAGCc  g   u
||| |||    ||||||||||||||| |||||||  |   c
gcg aua    aaagcuaauaaugag cuuucgg  c   a
   a   aacc               -       uu aua 

>dvi-mir-6-3 (-24.90)   [dvi-miR-6:49-70]

aa           uu      u       --ucg  c 
  ggaagagaacg  cgcugu gauguag     ac u
  |||||||||||  |||||| |||||||     ||  
  uUUUUUCUUGU  GUGACA CUAUauu     ug u
ug           CG      -       ucuca  u 

>dvi-mir-316 (-29.10)   [dvi-miR-316:16-37]

      -    c   u           G   -A   G    uua 
aaguuc uagu gau UGUCUUUUUCC CUU  CUG CGuu   u
|||||| |||| ||| ||||||||||| |||  ||| ||||   u
uuuaag auca uua gcggaaaaagg gaa  gac gcaa   g
      u    u   u           -   ag   a    cga 

>dvi-mir-277 (-37.72)   [dvi-miR-277:56-78]

ca       gc  -   gu    -            --  gaaac 
  guuuugg  ug cgu  cagg agugcauuugca  cu     a
  |||||||  || |||  |||| ||||||||||||  ||     u
  caagacc  AC GCA  GUCU UCACGUAAAUgu  ga     u
ug       uu  A   UG    A            uc  aaguc 

>dvi-mir-281-1 (-33.00)   [dvi-miR-281-1*:15-36] [dvi-miR-281:56-78]

      aguga           -UG     C      cca  a  a 
cgaaua     auaAAGAGAGC   UCCGU GACAGU   gu ac a
||||||     |||||||||||   ||||| ||||||   || ||  
gcuuau     UGUUUCUCUCG   AGGUA CUGUca   ua ug a
      -agua           UUA     -      ---  a  u 

>dvi-mir-317 (-37.80)   [dvi-miR-317:53-76]

ug    u         aua    --     c     uugaau   g 
  caau gccgcuggg   cacc  cugug ucgcu      ugu c
  |||| |||||||||   ||||  ||||| |||||      |||  
  guug cggUGACCU   GUGG  GACAC AGUga      acg a
cg    c         AUG    UC     A     ------   a 

>dvi-mir-184 (-37.70)   [dvi-miR-184*:20-40] [dvi-miR-184:59-80]

-     -c    c  u  ua         -     GCGCCCCGugugcau 
 uuggc  ggug au cg  cCCUUAUCA UUCUC               a
 |||||  |||| || ||  ||||||||| |||||                
 aacug  ccac ua gc  GGGAAUAGU AAGAG               u
c     aa    -  u  uC         C     GCAGGUcaacagauc 

>dvi-mir-286 (-28.70)   [dvi-miR-286:67-89]

--         aaug    u   -    a          uucaaaca     cca 
  uuaaaauua    gcga ugu cggu uggucgcuuu        auaua   u
  |||||||||    |||| ||| |||| ||||||||||        |||||    
  aauuuuaau    UGCU ACA GCCA AUCAGUgaaa        uauau   u
aa         aUCG    C   A    G          --------     cua 

>dvi-mir-2b (-37.30)   [dvi-miR-2b:54-76]

       a          -         a   --uuu  cuu 
uuguguc uucuucaaag ugguuguga aug     gc   u
||||||| |||||||||| ||||||||| |||     ||    
agcacag GAGGAGUUUC ACCGACACU Uac     cg   u
       C          G         A   ucauc  uau 

>dvi-mir-288 (-25.31)   [dvi-miR-288:66-88]

ca    c     -------   ua  -  -u  a      u  ug c a  a 
  gccg gucgu       aau  gc ug  gc caacgu gc  g g ua u
  |||| |||||       |||  || ||  || |||||| ||  | | || u
  cggc caGUA       UUA  UG AC  Ug guugca ug  u c gu a
gc    a     CUUUACU   GC  U  UU  -      c  gu u a  a 

>dvi-mir-307 (-36.61)   [dvi-miR-307:56-75]

         -   a         ccu  g       uuaguuc   u 
ugucuugcu uug cucacucaa   gg ugugaug       gau u
||||||||| ||| |||||||||   || |||||||       ||| g
auaggacga agc GAGUGAGUU   CC ACACUac       cua g
         u   -         CCU  A       -------   u 

>dvi-mir-13b-2 (-27.00)   [dvi-miR-13b:49-70]

uu   g          a      gc    uu  u  a 
  ggc cgucaaaaug cuguga  uaug  gu gc u
  ||| |||||||||| ||||||  ||||  || ||  
  uUG GCAGUUUUAC GACACU  AUac  ua cg u
gu   A          C      --    -u  c  u 

>dvi-mir-8 (-31.93)   [dvi-miR-8:57-79]

        cu uu -       -   g     c      uucuuga 
aaggacau  g  c acaucuu acc ggcag auuaga       u
||||||||  |  | ||||||| ||| ||||| ||||||       u
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu       u
        -- cu C       A   A     A      uaauaaa 

>dvi-mir-34 (-36.20)   [dvi-miR-34:14-35]

ug   a  -   uu        U  U   C        --ug c a 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug    g c a
  ||| || |||  |||||||| || ||| ||||||||    | |  
  cga ac gcg  gccgucac uc auc accgacac    c g u
--   -  a   cc        u  u   -        uaaa a u 

>dvi-mir-4 (-25.50)   [dvi-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag      u 
u  caau a  uuc  uggu guc agc     gugauu c
|  |||| |  |||  |||| ||| |||     |||||| u
g  guug u  aAG  ACCA CAG UCG     UAcuag c
 gu    c ug   UU    A   A   --AAA      u 

>dvi-mir-3 (-25.10)   [dvi-miR-3:42-63]

--               g    u   uc gcc 
  ugggaugcauuuugu cggu aug  u   u
  ||||||||||||||| |||| |||  |   c
  ACUCUGUGUGAAACG GUCA Uac  a   c
aa               G    C   cc aaa 

>dvi-mir-309 (-28.80)   [dvi-miR-309:49-70]

        gu      ug      uu   cag  u u 
auuauaug  aaacuu  uucagu  ugc   gc c u
||||||||  ||||||  ||||||  |||   || | u
uaauAUGC  UUUGAA  GGGUCA  acg   cg g u
        UG      GU      CU   ---  u u 

>dvi-mir-1 (-35.70)   [dvi-miR-1:53-74]

--   uuu  --ga            c        aaua    u aa 
  gcc   ga    guuccaugcuuc uuacauuc    guau c  a
  |||   ||    |||||||||||| ||||||||    |||| |   
  cgg   cu    cGAGGUAUGAAG AAUGUAAG    Uaua g  u
ag   --u  aaag            A        ---G    c aa 

>dvi-mir-10 (-29.60)   [dvi-miR-10:9-29]

     ucc   -  G    U           g acacu 
ccacg   ACC CU UAGA CCGAAUUUGUu u     a
|||||   ||| || |||| ||||||||||| |      
ggugu   ugg ga aucu ggcuuaaacag a     g
     cuu   a  g    u           g auuuu 

>dvi-mir-5 (-22.19)   [dvi-miR-5:4-26]

--   -       C               cguucau 
  cua AAAGGAA GAUCGUUGUGAUAUG       u
  ||| ||||||| |||||||||||||||        
  gau uuuccuu uuagugacacuauac       a
gc   a       -               auugcca 

>dvi-mir-92b (-33.80)   [dvi-miR-92b:57-78]

aa  u   - uga         u c       uu     -----   u 
  cg cac c   uguaggucg g cuggugc  auuug     uug u
  || ||| |   ||||||||| | |||||||  |||||     ||| a
  gc gug g   aCGUCCGGC C GAUCACG  UAAac     agc u
ac  u   a -ug         C U       -U     cuaaa   g 

>dvi-mir-iab-4 (-26.50)   [dvi-miR-iab-4-5p:7-28] [dvi-miR-iab-4-3p:41-64]

    -a             U    C   Ag  u 
ucgu  uACGUAUACUGAA GUAU CUG  ug a
||||  ||||||||||||| |||| |||  || u
agca  AUGCAUAUGACUU CAUA GGC  au c
    CA             C    U   cu  c 

>dvi-mir-280 (-23.90)   [dvi-miR-280:10-36]

--    uuuu     UU   G                --A      
  uggc    aUGUA  UAC UUGCAUAUGAAAUGAU   uuuau 
  ||||    |||||  ||| ||||||||||||||||   |||| a
  accg    uacau  aug gacguauauuuuauua   aaaug 
ag    ----     --   -                gac      

>dvi-bantam (-26.80)   [dvi-bantam:52-74]

au     uac    c          uu      g   -      
  uugac   gaaa cgguuuucga  ugguuu acu guauu 
  |||||   |||| ||||||||||  |||||| ||| |||| u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga cauac 
--     ---    A          UU      G   a      

>dvi-mir-31a (-34.70)   [dvi-miR-31a:14-36]

       uuc       A     U         ----------  A    u 
ucuguug   aauUGGC AGAUG CGGCAUAGC          UG cguu g
|||||||   ||||||| ||||| |||||||||          || ||||  
agguaac   uugacug ucuac gucguaucg          ac gcga a
       uua       a     -         cgauauuuuu  -    a 

>dvi-mir-308 (-23.30)   [dvi-miR-308:41-62]

           c       u    -   au 
cucgcaguaua uuuugug uuug uuu  u
||||||||||| ||||||| |||| |||  u
GAGUGUCAUAU AGGACAC AAac aaa  u
           U       U    u   ag 

>dvi-mir-285 (-28.09)   [dvi-miR-285:66-87]

--  a   -u    a     ga    u      a    uaucgcccaaaaa 
  uc aau  gaag acuga  ucga uggugc uaga             g
  || |||  |||| |||||  |||| |||||| ||||              
  ag uua  uuuC UGACU  AGCU ACCACG AUcu             u
ca  c   uu    G     AA    U      -    uaacuuuacuuaa 

>dvi-mir-6-1 (-26.31)   [dvi-miR-6:46-67]

ag            a       -------       u 
  uagagagaauag cgcugug       cuguaug u
  |||||||||||| |||||||       ||||||| u
  gUUUUUCUUGUC GUGACAC       gguaugc u
au            G       UAUaucu       g 

>dvi-mir-275 (-44.20)   [dvi-miR-275:56-78]

--    -u               -a    ug   gg     guuu   u 
  gucu  uuaccgugcgcgcua  ucag  acc  ggcug    ugg u
  ||||  |||||||||||||||  ||||  |||  |||||    ||| a
  caga  ggugguGCGCGCGAU  AGUC  UGG  CUgac    acc u
ug    cc               GA    CA   -A     ----   c 

>dvi-mir-14 (-28.50)   [dvi-miR-14:41-61]

        c    cg      c      cu 
ugugggag gaga  gggacu acugug  u
|||||||| ||||  |||||| ||||||  u
auAUCCUC CUCU  UUCUGA Ugauau  u
        U    UU      C      au 

>dvi-mir-31b (-33.70)   [dvi-miR-31b:14-35]

     -    aau     A     UC  A       agagcacaaagucauaaauccagaauu 
caaau aaug   uUGGC AGAUG  GG AUAGCUG                           u
||||| ||||   ||||| |||||  || |||||||                            
guuua uuac   aacug ucuac  cc uaucggc                           c
     c    guu     a     -u  g       gacaugaguuauuuuuauguguuuuau 

>dvi-mir-100 (-27.10)   [dvi-miR-100:12-33]

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   a
ac    c     ga       ac   ca      u u uau 

>dvi-mir-87 (-30.34)   [dvi-miR-87:60-80]

-  u     auu        -u  c     g     uuacaauu  g 
 ca auuuc   cgcgccug  au uugcu aaccg        ga a
 || |||||   ||||||||  || ||||| |||||        ||  
 gu uaaag   GUGUGGAC  UA AACGA UUggc        cu c
u  u     agu        UU  A     G     --cuaaau  a 

>dvi-mir-79 (-41.64)   [dvi-miR-79:57-78]

ac      cu    u        cgc       g     uagauu 
  gccgca  gccg ugcuuugg   uuuagcu uauga      u
  ||||||  |||| ||||||||   ||||||| |||||       
  cggugu  cggu ACGAAACC   AGAUCGA AUacu      g
ac      cu    U        AUU       A     ucauaa 

>dvi-mir-304 (-29.00)   [dvi-miR-304:12-34]

    ca    u       AAU       U     c auu    a 
gcag  uuga UAAUCUC   UUGUAAA GUGAG g   uuaa g
||||  |||| |||||||   ||||||| ||||| |   |||| u
cguu  agcu guuagag   aacguuu cacuc c   aguu a
    ag    c       guu       -     a -gc    u 

>dvi-mir-284 (-41.50)   [dvi-miR-284:64-92]

--         c            ---     g    -  -c    a   g 
  guugcaguu cuggaauuaagu   ugacu ugua gc  ugua agg a
  ||||||||| ||||||||||||   ||||| |||| ||  |||| ||| a
  cggcGUUAA GACCUUAGUUCA   ACUGA ACau cg  acgu uuc g
cc         C            ACG     A    u  uc    g   g 

>dvi-mir-219 (-34.50)   [dvi-miR-219:19-41]

ua    -g     u   ua    U     AA           -----   a 
  auuc  auuuu agc  UGAU GUCCA  CGCAAUUCUUG     uug u
  ||||  ||||| |||  |||| |||||  |||||||||||     |||  
  uaag  uaaag ucg  gcua cgggu  gcguugggaac     aac u
cc    ag     c   gc    -     ca           ucaua   u 

>dvi-mir-92a (-31.60)   [dvi-miR-92a:50-71]

--        gc   a     -     u   c    --ug u 
  aacugcuu  agg cggga aggug caa guuu    c u
  ||||||||  ||| ||||| ||||| ||| ||||    | u
  uuggcgag  UCC GCCCU UUCAC GUU Caaa    g a
gu        UA   G     G     -   A    cuaa u 

>dvi-let-7 (-32.70)   [dvi-let-7:11-31]

  u      uU   G     G           gua  u 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa   uu a
|| ||||||  ||| ||||| |||||||||||   ||  
ag ucguuu  uuc aucgu cgacauaucau   ag u
  u      cu   g     g           acg  a 

>dwi-mir-79-2 (-35.50)   [dwi-miR-79:49-70]

uu             cgc       g     --   au 
  gccuaugcuuugg   uuuagcu uauga  uag  u
  |||||||||||||   ||||||| |||||  |||   
  cgggUACGAAACC   AGAUCGA AUacu  auc  u
cu             AUU       A     uc   ag 

>dwi-mir-87-2 (-30.20)   [dwi-miR-87:61-81]

-  u     auu        -u  c     g     uu ccaauu   a 
 ca auuuc   cgcgccug  au uugcu aaccg  a      gug u
 || |||||   ||||||||  || ||||| |||||  |      ||| c
 gu uaaag   GUGUGGAC  UA AACGA UUggc  u      uac u
u  u     agu        UU  A     G     cu ------   u 

>dwi-mir-34 (-34.65)   [dwi-miR-34:14-35]

ug   a  -   uu        U  U   C        uagccaauuaaau 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug             u
  ||| || |||  |||||||| || ||| ||||||||             g
  cgg ac gcg  gccgucac uc auc accgacac             c
--   -  a   cc        u  u   -        caaauaacaaaac 

>dwi-mir-285 (-28.16)   [dwi-miR-285:61-82]

----     ga    u      a    uaauaugc   u  uau 
    acuga  ucga uggugc uaga        gaa uc   c
    |||||  |||| |||||| ||||        ||| ||    
    UGACU  AGCU ACCACG AUcu        cuu ag   a
uuCG     AA    U      -    -uaacuua   u  uuu 

>dwi-bantam (-25.50)   [dwi-bantam:52-74]

au     uac    c          uu      g   -  uu 
  uugac   gaaa cgguuuucga  ugguuu acu gu  u
  |||||   |||| ||||||||||  |||||| ||| ||  u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga ca  c
--     ---    A          UU      G   a  ua 

>dwi-mir-306-1 (-22.90)   [dwi-miR-306:3-24]

--g  C      UU    A       ----   a 
   cU AGGUAC  AGUG CUCUCAA    aga u
   || ||||||  |||| |||||||    ||| a
   ga uccaug  ucgc gagaguu    ucu u
uca  -      uc    a       caga   a 

>dwi-mir-1 (-29.80)   [dwi-miR-1:55-76]

g  ucuu  --ga            c        a   -  a     
 cc    ga    guuccaugcuuc uugcauuc aua gu uauu 
 ||    ||    |||||||||||| |||||||| ||| || ||| a
 gg    cu    cGAGGUAUGAAG AAUGUAAG Uau cg auaa 
-  ---u  aaag            A        G   a  a     

>dwi-mir-184 (-35.00)   [dwi-miR-184*:16-36] [dwi-miR-184:55-76]

cc    c  u  ua         -     GCGCCCCGugugcau 
  ggug au cg  cCCUUAUCA UUCUC               a
  |||| || ||  ||||||||| |||||                
  ccac ua gc  GGGAAUAGU AAGAG               u
aa    -  u  uC         C     GCAGGUcaacagauc 

>dwi-mir-13b-1 (-21.30)   [dwi-miR-13b:46-67]

   -ug           u      cuu    uu   u 
cca   ucguuaaaaug uuguga   uaug  gug c
|||   ||||||||||| ||||||   ||||  |||  
ggu   AGCAGUUUUAC GACACU   AUac  uau u
   uUG           C      ---    -u   c 

>dwi-mir-92b (-30.64)   [dwi-miR-92b:57-78]

ua  u   a  a     a   u c       uu      ugcuau 
  cg cac ug uguag ccg g cuggugc  auuugu      u
  || ||| || ||||| ||| | |||||||  ||||||       
  gc gug au aCGUC GGC C GAUCACG  UAAaca      u
ac  u   a  g     C   C U       -U      uauaaa 

>dwi-mir-9c-1 (-28.00)   [dwi-miR-9c:12-33]

-   uu    uuU         UCU    G     u  uuuu   a 
 uuu  gcug   CUUUGGUAU   AGCU UAGAu gu    ugc c
 |||  ||||   |||||||||   |||| ||||| ||    ||| a
 aaa  cgac   gaaaccaua   ucga aucua ua    aug u
u   uu    cuc         uuu    a     c  ---u   u 

>dwi-mir-284 (-40.90)   [dwi-miR-284:65-93]

--         c              a   ----u   -  -c    ag  ga 
  guugcaguu cuggaauuaaguug cug     gua gc  uguu  gg  a
  ||||||||| |||||||||||||| |||     ||| ||  ||||  ||   
  cggcGUUAA GACCUUAGUUCAAC GAC     Cau cg  acga  uc  a
cc         C              -   UGAAU   a  uu    gu  gg 

>dwi-mir-281-2 (-34.50)   [dwi-miR-281-2*:15-36] [dwi-miR-281:65-87]

      gcg a ug        -UA     C      ---c      aau 
cgaaua   a a  AAGAGAGC   UCCGU GACAGU    caguuu   a
||||||   | |  ||||||||   ||||| ||||||    ||||||   c
gcuuau   u U  UUCUCUCG   AGGUA CUGUca    guuaag   a
      -aa a GU        UUA     -      uaau      ccu 

>dwi-let-7 (-30.36)   [dwi-let-7:11-31]

  u      uU   G     G           guaauu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa      a
|| ||||||  ||| ||||| |||||||||||      u
ag ucguuu  uuc aucgu uaacauaucau      u
  u      cu   g     g           acuaac 

>dwi-mir-305 (-24.30)   [dwi-miR-305:8-30]

     cu U         U  G     CU   gucc 
caugu  A UGUACUUCA CA GUGCU  Ggu    g
|||||  | ||||||||| || |||||  |||    u
guaua  u acaugaagu gu cacgg  cca    u
     ac c         u  a     -c   augu 

>dwi-mir-92a (-29.72)   [dwi-miR-92a:50-71]

--   uu        a     -     u   c    ugccu 
  aau  cucguagg cggga aggug caa guuu     u
  |||  |||||||| ||||| ||||| ||| ||||     a
  uug  gagUAUCC GCCCU UUCAC GUU Caaa     u
gu   gc        G     G     -   A    cuaag 

>dwi-mir-286 (-25.80)   [dwi-miR-286:76-98]

--       aaug    u   -    a     u      ----------c       cu 
  aaaauug    gcga ugu cggu uaguc cuuuuu           caaaaau  u
  |||||||    |||| ||| |||| ||||| ||||||           |||||||  g
  uuuuaau    UGCU ACA GCCA AUCAG gaaaga           guuuuug  u
aa       aUCG    C   A    G     U      auaaucuaacc       uu 

>dwi-mir-316 (-29.70)   [dwi-miR-316:16-37]

      -    c   u           G   -A   G    uuau 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uua gcggaaaaagg gaa  gac gcaa    u
      u    u   u           -   ag   a    ucaa 

>dwi-mir-279 (-36.00)   [dwi-miR-279:58-79]

-u         u          a     c  uguu     uua       
  acuacuguu uuagugagug ggguc ag    ucaca   aauauu 
  ||||||||| |||||||||| ||||| ||    |||||   ||||| u
  ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   uuauga 
cu         u          A     A  ----     ---       

>dwi-mir-263b (-27.70)   [dwi-miR-263b:3-23]

--auC        G G     U     ----    uu 
     UUGGCACU G AGAAU CACag    uuga  c
     |||||||| | ||||| |||||    ||||  u
     aaccgugg c ucuug guguc    agcu  u
ucuaa        g g     -     uuau    ua 

>dwi-mir-287 (-17.20)   [dwi-miR-287:49-69]

ua   c      guc   aa     c           a 
  uug uguaaa   uga  uuuug acacauuuaca u
  ||| ||||||   |||  ||||| ||||||||||| u
  aaC ACGUUU   GCU  AAAGU UGUGUaaaugu a
ca   -      ---   -A     -           u 

>dwi-mir-iab-4 (-26.80)   [dwi-miR-iab-4-5p:7-28] [dwi-miR-iab-4-3p:41-64]

    -a             U    -  --UG   g 
ucgu  uACGUAUACUGAA GUAU CC    Agu u
||||  ||||||||||||| |||| ||    |||  
agca  AUGCAUAUGACUU CAUA GG    ucg a
    CA             C    U  Ccua   u 

>dwi-mir-2a-2 (-32.90)   [dwi-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g aac 

>dwi-mir-276a (-38.46)   [dwi-miR-276a*:16-38] [dwi-miR-276a:56-77]

cc      uug   uC    A     AG          uucauu 
  ugguuu   cca  AGCG GGUAU  AGUUCCUACG      u
  ||||||   |||  |||| |||||  ||||||||||      a
  accaga   ggu  UCGU CCAUA  UCAAGGAUgc      a
aa      --a   UC    G     CU          ucaaau 

>dwi-mir-7 (-29.23)   [dwi-miR-7:15-37]

        u     U       U  U     U      uggucuu 
gaaugcau ccgua GGAAGAC AG GAUUU GUUGUu       u
|||||||| ||||| ||||||| || ||||| ||||||       a
uuuaugug gguau ucuucug uc cuaaa uaacaa       a
        c     -       u  c     -      uuaaaau 

>dwi-mir-306-2 (-21.86)   [dwi-miR-306:3-24]

--g  C      UU    A       agaaua 
   cU AGGUAC  AGUG CUCUCAA      u
   || ||||||  |||| |||||||      a
   ga uccaug  ucgc gagaguu      u
uca  -      uc    a       cagaua 

>dwi-mir-2a-1 (-36.93)   [dwi-miR-2a:50-72]

  u       -     -         a    auuauuu 
gc gagcuca caaag ugguuguga augc       g
|| ||||||| ||||| ||||||||| ||||       c
cg cuCGAGU GUUUC ACCGACACU Uacg       u
  u       A     G         A    accuauu 

>dwi-mir-11 (-23.10)   [dwi-miR-11:56-76]

-u    u     u   ucu      cc    u aga     c 
  cuug caaga cuc   cuguga  ugcg g   uuuau a
  |||| ||||| |||   ||||||  |||| |   ||||| u
  gagu GUUCU GAG   GACACU  ACgc c   aagua a
gc    C     U   UCU      --    - -aa     u 

>dwi-mir-304 (-26.90)   [dwi-miR-304:12-34]

    ca    u       AAU       U     c auuuaa   c 
guaa  uuga UAAUCUC   UUGUAAA GUGAG g      auc a
||||  |||| |||||||   ||||||| ||||| |      ||| u
cguu  agcu guuagag   aacguuu cacuc c      uag u
    ag    c       guu       -     a -----g   c 

>dwi-mir-219 (-31.10)   [dwi-miR-219:19-41]

ua    -g     u   ua    U     AAC          -----   a 
  auuc  auuuu agc  UGAU GUCCA   GCAAUUCUUG     uug u
  ||||  ||||| |||  |||| |||||   ||||||||||     |||  
  uaag  uaaag ucg  gcua cgggu   cguugggaac     aac u
ca    aa     c   gc    -     cua          ucaua   u 

>dwi-mir-79-1 (-35.50)   [dwi-miR-79:49-70]

uu             cgc       g     --   au 
  gccuaugcuuugg   uuuagcu uauga  uag  u
  |||||||||||||   ||||||| |||||  |||   
  cgggUACGAAACC   AGAUCGA AUacu  auc  u
cu             AUU       A     uc   ag 

>dwi-mir-8 (-32.00)   [dwi-miR-8:58-80]

        cu uu -       -   g     c      ---u       
aaggacau  g  c acaucuu acc ggcag auuaga    uuugua 
||||||||  |  | ||||||| ||| ||||| ||||||    ||||| c
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu    agauau 
        -- cu C       A   A     A      cuau       

>dwi-mir-283 (-29.16)   [dwi-miR-283:15-35]

cg     uc      AA           U         agcuaugccua 
  aauuc  aaaggU  AUAUCAGCUGG AAUUCUggg           g
  |||||  ||||||  ||||||||||| |||||||||            
  uuaag  uuuuca  uaugguugacu uuaaggcuc           a
--     uu      gc           -         acaaaguuuau 

>dwi-mir-318-2 (-25.60)   [dwi-miR-318:45-66]

u          c  c         uu  -   ca 
 uuaugggaua ac aaguucagu  ug ucg  u
 |||||||||| || |||||||||  || |||  u
 aauACUCUAU UG UUCGGGUCA  ac agc  c
-          U  U         CU  g   ac 

>dwi-mir-2b (-37.30)   [dwi-miR-2b:54-76]

u      a          -         a   --uuu  cuu 
 uguguc uucuucaaag ugguuguga aug     gc   u
 |||||| |||||||||| ||||||||| |||     ||    
 acgcag GAGGAGUUUC ACCGACACU Uac     cg   u
a      C          G         A   uuauc  uau 

>dwi-mir-12 (-29.40)   [dwi-miR-12:7-29]

      UG     U    C          -  gccuu 
uacggu  AGUAU ACAU AGGUACUGGU gu     u
||||||  ||||| |||| |||||||||| ||      
gugccg  ucaua ugua uucaugacca ca     a
      ca     c    -          a  accua 

>dwi-mir-276b (-43.30)   [dwi-miR-276b*:20-42] [dwi-miR-276b:61-82]

aa   -     auuua   uA    A     A           -----   a 
  cga agccu     cca  AGCG GGUAU GAGUUCCUACG     ugc a
  ||| |||||     |||  |||| ||||| |||||||||||     ||| a
  gcu ucggg     ggu  UCGU CCAUA UUCAAGGAUgc     acg u
aa   g     ----a   UC    G     A           uaaua   u 

>dwi-mir-210 (-37.12)   [dwi-miR-210:52-72]

ac   -a     ugc        gc   -         uuaga 
  ggu  cuuau   agcugcug  cac ugcacaaga     c
  |||  |||||   ||||||||  ||| |||||||||     u
  ccg  gaaug   UCGGCGAC  GUG GCGUGUUcu     u
ga   ga     uuA        -A   U         cagaa 

>dwi-mir-309 (-18.10)   [dwi-miR-309:5-26]

      A  C      CACC    GA   ---         u 
auuaUA GA AAACUU    CAGU  ugc   uaaggaauu u
|||||| || ||||||    ||||  |||   ||||||||| c
uaauau cu uuugaa    guca  acg   guuuuuuag u
      a  a      acaa    aa   uua         u 

>dwi-mir-6-3 (-28.70)   [dwi-miR-6:52-73]

aa             ug    u      ---g  u  ca 
  agaagggaacggu  cugu gaugua    ua ac  u
  |||||||||||||  |||| ||||||    || ||   
  uUUUUUCUUGUCG  GACA CUAUau    au ug  u
ug             GU    -      aaca  u  uu 

>dwi-mir-274 (-38.60)   [dwi-miR-274:13-38]

gu          --U       C  A  CU         --Uaa    uu   aa 
  ugcaguuuca   UUUGUGA CG CA  AACGGGUAG     cggg  aac  a
  ||||||||||   ||||||| || ||  |||||||||     ||||  |||   
  acguuaaagu   aaacacu gc gu  uugcucauu     gucu  uug  g
--          cuu       a  -  uu         uuccg    uu   cu 

>dwi-mir-317 (-36.00)   [dwi-miR-317:54-77]

gc   u         aua    --     c     uugaauau   g 
  aac gccacuggg   cacc  cugug ucgcu        ugu c
  ||| |||||||||   ||||  ||||| |||||        |||  
  uug cggUGACCU   GUGG  GACAC AGUga        aca a
-u   c         AUG    UC     A     --------   a 

>dwi-mir-9c-2 (-28.00)   [dwi-miR-9c:12-33]

-   uu    uuU         UCU    G     u  uuuu   a 
 uuu  gcug   CUUUGGUAU   AGCU UAGAu gu    ugc c
 |||  ||||   |||||||||   |||| ||||| ||    ||| a
 aaa  cgac   gaaaccaua   ucga aucua ua    aug u
u   uu    cuc         uuu    a     c  ---u   u 

>dwi-mir-314 (-32.40)   [dwi-miR-314:70-90]

u  u       g     u   au     uaguu    ---a        a 
 cg aacuugu uggcu cga  guacc     gagg    aaaauuca u
 || ||||||| ||||| |||  |||||     ||||    ||||||||  
 GC UUGAAUA ACCGA GCU  UAUgg     cucc    uuuuaggu g
G  -       -     -   --     ----u    auug        u 

>dwi-mir-282 (-39.90)   [dwi-miR-282:11-38]

ua     -auaA           AC      U      -Ug a 
  uccuu     AUCUAGCCUCU  UAGGCU UGUCUG   c u
  |||||     |||||||||||  |||||| ||||||   | u
  aggaa     uggauuggaga  auccga acagac   g u
ag     ccaug           gu      u      uua g 

>dwi-mir-124 (-33.90)   [dwi-miR-124:57-79]

--       guacguuuuu   c      c      ag    a    uua 
  ucguuug          cuc ugguau cacugc  gccu uaug   u
  |||||||          ||| |||||| ||||||  |||| ||||   u
  agcaagc          gaG ACCGUA GUGGCG  CGGA AUac   u
aa       ----------   A      A      CA    -    cag 

>dwi-mir-280 (-22.10)   [dwi-miR-280:9-35]

gg    -ua     U   G                --A      
  cuuu   UGUAU UAC UUGCAUAUGAAAUGAU   uuuau 
  ||||   ||||| ||| ||||||||||||||||   |||| a
  gaag   acgug aug gacguauauuuuauua   aaaug 
--    cca     u   -                gac      

>dwi-mir-278 (-38.00)   [dwi-miR-278:57-78]

gu      acgg     c       c     a  a     -   uc 
  aauggu    ugcga cggauga gguuc ca cgacc gug  a
  ||||||    ||||| ||||||| ||||| || ||||| |||  a
  uuaccg    augUU GCCUGCU UCAGG GU GCUgg cau  u
gu      --ca     U       U     -  G     u   uu 

>dwi-mir-13a (-27.00)   [dwi-miR-13a:51-72]

    u     u      g        --aau    ccau 
uacg aacuc ucaagg gguuguga     guug    u
|||| ||||| |||||| ||||||||     ||||     
gugc uUGAG AGUUUU CCGACACU     caac    u
    u     U      A        AUacu    uuau 

>dwi-mir-307 (-35.50)   [dwi-miR-307:56-75]

gc      -   a         ccu  g       -u    uau 
  cuugcu uug cucacucaa   gg ugugaug  uauu   a
  |||||| ||| |||||||||   || |||||||  ||||    
  ggacga agc GAGUGAGUU   CC ACACUac  augg   a
ua      u   -         CCU  A       cu    uau 

>dwi-mir-125 (-31.70)   [dwi-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dwi-mir-10 (-28.72)   [dwi-miR-10:9-29]

    gucu   -  G    U             auacu 
cuac    ACC CU UAGA CCGAAUUUGUuuu     a
||||    ||| || |||| |||||||||||||     g
ggug    ugg ga aucu ggcuuaaacagga     u
    aauu   a  g    u             auuuu 

>dwi-mir-9a (-29.00)   [dwi-miR-9a:10-32]

    -     U       UAU      G     -  gau 
gcua uguug CUUUGGU   CUAGCU UAUGA gu   a
|||| ||||| |||||||   |||||| ||||| ||    
cgau auaau gaagcca   gaucga auacu ca   c
    u     u       uuc      a     g  aua 

>dwi-mir-318-1 (-27.20)   [dwi-miR-318:45-66]

-           c  c         uu  -   ca 
 uuuaugggaua ac aaguucagu  ug ucg  u
 ||||||||||| || |||||||||  || |||  u
 agauACUCUAU UG UUCGGGUCA  ac agc  c
g           U  U         CU  g   ac 

>dwi-mir-2c (-23.60)   [dwi-miR-2c:58-80]

-u    c  u       -      aag     aagaaa     uuuu  au 
  cuua uu caauguc aucaaa   ggcug      gauau    gc  u
  |||| || ||||||| ||||||   |||||      |||||    ||  u
  gagu aa guuaCGG UAGUUU   CCGAC      CUAUg    cg  g
ac    -  c       G      CGA     -----A     ----  aa 

>dwi-mir-315 (-32.20)   [dwi-miR-315:12-33]

       auaa   UG          A       cu auuac 
cacuuau    UUU  AUUGUUGCUC GAAAGCc  c     u
|||||||    |||  |||||||||| |||||||  |      
gugaaua    aaa  uaauaacgag cuuucgg  g     u
       aacc   gu          -       uu acuau 

>dwi-mir-31b (-42.00)   [dwi-miR-31b:12-33]

---       g u     A     UC  A       aaagucacacaaaaucauaaaauguuugccguuu 
   acuagug a uUGGC AGAUG  GG AUAGCUG                                  u
   ||||||| | ||||| |||||  || |||||||                                   
   ugauuac u aacug ucuac  cc uaucggc                                  g
guu       g u     a     -u  g       auuaaaaacuuuaguuauuuuaaguguuguuauu 

>dwi-mir-13b-2 (-22.30)   [dwi-miR-13b:44-65]

----g          a      gc    uuaac g 
     cgucaaaaug cuguga  uaug     c g
     |||||||||| ||||||  ||||     | u
     GCAGUUUUAC GACACU  AUac     g c
cuUGA          C      --    uuaaa a 

>dwi-mir-308 (-23.56)   [dwi-miR-308:42-63]

           u       u    uucaau 
cucgcaguaua uuuugug uuug      u
||||||||||| ||||||| ||||      u
GAGUGUCAUAU AGGACAC AAac      g
           U       U    ucaacu 

>dwi-mir-87-1 (-30.20)   [dwi-miR-87:61-81]

-  u     auu        -u  c     g     uu ccaauu   a 
 ca auuuc   cgcgccug  au uugcu aaccg  a      gug u
 || |||||   ||||||||  || ||||| |||||  |      ||| c
 gu uaaag   GUGUGGAC  UA AACGA UUggc  u      uac a
u  u     agu        UU  A     G     cu ------   u 

>dwi-mir-6-2 (-29.90)   [dwi-miR-6:69-90]

-    c       u       c       uauau      g   uau 
 accg agggaac gucgcug ugauaua     auuauu uua   a
 |||| ||||||| ||||||| |||||||     |||||| |||   u
 uggU UUUCUUG CGGUGAC ACUAUau     uaguaa aau   a
u    U       U       -       -cuuu      a   uua 

>dwi-mir-263a (-36.10)   [dwi-miR-263a:12-35]

--      g   a  UA   G     GA   AU       -  u  u 
  aucucg cac GU  AUG CACUG  AGA  UCACggg gu uu a
  |||||| ||| ||  ||| |||||  |||  ||||||| || || u
  uagggc gug ua  uac gugau  ucu  agugccc ca aa u
uu      -   g  uc   g     uc   --       a  c  u 

>dwi-mir-6-1 (-26.12)   [dwi-miR-6:45-66]

ag             ug     uuu    cccuu 
  uagagagaauagu  cugug   uaug     u
  |||||||||||||  |||||   ||||     u
  gUUUUUCUUGUCG  GACAC   AUac     c
gu             GU     --U    uuuaa 

>dwi-mir-277 (-38.82)   [dwi-miR-277:60-82]

--   a g       gc  -   gu    -            --  gaaaa 
  uug a guuuugg  ug cgu  cagg agugcauuugca  cu     u
  ||| | |||||||  || |||  |||| ||||||||||||  ||     u
  aac u caagacc  AC GCA  GUCU UCACGUAAAUgu  ga     u
cu   a g       uu  A   UG    A            uc  aaauc 

>dwi-mir-5 (-25.90)   [dwi-miR-5:5-27]

--    -       C              ---   uuag 
  gcua AAAGGAA GAUCGUUGUGAUAU   Gcg    a
  |||| ||||||| ||||||||||||||   |||     
  cgau uuuccuu uuagugacacuaua   ugc    u
cg    a       -              uau   cacu 

>dwi-mir-33 (-42.41)   [dwi-miR-33:13-33]

ga            -G           C C        ugcuccaaaaaaaaa 
  aguuacacgaAG  UGCAUUGUAGU G AUUGucug               a
  ||||||||||||  ||||||||||| | ||||||||               a
  ucagugugcuuc  acgugacguca c uaacggac               a
--            ga           a a        uuaucuuugaccccc 

>dwi-mir-14 (-28.90)   [dwi-miR-14:41-61]

        c    c       c      cu 
ugugggag gaga gaggacu acugug  u
|||||||| |||| ||||||| ||||||  u
auAUCCUC CUCU UUUCUGA Ugauau  u
        U    U       C      au 

>dwi-mir-31a (-31.10)   [dwi-miR-31a:15-37]

      uuuc        A     U         UGAuaauau 
ucuguu    gaauUGGC AGAUG CGGCAUAGC         u
||||||    |||||||| ||||| |||||||||         u
agauaa    uuugacug ucuac gucguaucg         u
      cuua        a     -         cgaaaagau 

>dwi-mir-275 (-37.90)   [dwi-miR-275:58-80]

--    cuu   u         -a    ug   ag     a  aauu 
  gucu   acc ugcgcgcua  ucag  acc  ggcug gu    u
  ||||   ||| |||||||||  ||||  |||  ||||| ||    u
  caga   ugg GCGCGCGAU  AGUC  UGG  CUgac ua    a
ac    uuu   u         GA    CA   -A     a  acuu 

>dwi-mir-3 (-26.10)   [dwi-miR-3:53-74]

ug   u               g    u   ucuuc  gu 
  auu ugggaugcauuuugu cagu aug     au  g
  ||| ||||||||||||||| |||| |||     ||   
  uaa ACUCUGUGUGAAACG GUCA Uac     ua  a
--   u               G    C   ucucu  au 

>dwi-mir-9b-1 (-38.80)   [dwi-miR-9b:14-36]

-   --u          C         UUU    G     ug   g 
 gca   auuauuuggU UUUGGUGAU   AGCU UAUGg  uau a
 |||   |||||||||| |||||||||   |||| |||||  |||  
 cgu   ugguaaacca aaaccauua   ucga auacc  aua g
a   uuu          a         -uu    g     ua   c 

>dwi-mir-281-1 (-34.10)   [dwi-miR-281-1*:15-36] [dwi-miR-281:58-80]

      aguga           -UG     C      ccag     c 
cgaaua     auaAAGAGAGC   UCCGU GACAGU    uuaaa g
||||||     |||||||||||   ||||| ||||||    |||||  
gcuuau     UGUUUCUCUCG   AGGUA CUGUca    aauuu a
      -agua           UUA     -      ---a     u 

>dwi-mir-9b-2 (-38.80)   [dwi-miR-9b:14-36]

-   --u          C         UUU    G     ug   g 
 gca   auuauuuggU UUUGGUGAU   AGCU UAUGg  uau a
 |||   |||||||||| |||||||||   |||| |||||  |||  
 cgu   ugguaaacca aaaccauua   ucga auacc  aua g
a   uuu          a         -uu    g     ua   c 

>dwi-mir-100 (-27.10)   [dwi-miR-100:12-33]

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   a
ac    c     ga       ac   ca      u u uau 

>dwi-mir-4 (-25.50)   [dwi-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag      u 
u  caau a  uuc  uggu guc agc     gugauu c
|  |||| |  |||  |||| ||| |||     |||||| u
g  guug u  aAG  ACCA CAG UCG     UAcuag c
 gu    c ug   UU    A   A   --AAA      u 

>dwi-mir-288 (-21.40)   [dwi-miR-288:63-85]

caggucguaauuagcagcgcacaacauuc       -au      --    g 
                             gucggcg   aauuaa  ugac u
                             |||||||   ||||||  ||||  
                             UAGCUGU   UUgguu  acug u
---------gccggcacaGUACUUUACUU       ACU      gc    g 

>dwi-mir-133 (-34.60)   [dwi-miR-133:56-77]

ua    -    aaug           cauc  gu     -  auuu 
  caac acug    uagcugguuga    gg  cagau cu    a
  |||| ||||    |||||||||||    ||  ||||| ||     
  guug ugac    GUCGACCAACU    CC  GUUua ga    u
ua    g    -gaU           -UCC  UG     c  aguu 

>dya-mir-274 (-42.90)   [dya-miR-274:16-41]

ug              --       C  A  CU           gu      
  uguugcaguuucgU  UUUGUGA CG CA  AACGGGUAAUu  uuggu 
  ||||||||||||||  ||||||| || ||  |||||||||||  |||| c
  acgacguuaaagua  aaacacu gc gu  uugcucauuag  gaccg 
-a              cu       a  -  uu           --      

>dya-mir-87 (-30.30)   [dya-miR-87:59-79]

--  u     auu        -u  c     g     uuacaauuau      
  ca auuuc   cgcgccug  au uugcu aaccg          ggucu 
  || |||||   ||||||||  || ||||| |||||          |||| u
  gu uaaag   GUGUGGAC  UA AACGA UUggc          cuagc 
uu  u     agu        UU  A     G     ----------      

>dya-mir-307 (-40.10)   [dya-miR-307:56-75]

u        -   a         ccu  g       -u    uc 
 gucuugcu uug cucacucaa   gg ugugaug  uauu  g
 |||||||| ||| |||||||||   || |||||||  ||||  a
 caggacga agc GAGUGAGUU   CC ACACUac  augg  u
a        u   -         CCU  A       cu    ua 

>dya-mir-317 (-38.20)   [dya-miR-317:56-79]

    --a  u         aua    --     c      u aa  a 
augc   ac gccauuggg   cacc  cugug ucgcuu g  ug a
||||   || |||||||||   ||||  ||||| |||||| |  || a
ugcg   ug cggUGACCU   GUGG  GACAC AGUgaa c  ac u
    guu  c         AUG    UC     A      - ga  g 

>dya-mir-13b-2 (-26.10)   [dya-miR-13b:44-65]

gu   g          a      gcua      uu 
  aac cgucaaaaug cuguga    ugugga  u
  ||| |||||||||| ||||||    ||||||   
  uUG GCAGUUUUAC GACACU    AUacuu  g
gu   A          C      ----      ca 

>dya-bantam (-25.50)   [dya-bantam:52-74]

au     uac    c          uu      g   -  uu 
  uugac   gaaa cgguuuucga  ugguuu acu gu  u
  |||||   |||| ||||||||||  |||||| ||| ||  u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga ca  c
--     ---    A          UU      G   a  ua 

>dya-mir-4 (-22.90)   [dya-miR-4:49-69]

 ug    u gu   uu    c   c   cuuag    - uu 
u  caau a  uuc  uggu guc agc     guga c  u
|  |||| |  |||  |||| ||| |||     |||| |   
g  guug u  aAG  ACCA CAG UCG     UAcu g  u
 gu    c ug   UU    A   A   --AAA    a uc 

>dya-mir-100 (-27.10)   [dya-miR-100:12-33]

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   a
ac    c     ga       ac   ca      u u uau 

>dya-mir-281-2 (-32.60)   [dya-miR-281-2*:15-36] [dya-miR-281:60-82]

      gug a ug        -UA     C      caagu    a 
cgaaua   a a  AAGAGAGC   UCCGU GACAGU     uaau c
||||||   | |  ||||||||   ||||| ||||||     ||||  
gcuuau   u U  UUCUCUCG   AGGUA CUGUca     guua c
      -aa a GU        UUA     -      -uaau    a 

>dya-mir-279 (-36.40)   [dya-miR-279:60-81]

au         u          a     c  ugcu     uug   u 
  acuacuguu uuagugggug ggguc ag    ucaca   auu u
  ||||||||| |||||||||| ||||| ||    |||||   ||| c
  ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   uga u
cu         u          A     A  ----     uua   u 

>dya-mir-33 (-33.40)   [dya-miR-33:15-35]

ca      u    a  -G       U   C C        ucc a 
  gagaug cacg AG  UGCAUUG AGU G AUUGucug   c a
  |||||| |||| ||  ||||||| ||| | ||||||||   |  
  cuuuac gugu uc  acgugac uca c uaacggac   g u
ca      -    c  ga       u   a a        uuc u 

>dya-mir-283 (-29.55)   [dya-miR-283:15-35]

ac     uc      AA           U         agcuaagccu 
  gauuc  aaaggU  AUAUCAGCUGG AAUUCUggg          a
  |||||  ||||||  ||||||||||| |||||||||           
  uuaag  uuuuca  uaugguugacu uuaaggcuc          a
--     uu      gc           -         acaaaguaua 

>dya-mir-280 (-26.30)   [dya-miR-280:10-36]

-u      --ua     U   G                --A      
  ggcuuu    UGUAU UAC UUGCAUAUGAAAUGAU   uuuau 
  ||||||    ||||| ||| ||||||||||||||||   |||| a
  cuggag    acgua aug gacguauauuuuauua   aaaug 
uc      uuca     u   -                gac      

>dya-mir-8 (-31.42)   [dya-miR-8:53-75]

        cu uu -       -   g     c      uccuu 
aaggacau  g  c acaucuu acc ggcag auuaga     u
||||||||  |  | ||||||| ||| ||||| ||||||     u
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu     u
        -- cu C       A   A     A      caaua 

>dya-mir-305 (-24.50)   [dya-miR-305:8-30]

     cu U         U  G     CU  u  ggc 
caugu  A UGUACUUCA CA GUGCU  Gg gu   c
|||||  | ||||||||| || |||||  || ||    
guaua  u acaugaagu gu cacgg  cc ca   c
     ac c         u  a     --  -  aug 

>dya-mir-306 (-48.20)   [dya-miR-306:15-36] [dya-miR-306*:52-73]

    -   c  ug  U       UU           --   - u 
gucc acu gg  gc CAGGUAC  AGUGACUCUCA  Aug c u
|||| ||| ||  || |||||||  |||||||||||  ||| |  
cagg uga cc  CG GUCCGUG  UCACUGGGGGu  uac g u
    a   -  gu  U       UC           uu   a u 

>dya-mir-9a-1 (-29.00)   [dya-miR-9a:10-32]

    -     U       UAU      G     -  gau 
gcua uguug CUUUGGU   CUAGCU UAUGA gu   a
|||| ||||| |||||||   |||||| ||||| ||    
cgau auaau gaagcca   gaucga auacu ca   a
    u     u       uuc      a     g  aua 

>dya-mir-282 (-38.80)   [dya-miR-282:10-37]

uu    -auaA           AC      U      Ugcaua g 
  ccuu     AUCUAGCCUCU  UAGGCU UGUCUG      c a
  ||||     |||||||||||  |||||| ||||||      |  
  ggaa     uggauuggaga  auccga acagac      g a
gu    ccaug           au      u      -uagcc a 

>dya-mir-133 (-36.10)   [dya-miR-133:55-76]

ug    -    ug             cauc  gu     -  guu 
  caac gcug  uguagcugguuga    gg  cagau cu   u
  |||| ||||  |||||||||||||    ||  ||||| ||   u
  guug ugac  aUGUCGACCAACU    CC  GUUua ga   u
ua    g    cg             -UCC  UG     c  acc 

>dya-mir-304 (-33.30)   [dya-miR-304:12-34]

    ca    a       AAU       U     c -   u  g 
gcag  uuga UAAUCUC   UUGUAAA GUGAG g guu ga c
||||  |||| |||||||   ||||||| ||||| | ||| ||  
cguc  agcu guuagag   aacguuu cacuc c cag uu c
    ag    c       guu       -     a g   u  a 

>dya-mir-3 (-28.70)   [dya-miR-3:43-64]

    c         uc    g    c    uuc 
gauc ugggaugca  uugu cagu augu   c
|||| |||||||||  |||| |||| ||||   a
cuag ACUCUGUGU  AACG GUCA Uaca   u
    a         GA    G    C    cuc 

>dya-mir-2b-2 (-36.90)   [dya-miR-2b:54-76]

       a          -         a   --uuu  cuu 
uuguguc uucuucaaag ugguuguga aug     gc   u
||||||| |||||||||| ||||||||| |||     ||    
agcgcag GAGGAGUUUC ACCGACACU Uac     cg   u
       C          G         A   uuauc  ucu 

>dya-mir-14 (-28.30)   [dya-miR-14:41-61]

        c    cg      c     gcu 
ugugggag gaga  gggacu acugu   u
|||||||| ||||  |||||| |||||   a
auAUCCUC CUCU  UUCUGA Ugaua   u
        U    UU      C     aau 

>dya-mir-314 (-29.40)   [dya-miR-314:70-90]

u  u       g     u   au     uaguu    ---a    c  ca 
 cg aacuugu uggcu cga  guacc     gagg    aaaa cc  u
 || ||||||| ||||| |||  |||||     ||||    |||| ||   
 GC UUGAAUA ACCGA GCU  UAUgg     cucc    uuuu gg  g
G  -       -     -   --     ----u    auug    a  cu 

>dya-mir-6-3 (-31.10)   [dya-miR-6:53-74]

    a             ug   a        uuc  aa 
caaa agaagggaacggu  cug ugauguag   ga  c
|||| |||||||||||||  ||| ||||||||   ||  u
guuu uUUUUUCUUGUCG  GAC ACUAUauu   cu  c
    a             GU   -        uaa  cu 

>dya-mir-318 (-24.90)   [dya-miR-318:43-64]

u          c   c        uu   cgca 
 uuaugggaua aca aguucagu  ugu    c
 |||||||||| ||| ||||||||  |||     
 aguACUCUAU UGU UCGGGUCA  acg    u
g          U   U        CU   aaca 

>dya-mir-316-1 (-29.00)   [dya-miR-316:16-37]

      -    c   u           G   -A   G    ucau 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uua gcggaaaaagg gaa  gac gcaa    u
      u    u   u           -   ag   a    caac 

>dya-mir-34 (-37.50)   [dya-miR-34:14-35]

ug   a  -   uu        U  U   C        --ua c    ua 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug    g caau  u
  ||| || |||  |||||||| || ||| ||||||||    | ||||  u
  cga ac gcg  gccgucac uc auc accgacac    c guug  g
--   -  a   cc        u  u   -        uuaa a    cc 

>dya-mir-10 (-31.00)   [dya-miR-10:9-29]

     ucu   -  G    U             auacu 
ccacg   ACC CU UAGA CCGAAUUUGUuuu     a
|||||   ||| || |||| |||||||||||||      
ggugu   ugg ga aucu ggcuuaaacagga     g
     guu   a  g    u             auuuu 

>dya-mir-1 (-35.00)   [dya-miR-1:55-76]

ca   uuu  --ga            c        a   -  auau 
  gcc   ga    guuccaugcuuc uugcauuc aua gu    a
  |||   ||    |||||||||||| |||||||| ||| ||     
  cgg   cu    cGAGGUAUGAAG AAUGUAAG Uau cg    c
ag   --u  aaag            A        G   a  aacu 

>dya-mir-315-2 (-32.43)   [dya-miR-315:12-33]

       auaa   UG          A       cuuacua 
cacuuau    UUU  AUUGUUGCUC GAAAGCc       u
|||||||    |||  |||||||||| |||||||       u
gugaaua    aaa  uaauaacgag cuuucgg       u
       gacc   gu          -       ucgacaa 

>dya-mir-309 (-16.20)   [dya-miR-309:44-65]

      c       c   uu u  u   c aau 
auuaua gacaaac uug  c gu uug c   u
|||||| ||||||| |||  | || ||| |   u
uaauAU CUGUUUG AAU  G CA Gac g   c
      C       A   GG U  C   c auc 

>dya-mir-13b-1 (-21.20)   [dya-miR-13b:43-64]

   -ug           u      acu    uauu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    g
   uUG           C      ---    uaac 

>dya-mir-278 (-37.20)   [dya-miR-278:57-78]

gu      acgg     c       u     a  a     g   cc 
  aauggu    ugcga cggauga gguuc ca cgacc ugu  u
  ||||||    ||||| ||||||| ||||| || ||||| |||  u
  uuaccg    augUU GCCUGCU UCAGG GU GCUgg gca  u
gu      --ca     U       U     -  G     -   aa 

>dya-mir-284 (-44.80)   [dya-miR-284:64-92]

--         c              acuguguagccugugagggcaag 
  guugcaguu cuggaauuaaguug                       g
  ||||||||| ||||||||||||||                        
  cggcGUUAA GACCUUAGUUCAAC                       c
cc         C              GACUGAAGUcuucgucaugaguu 

>dya-mir-285 (-30.57)   [dya-miR-285:64-85]

--  ga       -a     ga    u      a    uaucaagacaac 
  uc  aucgaag  acuga  ucga uggugc uaga            c
  ||  |||||||  |||||  |||| |||||| ||||             
  ag  uaguuuu  UGACU  AGCU ACCACG AUcu            c
aa  aa       CG     AA    U      -    caacuuaacuca 

>dya-mir-2b-1 (-28.60)   [dya-miR-2b:48-70]

  u    ug         -    g    ----c      u 
cu caac  ucuucaaag uggc guga     auguug c
|| ||||  ||||||||| |||| ||||     ||||||  
gg guug  AGGAGUUUC ACCG CACU     uauaac a
  c    CG         G    A    AUacu      a 

>dya-mir-iab-4 (-25.20)   [dya-miR-iab-4-5p:7-28] [dya-miR-iab-4-3p:41-64]

    -aa            U    C   Ag  u 
ucgu   ACGUAUACUGAA GUAU CUG  ug a
||||   |||||||||||| |||| |||  || u
agca   UGCAUAUGACUU CAUA GGC  au c
    CAA            C    U   cu  c 

>dya-mir-311a (-17.60)   [dya-miR-311a:50-71]

ua    g     c  a    auc  c u      -   cu 
  gaua uuuug gg cggu   ug g caauau uuc  u
  |||| ||||| || ||||   || | |||||| |||  g
  cuau aaAGU CC GCCA   AC C GUUAUa aag  u
aa    a     -  G    CUU  A -      u   au 

>dya-mir-310 (-34.40)   [dya-miR-310:53-74]

-    -aa       c   a    uc     g       -    u 
 acac   acauuug agg cggg  gugug cagugua uuga u
 ||||   ||||||| ||| ||||  ||||| ||||||| ||||  
 ugug   uguaaaU UCC GCCC  CACAC GUUAUau gauu u
u    acc       U   C    UU     -       c    c 

>dya-mir-281-1 (-32.51)   [dya-miR-281-1*:15-36] [dya-miR-281:58-80]

      ag  a           -UG     C      ccagaauu 
cgaaua  ug auaAAGAGAGC   UCCGU GACAGU        c
||||||  || |||||||||||   ||||| ||||||        a
gcuuau  au UGUUUCUCUCG   AGGUA CUGUca        u
      -a  a           UUA     -      cuauaauu 

>dya-mir-13a (-26.89)   [dya-miR-13a:48-69]

    u     c      -        a   ucgccua 
uacg aacuc ucaaag gguuguga aug       u
|||| ||||| |||||| |||||||| |||        
gugc uUGAG AGUUUU CCGACACU Uac       u
    u     U      A        A   ucaucua 

>dya-mir-288 (-30.51)   [dya-miR-288:66-88]

c    a      -------   ua  --     a      u    g  a  a 
 gguc ugucgu       aau  gc  ggagc cggcgu gccg cg ua u
 |||| ||||||       |||  ||  ||||| |||||| |||| || || u
 ccgg acaGUA       UUA  UG  CUUUg guugca uggu gc gu a
-    c      CUUUACU   GC  UA     -      c    g  a  a 

>dya-mir-210 (-37.02)   [dya-miR-210:52-72]

aa   -a     ugc        gc   -         uuaga 
  ggu  cuuau   agcugcug  cac ugcacaaga     c
  |||  |||||   ||||||||  ||| |||||||||     u
  ccg  gaaug   UCGGCGAC  GUG GCGUGUUcu     u
ua   ga     uuA        -A   U         cagaa 

>dya-mir-125 (-31.70)   [dya-miR-125:29-50]

     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  ua  gg cucu g  uugaacacu  ga  a
     gu    --      --ca gu  -u  c    a uu         uu  cc 

>dya-mir-6-1 (-25.70)   [dya-miR-6:47-68]

cg             ug     c    ag uaau 
  uagagggaauagu  cugug ugua  u    a
  |||||||||||||  ||||| ||||  |    a
  gUUUUUCUUGUCG  GACAC AUau  a    c
au             GU     U    cu uaaa 

>dya-mir-2c (-27.30)   [dya-miR-2c:63-85]

   uau    c  u       -      aag     aagaaagauauuucu 
ucg   cuua uu caauguc aucaaa   ggcug               g
|||   |||| || ||||||| ||||||   |||||                
agc   gagu aa guuaCGG UAGUUU   CCGAC               c
   uac    -  c       G      CGA     ACUAUgcuaaguuua 

>dya-let-7 (-30.44)   [dya-let-7:11-31]

  u      uU   G     G           guaauu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa      a
|| ||||||  ||| ||||| |||||||||||       
ag ucguuu  uuc aucgu uaacauaucau      c
  u      cu   g     g           acuaca 

>dya-mir-277 (-40.30)   [dya-miR-277:59-81]

--   a g       gc  -   gu    -            c  aaa u 
  uug a guuuugg  ug cgu  cagg agugcauuugca ug   c a
  ||| | |||||||  || |||  |||| |||||||||||| ||   | u
  aac u caagacc  AC GCA  GUCU UCACGUAAAUgu ac   g c
cu   a g       uu  A   UG    A            -  gaa u 

>dya-mir-308 (-23.56)   [dya-miR-308:42-63]

           u       u    uuuccu 
cucgcaguaua uuuugug uuug      u
||||||||||| ||||||| ||||      u
GAGUGUCAUAU AGGACAC AAac      u
           U       U    ucaacg 

>dya-mir-5 (-22.02)   [dya-miR-5:3-25]

--ua       C               cguua 
    AAAGGAA GAUCGUUGUGAUAUG     u
    ||||||| |||||||||||||||     u
    uuuccuu uuagugacacuauac     c
aaua       -               aaucc 

>dya-mir-287 (-19.10)   [dya-miR-287:49-69]

g     gu   g uc   aa     c              
 uaugg  gug g  uga  uuuug acacauuuacagu 
 |||||  ||| |  |||  ||||| |||||||||||| a
 guguc  UAC U  GCU  AAAGU UGUGUaaauguua 
a     ag   G UU   -A     -              

>dya-mir-31a (-38.00)   [dya-miR-31a:14-36]

        ua       A     U         U  cg  g    g 
ucuguugg  aauUGGC AGAUG CGGCAUAGC GA  uu aaaa c
||||||||  ||||||| ||||| ||||||||| ||  || ||||  
agguaacu  uugacug ucuac gucguaucg cu  aa uuuu g
        ug       a     -         -  ag  g    a 

>dya-mir-31b (-37.21)   [dya-miR-31b:14-35]

    -     aau     A     UC  A       -----------agag    -----g    u   gcc 
caaa uaaug   uUGGC AGAUG  GG AUAGCUG               caca      cgga cga   u
|||| |||||   ||||| |||||  || |||||||               ||||      |||| |||    
guuu auuac   aacug ucuac  cc uaucggc               gugu      gccu gcu   u
    c     guu     a     -u  g       gaaaauuuuuuauaa    aaaaaa    -   agu 

>dya-mir-124 (-31.30)   [dya-miR-124:49-71]

ua     uu   c      c      ag    a    uau 
  cguuu  cuc ugguau cacugu  gccu uaug   u
  |||||  ||| |||||| ||||||  |||| ||||   u
  gcaag  gaG ACCGUA GUGGCG  CGGA AUac   c
ac     -c   A      A      CA    -    cac 

>dya-mir-2a-2 (-32.90)   [dya-miR-2a:44-66]

    a   c        --             - aua 
aucu agc ucaucaag  ugguugugauaug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g aac 

>dya-mir-219 (-34.60)   [dya-miR-219:19-41]

ua    -g     u   ua    U     AA           ----   a 
  auuc  auuuu agc  UGAU GUCCA  CGCAAUUCUUG    uug u
  ||||  ||||| |||  |||| |||||  |||||||||||    ||| a
  uaag  uaaag ucg  gcua cgggu  gcguugggaac    aac u
ca    aa     c   gc    -     ca           uuau   u 

>dya-mir-312 (-25.30)   [dya-miR-312:44-65]

gc      u    c    a     u  -  acu 
  uucggu cguc cagg gcaau cu gc   a
  |||||| |||| |||| ||||| || ||   u
  AGGCCG GCAG GUUC CGUUA ga cg   u
uu      -    A    A     U  u  aaa 

>dya-mir-286 (-26.70)   [dya-miR-286:64-86]

--         aaug    a   -    a     ucuuuuucaaaagag 
  uuaaaauug    gcga ugu cggu ugguc               g
  |||||||||    |||| ||| |||| |||||               u
  aauuuuaau    UGCU ACA GCCA AUCAG               u
aa         aUCG    C   A    G     Ugaagcgaacuagcu 

>dya-mir-315-1 (-32.43)   [dya-miR-315:12-33]

       auaa   UG          A       cuuacua 
cacuuau    UUU  AUUGUUGCUC GAAAGCc       u
|||||||    |||  |||||||||| |||||||       u
gugaaua    aaa  uaauaacgag cuuucgg       u
       gacc   gu          -       ucgacaa 

>dya-mir-9a-2 (-29.00)   [dya-miR-9a:10-32]

    -     U       UAU      G     -  gau 
gcua uguug CUUUGGU   CUAGCU UAUGA gu   a
|||| ||||| |||||||   |||||| ||||| ||    
cgau auaau gaagcca   gaucga auacu ca   a
    u     u       uuc      a     g  aua 

>dya-mir-263b-1 (-34.80)   [dya-miR-263b:15-35]

u    -acu      C        G G     U     -u   c 
 gcug    uugagu UUGGCACU G AGAAU CACag  uga u
 ||||    |||||| |||||||| | ||||| |||||  ||| u
 cggc    aauuua aaccgugg c ucuug guguc  auu u
u    aacu      a        g g     -     uu   a 

>dya-mir-92a (-38.30)   [dya-miR-92a:55-76]

aa  ug   uu        a     -     u   c    -ug a 
  ua  aau  cccguagg cggga aggug caa guuu   c u
  ||  |||  |||||||| ||||| ||||| ||| ||||   | u
  au  uug  gggUAUCC GCCCU UUCAC GUU Caaa   g u
ua  gu   gc        G     G     -   A    uaa u 

>dya-mir-9c (-27.60)   [dya-miR-9c:13-34]

    uu    uuU         UCU    G     u  uuc   c 
auuu  gcug   CUUUGGUAU   AGCU UAGAu gu   gcg a
||||  ||||   |||||||||   |||| ||||| ||   ||| c
uaaa  cgac   gaaaccaua   ucga aucua ua   ugu a
    uu    cuc         uuu    a     c  -ua   u 

>dya-mir-2a-1 (-41.90)   [dya-miR-2a:49-71]

         -      -         a    auuuc   u 
gcugggcuc ucaaag ugguuguga augc     cgc u
||||||||| |||||| ||||||||| ||||     ||| u
cgauuCGAG AGUUUC ACCGACACU Uacg     gcg g
         U      G         A    -----   c 

>dya-mir-9b (-31.50)   [dya-miR-9b:15-37]

u   --u        cUC         UUU    G     u ug u 
 gca   auuauuug   UUUGGUGAU   AGCU UAUGg g  u u
 |||   ||||||||   |||||||||   |||| ||||| |  |  
 cgu   ugguaaac   aaaccauua   ucga auacc u  g a
a   cuu        caa         -uu    g     u gu u 

>dya-mir-263a (-36.26)   [dya-miR-263a:13-36]

ga     g   a  UA   G     GA   AU       guacuu 
  ucucg cac GU  AUG CACUG  AGA  UCACggg      u
  ||||| ||| ||  ||| |||||  |||  |||||||      u
  agagc gug ua  uac gugau  ucu  agugccc      u
ua     -   g  uc   g     uc   --       aacaua 

>dya-mir-275 (-42.90)   [dya-miR-275:55-77]

ga    cc    u         -a    ug   gg     guuuu 
  gucu  uacc ugcgcgcua  ucag  acc  ggcug     u
  ||||  |||| |||||||||  ||||  |||  |||||      
  caga  gugg GCGCGCGAU  AGUC  UGG  CUgac     u
ua    cc    u         GA    CA   -A     auaua 

>dya-mir-6-2 (-23.80)   [dya-miR-6:48-69]

      c       cu ug   c       uuauu   a 
uaaccg agggaac  c  cug ugauaua     gag a
|||||| |||||||  |  ||| |||||||     |||  
guuggU UUUCUUG  G  GAC ACUAUau     cuu a
      U       UC GU   -       -----   c 

>dya-mir-316-2 (-29.00)   [dya-miR-316:16-37]

      -    c   u           G   -A   G    ucau 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uua gcggaaaaagg gaa  gac gcaa    u
      u    u   u           -   ag   a    caac 

>dya-mir-311b (-27.50)   [dya-miR-311b:50-71]

-    a     -     u   u  g  u      g    uu 
 aaca uuuuc ggcug gga ug gc aguacu ugau  u
 |||| ||||| ||||| ||| || || |||||| ||||   
 uugu gaaAG CCGAC CCU AC CG UUAUga auua  a
a    -     U     C   U  A  -      -    cg 

>dya-mir-276a (-38.62)   [dya-miR-276a:54-75]

cc      uug   uc    a     ag          uucau 
  ugguuu   cca  agcg gguau  aguuccuacg     u
  ||||||   |||  |||| |||||  ||||||||||     a
  accaga   ggu  UCGU CCAUA  UCAAGGAUgc     u
aa      --a   UC    G     CU          ucaaa 

>dya-mir-289 (-24.90)   [dya-miR-289:15-40]

ag     a  -aa      UA   AAGU    C  GCG         ccu 
  uuuac gu   aaUAAA  UUU    GGAG CU   ACUccaguc   c
  ||||| ||   ||||||  |||    |||| ||   |||||||||   u
  aaaug ca   uuguuu  gag    ucuc ga   uggggucag   g
ga     -  cgg      gc   ---c    u  --a         uca 

>dya-mir-263b-2 (-34.80)   [dya-miR-263b:15-35]

u    -acu      C        G G     U     -u   c 
 gcug    uugagu UUGGCACU G AGAAU CACag  uga u
 ||||    |||||| |||||||| | ||||| |||||  ||| u
 cggc    aauuua aaccgugg c ucuug guguc  auu u
u    aacu      a        g g     -     uu   a 

>dya-mir-7 (-31.50)   [dya-miR-7:15-37]

        u     U       U  U     U      uggu u 
gagugcau ucgua GGAAGAC AG GAUUU GUUGUu    c u
|||||||| ||||| ||||||| || ||||| ||||||    |  
uuuacgug ggcau ucuucug uc cuaaa uaacaa    g u
        c     -       u  c     -      uaau g 

>dya-mir-92b (-33.64)   [dya-miR-92b:57-78]

aa  u   - uga         u c c     uu      ugccuu 
  cg cac c   uguaggccg g c agugc  auuugu      u
  || ||| |   ||||||||| | | |||||  ||||||       
  gc gug g   aCGUCCGGC C G UCACG  UAAaca      u
ac  u   a -ug         C U A     -U      uaaagc 

>dya-mir-184 (-34.20)   [dya-miR-184*:16-36] [dya-miR-184:54-75]

cc    c  u  ua         -     U  -  CCG   g au 
  ggug au cg  cCCUUAUCA UUCUC CG CC   ugu c  u
  |||| || ||  ||||||||| ||||| || ||   ||| |   
  ccac ua gc  GGGAAUAGU AAGAG GC GG   aca g  g
aa    -  u  uC         C     -  A  Uca   - aa 

>dya-mir-11 (-30.40)   [dya-miR-11:48-68]

  a    u         ucu      cc    u  acu 
gc cuug caagaacuu   cuguga  ugcg gu   u
|| |||| |||||||||   ||||||  |||| ||    
cg gagu GUUCUUGAG   GACACU  ACgc cg   a
  c    C         UCU      --    -  aaa 

>dya-mir-79 (-37.40)   [dya-miR-79:57-78]

ag    -cuu    u        cgc       g     --   au 
  cugc    gcca ugcuuugg   uuuagcu uauga  uag  u
  ||||    |||| ||||||||   ||||||| |||||  |||  u
  gacg    cggu ACGAAACC   AGAUCGA AUacu  auc  a
ua    ucuu    U        AUU       A     uc   au 

>dya-mir-276b (-39.30)   [dya-miR-276b:57-78]

ac   -      uuua   uc    a     a           uuccu 
  cga agucuu    cca  agcg gguau gaguuccuacg     a
  ||| ||||||    |||  |||| ||||| |||||||||||      
  gcu ucagga    ggu  UCGU CCAUA UUCAAGGAUgc     u
ca   g      ----   UC    G     A           ugacu 

>pta-MIR1309 (-84.80)   [pta-miR1309:34-54]

--     uu  a  gag  acag   g  c    uU    --     -  UG  G    aaaagccuccacuuccguauguuuaucacccaccccagcguccaucgauuaugugauuuggucagcuuccucuacgggcuuucguucagagcaaauucaagau 
  uccag  gg ca   cu    uug au agau  GAUG  GCCCU UU  AA GACA                                                                                                       g
  |||||  || ||   ||    ||| || ||||  ||||  ||||| ||  || ||||                                                                                                        
  agguc  cc gu   ga    aau ug ucua  uuac  ugggg ga  uu cugu                                                                                                       a
cg     uu  -  aaa  aaaa   a  u    uu    uu     u  gu  g    gacguaucaaguuaggagggauucaaaaguacgauaguacuauuuggguccaaaguguccucaaguaguuacauguacuuagggccaaaguguccucaagaga 

>pta-MIR1310 (-35.90)   [pta-miR1310:2-24]

-a   A  --G      UAA   -     -g       cuca 
  GGC UC   GGGGCG   CGC CCCUc  accuauu    a
  ||| ||   ||||||   ||| |||||  |||||||    a
  ccg ag   ccucgu   gcg gggag  uggauaa    c
cg   -  uua      -cg   u     aa       auuu 

>pta-MIR1311 (-44.00)   [pta-miR1311:54-75]

--       ca      -      u     c c    a    ac 
  guaggaa  ggcggg cuggca aacuc g ccau uuuu  u
  |||||||  |||||| |||||| ||||| | |||| ||||   
  cauccuu  CCGCCU GACCGU UUGAG C ggua gaga  g
gu       ac      U      U     A U    -    cu 

>pta-MIR1312 (-45.80)   [pta-miR1312:100-121]

-  c  c        c  a       -a       u     gguugaaucgaaacagccaacacuuuc 
 uc cc aaaacauc au ucgcuau  ucucucc aauua                           a
 || || |||||||| || |||||||  ||||||| |||||                           g
 ag gg uuuuguag UA AGCGGUA  AGAGAGG UUaau                           u
u  c  c        a  C       AA       U     acgucuuuguuugauuauaaacuuagu 

>pta-MIR1313 (-78.10)   [pta-miR1313:10-30]

----    uau   A                 --CG     a     --      ca   a   auac    gugguaugguauccuacaguguauccccagucuaaccua 
    augg   ucU CCACUGAAAUUAUUGUU    aaaua caccu  gcaauu  ugg ugu    ugcc                                       g
    ||||   ||| |||||||||||||||||    ||||| |||||  ||||||  ||| |||    ||||                                        
    uacc   aga ggugacuuuaauaacaa    uuuau guggg  cguuga  acc aua    acgg                                       u
uagc    uuc   a                 ccua     -     ua      --   a   ----    gucaucuagggggugguacgguacacaacguugggacgu 

>pta-MIR1314 (-53.40)   [pta-miR1314:89-110]

-a     ---      -aauu    a      -  u   cu     ga      -      a      aauau       u 
  auucc   aauucc     gaua cauguu ag uag  gaaga  uucuuc aacauu gaggcc     agaauaa a
  |||||   ||||||     |||| |||||| || |||  |||||  |||||| |||||| ||||||     ||||||| u
  ugagg   uugagg     cuau guacga uc auc  cuuuu  AAGAGG UUGUAA UUCCGG     ucuuauu u
gg     aau      aaacu    c      a  c   uc     gc      A      G      CUaau       c 

>pta-MIR1315 (-88.90)   [pta-miR1315:155-175]

---   aa    ----    ag   c u     uc    ccga    gg    aucugcagacuggagcaccagcccaggacaaggcuuuggaggccggu 
   guc  ggau    uugg  gcc g caggu  ccaa    gucc  gacc                                               c
   |||  ||||    ||||  ||| | |||||  ||||    ||||  ||||                                               a
   cag  ccug    aACC  UGG C GUCCG  GGUu    uagg  cugg                                               g
uau   gg    agcc    CU   A U     GA    ----    aa    accuucucacgaggucagacgucuaccagggccugagccaacccuug 

>pta-MIR1316 (-25.80)   [pta-miR1316:55-75]

-----g  -a      ------         caaauu   ---     -aag     --a    a 
      gc  gaucca      gaauaagaa      ggg   caaug    gugua   aaga a
      ||  ||||||      |||||||||      |||   |||||    |||||   |||| a
      cg  uuaggu      cuuauucuu      ccu   GUUAC    CACAU   Uucu g
aaguaa  gg      uaacgu         ------   AAG     CAAA     ACC    a 

>osa-MIR1317 (-89.00)   [osa-miR1317-5p.2:22-45] [osa-miR1317-5p:46-67] [osa-miR1317-3p:119-142]

           c   ua           U              UUU         -C         A  u     u   a 
uauuaucguua caa  uccuAGAUUGC UUCAAGGUCAUUUC   AGGGAACCC  AUUCCCAUA Au cagua cca a
||||||||||| |||  ||||||||||| ||||||||||||||   |||||||||  ||||||||| || ||||| |||  
guaauagcagu guu  agGAUCUAAUG AGGUUCUAGUAAAG   ucccuuggg  uaaggguau ua gucgu ggu g
           c   ug           C              cau         aa         c  u     u   c 

>osa-MIR1318 (-70.60)   [osa-miR1318:37-56]

ggau  g     uugu   -g    ug  c      a     A           GA     -c    ------       cu    c 
    gu cguuc    ggg  gguu  gg ccugug UCAGG GAGAUGACACC  Caucg  cgga      auucguu  uggu u
    || |||||    |||  ||||  || |||||| ||||| |||||||||||  |||||  ||||      |||||||  |||| u
    ua guaag    ccc  ucag  uc ggauac agucc cucuacugugg  guagu  gccu      uaaguag  accg g
----  g     ---u   ag    --  a      a     c           ac     uu    gguagu       -u    u 

>osa-MIR1319 (-73.80)   [osa-miR1319:25-48]

-u               uaa             UC                 g      aa 
  augggugucgguuuu   gaaaaAACCGGCA  UGUAAUAUAUUAUAggu ucgguu  u
  |||||||||||||||   |||||||||||||  ||||||||||||||||| ||||||  u
  uauccacagccaaaa   uuuuuuuggccgu  auauuauauaauaucca agccaa  a
uc               ---             ga                 g      aa 

>osa-MIR1320 (-41.30)   [osa-miR1320:13-33] [osa-miR1320-3p:62-82]

---u    c    u          G             uu    cggga 
    uagg cuac uUGGAACGGA GAAUUUUAUAGga  uuug     a
    |||| |||| |||||||||| |||||||||||||  ||||      
    aucc gaug AACCUUGCUU CUUAAAAUGUccu  agac     u
gauu    c    u          A             -u    aauuu 

>bta-mir-1-2 (-35.64)   [bta-miR-1:53-74]

a      c                     ac     ugaaca 
 ccuacu agaguacauacuucuuuaugu  ccaua      u
 |||||| |||||||||||||||||||||  |||||       
 ggaugg uuuUAUGUAUGAAGAAAUGUA  GGUau      a
c      u                     -A     cguaac 

>bta-mir-1-1 (-29.80)   [bta-miR-1:49-70]

g    gg a                gc     ---   a 
 cuug  a acauacuucuuuaugu  ccaua   ugg c
 ||||  | ||||||||||||||||  |||||   ||| c
 ggac  U UGUAUGAAGAAAUGUA  GGUau   auc u
-    uu A                -A     cga   g 

>bta-mir-100 (-26.20)   [bta-miR-100:13-34]

ccuguugc    A   CG    UC   A      -  gg 
        caca ACC  UAGA  CGA CUUGUG gu  u
        |||| |||  ||||  ||| |||||| ||   
        gugu ugg  aucu  guu gaacac cg  a
---ugucu    a   au    gu   c      a  ug 

>bta-mir-101-1 (-47.30)   [bta-miR-101:51-71]

a       cuggc                  a    gucca 
 ggcugcc     ucaguuaucacagugcug ugcu     u
 |||||||     |||||||||||||||||| ||||      
 ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
a       uaggA                  -    aaauc 

>bta-mir-105b (-38.80)   [bta-miR-105b:13-34]

ugu         U  A          -   U     g ug 
   gcaucgugg CA AUGCUCAGAC UCC UGGUg c  c
   ||||||||| || |||||||||| ||| ||||| |  u
   ugugguauc gu uacgaguuug agg accac g  u
auc         -  g          u   u     - ua 

>bta-mir-105a (-43.40)   [bta-miR-105a:13-35]

ugu         U  A          UC        g ug 
   gcaucguag CA AUGCUCAGAC  CUGUGGUg c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcauc gu uacgaguuug  ggcaccac g  c
auc         -  g          ua        - ua 

>bta-mir-106b (-49.30)   [bta-miR-106b:12-32]

           -UA       G       A A     guc 
ccugccggggc   AAGUGCU ACAGUGC G Uagug   c
|||||||||||   ||||||| ||||||| | |||||    
ggacggccucg   uucaugg ugucacg c aucgu   u
           ucg       g       c -     gug 

>bta-mir-124a-2 (-42.00)   [bta-miR-124a:60-82]

----------aucaagaucagac     c  cc        a   ga        uaau 
                       ucugc cu  guguucac gcg  ccuugauu    g
                       ||||| ||  |||||||| |||  ||||||||    u
                       aggcg GA  CGUAAGUG CGC  GGAAUuaa    c
aaguucacgucggcggacauccg     a  AC        G   AC        caua 

>bta-mir-124b (-40.30)   [bta-miR-124b:53-75]

u    -   c    - c        a   ga        uaaug 
 gagg gcc cucu g guguucac gcg  ccuugauu     u
 |||| ||| |||| | |||||||| |||  ||||||||      
 cucc cgg gaGA C CGUAAGUG CGC  GGAAUuaa     c
c    g   a    A -        G   AC        cauau 

>bta-mir-128-2 (-40.50)   [bta-miR-128:52-72]

u ug       a          agg      cc    g gag 
 g  caguggg aggggggccg   cacugu  gaga u   u
 |  ||||||| ||||||||||   ||||||  |||| |    
 u  gucaucc UUUCUCUGGC   GUGACA  CUcu g   a
c gu       c          CAA      --    g acg 

>bta-mir-129-1 (-29.40)   [bta-miR-129:5-26]

    -       C   CU      G   uu cu  c 
ggau CUUUUUG GGU  GGGCUU CUg  c  cu u
|||| ||||||| |||  |||||| |||  |  ||  
ucua gaaaaac cca  cccgaa gac  g  ga a
    u       c   uu      g   -u au  c 

>bta-mir-129-2 (-50.90)   [bta-miR-129-5p:16-37] [bta-miR-129-3p:58-79]

--cu             -       C   CU      ---     acau 
    gcccuucgcgaau CUUUUUG GGU  GGGCUU   GCUgu    a
    ||||||||||||| ||||||| |||  ||||||   |||||     
    cgggaggcgcuUA GAAAAAC CCA  CCCGAA   cgaua    a
cacg             C       C   UU      ggc     acuc 

>bta-mir-130a (-42.50)   [bta-miR-130a:55-76]

u      -      a        c      ug  a   ucu  g 
 gcugcg ggccgg gcucuuuu acauug  cu cug   gc c
 |||||| |||||| |||||||| ||||||  || |||   ||  
 cgacgu ucgguU CGGGAAAA UGUAAC  GA gau   ug c
g      g      A        U      GU  C   cac  u 

>bta-mir-130b (-39.30)   [bta-miR-130b:51-72]

      c    ca       cc         a  g   gc 
ggccug cuga  cucuuuc  uguugcacu cu ugc  c
|||||| ||||  |||||||  ||||||||| || |||  c
ccggac ggcU  GGGAAAG  GUAACGUGA ga acg  c
      u    AC       UA         C  -   gu 

>bta-mir-133a-2 (-40.00)   [bta-miR-133a:52-73]

-      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 

>bta-mir-133a-1 (-34.40)   [bta-miR-133a:59-80]

ugggaccg     uuu    a       aa  u  a        aacug 
        aaugc   gcua agcuggu  aa gg accaaauc     u
        |||||   |||| |||||||  || || ||||||||      
        uuacg   cgau UCGACCA  UU CC UGGUUUag     u
-----uag     cgu    G       AC  C  C        guagc 

>bta-mir-133b (-40.30)   [bta-miR-133b:48-69]

-------       c        ca  c  a      u  g      
       cccugcu uggcuggu  aa gg accaag cc ucuuc 
       ||||||| ||||||||  || || |||||| || |||| c
       gggacga AUCGACCA  UU CC UGGUUU gg agagu 
aacgguc       c        AC  C  C      -  -      

>bta-mir-134 (-35.10)   [bta-miR-134:8-29]

c     gU        U  -A      U  cc   a 
 agggu  GUGACUGG UG  CCAGAG GG  agc c
 |||||  |||||||| ||  |||||| ||  ||| u
 uccca  cacugauc ac  ggucuc cc  uug c
c     ac        c  cg      -  ac   g 

>bta-mir-135a-2 (-35.10)   [bta-miR-135a:23-45]

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 

>bta-mir-135a-1 (-47.22)   [bta-miR-135a:17-39]

a g         u u          UU            uucua 
 g ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
 | ||||||||| | ||||||||||  ||||||||||||     u
 c ggggcggca g ggugccgagg  uagggauauacu     g
a g         c c          -u            cacuc 

>bta-mir-135b (-47.94)   [bta-miR-135b:14-36]

-----------   u                   CAU          uuacug 
           cuc gcuguggccUAUGGCUUUU   UCCUAUGUGA      u
           ||| |||||||||||||||||||   ||||||||||       
           gag ugacaucggguaccgaaaa   gggauguacu      u
ccgcgcgcggg   -                   -uc          caaacc 

>bta-mir-136 (-48.10)   [bta-miR-136:20-42]

uug    -       g        C     UUU          uuc 
   gaug agcccuc gaggACUC AUUUG   UGAUGAUGGA   u
   |||| ||||||| |||||||| |||||   ||||||||||   u
   cuac uugggag cuucugag uaaac   gcuacuaccu   a
-ua    c       a        -     ucu          cgc 

>bta-mir-137 (-49.10)   [bta-miR-137:59-81]

g u  u   --           ug   g           ug a     -  g 
 g cc cug  acucucuucgg  acg guauucuuggg  g uaaua cg a
 | || |||  |||||||||||  ||| |||||||||||  | ||||| || u
 c gg gac  ugagaggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
a -  c   ca           GA   G           GU -     u  a 

>bta-mir-138-1 (-51.70)   [bta-miR-138:21-43]

-    cac    c    g   AG             UCA      - gcca 
 cugg   ggug ggug ggc  CUGGUGUUGUGAA   GGCCGu c    a
 ||||   |||| |||| |||  |||||||||||||   |||||| |     
 gacc   ccac ccac cug  gaccacaacacuu   ucggca g    u
g    ---    c    a   -g             -ca      a agac 

>bta-mir-141 (-45.60)   [bta-miR-141:58-79]

ga      cu   u       --    c        -   ugg  ua 
  ccggcu  ggg ccaucuu  ccag acaguguu gga   uc  a
  ||||||  ||| |||||||  |||| |||||||| |||   ||  u
  ggucgg  ccc GGUAGAA  GGUC UGUCACAA ccu   ag  g
--      cc   -       AU    -        U   cga  ug 

>bta-mir-143 (-51.50)   [bta-miR-143:56-77]

---  - uc --ug      ag      g         g      u  -  ag 
   gc g  c    ucuccc  ccugag ugcagugcu caucuc gg uc  u
   || |  |    ||||||  |||||| ||||||||| |||||| || ||   
   cg c  g    agaggg  ggGCUC AUGUCACGA GUAGAG cu ag  u
cga  u uu uuga      aa      G         A      U  g  gg 

>bta-mir-144 (-39.40)   [bta-miR-144:50-71]

---- g    u      g        a         -a    gc 
    g gccc gacugg auaucauc uauacugua  guuu  a
    | |||| |||||| |||||||| |||||||||  ||||   
    c uggg cuGAUC UGUAGUAG AUAUGACAU  caga  a
cccu g    c      A        -         ca    gc 

>bta-mir-146b (-38.10)   [bta-miR-146b:26-49]

uaagagaacuu    -  -  u   u  G        A    A    CU  ga  u 
           uggc ca cc ggc cU AGAACUGA UUCC UAGG  GU  gc c
           |||| || || ||| || |||||||| |||| ||||  ||  ||  
           aucg gu gg ccg gg ucuugacu aggg aucc  ua  cg u
----cuaccac    u  c  c   u  -        c    -    cg  aa  a 

>bta-mir-146a (-38.80)   [bta-miR-146a:21-44]

-----cccaugu      u     uU            C        G  uc 
            guaucc cagcu  GAGAACUGAAUU CAUAGGUU Ug  a
            |||||| |||||  |||||||||||| |||||||| ||  g
            uauagg gucga  uucuugauuuga guguccag ac  u
uccuacuaucuc      -     -u            a        -  ug 

>bta-mir-147 (-23.90)   [bta-miR-147:49-70]

--  u    c   ug   a  c         --  ---   g 
  ua gaau uag  gaa ca uucugcaca  gg   cua a
  || |||| |||  ||| || |||||||||  ||   ||| u
  au uuua AUC  CUU GU AAGGCGUGU  cc   ggu u
gg  u    c   GU   C  A         Ga  aua   a 

>bta-mir-152 (-49.90)   [bta-miR-152:53-74]

u    -   c              g  a    cc    cgg   c 
 gucc ucc ggcccagguucugu au cacu  gacu   gcu u
 |||| ||| |||||||||||||| || ||||  ||||   |||  
 cagg agg ccGGGUUCAAGACA UA GUGA  CUga   cga g
c    c   c              G  C    --    ---   g 

>bta-mir-153-1 (-45.80)   [bta-miR-153:54-75]

c     g       c -             -c       --   au 
 ucacg cugccag g ucauuuuugugau  ugcagcu  agu  u
 ||||| ||||||| | |||||||||||||  |||||||  |||   
 ggugu gacgguc C AGUGAAAACACUG  ACGUUga  uca  c
c     g       a U             AU       cc   cu 

>bta-mir-153-2 (-41.30)   [bta-miR-153:53-74]

a     gg      -             gu       -a  aa 
 gcggu  ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g     aa      U             AU       cc  ag 

>bta-mir-154 (-31.00)   [bta-miR-154:15-36]

gc  a   u          UAU       GCC    - uuu 
  gg acu gaagaUAGGU   CCGUGUA   UUCG c   a
  || ||| ||||||||||   |||||||   |||| |   c
  cc uga uuuuuaucca   ggcacau   aagc g   u
aa  a   u          cuu       acu    a ugu 

>bta-mir-155 (-28.00)   [bta-miR-155:3-25]

u           U    A        uuua c 
 gUUAAUGCUAA CGUG UAGGGGUu    c u
 ||||||||||| |||| ||||||||    |  
 caauuacgauu guac auccucag    g c
a           -    -        -uca g 

>bta-mir-16a (-37.40)   [bta-miR-16a:14-35]

      ag   c          -  A        U u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
cgguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 

>bta-mir-181d (-44.00)   [bta-miR-181d:35-57]

uccccucccuua    a    gaaggu    aucA         G UG          g  aca 
            ggcc cagc      caca    ACAUUCAUU U  UCGGUGGGUu ug   g
            |||| ||||      ||||    ||||||||| |  |||||||||| ||    
            ccgg gucg      gugu    uguaaguag g  agccacccag ac   a
------cacaga    -    ------    -cac         g --          -  cag 

>bta-mir-182 (-46.54)   [bta-miR-182:25-48]

cgcc  -c   -u   uc -      uU       U -G      UCA      ugaggu 
    gc  gcc  gcc  c caccau  UUGGCAA G  UAGAAC   CACUgg      a
    ||  |||  |||  | ||||||  ||||||| |  ||||||   ||||||       
    cg  cgg  cgg  g guggua  aaccguu c  aucuug   guggcc      a
---a  ac   uu   ga c      uc       - ag      ---      uagggu 

>bta-mir-183 (-26.20)   [bta-miR-183:6-28]

    g      --AC     GA        --   ac 
cugu UAUGGC    UGGUA  AUUCACUG  uga  a
|||| ||||||    |||||  ||||||||  |||   
gaca auaccg    gccau  uaagugac  gcu  g
    a      ggaa     --        ug   cu 

>bta-mir-184 (-39.00)   [bta-miR-184:52-73]

c       auc         c      ag     uuu  ga 
 cagucac   cccuuauca uuuucc  ccagc   gu  c
 |||||||   ||||||||| ||||||  |||||   ||  u
 guuagug   GGGAAUAGU AAGAGG  GGUug   ca  c
a       gaU         C      CA     --u  au 

>bta-mir-185 (-50.20)   [bta-miR-185:14-35]

     u     a      A     G         Au  uc 
ggggg gaggg cUGGAG GAAAG CAGUUCCUG  gg  c
||||| ||||| |||||| ||||| |||||||||  ||   
ccuuc cuccc ggccuc cuuuc gucggggac  cc  c
     -     c      -     g         -c  uc 

>bta-mir-187 (-48.00)   [bta-miR-187:71-92]

ggccgggcuccccacgacacggu   aga    g    a           - --c   -  cu 
                       gug   ccuc ggcu caacacgggac c   ggg cg  g
                       |||   |||| |||| ||||||||||| |   ||| ||   
                       cgc   ggaG CCGA GUUGUGUUCUG G   ccc gc  c
--------------acgccugaa   -ag    G    C           U CUc   a  cu 

>bta-mir-188 (-39.80)   [bta-miR-188:15-36]

u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  gu  gggacguac  ccuccc     g c
c    u  -u   ac  uu         ac      caaaa u 

>bta-mir-24-1 (-26.32)   [bta-miR-24:6-28]

    g  G   A         UA     ucuca 
cucc GU CCU CUGAGCUGA  UCAGU     u
|||| || ||| |||||||||  |||||     u
gagg ca gga gacuugacu  gguca     u
    a  a   c         -c     cacau 

>bta-mir-190a (-32.50)   [bta-miR-190a:15-36]

u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cguuc g gaca c  uauacaaacuauaua  ucaac    u
c     u u    u cu               --     cuaa 

>bta-mir-190b (-30.60)   [bta-miR-190b:11-31]

-    u     -U               G     -   aa 
 ugcu cugug  GAUAUGUUUGAUAUU GGUUg uuu  u
 |||| |||||  ||||||||||||||| ||||| |||   
 auga gacau  uuauacaaacuguaa ucaac aag  u
g    c     uc               a     c   ga 

>bta-mir-193b (-41.20)   [bta-miR-193b:51-74]

   gu       u    gu    a    g  a  ag uua 
gug  cccagaa cggg  uuug gggc ag ug  u   u
|||  ||||||| ||||  |||| |||| || ||  |   g
uac  ggguUUU GCCC  AAAC CCCG UC Ac  a   u
   ug       C    UG    A    G  A  cu uuu 

>bta-mir-194-2 (-57.60)   [bta-miR-194:15-36]

u            cU         A      G     g  c 
 ggcucccacccc  GUAACAGCA CUCCAU UGGAa ua c
 ||||||||||||  ||||||||| |||||| ||||| ||  
 ccgggggugggg  uauugucgu ggggug accuu au u
a            uc         c      -     g  c 

>bta-mir-196a-2 (-45.10)   [bta-miR-196a:16-37]

a     uc                  A          a ug   
 gcuga  uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
 |||||  |||||||||||||||||| |||||||||| |  | u
 ugacu  acauugaguccgucaaag acaacggcuc a  uu 
c     --                  a          a gu   

>bta-mir-196a-1 (-33.10)   [bta-miR-196a:24-45]

u  a ugg       ga    a UA   A    C         - Gc u  a 
 ga c   aacugcu  guga u  GGU GUUU AUGUUGUUG G  c gg u
 || |   |||||||  |||| |  ||| |||| ||||||||| |  | ||  
 cu g   uugacgg  cacu a  cca caaa uacagcaac c  g uc u
c  c uca       --    c gc   c    u         a aa -  u 

>bta-mir-196b (-35.80)   [bta-miR-196b:16-38]

-      uc      uU       U  C           ucca 
 aacugg  ggugau  AGGUAGU UC UGUUGUUGGGA    c
 ||||||  ||||||  ||||||| || |||||||||||     
 uugacu  ucauua  uccguca ag acgacagcucu    c
g      --      cu       c  c           cuuu 

>bta-mir-197 (-43.40)   [bta-miR-197:50-71]

--gg    g   c    a       ca    ga   -   a 
    ggcu ugc gggu gagaggg  gugg  ggu aag g
    |||| ||| |||| |||||||  ||||  ||| |||  
    ccgg aCG CCCA CUCUUCC  CACU  cca uuc c
acga    g   A    C       AC    Uc   c   u 

>bta-mir-199a-2 (-30.50)   [bta-miR-199a-5p:6-27] [bta-miR-199a-3p:47-68]

   aaC       U        C   ------     g 
gcc   CCAGUGU CAGACUAC UGU      Ucagg g
|||   ||||||| |||||||| |||      |||||  
cgg   GGUUACA GUCUGAUG ACA      agucu g
   AUU       C        -   ugugua     c 

>bta-mir-202 (-44.90)   [bta-miR-202:19-39]

-------gcca    cu     u           -A           g   gu 
           cucg  guucc uuUUCCUAUGC  UAUACUUCUUU agg  c
           ||||  ||||| |||||||||||  ||||||||||| |||   
           gagc  cgggg aaaaggguacg  auguggagaaa ucc  u
gcguccccuug    cc     u           gg           -   gg 

>bta-mir-206 (-41.90)   [bta-miR-206:53-74]

u    c  a                     cc     -    u 
 gcuu cc aggccacaugcuucuuuauau  ccaua cgga u
 |||| || |||||||||||||||||||||  ||||| ||||  
 cgag gg uuuGGUGUGUGAAGGAAUGUA  GGUau guuu a
g    c  c                     -A     c    c 

>bta-mir-208a (-32.60)   [bta-miR-208a:44-65]

u   g           g  c  gg      c  a 
 gac ggcgagcuuuu gc cg  uuauac ug u
 ||| ||||||||||| || ||  |||||| || g
 cug uUGUUCGAAAA CG GC  AAUAug ac c
a   g           A  A  AG      c  u 

>bta-mir-208b (-31.00)   [bta-miR-208b:46-67]

--c        g          c   cg        cu 
   cucucagg aagcuuuuug ucg  uuauguuu  c
   |||||||| |||||||||| |||  ||||||||  a
   gggagucU UUUGGAAAAC AGC  AAUAuaag  u
gac        G          A   AG        cc 

>bta-mir-211 (-49.42)   [bta-miR-211:26-46]

-   ccug     -----     cug     U         CA     U    agggu 
 ucc    gcugu     gugac   ugggc UCCCUUUGU  UCCUU GCCc     u
 |||    |||||     |||||   ||||| |||||||||  ||||| ||||     c
 agg    cgaca     cacug   acucg ggggaaacg  aggga cggg     u
g   --ua     cccuc     cug     u         ac     -    gugag 

>bta-mir-212 (-49.20)   [bta-miR-212:32-54]

cggagccacccugcccgggcagc   c   -cA  U     CU      C      ccc     
                       gcg cgg   CC UGGCU  AGACUG UUACUg   gggc 
                       ||| |||   || |||||  |||||| ||||||   ||| c
                       cgc gcc   gg acuga  ucugac aaugac   cccg 
------------ccgccccgguc   a   acc  c     cc      -      --u     

>bta-mir-216a (-39.00)   [bta-miR-216a:19-40]

--------------   g   g  ag     u         CU   A      -  --a   u 
              gau gcu ug  uuggc UAAUCUCAG  GGC ACUGUG Ag   ugu c
              ||| ||| ||  ||||| |||||||||  ||| |||||| ||   |||  
              cua cga ac  aaucg auuaggguc  cug ugacac uc   aca a
guacucccguuccu   a   g  -a     u         -u   g      c  cug   u 

>bta-mir-216b (-32.60)   [bta-miR-216b:11-32]

--g       gaA         A  --CAAA      g  ac 
   cagacug   AAUCUCUGC GG      UGUGAu uc  u
   |||||||   ||||||||| ||      |||||| ||   
   gucugac   uuagagaug cc      acacua ag  a
aca       auc         c  auucac      a  aa 

>bta-mir-217 (-32.90)   [bta-miR-217:35-58]

aauauaauuaacacaga    uu     c c  a  C     C          U -   aag 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
                 ||||  ||||| | || || ||||| |||||||||| | |||    
                 caaa  cuacg c uc gu acgua uccuugacua c cug   a
--------------gaa    -u     a u  c  u     c          c a   gcu 

>bta-mir-218-1 (-47.60)   [bta-miR-218:25-46]

-    uuau  a   a   u      U         CU        Gg    -  g 
 gugg    gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc ca g
 ||||    || ||| ||| |||||| |||||||||  ||||||||  |||| ||  
 cauc    cg cgc cug aaggua cacgaacug  uugguaca  aaug gu u
a    -uuu  a   a   c      c         cc        -a    a  a 

>bta-mir-219-1 (-47.40)   [bta-miR-219-5p:19-40] [bta-miR-219-3p:62-82]

acuca       c     U   U     AA           uac a  c 
     ggagcuu gccac GAU GUCCA  CGCAAUUCUUg   g gu u
     ||||||| ||||| ||| |||||  |||||||||||   | || g
     ucucgag cgguG CUA CAGGU  GUGUUAAGAgc   c cg c
---gg       u     U   -     CG           caa -  g 

>bta-mir-223 (-42.20)   [bta-miR-223:66-87]

ccca  cuccu   -          cc u              gaguug      c a 
    gc     gca gugccaugcu  g guauuugacaagcu      gacacu c u
    ||     ||| ||||||||||  | ||||||||||||||      |||||| | g
    cg     cgu uacgguguga  C CAUAAACUGUUUGA      CUGUga g u
--ga  --auc   a          AC C              ------      u a 

>bta-mir-224 (-37.30)   [bta-miR-224:8-30]

       CA         U   U      A --ua    gu 
gggcuuu  AGUCACUAG GGU CCGUUU g    gaug  u
|||||||  ||||||||| ||| |||||| |    ||||   
cccgaaa  ucagugauc cca gguaaa c    uuac  g
       ca         -   u      a uuug    au 

>bta-mir-26a-1 (-46.80)   [bta-miR-26a:16-37]

a     -   g  u   U         C          g gca g 
 aggcc gug cc cgU CAAGUAAUC AGGAUAGGCU u   g u
 ||||| ||| || ||| ||||||||| |||||||||| |   |  
 uccgg cgc gg gca guucauugg ucuuauccgg g   c c
g     g   a  c   c         c          g -aa c 

>bta-mir-28 (-45.20)   [bta-miR-28:14-35]

   c         A        A       U  ----    gcc 
ggu cuugcccuc AGGAGCUC CAGUCUA UG    AGuu   u
||| ||||||||| |||||||| ||||||| ||    ||||    
uca ggacgggag uccucgag guuagau ac    ucag   u
   c         g        a       c  ccuu    ucu 

>bta-mir-296 (-50.00)   [bta-miR-296:47-68]

a         c        c  -         g   u    
 ggacccuuc ggagggcc cc cccaauccu uug gcu 
 ||||||||| |||||||| || ||||||||| ||| || u
 ucugggaag CCUUUCGG GG GGGUUGGGA Gac ugg 
-         u        A  C         -   u    

>bta-mir-299 (-42.30)   [bta-miR-299:7-28]

     a                      uc 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucuu gccaaauggcaggguguaugua  a
     c                      ua 

>bta-mir-29d (-28.80)   [bta-miR-29d:54-75]

a         -  ggc   c       ucc       ---     u 
 ucucuuaca ca   uga cgauuuc   ugguguu   cagag c
 ||||||||| ||   ||| |||||||   |||||||   ||||| u
 gggggaugu gu   AUU GCUAAAG   ACCACGA   guuuu g
a         a  ---   A       UUU       Ucu     u 

>bta-mir-301a (-31.50)   [bta-miR-301a:51-75]

a     aa  a     c    ---u          ----a       
 cugcu  cg augcu ugac    uuauugcacu     cuguac 
 |||||  || ||||| ||||    ||||||||||     ||||| u
 gacga  gu UACGA ACUG    GAUAACGUGA     gacauu 
-     aa  c     A    UUAU          Cgauc       

>bta-mir-301b (-43.00)   [bta-miR-301b:53-77]

-   --u     -  g a      c      ---g        acugu    u 
 ucc   gcugg cc c ggugcu ugacga    guugcacu     gcuu g
 |||   ||||| || | |||||| ||||||    ||||||||     ||||  
 agg   cgacc gg g cUACGA ACUGUU    UAACGUGA     Cgag a
g   uuc     a  - c      A      AUAG        -----    g 

>bta-mir-302a (-32.90)   [bta-miR-302a:46-67]

c   c    u         u           aua 
 cca cacu aaacgugga guacuugcuuu   g
 ||| |||| ||||||||| |||||||||||   c
 ggu GUGA UUUGUACCU CGUGAAugaaa   u
-   A    U         U           aaa 

>bta-mir-302d (-28.30)   [bta-miR-302d:46-66]

c  c    uu                -----c    a 
 cu uacu  aacauggaggcacuug      ugug c
 || ||||  ||||||||||||||||      ||||  
 gg gUGA  UUGUACCUUCGUGAAU      auac u
-  c    UU                aaaaaa    u 

>bta-mir-302b (-26.80)   [bta-miR-302b:49-71]

cucc    a   uu       u       u    ga u 
    cuuu acu  aacaugg aguacuu cugu  c u
    |||| |||  ||||||| ||||||| ||||  |  
    gaaG UGA  UUGUACC UCGUGAA gaua  g u
---u    A   UU       U       U    aa u 

>bta-mir-302c (-33.90)   [bta-miR-302c:43-65]

    ug  uu             c    -g  u 
ccuc  cu  aacauggggguac ugcu  ug a
||||  ||  ||||||||||||| ||||  || a
ggaG  GA  UUGUACCUUCGUG AUga  ac a
    GU  CU             A    aa  g 

>bta-mir-30f (-33.10)   [bta-miR-30f:14-37]

g     c   uacU       C   ACA         -gug a 
 agggc aga    GUAAACA CCU   CUCUCAGCU    c c
 ||||| |||    ||||||| |||   |||||||||    | a
 uuccg ucu    cauuugu gga   gagggucga    g g
-     -   cucu       c   --a         aaga u 

>bta-mir-32 (-31.40)   [bta-miR-32:6-28]

        UG      A          -  uu  c 
ggaggUAU  CACAUG CUAAGUUGCA Ug  gu a
||||||||  |||||| |||||||||| ||  ||  
cuuuuaua  guguau gauuuaacgu ac  cg c
        gu      -          g  uc  g 

>bta-mir-323 (-37.70)   [bta-miR-323:50-71]

---uu      u g        g u     gcgc  u    uua 
     gguacu g agagaggu g ccgug    gu cgcu   u
     |||||| | |||||||| | |||||    || ||||    
     cuauga c uuUCUCCA C GGCAC    CA Gcgg   u
cuaau      - g        G U     AUUA  C    uau 

>bta-mir-324 (-39.20)   [bta-miR-324:18-40]

aacu      gc     C   U C   A     U   U  aaag 
    ggcuau  cuccc GCA C CCU GGGCA UGG GU    c
    ||||||  ||||| ||| | ||| ||||| ||| ||     
    cugaug  ggggg cgu g gga cccgu acc ca    u
cagu      uu     u   c u   c     c   -  gagg 

>bta-mir-326 (-61.10)   [bta-miR-326:60-79]

cuc        g            c       uugu  a    gg   u 
   gucugucu uugggcuggagg agggccu    ga ggcg  uug g
   |||||||| |||||||||||| |||||||    || ||||  |||  
   uaggcgga gacccGACCUCC UCCCGGG    CU CCgc  gac c
acu        -            U       ---U  -    ua   u 

>bta-mir-328 (-59.40)   [bta-miR-328:61-82]

cuguuuc     cu  ag           ga     u     a a    g 
       ggagc  gg  cgggggggcag  ggggc caggg g uagu u
       |||||  ||  |||||||||||  ||||| ||||| | ||||  
       ccuug  cc  GCCUUCCCGUC  UCCCG GUCcc c gucg g
-------     uc  cU           UC     -     - -    u 

>bta-mir-329a (-36.80)   [bta-miR-329a:52-73]

g       u           uu      cuc      u   a 
 ugguacu gaggagagguu  cuaggu   uguuuc uuc u
 ||||||| |||||||||||  ||||||   |||||| |||  
 acuauga cuUUUUUCCAA  GGUCCA   ACAAag agg g
-       c           UU      --C      u   a 

>bta-mir-329b (-35.00)   [bta-miR-329b:13-35]

-      cu           UU UG   UUC      u  aa 
 ugguac  gaagAGAGGUU  C  GGU   UGUUUc uu  u
 ||||||  |||||||||||  |  |||   |||||| ||   
 acuaug  cuuuucuccaa  g  cca   acaaag ag  g
a      ac           uu gu   --c      u  ga 

>bta-mir-330 (-44.42)   [bta-miR-330:57-79]

cuuc   -  u a           --    -    u   ag    ugcaa 
    ggc ga c cugccucucug  ggcc ugug cuu  gcuc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ucg cu g gacggAGAGAC  CCGG ACAC GAA  CGag     u
---c   a  c c           GU    C    -   -A    ccaac 

>bta-mir-335 (-39.50)   [bta-miR-335:14-36]

----------uuu    c        A         C        U  gu 
             uggg gggggUCA GAGCAAUAA GAAAAAUG uu  c
             |||| |||||||| ||||||||| |||||||| ||   
             acuc ccuccagu cucguuauu cuuuuugc aa  a
acucaugucguuu    u        c         a        c  au 

>bta-mir-338 (-41.30)   [bta-miR-338:55-77]

gcacg   c      cc      u   -         -   ga  a 
     ggc guccuc  caacaa auc cuggugcug agu  ug c
     ||| ||||||  |||||| ||| ||||||||| |||  || a
     ucg cgggag  GUUGUU UAG GACUACGAC Uca  gc c
-accg   a      aA      U   U         C   ac  a 

>bta-mir-339 (-35.20)   [bta-miR-339:14-35]

ggg    c   u U C   U    C      U   uu  u 
   gcag cgc g C CUG CCUC AGGAGC CAC  gg c
   |||| ||| | | ||| |||| |||||| |||  || c
   cguc gug c g gac ggag uccucg gug  cc g
---    u   c c a   c    c      c   --  g 

>bta-mir-33a (-32.20)   [bta-miR-33a:6-26]

   c          A UU          uucu  c 
cug gGUGCAUUGU G  GCAUUGCAug    gg g
||| |||||||||| |  ||||||||||    || g
gac cuacgugaca c  uguaacgugc    cc u
   a          c uu          ----  a 

>bta-mir-33b (-58.20)   [bta-miR-33b:16-35]

---------gcggg    c   c  -          UU         g  u 
              cggc ccg gG UGCAUUGCUG  GCAUUGCau ug g
              |||| ||| || ||||||||||  ||||||||| || a
              gccg ggc cc acgugacggc  cgugacgug ac g
cgccacgguccccg    a   -  g          uc         g  g 

>bta-mir-340 (-34.70)   [bta-miR-340:58-80]

--uu     u      au       -caa      u    g     ug 
    guacc ggugug  uauaaag    ugagac gauu ucaug  u
    ||||| ||||||  |||||||    |||||| |||| |||||  c
    uaugg ccauaC  AUAUUUC    ACUCUG CUag ggugu  g
auuc     u      CG       AUUG      C    -     uu 

>bta-mir-346 (-51.10)   [bta-miR-346:20-42]

-g u      g ug    u    CU    -  AUG        U  guug 
  g cucugu u  ggcg cUGU  GCCC GC   CCUGCCUC cu    c
  | |||||| |  |||| ||||  |||| ||   |||||||| ||     
  c gagacg g  ccgu gacg  cggg cg   ggacggag ga    u
gg -      - gu    c    uu    u  --g        -  aguc 

>bta-mir-362 (-30.40)   [bta-miR-362-5p:5-28] [bta-miR-362-3p:42-62]

cuc           ACC        -A Ug     
   gAAUCCUUGGA   UAGGUGUG  G  cugu 
   |||||||||||   ||||||||  |  ||| u
   CUUAGGAACUU   AUCCACAC  c  gauc 
aaa           ---        AA gu     

>bta-mir-365-2 (-41.10)   [bta-miR-365-3p:68-89]

--a  g   u  aggaca       a        ac   c       -----    u   u 
   ga ugc cg      gcaagaa aaugaggg  uuu aggggca     gcug guu u
   || ||| ||      ||||||| ||||||||  ||| |||||||     |||| |||  
   cu acg gu      cguucuu uUAUUCCU  AAA UCCCCGU     ugac cag c
gga  -   u  ----ga       g        AA   -       AAUac    u   u 

>bta-mir-367 (-29.30)   [bta-miR-367:43-65]

                ua     cucug      u 
ccauuacuguugcuaa  ugcaa     uucaau c
||||||||||||||||  |||||     ||||||  
gguAGUGGUAACGAUU  ACGUU     AGguua a
                UC     ----A      a 

>bta-mir-370 (-33.70)   [bta-miR-370:48-69]

      agaa       ca gu   u    uua   -  c 
aggcag    gccaggu  c  cuc gcag   cac cg u
||||||    |||||||  |  ||| ||||   ||| ||  
ucuguc    UGGUCCA  G  GGG CGUC   Gug gc c
      ----       AG UG   U    --C   a  a 

>bta-mir-292 (-46.40)   [bta-miR-292:48-70]

     u  gg        cu    g         g     
cagcc gu  uacucaaa  gugg ggcacuucc uuuu 
||||| ||  ||||||||  |||| ||||||||| ||| a
guugg ca  GUGAGUUU  UACC CCGUGAAgg aagc 
     c  uU        UG    G         g     

>bta-mir-374b (-36.80)   [bta-miR-374b:22-43]

gaa  aau  ---u  u    ug AU             C       c 
   ga   cc    ac cgga  g  AUAAUACAACCUG UAAGUGu c
   ||   ||    || ||||  |  ||||||||||||| |||||||  
   cu   gg    ug gccu  u  uauuauguuggac auucacg u
cug  cuc  uauc  u    gu ac             u       a 

>bta-mir-375 (-26.20)   [bta-miR-375:39-61]

c  -    a      ccu  c     c  gac 
 cc cgcg cgagcc   cg acaaa cg   c
 || |||| ||||||   || ||||| ||    
 gg GUGC GCUCGG   GC UGUUU gc   u
c  A    -      CUU  U     U  gag 

>bta-mir-377 (-27.80)   [bta-miR-377:45-66]

uu              c   -    a    - uuu 
  gagcagagguugcc uug guga uucg c   a
  |||||||||||||| ||| |||| |||| |   u
  uuUGUUUUCAACGG AAC CACU Aagu g   u
-g              A   A    -    u uau 

>bta-mir-378 (-39.20)   [bta-miR-378:43-64]

   g  c              ugu      ccu 
agg cu cugacuccaggucc   guguua   c
||| || ||||||||||||||   ||||||    
ucC GA GACUGAGGUUCAGG   CAcgau   g
   G  A              --U      aaa 

>bta-mir-379 (-33.60)   [bta-miR-379:16-36]

u  uuc   c    a    A       GA       - uuugu 
 gg   cug agag UGGU GACUAUG  ACGUAGG c     g
 ||   ||| |||| |||| |||||||  ||||||| |      
 cc   gac ucuc auca cugguac  uguaucc g     a
a  uau   -    a    c       aa       a uuuuu 

>bta-mir-381 (-37.80)   [bta-miR-381:49-70]

      g  c   g        u        --g   u 
uacuca ag gag uugcccuu guauauuc   guu u
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   uag u
      G  U   G        -        aug   u 

>bta-mir-382 (-28.50)   [bta-miR-382:11-32]

    u       -A           UG      - uuu 
uacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuuuuuu  caacaggcacu  cuaagc g   u
    -       ca           ua      a uau 

>bta-mir-383 (-28.00)   [bta-miR-383:7-28]

   -c  A      AA    A        --    gu 
cuc  uc GAUCAG  GGUG UUGUGGCU  uugg  g
|||  || ||||||  |||| ||||||||  ||||  g
gag  ag cugguc  ucac gacaccga  aacu  a
   aa  a      cg    -        cu    au 

>bta-mir-409 (-38.30)   [bta-miR-409:15-37]

u     g  gg   A    AC         -    - AUc 
 gguac cg  gag GGUU  CCGAGCAAC UUUG C   u
 ||||| ||  ||| ||||  ||||||||| |||| |    
 cuaug gc  uuc ccaa  ggcucguug aagc g   g
a     -  uu   c    gu         u    a cag 

>bta-mir-410 (-38.10)   [bta-miR-410:50-70]

g      u     g    ug      a  a     - uuu 
 gguacu gagga aggu  ucugug ug guucg c   a
 |||||| ||||| ||||  |||||| || ||||| |   u
 ccauga cuuuU UCCG  AGACAC AU UAAgc g   u
a      -     G    GU      A  A     a uaa 

>bta-mir-411 (-30.00)   [bta-miR-411:15-36]

u      ug   a A    A      A A       - uuu 
 gguacu  gag g UAGU GACCGU U GCGUACG c   a
 ||||||  ||| | |||| |||||| | ||||||| |   u
 cuauga  cuc c auca cuggca a uguaugc g   c
a      --   c a    c      c a       a ugu 

>bta-mir-412 (-38.30)   [bta-miR-412:53-75]

----cug      a      a    c      u   aa    -    u 
       ggguac ggacgg uggu gaccag ugg  agua auug u
       |||||| |||||| |||| |||||| |||  |||| ||||  
       cccaug ccUGUC AUCA CUGGUC ACU  UCAu uaau u
gacguca      -      G    C      C   --    g    c 

>bta-mir-421 (-35.20)   [bta-miR-421:48-70]

----g    uu      -    uua            a   aaa 
     caca  guaggc cuca   aauguuuguuga uga   a
     ||||  |||||| ||||   |||||||||||| |||   a
     gugu  cgucCG GGGU   UUACAGACAACU Acu   u
cucua    cu      C    UAA            -   aag 

>bta-mir-429 (-38.00)   [bta-miR-429:52-73]

a   u cc        u -          cg       cu  u 
 gcc g  gaugggcg c uuaccagaca  guuagau  gg c
 ||| |  |||||||| | ||||||||||  |||||||  ||  
 cgg c  cuaccUGC G AAUGGUCUGU  UAAUcug  cu c
-   - cc        C U          CA       -u  u 

>bta-mir-431 (-45.40)   [bta-miR-431:20-42]

-------------uccugc -    c       U          C  U A   AGGccacacu 
                   g cguc ugcgagg GUCUUGCAGG CG C UGC          g
                   | |||| ||||||| |||||||||| || | |||           
                   c gcag acgcucu cgggacguuc gc g acg          a
gcagcucccacuacuuaua a    a       u          u  u g   uugcaaaggc 

>bta-mir-432 (-34.80)   [bta-miR-432:17-39]

gcaugacuccu     U U     UA       G     a   uu   uu 
           ccaag C UGGAG  GGUCAUU GGUGG ucc  uau  c
           ||||| | |||||  ||||||| ||||| |||  |||   
           gguuc g accuc  ucgguag ucacc ggg  gua  c
---------gc     u u     -c       g     -   -u   uc 

>bta-mir-433 (-45.60)   [bta-miR-433:67-88]

------------------------uggccgg      gua   u          uuguucagagaggcuagau 
                               ggagaa   cgg gagccuguca                   c
                               ||||||   ||| ||||||||||                    
                               ccucuU   GCU CUCGGGUAGU                   c
cccgacggaaguaccacaccacggcgaugga      GUG   C          ACUAggaagaguuguuccu 

>bta-mir-448 (-57.00)   [bta-miR-448:72-93]

----------gc        u a            g   u     ga       a   ua 
            ggggaggu g acauccugcaua ugc gccag  aaucccu uuu  u
            |||||||| | |||||||||||| ||| |||||  ||||||| |||   
            ccccucUA C UGUAGGAUGUAU ACG Ugguc  uuggggg gaa  a
cuacuacaccca        C C            -   U     gg       g   uc 

>bta-mir-449a (-36.90)   [bta-miR-449a:13-34]

----u   ug     u       -    U          u a  au 
     gug  auggg UGGCAGU GUAU GUUAGCUGGU g au  g
     |||  ||||| ||||||| |||| |||||||||| | ||   
     uac  uauuc aucguca cgua caaucgacua c ug  u
auaug   gu     u       a    -          c g  ag 

>bta-mir-449b (-34.50)   [bta-miR-449b:16-37]

---------uga  u   u     A     U   UU   A C        uu gg 
            cc gaa caggu GGCAG GUA  GUU G UGGCugcu  g  u
            || ||| ||||| ||||| |||  ||| | ||||||||  |   
            gg cuu guuca ccguc cgu  caa c accgacga  u  c
ucuucuuaaaua  u   c     -     c   --   - -        cu aa 

>bta-mir-449c (-42.50)   [bta-miR-449c:23-43]

aug   --cu        u    uA  C      UCU     U           u 
   aag    ugaaugug cagg  GG AGUGCA   CUAGC GGcuguuaaaa u
   |||    |||||||| ||||  || ||||||   ||||| ||||||||||| u
   uuc    acuuacgu gucu  cc ucacgu   gaucg uugacaauuuu c
-cg   uaau        u    cc  -      --u     -           u 

>bta-mir-451 (-46.10)   [bta-miR-451:16-38]

c     - ug     gA                GA 
 uuggg g  gcgag  AACCGUUACCAUUACU  G
 ||||| |  |||||  ||||||||||||||||   
 gaccc c  cguuc  uuggcaaugguaauga  U
a     a gu     uc                UU 

>bta-mir-452 (-36.80)   [bta-miR-452:17-38]

  u          aac G        G  A       Cu ug 
gc aagcacuuac   U UUUGCAGA GA ACUGAGA  u  u
|| ||||||||||   | |||||||| || |||||||  |  a
cg uucgugaaug   a aaacgucu cu ugacucu  a  a
  u          --a g        a  c       au uc 

>bta-mir-453 (-31.70)   [bta-miR-453:44-66]

---------------     aa      ca     a  g    a  g 
               gcggg  cgccac  gcagc cu ccuc cg u
               |||||  ||||||  ||||| || |||| || a
               CGCUU  GUGGUG  UGUUG GA ggag gu c
cguaguaauuuauuA     GA      CC     -  g    -  u 

>bta-mir-454 (-42.40)   [bta-miR-454:63-85]

--------c     auua     uc            ---         ----   --u     g 
         uguuu    ccaga  cuagaacccuau   cgauauugu    cuc   gcugu u
         |||||    |||||  ||||||||||||   |||||||||    |||   |||||  
         acaag    gguuu  gguuuUGGGAUA   GUUAUAACG    gag   cgaua a
guacgggua     -aag     gu            UUC         UGAU   ucu     a 

>bta-mir-483 (-36.60)   [bta-miR-483:43-63]

-             a  a     g c ug u  g 
 ggggagggcggga ga aggag g g  g cu u
 ||||||||||||| || ||||| | |  | ||  
 ccucUUCUGCCCU CU UCCUC C c  c ga g
u             C  C     A U cu -  c 

>bta-mir-485 (-34.50)   [bta-miR-485:9-31]

   u         CU       -    A    auuc 
acu gaagAGAGG  GGCCGUG AUGA UUCG    a
||| |||||||||  ||||||| |||| ||||    u
uga uuucucucc  ucggcac uacu gagc    c
   u         uc       a    -    gaaa 

>bta-mir-486 (-75.40)   [bta-miR-486:32-53]

g  a    --  a  u  gu  u        g    U           C     ----   c uu 
 cc gcuu  gg cc gc  cc cccugacg gUCC GUACUGAGCUG CCCGA    Ggc c  c
 || ||||  || || ||  || |||||||| |||| ||||||||||| |||||    ||| |   
 gg cgaa  cc gg ug  gg ggggcugc cggg caugacucgac gggcu    ccg g  g
-  a    gg  -  c  ag  u        g    c           u     cgac   u uc 

>bta-mir-488 (-31.20)   [bta-miR-488:52-72]

-------------    a  a   cu  c   u      a  c        g u 
             gaga uc ucu  cc aga aauggc cu ucaaacag u u
             |||| || |||  || ||| |||||| || |||||||| | c
             cucu ag aga  GG UCU UUGUCG GA AGUUuguu g c
aggucuuccuuaa    c  a   CU  U   -      -  A        g a 

>bta-mir-490 (-49.30)   [bta-miR-490:75-96]

-u    -ac      g    -   aguucauu        c      --         g   cac   u 
  ggag   uugcug uuug gaa        guucgaca caugga  ucuccaggu ggu   guu a
  ||||   |||||| |||| |||        |||||||| ||||||  ||||||||| |||   |||  
  cuuc   ggcgac gaac cuu        cgaguuGU GUACCU  GGAGGUCCA Cca   uag g
au    aca      -    a   ------gu        C      CA         A   -ca   a 

>bta-mir-491 (-43.60)   [bta-miR-491:16-37]

 ug      cu      U      CC   C          a 
u  acuuag  ggguAG GGGGAA  CUU CAUGAGGagu g
|  ||||||  |||||| ||||||  ||| |||||||||| a
g  uggguc  uccauc ucccuu  gaa guauuccuca a
 gu      ag      u      -a   c          c 

>bta-mir-493 (-50.40)   [bta-miR-493:57-78]

     ccc        u                    cauuc  u 
cuggc   cagggccu guacaugguaggcuuucauu     gu u
|||||   |||||||| ||||||||||||||||||||     ||  
gaccg   gucccGGA CGUGUGUCAUCUGGAAGUgg     ca g
     --u        C                    -cuua  c 

>bta-mir-494 (-36.00)   [bta-miR-494:50-71]

uc      u            a       -   c   -  uuu 
  gauacu gaaggagagguu uccgugu ugu uuc uc   a
  |||||| |||||||||||| ||||||| ||| ||| ||   u
  cuauga uuuuuuCUCCAA GGGCACA ACA AAG ag   u
aa      -            A       U   -   U  uau 

>bta-mir-495 (-40.80)   [bta-miR-495:49-70]

u      u          u  -       cu     - uga 
 ggugcc ggaaagaagu gc ccauguu  uuucg c   u
 |||||| |||||||||| || |||||||  ||||| |    
 cuacgg cuuUUCUUCA CG GGUACAA  AAAgc g   a
a      c          -  U       AC     a ugu 

>bta-mir-496 (-38.30)   [bta-miR-496:56-77]

------cc    cgg      c   u        u     gu         uua 
        gagu   gguacu gaa ggagguug ccaug  guguucauu   u
        ||||   |||||| ||| |||||||| |||||  |||||||||    
        cuua   ucauga cuu cCUCUAAC GGUAC  UAUGAGUag   u
ggguacuu    -aa      -   u        C     AU         uau 

>bta-mir-500 (-45.80)   [bta-miR-500:13-35]

      c     -U         UAC UG    AGAg   uuu 
gcuccc cucuc  AAUCCUUGC   C  GGUG    ugc   c
|||||| |||||  |||||||||   |  ||||    |||   u
cgaggg gagag  uuaggaacg   g  ccac    acg   g
      a     uc         --- gu    -gua   uaa 

>bta-mir-502a-1 (-55.00)   [bta-miR-502a:51-72]

u        -    -           ucu      uag   -  u 
 gcccaccc cucu aauccuugcuc   gggugc   ugc ug c
 |||||||| |||| |||||||||||   ||||||   ||| ||  
 cggguggg gagA UUAGGAACGGG   UCCACG   Acg ac u
u        a    C           ---      -UA   u  c 

>bta-mir-502a-2 (-31.20)   [bta-miR-502a:58-79]

cugcucugu  cc    aucc      aa       a    -g        
         uc  cugu    aaucuu  ugcccag ugca  guacugu 
         ||  ||||    ||||||  ||||||| ||||  |||||| c
         ag  gacA    UUAGGA  ACGGGUC ACGU  cgugacu 
-----gaau  aa    ---C      --       C    AA        

>bta-mir-502b (-32.90)   [bta-miR-502b:50-70]

    c - uc  -u         ucc       a  g   uuu 
gcuc c c  uc  aauucuugc   ccaggug ga ugc   g
|||| | |  ||  |||||||||   ||||||| || |||   u
cgag g g  ag  UUAGGAACG   GGUCCAC CU Acg   g
    a u ua  uC         ---       -  A   uaa 

>bta-mir-504 (-49.20)   [bta-miR-504:13-34]

   -g    -            G     A    -G  u   u 
gcu  cugu ugggAGACCCUG UCUGC CUCU  UC gua g
|||  |||| |||||||||||| ||||| ||||  || |||  
cgg  gaca acccuuugggac ggacg gagg  ag cau c
   ga    u            g     c    ga  u   u 

>bta-mir-505 (-46.30)   [bta-miR-505:56-77]

aaau      ac    u           g    a        ucua 
    ugaugc  ccag gggggagccag aagu uugauguu    c
    ||||||  |||| ||||||||||| |||| ||||||||    c
    acugcg  gguc cUCCUUUGGUC UUCA AACUGCga    a
----      -a    u           G    C        uuug 

>bta-mir-539 (-28.60)   [bta-miR-539:9-30]

       aG        A      G    -    -   u 
auacuug  GAGAAAUU UCCUUG UGUG Uucg cuu a
|||||||  |||||||| |||||| |||| |||| ||| u
uaugagu  uucuuuaa aggaac auac aagu ggg u
       cu        c      -    u    a   u 

>bta-mir-541 (-31.20)   [bta-miR-541:54-75]

-   -u     aaa        c    g uc    u   aaguu 
 acg  caggg   ggauucug uguc g  ccac cca     c
 |||  |||||   |||||||| |||| |  |||| |||      
 ugu  gucUC   CCUAAGAC ACGG U  GGUg ggu     a
g   uc     CGG        -    G --    -   aaaaa 

>bta-mir-543 (-30.10)   [bta-miR-543:49-70]

      u          u  -     ucuu     - uuu 
ggugcu aaggagaagu gc ccgug    uuucg c   a
|||||| |||||||||| || |||||    ||||| |   u
cuauga uuuUUCUUCA CG GGCGC    AAAgc g   a
      c          -  U     UUAC     a ugu 

>bta-mir-544b-1 (-38.10)   [bta-miR-544b:50-71]

------u       au         -         -     cu  a 
       caccugg  agcuuguua aaaugcaga uucca  uc g
       |||||||  ||||||||| ||||||||| |||||  ||  
       guggacc  UUGAACAAU UUUACGUCU Agggu  gg u
aagcguu       -C         C         U     cc  g 

>bta-mir-544b-2 (-38.30)   [bta-miR-544b:56-77]

------            u       --    -   u   --     g  a 
      aucaccugggga cuuguua  aaug aga ucu  gguuc gu g
      |||||||||||| |||||||  |||| ||| |||  ||||| ||  
      uaguggacuCUU GAACAAU  UUAC UCU Aga  ccggg ua g
ucaccg            -       CU    G   U   gu     g  a 

>bta-mir-544a (-35.30)   [bta-miR-544a:55-76]

auuuu      cua    u           -     u   -ga  c 
     caucac   ggga cuuguuaaaag gcaga ucu   uu a
     ||||||   |||| ||||||||||| ||||| |||   ||  
     guagug   ccCU GAACGAUUUUU CGUCU Aga   ag g
uaauc      -aa    U           A     U   acc  g 

>bta-mir-551a (-31.70)   [bta-miR-551a:60-80]

-----    a c   -  cu    cugaaacccagagcaggugaggccug 
     gggg c acc ug  gacc                          u
     |||| | ||| ||  ||||                           
     uccc g ugg AC  UUGG                          c
aaagg    - u   u  CU    UUCUAACCCAGCGggucuuugucagu 

>bta-mir-551b (-42.80)   [bta-miR-551b:60-81]

agagaa      c      aa         cg     - -aga    gug 
      guucuc uggccu  gaaaucaag  ugggu g    ccug   c
      |||||| ||||||  |||||||||  ||||| |    ||||    
      uaagag gucgga  CUUUGGUUC  ACCCA C    ggac   a
-----a      u      GA         AU     G GGaa    aag 

>bta-mir-562 (-21.40)   [bta-miR-562:63-82]

aguggaaaugcugguucauauggcaauucuaccuuuuaugag   cu   a        u 
                                          gaa  gua ggcuguuu c
                                          |||  ||| ||||||||  
                                          UUU  CAU UCGACGAA c
----------------------------------------CA   AC   G        A 

>bta-mir-568 (-31.10)   [bta-miR-568:15-34]

---        -     u        A         ACuucc         c 
   auauacac uauau AUGUAUAA UGUAUACAC      uauauauau c
   |||||||| ||||| |||||||| |||||||||      |||||||||  
   uaugugug auaug uacauauu auauaugug      auauauaua a
gua        g     -        -         ------         u 

>bta-mir-582 (-36.94)   [bta-miR-582:16-38]

----------auc   u        UUA            CA     Uaaucu 
             ugu cucuuugg   CAGUUGUUCAAC  GUUAC      a
             ||| ||||||||   ||||||||||||  |||||       
             acg gggaaacc   gucaacaaguug  caaug      c
uuacaaaagugaa   u        caa            ac     uuaauc 

>bta-mir-584-2 (-38.90)   [bta-miR-584:20-38]

uaggguguccaagcccug           G     GAGgaguuucuca 
                  cUGGUUUGCCU GGACU             g
                  ||||||||||| |||||              
                  gaccaaacggg cuuga             g
---------gucgagugg           a     aaggaccgaaauc 

>bta-mir-584-3 (-24.20)   [bta-miR-584:19-37]

uagggugacca   a   U    UGCC   G       aa   c ug 
           acu ucc GGUU    UGG ACUGAGa  uuu c  g
           ||| ||| ||||    ||| |||||||  ||| |   
           uga agg ccga    auc ugacuuu  aga g  g
----------c   c   u    -uau   a       cg   c ua 

>bta-mir-584-4 (-24.30)   [bta-miR-584:12-30]

gaccau   -  UG     CCU  G    A u   uu - ug 
      ccu cc  GUUUG   GG ACUG G ggu  c c  g
      ||| ||  |||||   || |||| | |||  | |  g
      gga gg  caaau   uc ugac c uca  g g  u
-----u   c  gu     ---  g    - u   gg u uc 

>bta-mir-584-5 (-48.80)   [bta-miR-584:19-37]

--a       -       uc UG        -      GA g -   ac 
   gggauga ccaacug  c  GUUUGCCU GGGACU  G g guu  u
   ||||||| |||||||  |  |||||||| ||||||  | | |||   
   ucuuacu gguuggu  g  caaacggg cccuga  u c cag  g
cga       u       ga gu        u      ag g a   ga 

>bta-mir-584-6 (-24.50)   [bta-miR-584:19-37]

uuggaugaccaaucaucuUGGUU       GA  GA  g uu    ug 
                       UGCCUGG  CU  Gg g  uccc  g
                       |||||||  ||  || |  ||||  a
                       acggacc  ga  uu u  aggg  u
---------------------gu       --  ag  g gu    ug 

>bta-mir-584-7 (-21.70)   [bta-miR-584:18-36]

agggugaccaacu       UUUG    G A  G   g 
             gucuUGG    CCUG G CU AGg u
             |||||||    |||| | || |||  
             caggauu    gggu u gg ucc u
-----------au       ugua    g a  g   u 

>bta-mir-584-1 (-24.80)   [bta-miR-584:19-37]

ucgggugaucaaccguca       CCU  G    A     uu    g 
                  UGGUUUG   GG ACUG Ggggu  cuug a
                  |||||||   || |||| |||||  |||| a
                  accgaac   uc ugac cuucg  gaac u
-----------------g       ---  g    -     --    g 

>bta-mir-592 (-39.50)   [bta-miR-592:15-37]

---------ua     c     cA        A    C       -     g 
           uuaug cauga  UUGUGUCA UAUG GAUGAUG Ugugu a
           ||||| |||||  |||||||| |||| ||||||| |||||  
           aaugc guacu  aacgcagu gugc cuacugc acacg u
caacacugcag     a     ac        g    a       g     g 

>bta-mir-599 (-39.80)   [bta-miR-599:61-80]

aaagacgugcu      -a   u                 gg     -   c 
           guccac  gug guuugauaagcugacau  gacag gga u
           ||||||  ||| |||||||||||||||||  ||||| ||| c
           uaggug  uac CAAACUAUUUGACUGUG  UUGuc cuu u
--------cag      ca   c                 --     a   u 

>bta-mir-615 (-61.70)   [bta-miR-615:18-39]

cuc   ag   c          UC     U        Cu    g ug 
   ggg  ggg gggagGGGGG  CCCGG GCUCGGAU  cgag g  c
   |||  ||| ||||||||||  ||||| ||||||||  |||| |  u
   ccc  ccc cccucucccu  ggguc cgagccug  gcuu u  u
--c   ca   -          cu     -        --    g ua 

>bta-mir-628 (-36.40)   [bta-miR-628:23-44]

auagcugu  u   a      cA  -   A   A             aaaa 
        ug guc cuuccu  UG CUG CAU UUUACUAGAGGgu    u
        || ||| ||||||  || ||| ||| |||||||||||||     
        ac cgg gaaggg  gc gac gug gaaugaucuucca    u
-------u  u   -      aa  u   g   a             auaa 

>bta-mir-631 (-35.30)   [bta-miR-631:14-34]

       -cca   AGA          -ACC      u 
ggggagc    guu   CCUGGCUUAG    UCAGCu c
|||||||    |||   ||||||||||    |||||| a
ccucucg    cgg   ggacugaguc    agucga c
       aaac   --g          agau      a 

>bta-mir-653 (-40.12)   [bta-miR-653:12-32]

-------       cu              U    GU     caugu 
       ucauucc  caGUGUUGAAACAA CUCU  UGaac     u
       |||||||  |||||||||||||| ||||  |||||     a
       aguaagg  guuacaacuuuguu gagg  acuug     c
guagaau       ag              u    uc     aagga 

>bta-mir-654 (-37.00)   [bta-miR-654:51-72]

     agugg           gcu     a      - uuc 
ggguu     aaagguggugg   gcaga caugug c   c
|||||     |||||||||||   ||||| |||||| |   u
cccga     uUUCCACUACC   CGUCU GUAUac g   u
     --aga           AGU     -      u ugc 

>bta-mir-655 (-38.80)   [bta-miR-655:61-82]

aacu   cagg      ug           u      ua      cu   c 
    guu    gauauu  aggagagguua ccgugu  uguucg  ugg u
    |||    ||||||  ||||||||||| ||||||  ||||||  |||  
    cag    cuauaa  uUCUCUCCAAU GGUACA  AUAagu  acu c
--cu   ---a      gu           U      UA      --   a 

>bta-mir-656 (-23.60)   [bta-miR-656:44-64]

----------cu    u      c     ag       ---   u 
            gaaa agguug cugug  guguuca   cuu u
            |||| |||||| |||||  |||||||   |||  
            cuuU UCCAAC GACAU  UAUAAgu   gaa c
cuaagcuauagc    C      U     AU       agc   u 

>bta-mir-658 (-40.20)   [bta-miR-658:61-85]

cccgguugc    g   c   -  --   -     cagcuuguccgcugacagc 
         cgug uug agg cc  cgg cccgc                   g
         |||| ||| ||| ||  ||| |||||                    
         gcac gac ucc GG  GCC GGGCG                   a
------gga    g   u   U  UU   U     AAGGGAGGCGGgauuaccg 

>bta-mir-665 (-41.30)   [bta-miR-665:43-62]

-  u   -                -   cc  g  c 
 uc ccu ugaggggucuuggccu cug  ca ga u
 || ||| |||||||||||||||| |||  || || c
 gg gga acUCCCCGGAGCCGGA GAC  gu cu u
c  c   c                U   CA  a  u 

>bta-mir-670 (-41.10)   [bta-miR-670:22-42]

g  u      u   u      UC       --     U  -U AA    aa 
 gu uagggg gga cugacg  CCUGAGU  AUAUG GG  G  ccgg  u
 || |||||| ||| ||||||  |||||||  ||||| ||  |  ||||  u
 cg gucccu cuu gacugu  ggacuua  uauac cc  u  gguc  u
-  c      -   -      ga       cu     u  uu gg    cg 

>bta-mir-671 (-74.20)   [bta-miR-671:29-51]

gc     -a      ----a    a        A   A      GA           -u   g 
  cgccg  ccuggc     ggcc ggaagagg GGA GCCCUG  GGGGCUGGAGg  gau g
  |||||  ||||||     |||| |||||||| ||| ||||||  |||||||||||  |||  
  guggu  ggaccg     ccgg ccuuuucc ccu cgggac  ucuuggccucc  uug a
-c     cg      aggug    g        a   -      --           uu   u 

>bta-mir-708 (-49.40)   [bta-miR-708:27-49]

cugugugugaagu   aa        A           A     C  G ------g    a 
             ggu  cugcccuc AGGAGCUUACA UCUAG UG G       guaa c
             |||  |||||||| ||||||||||| ||||| || |       |||| g
             cca  gacgggag ucuucgagugu agauc ac c       cguu a
----------auu   gg        a           c     u  g aaguaca    c 

>bta-mir-744 (-41.66)   [bta-miR-744:13-34]

 gu    cg    GC    C   -   U       --g  -ucacuga   u 
g  uggg  gggU  GGGG UAG GGC AACAGCA   gc        cgg u
|  ||||  ||||  |||| ||| ||| |||||||   ||        |||  
c  gcuc  ucca  cucc auc ccg uugucgu   cg        gcc u
 ug    au    -a    a   a   -       aca  caccaaag   c 

>bta-mir-758 (-28.80)   [bta-miR-758:52-73]

-gcc       a    --a    u      aga   c   - uuu 
    uggguac ugag   uggu gaccag   gca acg c   a
    ||||||| ||||   |||| ||||||   ||| ||| |   u
    aucuaug acuc   AUCA CUGGUC   UGU Ugc g   u
ccua       -    CCA    C      CAG   U   c ugu 

>bta-mir-759 (-28.10)   [bta-miR-759:30-51]

ggauuau             cc     u G   AC        A   U  Cu 
       aauaaauuaaaug  uaaac g CAG  UGCAAACA UUU GA  u
       |||||||||||||  ||||| | |||  |||||||| ||| ||   
       uuguuuaauuuac  auuug c guc  acguuugu aaa cu  a
-------             aa     u g   --        -   u  ag 

>bta-mir-760 (-54.30)   [bta-miR-760:31-52]

ggaggaugcugcagcg    gc  --g    c    U   UCCA        C    acc 
                uggg  gc   ucgc CCCC CAG    CCAGAGCC Ggau   u
                ||||  ||   |||| |||| |||    |||||||| ||||   u
                accc  cg   agcg gggg guc    ggucucgg cuua   a
-gccguuuuaccucaa    aa  uaa    a    u   --ug        -    aag 

>bta-mir-761 (-46.40)   [bta-miR-761:15-36]

-uggcaaga                      G  A  g 
         ggaggaGCAGCAGGGUGAAACU AC CA u
         |||||||||||||||||||||| || ||  
         ccuccucgucguuucacuuuga ug gu u
acucuuaga                      g  -  c 

>bta-mir-763 (-55.70)   [bta-miR-763:38-59]

      gga   -gc           ga         a CA         AAC   U      
aaugau   ggu   aggcauuuccu  ggauuaaug C  GCUGGGAGG   CAG GGCcc 
||||||   |||   |||||||||||  ||||||||| |  |||||||||   ||| |||| u
uugcug   ucg   ucuguaaagga  cuuaauuac g  cgacccucc   guc ucggu 
      gag   uuu           gc         c ac         ---   -      

>bta-mir-767 (-43.90)   [bta-miR-767:24-46]

---uuu   uuaua            U C       UU  C      U    c 
      gua     gguuuuugcuca G ACCAUGG  GU UGAGCA Gcag a
      |||     |||||||||||| | |||||||  || |||||| |||| u
      cgu     ccaaggacgagu c ugguacc  ca acucgu uguu g
gucauu   cacug            c u       -c  u      c    c 

>bta-mir-769 (-59.60)   [bta-miR-769:31-52]

gacuuggugcugauucccggcgcu    c          C   U   G     u  ug 
                        cuga cUGAGACCUC GGG UCU AGCUg ga  u
                        |||| |||||||||| ||| ||| ||||| ||  u
                        gacu ggcucugggg cuc agg ucgac cu  g
cgagucuugggucuccagggcugg    u          u   u   g     c  uc 

>bta-mir-873 (-30.50)   [bta-miR-873:11-31]

--   u ca   G A      UG G        a  ga 
  gug g  uuu C GGAACU  U AGUCUCCU uu  a
  ||| |  ||| | ||||||  | |||||||| ||  c
  cac c  aag g ccuuga  a ucggagga aa  a
aa   c ac   g c      gu g        c  gu 

>bta-mir-874 (-37.10)   [bta-miR-874:45-66]

--      cug   c   a  ca        a ag  a 
  uuagcc   cgg ccc cg  ccagggua g  ag c
  ||||||   ||| ||| ||  |||||||| |  || u
  ggucgg   GCC GGG GC  GGUCCCGU C  uc c
cg      ucA   A   A  CC        - cu  a 

>bta-mir-875 (-35.70)   [bta-miR-875:11-32]

--      gg  UAU        U  A       uuau 
  uuagug  ac   ACCUCAGU UU UCAGGUG    u
  ||||||  ||   |||||||| || |||||||    u
  agucac  ug   uggaguca aa gguccac    a
ca      uu  ugu        u  a       uaaa 

>bta-mir-876 (-42.70)   [bta-miR-876:11-32]

u    ug         U                aucuaa  u 
 gaag  cugUGGAUU CUUUGUGAAUCACCAu      gc a
 ||||  ||||||||| ||||||||||||||||      ||  
 cuuc  gauacuuaa gaaacauuugguggug      ug a
a    gu         u                -----g  u 

>bta-mir-877 (-41.30)   [bta-miR-877:11-30]

gcucgagaa  UA      AU  C C          ggcuaagac      c  c 
         gG  GAGGAG  GG G AGGGgacacg         uggggg uc c
         ||  ||||||  || | ||||||||||         |||||| ||  
         cc  cuccuc  cc c ucuccugugu         accccc ag g
gcaugugga  --      --  u u          ------aca      c  g 

>bta-mir-885 (-49.40)   [bta-miR-885:11-32]

--   c     c           A  -         cu 
  ccg gcucu UCCAUUACACU CC CUGCCUCUu  c
  ||| ||||| ||||||||||| || |||||||||   
  ggc cgaga aggugaugugg gg gacggagag  c
ug   a     u           -  c         ca 

>bta-mir-92a (-36.20)   [bta-miR-92a:48-69]

---cu   uac            c   u           uu 
     uuc   acagguugggau ggu gcaaugcugug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 

>bta-mir-92b (-64.12)   [bta-miR-92b:61-82]

c     cc   c    g     ga       c            uucuu 
 gggcc  ggg gggc ggagg  cgggacg ggugcaguguug     u
 |||||  ||| |||| |||||  ||||||| ||||||||||||     c
 cccgg  ucc cccg CCUCC  GCCCUGC UCACGUUAUaac     c
-     -c   -    g     -G       -            cgucc 

>bta-mir-935 (-61.40)   [bta-miR-935:56-78]

         gcg      a             ccc  c   caucc 
ggcgggggc   ggcggc guggcgggagcgg   cu ggc     u
|||||||||   |||||| |||||||||||||   || |||      
ucgcccucg   ccgcCG CAUCGCCUUCGCC   GA Ccg     c
         ---      C             AUU  C   ucugc 

>bta-mir-940 (-50.70)   [bta-miR-940:60-80]

g      gugggc       ca         -  ug g aac   gugug 
 uggggu      ugggccc  ggagugggg cc  g c   ccu     u
 ||||||      |||||||  ||||||||| ||  | |   |||      
 acccca      guccggg  CCUCGCCCC GG  C G   gga     u
-      ------       CG         C  GU G -AA   aggag 

>bta-mir-95 (-39.60)   [bta-miR-95:49-70]

aa     --c   c            uu         g  a 
  cacag   ggg gcucaauaaaug  uguugaauu ag u
  |||||   ||| ||||||||||||  ||||||||| || g
  guguc   ccc CGAGUUAUUUAU  GCAACUUaa uc c
--     uca   A            GG         a  g 

>bta-mir-96 (-45.10)   [bta-miR-96:24-46]

ccacuac    -     gg  g cU        A      UU      ---   uc 
       cguc ugcuu  cc a  UUGGCACU GCACAU  UUGCUu   gug  u
       |||| |||||  || |  |||||||| ||||||  ||||||   |||   
       guag acgaa  gg u  aaccguga cgugua  aacgag   cgc  c
------c    g     aa  g au        -      cu      ucu   cu 

>bta-mir-9-1 (-41.10)   [bta-miR-9:16-37] [bta-miR-9*:55-71]

g    cc       -  C               G     gu  ca 
 gagg  cguuucu cU UUUGGUUAUCUAGCU UAUGa  gc  c
 ||||  ||||||| || ||||||||||||||| |||||  ||   
 cucu  guaaaga ga aaGCCAAUAGAUCGA AUAcu  cg  a
a    ca       u  -               A     gc  ag 

>bta-mir-9-2 (-40.10)   [bta-miR-9:16-37] [bta-miR-9*:53-69]

g    c     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGag  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aau  aaGCCAAUAGAUCGA AUAcuu  g u
a    -     a   ga               A      cu g 

>mmu-mir-1927 (-35.59)   [mmu-miR-1927:66-88]

gua   --uuaccau        aggu    a       aaa      uug  a  ggc 
   ugu         gugcaugu    ucag ucccuag   ccagag   ca gu   u
   |||         ||||||||    |||| |||||||   ||||||   || ||    
   aca         uacguaca    AGUC AGGGAUU   GGUCUC   Gu ca   g
--a   ucucucucc        ----    -       GUA      -CA  -  agu 

>mmu-mir-1928 (-24.90)   [mmu-miR-1928:43-59]

--a  a       uu c   u     gca    cu 
   gg uagagcu  g gca uguag   agug  c
   || |||||||  | ||| |||||   ||||   
   cc auCUCGA  C CGU ACAUC   ucac  u
acc  a       -- -   U     GAg    ca 

>mmu-mir-1929 (-42.10)   [mmu-miR-1929:17-39]

        g g     U      A      A    A   gu ug a 
uuagaacu g agguc UCUAGG CUUUAU GAGC GAG  u  c g
|||||||| | ||||| |||||| |||||| |||| |||  |  | c
agucuugg u uccgg ggaucc gaggua cucg cuc  a  g c
        g -     u      a      -    a   ac gu u 

>mmu-mir-1930 (-38.90)   [mmu-miR-1930:13-34]

--   cc         CU        C     G    cuu a 
  aug  cacggucAC  CCAUAGUA CUGCA CGUg   g c
  |||  |||||||||  |||||||| ||||| ||||   | u
  ugc  gugucggug  ggugucau gacgu guau   c u
cg   uu         uc        u     g    -cu u 

>mmu-mir-1931 (-40.70)   [mmu-miR-1931:95-116]

--       u -    g  agaa     aacuc      u  u   - --g      -a      
  agccauc c cuag cc    gcauu     uuugaa gc gcu c   ucaaag  ucugu 
  ||||||| | |||| ||    |||||     |||||| || ||| |   ||||||  |||| u
  uCGGUAG G GGUC GG    CGUAa     aaauuu cg cga g   aguuuc  agacg 
ac       C U    G  --AA     ccuua      -  u   a uua      cg      

>mmu-mir-1932 (-39.50)   [mmu-miR-1932:53-74]

--  -a  c   c  u  a       c  ga    c      cauu 
  gc  gg agc gg cc gccuggc cu  gucu cgaccc    a
  ||  || ||| || || ||||||| ||  |||| ||||||    a
  cg  cc ucg cc GG UGGAUCG GA  CAGG GUUGgg    c
aa  ac  c   u  c  C       C  --    C      cucu 

>mmu-mir-1933 (-32.60)   [mmu-miR-1933-5p:13-36] [mmu-miR-1933-3p:55-76]

--   ug    cac       G  UUC      A   Ugu   ca 
  ucc  aucc   AGUCAUG UG   GGUCUU GUU   gac  g
  |||  ||||   ||||||| ||   |||||| |||   |||  u
  agg  uagg   UCAGUGU AC   CCAGGA Caa   uug  u
uc   gu    uUA       G  -UA      C   --u   au 

>mmu-mir-1934 (-45.20)   [mmu-miR-1934:13-35]

--       u    U UG     -   CU         gucca 
  cugggcc ucuu C  GUCCC CUG  UCGUCCUCU     g
  ||||||| |||| |  ||||| |||  |||||||||      
  gacucgg agag g  cgggg ggc  aguaggaga     a
gc       u    u gu     u   --         auugu 

>mmu-mir-1935 (-30.60)   [mmu-miR-1935:8-29]

--      g    AG        GGAU   Ug 
  acucug AGGC  AGGCUGGC    CUC  a
  |||||| ||||  ||||||||    |||  g
  ugagac ucug  uccgaccg    gag  u
ag      a    -g        ----   cu 

>mmu-mir-1936 (-44.40)   [mmu-miR-1936:56-78]

--       g aggg         ca     -   a -u     -cu  g 
  agggggu a    gaggccagu  cacag agg c  uuagu   ga a
  ||||||| |    |||||||||  ||||| ||| |  |||||   ||  
  uccccca u    cucCGGUCA  GUGUC UCC G  AAUca   uu a
ag       g ---a         -A     G   A UC     aag  a 

>mmu-mir-1937a (-47.80)   [mmu-miR-1937a:25-43]

--      g -    -       u   aA     -   --------C   C C   a  gua  a 
  uucuug g guuc ugggugc ccc  AUCCC GGA         GAG C CCA au   gg c
  |||||| | |||| ||||||| |||  ||||| |||         ||| | ||| ||   ||  
  aagaac c caag acccacg ggg  uaggg ccu         cuc g ggu ua   cc c
cu      g a    c       u   -a     a   aaucucacc   a c   a  acc  c 

>mmu-mir-1938 (-54.00)   [mmu-miR-1938:9-30]

-- ug     C       C             ------uu    --u     gc 
  c  gggcg GGUGGGA UUGUAGUUCGGUC        cgcu   cggac  c
  |  ||||| ||||||| |||||||||||||        ||||   |||||   
  g  cccgu cuacccu gacgucaagucgg        gcga   gucug  c
ag gu     a       u             cauggugc    uac     aa 

>mmu-mir-1939 (-34.40)   [mmu-miR-1939:22-41]

--        aag    a  --     -  ----    CU    A    C 
  aucaaguc   gggg cc  ccuUC GA    UUCC  GCCA UGCA u
  ||||||||   |||| ||  ||||| ||    ||||  |||| |||| a
  ugguucag   cucc gg  ggaag cu    aagg  uggu augu a
ua        --a    -  aa     u  cuaa    uc    a    a 

>mmu-mir-1940 (-42.00)   [mmu-miR-1940:20-46]

-a   a  aug      ---   -A      A  G  AA      --     U ug 
  gcc gg   cagccu   gcu  UGGAGG CU AG  GGUGGA  GCAGU c  u
  ||| ||   ||||||   |||  |||||| || ||  ||||||  ||||| |   
  cgg cc   gucggg   uga  accucc ga uu  uuaccu  cgucg g  a
ac   -  --g      aaa   ca      a  a  gg      uc     u cc 

>mmu-mir-1941 (-43.90)   [mmu-miR-1941-5p:13-36] [mmu-miR-1941-3p:50-70]

--   ca      gA           G  C   G    gggg 
  cag  gggugg  GGGAGAUGCUG UA AGA GCUU    u
  |||  ||||||  ||||||||||| || ||| ||||     
  guc  cccacc  CCCUCUAUGAC AU UCU Cggg    u
gg   ca      UA           G  -   A    aguu 

>mmu-mir-1942 (-27.90)   [mmu-miR-1942:33-53]

--g        u   ua   uu        aa 
   aagaggcc auu  aug  agacaucu  c
   |||||||| |||  |||  ||||||||   
   uucuccgG UGG  UAC  UCUGUAGA  c
aug        U   UC   -U        CU 

>mmu-mir-1943 (-52.30)   [mmu-miR-1943:8-30]

--                U    G      GAc   cu 
  ggcugggAAGGGAGGA CUGG CACCUG   cag  c
  |||||||||||||||| |||| ||||||   |||  c
  cugacccuucccuccu gacc guggac   guc  u
ca                c    -      ---   cc 

>mmu-mir-1944 (-24.60)   [mmu-miR-1944:40-66]

--      ca   g u    cuu      gg   -    a 
  aagcca  aau a gaac   uugacg  cgg acag a
  ||||||  ||| | ||||   ||||||  ||| |||| a
  uucggu  UUA U CUUG   AACUGU  GUC UGUC C
au      --   G -    ---      AA   G    U 

>mmu-mir-1945 (-38.60)   [mmu-miR-1945:44-65]

--       c   c     u   cc    a   a   gc 
  cugaacu cga ucccg cag  cccg gaa acc  a
  ||||||| ||| ||||| |||  |||| ||| |||   
  gauuuga guu AGGGC GUC  GGGC CUU Ugg  c
uc       u   C     U   AU    G   C   gc 

>mmu-mir-1306 (-30.40)   [mmu-miR-1306:11-31]

--     --     -A       UCU  U   GA   a 
  gaggu  aaugg  CGUUGGC   GG GGU  UGg c
  |||||  |||||  |||||||   || |||  ||| a
  cuuca  uuacc  gcagccg   cc cca  gcc g
au     ac     ca       --u  u   -a   u 

>mmu-mir-1946a (-45.27)   [mmu-miR-1946a:18-44]

--   -uu    --aaaucuau       C         A  CA     a   ---ccaa       gag 
  aac   aaag          AGCCGGG AGUGGUGGC CA  CUUUU auc       cacuugu   g
  |||   ||||          ||||||| ||||||||| ||  ||||| |||       |||||||   c
  uug   uuuc          ucggcuc ucaccaccg gu  ggaaa uag       guggacg   a
aa   uuu    cucuccucuu       -         c  ac     c   ucuuuag       gac 

>mmu-mir-1947 (-45.70)   [mmu-miR-1947:15-36]

--  aca   ug       AC         G      -Gc  a 
  ga   agg  guggAGG  GAGCUAGCU AGUGCU   ag c
  ||   |||  |||||||  ||||||||| ||||||   || a
  cu   ucc  uaccucc  cucgaucga ucacga   uc c
aa  -cg   cg       cu         g      gaa  u 

>mmu-mir-1937b-1 (-55.50)   [mmu-miR-1937b:30-47]

-  --g     -    -ac      --a     - aa       -  --    ----C    -    uaa 
 gg   ucucu gaga   uggggu   ggcca c  AUCCCGG AC  GAGC     CCCA caug   g
 ||   ||||| ||||   ||||||   ||||| |  ||||||| ||  ||||     |||| ||||   a
 cc   agaga uucu   acccca   ccggu g  uagggcc ug  uucg     gggu guac   c
a  aaa     g    aca      caa     c ag       c  aa    ucucc    c    ccc 

>mmu-mir-1948 (-52.00)   [mmu-miR-1948:52-73]

              a       a               gug 
auucucaccuuacu uaugagu uucugccuaaaugug   u
|||||||||||||| ||||||| |||||||||||||||   a
uaagaguggaauGA AUGCUCA GAGACGGAUUUacau   c
              C       C               agg 

>mmu-mir-1949 (-26.50)   [mmu-miR-1949:46-69]

--    -             gcc     c  gc  c 
  gcug guuggcauucugg   ugguu au  ca c
  |||| |||||||||||||   ||||| ||  ||  
  UGAU CGACUGUAGGACC   AUCaa ug  gu u
gU    A             -AU     u  uu  c 

>mmu-mir-1950 (-34.50)   [mmu-miR-1950:7-28]

             C      U        uu  uug 
gcuuuuUCUGCAU UAAGGA AUGGUCAu  aa   u
||||||||||||| |||||| ||||||||  ||    
cgaaaaagacgua auuccu uacuagua  uu   u
             a      c        cc  uuu 

>mmu-mir-669l (-39.40)   [mmu-miR-669l:19-40]

--    --   c     c     GU  U     C              au 
  guuu  gug augug guauA  UG GUGUG AUGUAUAUGUgugu  a
  ||||  ||| ||||| |||||  || ||||| ||||||||||||||   
  caag  uac uacgc cauau  ac cacac uacauauacauaua  u
ca    ua   u     a     au  c     a              ag 

>mmu-mir-669m-1 (-38.20)   [mmu-miR-669m:58-79]

u   --     a   g      gu        c     c    g   au 
 gua  ugugc ugu uguaua  uuugugug augug augu ugu  a
 |||  ||||| ||| ||||||  |||||||| ||||| |||| |||   
 cau  acacg acg acaUAU  AAACACAC UACAU UAca aua  u
a   ag     a   a      AC        C     A    g   ag 

>mmu-mir-669m-2 (-40.00)   [mmu-miR-669m:57-78]

--     --       g      gu        c     c        au 
  auauu  ugcaugu uguaua  uuugugug augug augugugu  a
  |||||  ||||||| ||||||  |||||||| ||||| ||||||||   
  uauag  acguacg acaUAU  AAACACAC UACAU UAcauaua  u
ca     ac       a      AC        C     A        ag 

>mmu-mir-669o (-40.40)   [mmu-miR-669o:19-41]

-  ca     a     g    GU        C     U        au 
 ug  ugugc ugugu uaUA  UGUGUGUG AUGUU AUGUgugu  u
 ||  ||||| ||||| ||||  |||||||| ||||| ||||||||   
 ac  acacg acaca auau  acacacac uacaa uacauaua  u
c  ac     a     a    gc        a     -        ag 

>mmu-mir-1951 (-37.30)   [mmu-miR-1951:53-74]

--u   ug  -       aaa -    uc        u    c gaa 
   ggg  gg gguuuag   c cacc  ucuucacu acuu u   a
   |||  || |||||||   | ||||  |||||||| |||| |    
   ucc  uc ccaaAUC   G GUGG  AGAGGUGA UGga a   g
ccc   gu  u       --G U    UC        -    a auu 

>mmu-mir-1952 (-29.50)   [mmu-miR-1952:15-31]

--  c      a   a  -     CCU    CU u     cu 
  cc ucucuu uug UC UCCAC   CCUU  G gcagg  u
  || |||||| ||| || |||||   ||||  | |||||  a
  gg agagaa aac ag aggug   ggaa  c cgucc  u
aa  u      -   -  u     --u    -c u     uu 

>mmu-mir-1953 (-40.80)   [mmu-miR-1953:16-37]

--  u      u  ucuU   A  G   U   G      agaa  u 
  gg gcugcc gg    GGG AA UUC CAG CUUCUG    uu g
  || |||||| ||    ||| || ||| ||| ||||||    || c
  cc cgacgg cc    ccc uu gag guc gaagac    ag a
au  -      u  uucu   c  g   u   g      ---g  g 

>mmu-mir-1954 (-41.27)   [mmu-miR-1954:14-34]

g   uc      aA     G  U           guuuguuu 
 agg  agccag  CUGCA AG GAGACCCUGUU        g
 |||  ||||||  ||||| || |||||||||||         
 ucc  ucgguc  gaugu uc cuuuggggcag        u
a   ua      cc     g  u           aguuuguu 

>mmu-mir-1955 (-38.20)   [mmu-miR-1955:18-42]

--   -guuu   u      A       G     C   AG   UU   ua 
  cug     acu acuaca GUCCCAG AUGCA UGC  CUU  ucu  a
  |||     ||| |||||| ||||||| ||||| |||  |||  |||  c
  gau     ugg ugaugu caggguc uacgu acg  gaa  aga  u
ac   aaauu   u      a       g     u   -a   -u   cu 

>mmu-mir-669n (-20.10)   [mmu-miR-669n:4-23]

     U  -    U     UG    ua 
uacAU UG UGUG GGAUG  UGUg  a
||||| || |||| |||||  ||||   
gugua ac acac ccuac  guau  a
     c  g    -     gu    gu 

>mmu-mir-1956 (-36.60)   [mmu-miR-1956:5-26]

--  ucA       -   G      C      cc 
  cu   GUCCAGG GCU AGUCAG GGAgcc  g
  ||   ||||||| ||| |||||| ||||||   
  ga   caggucc cgg ucgguc cuucgg  a
cg  -ug       a   -      c      ug 

>mmu-mir-1937c (-27.60)   [mmu-miR-1937c:40-57]

--     caa     -a    u     uc    u 
  acauc   ggggu  uucu ggguu  uggg g
  |||||   |||||  |||| |||||  ||||  
  uguag   CCCCG  AAGG CCUAa  accc c
aa     uAC     AG    C     --    c 

>mmu-mir-1957 (-27.70)   [mmu-miR-1957:14-32]

--    aaagu       U   AGA       A 
  cugg     agcuCAG GGU   GCAUAUG C
  ||||     ||||||| |||   ||||||| c
  gacc     uugaguc ccg   cguguac a
ac    ccuau       -   gaa       g 

>mmu-mir-1958 (-65.81)   [mmu-miR-1958:61-82]

--                                      uuuaauuu 
  agccuagaagagaacuuacugcuuccacuuuccuauag        c
  ||||||||||||||||||||||||||||||||||||||        u
  uuggaucuucucuUGAAUGACGAAGGUGAAAGGAUauc        a
cc                                      uuacguca 

>mmu-mir-1959 (-40.50)   [mmu-miR-1959:7-26]

-a      G             U  AGgag    ugcc 
  gggccG GGAUGUAGCUCAG GG     uccu    c
  |||||| ||||||||||||| ||     ||||     
  cccggc ccuauauuggguc cc     agga    a
ac      a             -  -ggaa    caaa 

>mmu-mir-1960 (-42.10)   [mmu-miR-1960:13-34]

     u   c  C         U           gagag 
cagag gag ag CAGUGCUGU AGAAGAGGGCU     c
||||| ||| || ||||||||| |||||||||||      
gucuc cuu uc gucacgacg ucuucucucga     a
     -   u  a         -           gaggg 

>mmu-mir-1961 (-38.20)   [mmu-miR-1961:82-98]

--   ag    aucu       -   -  gc    cc     ccuauac  c        a 
  gcu  ccau    gaaguuc aac ac  ccuc  cucuu       gu uauggagg u
  |||  ||||    ||||||| ||| ||  ||||  |||||       || |||||||| u
  cga  ggua    uuucAAG UUG UG  GGAG  gagag       ca auaccucc u
aa   --    ---c       A   A  AU    Ua     ----uuc  u        a 

>mmu-mir-1962 (-51.90)   [mmu-miR-1962:73-94]

--  ug  -auuu   a   augua        gug      uc    u        cuc uuc 
  ug  gc     gca acu     gucaguca   guccca  uguc gccucucu   g   a
  ||  ||     ||| |||     ||||||||   ||||||  |||| ||||||||   |    
  ac  cg     cgu ugg     uagucagU   CAGGGU  ACGG CGGAGAgg   c   g
ug  gu  ccccu   a   -----        ACA      -C    U        uac uuu 

>mmu-mir-1963 (-31.40)   [mmu-miR-1963:2-24]

-cU        AUCA    G      ug   
   GGGACGAG    UGAG CCUUCc  gc 
   ||||||||    |||| ||||||  | c
   cccuguuc    gcuc ggaagg  ca 
acg        -ccg    a      gu   

>mmu-mir-1964 (-47.20)   [mmu-miR-1964:51-72]

--       g            a  a   c     cc   g 
  cuuucuu cgaagcuggagc ca aag cggug  ggu u
  ||||||| |||||||||||| || ||| |||||  ||| g
  gaaggaa gUUUCGGCCUCG GU UUC GCCac  ccg a
ag       g            G  C   A     au   u 

>mmu-mir-1965 (-61.80)   [mmu-miR-1965:100-120]

--            c   -       cu uu     guuuu        c       ccauc   u 
  ggcuugcgccac aug ccuggcu  u  guuuu     auugugau cuagauc     aug g
  |||||||||||| ||| |||||||  |  |||||     |||||||| |||||||     |||  
  ccgaACGCGGUG UGC GGGCCGA  g  caagg     uaacacua gauuuag     uac a
uu            A   C       Au uc     ---ac        c       --auc   a 

>mmu-mir-1966 (-37.40)   [mmu-miR-1966:16-40]

-- u    u      g  A   ---A   G   C   A      Cc    au     c 
  g agaa aguguu gA GGG    GCU GCU AGG GAGAGU  ugag  uuagg u
  | |||| |||||| || |||    ||| ||| ||| ||||||  ||||  ||||| c
  c ucuu ucgcaa uu ccu    uga cga ucc cucuca  acuc  agucu u
ag u    -      g  a   gaac   a   u   -      --    --     u 

>mmu-mir-1967 (-30.50)   [mmu-miR-1967:48-70]

  --u         u    u      uu c     u  ucu 
cc   gaauucugu ucuu cucucu  g uccuu ug   g
||   ||||||||| |||| ||||||  | ||||| ||   a
gg   cuuaagaCG AGAA GAGGGG  C AGGAG ac   c
  ucc         U    -      UC U     U  uua 

>mmu-mir-1968 (-42.30)   [mmu-miR-1968:8-31]

      cU        UA   A      -A   u 
ccuccu  GCAGCUGU  AGG UGGUGG  CUa u
||||||  ||||||||  ||| ||||||  |||  
ggagga  ugucgacg  ucc accacc  gau g
      au        uc   -      gg   u 

>mmu-mir-1969 (-31.60)   [mmu-miR-1969:17-39]

aua   -   g     gA        A UUUAA        cuc    aa 
   gug cua aggcu  AGAUGGAG C     CAUGGGUg   uuaa  u
   ||| ||| |||||  |||||||| |     ||||||||   ||||   
   uac gau ucugg  uuuaccuc g     guaccuac   aauu  c
-ac   a   g     uc        c ---uc        ---    gu 

>mmu-mir-1946b (-70.22)   [mmu-miR-1946b:100-125]

--               c             --a      -----agag  aa  -      ua   g c 
  gggauuaaaggcgug gccaccacugccc   gcuuuc         ug  uu ugaggc  ucu g u
  ||||||||||||||| |||||||||||||   ||||||         ||  || ||||||  ||| | a
  cccuaaUUUUCGUAC CGGUGGUGACGGG   ugaaag         au  ga acuucg  aga u u
ga               A             CCG      gggaaaaga  gg  c      uc   g a 

>mmu-mir-1970 (-40.30)   [mmu-miR-1970:22-44]

--   g    uu  ---u      -aaU           GA A    UU   g  u 
  gau ugca  gu    ggagga    GUGUCACUGGG  U GGCU  Gag uu c
  ||| ||||  ||    ||||||    |||||||||||  | ||||  ||| ||  
  cua acgu  cg    ccuucu    cacggugaucc  a cuga  cuc aa a
uc   g    -c  uugu      cacu           gg -    --   g  g 

>mmu-mir-1274a (-35.40)   [mmu-miR-1274a:8-29]

--     cu    --  C       -AG   CCAaac         c 
  ccauu  UCAG  GU CCUGUUC   GCG      uguugcugg c
  |||||  ||||  || |||||||   |||      |||||||||  
  gguag  aguc  ca ggacaag   cgc      acggcgacc g
ac     --    ga  u       gaa   ------         u 

>mmu-mir-1971 (-37.00)   [mmu-miR-1971:11-28]

gcaucauuugGUAA   C          ---     ucu       a    ccc      u  g 
              AGG UGGGCUGAGA   ggaca   uuguucc ugga   aguaga ag c
              ||| ||||||||||   |||||   ||||||| ||||   |||||| ||  
              ucu aucugacuuu   ucugu   aacaagg accu   ucgucu uc a
--------------   -          uug     -uc       -    ---      -  g 

>sly-MIR156a (-43.44)   [sly-miR156a:1-21]

U         -           u     --   u     aauuuca   a 
 UGACAGAAG AUAGAGAGCAC aauga  uga augcu       uuc a
 ||||||||| ||||||||||| |||||  ||| |||||       ||| u
 acugucuuc uaucucucgug uuacu  acu uacga       ggg u
u         g           u     ua   c     aaacgac   u 

>sly-MIR156b (-39.10)   [sly-miR156b:1-21]

U         -       G     au   -       uaauu 
 UGACAGAAG AUAGAGA CACga  aau gaggugc     g
 ||||||||| ||||||| |||||  ||| |||||||      
 acugucuuc uaucucu guguu  uua uuccacg     g
u         a       a     cc   a       ucgaa 

>sly-MIR156c (-40.20)   [sly-miR156c:1-21]

U          UA           -uaac       uaauu 
 UGACAGAAGA  GAGAGCACgaa     gaggugc     g
 ||||||||||  |||||||||||     |||||||      
 acuguuuucu  cucucguguuu     uuccacg     g
u          ua           cuuaa       uacaa 

>sly-MIR159 (-73.70)   [sly-miR159:157-177]

           ga       c   aa   u    ---   u    u     g     c    g uu   c  c        uu    auu 
uggagcuccuu  aguccaa aaa  auc aaca   ggu aaau gagcu cugac uaug a  ccu ag ccuaucua  uaug   u
|||||||||||  ||||||| |||  ||| ||||   ||| |||| ||||| ||||| |||| |  ||| || ||||||||  ||||    
AUCUCGAGGGA  UUAGGUU uuu  uag uugu   cca uuua uucga gacug auac u  ggg uu ggauagau  auac   c
           AG       U   ac   u    uuc   u    u     g     u    g uu   u  u        --    aaa 

>sly-MIR162 (-29.96)   [sly-miR162:79-99]

ca   g    c   acc       c     cuggaa    -   auauau 
  gga gcag ggu   auugauc guucc      gcug aau      a
  ||| |||| |||   ||||||| |||||      |||| |||      u
  CCU CGUC CCA   UAGCUgg uaagg      cgac uua      a
GA   A    U   -AA       c     --aaaa    a   caacgc 

>sly-MIR172a (-39.80)   [sly-miR172a:86-106]

   ug    a          a     aaa   g    --- ug     a     g 
aug  gcau aucaagauuc cguga   guu caaa   u  guuau uaauu a
|||  |||| |||||||||| |||||   ||| ||||   |  ||||| ||||| u
UAC  CGUA UAGUUCUAAG gcacu   caa guuu   g  cggua auuaa g
   GU    G          A     ---   a    auc gu     -     a 

>sly-MIR172b (-47.50)   [sly-miR172b:115-135]

                    a   -a     auuaag     a     aau     gcuuua    gaa 
auguagcaucaucaagauuc uac  ugaaa      aggca gguua   augua      auuu   a
|||||||||||||||||||| |||  |||||      ||||| |||||   |||||      ||||    
UACGUCGUAGUAGUUCUAAG gug  acuuu      ucugu ccagu   uauau      uaaa   u
                    A   aa     -auuua     a     -ac     --aaua    aag 

>sly-MIR319 (-77.40)   [sly-miR319:149-168]

-       -         cac       a ga    gu        --  g   ac       uc  aa         ----    a 
 gagcuuc uuuagucca   augggga c  uagg  ucaauuug  cu ccg  ucauuca  ca  uguugaggu    cuug u
 ||||||| |||||||||   ||||||| |  ||||  ||||||||  || |||  |||||||  ||  |||||||||    |||| a
 CUCGAGG AAGUCAGGU   uguccuu g  guuc  aguugaac  ga ggc  aguaagu  gu  acgacucca    gagc a
C       G         UCa       c -a    ug        au  g   ga       ga  ca         ccgu    u 

>sly-MIR399 (-30.40)   [sly-miR399:51-71]

      u  a    a       -g  a  ug uca 
uagggc ac cucu uuggcau  ca cu  a   a
|||||| || |||| |||||||  || ||  |    
AUCCCG UG GAGG AACCGUa  gu ga  u   a
      U  A    A       aa  c  gu uau 

>jcv-mir-J1 (-35.80)   [jcv-miR-J1-5p:15-36] [jcv-miR-J1-3p:58-79]

    cac      c     A   C    AA     Uu  g    u 
ucug   cagagg UUCUG GAC UGGG  AAGCA  gu auug g
||||   |||||| ||||| ||| ||||  |||||  || |||| a
agac   gucuuC GAGAC CUG ACCU  UUCGU  cg ugac u
    uuc      U     -   U    AG     uu  -    u 

>bkv-mir-B1 (-43.10)   [bkv-miR-B1-5p:26-47] [bkv-miR-B1-3p:64-85]

    aucuucag   gg       uA    A   U    AA        u   u 
ggga        cag  gcugaag  UCUG GAC UGGG  GAGCAUug gau g
||||        |||  |||||||  |||| ||| ||||  |||||||| |||  
uccu        guc  ugacuuC  AGAC CUG ACCU  UUCGUgac uua g
    ------aa   uu       UG    -   U    AG        -   g 

>hsa-mir-1972-1 (-38.12)   [hsa-miR-1972:48-69]

          u     caca        a   guguc 
uauaggcaug gccac    ccuggcuu aau     a
|||||||||| |||||    |||||||| |||     u
auguccguAC CGGUG    GGACCGGA Uua     u
          U     ACAC        C   aaaau 

>hsa-mir-1973 (-10.80)   [hsa-miR-1973:26-44]

      - aacg  c     au 
uauguu c    gc auggu  c
|||||| |    || |||||   
AUACGA G    CG UGCCA  c
      U GAAA  -     gu 

>hsa-mir-1975 (-26.40)   [hsa-miR-1975:51-75]

        c      ---      -----u  u       u 
aguugguc gagugu   uguggg      ua uguuaag u
|||||||| ||||||   ||||||      || |||||||  
UCGAUCAG UUCGCG   ACACCC      gu acaauuu g
        -      CCA      CCcucu  u       a 

>hsa-mir-1976 (-34.50)   [hsa-miR-1976:33-52]

          a        uc uaa 
gcagcaagga ggcagggg  c   g
|||||||||| ||||||||  |    
UGUCGUUCCU CCGUCCUC  g   g
          C        Cu ugu 

>hsa-mir-1979 (-25.30)   [hsa-miR-1979:7-28]

u    a   C    GC    CUU     -      aa 
 cuuu CUC CACU  UUCA   GACUA gccuuu  a
 |||| ||| ||||  ||||   ||||| ||||||  a
 gaaa gag gugg  aagu   uuggu cggaaa  a
g    a   a    gu    agu     u      ga 

>mmu-mir-1983 (-52.50)   [mmu-miR-1983:100-120]

---ccuuuaca                 ---u   --------    --     uag   g g    u     a 
           gagaaagcaugcuccag    ggc        gcaa  ucggu   cgc c guac uauac g
           |||||||||||||||||    |||        ||||  |||||   ||| | |||| |||||  
           uUCUUUUGUACGAGGUC    Ccg        uguu  agccg   gug g cgug auaug c
ccgccuuuccc                 CACU   agcuugag    gg     -ua   - g    u     a 

>mmu-mir-1839 (-22.60)   [mmu-miR-1839-5p:4-25] [mmu-miR-1839-3p:43-65]

---------gaaAA         AAC        uu gca 
              GGUAGAUAG   AGGUCUUG  u   a
              |||||||||   ||||||||  |   a
              CCAUCUAUU   UCCAGAac  a   a
uccguuacCGACAA         -CA        uu aau 

>mmu-mir-1981 (-32.20)   [mmu-miR-1981:1-24]

---G       UG  C     CG    cu   g ug     u 
    UAAAGGC  GG UUAGA  UGGC  uug g  uggaa g
    |||||||  || |||||  ||||  ||| |  ||||| c
    guuuccg  cc aaucu  accg  aau u  gccuu a
gaca       gu  c     --    cc   g uu     c 

>mmu-mir-1982 (-27.80)   [mmu-miR-1982*:12-31] [mmu-miR-1982.1:52-74] [mmu-miR-1982.2:54-74]

guugguauugcU      GG CCU   -      aguuc   c 
            UGGGAG  U   GGG GAGGgg     ugg a
            ||||||  |   ||| ||||||     |||  
            ACCCUC  G   CCC CUCUcc     acc c
---------GAC      UU UAU   A      ----a   c 

>bmo-mir-12 (-12.43)   [bmo-miR-12:4-26]

------u    -      A  -UC   UA   -    uauuaaauaaaa 
       ucUG AGUAUU CU   AGG  CUG GUug            a
       |||| |||||| ||   |||  ||| ||||            a
       aggc uuauag ga   ucc  gac caau            c
agcauuu    a      a  uaa   --   a    uauugaauaagg 

>bmo-mir-137 (-31.00)   [bmo-miR-137:55-76]

uaac  -g    ga  uc   c       ug  g   u    - aua 
    ac  cuug  gg  acg guauucu  gg aau aaca c   u
    ||  ||||  ||  ||| |||||||  || ||| |||| |    
    ug  gaac  uc  UGC CAUAAGA  UC UUA UUgu g   g
---a  ag    ag  gA   A       GU  G   -    a agu 

>bmo-mir-190 (-42.90)   [bmo-miR-190:17-39] [bmo-miR-190*:55-78]

ga      c     c   --           A    U   U    g 
  gccgcg gucgu gAG  AUAUGUUUGAU UUCU GGU guuu u
  |||||| ||||| |||  ||||||||||| |||| ||| |||| u
  cggcgc cagca CUC  UAUACAAACUA AGGG CCa uagg u
-c      -     U   AU           -    C   c    u 

>bmo-mir-285 (-33.00)   [bmo-miR-285:55-76]

ugu        u  ca    u         u   ga    uu u 
   ccauguuu ga  acug auucgagug gug  agag  u a
   |||||||| ||  |||| ||||||||| |||  ||||  | a
   ggugcaag cu  UGAC UAAGCUUAC CAC  Ucuc  a a
auu        -  CG    U         -   GA    cu a 

>bmo-mir-92b (-39.00)   [bmo-miR-92b:54-75]

  g         cu    a  c    a       acguu      
gc guggccacg  uagg cg gauu gguguaa     ugugu 
|| |||||||||  |||| || |||| |||||||     |||| u
cg caccggugu  GUCC GC CUAA CCACGUU     auacu 
  a         cC    G  C    -       AAacu      

>bmo-mir-927 (-30.90)   [bmo-miR-927:15-36] [bmo-miR-927*:54-72]

-u    ccu     c          CU       A  guu  ca 
  gcag   uuuug UUUAGAAUUC  ACGCUUU CC   gc  a
  ||||   ||||| ||||||||||  ||||||| ||   ||   
  cguc   aaagc aAAUCUUAGG  UGCGAAA gg   ug  g
ac    aau     a          UU       C  -gu  au 

>bmo-mir-929 (-34.90)   [bmo-miR-929:7-27] [bmo-miR-929*:39-60]

--------------------u     A       UAG         -  u 
                     guuaa UUGACUC   UAGGGAGUC Cg u
                     ||||| |||||||   ||||||||| || c
                     cAGUU GACUGAG   AUCCCUCag gc c
gcagcuaaaucguaguuucuu     G       CUA         c  g 

>bmo-mir-932 (-40.70)   [bmo-miR-932:12-33]

-----------     ga       A       G   A      --u  a 
           guguu  ggcuUCA UUCCGUA UGC UUGCAG   gc u
           |||||  ||||||| ||||||| ||| ||||||   || g
           uacgg  ucggagu agggcgu acg aacguc   cg c
caucaauuccg     ag       g       g   -      cac  u 

>bmo-mir-9b (-50.40)   [bmo-miR-9b:17-39] [bmo-miR-9b*:53-74]

-gac      ac            UA  C      UA   a  ga 
    ggcgcg  gcgauGCUUUGG  AU UAGCUU  UGA cg  a
    ||||||  ||||||||||||  || ||||||  ||| ||   
    ccgcgc  cgcuGCGAAACC  UA AUCGAG  Acu gu  u
cggc      ga            GC  A      GC   -  ag 

>bmo-mir-iab-4 (-37.70)   [bmo-miR-iab-4-5p:15-36] [bmo-miR-iab-4-3p:53-76]

gc    c       -            U    C   A u   cg 
  gucg cuucugu ACGUAUACUGAA GUAU CUG g gcg  a
  |||| ||||||| |||||||||||| |||| ||| | |||  u
  cagu gaagaCA UGCAUAUGACUU CAUA GGC c ugu  u
ca    a       A            C    U   - -   uc 

>bmo-mir-278 (-40.60)   [bmo-miR-278*:17-38] [bmo-miR-278:53-74]

    c     c    cC        CU     G U     gaca 
guau aagug uacg  CGGACGAA  UCCCA C CGGcc    a
|||| ||||| ||||  ||||||||  ||||| | |||||     
caua uucgc augU  GCCUGCUU  AGGGU G GCUgg    u
    -     u    UU        CU     - -     ggac 

>bfl-let-7-2 (-50.00)   [bfl-let-7:21-42]

agacac g    a  ug   U   G                  agaagua  u 
      g gugc cc  agg GAG UAGUAGGUUGUAUAGUUg       ca c
      | |||| ||  ||| ||| ||||||||||||||||||       ||  
      c uacg gg  ucc cuc aucguccaacgugucaau       gu a
-----c g    -  gu   u   g                  ---agag  u 

>bfl-mir-1 (-44.00)   [bfl-miR-1:56-77]

----cca          g    a            u  c      ugaa 
       ggccuguuaa caua guacuucuuuac au ccauac    c
       |||||||||| |||| |||||||||||| || ||||||    u
       ucggacgauu gUAU UAUGAAGAAAUG UA GGUaug    c
ugcacca          g    G            -  A      uuaa 

>bfl-mir-7 (-37.20)   [bfl-miR-7:11-33]

-    u     U        A       UGU      g  u 
 gugu cugua GGAAGACU GUGAUUU   UGUugu ug c
 |||| ||||| |||||||| |||||||   |||||| || u
 uacg ggcau ccuucuga cacuaaa   acaaca ac u
c    u     u        -       -ug      a  g 

>bfl-mir-10a (-31.90)   [bfl-miR-10a:8-30] [bfl-miR-10a*:47-67]

--      -     C      UC          -uga    
  cuauau gUACC UGUAGA  CGAAUUUGUG    ggu 
  |||||| ||||| ||||||  ||||||||||    || a
  gaugua UAUGG ACGUCU  GCUUAAACac    ccc 
cc      a     -      UU          ugaa    

>bfl-mir-10b (-42.42)   [bfl-miR-10b:21-44]

--ac    - g           a    C   G A   G        Ucgcu 
    guuu u guggucuauau AACC UGU G UCC AUCUUGUG     a
    |||| | ||||||||||| |||| ||| | ||| ||||||||     u
    cgaa a caccagauaua uugg aca u agg uggaacac     a
ccua    u g           c    -   g c   g        caaaa 

>bfl-mir-10c (-30.20)   [bfl-miR-10c:11-32]

ucc     -a   C          C   C     gucac 
   ccagg  uUA CCUGUAGAUC GGA UUGUg     u
   |||||  ||| |||||||||| ||| |||||      
   gguuc  gau ggacauuuag ccu aacac     u
aac     cg   a          -   a     acuac 

>bfl-mir-22 (-48.20)   [bfl-miR-22:52-73]

ua     a                aac       cug     a 
  cccug gaggcguagcucuuca   gguagcu   ugguu c
  ||||| ||||||||||||||||   |||||||   |||||  
  gggac cuucgUGUCGAGAAGU   CCGUCGA   acuag c
ac     -                AGA       --A     u 

>bfl-mir-29a (-47.12)   [bfl-miR-29a:61-83]

uccugggaau         g  -           gu          uagaa 
          ucugugcac ga agcugauuuca  uggugcuaga     g
          ||||||||| || |||||||||||  ||||||||||     u
          ggauacgug cU UUGACUAAAGU  ACCACGAUcu     c
---------c         g  A           AU          ugcgg 

>bfl-mir-29b (-37.30)   [bfl-miR-29b:63-85]

cacugcagguuuu   -         -       c        g g     ggc 
             cua uccuggaag acugguu caaguggu g uagau   a
             ||| ||||||||| ||||||| |||||||| | |||||   c
             gau aggacuUUC UGACUAA GUUUACCA C Aucua   u
-------------   c         G       A        - G     gag 

>bfl-mir-31 (-51.40)   [bfl-miR-31:19-41]

-----ugac    --g   a          AGA   UG         -  ug a 
         ggag   gcg ggaaaUGGCA   UGU  GCAUAGCUG Uu  g g
         ||||   ||| ||||||||||   |||  ||||||||| ||  |  
         ccuc   ugc ccuuuaccgu   aca  cgugucggc gg  c u
caacauuau    acu   -          caa   gu         u  gu u 

>bfl-mir-33-2 (-49.60)   [bfl-miR-33:16-37]

aca     ug  a   -                     gug aa 
   ccugu  cu ggG UGCAUUGUAGUUGCAUUGCAU   c  c
   |||||  || ||| |||||||||||||||||||||   |   
   ggacg  ga ccc acgugacgucaauguaacgug   g  a
caa     ga  -   g                     -aa ac 

>bfl-mir-34 (-38.40)   [bfl-miR-34:21-45]

------ugguuac          c     C      G    C    C   Ucu 
             cuguguguug ugUGG AGUGUG AUAG UGGC GUU   a
             |||||||||| ||||| |||||| |||| |||| |||    
             ggcacacaau augcc ucacac uguc accg caa   a
ggcacaacauuca          a     c      a    -    a   uau 

>bfl-mir-71 (-41.60)   [bfl-miR-71:22-43]

-    uag      c   a    -        U   U    A   uu  au 
 gcua   uugcca cac uugU GAAAGACA GGG AGUG GAU  gu  c
 ||||   |||||| ||| |||| |||||||| ||| |||| |||  ||  a
 cgau   gacggu gug aaca cuuucugu ccc uuac cua  ua  u
a    -uu      u   g    a        -   u    c   uu  ag 

>bfl-mir-92a-1 (-38.60)   [bfl-miR-92a:60-81]

ca  u   --gu   cu      c     a    u    g       u   a 
  ca auu    gcc  gucaga agguc ggau ggug caaugcu aua a
  || |||    |||  |||||| ||||| |||| |||| ||||||| |||  
  gu uga    ugg  uagucU UCCGG CCUG UCAC GUUAUga ugu c
-c  c   aaau   -u      U     C    U    -       c   g 

>bfl-mir-92b (-44.50)   [bfl-miR-92b:61-82]

-aagauac     u   g        u    -   u     c    uu     
        ggcgu guu cuuagguc ggac agu gcaau uucg  cugu 
        ||||| ||| |||||||| |||| ||| ||||| ||||  ||| u
        ccgcg caa gAGUCCGG CCUG UCA CGUUA aagc  gacu 
acuuuuaa     c   a        C    C   -     C    -c     

>bfl-mir-96 (-40.50)   [bfl-miR-96:21-43]

--ccug  -u     uu   c               C     U   gg   g 
      cc  cuuuc  gcu ugUUUGGCACUAGCA AUUUU GCU  gca g
      ||  |||||  ||| ||||||||||||||| ||||| |||  |||  
      gg  gaaag  cga auaaaccgugauugu uaaaa cgg  ugu u
cauuca  cc     uc   c               -     c   -a   g 

>bfl-mir-100 (-40.00)   [bfl-miR-100:21-43]

----    aaa   -g c  c    A         UC   A      Uu  u 
    agau   gcc  g ug caua ACCCGUAGA  CGA CUUGUG  gc u
    ||||   |||  | || |||| |||||||||  ||| ||||||  ||  
    ucua   cgg  c ac guau uggguaucu  gcu gaacac  ug c
cacg    caa   ga u  u    c         gu   c      -u  a 

>bfl-mir-124 (-36.40)   [bfl-miR-124:61-82]

cggcaaaucuc    ug c    a        g   gu        ua    
           ggcu  g ucuu guguucac gcg  ccuuaauu  aca 
           ||||  | |||| |||||||| |||  ||||||||  || u
           ccgg  c agAA CGUAAGUG CGC  GGAAUuaa  ugu 
--acuccuaaa    ga a    C        G   AC        cg    

>bfl-mir-125 (-48.00)   [bfl-miR-125:22-43]

---aucuguu       -  -    -     U    C            u  c 
          ggugugu uc ccca uUCCC GAGA CCUAACUUGUGA gu c
          ||||||| || |||| ||||| |||| |||||||||||| || a
          ccgcaua ag gggu gaggg uucu ggauuggacacu cg u
acuucaccuc       c  u    c     -    a            -  g 

>bfl-mir-133 (-36.40)   [bfl-miR-133:62-83]

aguauca gg --   u      a       acauu  a        aacuc 
       g  a  ugc gugcua agcuggu     gg accaaauc     c
       |  |  ||| |||||| |||||||     || ||||||||      
       c  u  acg uacgAU UCGACCA     CC UGGUuuag     u
---cgaa uu uc   u      G       ACUUC  C        guaac 

>bfl-mir-137 (-49.00)   [bfl-miR-137:61-82]

gauaaa       u           g       ug   u         cu 
      uacgcac gcucggucacg guauucu  ggu aauaauaua  a
      ||||||| ||||||||||| |||||||  ||| |||||||||  u
      gugugug ugagucAGUGC CAUAAGA  UCG UUAUuauau  u
cucaga       -           A       GU   -         cu 

>bfl-mir-182 (-37.60)   [bfl-miR-182:21-43]

aaucauuugggcuu           C   A U           -    --  aaa  g 
              aauuugCUUGG ACU G GGAAUUCUUUG uuca  gg   ca u
              ||||||||||| ||| | ||||||||||| ||||  ||   || g
              uuaaacgaacc uga c ccuuaagaaac gagu  cc   gu c
--------------           a   c -           u    ua  gag  a 

>bfl-mir-183 (-43.10)   [bfl-miR-183:21-42]

-----c  cgug     u      c      --     U     U     aucg 
      ca    cccgu cacggu UAUGGC  ACUGG AGAAU CACUg    u
      ||    ||||| |||||| ||||||  ||||| ||||| |||||    a
      gu    gggcg gugcca auaccg  ugacu ucuua gugac    g
cuacua  caaa     -      c      ac     -     -     caca 

>bfl-mir-184 (-43.30)   [bfl-miR-184:61-81]

--cuccug    u     cu         c    u   -   ---a     ug 
        guuc gcacg  cccuuauca uucu ccg ccg    gcucg  u
        |||| |||||  ||||||||| |||| ||| |||    |||||   
        caag cgugc  GGGAAUAGU AAGA GGC GGU    ugagu  c
ccuaacca    c     cc         C    -   A   cgac     cu 

>bfl-mir-190 (-39.30)   [bfl-miR-190:21-43]

----aagcac     u  uc     G             -       Uuaac 
          ugugg gu  ugggU AUAUGUUUGAUAU UUGGUUG     u
          ||||| ||  ||||| ||||||||||||| |||||||      
          auacc cg  accua uauacaaacuaua aaccaac     u
accgacacac     c  ga     g             u       cuauc 

>bfl-mir-193 (-27.90)   [bfl-miR-193:48-71]

c   c     aaa     c     a    c  ugu u 
 aug ucaau   gacuu agggg cagu gg   c a
 ||| |||||   ||||| ||||| |||| ||   | g
 ugc aGUUG   CUGAA UCCCC GUCA cc   g c
u   -     GCC     U     G    U  uuu a 

>bfl-mir-200a (-31.60)   [bfl-miR-200a:60-81]

--gacau uu       uuc   a    -     u     c   -c      u 
       g  agcuuga   cug cauc uuacu ggcag auu  gaugug u
       |  |||||||   ||| |||| ||||| ||||| |||  ||||||  
       c  uugaacu   gac GUAG AAUGG CCGUC UAA  uuauac u
ugacacu cu       ---   C    U     U     A   Ac      c 

>bfl-mir-200b (-46.30)   [bfl-miR-200b:59-81]

aca      g      g       -           cau     -    g 
   guuugg aucucg caacauc uuaccaggcag   uuagu uuuu a
   |||||| |||||| ||||||| |||||||||||   ||||| ||||  
   caaacu uggggu gUUGUAG AAUGGUCUGUC   AAUca aagg a
uga      -      g       U           -AU     u    a 

>bfl-mir-200c (-47.40)   [bfl-miR-200c:58-78]

aucuaac   -        g       -     u     gu      ggu 
       aug gcggaguu ugucauc uuacc ggcag  uuagau   u
       ||| |||||||| ||||||| ||||| |||||  ||||||   c
       uac cgccucag gcaGUAG AAUGG CUGUC  AAUcua   u
------a   a        g       U     U     AC      ggg 

>bfl-mir-210 (-50.60)   [bfl-miR-210:61-82]

---acag          g    c   u     u        a  u  --   g 
       uuggucggug cauu gcc cuguu cgcgcgca ga gu  gau u
       |||||||||| |||| ||| ||||| |||||||| || ||  |||  
       aaccggccac guAG CGG GACAG GUGCGUGU cu cg  cug u
gcugcaa          -    U   C     U        C  -  uc   a 

>bfl-mir-216 (-31.34)   [bfl-miR-216:9-31]

ugg   u UA         G   A       ucuaac 
   uug g  AUCUCAGCU GCA CUGUGAG      u
   ||| |  ||||||||| ||| |||||||       
   aac c  uagggucga cgu ggcacuc      u
uca   u gc         a   -       cuacac 

>bfl-mir-217 (-26.50)   [bfl-miR-217:8-30]

c    a   C     C      U      Aug g 
 uggg cUA UGCAU AGGAAC GAUUGG   g a
 |||| ||| ||||| |||||| ||||||   |  
 acuc ggu acgua uccuug cuaacu   c u
c    -   -     c      u      aaa a 

>bfl-mir-242 (-46.00)   [bfl-miR-242:17-39]

aug          c  U       C UU        U  cug 
   gccguccaag gu GCGUAGG G  GUGCACAC GU   g
   |||||||||| || ||||||| |  |||||||| ||    
   cggcagguuu ca ugcgucc c  caugugug ca   u
gua          a  c       u uc        c  aua 

>bfl-mir-252a (-40.00)   [bfl-miR-252a:21-43]

-a   --     --    cc     C           G C     U  - ugu 
  gug  auugu  ccug  ccaug UAAGUACUAGU C GCAGG GU c   u
  |||  |||||  ||||  ||||| ||||||||||| | ||||| || |    
  cac  uaaua  ggac  ggugc auucgugguca g cgucc ca g   u
cc   cg     au    aa     a           - a     c  u uua 

>bfl-mir-252b (-40.00)   [bfl-miR-252b:20-42]

----    gcgacug       gC       U     C      A ugcu     c 
    gaaa       ucucugu  UAAGUAG ACUGC GCAGGG G    gugga u
    ||||       |||||||  ||||||| ||||| |||||| |    ||||| g
    cuuu       agggaca  auucauc ugacg cguccc c    uaucu a
uaau    ----aca       ac       c     -      - ----     u 

>bfl-mir-281 (-45.80)   [bfl-miR-281:59-80]

cuauuucccucugu              cg         u   gaa c 
              gcggaggggagagc  uuccgugac gug   c u
              ||||||||||||||  ||||||||| |||   |  
              cgccUUUUCUCUCG  GAGGUACUG cac   g c
-------------g              UU         U   aag g 

>bfl-mir-375 (-42.80)   [bfl-miR-375:63-85]

gccacau   -    c   ca   -      ug           u  gucu 
       ccc ugcc aga  ggc cgagcc  gcgagcaaagc gu    a
       ||| |||| |||  ||| ||||||  ||||||||||| ||    a
       ggg acgg UCU  UUG GCUCGG  UGCUUGUuuug ca    a
ugcuauc   u    u   -A   C      CU           -  auuc 

>cte-mir-1 (-36.20)   [cte-miR-1:59-80]

accg     c  u   g         c     acg     uuuc   ua 
    gcgug ga ugu acauacuuc uuaca   ccaua    cca  u
    ||||| || ||| ||||||||| |||||   |||||    |||   
    cguac cu acG UGUAUGAAG AAUGU   GGUau    ggu  u
-uca     c  u   A         A     -AA     ----   ua 

>cte-mir-2a (-31.83)   [cte-miR-2a:61-83]

-------------  a   ac           -   c      uucucuuccuccuc    a 
             gg gga  cgacaaagugg cug gaugug              cgau u
             || |||  ||||||||||| ||| ||||||              ||||  
             cc ucU  GUUGUUUCGCC GAC CUAUac              gcug g
cucucauaacgug  g   CA           C   A      -----------cac    c 

>cte-mir-2b (-37.50)   [cte-miR-2b:63-84]

--ucgug       ugu   --     u      augucauaguccccugu 
       accucug   ggc  gucaa guuggu                 g
       |||||||   |||  ||||| ||||||                 a
       uggagac   CCG  UAGUU CAACCG                 c
cucucua       uuu   AG     C      ACACUaucccggaugcg 

>cte-mir-2c (-41.40)   [cte-miR-2c:61-82]

u ug  uuu     u a     c        -      g   u    uuuu 
 g  uu   ggguu g ucggc uaucaagg uggcug gau uggg    u
 |  ||   ||||| | ||||| |||||||| |||||| ||| ||||     
 c  ga   uccag c aguuG AUAGUUUC ACCGAC CUA accc    a
g gu  -cu     u -     A        G      A   U    cguu 

>cte-mir-7 (-32.70)   [cte-miR-7:21-44]

--uaacccu    uu         -     CUA       U      -uau a 
         cugu  caugaugUG GAAGA   GUGAUUU AUUGUU    g a
         ||||  ||||||||| |||||   ||||||| ||||||    |  
         gaca  guacuacac cuucu   cacuaaa uaacaa    c a
aacauucau    -u         u     -ca       -      ccgu u 

>cte-mir-8 (-41.30)   [cte-miR-8:60-82]

gccagcc c        ug        -   c     c      -uu  c 
       g ggguugug  gacaucuu acc ggcgg auuaga   ga c
       | ||||||||  |||||||| ||| ||||| ||||||   || g
       c cucagcac  CUGUAGAA UGG CUGUC UAAUcu   cu g
--cugua -        cu        A   A     A      ucu  c 

>cte-mir-9 (-34.50)   [cte-miR-9:21-43]

--gcaugauaa    au    cU       U        G     uu  u 
           cccc  uuuu  CUUUGGU AUCUAGCU UAUGA  ua a
           ||||  ||||  ||||||| |||||||| |||||  || u
           gggg  aaaa  gaaacca uggaucga auacu  au u
caucuaaaaca    ac    uc       u        a     uc  u 

>cte-mir-10a (-32.02)   [cte-miR-10a:20-41]

uuc   g   -        -uU      UA UUC         c   aaucu 
   agu cuc cucaaugu   ACCCUG  G   CGGAUUUGU uug     c
   ||| ||| ||||||||   ||||||  |   ||||||||| |||     a
   uca gag gaguugua   uggggc  c   gcuuaaaca aac     g
--u   -   u        cuu      uc uua         -   gaaac 

>cte-mir-10b (-34.70)   [cte-miR-10b:19-42]

uuau      c     ccU       U     C   C A   a aaa 
    ugguaa guugc   UACCCUG CGAAC GAG G GUG g   u
    |||||| |||||   ||||||| ||||| ||| | ||| |    
    aucguu caacg   augggac guuug cuc c cac c   u
--uu      -     aac       -     a   - c   - cau 

>cte-mir-10c (-31.20)   [cte-miR-10c:27-49]

uggagaugaaaguca     c    uG  C        CC A       uuga u 
               caaug ccau  AC CUGUAGAA  G GCUUGUG    c a
               ||||| ||||  || ||||||||  | |||||||    | a
               guuau ggua  ug gacaucuu  c cgaacac    g u
-----------aauc     u    ca  u        au -       uaaa u 

>cte-mir-12 (-35.70)   [cte-miR-12:21-42]

----ugga    g g u     cc        A  U    UA    gua aa 
        agug c g cagag  UGAGUAUU CA CAGG  CUGA   c  g
        |||| | | |||||  |||||||| || ||||  ||||   |   
        ucac g c gucuc  gcucauaa gu gucc  gacu   g  c
ucaacuaa    - a u     uc        a  c    gg    aaa ca 

>cte-mir-29a (-35.60)   [cte-miR-29a:61-82]

aa    -    u    uc        cuc      a    uuaa   uuu 
  uggg gcuc ggaa  cugguuuu   uggugc uaga    cgc   g
  |||| |||| ||||  ||||||||   |||||| ||||    |||   a
  acuc uggg ccuU  GACUAAAG   ACCACG AUcu    gug   a
-c    g    u    UU        UUU      -    ----   uuu 

>cte-mir-29b (-39.00)   [cte-miR-29b:61-81]

--    -   c  c  -     c   c      ga     -----u    uu 
  ggag gcu gg gc cuggu uca auggug  uagag      uggc  c
  |||| ||| || || ||||| ||| ||||||  |||||      ||||   
  ccuc cgg cu cG GACUA AGU UACCAC  AUuuc      accg  g
cu    u   u  u  U     A   U      -G     caaguu    cg 

>cte-mir-31 (-40.70)   [cte-miR-31:21-41]

--gcgaucuca    a    ccA     G    U    U        u  a 
           gggc caga   GGCAA AUGU GGCA AGCUgauu ac c
           |||| ||||   ||||| |||| |||| |||||||| || u
           cccg gucu   ccguu uacg cugu ucgacugg ug c
cuacaaucaga    g    ccc     a    -    c        -  u 

>cte-mir-34 (-40.40)   [cte-miR-34:22-44]

cagccacugc         g U       U      C       -ga   a 
          uuguguuuc c GGCAGUG GGUUAG UGGUUGU   auu a
          ||||||||| | ||||||| |||||| |||||||   |||  
          aacauaaag g ccgucau ucgauc accaaca   uag u
-cuguauuaa         g u       c      -       aca   a 

>cte-mir-71 (-36.06)   [cte-miR-71:22-44]

aga a   c    gag       -          G   UG  A  uacacu 
   c aua agag   cuccaUG AAAGACAUGG UAG  AG UG      g
   | ||| ||||   ||||||| |||||||||| |||  || ||      u
   g uau ucuc   gagguac uuucuguacu auc  uc ac      c
aua c   -    -aa       c          -   gu  c  uaaucu 

>cte-mir-87a (-32.40)   [cte-miR-87a:61-82]

------------------------      u     u    g   aacgauuaaagaaaaua 
                        ccugaa uuuug cuca cca                 g
                        |||||| ||||| |||| |||                 u
                        GGACUU GAAAC GAGU Ggu                 u
uuccgucacgucaggcguuCGUGU      U     -    -   cuagggaggcgccuccc 

>cte-mir-87b (-46.10)   [cte-miR-87b:61-82]

-gg    g au      ug ug        c      a   aa    -   u 
   agug a  gucgcg  g  gcgccuga acuuug cuc  accu cuu u
   |||| |  ||||||  |  |||||||| |||||| |||  |||| ||| c
   uuac u  cagcgc  c  UGUGGACU UGAAAC GAG  UGga gag g
cua    g --      gu UA        U      -   --    u   u 

>cte-mir-92a (-47.40)   [cte-miR-92a:61-82]

uuucgu   u  u  uc  u            a      c     g   ucg 
      gcg gu gc  gg gccagaaggucg gauugg gcaau cug   u
      ||| || ||  || |||||||||||| |||||| ||||| |||   c
      ugc cg cg  uc cgguCUUCCGGC CUGAUC CGUUA Gac   c
---uuc   u  u  --  u            C      A     -   cua 

>cte-mir-92b (-36.00)   [cte-miR-92b:61-82]

cgc  g c    -u   -     a     c   -        g   -    aa 
   au g gucg  uga aucgg ggguc gga uggugcaa uug uuaa  c
   || | ||||  ||| ||||| ||||| ||| |||||||| ||| ||||   
   ua c cggc  acu uaguC UCCGG CCU GUCACGUU Aac gguu  a
--a  g -    uc   c     G     C   U        A   u    ga 

>cte-mir-92c (-38.20)   [cte-miR-92c:61-82]

--auuauuac      -ga  g      u      cg     cc   ucu   u 
          gucagu   ag aggucg gacaag  gcaau  ugg   ggc g
          ||||||   || |||||| ||||||  |||||  |||   |||  
          caguca   UC UCCGGC CUGUUC  CGUUA  acc   ucg a
cugcacucuc      gac  G      C      -A     --   ---   u 

>cte-mir-96 (-42.60)   [cte-miR-96:15-36]

-ugc        u  CUU     UG C     U     ca  ga g 
    ggauggug ga   GGCAC  G GGAAU AUCAc  gu  c c
    |||||||| ||   |||||  | ||||| |||||  ||  |  
    ccuaccac cu   ccgug  c ccuug uagug  ua  g a
cccu        u  acu     gu c     -     -c  -a a 

>cte-mir-100 (-39.50)   [cte-miR-100:21-42]

aaugucu   --a       g A       C  C   A      uuu   g 
       gcc   aguagcg g ACCCGUA AA CGA CUUGUG   ucu c
       |||   ||||||| | ||||||| || ||| ||||||   ||| g
       cgg   ucguugc u ugggcau uu gcu gaacac   aga a
ggcucuc   gug       g g       u  c   c      --c   a 

>cte-mir-125 (-42.40)   [cte-miR-125:22-43]

uaac  c   -  au      cUC  UG   CC           ag    c 
    ca ucg gc  cucgca   CC  AGA  CUAACUUGUGA  cuuu u
    || ||| ||  ||||||   ||  |||  |||||||||||  ||||  
    gu agc cg  gagcgu   gg  ucu  gauugagcgcu  gaaa a
-gcc  u   u  ag      cuc  gu   aa           -a    a 

>cte-mir-133 (-49.40)   [cte-miR-133:61-82]

------ucgua      g               acu  gu     ugug   u 
           gcgcac ccguagcugguugaa   gg  caaau    cgc g
           |||||| |||||||||||||||   ||  |||||    ||| c
           cgcgug ggUGUCGACCAACUU   CC  GUUua    gcg u
aucgcucaccg      -               -CC  UG     cuug   u 

>cte-mir-137 (-38.00)   [cte-miR-137:61-82]

aa  a   c   -     gag    g       ug     a      a  a 
  ga gaa gcu agguu   uacg guauucu  gguaa uaauau cc a
  || ||| ||| |||||   |||| |||||||  ||||| |||||| || g
  cu uuu cga uccaa   AUGC CAUAAGA  UCGUU AUugua gg a
ag  a   -   a     acG    A       GU     -      -  a 

>cte-mir-153 (-30.00)   [cte-miR-153:61-82]

------a    ucuuacuc   a     ca         gu   -     -  gaau 
       gccu        gga uacga  gcuuuugug  uau caauu gu    u
       ||||        ||| |||||  |||||||||  ||| ||||| ||     
       cgga        ucu augCU  UGAAAACAC  AUA GUUaa ca    c
accacua    -------c   a     AG         UG   C     a  gagu 

>cte-mir-182 (-33.50)   [cte-miR-182:21-42]

----uaaa  --     c   ccc  C    C       GA            cu 
        gg  cgcuc caa   uu UUGG ACUGGUA  AUUCACUgaauu  u
        ||  ||||| |||   || |||| |||||||  ||||||||||||   
        cc  gugag guu   aa aacu ugaccau  uaagugacuuga  u
cggcguua  aa     u   ---  a    c       --            au 

>cte-mir-184a (-38.10)   [cte-miR-184a:61-82]

cauca    --a   -    au      c  u             ccgu   a 
     cucg   ucg cacg  uccuua ca uucuuuguccggu    gug u
     ||||   ||| ||||  |||||| || |||||||||||||    ||| u
     gagc   agc gugu  GGGAAU GU AAGAGGCAGGUca    uac a
--ucc    acc   a    cC      A  C             ---c   u 

>cte-mir-184b (-30.20)   [cte-miR-184b:58-78]

-uua    a  u    uuc        c  g       u  u  cug 
    ugau ca cacg   ccuuguca uu uucgucc gu gg   c
    |||| || ||||   |||||||| || ||||||| || ||   g
    acua gu gugu   GGGAUAGU AA AGGCAGG ca uc   u
gugc    g  -    ccC        C  G       U  c  uuu 

>cte-mir-190 (-46.70)   [cte-miR-190:22-45]

-accc  u   u  u   g   A              AUU      u  cuc 
     ac gcc cc cuc gca GAUAUGUUUGAUAU   UGGUGG gc   u
     || ||| || ||| ||| ||||||||||||||   |||||| ||    
     ug cgg gg gag ugu cuguacaaacuaua   accacc ug   u
ucaca  u   u  -   g   a              --g      -  aca 

>cte-mir-193 (-41.60)   [cte-miR-193:52-73]

uga        aagac    -u       au     cg   gu 
   cguggcau     gagg  cuugacg  ccagu  ggg  u
   ||||||||     ||||  |||||||  |||||  |||  u
   gcaccgua     CUCC  GAACUGC  GGUCA  ccu  g
ccg        --acC    CU       CC     Au   ga 

>cte-mir-210 (-44.10)   [cte-miR-210:59-81]

------ac        c  -ug       -   u          aa  -ug  c 
        ggcgugug gu   gucauug cgc acgcacaaag  ga   cg u
        |||||||| ||   ||||||| ||| ||||||||||  ||   || g
        cugcacgc cg   CAGUGAC GUG UGCGUGUUUc  cu   gu c
cuucguca        a  UAA       A   -          -a  uua  u 

>cte-mir-216a (-31.10)   [cte-miR-216a:9-30]

uaa     UA          G      A   u  ugg 
   uuguc  AUCUCAGUUG UAAUUC GAg gc   a
   |||||  |||||||||| |||||| ||| ||    
   aacag  uagggucgac auuagg cuc ug   a
aua     gc          a      -   u  cuu 

>cte-mir-252a (-34.44)   [cte-miR-252a:21-42]

-augcuc     uugcca   C        AGU  C        uuccuu 
       gcuca      aug UAAGUACU   GC GCAGGAGg      g
       |||||      ||| ||||||||   || ||||||||       
       cgagu      uau auucguga   ug cguccucc      u
uccuuua     uuacac   a        gcu  u        ccaacu 

>cte-mir-252b (-37.30)   [cte-miR-252b:21-42]

----ugcauc    -    aca   C          U CC        uacg 
          ucac ugug   gug UAAGUAGUAG G  GCAGGUAa    u
          |||| ||||   ||| |||||||||| |  ||||||||    u
          agug gcac   cac auucgucguc c  cguccauu    a
uacaacaaua    c    gaa   a          u -a        uagu 

>cte-mir-278 (-40.00)   [cte-miR-278:61-82]

------------      ---        uu  uu u g     a   guc      u 
            ucgccc   acgagcga  gu  c c ugauc cgu   uuugua c
            ||||||   ||||||||  ||  | | ||||| |||   ||||||  
            ggcggg   UGCUUGCU  CA  G G GCUag gcg   aaacau a
uucaauuaggcg      gCU        UU  GG U -     -   gua      a 

>cte-mir-279 (-37.90)   [cte-miR-279:61-81]

----c   uc       c    a   gc        a    c   u   gau 
     guu  gcugucg cuug aug  uguggauc aguc aug uaa   u
     |||  ||||||| |||| |||  |||||||| |||| ||| |||   u
     cga  cggcggu ggaC UAC  ACACCUAG UCAG Uac guu   c
cuucc   -u       u    C   UC        A    -   u   aag 

>cte-mir-281 (-38.00)   [cte-miR-281:62-83]

acu    gauucaauc  - u       c         -  g     aaac    u 
   gcag         gg c ggucguu aggggggca cu caugg    gcua c
   ||||         || | ||||||| ||||||||| || |||||    ||||  
   cguu         cc g ccagcaA UUCUCUCGU GA GUACU    ugau c
--g    ------aau  a u       U         U  G     --GU    g 

>cte-mir-315 (-39.20)   [cte-miR-315:21-43]

uca   cc   -    -a   cU         UG  CA       -c    u 
   cuu  ggc gucc  cac  UUUGAUUGU  CU  GAAAGCC  uuug u
   |||  ||| ||||  |||  |||||||||  ||  |||||||  |||| u
   gag  ccg uagg  gug  gaacuaaca  ga  cuuucgg  gagc a
--c   ua   a    aa   uu         gu  -a       uu    u 

>cte-mir-317 (-39.20)   [cte-miR-317:61-85]

cggaaggaga  c   -     c   c       --    -  g   c     u  a 
          ag guc gagcg agg aagagau  cacu gc gug ucaca gu g
          || ||| ||||| ||| |||||||  |||| || ||| ||||| ||  
          uc cag cucgc ucu UUCUCUA  GUGG CG CAC AGUgu ca c
---------g  -   u     u   U       UG    U  A   A     -  c 

>cte-mir-365 (-34.30)   [cte-miR-365:61-82]

cuucu   ccca     u u           a              gaca 
     uca    ucaga a auucgggguuu aaaggguauuuuuu    u
     |||    ||||| | ||||||||||| ||||||||||||||    u
     agu    agucu u uGGGUCCUAAA UUUCCCGUAAGagg    c
-cuac   -ccg     c c           C              ucag 

>cte-mir-375 (-39.40)   [cte-miR-375:61-82]

cauuaccagua       u       a      aa   u       u  gu 
           gcaucgg uguuagc ugggcc  acg gcaagac gu  u
           ||||||| ||||||| ||||||  ||| ||||||| ||   
           cgugguu acaAUUG GCUCGG  UGC UGUUUug cg  u
----ucuauug       c       C      CC   U       u  ag 

>cte-mir-745a (-37.30)   [cte-miR-745a:47-68]

-gag   -  u             u     a    -u  a 
    gac ag acggcucuuuauc gguag cuug  gc a
    ||| || ||||||||||||| ||||| ||||  ||  
    cug uC UGUCGAGAAAUGG CCGUC GAac  cg a
aacg   c  -             U     -    cc  c 

>cte-mir-745b (-28.30)   [cte-miR-745b:44-65]

u g    uu   u    c c     cuaa    ucu 
 g ugug  gcc cuuc c uggca    uccc   g
 | ||||  ||| |||| | |||||    ||||    
 c acaU  CGG GAAG G ACCGU    AGgg   c
a a    GU   -    U A     --CG    uuc 

>cte-mir-750 (-49.00)   [cte-miR-750:59-81]

-------    -   c              -        ca     gg       
       ccag gug gaugaguuggagga uugggucu  gcauu  acgagc 
       |||| ||| |||||||||||||| ||||||||  |||||  ||||| g
       gguc cac cuACUCGACCUUCU AAUCUAGA  Cguga  uguuug 
uccucca    u   c              C        -C     gg       

>cte-mir-981 (-34.80)   [cte-miR-981:54-76]

aug         uu         -  gu uu      - -  ac 
   gucuuucaa  cggguuucg cg  a  cgaaca c gu  c
   |||||||||  ||||||||| ||  |  |||||| | ||  a
   uagaaaguU  GUCCAAAGC GC  U  GCUUgu g cg  a
uga         UC         U  UG -U      u a  au 

>cte-mir-1175 (-33.50)   [cte-miR-1175*:12-33] [cte-miR-1175:49-71]

-------ugcu     u    -    A     UU        g  cu 
           ugaga uAGU GGAG GAGUU  AUCUCAUc ag  u
           ||||| |||| |||| |||||  |||||||| ||   
           acucu GUCA CCUC CUCAA  UAGAGUgg uu  g
guuuaagucac     C    A    -     CU        g  ua 

>cte-bantam (-31.89)   [cte-bantam:61-83]

uca a  --aagacuu      c        u uu      uc    u   u 
   g gc         gcgaga ugguuuuc c  uggucu  caga uuu a
   | ||         |||||| |||||||| |  ||||||  |||| ||| u
   c cg         cgcuCU AUCAAAAG G  ACUAGA  GUcu aag u
-ga -  cauuacagu      A        U UU      --    u   g 

>cte-let-7 (-40.92)   [cte-let-7:21-41]

cccccug   -    u    uU   G   U            aga   acauc 
       gcu uacc ccag  GAG UAG AGGUUGUAUAGU   guu     a
       ||| |||| ||||  ||| ||| ||||||||||||   |||     c
       cga augg gguc  uuc auc uccgacauguca   cag     u
---guca   c    -    cu   g   u            -ag   acaaa 

>cte-mir-33 (-48.50)   [cte-miR-33:21-41]

--------   aua    uug         -         UU         -  aag 
        gga   cgcu   cacauugGU GCAUUGUAG  GCAUUGCAu gg   u
        |||   ||||   ||||||||| |||||||||  ||||||||| ||    
        ccu   gcgg   guguaacua cgugacguc  cgugacgug cc   u
accaucau   ---    --a         a         cu         g  aac 

>cte-mir-79 (-34.50)   [cte-miR-79:62-83]

cugcaugauaa    au    cu       u        g     uu  u 
           cccc  uuuu  cuuuggu aucuagcu uauga  ua a
           ||||  ||||  ||||||| |||||||| |||||  || u
           gggg  aaaA  GAAACCA UGGAUCGA AUacu  au u
--ucuaaaaca    ac    UC       U        A     uc  u 

>cte-mir-124 (-47.50)   [cte-miR-124:61-81]

gac uu  uc     -a u             g     gu       -  ga 
   g  gu  uggcg  c ucuuggcguucac gcgug  ccuuggu gu  c
   |  ||  |||||  | ||||||||||||| |||||  ||||||| ||  u
   c  cg  gccgc  g agaACCGUAAGUG CGCAC  GGAAUua ca  a
--c uc  uc     ca c             G     --       a  ac 

>cte-mir-219 (-31.94)   [cte-miR-219:19-39]

-----cagaca     -    c      U    A      A      uucacu 
           gucuu uuag auUGAU GUCC AACGCA UUCUug      u
           ||||| |||| |||||| |||| |||||| ||||||       
           cggaa gauc uaacua cagg uugugu aagaac      c
ccaacacauga     c    c      -    c      c      cucuug 

>lgi-mir-1 (-26.92)   [lgi-miR-1:56-77]

guau           ca         c    u  c     uuuua 
    cuguaugcaga  acauacuuc uugc au ccaua     u
    |||||||||||  ||||||||| |||| || |||||     a
    gguauguguuu  UGUAUGAAG AAUG UA GGUau     u
uuuu           UA         A    -  A     cguaa 

>lgi-mir-2c (-36.20)   [lgi-miR-2c:59-81]

acauuaccggua          u c        -             uuaa 
            uuuauggaga c cauuaaag ugguugugaugug    a
            |||||||||| | |||||||| |||||||||||||     
            aaauauuucu G GUAGUUUC ACCGACACUAUac    u
----acuaaaac          U A        G             uacu 

>lgi-mir-2d (-35.80)   [lgi-miR-2d:61-83]

uaucugaaa      u u c   cu    -      -     a      -   a 
         guauuu g c cug  cuga ccaagu ggcug gauaag uuu u
         |||||| | | |||  |||| |||||| ||||| |||||| |||  
         uauaaa c g gac  GACU GGUUCG CCGAC CUAUuc aag u
-----caaa      - u u   uU    A      U     A      u   u 

>lgi-mir-7 (-27.40)   [lgi-miR-7:21-44]

auaaccu   u   c        -    CUA       U     Uu    uu 
       auc acc uggucUGG AAGA   GUGAUUU GUUGU  uaau  c
       ||| ||| |||||||| ||||   ||||||| |||||  ||||   
       uag ugg guuagacc uucu   cacuaaa uaaca  auua  a
acaauuc   u   u        c    -ua       -     --    ug 

>lgi-mir-8 (-30.20)   [lgi-miR-8:61-83]

gagagaa       cug   -c      -    u    c      -uu   a 
       acgaauu   gug  caucuu acuu acag auuaga   ugu c
       |||||||   |||  |||||| |||| |||| ||||||   |||  
       ugcuuga   cac  GUAGAA UGGA UGUC UAAUcu   aca g
----aag       -aa   CU      A    C    A      uuu   a 

>lgi-mir-9 (-37.60)   [lgi-miR-9:21-43]

--a    aaag u                 U        G      ugaaa 
   agug    c cuguuuuugUCUUUGGU AUCUAGCU UAUGAu     u
   ||||    | ||||||||||||||||| |||||||| ||||||      
   ucau    g gguaaaaacggaaacca uggaucga auauua     a
auc    auca u                 u        a      caaag 

>lgi-mir-10 (-34.50)   [lgi-miR-10:21-42]

gaaua   --u     --    u      U     UC          u  ga 
     uug   gccuu  uacg uUACCC GUAGA  CGAAUUUGUg au  a
     |||   |||||  |||| |||||| |||||  |||||||||| ||   
     aac   uggag  gugu aguggg cguuu  gcuuaaacau ua  a
acuaa   uuu     cu    u      -     uu          c  ac 

>lgi-mir-12 (-31.90)   [lgi-miR-12:21-42]

-----ugaccau   a    ug cgU      U   UC         ---  a 
            gac ucau  c   GAGUAU ACA  AGGUACUGA   gg a
            ||| ||||  |   |||||| |||  |||||||||   || u
            cug agua  g   cuuaua ugu  uccaugacu   uc g
ccacgacccuuu   c    gu aau      c   cu         ggc  u 

>lgi-mir-29 (-24.00)   [lgi-miR-29:61-82]

uucagaua   ua     ac    -u   c         a   a    uuca 
        ugu  ccauu  gggg  cug uuucaaaug ugu uaga    u
        |||  |||||  ||||  ||| ||||||||| ||| ||||    a
        aca  gguag  cucU  GAC AAAGUUUAC ACG AUcu    a
---caacc   -c     aa    UU   U         C   -    ccuu 

>lgi-mir-31 (-38.60)   [lgi-miR-31:21-41]

aua    ----u          cuA     G   UU           ---g   u 
   augu     ugaguccaga   GGCAA AUG  GGCAUAGCUga    uca a
   ||||     ||||||||||   ||||| |||  |||||||||||    |||  
   uacg     guucggguuu   ucguu uac  cugugucgacu    agu u
---    uuguu          cua     a   -u           acca   a 

>lgi-mir-33 (-42.80)   [lgi-miR-33:21-42] [lgi-miR-33*:57-79]

----c  acuaag           -G          U          uuguu 
     ga      caguugugaug  UGCAUUGUAG UGCAUUGCAU     a
     ||      |||||||||||  |||||||||| ||||||||||      
     cu      guuagcauuAC  ACGUGACGUC ACGUAACGua     u
aucca  aucaaa           AA          U          uuaaa 

>lgi-mir-34 (-33.10)   [lgi-miR-34:22-44]

----aa  gag  g    gg   u U          U   C    A   caug 
      ca   ug gugu  uuc g GGCAGUGUGG UAG UGGU GUu    a
      ||   || ||||  ||| | |||||||||| ||| |||| |||     
      gu   ac cgca  aag c ccguuacauc auc acca caa    u
cagcaa  aaa  a    -a   c -          u   -    a   aauu 

>lgi-mir-67 (-33.20)   [lgi-miR-67:47-69]

ucu  g     cu      c  -          uccuc 
   gu ugucc  guucau gu gguugugaug     u
   || |||||  |||||| || ||||||||||      
   cg aCAGG  UAAGUA CG CCAACACUac     u
gcu  g     AG      -  U          uaagu 

>lgi-mir-71 (-42.50)   [lgi-miR-71:22-44]

--accaugcag         u  UG       A             auuca 
           cagaaaucu ug  AAAGACA GGGUAGUGAGAUG     a
           ||||||||| ||  ||||||| |||||||||||||      
           guuuuuaga ac  uuucugu cucaucauucuac     u
aacuacuauag         u  gu       -             cauaa 

>lgi-mir-79 (-37.60)   [lgi-miR-79:61-82]

ga    aaag u                 u        g      ugaaa 
  agug    c cuguuuuugucuuuggu aucuagcu uaugau     u
  ||||    | ||||||||||||||||| |||||||| ||||||      
  ucau    g gguaaaaaCGGAAACCA UGGAUCGA AUAuua     a
-c    auca u                 U        A      caaag 

>lgi-mir-87 (-34.80)   [lgi-miR-87:61-82]

uuaauaacuug       u    g ug           a    aa    aau 
           agguuug cuga g  ccugaaauuuu gcuc  accu   a
           ||||||| |||| |  ||||||||||| ||||  ||||   a
           uucaagu gacU U  GGACUUUGAAA CGAG  UGga   u
---ucuauaua       c    A GU           -    --    aga 

>lgi-mir-92 (-33.10)   [lgi-miR-92:60-81]

-cauaa      aaga ga  u        u    uu      a   agaa 
      ugaaga    u  gu gcaggucg gaua  ugcaau ugg    g
      ||||||    |  || |||||||| ||||  |||||| |||     
      acuucu    a  cg CGUCCGGC CUGU  ACGUUA acu    a
aacucc      ---g aa  u        C    UC      A   aaua 

>lgi-mir-96a (-29.00)   [lgi-miR-96a:9-30]

ugc    aC       UG C G         g      
   uccu  UUGGCAC  G G AAUAAUCAc ugaua 
   ||||  |||||||  | | ||||||||| |||| a
   agga  aacugug  c c uuguuagug acuaa 
uuu    aa       gu - a         -      

>lgi-mir-96b (-24.14)   [lgi-miR-96b:6-28]

caa            U   GA      Gguaua 
   uuAUUUGGCACU GUG  AUAAUC      a
   |||||||||||| |||  ||||||       
   aauaaaccgugg cac  uauuag      a
gcc            c   -a      aacaau 

>lgi-mir-100 (-35.30)   [lgi-miR-100:21-42]

---au   --uga            -A    G    UC   A      a  a 
     uag     cuaguuaauaua  ACCC UAGA  CGA CUUGUG ua a
     |||     ||||||||||||  |||| ||||  ||| |||||| || a
     auc     gaucgguuauau  uggg aucu  guu gaacgc gu u
uagac   uaugg            cc    g    uu   c      a  c 

>lgi-mir-124 (-38.50)   [lgi-miR-124:61-81]

aauccaaaa     g       a            aaa        -  aa 
         uggcg aucuguu guguucacugug   gccuuggu gu  u
         ||||| ||||||| ||||||||||||   |||||||| ||  u
         acugc uggauaA CGUAAGUGGCGC   CGGAAUua ca  a
ucuucuaua     -       C            --A        u  aa 

>lgi-mir-133 (-31.20)   [lgi-miR-133*:8-30] [lgi-miR-133:49-70]

ugu               AUU         --ua  aa 
   cuguAGCUGGUUGAA   GGGCCAAAU    ga  a
   |||||||||||||||   |||||||||    ||   
   gaUGUCGACCAACUU   CCUGGUUua    cu  a
guu               -CC         cgaa  gg 

>lgi-mir-137 (-34.30)   [lgi-miR-137:61-82]

uuugacua     -u   c  c    a       ug   g        uau 
        gagcc  ggc ga uacg guauucu  ggu aauaauac   a
        |||||  ||| || |||| |||||||  ||| ||||||||   u
        uuugg  ccg uu AUGC CAUAAGA  UCG UUAUugug   a
-cggcacc     uu   -  A    A       GU   -        cga 

>lgi-mir-153 (-40.50)   [lgi-miR-153:61-82]

-   cucuaac             gca            ua      - ug   
 ggg       uucauuuucccgg   gcuuuugugauu  gcaauu g  ac 
 |||       |||||||||||||   ||||||||||||  |||||| |  | u
 ccu       agguggaggggCU   UGAAAACACUGA  CGUUaa c  uu 
a   ---aaca             -AG            UA      a gu   

>lgi-mir-182 (-28.52)   [lgi-miR-182:21-43]

---------    aau     aa    cuC    C      A    U     cuaaa 
         auug   ugcug  acug   UUGG ACUGGU GAAU CACUG     a
         ||||   |||||  ||||   |||| |||||| |||| |||||     a
         uaac   acgau  uggc   aacc uggcca cuua gugac     a
gaaacuaca    ---     --    uca    u      -    -     cucau 

>lgi-mir-183 (-40.00)   [lgi-miR-183:21-43]

---cguaaa    u cg      A          U   AU      ug  aa 
         ccgg c  acagug AUGGCACUGG AGA  UCACGG  ua  c
         |||| |  |||||| |||||||||| |||  ||||||  ||  c
         ggcu g  uguuac uacuguggcc ucu  ggugcc  gu  u
ucgacugaa    - au      a          u   --      uu  gu 

>lgi-mir-184 (-31.40)   [lgi-miR-184:61-82]

gccaauuuaau     --     uu         c  g       -cg   aa 
           aucuu  ucacg  uccuuguca uu uucgucu   ucu  u
           |||||  |||||  ||||||||| || |||||||   |||  a
           uagag  ggugu  GGGAAUAGU AA AGGCAGG   aga  u
-----cgacuu     ug     uC         C  G       Uca   aa 

>lgi-mir-190 (-43.46)   [lgi-miR-190:22-43]

     uuu  u         -uA           UA          uuaaug 
aagag   gc gaucucugu   GAUAUGUUUGA  UACUUGGUgg      g
|||||   || |||||||||   |||||||||||  ||||||||||      u
uuuuc   ug cuggagaca   cuguacaaacu  augaaccacc      u
     ---  u         uca           --          ugaaaa 

>lgi-mir-193 (-29.50)   [lgi-miR-193:54-75]

aug     g      cug          uu   ua    uac  a 
   aacuu uucuca   gggauuuugu  guc  uaug   ug u
   ||||| ||||||   ||||||||||  |||  ||||   ||  
   uugag aggggu   CCCUAAAACG  CGG  AUac   ac a
-aa     -      CAA          UC   UC    --u  a 

>lgi-mir-216a (-31.50)   [lgi-miR-216a:15-37]

ucu                  A  U       C    uucu   aaa 
   ugauguuugugUAAUCUC GC GGUAAUU UGAG    aau   u
   |||||||||||||||||| || ||||||| ||||    |||    
   auuauaaauauauuagag cg ucauuga acuc    uua   a
ugc                  c  u       -    --uu   auc 

>lgi-mir-216b (-26.10)   [lgi-miR-216b:5-27]

ucug          UG U         uuac 
    UAAUAUCAGC  G AAUCCUGAG    u
    ||||||||||  | |||||||||    g
    auuauaguug  u uuaggacuc    a
acaa          gu -         uauu 

>lgi-mir-242 (-25.10)   [lgi-miR-242:17-37]

gac  g          -U   G    C UU         uaa 
   ag aauaagguuu  UGC UAGG G  GUGCACAGu   a
   || ||||||||||  ||| |||| |  |||||||||   u
   uc uuauuuuaaa  acg aucc c  uauguguua   a
aga  a          cu   a    c cu         uag 

>lgi-mir-252 (-33.60)   [lgi-miR-252:21-41]

---aacaaa     aaguaa   C       U  U C        --    u 
         gaucg      aua UAAGUAC GG G CGCGGGAg  guua a
         |||||      ||| ||||||| || | ||||||||  ||||  
         cuagc      uau auucgug uc c gcguccuc  uagu a
cuacaauaa     gaacug   c       u  u a        au    u 

>lgi-mir-278 (-28.90)   [lgi-miR-278:61-82]

gaaacuauac     uau  u  cu     g     u uu    a   guaa 
          agcuu   gu ac  gcgag gaagg u  cgcc auc    a
          |||||   || ||  ||||| ||||| |  |||| |||     
          ucgga   cg ug  UGCUU CUUUC A  GUGG Uag    c
-ugcaaagca     --u  -  UC     G     - GG    C   aaau 

>lgi-mir-279 (-35.50)   [lgi-miR-279:61-82]

ggca  gg  aa   -auaaa       u    ag      g    --u  a 
    ga  uu  ccg      uggguga ugug  ucuggu caug   uc u
    ||  ||  |||      ||||||| ||||  |||||| ||||   || g
    cu  aa  ggc      ACCUACU ACAC  AGAUCA GUac   ag a
--ua  aa  ag   gaagac       C    CU      -    ugc  u 

>lgi-mir-281 (-34.60)   [lgi-miR-281*:26-46] [lgi-miR-281:61-82]

uuucaagauucaa      -a  a           --     C      u gaa 
             gaucaa  cg ugAAGGGAGCA  UCUGU GACAGU u   u
             ||||||  || |||||||||||  ||||| |||||| |    
             cugguu  gc AUUUCUCUCGU  AGGUA CUGUca a   u
-----cacuuaaa      gg  c           UG     -      u aau 

>lgi-mir-315 (-34.32)   [lgi-miR-315:21-43]

-auuaa   u      -   aaUU             A  AA    uaaug 
      cau aucuuc uca    UUGAUUGUUGCUC GA  GCCg     u
      ||| |||||| |||    ||||||||||||| ||  ||||     u
      gua uggagg agu    aacuaacaacggg cu  cggc     u
acugaa   -      u   aauc             -  cg    cucaa 

>lgi-mir-317 (-47.30)   [lgi-miR-317:61-84]

aaga    aua        -              --             uuuu 
    gaag   acucuguu guggaggauaccau  guuguguuuacag    g
    ||||   |||||||| ||||||||||||||  |||||||||||||    a
    cuuu   ugagacga uaUCUUCUAUGGUG  CGACACAAGUguu    a
---a    --a        a              GU             uaca 

>lgi-mir-745a (-26.30)   [lgi-miR-745a:40-60]

-uau    c    u        a    auca 
    cggc cuuc ucagguag cuug    u
    |||| |||| |||||||| ||||    u
    GUCG GAAG AGUCCGUC GAac    u
acaU    A    U        -    aaac 

>lgi-mir-745b (-34.10)   [lgi-miR-745b:52-73]

aua    c   u            g  u     a  guaau 
   gacu auc uagcucuucauu gg cagcu uc     u
   |||| ||| |||||||||||| || ||||| ||      
   uugg uaG GUCGGGAAGUAA CC GUCGA ag     u
aaa    u   U            A  -     g  aaaga 

>lgi-mir-750 (-29.50)   [lgi-miR-750:61-82]

--gguaau   u        uc         -  c  cc      uu    c 
        aca guuucagu  guuggaaga uu ga  uugaca  guuc a
        ||| ||||||||  ||||||||| || ||  ||||||  ||||  
        ugu uagaguuA  CGACCUUCU AA CU  GACugu  uaag u
caaaaauu   u        CU         C  U  -A      -u    a 

>lgi-mir-981 (-28.30)   [lgi-miR-981:43-65]

--uuuga         -    uu       --   u 
       cggguuucg cgau  gcgaaca  guc a
       ||||||||| ||||  |||||||  ||| a
       GUCCAAAGC GCUG  UGCUUgu  uag c
gaauUCC         A    -U       gu   g 

>lgi-mir-1175 (-30.90)   [lgi-miR-1175*:11-32] [lgi-miR-1175:50-72]

-------uguucaa      -    A     UU         cucaa 
              uguAGU GGAG GAGUU  AUCUCAUcu     a
              |||||| |||| |||||  |||||||||      
              aCGUCA CCUC CUCAA  UAGAGUaga     c
uuuguccacuuuga      A    -     CU         caaaa 

>lgi-let-7 (-36.40)   [lgi-let-7:21-42]

aaucu       a     auU   G   U             gagaauua a  ua 
     uuuguga uucgg   GAG UAG AGGUUGUAUAGUU        c cc  g
     ||||||| |||||   ||| ||| |||||||||||||        | ||   
     aaacacu gaguc   uuc auc uccaacaugucaa        g gg  a
----c       -     ccu   g   u             -------- c  uc 

>nve-mir-100 (-35.60)   [nve-miR-100:16-37] [nve-miR-100*:48-69]

uaa   - a    auc  C       UC   A       ag 
   ucg c cagu   GA CCGUAGA  CGA CUUGUGg  u
   ||| | ||||   || |||||||  ||| |||||||  u
   agc g guca   CU GGCAUCU  GCU GGACAcc  u
uaa   u c    aaA  A       UU   C       ac 

>sko-mir-1 (-32.12)   [sko-miR-1:58-79]

gagg     -uuu    a         u     a        cuuau 
    ucucg    acag acguacuuc uuaua uuccauac     u
    |||||    |||| ||||||||| ||||| ||||||||     c
    agggc    uguU UGUAUGAAG AAUGU AAGGUaug     c
-aaa     ugau    A         U     -        ucuac 

>sko-mir-7 (-30.00)   [sko-miR-7:16-38]

gugu  c        -   A     A        G     gucac 
    ca auaccaua UGG AGACU GUGAUUUU UUGUu     u
    || |||||||| ||| ||||| |||||||| |||||      
    gu ugugguau acc ucuga cacuaaaa aacaa     g
----  u        u   g     -        -     accuu 

>sko-mir-200 (-39.90)   [sko-miR-200:61-83]

gaugc    -    u  a         -     c     c      -cu  u 
     gaug ugaa uc auugacauc uuacc gacag auuaga   ug u
     |||| |||| || ||||||||| ||||| ||||| ||||||   || a
     cuac acuu ag uaaUUGUAG AAUGG CUGUC UAAUcu   ac u
---cu    c    u  a         U     U     A      cuu  g 

>sko-mir-9 (-29.20)   [sko-miR-9:12-32]

c   c     -c        U        G     g   a 
 ucu guuuu  UCUUUGGU AUCUAGCU UAUga ugu c
 ||| |||||  |||||||| |||||||| ||||| ||| a
 aga caaaa  agaaacca uggaucga auauu aca u
-   -     ac        u        a     -   g 

>sko-mir-10 (-33.10)   [sko-miR-10:20-42]

---auaua    -  c a    -c    CU     UC           uacg 
        ucuc ca c accu  UACC  GUAGA  CGAAUUUGUGg    u
        |||| || | ||||  ||||  |||||  |||||||||||    a
        ggag gu g ugga  gugg  caucu  gcuuaagcacu    c
acaacaca    c  c a    ca    -c     uu           uuua 

>sko-mir-29a (-41.10)   [sko-miR-29a:61-82]

agaaugu      a           gc     u      a     uacac 
       uguuau augggagacug  uuuau uggugc uggag     u
       |||||| |||||||||||  ||||| |||||| |||||      
       acagug uaccuUUUGAC  AAGUA ACCACG AUcuc     u
-----uu      a           UA     U      -     cuacu 

>sko-mir-29b (-37.50)   [sko-miR-29b:61-82]

ugaac   c   c  u      -           c    ga      ccau 
     ucu uga cu aggaac cugauuucaaa ggug  uagauu    a
     ||| ||| || |||||| ||||||||||| ||||  ||||||     
     aga acu ga uccuUG GACUAAAGUUU CCAC  AUcuga    g
----a   -   u  -      U           A    -G      caac 

>sko-mir-31 (-33.00)   [sko-miR-31:21-42]

--aaaauuc      uu  -u  A     G   UU          ---u   g 
         gcaaau  ag  gg GGCAA AUG  GGCAUAGCUG    uuc a
         ||||||  ||  || ||||| |||  ||||||||||    |||  
         uguuug  uc  uc ccguu uac  cugugucgac    aag u
cacugccac      uu  uu  -     a   uc          ugac   u 

>sko-mir-33 (-41.60)   [sko-miR-33*:58-79]

--  acau  -c   u       -g          uu        ---      
  gg    ug  uug cucugug  ugcauuguag  gcauugca   uguac 
  ||    ||  ||| |||||||  ||||||||||  ||||||||   |||| g
  cc    ac  gac gagacAC  ACGUGACGUC  CGUGACgu   acaua 
ua  acuu  ca   c       AA          UU        cuc      

>sko-mir-34 (-34.42)   [sko-miR-34:22-43]

--gacuuacua    c   a    -     U        C      uuaau 
           uaug cac gugU GGCAG GUGGUUAG UGGUUG     u
           |||| ||| |||| ||||| |||||||| ||||||     a
           auac gug caua ccguc uacuaguc accaac     u
ccuacuaacca    a   a    u     -        u      uuuaa 

>sko-mir-71 (-37.00)   [sko-miR-71:22-43]

gcauuac     -      u  -U  A    AC            a  gua 
       uggug gguguu ug  GA AGAC  AGGUAGUGAGAU gu   u
       ||||| |||||| ||  || ||||  |||||||||||| ||   g
       accgu ccacga ac  cu ucug  uucaucgcucua ca   g
-ucuaaa     u      u  cu  c    gu            -  aau 

>sko-mir-79 (-37.80)   [sko-miR-79:61-83]

ccga   u     -   c     -c        u        g     g   a 
    auu uuggc ucu guuuu  ucuuuggu aucuagcu uauga ugu c
    ||| ||||| ||| |||||  |||||||| |||||||| ||||| ||| a
    uag gaccg aga caaaa  AGAAACCA UGGAUCGA AUAuu aca u
----   u     u   -     AC        U        A     -   g 

>sko-mir-92a (-33.80)   [sko-miR-92a:61-82]

c     aca  u   gg      c     a a     aa       -  ga 
 ucaua   ug cug  gacgcu aggcc g auaag  caauguu gu  u
 |||||   || |||  |||||| ||||| | |||||  ||||||| ||  g
 gguau   ac gac  uugugA UCCGG C UGUUC  GUUAUaa ca  a
c     --c  u   -a      A     C C     AC       a  ac 

>sko-mir-92b (-33.00)   [sko-miR-92b:60-81]

agcuuuuuucuuu   cg    gua    ua    uuu          uuc 
             acc  agcu   aggu  ggac   ugcaauguug   u
             |||  ||||   ||||  ||||   ||||||||||    
             ugg  ucgg   UCCG  CCUG   ACGUUAUaau   c
---caacauguau   aa    uCG    GC    UUC          cug 

>sko-mir-92c (-32.80)   [sko-miR-92c:61-82]

accauggauac       -c    g    ua    uuu         uugau 
           ugguugg  caug aggu  ggac   ugcaauauu     a
           |||||||  |||| ||||  ||||   |||||||||      
           aucaacu  guaU UCCG  CCUG   ACGUUAUaa     u
----acauuca       uu    G    GC    CUC         uuuau 

>sko-mir-96 (-30.20)   [sko-miR-96:5-25]

----------------------   u    G        -CA        ucuu 
                      ccu UUUG CACUAGCA   UUUUGCug    u
                      ||| |||| ||||||||   ||||||||    u
                      gga gaac gugaucgu   aaagcgac    u
ggccuacuuuccagcuacugca   c    g        aug        uaua 

>sko-mir-100 (-34.20)   [sko-miR-100:21-42]

--acaac  -    -   u     A     U    C   A      -uua a 
       ug gcug gac gugua ACCCG AGAU CGA CUUGUG    g g
       || |||| ||| ||||| ||||| |||| ||| ||||||    |  
       ac cggu cug cguau ugggu ucua gcu gaacgc    c u
cuagcga  a    u   c     c     c    c   c      ucgg u 

>sko-mir-124 (-32.66)   [sko-miR-124*:22-43] [sko-miR-124:61-82]

ggauggu      -c      aA        A   GU       guucca 
       uauguc  uguucu  GUGUUCAC GCG  CCUUGAU      c
       ||||||  ||||||  |||||||| |||  |||||||      a
       auauag  acaagA  CGUAAGUG CGC  GGAAUua      c
-uaaaau      aa      AC        G   AC       acgcaa 

>sko-mir-125 (-41.70)   [sko-miR-125:22-43]

--cu    au              CC     A  -            aauua 
    cuau  guguauuaccuaaU  CUGAG CC CUAACUUGUGAg     c
    ||||  ||||||||||||||  ||||| || ||||||||||||      
    gaua  uacgugguggguua  gauuc gg gauuggacacuu     c
caac    cu              -a     -  u            acgac 

>sko-mir-133 (-39.70)   [sko-miR-133:61-82]

ugcaa     a   g      a       aaauc  a        a   u 
     uugag ugu gugcug agcuggu     gg accaaauc uau a
     ||||| ||| |||||| |||||||     || |||||||| ||| c
     aacuu acg uacgaU UCGACCA     CC UGGUUuag gua a
aacca     -   g      G       ACUUC  C        -   a 

>sko-mir-137 (-38.30)   [sko-miR-137:61-82]

aagggaauca   -ac ug     g   c            u       -  u 
          ugc   g  ccggu acg guauucucgggu gauaaua ca a
          |||   |  ||||| ||| |||||||||||| ||||||| ||  
          acg   c  ggucG UGC CAUAAGAGUUCG UUAUugu gu c
----acgaca   auc gu     A   A            -       a  c 

>sko-mir-153 (-37.10)   [sko-miR-153:61-82]

uacuaaccuu  -  g -gg                ca        c  ucaa 
          gc ca u   ccuagucauuuuugug  uaugcaag ug    a
          || || |   ||||||||||||||||  |||||||| ||     
          cg gu a   gggUUAGUGAAAACAC  AUACGUUc ac    u
----cucacg  u  g aca                UG        -  uaac 

>sko-mir-182 (-29.30)   [sko-miR-182:10-32]

-uu       U       U  A      UCA     ugua 
   cguugug UUGGCAA AG UAGAAU   CAcug    c
   ||||||| ||||||| || ||||||   |||||    a
   gcgacau aaccguu uc gucuug   gugac    c
ugu       c       u  -      ---     uagu 

>sko-mir-183 (-33.26)   [sko-miR-183:8-30]

  c              UAU          cacucu 
cg ugugAAUGGCACUG   GAAUUCACUG      g
|| ||||||||||||||   ||||||||||      a
gc acauuuaccgugac   uuuaggugac      u
  a              -cu          cuucgc 

>sko-mir-184 (-38.10)   [sko-miR-184*:25-45] [sko-miR-184:61-82]

uagaa   -gac  uuu  u   cu        -   C G        --  ga 
     gau    gu   cc caa  CCUUAUCA UUC C CGUCCAGc  cc  c
     |||    ||   || |||  |||||||| ||| | ||||||||  ||   
     cua    ca   gg guu  GGAAUAGU AAG G GCAGGUcg  gg  a
----a   auca  uuu  u   CG        C   A -        aa  gu 

>sko-mir-190 (-35.30)   [sko-miR-190:22-45]

---a     aua    ucg     -UG         UUAU        --   u 
    aguuu   ccau   ccaug   AUAUGUUUG    UUGGUUGG  Ugg u
    |||||   ||||   |||||   |||||||||    ||||||||  ||| u
    ucaaa   ggug   gguac   uauacagac    gaccaacu  acc c
cuac     ---    uga     cua         -uau        aa   a 

>sko-mir-193 (-26.40)   [sko-miR-193:43-64]

auu   a          uu au       ag g 
   guu cgggauuuga  g  caguuca  u u
   ||| ||||||||||  |  |||||||  | u
   uaA GCCCUGAAUU  C  GUCAAgu  g u
uug   C          UU CG       cu u 

>sko-mir-210 (-45.30)   [sko-miR-210:61-82]

ugucacuauc     cg   a         c ga    u        -  uu 
          caggc  gga gggaguugc g  gcau gcacaaca au  u
          |||||  ||| ||||||||| |  |||| |||||||| ||   
          guccg  ccu cCUUCAGCG C  CGUG CGUGUUgu ug  u
-cauuucaua     --   g         A AG    -        a  ua 

>sko-mir-242 (-36.60)   [sko-miR-242:21-42]

--c  -acc     c      gu     A  C UU        U  cg     
   ga    ucacu uaaugu  UGCGU GG G  GUGCACAG Ga  uauu 
   ||    ||||| ||||||  ||||| || |  |||||||| ||  ||| a
   cu    aguga guugcg  acgca cc c  uacguguc cu  auac 
cua  guaa     a      au     c  u uu        -  ua     

>sko-mir-252a (-34.50)   [sko-miR-252a:21-43]

c    ---c    ug    a  aC       U     C     A  cg aua 
 auga    uggc  aucc au  UAAGUAC AGUGC GCAGG GU  u   u
 ||||    ||||  |||| ||  ||||||| ||||| ||||| ||  |    
 uacu    accg  uagg ua  auucgug ucaug ugucc ca  g   u
-    uaua    ug    a  ca       u     c     -  au agu 

>sko-mir-252b (-37.42)   [sko-miR-252b:21-43]

-----uaca      cu  u     C          U CC        uuaaa 
         uugguu  ua ccuug UAAGUAGUAG G  GCAGGUAA     a
         ||||||  || ||||| |||||||||| |  ||||||||     u
         aaccaa  au ggaac auucgucauc c  cguccauu     a
gcuacuaaa      -u  -     a          u -u        uacua 

>sko-mir-278 (-42.90)   [sko-miR-278:61-82]

acugucuaa     ga      g              u ua   g    a 
         cgucu  uccgaa gaaugaaagucucg c  auc ugau u
         |||||  |||||| |||||||||||||| |  ||| ||||  
         gcaga  aggUUU CUUGCUUUCAGGGU G  Uag gcua u
cacuauaca     ga      G              - GC   a    a 

>sko-mir-281 (-41.70)   [sko-miR-281:61-82]

ag    a u   -      u  cg         u g   gc     ua  gc 
  gugg g gcu ccuugu gg  aggggagca c cca  gacgg  ug  a
  |||| | ||| |||||| ||  ||||||||| | |||  |||||  ||   
  cauu c cga ggaacg cu  UUCUCUCGU G GGU  CUGUc  au  c
-a    a -   u      -  AA         U A   -A     gc  aa 

>sko-mir-315 (-39.30)   [sko-miR-315:21-41]

-ucacauu      gg   -cg               A       uuau  u 
        gacucu  cgc   UUUUGAUUGUUGCUC GAAAGcc    gc u
        ||||||  |||   ||||||||||||||| |||||||    || c
        uugaga  gcg   aaaauuaacaauggg cuuucgg    ug u
cucuacuu      ga   aua               -       ---c  g 

>sko-mir-365 (-33.70)   [sko-miR-365:52-73]

uau  g      g c       c      a a     c    u 
   gc uuugug a uuggggu ucagag g gcauu ugug a
   || |||||| | ||||||| |||||| | ||||| |||| u
   cg gaacau u AAUCCUA AGUUUC C CGUAA acau u
acu  g      g A       A      - -     U    u 

>sko-let-7 (-48.00)   [sko-let-7:21-42]

guug  g       u     U   G                  agag   ua 
    uu ccuacuc cuggg GAG UAGUAGGUUGUAUAGUUg    cua  c
    || ||||||| ||||| ||| ||||||||||||||||||    |||   
    aa ggguggg gaccc uuc aucguucaacaugucaau    ggu  c
----  g       -     u   a                  agag   ua 

>spu-mir-137 (-27.70)   [spu-miR-137:47-68]

aug     ag            g       -   aa 
   auuac  guauucucgagu aauaaua cag  a
   |||||  |||||||||||| ||||||| |||   
   uGAUG  CAUAAGAGUUCG UUAUugu guc  a
aua     CA            -       a   cg 

>spu-mir-210 (-37.60)   [spu-miR-210:52-73]

cuc             a    g        -----  -  a 
   guuaguugcuguc cgcg cacaagag     ag ca u
   ||||||||||||| |||| ||||||||     || ||  
   uAGUCAGCGACAG GUGC GUGUUcuc     uc gu c
aca             C    -        acaua  u  a 

>spu-mir-242 (-29.20)   [spu-miR-242:20-41]

--uguaac    -     ggca      A GC UU         -  ucuu 
        acca ugucg    UUGCGU G  G  GUGCACAGU gu    u
        |||| |||||    |||||| |  |  ||||||||| ||     
        uggu acggc    aaugca c  c  uacguguua ca    a
cuaaucac    c     acua      c ua uc         a  uuaa 

>spu-mir-375 (-36.70)   [spu-miR-375:62-83]

------------------------      c    u       ---u  -  auaa        g 
                        cgagcu aacg gcaaaac    ug ag    ggucagcu u
                        |||||| |||| |||||||    || ||    ||||||||  
                        GCUCGG UUGC UGUUuug    ac uc    ccggucgg u
ccuaucacacugacguuaAACUGC      C    U       ucgu  a  ---g        c 

>spu-let-7 (-39.60)   [spu-let-7:21-42]

guaca          uuacgU   G         A       -------ug   a 
     ugaauggucc      GAG UAGUAGGUU UAUAGUU         gag u
     ||||||||||      ||| ||||||||| |||||||         ||| a
     acuuaccggg      uuc aucguccga auaucga         cuc c
----c          -uuccu   g         c       uagcgguaa   a 

>spu-mir-1 (-31.70)   [spu-miR-1:60-81]

ccaua     -ugc  ua             ga        ---c   au 
     uccca    ca  acauacuucuuua  auuccaua    uga  c
     |||||    ||  |||||||||||||  ||||||||    |||   
     agggu    gu  UGUAUGAAGAAAU  UAAGGUau    acu  u
-cucc     caaa  UA             -G        cuca   cc 

>spu-mir-7 (-39.30)   [spu-miR-7:17-39]

cau       g    -u   AA   U         G     -  gaaug 
   accucug cccu  UGG  GAC AGUGAUUUU UUGUu gu     u
   ||||||| ||||  |||  ||| ||||||||| ||||| ||      
   uggagac gggg  acc  cug ucacuaaaa aacaa ca     c
acc       a    uc   gg   -         -     u  agaaa 

>spu-mir-200 (-28.20)   [spu-miR-200*:7-28] [spu-miR-200:47-69]

-----u    ---       -  UG     C      -cg      
      ggug   aCAUCAU AC  GACAG AUUGGA   ugauu 
      ||||   ||||||| ||  ||||| ||||||   |||| g
      ucac   UGUAGUA UG  CUGUC UAAUcu   gcuag 
uuucgg    agU       G  GU     A      cuu      

>spu-mir-9 (-33.90)   [spu-miR-9:21-42]

u   ac    -u -u  u   c        U        GUAUGa       c 
 cau  ugac  c  gc uuu UCUUUGGU AUCUAGCU      gugaugu a
 |||  ||||  |  || ||| |||||||| ||||||||      |||||||  
 gua  acug  g  cg gaa agaaacca uggaucga      uacuacg a
u   -c    uu uc  u   u        u        ----aa       u 

>spu-mir-10 (-37.90)   [spu-miR-10:26-48]

uuucuucacu       cu    ucA    U U    C          ---u  -   uuu 
          uuuuggg  uaca   ACCC G AGAU CGAAUUUGUG    cc gag   c
          |||||||  ||||   |||| | |||| ||||||||||    || |||    
          aggaccc  augu   uggg c ucua gcuuagacac    gg cuc   u
--------uc       -u    caa    u -    u          ugau  u   cgc 

>spu-mir-22 (-32.90)   [spu-miR-22:60-81]

cag    gaa         -a    u       a  aaaa    g 
   ucua   acgcuucau  ggca gcugaua gu    uggu a
   ||||   |||||||||  |||| ||||||| ||    ||||  
   agAU   UGUGAAGUG  CCGU CGACuau ca    acug g
caa    --A         GC    -       -  -gua    a 

>spu-mir-29 (-46.10)   [spu-miR-29:61-82]

----caa           u  -      g         gauaguguucuguu 
       ucuuccucuac gc cugguu caacuggug              g
       ||||||||||| || |||||| |||||||||               
       agaaggggaug CG GACUAA GUUGACCAC              u
uacuccc           u  A      A         GAAucuagcugaga 

>spu-mir-31 (-36.50)   [spu-miR-31:19-39]

-uaca     -     g   A    AG   UU          ---    uu 
     aacca gugga aaa GGCA  AUG  GGCAUAGCUg   ugau  a
     ||||| ||||| ||| ||||  |||  ||||||||||   ||||   
     uuggu cacuu uuu ccgu  uac  cugugucgac   auua  a
gcuug     u     a   a    ca   uu          cca    ua 

>spu-mir-33 (-39.89)   [spu-miR-33:21-42]

au  -   -      ag     G        CG           cuuucuc 
  cu cuu ucuugu  ccaug UGCAUUGU  UUGCAUUGCAU       u
  || ||| ||||||  ||||| ||||||||  |||||||||||        
  ga gaa agaacg  gguau acgugaca  aacgugaugua       a
-c  c   u      ga     a        ag           uccccau 

>spu-mir-34 (-45.26)   [spu-miR-34:21-42]

ccu    ----    g       uC   AG      U         uuuucg 
   gauu    ggcu ccuuccu  GGC  UGUAGU AGCUGGUUG      a
   ||||    |||| |||||||  |||  |||||| |||||||||      c
   cuaa    cuga ggaagga  ccg  acgucg ucgaccaac      c
-uu    aguu    -       cc   gg      u         cacuaa 

>spu-mir-71 (-33.90)   [spu-miR-71:22-44]

acag   c       -  u a U        U             ------  a 
    aau gguguuc cc g g GAAAGACA GGGUAGUGAGAUU      ug c
    ||| ||||||| || | | |||||||| |||||||||||||      || u
    uua ucauagg gg c c cuuuuugu cuuaucacucuaa      ac a
-aca   u       u  u c -        -             caaaac  u 

>spu-mir-79 (-33.80)   [spu-miR-79:61-82]

uucauac    -u -u  u   c        u        guauga       c 
       ugac  c  gc uuu ucuuuggu aucuagcu      gugaugu a
       ||||  |  || ||| |||||||| ||||||||      |||||||  
       acug  g  cg gaa AGAAACCA UGGAUCGA      UAcuacg a
---guac    uu uc  u   U        U        ----AA       u 

>spu-mir-92a (-32.10)   [spu-miR-92a:61-83]

-----cac      u    u       uugccu    cc       -ca    u 
        gaaucu gucu guagguc      cgag  caauauu   gugu a
        |||||| |||| |||||||      ||||  |||||||   ||||  
        cuugga uagg CAUCCGG      GUUC  GUUAUaa   cacg c
ccucuaau      -    U       --CCCU    AC       cua    u 

>spu-mir-92b (-43.00)   [spu-miR-92b:61-82]

--------    a      gu  a     ac    c        - ---uu    u 
        ggug uugaug  ca gucgg  cgag gcaauguu g     ccuc a
        |||| ||||||  || |||||  |||| |||||||| |     ||||  
        ccac aacuac  GU CGGCC  GUUC CGUUAUaa c     ggag u
uacuaaaa    -      uC  C     CU    A        g uuuuc    u 

>spu-mir-92c (-47.00)   [spu-miR-92c:61-82]

----gua       -   a  u     u  g    u     u  uccac     a 
       gagggca gca gc ggucg ga gagu gcaau ug     augau a
       ||||||| ||| || ||||| || |||| ||||| ||     |||||  
       cucccgu cgu CG CCGGC CU CUCA CGUUA ac     uacua u
acucuaa       u   c  U     C  G    -     U  -----     a 

>spu-mir-96 (-42.70)   [spu-miR-96:10-30]

         -        U    C       ---------  ua    g 
ucuagucug UUUGGCAC AGCA AUUUUGC         ug  ccuc a
||||||||| |||||||| |||| |||||||         ||  ||||  
agguuagac gaaccgug uugu uagaacg         ac  ggag a
         c        u    a       ugugcuguu  uc    a 

>spu-mir-124 (-33.52)   [spu-miR-124:61-81]

cuucuuauc     -  -u    a            au        uauau 
         caucc cg  ucuu guguucacugug  ccuugauu     u
         ||||| ||  |||| ||||||||||||  ||||||||     c
         guggg gc  ggaA CGUAAGUGGCGC  GGAAUuaa     u
--cuuuaaa     a  uc    C            AC        caaaa 

>spu-mir-125 (-47.14)   [spu-miR-125:22-43]

aaagaga   -     c      C       CC          A  ugcuuu 
       gac ugccc ccaaaU CCUGAGA  CUAACUUGUG ug      u
       ||| ||||| |||||| |||||||  |||||||||| ||       
       cug gcggg gguuua ggacucu  gguuggacac ac      a
---cgua   u     u      a       au          -  uaaacu 

>spu-mir-133 (-39.10)   [spu-miR-133:60-82]

---  cg  aa      c   uua      aaac   a        -  gaa 
   uc  ga  auguag gcu   gcuggu    ggg accaaauc gu   g
   ||  ||  |||||| |||   ||||||    ||| |||||||| ||   u
   ag  cu  uacguc cga   CGACCA    CCC UGGUUUag cg   a
aac  au  --      a   UGC      ACUU   C        g  uaa 

>spu-mir-153 (-47.70)   [spu-miR-153:61-82]

-------    -  ag                u          --    u   uu 
       cccg cc  cccgaucauuuuugug uuaugcaacu  uuug auu  c
       |||| ||  |||||||||||||||| ||||||||||  |||| |||   
       gggu gg  gggUUAGUGAAAACAC GAUACGUUga  agac uag  a
caaucuc    u  ga                U          ug    -   cc 

>spu-mir-182 (-22.20)   [spu-miR-182:10-34]

-   ucuauu         U  U     UCA     -ua  cuc 
 gcc      UUUGGCAAU GA AGAAU   CACUg   ac   a
 |||      ||||||||| || |||||   |||||   ||    
 ugg      gaaccguua cu ucuug   gugac   ug   u
g   ---ucc         -  c     ---     uaa  uau 

>spu-mir-184 (-24.83)   [spu-miR-184:61-82]

--------     u   -cu         -cc    u c     -   auacuau 
        gucuu uau   uucuuauca   cucu g ccggc cga       g
        ||||| |||   |||||||||   |||| | ||||| |||       u
        cagaa aua   GGGAAUAGU   GAGG C GGUcg guu       u
acggugca     u   uuC         CAA    - A     c   aaaguua 

>spu-mir-252a (-39.10)   [spu-miR-252a:20-41]

cacgugacuauguuccgucC             CG      aacugagaaggaaaguga 
                    UAAGUACUAGUGC  UAGGUU                  a
                    |||||||||||||  ||||||                   
                    auucaugaucaug  guccag                  g
-------------------a             au      acucuucgauaccagauc 

>spu-mir-252b (-42.20)   [spu-miR-252b:21-42]

cuuaug    ---          C        A   CC       c g   a 
      ucca   cguugccgau UAAGUAGU GUG  GCAGGUA u auu u
      ||||   |||||||||| |||||||| |||  ||||||| | |||  
      aggu   gcaacgguua auucaucg cac  uguccau a uga a
acuaaa    uga          c        g   -a       - g   a 

>spu-mir-278 (-39.20)   [spu-miR-278:61-82]

--caaa     -      cc g         c      a     uca   u 
      cugcc ucuucu  u gaaugaaag cucgcc aucug   uug u
      ||||| ||||||  | ||||||||| |||||| |||||   |||  
      gaugg agaaga  A CUUGCUUUC GGGUGG Uggau   aau a
aucaua     u      UU G         A      C     -cg   c 

>cte-mir-67 (-39.30)   [cte-miR-67:47-68]

agc                - ug u    c    -c  g 
   gaucuuaccucauuca g  g guug gaug  ug a
   |||||||||||||||| |  | |||| ||||  ||  
   cuggaaUGGAGUAAGU C  C CAAC CUac  gc a
gua                A GU -    A    uc  g 

>lgi-mir-375 (-33.80)   [lgi-miR-375:61-82]

uaga  aaagug   -   -aac    c       uu  u        uuaaa 
    ga      guc gcc    ugac cgagccg  ug aacaaggc     u
    ||      ||| |||    |||| |||||||  || ||||||||      
    cu      cag cgg    AUUG GCUCGGC  GC UUGUUUug     u
--ug  --gaaa   u   aaac    C       UU  -        uaaca 

>sko-mir-193b (-36.10)   [sko-miR-193b:50-71]

aua      g        u       ca      aacgu 
   uguuuu gggguuuc cuggcca  guauga     a
   |||||| |||||||| |||||||  ||||||      
   acaaAA CCCUAAAG GACCGGU  CAUacu     c
aag      A        C       --      ccuaa 

>cte-mir-2d (-39.20)   [cte-miR-2d:60-81]

cacccucauu       u   cu          -       uc   -u  c 
          gagaacc gca  ugaucaaggu ggcugug  uug  gu c
          ||||||| |||  |||||||||| |||||||  |||  || a
          uuuuugg cgu  ACUGGUUUCG CCGACAC  Aac  cg c
---ccacuac       u   uU          U       UA   uu  u 

>cte-mir-216b (-32.11)   [cte-miR-216b:8-29]

gc    c       A       A       auaaccc    gc 
  uugg UAAUAUC GCUGGUA UUCUGAg       cgug  c
  |||| ||||||| ||||||| |||||||       ||||  a
  aacc guuauag cggccgu aggacuc       guac  u
-u    a       c       -       -------    aa 

>cte-mir-242 (-40.90)   [cte-miR-242:20-41]

----------ccaau         ua auU   G       UG  C     -g  guu 
               cguuaacca  g   UGC UAGGUGU  UG ACAGA  gu   a
               |||||||||  |   ||| |||||||  || |||||  ||    
               gcaguuggu  c   acg auccgca  ac ugucu  ua   c
caauuaaacuucuac         gc cau   g       gu  c     ga  aua 

>lgi-mir-242b (-32.00)   [lgi-miR-242b:9-30]

---------           CG    CAUU         u  u 
         uugaaauaUUG  UAGG    GUGCACAGU gg c
         |||||||||||  ||||    ||||||||| || a
         ggcuuugugac  aucc    uacgugucg uc a
aguuuaucg           au    aucu         c  u 

>lgi-mir-252b (-32.70)   [lgi-miR-252b:20-41]

------guuguc     ugg    uA            CC       - g  a 
            uguca   uaac  UAAGUAGUGGUG  GCAGGUA u au u
            |||||   ||||  ||||||||||||  ||||||| | ||  
            auagu   auug  auuuaucacuac  cguccau g ua u
agaaccacugua     cua    uc            uu       c g  g 

>sko-mir-375 (-33.80)   [sko-miR-375:54-75]

ccg         ga    c      cc    u  uggcuuau    u 
   guguuguug  uugu cgggcc  acga ca        agcg a
   |||||||||  |||| ||||||  |||| ||        ||||  
   cacaauaau  AGCG GCUCGG  UGCU GU        Ucgc a
uag         uc    C      CU    U  -------U    a 

>spu-mir-183 (-28.40)   [spu-miR-183:12-33]

auuu  -    - U        A       CA    g  uu   u 
    cc ucgu c AUGGCACU UAGAAUU  CUGu ug  gug u
    || |||| | |||||||| |||||||  |||| ||  |||  
    gg agua g uaccguga aucuugg  gaca au  uac g
----  u    c u        c       uc    -  gc   c 

>spu-mir-219 (-38.50)   [spu-miR-219:21-43]

---uccau   a     cu        U     A     A      -   aa 
        gcg guguu  ccguUGAU GUCCG ACGCA UUCUUG uug  u
        ||| |||||  |||||||| ||||| ||||| |||||| |||  u
        cgc cauag  ggugacua caggc ugugu aagaac gau  u
uccacgau   -     uu        -     a     c      u   cc 

>aqu-mir-2014 (-89.90)   [aqu-miR-2014*:11-32] [aqu-miR-2014:120-141]

-u     a             C  GGG      u  aaggaa        aaa               uga   c     
  guggu uugUAGGUCGGGC UG   GGCAGG gg      uggcggcc   agcggcaagggagag   ugg ugca 
  ||||| ||||||||||||| ||   |||||| ||      ||||||||   |||||||||||||||   ||| ||| c
  cacca aACAUCUAGCCUG AC   CCGUcc cc      accgucgg   ucgucguuuucucuu   auc acgu 
gg     g             A  AAA      u  -----a        gcg               --g   -     

>aqu-mir-2015 (-53.70)   [aqu-miR-2015*:16-36] [aqu-miR-2015:73-93]

-----      gau  a           U         A   a   uaa    -   c 
     ucucau   gu uugUCAUGUAU GUGGAGGGG GAg cuu   ggag uag u
     ||||||   || ||||||||||| ||||||||| ||| |||   |||| ||| u
     agagug   ca aACAGUACGUA UACCUCUCC cuc gag   ccuc guc u
guagu      -au  a           C         A   -   -ua    u   a 

>aqu-mir-2016 (-46.00)   [aqu-miR-2016:3-24] [aqu-miR-2016*:93-114]

--           C    U        gauuaa     ----        uu    c    u 
  ugUAGAUUGGG UUGG CGGCAGAu      aagag    auuaaguu  uguc uuuu c
  ||||||||||| |||| ||||||||      |||||    ||||||||  |||| ||||  
  ACAUCUAAUUC GACC GUCGUcua      uucuc    uaguucga  acag agaa a
gg           U    U        ----aa     aacg        uc    a    a 

>aqu-mir-2017 (-52.82)   [aqu-miR-2017*:15-35] [aqu-miR-2017:77-98]

-------     g   gg   A         -              ucuagcaa     a  a 
       uggau agg  uug GUACACGGG GUAUGGGUAGUgcu        ggauu ua u
       ||||| |||  ||| ||||||||| ||||||||||||||        ||||| ||  
       accua ucc  aAC CGUGUGUCC CGUGUCCAUcacga        ccuga au c
aagcuau     -   -a   C         A              ---uuuua     a  a 

>aqu-mir-2018 (-66.80)   [aqu-miR-2018:6-27] [aqu-miR-2018*:115-136]

--ca        GA C G            aaa auaa     cg    ---    u        caua         
    gugUGUCG  G C GAGGUUCCGGAg   g    aagcc  ugca   ggca uggaauga    aaccgguu 
    ||||||||  | | ||||||||||||   |    |||||  ||||   |||| ||||||||    ||||||| g
    cACACAGC  C G UUCCAGGGCcuc   c    uucgg  acgu   uugu accuugcu    uugguuau 
guga        UC A G            --- --ga     ca    ggu    u        ----         

>aqu-mir-2019 (-44.50)   [aqu-miR-2019:7-28] [aqu-miR-2019*:92-113]

cga   A      U           C      cu  cu    a ac c   c  u      
   uuc AAGUGA CGGGUUGCCGU UGagcu  ag  agcc u  c agg cu guuaa 
   ||| |||||| ||||||||||| ||||||  ||  |||| |  | ||| || |||| c
   aAG UUCACU GUUCGAUGGCA acucgg  uc  ucgg a  g ucc ga caauu 
---   A      C           C      --  --    a ga a   u  c      

>aqu-mir-2020 (-52.20)   [aqu-miR-2020:4-24] [aqu-miR-2020*:88-108]

--      G                   acagucacaaaccagacugaccgguuu 
  ugcUGG UAGUGUGUCUUUUCGGAau                           c
  |||||| |||||||||||||||||||                           u
  aCGACC AUCAUACGGGAAGGCcuua                           c
uc      A                   cucuuuggacagucgaggccaguauua 

>cte-mir-1992 (-39.22)   [cte-miR-1992:48-70]

-cu     u         -  gg          uacca 
   guguc cgucggugg au  uugcugguag     u
   ||||| ||||||||| ||  ||||||||||     u
   cacaG GUAGUCACC UG  GACGACUauc     g
ccg     U         A  UU          cgacc 

>cte-mir-1993 (-22.80)   [cte-miR-1993:44-65]

-gug       g    u       c  u  -      
    cauuucg gaau ucggcau au cu guugg 
    ||||||| |||| ||||||| || || |||| c
    guAGAGC CUUA AGUCGUA UA ga caauu 
uuua       A    U       U  U  u      

>cte-mir-1994 (-40.00)   [cte-miR-1994:59-80]

gguu  g  uc   u   a         g  c    uauc       
    gu ca  ggg gga gcgcugucu ca cgga    cggauu 
    || ||  ||| ||| ||||||||| || ||||    ||||| g
    ca gU  CCC CCU UGUGACAGA GU gccu    gccuau 
---g  g  CU   U   G         -  u    ----       

>cte-mir-1987 (-21.90)   [cte-miR-1987:42-63]

---aau      u    u    a   uc    ucu 
      cacgac uuac ucug gca  uugu   u
      |||||| |||| |||| |||  ||||    
      GUGUUG AAUG AGAC CGU  aacg   g
aagcaC      U    U    -   CA    ucg 

>cte-mir-1989 (-25.50)   [cte-miR-1989:6-25]

cc  u     U  C             aagu 
  ag UCAGC GU AUGAUGCCUUCuu    u
  || ||||| || |||||||||||||    u
  uc aguug ca uacugcgggagaa    u
gc  c     u  a             caag 

>cte-mir-2001 (-21.30)   [cte-miR-2001:14-36]

cccguuccuca g   U  C        U      Gaag  a 
           c UUG GA CGUUAUAA GGGCAU    uc u
           | ||| || |||||||| ||||||    || u
           g aac cu gcaauauu cucgua    ag c
---------gc g   u  a        c      -acg  u 

>cte-mir-1995 (-31.10)   [cte-miR-1995:17-38]

cag    -       cuGU    C  G     U      c   u 
   ggcg aaguuuu    ACAU UC CAUUG GACCAU ugu g
   |||| |||||||    |||| || ||||| |||||| ||| u
   cugc uucgaaa    ugua ag guaac uuggua gca u
gag    c       uagu    u  g     u      c   a 

>cte-mir-1996a (-31.30)   [cte-miR-1996a:8-29]

uc  u  C    G     U       G    guu 
  gc gu UCAA UGAGG CAGUGCU CUgu   u
  || || |||| ||||| ||||||| ||||    
  ug ca aguu acuuc gucacgg gaca   u
gu  c  a    a     u       g    auc 

>cte-mir-1997 (-47.40)   [cte-miR-1997:53-75]

cau  -          u         -      c   cguc    ga 
   gc gcggcuccgu ggguuggug ggaccu cag    aguu  c
   || |||||||||| ||||||||| |||||| |||    ||||   
   cg cgcugggguA CCCGACUAC CUUGGA GUC    Ucaa  c
uuc  u          C         A      C   ----    ga 

>cte-mir-1998 (-38.40)   [cte-miR-1998:61-82]

--c                c    cca     uuu     cc   a 
   uggugguguauauuuc gcgu   gacuc   guggu  ugc a
   |||||||||||||||| ||||   |||||   |||||  |||  
   accACUACAUGUAGAG CGCA   UUgag   uauua  acg u
cca                A    -AG     --c     -a   g 

>cte-mir-1999 (-47.20)   [cte-miR-1999:56-77]

uau     c              u         a    ---    c 
   gccau ggaggcgggcuuaa cuuuggcua auag   ugaa a
   ||||| |||||||||||||| ||||||||| ||||   |||| c
   cggua ucucugCCUGGGUU GAAACCGAU UAUc   acuu a
cau     -              U         G    cga    a 

>cte-mir-2000 (-30.00)   [cte-miR-2000:51-72]

cuu         uac        ugg  u         uua 
   cgcauuucu   cuggaagu   ga ggcuuuuau   c
   |||||||||   ||||||||   || |||||||||   a
   guguagagg   GACUUUCA   CU CUGAAAaug   u
ucu         cUU        UCA  U         uuc 

>cte-mir-1996b (-42.00)   [cte-miR-1996b:20-41]

guuucu   -    u     A   AG    GU   --         aaug  acu 
      agc gucu ccagc UCA  UGAG  CAG  AUCUUGGgu    gu   a
      ||| |||| ||||| |||  ||||  |||  |||||||||    ||    
      ucg caga ggucg agu  acuc  guc  uaggaccca    cg   u
------   u    c     c   ca    uu   au         ---g  guu 

>cla-mir-1992 (-25.80)   [cla-miR-1992:41-64]

ccuc      c  - ug          guuuu 
    caucag gg a  auugcuggua     a
    |||||| || |  ||||||||||      
    GUAGUC CC U  UGACGACUau     u
-UGU      A  A GU          aaaca 

>cla-mir-1994 (-24.30)   [cla-miR-1994:40-61]

cuuc  uu         u    a    ugau 
    gg  ggacaugcu gucu caug    u
    ||  ||||||||| |||| ||||     
    CC  CCUGUGUGA CAGA GUac    u
-GCU  CU         -    -    uaau 

>hru-mir-1984 (-24.80)   [hru-miR-1984:1-23]

----U   C      U   GA      u u 
     GCC UAUCCG CAG  ACUGUG g g
     ||| |||||| |||  |||||| | a
     cgg auaggu guc  ugacac c u
cuacc   c      -   ug      c u 

>hru-mir-1985 (-22.40)   [hru-miR-1985:1-23]

-----U      U     A U       uucg 
      GCCAUU UUAUC G CACUGUG    a
      |||||| ||||| | |||||||     
      cgguaa aguag c gugacgc    a
auaguc      c     - u       ucaa 

>hru-mir-1986 (-31.90)   [hru-miR-1986:46-67]

ugguuguggg        g      cg    a   u 
          cgcggguc uggggg  ccac guc a
          |||||||| ||||||  |||| ||| u
          GUGCCUAG ACCCUU  GGUg cag u
--------UA        A      UA    a   u 

>hru-mir-1990 (-37.20)   [hru-miR-1990:9-30]

-  acg       A       GG     A  -   u 
 gc   ugcAGUA GUUGAUG  GUCCC GG uug c
 ||   ||||||| |||||||  ||||| || |||  
 cg   acgucau caacugc  caggg cc aau u
g  gga       -       au     c  u   a 

>hru-mir-1991 (-21.10)   [hru-miR-1991:4-26]

--cuuCU        U  UCG       -----  u 
       UACCCUGU AA   GAGAAGU     gc a
       |||||||| ||   |||||||     || u
       augggaca uu   cucuucg     cg g
cguuuau        c  -ug       ucccu  a 

>hma-mir-2022 (-31.90)   [hma-miR-2022:44-66]

cga    u  a      ga               u 
   aauc gg gacgaa  cagcuggcaaauauu u
   |||| || ||||||  ||||||||||||||| u
   uuag CC CUGUUU  GUUGAUCGUUUauga a
uua    U  C      UC               c 

>isc-mir-2001 (-36.30)   [isc-miR-2001:12-34]

uccugg      U    C   U   A       G   guc 
      ccgccU GUGA CGU ACA UGGGCAU uug   c
      |||||| |||| ||| ||| ||||||| |||   a
      ggcggg cacu gca ugu acccgua gac   c
----ca      u    u   c   c       -   gug 

>lgi-mir-1992 (-31.10)   [lgi-miR-1992:45-67]

 ug               - ug     ag    uucc 
u  uugauaagucagugg a  auugc  gaua    a
|  ||||||||||||||| |  |||||  ||||     
a  aauuGUUUAGUCACC U  UGACG  CUau    u
 gu               A GU     -A    ugac 

>lgi-mir-1993 (-24.50)   [lgi-miR-1993:46-67]

-  au      g      a          cc   aau 
 gu  auuucg gaauau ggcauaaugc  guu   a
 ||  |||||| |||||| ||||||||||  |||    
 cg  uAGAGC CUUAUA UCGUAUUAUg  caa   c
u  cc      A      G          --   guu 

>lgi-mir-1994a (-32.80)   [lgi-miR-1994a:45-66]

- u         a u   u  c     c    cccg 
 c cucagggga g cac cu gucuc augc    a
 | ||||||||| | ||| || ||||| ||||     
 g gaGUUCCCU C GUG GA CAGAG Uacg    u
a u         C U   U  -     -    acua 

>lgi-mir-1994b (-21.30)   [lgi-miR-1994b:41-62]

---u   c   a  a    u      a    uuac 
    ucu agg ag acau cugucu caug    a
    ||| ||| || |||| |||||| ||||     
    ggA UCC UC UGUG GACAGA GUac    c
acuc   C   C  C    U      -    caau 

>lgi-mir-1984 (-24.80)   [lgi-miR-1984:7-29]

augccuUG     U   UC   A      -a   a 
        CCCUA CCG  AGG ACUGUG  uau g
        ||||| |||  ||| ||||||  ||| u
        gggau ggc  ucc ugacac  aua u
--ugacaa     -   ua   g      ag   a 

>lgi-mir-1985 (-22.70)   [lgi-miR-1985:6-29]

ugc  U        UAU   U      -  uuc 
   ca GCCAUUUU   CAG CACUGU GA   a
   || ||||||||   ||| |||||| ||    
   gu ugguaaga   guc gugaca cu   u
gua  u        -uu   c      u  uau 

>lgi-mir-1986 (-32.60)   [lgi-miR-1986:46-67]

-cu    ug g        g      ca     cuua 
   auug  g cgcggauc uggggg  ccacu    c
   ||||  | |||||||| ||||||  |||||    u
   ugac  U GUGCCUAG ACCCUU  GGUgg    u
acu    gu A        A      UA     cacu 

>lgi-mir-1988 (-47.90)   [lgi-miR-1988:17-38]

cca             AG              A       ac 
   agcugucuuguuc  UGGUUUUCCGUUGC CAUGCgu  a
   |||||||||||||  |||||||||||||| |||||||  u
   uugauagaauagg  acuagagggcaacg guacgua  a
uua             ca              c       cg 

>lgi-mir-1989 (-29.20)   [lgi-miR-1989:6-25]

gac        G           U    uu  g 
   uaUCAGCU UCAUGAUGCCU Ccug  uu g
   |||||||| ||||||||||| ||||  || a
   augguugg aguauuacgga gggu  ga a
uua        a           u    uu  g 

>lgi-mir-2001 (-30.60)   [lgi-miR-2001:12-34]

uac  u       G   C   U    U        ag 
   cg gaccuUU UGA CGU AUAA GGGCAUUu  a
   || ||||||| ||| ||| |||| ||||||||  a
   gc cugggaa acu gca uauu cucgugaa  u
cuu  u       g   a   u    c        gu 

>lgi-mir-1990 (-34.00)   [lgi-miR-1990:9-30]

auu     -    A       GG     A  uua 
   cgugc AGUA GUUGAUG  GUCCC GG   u
   ||||| |||| |||||||  ||||| ||   u
   gcacg ucau caacugc  caggg cc   u
cgc     a    -       au     c  ugu 

>lgi-mir-1991 (-22.46)   [lgi-miR-1991:9-31]

uuu     GU        U  U   A     cuuaua 
   guaaa  UACCCUGU AA CGA GAAGU      u
   |||||  |||||||| || ||| |||||      u
   cauuu  augggaca uu gcu cuuca      u
cgc     au        c  u   -     cucuau 

>nve-mir-2022 (-28.00)   [nve-miR-2022:46-68]

agaucgccu     u         -u      u      g 
         gaaag cgggauaaa  caacug caagug u
         ||||| |||||||||  |||||| |||||| u
         uuuuc GCCCUGUUU  GUUGAU GUUUac g
-------uc     C         UC      C      u 

>sko-mir-2001 (-31.00)   [sko-miR-2001:7-28]

a           C       A       --aucaa   c 
 cguugUUGUGA CGUUAUA UGGGCAU       gca c
 ||||||||||| ||||||| |||||||       |||  
 guaacaacauu gcgaugu auccgua       cgu a
-           u       c       auacuaa   a 

>sko-mir-2012 (-36.40)   [sko-miR-2012:12-33]

aua        U        C            -  ga 
   uuacuugg AGUACUGG AUAUGGACAUUG gu  u
   |||||||| |||||||| |||||||||||| ||   
   agugaacc uuaugacu uauacuuguaac ca  u
uag        u        u            u  au 

>sko-mir-2013 (-46.80)   [sko-miR-2013:60-81]

uggaa   c      uu               u  u     g    aucu 
     uau ugcucu  acugcacaucgcuau uc ugcug cacc    g
     ||| ||||||  ||||||||||||||| || ||||| ||||    a
     aua augagg  ugacGUGUGGUGAUG AG ACGAC GUgg    u
-acaa   a      --               U  U     -    aaau 

>sko-mir-2008 (-37.06)   [sko-miR-2008:56-77]

uucu     uu    u       a   c           uucgca 
    ucauc  uuac ccguauu aca ugagguugaug      g
    |||||  |||| ||||||| ||| |||||||||||      u
    gguag  aaug GGCAUAA UGU GCUCCGACUAc      a
-gau     uc    c       C   C           caauca 

>sko-mir-2011 (-34.40)   [sko-miR-2011:57-78]

augug      u     cg       u        aa     caaaa 
     uuuauu caaug  gucacug cacaccuu  ggugu     u
     |||||| |||||  ||||||| ||||||||  |||||      
     agauaa guuaC  UAGUGAU GUGUGGAA  CCAca     u
-auca      c     AG       U        --     uuaaa 

>spu-mir-2001 (-24.30)   [spu-miR-2001:7-28]

u g   A   G    A    A       -  a  a 
 u uca UGU ACCG UAUA UGGGCAU ga ua u
 | ||| ||| |||| |||| ||||||| || ||  
 a agu aca uggc auau accugua cu gu c
u g   a   g    g    g       a  a  a 

>spu-mir-2012 (-36.60)   [spu-miR-2012:12-33]

u    u    a      U    U          -uu    u 
 gggu cuug UAGUAC GGCA AUGGACAUUG   guaa a
 |||| |||| |||||| |||| ||||||||||   |||| a
 uccg gaac gucaug cugu uacuuguaac   cauu u
g    u    c      c    c          ucu    c 

>spu-mir-2013 (-45.80)   [spu-miR-2013:61-81]

---ugau    -    uu               ua        ---g   cgu 
       gucu acug  cuacgccgcuacauc  guugcauu    uga   c
       |||| ||||  |||||||||||||||  ||||||||    |||    
       caga ugac  gaUGUGGUGAUGUAG  CGACGUaa    acu   u
accuuac    a    uc               UA        aggg   uug 

>spu-mir-2002 (-34.00)   [spu-miR-2002:59-81]

uau     -  a         -   a       u    u  u  g  a 
   ucauc ag cugauaaga cca caggugu auuc ca gu ug u
   ||||| || ||||||||| ||| ||||||| |||| || || || g
   aguag uc gauUAUUUU GGU GUCUACA UAAG gu ua ac u
gau     c  g         U   C       -    U  c  g  a 

>spu-mir-2003 (-37.80)   [spu-miR-2003:14-36]

---g   gu       -A     U    U U         ---c  ga 
    cug  uggccua  ACCCG AAGG C UAACUUGUG    ug  g
    |||  |||||||  ||||| |||| | |||||||||    ||   
    gac  gccggau  ugggu uucc g auuggacac    ac  u
auaa   ag       ga     -    c u         auga  au 

>spu-mir-2004 (-49.40)   [spu-miR-2004:61-82]

aga       -      c          c   c    u      ga     
   ggcuacu ugcgga cuuucugugg ugu gugu aagugu  uucu 
   ||||||| |||||| |||||||||| ||| |||| ||||||  ||| a
   ccgaugg acguuU GAAGGACACC ACA CACA Uucaca  aagu 
gua       c      U          A   -    C      -g     

>spu-mir-2005 (-47.00)   [spu-miR-2005:22-45]

cuacu        -       cA U        GA  G         u auau 
     ugucaauc uuuggug  G CCAAUAGG  GG CAUUGCAGg g    u
     |||||||| |||||||  | ||||||||  || ||||||||| |    u
     acaguuag agaccau  c gguuaucc  uc gugacgucc c    g
---cu        u       ua u        --  g         - gaaa 

>spu-mir-2006 (-36.10)   [spu-miR-2006:62-83]

gcc     a gu c      c         a  u   --------ug   a 
   guagc u  g caucgc accaagugu cu cag          gac u
   ||||| |  | |||||| ||||||||| || |||          |||  
   caucg g  C GUGGCG UGGUUCACA GA Guc          cug a
-cu     a ug C      A         C  -   uaaauuuuug   u 

>spu-mir-2007 (-35.20)   [spu-miR-2007:15-37]

ucg     a       -       C    U  U     --ag   uuu 
   gcauc ugcauUA UUUCAGG AGUA AC GGUAA    ggu   a
   ||||| ||||||| ||||||| |||| || |||||    |||   u
   uguag acguaau aaagucc ucgu ug ccauu    cca   u
gug     a       u       a    -  u     cuua   cgu 

>spu-mir-2008 (-40.60)   [spu-miR-2008:56-76]

uucuc           c      a   a  u        a gaa  u 
     cacuuuuuacc cguauu aca ug ggcugaug g   uc u
     ||||||||||| |||||| ||| || |||||||| |   ||  
     gugaggaaugg GCAUAA UGU GC CCGACUAc c   ag a
-aaca           a      C   C  U        - --a  u 

>spu-mir-2009 (-32.00)   [spu-miR-2009:61-83]

uucaaa  cu   ua    u  g         a       c  u aa  a 
      uc  cag  aucu ug uuuuugugg acagcuc ug g  uu u
      ||  |||  |||| || ||||||||| ||||||| || |  ||  
      ag  guc  uagA AC AGAAACACC UGUUGAG ac c  aa a
cuacua  -u   gc    C  A         C       U  - ag  u 

>spu-mir-2010 (-27.80)   [spu-miR-2010:53-74]

-uca       -u     uu  uc        --   aucuu 
    cagcaag  gcugg  uc  caguaauu  ugu     c
    |||||||  |||||  ||  ||||||||  |||      
    gucgUUC  CGACU  AG  GUCAUUaa  acg     a
uaug       CC     GU  UU        cu   auacu 

>spu-mir-2011 (-52.10)   [spu-miR-2011:60-81]

gcacc  g    g        ca       c        c    --   uu 
     gu ccua ucucccug  gucacua cacaccuu ggug  gcu  u
     || |||| ||||||||  ||||||| |||||||| ||||  |||   
     ca gggu agggggaC  UAGUGAU GUGUGGAA CCAc  cga  u
acuaa  a    -        AG       C        -    uu   ua 

>aqu-mir-2021 (-73.90)   [aqu-miR-2021*:16-36] [aqu-miR-2021:121-141]

-a         a                  AC     -  guuaaa      ---a     ---     c    -  -   u g 
  guguuguug ugucCAUGGAAUAUCGGC  CCAUC ca      accuuc    acgau   ccacu gugc ag cua g g
  ||||||||| ||||||||||||||||||  ||||| ||      ||||||    |||||   ||||| |||| || ||| |  
  cguaacaac acAGGUGCUUUGUGGCUG  GGUag gu      uggagg    uguua   gguga cacg uc gau c u
aa         c                  GU     u  -----g      acug     gug     c    a  a   c c 

>nve-mir-2023 (-44.30)   [nve-miR-2023*:23-43] [nve-miR-2023:53-73]

ga   gcg          g g        C         A   - g 
  guu   ugacauaccu u uCUGCCAC UGUAUUUCU UCA c u
  |||   |||||||||| | |||||||| ||||||||| ||| |  
  cag   gcuguguggg a GGAUGGUG ACAUGAAGA Agu g c
aa   uua          a G        A         A   a a 

>nve-mir-2024a-1 (-29.00)   [nve-miR-2024a*:7-28] [nve-miR-2024a:38-59]

u      A             G      gg 
 gcuucA AAUAUCGGUGUUG GUAAAA  u
 |||||| ||||||||||||| ||||||  c
 cgaAGU UUAUAGCCAUGAC CAUUuu  a
a      G             A      ac 

>nve-mir-2025 (-37.10)   [nve-miR-2025*:21-42] [nve-miR-2025:51-72]

----aacaauua     -cau   a        AU            cu 
            ggcca    aca AGCUUUCG  GGCUAGAAAAUC  u
            |||||    ||| ||||||||  ||||||||||||   
            ccggu    ugU UUGAAGGC  CCGAUUUUUUag  a
uuaccauuauaa     ccgu   G        GC            ug 

>nve-mir-2024b (-29.20)   [nve-miR-2024b*:15-36] [nve-miR-2024b:46-67]

----ag   -u  -       A             GGU    gg 
      ugc  ac ugcuucA AAUAUCGGUGUUG   AAAA  u
      |||  || ||||||| |||||||||||||   ||||  c
      acg  ug acgaAGU UUAUAGCCAUGAC   UUuu  a
aauuaa   uu  c       G             AAC    ac 

>nve-mir-2024c (-28.90)   [nve-miR-2024c*:4-25] [nve-miR-2024c:35-56]

-               C  G      gg 
 uucAGAAUAUUGGUG UG GCAAAA  u
 ||||||||||||||| || ||||||  c
 gAGUCUUAUAACCAC AC CGUUuu  a
g               A  A      ac 

>nve-mir-2024d (-40.20)   [nve-miR-2024d:20-41]

ca    g    cu                UGC  G      gg 
  ucag uaga  ugcuucAGAAUAUUGG   UG GCAAAA  u
  |||| ||||  ||||||||||||||||   || ||||||  c
  aguc gucu  acggagucuuauaacc   ac cguuuu  a
-a    -    uc                uua  a      ac 

>nve-mir-2024e-1 (-39.60)   [nve-miR-2024e*:21-42] [nve-miR-2024e:52-73]

----a a    g    cu                CGC  G      gg 
     c ucag uaga  ugcuucAGAGUAUUGG   UG GCAAAA  u
     | |||| ||||  ||||||||||||||||   || ||||||  c
     g aguc gucu  acggAGUCUUAUAACC   AC CGUUuu  a
ucaag a    -    uc                AUU  A      ac 

>nve-mir-2024f (-41.40)   [nve-miR-2024f*:23-44] [nve-miR-2024f:54-75]

------------aa  ag ---a      cu                 AC  G      g   
              ag  c    gguaga  ugcuucAGAAUAUUGGU  UG GCAAAA gu 
              ||  |    ||||||  |||||||||||||||||  || |||||| | c
              uc  g    ucgucu  acggAGUCUUGUAACCA  AC CGUUuu ca 
agaacauuaaagga  aa gaag      uc                 CU  A      g   

>nve-mir-2026 (-37.70)   [nve-miR-2026:16-36] [nve-miR-2026*:46-66]

ac       c c cg        GU            g 
  uuguguc c c  UUUCAAAU  CUACUGAUGGAa u
  ||||||| | |  ||||||||  |||||||||||| u
  gacgcag g g  GAAGUUUA  GGUGACUACcuu g
aa       a a UU        UG            g 

>nve-mir-2027 (-34.40)   [nve-miR-2027*:22-43] [nve-miR-2027:51-72]

-----aauccga     u    gc    UUG       UU      C    
            gagcc uaag  uuGC   UUGGUAA  UUGCAU Ugu 
            ||||| ||||  ||||   |||||||  |||||| || u
            cuugg auuc  AACG   AACCAUU  AGCGUA acg 
aaggacuaguga     u    uu    UAA       UU      c    

>nve-mir-2024g-1 (-35.80)   [nve-miR-2024g*:22-42] [nve-miR-2024g:54-75]

accaauaag   -u  -       A             -GG         
         ugc  ac ugcuucA AAUAUCGGUGUUG   UAAAaggu 
         |||  || ||||||| |||||||||||||   ||||||| c
         acg  ug acgaAGU UUAUAGCCAUGAC   AUuuucca 
-------aa   uu  c       G             ACA         

>nve-mir-2028 (-48.90)   [nve-miR-2028:16-36] [nve-miR-2028*:44-64]

-----ag      -gg                  U       u 
       gacgau   agucuUAAUGUUCCUGCU GUUCCUA a
       ||||||   |||||||||||||||||| ||||||| u
       cugcug   uuaGAAUUACGAGGACGA CAAGGau a
caaauaa      aca                  U       u 

>nve-mir-2029 (-42.00)   [nve-miR-2029:22-43] [nve-miR-2029*:51-72]

-----ca    gu    -u     u  UA        C   G       g 
       uagu  ggca  uuagg ga  CGCAAUCC UAG UUACCAU u
       ||||  ||||  ||||| ||  |||||||| ||| ||||||| c
       guca  ccgu  aaucc CU  GCGUUAGG AUC AAUGGua a
ucguaac    au    uc     u  UC        U   A       g 

>nve-mir-2030 (-40.10)   [nve-miR-2030:21-42] [nve-miR-2030*:50-72]

acaccca       g               U     -   AUUg 
       caguaug ccguaUAGCAUAACA UGUAA GAG    u
       ||||||| ||||||||||||||| ||||| |||    a
       gucguau ggcAUGUCGUGUUGU ACAUU CUC    a
-ugauaa       a               U     U   Caag 

>nve-mir-2031 (-60.10)   [nve-miR-2031:14-36] [nve-miR-2031*:43-65]

-a                                   u 
  gaccaccuaaaaUACGGCACUCUAUUUAUGGUACU u
  |||||||||||||||||||||||||||||||||||  
  uugguggauuUUAUGCCGUGAGAUAAAUACCAUga u
aa                                   a 

>nve-mir-2032a (-42.70)   [nve-miR-2032a:21-40] [nve-miR-2032a*:52-71]

--ucgc  g     c    cu UC             G  A   u 
      ga cucac guug  g  GCUGCGACAGUUA CU Gca u
      || ||||| ||||  |  ||||||||||||| || ||| u
      cu gagug cagu  C  CGACGUUGUCAAU GA cgu a
uuauga  g     u    aC UA             G  g   u 

>nve-mir-2032b-1 (-39.10)   [nve-miR-2032b:19-38] [nve-miR-2032b*:50-69]

gcgag     c    cu UC             G  A   u 
     cucac guug  g  GCUGCAACAGUUA CU Gca u
     ||||| ||||  |  ||||||||||||| || ||| u
     gagug cagu  C  CGACGUUGUCAAU GA cgu a
----g     u    aC UA             G  g   u 

>nve-mir-2033 (-26.90)   [nve-miR-2033:22-39] [nve-miR-2033*:80-98]

----------c     aucuuucu  -   -      --AA       A    -   ac    c  g    g 
           gacau        ga cuc ugAGCU    UGAUGAG GAAU caa  auug cu auau c
           |||||        || ||| ||||||    ||||||| |||| |||  |||| || |||| u
           cugug        cu gag ACUUGA    AUUGCUC CUua guu  uaac ga ugua a
uuccgucuuuc     --------  c   u      AGUC       -    a   -c    a  -    a 

>nve-mir-2034 (-31.50)   [nve-miR-2034*:21-42] [nve-miR-2034:55-75]

--    aaaga     g  u             A A        ccua 
  guga     gugua uu uaCUGAUGUUUUU G AUUAGCCC    a
  ||||     ||||| || ||||||||||||| | ||||||||     
  cauu     uacgu aa gUGACUGUAAAAA C UAAUCGgg    a
aa    caaag     a  c             A G        aagu 

>nve-mir-2035-1 (-35.50)   [nve-miR-2035:11-30] [nve-miR-2035*:54-73]

guggcguauuA     U             ugaagu     a 
           CAUGG CUGUUACAAGGGA      gcucg g
           ||||| |||||||||||||      ||||| u
           GUACC GACAGUGUUCCcu      ugagc u
---uuaagAGG     C             ------     u 

>nve-mir-2036 (-43.70)   [nve-miR-2036*:21-42] [nve-miR-2036:53-75]

--auaaga       c    cc        -A         A   cuu 
        gucgugc agga  CGGUGAGA  CGUACAGUA GCA   g
        ||||||| ||||  ||||||||  ||||||||| |||    
        cggcacg uccu  GCUACUCU  GCAUGUUAU Ugu   a
acaaguaa       -    AU        CA         A   agc 

>nve-mir-2037 (-35.50)   [nve-miR-2037*:23-41] [nve-miR-2037:52-73]

----a   a     ug uc             C G     --    --  u 
     gcu ggucu  g  accguggUAAAAG C UCCAA  GCAC  Cc c
     ||| |||||  |  ||||||||||||| | |||||  ||||  ||  
     uga cuaga  c  uggUGCCAUUUUC G AGGUU  UGUg  gg u
cauac   -     gu --             A -     AG    ac  u 

>nve-mir-2038 (-20.10)   [nve-miR-2038*:22-42] [nve-miR-2038:51-71]

--aaccuga   gc  u  u    C C  A    C    U    cc 
         uga  cu ag gucA C UG UGAC UUAG GUCA  c
         |||  || || |||| | || |||| |||| ||||   
         acu  ga uc cAGU G AC ACUG AAUU CAgu  u
aguaguccc   gu  u  -    A U  C    U    C    ag 

>nve-mir-2039 (-25.70)   [nve-miR-2039*:8-27] [nve-miR-2039:37-56]

uuguaua                    ua 
       AGCCUACCUUUAUUUUAUUU  u
       ||||||||||||||||||||  a
       UCGGAUGGAAAUAAAAUAaa  u
-aaucUC                    ug 

>nve-mir-2040a-1 (-41.40)   [nve-miR-2040a*:21-43] [nve-miR-2040a:51-73]

gaucgu      --u  a         U   C     C UG    c 
      gaugcc   ac accuUCGGG CAG UACGA A  AGCG u
      ||||||   || ||||||||| ||| ||||| |  |||| c
      cugcgg   ug ugGAAGUCC GUC AUGCU U  UUgc c
-cauuu      ucc  a         C   A     C GU    u 

>nve-mir-2041 (-71.90)   [nve-miR-2041*:21-41] [nve-miR-2041:48-69]

--                              U          c 
  auccucggaaacccagggguAUUUUGCUCU ACGUUUCACU g
  |||||||||||||||||||||||||||||| ||||||||||  
  uaggagccuuuggguccUCAUAAAACGAGA UGCAAAGUga c
ag                              U          g 

>nve-mir-2042 (-31.90)   [nve-miR-2042:21-42] [nve-miR-2042*:49-70]

uuuacaauga         c            CU  C  U  u 
          cgacacacc UUAUAAAUCAUC  UG AC AC u
          ||||||||| ||||||||||||  || || ||  
          guugugugG AGUAUUUAGUAG  AC UG ug a
cgucucaguc         A            UU  A  C  u 

>nve-mir-2040b (-47.40)   [nve-miR-2040b*:22-44] [nve-miR-2040b:52-74]

agaucau  ua  --u            U   C     C       c 
       ga  cc   accaccuUCAGG CAG UACGA ACGAGCG u
       ||  ||   |||||||||||| ||| ||||| ||||||| c
       cu  gg   uggugGAAGUCC GUC AUGCU UGCUUgc c
---auuu  gc  ucc            C   A     C       u 

>nve-mir-2043a (-30.60)   [nve-miR-2043a*:21-42] [nve-miR-2043a:50-71]

-  --au   auaucg       U      C         U    u 
 gu    cug      aaucucu AUAUCG CUUUUGAGG UAUU u
 ||    |||      ||||||| |||||| ||||||||| |||| c
 ca    gac      uuagaGA UAUGGC GAAAACUCC AUaa u
a  gguc   ---aca       U      A         C    u 

>nve-mir-2044 (-48.60)   [nve-miR-2044*:15-36] [nve-miR-2044:44-65]

a   - g                              a 
 ggu u aaugagcuUUAUCAAGAUAAAUGCCAUAAA u
 ||| | |||||||||||||||||||||||||||||| g
 cca g uuacucGAAAUAGUUCUAUUUACGGUAUuu u
a   u g                              u 

>nve-mir-2045 (-21.80)   [nve-miR-2045:22-45] [nve-miR-2045*:60-83]

ucuuauuaaugacaauaguuuUC      U     -GU         -  u 
                       CCAGAG GUUGA   UCAUACAAg au u
                       |||||| |||||   ||||||||| || c
                       GGUCUC UAAUU   GGUAUGuuc ug u
-acauaaaauaccuuagauACAU      -     AAU         g  u 

>nve-mir-2046 (-51.50)   [nve-miR-2046:22-45] [nve-miR-2046*:52-73]

agagu               aC                      U 
     aaauuuuauggcauu  AUCACUUCAUAGCUAUUUACUC u
     |||||||||||||||  ||||||||||||||||||||||  
     uuuaaaauaccguaA  UAGUGAAGUAUCGAUAAAUgag a
-cagu               CA                      a 

>nve-mir-2047 (-62.60)   [nve-miR-2047:29-50] [nve-miR-2047*:60-81]

aucc  gag    uuc                             G  G  u 
    gg   uaaa   guaacugcucaaUUCGCCGAGCAGAUGUC GA Ag u
    ||   ||||   ||||||||||||||||||||||||||||| || || c
    cc   guuu   uauugacgagUUAAGCGGCUCGUCUACAG CU uc a
agaa  --a    ---                             A  g  a 

>nve-mir-2048 (-45.70)   [nve-miR-2048*:8-28] [nve-miR-2048:63-82]

guauaaaG              A              acag c 
        GCGUUUUGUUUUAG UGUCUugagggaga    u g
        |||||||||||||| ||||||||||||||    |  
        CGCAAAACAAAGUC ACAgaacucccucu    a a
---aguAA              C              ggaa g 

>nve-mir-2049 (-46.40)   [nve-miR-2049:25-47] [nve-miR-2049*:60-81]

auc         c           C       C   A     GA   aaca 
   auccaugag cguauucaaug AAAUGCA GCA AUGAA  UGA    a
   ||||||||| ||||||||||| ||||||| ||| |||||  |||     
   uagguacuc gcauaaguuAC UUUACGU CGU UACUU  Gcu    u
---         u           A       A   G     -A   cagc 

>nve-mir-2050 (-33.10)   [nve-miR-2050*:21-43] [nve-miR-2050:52-74]

gucauuu   -      ag  C       C    C      C  ca 
       cau ggcgcg  aa CCGGGUC CAGU AUCAAA GU  u
       ||| ||||||  || ||||||| |||| |||||| ||   
       gua cugugc  UU GGUCUAG GUCG UAGUUU ca  u
-caauau   g      cu  U       U    U      A  cg 

>nve-mir-2043b (-30.30)   [nve-miR-2043b*:21-42] [nve-miR-2043b:50-71]

-  --au   auaucg       U      C         U    u 
 gu    cug      aaucucu AUAUCG CUUUUGAGG UAUU u
 ||    |||      ||||||| |||||| ||||||||| |||| c
 ca    gac      uuagaGA UAUGGC GAAAACUCC GUaa u
a  gguc   ---aca       U      A         C    u 

>nve-mir-2051 (-29.10)   [nve-miR-2051*:21-42] [nve-miR-2051:55-73]

auguac  g c  cc    aAA         C       UUU   ac 
      gg c cg  uaug   AUAGAAAAG UUCCGGU   uug  a
      || | ||  ||||   ||||||||| |||||||   |||   
      cc g gc  auac   UGUCUUUUC GAGGCCA   aac  u
cuaaga  a u  uu    cuG         U       --U   gc 

>osa-MIR1846c (-64.70)   [osa-miR1846c-5p:20-40] [osa-miR1846c-3p:49-69]

-auga  c         c        G         C     a 
     gc gccggaucu ccAGUGAG AGGCCGGGG CGCUg a
     || ||||||||| |||||||| ||||||||| |||||  
     cg cggccuagg GGUCGCUC UCUGGCCCC GUggc u
agaaa  -         c        G         A     c 

>cfa-mir-20b (-30.12)   [cfa-miR-20b:5-26]

-g    -A           G     G   ucugg 
  uacC  AAGUGCUCACA UGCAG UAg     g
  ||||  ||||||||||| ||||| |||     c
  augg  uucacgggugu auguc auc     u
ca    cc           g     -   ucuuu 

>cfa-mir-18b (-30.90)   [cfa-miR-18b:8-29]

        --    U    C   U     -------U    a 
ccuguguU  AAGG GCAU UAG GCAGU        Agug a
||||||||  |||| |||| ||| |||||        ||||  
ggacacgg  uucc cgua auc cguca        ucgc g
        cc    c    a   c     uccaagau    c 

>cfa-mir-18a (-27.30)   [cfa-miR-18a:14-35]

---gu         u   --   U   UC   U    A   -  aa u 
     gcuuuuugu cUA  AGG GCA  UAG GCAG UAg ug  g a
     ||||||||| |||  ||| |||  ||| |||| ||| ||  | g
     ugaagaaua ggu  ucc cgu  auc cguc auc ac  u a
uguau         c   cu   u   ga   c    -   u  ga u 

>cfa-mir-133c (-34.70)   [cfa-miR-133c:52-72]

--     uuu    a       aa  u  a        aacug 
  aaugc   gcua agcuggu  aa gg accaaauc     u
  |||||   |||| |||||||  || || ||||||||      
  uuacg   cgau UCGACCA  UU CC UGGUUuag     u
ag     ugu    G       AC  C  C        guaac 

>cfa-mir-133a (-40.00)   [cfa-miR-133a:53-74]

-      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

>cfa-mir-133b (-40.30)   [cfa-miR-133b:48-69]

-------       c        ca  c  a      u  g      
       cccugcu uggcuggu  aa gg accaag cc ucuuc 
       ||||||| ||||||||  || || |||||| || |||| c
       gggacga AUCGACCA  UU CC UGGUUU gg agagu 
aacgguc       c        AC  C  C      -  -      

>cfa-let-7a-2 (-39.40)   [cfa-let-7a:17-38]

c    uguu      uU   G   U             uagaa ua a 
 ugca    cccagg  GAG UAG AGGUUGUAUAGUU     u  c u
 ||||    ||||||  ||| ||| |||||||||||||     |  | c
 acgu    ggguuc  uuc auc uccgacaugucaa     a  g a
c    -ucu      cu   g   c             --uag gg a 

>cfa-let-7b (-27.70)   [cfa-let-7b:40-61]

------ gg  a   -    --  c  g       ggc 
      g  ac gcg gacc  cu cc caccccg   a
      |  || ||| ||||  || || |||||||    
      c  UG UGU UUGG  GA GG GUggggc   c
acggga uU  G   G    AU  U  A       ggc 

>cfa-mir-7-3 (-31.70)   [cfa-miR-7:25-47]

gagugguuguggucuagu      U     A  A       U      c  au 
                  gcugug GGAAG CU GUGAUUU GUUGUu ug  g
                  |||||| ||||| || ||||||| |||||| ||   
                  cgauac ccuuc ga cacugaa caacag au  u
-----------------g      u     -  -       -      u  ca 

>cfa-mir-10b (-36.30)   [cfa-miR-10b:20-41]

-------guaa     u        a    G     C          -Ug  au 
           cguug cuauauau CCCU UAGAA CGAAUUUGUG   gu  c
           ||||| |||||||| |||| ||||| ||||||||||   ||   
           guagc gguauaua gggg aucuu gcuuagacac   ua  c
acuucaaaaac     u        a    -     a          uga  ca 

>cfa-mir-34b (-30.60)   [cfa-miR-34b:14-35]

     cg    -guA       UAA    C       ccu u 
gugcu  guuu    GGCAGUG   UUAG UGAUUGu   c g
|||||  ||||    |||||||   |||| |||||||   |  
cacgg  caaa    ccgucac   aauc acuaaca   g c
     aa    acua       cuc    -       uuc u 

>cfa-mir-135a-1 (-43.42)   [cfa-miR-135a-5p:17-39]

agg         u u          UU            uuuua 
   ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
   ||||||||| | ||||||||||  ||||||||||||     u
   ggggcggca g ggugccgagg  uagggauauacu     g
---         u c          -u            cacuc 

>cfa-mir-135b (-47.54)   [cfa-miR-135b:15-37]

     --                   CAU          uugcug 
gcucu  gcuguggccUAUGGCUUUU   UCCUAUGUGA      u
|||||  |||||||||||||||||||   ||||||||||       
cgggg  ugacaucggguaccgaaaa   gggauguacu      u
     ag                   -uc          uaaucu 

>cfa-mir-153 (-33.60)   [cfa-miR-153:53-72]

agcggugg      -             gu       -a  aa 
        ccagug ucauuuuugugau  ugcagcu  gu  u
        |||||| |||||||||||||  |||||||  ||  a
        gguuac AGUGAAAACACUG  ACGUUga  cg  u
-------a      u             AU       cc  ag 

>cfa-mir-182 (-36.74)   [cfa-miR-182:18-41]

gcuug    c      uU       U -G      UCA      ugaggu 
     ccuc cgccgu  UUGGCAA G  UAGAAC   CACUgg      a
     |||| ||||||  ||||||| |  ||||||   ||||||       
     ggag guggua  aaccguu c  aucuug   guggcc      a
-----    c      uc       - ag      ---      uagggu 

>cfa-mir-184 (-27.90)   [cfa-miR-184:42-63]

-----c         c      ag     -    ug 
      cccuuauca uuuucc  ccagc uuug  a
      ||||||||| ||||||  ||||| ||||   
      GGGAAUAGU AAGAGG  GGUug gaau  c
guggaU         C      CA     u    cu 

>cfa-mir-187 (-33.70)   [cfa-miR-187:41-62]

----   g    a           - --c   -  cu 
    cuc ggcu caacacgggac c   ggg cg  g
    ||| |||| ||||||||||| |   ||| ||   
    gaG CCGA GUUGUGUUCUG G   ccc gc  c
cagg   G    C           U CUc   a  cu 

>cfa-mir-202 (-37.60)   [cfa-miR-202:9-30]

gu               -A           G   gu 
  uccuuuUUCCUAUGC  UAUACUUCUUU agg  c
  |||||||||||||||  ||||||||||| |||   
  ggggaaaaggguacg  auguggagaag ucc  u
-g               ga           -   gg 

>cfa-mir-205 (-34.72)   [cfa-miR-205:7-28]

      UC           C        ucucg 
cucuug  CUUCAUUCCAC GGAGUCUG     u
||||||  ||||||||||| ||||||||     a
gaggac  gaagugaggug cuuuagac     c
      uu           a        caacc 

>cfa-mir-210 (-43.50)   [cfa-miR-210:54-76]

--------cc      c    gg     a   - c  u      c  c -     
          uccagg gcag  cagcc cug c ca cgcaca ug g cugc 
          |||||| ||||  ||||| ||| | || |||||| || | ||| u
          gggucc uguc  GUCGG GAC G GU GCGUGU Ac c ggcc 
ccagcgcgac      c    uA     C   A U  -      C  c a     

>cfa-mir-214 (-67.62)   [cfa-miR-214:71-92]

ggccu      acgga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           U          CAC            cacuc 

>cfa-mir-215 (-31.00)   [cfa-miR-215:12-33]

u        a A  A        -U          u  g 
 guacagga a UG CCUACGAA  UGAUAGACAa uu g
 |||||||| | || ||||||||  |||||||||| || c
 uaugucuu u ac ggauguuu  acugucuguu ga u
-        a a  c        uu          u  a 

>cfa-mir-216a (-36.00)   [cfa-miR-216a:19-39]

--------    --   g  ag     u         CU   A      --a   -  u 
        gaug  gcu ug  uuggc UAAUCUCAG  GGC ACUGUG   gau gu c
        ||||  ||| ||  ||||| |||||||||  ||| ||||||   ||| ||  
        cuau  cga ac  aaucg auuaggguc  cug ugacac   cua ca a
ucccguuc    aa   g  -a     u         -u   g      ccc   a  u 

>cfa-mir-217 (-30.20)   [cfa-miR-217:14-37]

uu     c c  a  C     C          U -   aag 
  gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
  ||||| | || || ||||| |||||||||| | |||    
  cuacg c uc gu acgua uccuugacua c cug   a
-u     a u  c  u     a          c a   ggu 

>cfa-mir-222 (-38.70)   [cfa-miR-222:49-69]

------------  c   au              -     auc   ucuu 
            cc uca  ggcucaguagccag uguag   cug    u
            || |||  |||||||||||||| |||||   |||    u
            gg agu  cUGGGUCAUCGGUC ACAUC   gac    g
ucgaucuucuac  u   cu              U     GAu   uaau 

>cfa-mir-223 (-43.70)   [cfa-miR-223:68-88]

ccuggccuccu   -     a    cc u              gaguua       cau 
           gca gugcc cacu  g guauuugacaagcu      gacacuc   g
           ||| ||||| ||||  | ||||||||||||||      |||||||   u
           cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-----------   a     c    aC C              ------       aag 

>cfa-mir-301a (-31.00)   [cfa-miR-301a:50-72]

     aa  a     c    ---u          ----a       
cugcu  cg augcu ugac    uuauugcacu     cuguac 
|||||  || ||||| ||||    ||||||||||     ||||| u
gacga  gu uaCGA ACUG    GAUAACGUGA     gacauu 
     aa  c     A    UUAU          Cgauc       

>cfa-mir-301b (-32.00)   [cfa-miR-301b:43-65]

----   a      c      ---g        a  gug u 
    ccc ggugcu ugacga    guugcacu cu   c c
    ||| |||||| ||||||    |||||||| ||   | u
    ggg cuaCGA ACUGUU    UAACGUGA ga   g g
acca   g      A      AUAG        C  --a a 

>cfa-mir-302a (-33.50)   [cfa-miR-302a:6-28]

   c    U         U           gaa 
cca cACU AAACGUGGA GUACUUGCUuu   a
||| |||| ||||||||| |||||||||||   c
ggu guga uuuguaccu cgugaaugaaa   u
   a    u         u           aac 

>cfa-mir-302b (-28.80)   [cfa-miR-302b:10-31]

cucc    a   UU               U  ---   a 
    cuuu ACU  AACAUGGAAGUACUU Cu   uug c
    |||| |||  ||||||||||||||| ||   ||| u
    gaag uga  uuguaccuucgugaa ga   aac u
---u    a   uu               u  uaa   u 

>cfa-mir-302c (-32.00)   [cfa-miR-302c:8-29]

    ug  UU             C    -G  u 
ccuu  cU  AACAUGGGGGUAC UGCU  ug a
||||  ||  ||||||||||||| ||||  || a
ggag  ga  uuguaccuucgug auga  ac a
    gu  cu             a    aa  a 

>cfa-mir-302d (-27.23)   [cfa-miR-302d:6-27]

--  u u   UU                Cugugac 
  cc c ACU  AACAUGGAGGCACUUG       a
  || | |||  ||||||||||||||||       u
  gg g uga  uuguaccuucgugaau       g
gu  u -   uu                aaaaaua 

>cfa-mir-367 (-27.60)   [cfa-miR-367:6-27]

    g           UA     CUCUg      a 
ccau ACUGUUGCUAA  UGCAA     uucaau c
|||| |||||||||||  |||||     ||||||  
ggua ugguaacgauu  acguu     agguua a
    g           uc     ----a      a 

>cfa-mir-489 (-42.50)   [cfa-miR-489:52-73]

       c     g            gc c    ua     a 
guggcag uuggu gccguaugugug  g cauu  cuuga c
||||||| ||||| ||||||||||||  | ||||  |||||  
caucguc aauCG CGGCAUAUACAC  C GUGa  ggauu c
       a     G            UA A    --     u 

>cfa-mir-96 (-44.60)   [cfa-miR-96:14-36]

-      gg  g  U        A      UU      ---   uc 
 cugcuu  cc au UUGGCACU GCACAU  UUGCUu   gug  u
 ||||||  || || |||||||| ||||||  ||||||   |||   
 ggcgaa  gg ua aaccguga cgugua  aacgag   cgc  c
g      aa  g  u        -      cu      ucu   cu 

>cfa-mir-103-2 (-28.10)   [cfa-miR-103:48-70]

uu  g      --   u  u           ----    ua 
  gu cuuuca  gcu cu uacagugcugc    cuug  g
  || ||||||  ||| || |||||||||||    ||||  c
  ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
-c  a      AU   -  C           Aacu    uu 

>cfa-mir-33b (-57.30)   [cfa-miR-33b:16-35]

---  ---    -   c   c  -          UU         g  ag 
   gc   gggc ggc ccg gG UGCAUUGCUG  GCAUUGCac ug  u
   ||   |||| ||| ||| || ||||||||||  ||||||||| ||  g
   cg   cccg ccg ggc cc acgugacggc  cgugacgug gc  a
cca  guc    g   a   -  g          uc         g  gc 

>cfa-mir-145 (-37.42)   [cfa-miR-145:11-33]

-----  u     c  UC    U  C            uagau 
     ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
     || ||||| ||  |||| || ||||||||||||     c
     ac ggagu uc  guca aa gguccuuagggg     u
uuggu  u     -  uu    u  a            uagaa 

>cfa-mir-196a-1 (-30.90)   [cfa-miR-196a:15-36]

-------      ga    a UA   A    C         - Gc u  a 
       acugcu  guga u  GGU GUUU AUGUUGUUG G  c gg u
       ||||||  |||| |  ||| |||| ||||||||| |  | ||  
       ugacgg  cacu a  cca caaa uacaacaac c  g uc u
ucgucau      --    c gc   c    u         a aa -  u 

>cfa-mir-200b (-34.70)   [cfa-miR-200b:9-30]

-----   a     ---   -    UG     C      u  ug 
     gcc ucgcC   AUC UUAC  GGCAG AUUGGA gg  u
     ||| |||||   ||| ||||  ||||| |||||| ||  c
     cgg ggcgg   uag aaug  ccguc uaaucu cu  a
cgucc   -     cag   u    gu     a      -  gg 

>cfa-mir-200a (-43.20)   [cfa-miR-200a:16-37]

c    - c   g        -             C    uu  uu 
 uggg c ucu ugggCAUC UUACCGGACAGUG UGGA  uc  g
 |||| | ||| |||||||| ||||||||||||| ||||  ||  g
 accc g gga acuuguag aauggucugucac aucu  ag  c
c    a u   a        c             a    -c  uu 

>cfa-mir-203 (-48.00)   [cfa-miR-203:56-77]

--  c   g       u c         u    g    a     - ug 
  cc ggc cgcuggg c agugguucu aaca uuca caguu c  u
  || ||| ||||||| | ||||||||| |||| |||| ||||| |   
  gg ccg gcggccc G UCACCAGGA UUGU AAGU Guuaa g  a
gc  c   g       c A         U    A    -     c cg 

>cfa-mir-208a (-27.60)   [cfa-miR-208a:42-63]

---a  c ug       g     gg      c  a 
    cg a  agcuuuu gcucg  uuauac ug u
    || |  ||||||| |||||  |||||| || g
    gu U  UCGAAAA CGAGC  AAUAug ac c
acug  - GU       A     AG      c  u 

>cfa-mir-208b (-30.60)   [cfa-miR-208b:46-67]

c        g          c   cg        cu 
 cucucagg aagcuuuuug ucg  uuauguuu  c
 |||||||| |||||||||| |||  ||||||||  a
 gggagucU UUUGGAAAAC AGC  AAUAuaag  u
-        G          A   AG        cc 

>cfa-mir-451 (-42.10)   [cfa-miR-451:16-37]

u    g        gA                 A 
 uggg auggcgag  AACCGUUACCAUUACUG G
 |||| ||||||||  |||||||||||||||||  
 accc ugucguuc  uugguaaugguaaugau U
-    a        uc                 U 

>cfa-mir-375 (-30.80)   [cfa-miR-375:41-62]

-----   c    a      ccu  c     c  gac 
     gcc cgcg cgagcc   cg acaaa cg   c
     ||| |||| ||||||   || ||||| ||    
     cgg GUGC GCUCGG   GC UGUUU gc   u
gggga   A    -      CUU  U     u  gag 

>cfa-mir-190a (-32.50)   [cfa-miR-190a:15-36]

u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cguuc g gaca c  uauacaaacuauaua  ucaac    u
c     u u    u cu               --     cuaa 

>cfa-mir-190b (-29.40)   [cfa-miR-190b:11-31]

u   u     -U               G     -   aa 
 gcu cugug  GAUAUGUUUGAUAUU GGUUg uuu  u
 ||| |||||  ||||||||||||||| ||||| |||   
 uga gacau  uuauacaagcuauaa ucaac aag  u
g   c     uc               a     u   ga 

>cfa-mir-147 (-29.00)   [cfa-miR-147:53-74]

a     u    c   ug   a    g       aacuagauua     
 cucua gaau uag  gaa cauu cugcaca          ugga 
 ||||| |||| |||  ||| |||| |||||||          ||| u
 gggau uuua AUC  CUU GUAA GGCGUGU          acca 
c     u    c   GU   C    A       ---------G     

>cfa-mir-490 (-32.60)   [cfa-miR-490:56-77]

aaaguucauugu      c      --         g   cac   u 
            ucgaca caugga  ucuccaggu ggu   guu a
            |||||| ||||||  ||||||||| |||   |||  
            aguuGU GUACCU  GGAGGUCCA Cca   uag g
------------      C      CA         A   -ca   a 

>cfa-mir-211 (-41.32)   [cfa-miR-211:22-43]

-   -gccau     uug     U         CA     U    agggu 
 cug      gugac   ugggc UCCCUUUGU  UCCUU GCCU     u
 |||      |||||   ||||| |||||||||  ||||| ||||     c
 gac      cacug   acucg ggggaaacg  aggga cggg     u
c   acucuc     uug     u         ac     -    gagag 

>cfa-mir-141 (-41.20)   [cfa-miR-141:58-78]

g    cucu   u       --    u        -   ugg  ua 
 ccgg    ggg ccaucuu  ccag acaguguu gga   uc  g
 ||||    ||| |||||||  |||| |||||||| |||   ||  u
 ggcc    ccc GGUAGAA  GGUC UGUCACAA ccu   ag  c
g    ----   -       AU    -        u   cga  ca 

>cfa-mir-514 (-30.70)   [cfa-miR-514:42-64]

---------g   c      -     a   g       u   a 
          uac cuacuc cagag gug caaucau ugu a
          ||| |||||| ||||| ||| ||||||| |||  
          aug GGUGAG GUCUC CAC GUUAGUg aua u
acaguacgua   A      U     -   A       u   u 

>cfa-mir-95 (-36.70)   [cfa-miR-95:49-70]

a   c     ac            uu         gaga 
 aca agugg  gcucaauaaaug  uguugaauu    u
 ||| |||||  ||||||||||||  |||||||||    g
 ugu ucacc  CGAGUUAUUUAU  GCAACUUaa    c
g   c     cA            GG         auua 

>cfa-mir-105a (-43.40)   [cfa-miR-105a:13-32]

ugu         U  A          UC        g ug 
   gcaucguag CA AUGCUCAGAC  CUGUggug c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcauc gu uacgaguuug  ggcaccac g  c
auc         -  g          ua        - ua 

>cfa-mir-105b (-36.60)   [cfa-miR-105b:13-32]

ugu         U  A          UCC  G    c   u 
   gcaucaugg CA AUGCUCAGAC   UU gugg ugc u
   ||||||||| || ||||||||||   || |||| |||  
   ugugguauc gu uacgaguuug   aa uacc acg a
auc         -  g          --u  g    -   u 

>cfa-mir-188 (-39.80)   [cfa-miR-188:15-36]

u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  gu  gggacguac  ccuccc     g u
c    u  -u   ac  uu         ac      caaaa u 

>cfa-mir-220b (-38.50)   [cfa-miR-220b:11-31]

u  ua   --cu  A  -        --C        g    acg 
 ug  ggg    CC CC ACCGUGUC   GACACCUu ggcg   g
 ||  |||    || || ||||||||   |||||||| ||||   c
 gc  ucc    gg gg uggcguag   uuguggaa ucgc   a
g  gc   ucau  -  c        uac        g    acu 

>cfa-mir-220a (-30.80)   [cfa-miR-220a:11-31]

uugu   - cu  A  -        --C        g  - ga g 
    agg g  CC CC ACUGUGUC   GACACCUu gg g  g g
    ||| |  || || ||||||||   |||||||| || |  |  
    ucc c  gg gg uggcguag   uuguggaa uc c  c c
---c   u au  -  c        uac        g  a ac a 

>cfa-mir-134 (-35.20)   [cfa-miR-134:8-29]

c     gU        U  -A   G    Gca   a 
 agggu  GUGACUGG UG  CCA AGGG   agc c
 |||||  |||||||| ||  ||| ||||   ||| u
 uccca  cacugauc ac  ggu uccc   uug c
c     ac        c  cg   g    -ac   u 

>cfa-mir-149 (-44.82)   [cfa-miR-149:15-37]

gccggc    g   U U G      G     A     gugug 
      gccc ggc C G CUCCGU UCUUC CUCCC     u
      |||| ||| | | |||||| ||||| |||||     c
      cggg ucg g c ggggca ggagg gaggg     c
---cga    g   u u g      g     -     aggag 

>cfa-mir-299 (-42.30)   [cfa-miR-299:7-28]

     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucuu gccaaauggcaggguguaugua  a
     c                      ug 

>cfa-mir-362 (-30.00)   [cfa-miR-362:2-25]

---------           ACC        -A Ug  a 
         gAAUCCUUGGA   UAGGUGUG  G  cu u
         |||||||||||   ||||||||  |  || u
         cuuaggaacuu   auccacac  c  gg u
ucggagaaa           ---        aa gu  c 

>cfa-mir-376b (-29.50)   [cfa-miR-376b:61-82]

agucuuuc         u    g      a     u     u   - guga 
        uuugguauu aaaa guggau uuccu cuaug uua c    u
        ||||||||| |||| |||||| ||||| ||||| ||| |     
        aaacuauga uuUU UACCUA AAGGA GAUAC Aau g    u
---gucgu         c    G      A     -     U   a auac 

>cfa-mir-376c (-32.52)   [cfa-miR-376c:16-37]

u        u    g     UA     U         uguua 
 uugguauu aaaa GUGGA  UUCCU CUAUGUUUA     u
 |||||||| |||| |||||  ||||| |||||||||     u
 aacuauga uuuu caccu  aagga gauacaaau     u
a        c    g     ua     -         uggua 

>cfa-mir-370 (-45.10)   [cfa-miR-370:48-69]

       g         ca gu   u    u   a  g 
agacaga aggccaggu  c  cuc gcag uac ca c
||||||| |||||||||  |  ||| |||| ||| || u
ucugucu ucUGGUCCA  G  GGG CGUC Gug gu c
       g         AG UG   U    C   a  a 

>cfa-mir-377 (-27.80)   [cfa-miR-377:7-28]

uu              C   -    A    - uuu 
  gagcAGAGGUUGCC UUG GUGA UUCg c   a
  |||||||||||||| ||| |||| |||| |   u
  uuuguuuucaacgg aac cacu aagu g   u
-g              a   a    -    u uau 

>cfa-mir-381 (-36.10)   [cfa-miR-381:49-70]

      a  c   g        u        --g   u 
uacuua ag gag uugcccuu guauauuc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   cag u
      G  U   G        -        aua   u 

>cfa-mir-340 (-31.10)   [cfa-miR-340:16-37]

uu     u au   aU       -CAA      U    g     ug 
  guacc g  gcg  UAUAAAG    UGAGAC GAUU ucaug  u
  ||||| |  |||  |||||||    |||||| |||| |||||  c
  caugg c  ugc  auauuuc    acucug cuag ggugu  g
-c     u cg   cg       auug      c    -     ug 

>cfa-mir-330 (-42.82)   [cfa-miR-330:18-39]

cuuu    auca           --    -    U   AG    ugcaa 
    ggcg    cugccUCUCUG  GGCC UGUG CUU  GCuc     g
    ||||    |||||||||||  |||| |||| |||  ||||     a
    ucgc    gacggagagac  ccgg acac gaa  cgag     u
---c    ----           gu    c    -   -a    ccaac 

>cfa-mir-326 (-58.20)   [cfa-miR-326:56-75]

----       g            c       uugu  a    gg g u 
    ucugucu uugggcuggagg agggccu    ga ggcg  u g g
    ||||||| |||||||||||| |||||||    || ||||  | |  
    aggcgga gacccGACCUCC UCCCGGG    CU CCgc  g c a
acuu       -            U       ---U  -    ua g u 

>cfa-mir-331 (-38.92)   [cfa-miR-331:61-81]

gaguuugguuuugu       u        u    u       au ccaga 
              uuggguu guucuagg augg cccaggg  c     u
              ||||||| |||||||| |||| |||||||  |     c
              aauccaa cAAGAUCC UAUC GGGUCCC  g     a
--------------       c        -    C       CG accaa 

>cfa-mir-324 (-30.00)   [cfa-miR-324:1-23]

---C   U       -      ---   -    ag u 
    GCA CCCCUAG GGCAUU   GGU GUgg  c g
    ||| ||||||| ||||||   ||| ||||  |  
    ugu ggggguc ucgugg   ccg cacc  g g
cuga   u       g      acc   u    ca a 

>cfa-mir-325 (-36.70)   [cfa-miR-325:12-34]

--------------           CC   U                Uu gug 
              agugcuugguu  UAG AGGUGUUCAGUAAGUG  u   a
              |||||||||||  ||| ||||||||||||||||  |    
              ucacgaacuaa  auc uccacgaguuauuugc  a   c
ggucucggaucgug           cu   c                uu aua 

>cfa-mir-346 (-50.40)   [cfa-miR-346:20-42]

-g u      ggu     u    CU    -  AUG           g u 
  g cucugu   gggcg cUGU  GCCC GC   CCUGCCUCUuu u g
  | ||||||   ||||| ||||  |||| ||   ||||||||||| | c
  c gagacg   uccgu gacg  cggg cg   ggacggaggaa g u
gg -      -gg     c    uc    u  --g           g c 

>cfa-mir-329b (-32.60)   [cfa-miR-329b:50-71]

     cu           uu ug   uuc      u  aa 
gguac  gaagagagguu  c  ggu   uguuuc uu  u
|||||  |||||||||||  |  |||   |||||| ||   
cuaug  cuUUUCUCCAA  G  CCA   ACAAag ag  g
     ac           UU GU   --C      u  ga 

>cfa-mir-452 (-38.30)   [cfa-miR-452:14-35]

  u          AAC G        G  A       cuu   a 
gc aagcacuuac   U UUUGCAGA GA ACUGAga   ugu a
|| ||||||||||   | |||||||| || |||||||   |||  
cg uucgugaaug   a aaacgucu cu ugacucu   aca c
  u          --a g        a  c       ---   u 

>cfa-mir-483 (-37.30)   [cfa-miR-483:41-61]

-------            aaa      c   - uu  a 
       gaggacgggagg   ggagga gug g  uc u
       ||||||||||||   |||||| ||| |  || g
       cUUCUGCCCUCC   CCUCCU CAC c  gg c
ccuucuc            ---      -   U cu  a 

>cfa-mir-487a (-30.90)   [cfa-miR-487a:49-69]

      u     g   uua      c    -    cu  a 
gguacu gaaga ugg   ucccug ugug uucg  gu u
|||||| ||||| |||   |||||| |||| ||||  ||  
cuauga uuuuU ACC   AGGGAC AUAC AAgc  ua u
      c     G   UAC      -    U    ag  u 

>cfa-mir-488 (-28.70)   [cfa-miR-488:14-34]

    a  a   cu  C   U      A  C        g u 
gaga uc ucu  CC AGA AAUGGC CU UCAAacaa u u
|||| || |||  || ||| |||||| || |||||||| | u
cucu ag aga  gg ucu uuaucg ga aguuuguu a c
    c  a   cu  u   -      -  a        g a 

>cfa-mir-432 (-34.30)   [cfa-miR-432:14-36]

ugacuccu     U U     UA       G     a   uua  uu 
        ccagg C UGGAG  GGUCAUU GGUGG ucc   au  c
        ||||| | |||||  ||||||| ||||| |||   ||   
        gguuc g accuc  ucgguag ucacc ggg   ua  c
------gc     u u     -c       g     -   -ug  uc 

>cfa-mir-494 (-34.10)   [cfa-miR-494:48-69]

      c            gu      -   c   -  uuu 
gauacu gaaggagagguu  ccgugu ugu uuc uc   a
|||||| ||||||||||||  |||||| ||| ||| ||   u
cuauga uuuuuuCUCCAA  GGCACA ACA AAG ag   u
      -            AG      U   -   U  uau 

>cfa-mir-496 (-35.50)   [cfa-miR-496:52-73]

---------aguca      u   u        u     gu         uua 
              gguacu gaa ggagguug ccaug  guguucauu   u
              |||||| ||| |||||||| |||||  |||||||||    
              ucauga cuu cCUCUAAC GGUAC  UAUGAGUag   u
ggguucuucuuaaa      -   u        C     AU         uau 

>cfa-mir-504 (-48.40)   [cfa-miR-504:13-34]

   -g    -            G     A    -A  u   u 
gcu  cugu ugggAGACCCUG UCUGC CUCU  UC gua g
|||  |||| |||||||||||| ||||| ||||  || |||  
cgg  gaca acccuuugggac ggacg gagg  ag cau c
   ga    u            g     c    ga  u   u 

>cfa-mir-505 (-36.10)   [cfa-miR-505:7-28]

-------   u           G    A        ucug 
       cag ggGGGAGCCAG AAGU UUGAUGUu    c
       ||| ||||||||||| |||| ||||||||    c
       guc cuccuuugguc uuca aacugcga    a
cuacgag   u           g    c        uuug 

>cfa-mir-539 (-29.60)   [cfa-miR-539:8-29]

    ug          A      G    ----     ug 
uacu  aGGAGAAAUU UCCUUG UGUG    Uucgc  u
||||  |||||||||| |||||| ||||    |||||  g
auga  uuuucuuuaa aggaac auac    gagug  u
    gu          c      -    uaag     uu 

>cfa-mir-544 (-35.12)   [cfa-miR-544:55-76]

auuuu      cua    u           -     u   gauuu 
     caucac   ggga cuuguuaaaag gcaga ucu     a
     ||||||   |||| ||||||||||| ||||| |||     g
     guagug   ccCU GAACGAUUUUU CGUCU Aga     g
--auc      -aa    U           A     U   accag 

>cfa-mir-545 (-34.22)   [cfa-miR-545:25-45]

cccag    ------g   a         - U A          AUUG     auaaa 
     ccug       cac uuaguaggc c C GUAAAUGUUU    GAUGa     u
     ||||       ||| ||||||||| | | ||||||||||    |||||     g
     ggac       gug aaucguccg g g uauuuacaaa    cuacu     a
-----    accucua   g         u u c          -caa     cagua 

>cfa-mir-551a (-50.30)   [cfa-miR-551a:61-81]

ggggacug    - ug   c        c         aag    - u ug 
        ccag g  acc uggaaauc agagugggu   gccu g c  a
        |||| |  ||| |||||||| |||||||||   |||| | |  u
        gguc c  ugg ACCUUUGG UCUCACCCA   CGga c g  u
-------a    c gu   u        U         --G    u u ug 

>cfa-mir-551b (-43.90)   [cfa-miR-551b:57-77]

gugc    c     ca                 - -aga    g g 
    ucuc uggcc  ugaaaucaagugugggu g    ccug u c
    |||| |||||  ||||||||||||||||| |    |||| |  
    agag gucgg  ACUUUGGUUCAUACCCA C    gggc a a
--ua    c     aG                 G Ggaa    g c 

>cfa-mir-568 (-27.70)   [cfa-miR-568:13-32]

-    a      u        A         ACuucc         c 
 auac cuauau AUGUAUAA UGUAUACAC      uauauauau c
 |||| |||||| |||||||| |||||||||      |||||||||  
 ugug gauaug uacauauu auauaugug      auauauaua a
g    -      -        -         ------         u 

>cfa-mir-578 (-28.20)   [cfa-miR-578:9-29]

----  --             U      G    G  u 
    cc  aaguagCUUCUUG GCUCUA AUUG Ug u
    ||  ||||||||||||| |||||| |||| || u
    gg  uucguugaagaac ugaggu ugau ac u
cuag  au             -      g    -  u 

>cfa-mir-582 (-34.04)   [cfa-miR-582:11-32]

-----         uUA            CA     Uaaucu 
     acucuuugg   CAGUUGUUCAAC  GUUAC      a
     |||||||||   ||||||||||||  |||||       
     ugggaaacc   gucaacaaguug  caaug      g
aaacg         caa            ac     uuaauc 

>cfa-mir-589 (-27.00)   [cfa-miR-589:6-27]

-g  -   G   -   -A      A  A    u   u 
  gc ucU AGA ACC  UGUCUG UC GAGc ggg a
  || ||| ||| |||  |||||| || |||| ||| c
  cg aga ucu ugg  acagac ag cuug ucc u
ga  c   a   c   cc      a  a    -   g 

>cfa-mir-592 (-41.10)   [cfa-miR-592:18-40]

u   --a     c     cA        A    C       -     g 
 gau   uuaug cauga  UUGUGUCA UAUG GAUGAUG Ugugu a
 |||   ||||| |||||  |||||||| |||| ||||||| |||||  
 cua   aaugc guacu  aacgcagu gugc cuacugc acacg u
a   cag     a     ac        g    a       g     g 

>cfa-mir-599 (-37.80)   [cfa-miR-599:61-80]

aaagaccugcu     -ca   u                 gg     -   u 
           gucca   gug guuugauaagcugacau  gacag gga u
           |||||   ||| |||||||||||||||||  ||||| ||| c
           uaggu   uac CAAACUAUUUGACUGUG  UUGuc cuu u
--------cag     cca   c                 --     a   u 

>cfa-mir-615 (-54.90)   [cfa-miR-615:17-35]

ucgggag   c          UC     A      u u    g ug 
       ggg gggagGGGGG  CCCGG GCUCGG c cgag g  c
       ||| ||||||||||  ||||| |||||| | |||| |  u
       ccc cccucucccu  gggcc cgagcc g gcuu u  u
-------   -          cu     -      u -    g ua 

>cfa-mir-628 (-36.40)   [cfa-miR-628:23-44]

auagcugu  u   a      cA  -   A   A             aaaa 
        ug guc cuuccu  UG CUG CAU UUUACUAGAGGgu    u
        || ||| ||||||  || ||| ||| |||||||||||||     
        ac cgg gaaggg  gc gac gug gaaugaucuucca    u
-------u  u   -      aa  u   g   a             auaa 

>cfa-mir-631 (-31.20)   [cfa-miR-631:3-22]

--------cc  -   -     -A   C       c  a 
          GA CCU GGCCC  GAC UCAGCcc au g
          || ||| |||||  ||| ||||||| || c
          cu gga ccggg  cug agucggg ua u
accugcuccc  c   a     ga   -       -  g 

>cfa-mir-632 (-46.60)   [cfa-miR-632:60-78]

c   uc       ---a   -   g       -    g  g    cgag   g 
 gcc  cggccgc    gug ccu acgggag caga cg cgaa    ggc u
 |||  |||||||    ||| ||| ||||||| |||| || ||||    |||  
 cgg  gccggug    cgc GGG UGUCCUU GUCU GU Guuu    ccg c
-   uu       cugg   A   -       U    -  -    --ua   g 

>cfa-mir-653 (-35.70)   [cfa-miR-653:12-32]

------      cuu              U     U     ca  cu 
      ucauuc   caGUGUUGAAACAA CUCUA UGaac  gg  c
      ||||||   |||||||||||||| ||||| |||||  ||  c
      aguaag   guuauaacuuuguu gaggu acuug  cc  a
uagaau      aac              u     c     aa  aa 

>cfa-mir-758 (-27.10)   [cfa-miR-758:50-71]

cu      a    --a    u      aga   c   - uuu 
  ggguac ugag   uggu gaccag   gca acg c   a
  |||||| ||||   |||| ||||||   ||| ||| |   u
  ucuaug acuc   AUCA CUGGUC   UGU Ugc g   u
--      -    CCA    C      CAG   U   c ugu 

>cfa-mir-671 (-42.20)   [cfa-miR-671:50-70]

cagg      a   a      ga           -u   g 
    aagagg gga gcccug  ggggcuggagg  gau g
    |||||| ||| ||||||  |||||||||||  |||  
    uucuCC CCU CGGGAC  UCUUGGCCUcc  uug a
----      A   -      --           uu   u 

>cfa-mir-454 (-27.10)   [cfa-miR-454:44-65]

-          ---         ----   --u     g 
 agaacccuau   cgauauugu    cuc   gcugu u
 ||||||||||   |||||||||    |||   |||||  
 uuuuGGGAUA   GUUAUAACG    gag   cgaua a
g          UUC         UGAU   ucu     a 

>cfa-mir-802 (-34.20)   [cfa-miR-802:17-39]

-uu      u       C   A          A       -  cc 
   cuauua uuguacu AGU ACAAAGAUUC UCCUUGU gu  g
   |||||| ||||||| ||| |||||||||| ||||||| ||  u
   gauaau aauguga uca uguuucuaag aggaaca cg  c
guc      u       u   c          -       a  aa 

>cfa-mir-300 (-29.90)   [cfa-miR-300:6-27]

   a    A      G  A     C       ug aug 
gcu cUUG AGAGAG UU UCCUU GUguguu  u   a
||| |||| |||||| || ||||| |||||||  |   u
cga gagc ucucuc aa aggaa cguauaa  a   u
   g    c      g  c     -       gu aug 

>cfa-mir-874 (-37.20)   [cfa-miR-874:47-68]

--      cug   c   a  ca        a   -a a 
  uuagcc   cgg ccc cg  ccagggua gag  g c
  ||||||   ||| ||| ||  |||||||| |||  | u
  ggucgg   GCC GGG GC  GGUCCCGU cuu  c c
cg      ucA   A   A  CC        C   cg u 

>cfa-mir-875 (-28.50)   [cfa-miR-875:8-29]

-----    u  UAU        U  A       uucu 
     gugg ac   ACCUCAGU UU UCAGGUG    u
     |||| ||   |||||||| || |||||||    u
     cacu ug   uggaguca aa gguccac    a
caagu    u  ugu        u  a       uaaa 

>cfa-mir-876 (-42.70)   [cfa-miR-876:11-32]

u    ug         U                aucuaa  u 
 gaag  cugUGGAUU CUUUGUGAAUCACCAu      gc a
 ||||  ||||||||| ||||||||||||||||      ||  
 cuuc  gauacuuaa gaaacauuugguggug      ug a
a    gu         u                -----g  u 

>cfa-mir-885 (-49.30)   [cfa-miR-885:11-32]

--   c     c           A  -         cu 
  ccg gcucu UCCAUUACACU CC CUGCCUCUu  c
  ||| ||||| ||||||||||| || |||||||||   
  ggc cgaga aggugaugugg gg gacggagag  c
ug   a     u           -  c         ua 

>cfa-mir-665 (-34.61)   [cfa-miR-665:38-57]

-uc    -------     c       --ac     gc 
   ccgc       ggccu agccucc    ccggg  u
   ||||       ||||| |||||||    |||||   
   ggcg       CCGGA UCGGAGG    ggccu  c
guc    gcacUCC     A       ACCA     gu 

>cfa-mir-207 (-38.90)   [cfa-miR-207:45-67]

ca    -c      cu  g          -g      
  gggg  gagggg  gc gggggagcgg  gcgga 
  ||||  ||||||  || ||||||||||  |||| g
  ccCU  CUCCUC  UG CCUCUUCGcc  cgucg 
--    UC      UC  G          gg      

>cfa-mir-761 (-47.20)   [cfa-miR-761:15-36]

uggcaag                       G  A  g 
       aggaggaGCAGCAGGGUGAAACU AC CA u
       ||||||||||||||||||||||| || ||  
       uccuccucgucguuucacuuuga ug gu u
-----ag                       g  -  c 

>cfa-mir-764 (-40.40)   [cfa-miR-764:14-32]

-----------    ua  a     G   U    -  U        g  cu g 
           aauc  gg ggcaG UGC CACU UG CCUCCUcc ug  u g
           ||||  || ||||| ||| |||| || |||||||| ||  | a
           uuag  cc cuguc acg guga ac ggaggagg ac  a a
gguugcuuuag    ua  a     a   -    u  c        g  au a 

>cfa-mir-759 (-29.50)   [cfa-miR-759:30-51]

ggauuau             cc     u   AG          ----AU      
       aauaaauuaaaug  uaaac gGC  AGUGCAAACA      UUUGC 
       |||||||||||||  ||||| |||  ||||||||||      |||| C
       uuguuuaauuuac  auuug ucg  ucacguuugu      agacu 
-------             aa     -   -g          aaaucu      

>cfa-mir-718 (-47.70)   [cfa-miR-718:44-64]

-------      g -      caa  u  c      - c 
       gcggcg c ggcggg   ga gg ggcggg c c
       |||||| | ||||||   || || |||||| |  
       cGCCGC G CCGCCC   CU Cc ccgccc g g
cggagca      G G      CGC  U  -      c g 

>cfa-mir-872 (-27.42)   [cfa-miR-872:8-28]

u              -GUGU   C   A   uucau 
 uguuagAAGGUUAU     UAG UCA Ggc     u
 ||||||||||||||     ||| ||| |||     a
 gcaaucuuccgaug     auc agu ccg     u
g              aaguu   c   -   uccuu 

>bta-mir-489 (-34.00)   [bta-miR-489:52-73]

gu     c     g            gc c   cua       
  ggcag uuggu gucguaugugug  g cau   cuggaa 
  ||||| ||||| ||||||||||||  | |||   ||||| c
  ucguc aauCA CGGUAUAUACAC  C GUG   gauuug 
--     a     G            UA A   -ag       

>bta-mir-220d (-42.10)   [bta-miR-220d:11-31]

u  ua   --cu  A  -        -   -      g    a    
 ug  ggg    CC CC ACCGUGUC UGA CACCUu ggcg ggg 
 ||  |||    || || |||||||| ||| |||||| |||| || c
 gc  ucc    gg gg uggcguag acu guggaa ucgc cca 
g  gc   ucau  -  c        u   u      g    a    

>bta-mir-1224 (-46.60)   [bta-miR-1224:1-21]

G      CUC         A   --u   --    --c   g  c 
 UGAGGA   GGGAGGUGG Ggg   ggc  gcug   cag gc a
 ||||||   ||||||||| |||   |||  ||||   ||| ||  
 acuccu   uccuccacc ccc   ucg  cgac   guc cg g
g      cuc         c   ucu   cu    ucu   a  g 

>bta-mir-376b (-29.50)   [bta-miR-376b:56-77]

-uuc         u    g      a     u     u   - guga 
    uuugguauu aaaa guggau uuccu cuaug uua c    u
    ||||||||| |||| |||||| ||||| ||||| ||| |     
    aaacuauga uuUU UACCUA AAGGA GAUAC Aau g    u
ucgu         c    G      A     -     U   a auac 

>bta-mir-376d (-27.90)   [bta-miR-376d:50-70]

--     uu    g  a         u         cgg   u 
  gguau  aaaa gu gauuuuccu cuaugauua   guu g
  |||||  |||| || ||||||||| |||||||||   |||  
  cuaug  uuuU CA CUAAAAGGA GAUACUAau   uag g
aa     gc    A  C         -         ---   u 

>bta-mir-376c (-32.52)   [bta-miR-376c:16-37]

u        u    g     UA     U         uguua 
 uugguauu aaaa GUGGA  UUCCU CUAUGUUUA     u
 |||||||| |||| |||||  ||||| |||||||||     u
 aacuauga uuuu caccu  aagga gauacaaau     u
a        c    g     ua     -         uggug 

>bta-mir-764 (-28.00)   [bta-miR-764:14-32]

-----------    -    a gc  G   U  C  -GU        acg  ua 
           aauc uagu g  aG UGC CA UC   CCUUCUcc   gu  a
           |||| |||| |  || ||| || ||   ||||||||   ||  a
           uuag auca c  uc acg gu ag   ggaggagg   ca  a
gguuucuuuug    u    - ua  a   -  a  acc        -ga  ua 

>bta-mir-220e (-35.60)   [bta-miR-220e:23-43]

--------------------gccagcacggcauuguagggcuCCACCACA      GA      
                                                  GUGUCC  CACCU 
                                                  ||||||  |||| u
                                                  uacggg  guggu 
cguucuaggcgcuccucauggggcuggcguaggacuugagcaagucgcac      -a      

>bta-mir-220c-2 (-45.40)   [bta-miR-220c:23-44]

--gacaggguggcguuguagggcuCCACC        --         g    agg 
                             ACCGUGUC  GGACACCUU ggcg   g
                             ||||||||  ||||||||| ||||   c
                             uggcguag  cuuguggaa ucgc   a
guaaucauucuaggcgcuccucauggggc        ua         g    agu 

>bta-mir-220b (-39.70)   [bta-miR-220b:23-43]

----ga      -g   uu u  gg   CACC        --C        g    a g 
      cagggu  gcg  g ag  cuC    ACCGUGUC   GACACCUu ggcg g g
      ||||||  |||  | ||  |||    ||||||||   |||||||| |||| | c
      guucua  cgc  c uc  ggg    uggcguag   uuguggaa ucgc c a
guaguc      gg   uc -  au   --ac        uac        a    a u 

>bta-mir-220c-1 (-45.40)   [bta-miR-220c:23-44]

--gacaggguggcguuguagggcuCCACC        --         g    agg 
                             ACCGUGUC  GGACACCUU ggcg   g
                             ||||||||  ||||||||| ||||   c
                             uggcguag  cuuguggaa ucgc   a
guaaucauucuaggcgcuccucauggggc        ua         g    agu 

>bta-mir-1225 (-53.60)   [bta-miR-1225-3p:71-93]

g    ua    c      gggagagggacgcacccugggcccagc 
 uggg  cggc cagggg                           a
 ||||  |||| ||||||                           g
 ACCC  GCCG GUCCCC                           a
G    CC    U      GAGCCagucaggccgacgcgggacccg 

>bta-mir-584-8 (-30.10)   [bta-miR-584:18-36]

---ag  ug  ca             GCC   G    --   g    a 
     ga  gc  agcauucUGGUUU   UGG ACUG  AGu ccug g
     ||  ||  |||||||||||||   ||| ||||  ||| |||| g
     uu  ug  uuguaggauuaga   acc ugac  uca gggc u
cgucg  gu  --             ---   g    gu   -    a 

>bta-mir-29e (-28.64)   [bta-miR-29e:52-75]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauUUU UGACUAAAGU UACUAC GA Ucua      u
         G          U      -  -    uguuuc 

>bta-mir-1282 (-39.40)   [bta-miR-1282:9-28]

ccuucu   CG          UC       ----   g   g     cgag   c 
      ucU  UUUGCCUUUU  UGCUUcu    gcu cau aucuc    ucc u
      |||  ||||||||||  |||||||    ||| ||| |||||    |||  
      agg  aaacgggaga  auggagg    cgg gua uagag    ggg a
-----c   aa          cc       guca   g   g     --au   g 

>bta-mir-1284 (-24.59)   [bta-miR-1284:30-51]

--a   ug    ---         uuuaau    UCUGC      C U  C     uuaaauu 
   uuu  auau   auaaaccag      guuu     ACAGAC C GG UUUUC       u
   |||  ||||   |||||||||      ||||     |||||| | || |||||        
   aaa  uaua   uguuugguc      cagg     uguuug g cc aaagg       u
cua   gu    cuu         ---uuc    --uua      u c  c     uuauaua 

>bta-mir-376a (-25.80)   [bta-miR-376a:61-81]

aauccuuc         u    g  a    c    u      guac   au 
        uuugguauu aaaa gu gauu uccu cuauga    auu  u
        ||||||||| |||| || |||| |||| ||||||    |||   
        aaacuauga uuuU CA CUAA AGGA GAUACU    uag  u
---gucgu         c    G  C    A    -      -Aau   ca 

>bta-mir-1291 (-26.70)   [bta-miR-1291:1-24]

-----------------U    -   AC   A    U       c 
                  GGCC CUG  UGA GACC GCAGUua a
                  |||| |||  ||| |||| ||||||| c
                  ccgg gac  acu uugg cgucgau u
guccuucugucacgagac    a   aa   -    u       a 

>bta-mir-1179 (-28.80)   [bta-miR-1179:15-35]

----ggcca       a   --         C        Gu uaug 
         gaaggga gAA  GCAUUCUUU AUUGGUUG  g    u
         ||||||| |||  ||||||||| ||||||||  |     
         uuuuccu uuu  cguaggaga uaaccaac  u    u
cgaucaauc       a   ac         c        ug uccg 

>bta-mir-1301 (-40.80)   [bta-miR-1301:46-69]

--  gu    g gg       -     -c c      -  g 
  gg  ugug g  gucacuc uaggc  c gcagca cu u
  ||  |||| |  ||||||| |||||  | |||||| || g
  cc  acac C  UAGUGAG AUCCG  G CGUUgu gg c
cu  ug    a UU       G     UC A      a  u 

>bta-mir-220a (-50.90)   [bta-miR-220a:23-44]

----ga      -g   uugu   - c   A          -   -      g    a    
      cagggu  gcg    agg g uCC CGACCGUGUC UGA CACCUU ggug ggg 
      ||||||  |||    ||| | ||| |||||||||| ||| |||||| |||| || c
      guucua  cgc    ucc c agg gcuggcguag acu guggaa ucac cca 
guaguc      gg   ----   u a   g          u   u      g    a    

>bta-mir-7-2 (-45.20)   [bta-miR-7:23-46]

---    u  -      a  u        A     A       U      --     a 
   ugga gu uggucu gu cugugUGG AGACU GUGAUUU GUUGUU  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguauacc ucuga cacuaaa caacag  aaguc a
gac    c  u      -  c        g     -       -      cu     a 

>bta-mir-1256 (-14.60)   [bta-miR-1256:31-52]

a   a       cuuugaagcuuugaagucAGGCAUUGAC 
 guc gccugug                            U
 ||| |||||||                            U
 uag uggauac                            C
-   a       agauggauuccugaaauuaUAGAUCUCU 

>bta-mir-29b-1 (-34.02)   [bta-miR-29b:51-73]

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucUU UGACUAAAGU UACCAC  GAUcug     g
g         G          U      --      uuagu 

>bta-mir-1835 (-22.90)   [bta-miR-1835:1-22]

--U   C  --------U    G UG     G  c 
   GCA CC         GAGA C  GGGCU gu u
   ||| ||         |||| |  ||||| || c
   cgu gg         cucu g  uccgg ua c
ggc   c  ugucuaaau    g gu     g  u 

>bta-mir-1281 (-29.60)   [bta-miR-1281:33-49]

---a     cacc            gugu 
    ggggg    gggaggagguga    c
    |||||    ||||||||||||     
    cCCCU    UCCUCCUCCGCU    u
uucg     ---C            guuc 

>bta-mir-1251 (-22.00)   [bta-miR-1251:5-25]

-----  gg  U  A    CCA         --c  c 
     gu  AC CU GCUG   AAGGCGCUu   uc u
     ||  || || ||||   |||||||||   || u
     ca  ug ga cgac   uuucgcgag   ag c
cggua  ga  u  c    ucg         cca  u 

>bta-mir-1296 (-47.70)   [bta-miR-1296:15-36]

ccua    a           C CU        CU   u     a 
    ccua cugggUUAGGG C  GGCUCCAU  CCu uagga a
    |||| ||||||||||| |  ||||||||  ||| ||||| a
    gggu gauccaauccc g  ucggggug  ggg gucuu c
uguc    c           a uu        ag   u     c 

>bta-mir-1193 (-42.00)   [bta-miR-1193:64-84]

ccagccgcucucca    a    a g       -    c      g    cu  au 
              gggu gcug g ggauggu aggc ggugac ugca  uc  u
              |||| |||| | ||||||| |||| |||||| ||||  ||   
              ccca cgac c cCUAUCA UUUG CCACUG AUgu  ag  u
----gucuaccuga    -    - a       G    C      G    --  ca 

>bta-mir-1197 (-27.30)   [bta-miR-1197:56-76]

-----cuucc       -u     cgc   u       gug g    - uuu 
          ugguauu  gaaga   ggu gaccaug   u uacg c   a
          |||||||  |||||   ||| |||||||   | |||| |   u
          acuauag  cuUCU   UCA CUGGUAC   G AUgc g   u
ccgcuucuac       cu     ---   U       ACA G    a uau 

>bta-mir-7-1 (-44.20)   [bta-miR-7:21-44]

-    agca      c    c   A     A U     U       ucuc 
 gugg    gccagc ccau UGG AGACU G GAUUU GUUGUUg    c
 ||||    |||||| |||| ||| ||||| | ||||| |||||||    u
 cgcc    cggucg ggua gcc ucuga c cugaa caacaac    g
a    --ac      u    c   g     c -     -       ucgc 

>bta-mir-1839 (-23.30)   [bta-miR-1839:7-28]

--aaugaaAA         AAC        ugug a 
          GGUAGAUAG   AGGUCUUG    c a
          |||||||||   ||||||||    | a
          ccaucuauu   uccagaac    g a
guaacgacaa         -ca        uuaa u 

>bta-mir-1307 (-52.14)   [bta-miR-1307:80-101]

--     a   u    ---    ---  -a   --cc        c a   u       -a  u  a   gc   ucuaua 
  cauca gag cggc   ugag   uc  cug    acugccua c auc cgaccgg  cc cg ccg  ucg      u
  ||||| ||| ||||   ||||   ||  |||    |||||||| | ||| |||||||  || || |||  |||       
  guggu cuc guug   acuu   ag  gac    uggcggau g ugG GCUGGCU  GG GC GGC  Agc      u
ca     -   -    uga    uug  ca   auac        a a   U       GC  U  -   UC   uaaccg 

>bta-mir-1298 (-49.40)   [bta-miR-1298:18-39]

--aga        u         U    C             ------       cc 
     ugagaagu aagagUUCA UCGG UGUCCAGAUGUAu      ccaagua  c
     |||||||| ||||||||| |||| |||||||||||||      |||||||   
     gcuuuucg uuuucaagu aguc acgggucuacaua      gguuuau  u
cucag        u         u    a             aauaac       ag 

>bta-mir-1287 (-27.10)   [bta-miR-1287:17-38]

--------     ----   --u   cagg       UCA       ---   UC 
        gcucu    gcu   ucc    UGCUGGA   GUGGUUU   GAG  u
        |||||    |||   |||    |||||||   |||||||   |||  g
        cgagg    uga   agg    acgaucu   caccgaa   cuc  a
aacaguau     uuag   cgc   --ca       ---       aau   cg 

>bta-mir-1248-1 (-38.80)   [bta-miR-1248:4-30]

--------uuuAC        A   GC   G     ---AA               a 
             CUUCUUGU UAA  ACU UGCUA     auuacagaaaccaag u
             |||||||| |||  ||| |||||     ||||||||||||||| a
             gaagaaca auu  uga acgau     uaauguuuuugguuc g
acgucaaggagaa        c   -a   g     cguaa               c 

>bta-mir-1185 (-35.80)   [bta-miR-1185:15-35]

u       u    -     GA A              a  uua 
 uugguac ugaa gAGAG  U CCCUUUGUAUGUUc cu   u
 ||||||| |||| |||||  | |||||||||||||| ||    
 aacuaug guuu uucuc  a gggagacauauaag gg   u
a       c    a     ag -              c  uaa 

>bta-mir-1306 (-23.70)   [bta-miR-1306:1-21]

C    U  CCU  A        guga   a 
 CACC CC   GC AACGUCCa    ugc g
 |||| ||   || ||||||||    |||  
 gugg gg   cg uugcaggu    aug a
-    u  ucu  g        ---a   g 

>bta-mir-1271 (-46.30)   [bta-miR-1271:15-36]

-ca  -   au             C     A          ua 
   cc cag  cagugCUUGGCAC UAGUA GUACUCAgua  u
   || |||  ||||||||||||| ||||| ||||||||||   
   gg guc  guuacggaccgug aucgu cgugaguugu  a
ucg  a   gu             u     c          uc 

>bta-mir-1249 (-32.70)   [bta-miR-1249:41-62]

---g         a  a  u    cac     cuc 
    ggaggaggg gg ga gggc   guucc   u
    ||||||||| || || ||||   |||||    
    CUUCUUCCC CC CU CCCG   CAagg   g
uccA         -  C  U    ---     ucc 

>bta-mir-1248-2 (-38.80)   [bta-miR-1248:4-30]

--------uauAC        A   GC   G     ---AA               a 
             CUUCUUGU UAA  ACU UGCUA     auuacagaaaccaag u
             |||||||| |||  ||| |||||     ||||||||||||||| a
             gaagaaca auu  uga acgau     uaauguuuuugguuc g
acgucaaggagaa        c   -a   g     cguaa               c 

>bta-mir-181a-1 (-32.80)   [bta-miR-181a:24-47]

---u   cucc a     -  uc  u A   U      CU       A    g  auu 
    gag    g gguug cu  ag g ACA UCAACG  GUCGGUG GUUu ga   a
    |||    | ||||| ||  || | ||| ||||||  ||||||| |||| ||    
    cuc    c ccaac gg  uc c ugu aguugc  cagcuac caaa cu   a
ccac   -uac a     c  ua  c a   u      --       -    a  aaa 

>bta-mir-181b-1 (-37.10)   [bta-miR-181b:36-59]

cuugggcagagguucuuucuuaaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUU   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     gugaguaac   agucacucga   gg g
-------------------uacgcc       -caac         --a          aca  u 

>hsa-mir-2052 (-10.69)   [hsa-miR-2052:2-21]

c          A -A     GUcccuu 
 UGUUUUGAUA C  GUAAU       u
 |||||||||| |  |||||        
 acaaaacuau g  cauug       a
a          c ac     aaacuug 

>hsa-mir-2053 (-29.40)   [hsa-miR-2053:61-83]

     c         c  a               -caacc   ga 
cuugc auguaaaua ag uuuaauuaacauuug      ugu  a
||||| ||||||||| || |||||||||||||||      |||   
gaacg uaCAUUUAU UC AAAUUAAUUGUGaau      acg  g
     a         C  C               uucaaa   ua 

>hsa-mir-2054 (-8.20)   [hsa-miR-2054:1-23]

          -AA      UUAUU 
CUGUAAUAUA   UUUAAU     c
||||||||||   ||||||      
gacauuaugu   aaauua     u
          aaa      cuauc 

>osa-MIR2055 (-39.30)   [osa-miR2055:74-94]

      u    g    ag          cacagacauugacacgcaauu 
agaaga ggag cacc  cccaaggaaa                     c
|||||| |||| ||||  ||||||||||                     a
ucuucu CUUU GUGG  GGGUUCCUUU                     a
      -    G    AA          uucauccugcguuagaagagg 

>osa-MIR827a (-51.10)   [osa-miR827a:97-117]

-u       c               c     aug  u    -auug   aauaauuga    gc 
  uuuguug uggucaucuagcuac cgugc   cc ggag     gag         cgau  a
  ||||||| ||||||||||||||| |||||   || ||||     |||         ||||   
  AAACGAC ACCAGUAGAUUggug gcacg   gg ucuc     uuc         gcug  g
AC       U               c     ---  u    gguua   --------g    ac 

>bfl-mir-2056 (-40.30)   [bfl-miR-2056:55-76]

acagacgacu     u      u               g  aca 
          ugggc caggua gucugcggugaggcu gu   a
          ||||| |||||| ||||||||||||||| ||    
          acucG GUCCAU UAGAUGUCACUUUgg cg   c
--------gc     C      C               a  gcu 

>bfl-mir-2057 (-41.00)   [bfl-miR-2057:7-29]

-----------c     U             A        cug  a 
            acggg GAGAAGUUAGCCA CCAUCCGG   gu u
            ||||| ||||||||||||| ||||||||   ||  
            ugcuc uucuucaguuggu ggugggcc   cg g
auaacucugcau     u             -        caa  u 

>bfl-mir-2058 (-40.40)   [bfl-miR-2058:7-30]

-------------  g   U             A        U   u 
             gc aag GAGAAGUAAGACU CCAUCCCG gug g
             || ||| ||||||||||||| |||||||| ||| c
             cg uuc uucuucguucugg gguggggc cau u
cacaacauuuggg  a   u             -        -   g 

>bfl-mir-2059 (-32.80)   [bfl-miR-2059:57-77]

cauuuguguuggacc              uu c          u  a 
               ccuuucaaggcaaa  g ugcaauacuu gu u
               ||||||||||||||  | |||||||||| || c
               ggaaAGUUUCGUUU  U ACGUUAUgaa cg c
--------------u              UU C          -  u 

>bfl-mir-2060 (-26.12)   [bfl-miR-2060:53-75]

-      uucagaacaaa        g   u      g   g  ug 
 auagug           ggacaugu ugu cccugu ugu ga  g
 ||||||           |||||||| ||| |||||| ||| ||   
 ugucac           UUUGUGUA ACA GGGACG ACG cu  u
g      ---------CA        G   -      -   a  ug 

>bfl-mir-2061 (-34.60)   [bfl-miR-2061:55-76]

cccugguggu       -  g           gc      c   aa 
          uuuccac gg caauguaucua  gcaaca guu  c
          ||||||| || |||||||||||  |||||| |||   
          gagggUG CU GUUACAUGGAU  CGUUgu cga  c
---------c       A  G           -A      -   gc 

>bfl-mir-2062 (-33.02)   [bfl-miR-2062:8-29]

-----------   g  c      A               ugaac 
           ccu cu UGCAAC AUAUUUCAUCAGUGG     u
           ||| || |||||| |||||||||||||||     c
           gga ga gcguug uguaaaguggucauc     c
ugucaccggcc   g  u      a               uaaaa 

>bfl-mir-2063 (-29.60)   [bfl-miR-2063:56-77]

aggcu           a     -a   u        ggua    ac 
     cacuuucaaaa gcaaa  agu gcaauauc    uacg  g
     ||||||||||| |||||  ||| ||||||||    ||||   
     gugaaAGUUUU CGUUU  UCA CGUUAUag    augc  u
-----           -     AA   -        ----    au 

>bfl-mir-2064 (-29.20)   [bfl-miR-2064:56-77]

cauucagccaccuu   --           u      gu      agc 
              guc  cacgguugcau guguug  cuuugu   g
              |||  ||||||||||| ||||||  ||||||   u
              uag  GUGUCAACGUG CACGAC  GAAaca   g
-------------g   aU           U      --      agu 

>bfl-mir-2013 (-34.60)   [bfl-miR-2013:55-77]

uuugc      -           -  u    c   ucugu    u 
     cccuga gccauugcauu ug cugc uug     gcau g
     |||||| ||||||||||| || |||| |||     ||||  
     gggACU UGGUAACGUGA AC GACG aac     ugua a
---cu      G           U  -    A   ----c    g 

>bfl-mir-135a-1 (-31.60)   [bfl-miR-135a:7-28]

-------------  g    A           CU          uau 
             gu uucU UGGCUUUCAUC  AUGUGAAugu   c
             || |||| |||||||||||  ||||||||||    
             ca aaga acugaaggugg  uacacuugua   g
ucaaaggugugug  g    a           -u          cac 

>bfl-mir-135a-2 (-31.60)   [bfl-miR-135a:7-28]

-------------  g    A           CU          uau 
             gu uucU UGGCUUUCAUC  AUGUGAAugu   c
             || |||| |||||||||||  ||||||||||    
             ca aaga acugaaggugg  uacacuugua   g
ucaaaggugugug  g    a           -u          cac 

>bfl-mir-2065 (-18.40)   [bfl-miR-2065:7-27]

--------------cuuaccUGGCAGAGA   C    U  U   gaa 
                             UGG ACGU GA cau   g
                             ||| |||| || |||   g
                             acc ugca cu gua   a
ccuugucuugcgaacaauucugucugcga   u    -  c   gga 

>bfl-mir-2066 (-46.00)   [bfl-miR-2066:56-77]

uggugccagcgcc   g  ug     uc       c    -  aau 
             ccu ac  cugca  cugcugc uugg gg   a
             ||| ||  |||||  ||||||| |||| ||    
             ggA UG  GACGU  GACGACG AAcc cc   u
----------gug   G  GU     GU       -    a  aac 

>bfl-mir-2067 (-25.64)   [bfl-miR-2067:57-77]

cccucauccaug     a         c       c    gaaccu 
            uuuca cuguugcau uugcugc uuua      u
            ||||| ||||||||| ||||||| ||||       
            aaaGU GGUAACGUA GACGACG AAau      c
----------ca     -         U       -    accuac 

>bfl-mir-2068 (-36.10)   [bfl-miR-2068:7-28]

--------------- u   uC             C       g aa 
               g ucu  UUCCUAUGCACAU UGUCCUU u  g
               | |||  ||||||||||||| ||||||| |  c
               c aga  agggauacgugug acaggag a  u
gucuaaaccgaucga u   ga             u       g gg 

>bfl-mir-2069 (-34.20)   [bfl-miR-2069:56-76]

cccccgugaaaucuaaccugcgucugaaug             --c    guc 
                              aguccgcggcugc   ugcc   c
                              |||||||||||||   ||||    
                              UCAGGUGCCGACG   GCGG   g
------------------------gcauag             CCA    Aga 

>bfl-mir-2070 (-30.60)   [bfl-miR-2070:7-28]

-------------c   ugU         CUCUA        ggca  u 
              ggg   UUCCACAGC     CACAUGUg    ug c
              |||   |||||||||     ||||||||    ||  
              ccc   agggugucg     guguacgc    ac c
auugccacaugucu   --u         auuac        ---g  a 

>bfl-mir-2071 (-34.60)   [bfl-miR-2071:54-76]

uccgcag  ug -aua            g      ccgucc    g 
       gu  a    ugcggugcggug uagcaa      cgac u
       ||  |    |||||||||||| ||||||      |||| a
       ca  u    ACGCCGCGCCAC AUUGUU      gcug a
-------  gu GAAA            -      -----A    a 

>bfl-mir-2072 (-31.10)   [bfl-miR-2072:7-28]

----------------     c   A     A     AC     a  c 
                ucuug UGC ACAUC CAGUG  CACAU gg c
                ||||| ||| ||||| |||||  ||||| ||  
                agaau aug uguag gucac  gugua cu a
cacaccguaccggucu     u   g     c     ga     a  g 

>bfl-mir-2073 (-28.20)   [bfl-miR-2073:7-25]

uugu        G   C  C    C    u    --u  aaaa 
    uaGCCUGG UGC AU CUCC uggu agcu   gc    a
    |||||||| ||| || |||| |||| ||||   ||    g
    aucggacc aug ua gagg auca uugg   cg    a
----        a   c  a    u    -    cac  aguu 

>bfl-mir-34b (-30.74)   [bfl-miR-34b:54-75]

uauugu   cuacaga           c    u     -  gac 
      gcg       ggcagugaugu aguu guugu gu   a
      |||       ||||||||||| |||| ||||| ||    
      cgc       CCGUCACUACA UCAA CAAca ca   c
------   aaagGAA           A    -     g  gag 

>bfl-mir-2075 (-32.10)   [bfl-miR-2075:4-26]

uug         ----ACC    -  -A      uga      ----   -    c 
   AUCUCGUCA       UUCG UC  GAUGuc   uacacu    gcu cuga u
   |||||||||       |||| ||  ||||||   ||||||    ||| ||||  
   uagggcggu       aagu ag  cugcag   guguga    cga ggcu u
--g         gaaaaca    g  ga      -ua      agag   a    u 

>bfl-mir-2076 (-33.50)   [bfl-miR-2076:7-28]

---------------  gu           AG         U  auu 
               ug  agAAUUGCACU  AGUGAUUUG Ug   u
               ||  |||||||||||  ||||||||| ||   u
               ac  ucuugacguga  ucacuaaac ac   u
cugaacauguucggc  uc           cu         u  agg 

>bfl-let-7-1 (-29.70)   [bfl-let-7:7-28]

----- ug   U       UA           U  gaagua  a 
     c  agg GAGGUAG  GGUUGUAUAGU ca      ca c
     |  ||| |||||||  ||||||||||| ||      ||  
     g  uuu uuccauu  ccaacauguca gu      gu a
uacug gu   u       gc           -  --agag  u 

>bfl-let-7-1-as (-16.77)   [bfl-let-7-1-as:57-78]

guaugacccaaaaaa     ac        c   -  ucuccaau 
               aggua  ggguugua agu ca        g
               |||||  |||||||| ||| ||         
               UCCAU  UCCAACAU UCA gu        u
---------cuccAC     CA        A   A  cuucaugu 

>bfl-mir-125b-as (-36.20)   [bfl-miR-125b-as:55-76]

guggagggcguauguca    gc    -a          c     --g c 
                 ccca  uccc  agauccuaac uguga   c a
                 ||||  ||||  |||||||||| |||||   |  
                 gggu  AGGG  UCUGGGAUUG ACACU   g u
----------------g    -a    AC          A     aca g 

>bfl-mir-129 (-32.10)   [bfl-miR-129:21-43] [bfl-miR-129*:59-77]

cucuccccggcgugcc            U   UU         gaga  a 
                cuguCCUUUUUG GGU  GGGGCUUUU    ug u
                |||||||||||| |||  |||||||||    ||  
                gauagGGAAAAC CCA  UCCCGAAaa    ac g
----------------            U   -U         ---g  a 

>bfl-mir-9-1 (-31.60)   [bfl-miR-9-5p:7-28] [bfl-miR-9-3p:45-66]

------------g      C               G    a a u u 
             uguugU UUUGGUUAUCUAGCU UAUG g g c u
             |||||| ||||||||||||||| |||| | | |  
             acaACA AAACCAAUGGAUCGA AUAc c c g u
aucccccuuacca      -               A    - a u u 

>bfl-mir-9-2 (-31.40)   [bfl-miR-9-5p:6-27] [bfl-miR-9-3p:44-65]

--------------      C               G    a a u u 
              uguugU UUUGGUUAUCUAGCU UAUG g g c u
              |||||| ||||||||||||||| |||| | | |  
              acaACA AAACCAAUGGAUCGA AUAc c c g u
gaucccccuuacca      -               A    - a u u 

>bfl-mir-92a-2 (-32.20)   [bfl-miR-92a:57-78]

agaacauugcccuga           u        g       -  ac 
               caagaaggucg gauaggug caauguu gu  c
               ||||||||||| |||||||| ||||||| ||   
               guuUUUCCGGC CUGUUCAC GUUAUaa ca  c
--------------c           C        -       a  ca 

>bfl-mir-92a-3 (-32.20)   [bfl-miR-92a:57-78]

agaacauugcccuga           u        g       -  ac 
               caagaaggucg gauaggug caauguu gu  c
               ||||||||||| |||||||| ||||||| ||   
               guuUUUCCGGC CUGUUCAC GUUAUaa ca  c
--------------c           C        -       a  ca 

>bfl-mir-92c (-65.61)   [bfl-miR-92c:101-122]

------------uag     a   a  ----    uuu        -----        -uaaaauuua     uuuguuuuu      a         g   aaa       uc 
               agggc ggg gg    gaau   gaagugau     uguguuug          gcggu         ggcggg aggucggga aag   caauguu  c
               ||||| ||| ||    ||||   ||||||||     ||||||||          |||||         |||||| ||||||||| |||   |||||||  a
               ucuug ccc cc    uuua   cuucacug     guacagac          cgccg         ucgucC UUCGGCCCU UUC   GUUAUag  a
cucuucuuugugacg     -   a  gaau    uuu        uuuca        cucguucuac     ---------      G         G   -AC       cc 

>bfl-mir-33-1 (-39.00)   [bfl-miR-33:7-28]

-------------g     G        A            g g a 
              cugag UGCAUUGU GUUGCAUUGCAU u c c
              ||||| |||||||| |||||||||||| | | a
              gacuc acgugacg caauguaacgug a g a
guaacguugguaca     g        a            a g a 

>bfl-mir-19 (-17.60)   [bfl-miR-19*:56-77]

uucacgcaccgcagucaaa   u     c  aa    aa    --c    u 
                   gcu cuuug ga  ugaa  ugca   ucac c
                   ||| ||||| ||  ||||  ||||   ||||  
                   cga gAGAC CU  GUUU  ACGU   Ggug a
------------------c   -     -  AC    GG    UUU    a 

>bfl-mir-219 (-29.10)   [bfl-miR-219:8-28]

----------c    -      U     AA    A      -  gac 
           cagu gcUGAU GUCCA  CGCA UUCUug uu   c
           |||| |||||| |||||  |||| |||||| ||    
           guua cgacua caggu  gcgu aagaac aa   u
cauccgucgca    a      -     -c    c      c  guu 

>bfl-mir-705 (-26.00)   [bfl-miR-705:7-26]

-------gca    --GU      -     --U    Cccga   c 
          ugaG    GGGAGG UGGGG   GGUU     agu u
          ||||    |||||| |||||   ||||     |||  
          acuc    cccucu acucc   ccga     ucg g
cuggaacaag    auuc      g     uau    uacag   a 

>ppt-MIR2077 (-71.90)   [ppt-miR2077:83-103]

uucgacgcugcuaucu              a                         a   u 
                ugaauggaaauaug cguguuuaugagcuuaguggcuggu guu c
                |||||||||||||| ||||||||||||||||||||||||| |||  
                acuuaCCUUUAUAC GCACAAAUACUcgaaucaccgacca caa c
agucaacucuaguugg              C                         a   a 

>ppt-MIR2078 (-90.90)   [ppt-miR2078:115-135]

ggaggauuacugauauauucuagcacggcaagagagg    -a  c                              gggga   a  c      u 
                                     uggc  ag cucauguacaggcacaggcaagccaacccu     uca cu guucag u
                                     ||||  || ||||||||||||||||||||||||||||||     ||| || |||||| g
                                     gccg  uc gaguacaUGUCCGUGUCCGUUCGGUUGGga     agu ga cgaguc a
------------gcucagcuagggaucccaaauuaga    ag  a                              ----g   c  u      a 

>ppt-MIR2079 (-66.80)   [ppt-miR2079:81-101]

auauaa     a  ua  ----                                         g 
      guacu au  au    uuaugcgucaucaacaucaacucuucauaguuauuauauaa u
      ||||| ||  ||    |||||||||||||||||||||||||||||||||||||||||  
      uauga ua  ua    aauACGCAGUAGUUGUAGUUGAGAaguaucaauaauauauu a
---uag     a  gc  caaa                                         c 

>ppt-MIR2080 (-82.11)   [ppt-miR2080:26-46]

-------g         uguuaag g                                         uuu 
        cugcguguu       u agaaauUCCAUAUCAAUUCGCAGAUGCcgcuucagaacugg   u
        |||||||||       | |||||||||||||||||||||||||||||||||||||||||   a
        gaugugcag       g ucuuuaagguauaguuaagcgucuacggcgaagucuugacc   c
cgauuugg         ------- g                                         uug 

>ppt-MIR2084 (-58.00)   [ppt-miR2084:33-53]

caguuacaagu    u    u    g           A   U          A    aac 
           aucu gaaa ucgu gaagcgCCUGC UUG UGGAUUGUGG cuac   g
           |||| |||| |||| ||||||||||| ||| |||||||||| ||||   g
           uaga cuuu agca cuucgcggacg agc accuaacacc gaug   a
--------uuu    -    c    a           a   u          c    agg 

>ppt-MIR2085 (-60.60)   [ppt-miR2085:65-85]

--------aaa    -    g    u           uuc a               ucc 
           aucu gaaa ucgu gaagcgccugc   g uggauugugggcuac   u
           |||| |||| |||| |||||||||||   | |||||||||||||||   c
           uaga cuuu agca cuuCGCGGACG   C ACCUAACAccugaug   c
gucaauguuca    a    a    c           UAA A               uug 

>ppt-MIR2081 (-72.70)   [ppt-miR2081:82-102]

----guuu   cagua   cagu                                  g    ag 
        gcc     cuc    gaucagacacauaacucuagcuauugggcagaca uguu  a
        |||     |||    |||||||||||||||||||||||||||||||||| ||||   
        ugg     gag    uUAGUCUGUGUAUUGAGAUCGAuaacccgucugu acag  g
aauuucug   ---ac   -aau                                  g    au 

>ppt-MIR2082 (-69.20)   [ppt-miR2082:27-47]

-------     cca     ug   cu            UU             cg      a  uc  c 
       cucgu   caucu  ccg  ccagauUGUGUG  CCGCUUCUUCUUU  ucaugc ug  cu c
       |||||   |||||  |||  ||||||||||||  |||||||||||||  |||||| ||  ||  
       gagua   guaga  ggc  ggucuaacgcau  ggcgaagaagaag  aguacg ac  ga a
gagucuu     --c     --   ag            uc             au      a  ua  c 

>ppt-MIR2083 (-109.51)   [ppt-miR2083-5p:77-97] [ppt-miR2083-3p:277-297]

aaaaguguguguaugcggaaguuggagaaaacccagacuucauugcucgaugaagcauguagcuucgcagucgua            C  C          u uc   cgcauugugguucuccaacaccugcacagcggcggucuuguccggauuagggaucgucuacaccagauaagccacg 
                                                                           cUUCUUGCACUC UC AUCUCUcgca c  uug                                                                            g
                                                                           |||||||||||| || |||||||||| |  |||                                                                            c
                                                                           GAAGAACGUGAG AG UAGAgagugu g  gac                                                                            g
--------------------------------------------------acgcagaccuuguaccuuucucccA            C  U          c uu   ccgucccaacauaggcuugcaccuuuugcgucguuggcaacaacuugguuuccuaccauaaaaagaggcucuuuuu 

>ppt-MIR1023e (-44.70)   [ppt-miR1023e-5p:21-41] [ppt-miR1023e-3p:80-100]

---ac     u aau     c  A      CU   U           aucguu     ccuc 
     agcuu g   gucau au CACUCU  CCG UUCCCUUCcga      uuucc    a
     ||||| |   ||||| || ||||||  ||| |||||||||||      |||||    u
     ucgaa c   uagua UA GUGAGG  GGC AAGGGAagguu      aaagg    g
cagcc     - guc     c  C      UG   U           ---guc     ucac 

>mtr-MIR2086 (-61.90)   [mtr-miR2086*:13-33] [mtr-miR2086:70-90]

--uuc    a                         c  ca      c   a 
     acca cuuuCCAGUUCUGCGUUCAUGUCCC ug  gcuuga uuu g
     |||| ||||||||||||||||||||||||| ||  |||||| |||  
     uggu gaAAGGUCAAGACGUAAGUACAGgg ac  cgagcu aag g
gaguc    a                         a  aa      a   g 

>mtr-MIR1510b (-93.00)   [mtr-miR1510b*:74-94] [mtr-miR1510b:135-155]

   uc   uu      --   -   --   c  -       ------uug   cu    uu           c c      c  c   U    C  U        G    c  c     c      
aca  uag  agucau  acc gau  agg ga gagagau         cua  gcaa  guuguuuuacc g uccucc au CCA GGAU CC ACCAUGUG acuc au aucau agauc 
|||  |||  ||||||  ||| |||  ||| || |||||||         |||  ||||  ||||||||||| | |||||| || ||| |||| || |||||||| |||| || ||||| |||| c
ugu  guc  uuagua  ugg cua  ucc cu cucuuua         gau  cguu  caacaaaaugg c aggagg uA GGU CCUA GG UGGUACAc ugag ua uagug ucuaa 
   cu   -u      uu   a   cu   a  a       cuuaguaaa   uu    uu           a u      -  A   C    U  C        -    a  a     u      

>mtr-MIR1507 (-51.30)   [mtr-miR1507*:32-53] [mtr-miR1507:94-115]

    uaa  uccaa      ug      ag    -GU            AA  U     uuucuu       uc 
acca   ac     uuaaug  guguug  uAGA   UGUAUGGAACGA  GA gggaa      guugaau  u
||||   ||     ||||||  ||||||  ||||   ||||||||||||  || |||||      |||||||  a
uggu   ug     aauugu  cauaac  AUCU   ACAUACCUUGCU  cu cccuu      uaacuua  u
    uuc  uuaac      gu      cG    ACU            CC  -     -----u       cu 

>mtr-MIR1510a (-58.30)   [mtr-miR1510a*:20-40] [mtr-miR1510a:128-148]

     ug   u      u     C     CAU      C    cauaaa        a  u    c  c      u    cca 
aaagu  cua ugcaau gUUGU UUACC   UCCUCC Aucc      ucuauuau ug acuc au aucaua ggau   c
|||||  ||| |||||| ||||| |||||   |||||| ||||      |||||||| || |||| || |||||| ||||    
uuucg  gau acguua CAACA AAUGG   AGGAGG uagg      ggauagua gc ugag ua uaguau ucug   u
     --   u      u     A     AUU      C    uucuaa        c  -    a  a      -    uuc 

>mtr-MIR1509 (-84.55)   [mtr-miR1509:79-99] [mtr-miR1509*:150-170]

     -   cu --ucuu         cu    a    uuu     cu   -uc  ----guuuucuuu   u   u c             U      AUA            uuuuucuuuuuauugu 
cccgg ccu  c      gccucauag  aguu gggu   cguug  guc   gu             uga cca u aauuuuuUUAAUC AGGAAA   CGGUGgagaggg                u
||||| |||  |      |||||||||  |||| ||||   |||||  |||   ||             ||| ||| | ||||||||||||| ||||||   ||||||||||||                u
ggguc gga  g      cggaguauu  ucga ccua   guaac  uag   cg             acu ggu a uuaaaGAAAUUAG UCCUUU   GCCAucucuucu                g
     u   au uuuuuc         ac    c    ugu     ag   uau  auuuuuuauuauu   u   c u             U      -AG            gcucucuauaguuaga 

>mtr-MIR2087 (-159.16)   [mtr-miR2087:87-107] [mtr-miR2087*:162-182]

   ugau     c    c                a   a               a             a      a   u             AG                       agugu    uuuuuu 
gcu    gaaaa ugcu uugacacauaugauag gcu aaaaacauauguaaa gacgaaaaugccc uguagc guu acuaccGAAGUAA  AACCGGCUGCAGuuaacugcuga     gaag      u
|||    ||||| |||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||| |||||| ||| |||||||||||||  |||||||||||||||||||||||     ||||      u
cga    cuuuu acga aacuguguauacuauc cga uuuuuguguacauuu cugcuuuuacggg acguug caa ugauggCUUCAUU  UUGGCUGACGUCaauugacggcu     uuuc      u
   ---u     a    c                c   c               a             g      c   u             CU                       -gcuu    uuuuuu 

>mtr-MIR2088a (-64.20)   [mtr-miR2088a:39-58] [mtr-miR2088a*:93-112]

     gua  uc   guagac  c        c                         aaaac   cca    ug 
ucucu   uc  gaa      gg ggcuuaac gauguAGGCCUAGAUUACAUUGGAC     agu   aacu  a
|||||   ||  |||      || |||||||| |||||||||||||||||||||||||     |||   ||||   
agaga   ag  cuu      uc cugaauug cuacAUCUGGAUCUAAUGUAACCUg     uca   uugg  g
     --a  -u   augaaa  u        u                         guucu   ---    ua 

>mtr-MIR2089 (-54.99)   [mtr-miR2089:41-62] [mtr-miR2089*:104-125]

        ccaagcauucaaga     a     au  a           C         C  ug    ug u    agau 
gcaggcaa              ucuag gcaag  uu uuUUACCUAUU CACCAAUUC AU  aucc  g uuca    c
||||||||              ||||| |||||  || ||||||||||| ||||||||| ||  ||||  | ||||    u
cguuuguu              agauc cguuc  aa AAAAUGGAUAA GUGGUUAGG ua  uagg  c aagu    g
        uauauauaaaacga     a     ac  c           U         A  ug    gu u    gaaa 

>osa-MIR1846e (-48.40)   [osa-miR1846e:10-29]

-  c   c   AA             AC     g 
 cg auc gcC  CGAGGAGGCCGGG  CAccg a
 || ||| |||  |||||||||||||  |||||  
 gc uag cgg  gcuccuccggccu  guggc u
g  c   a   cc             ca     c 

>osa-MIR1428f (-52.80)   [osa-miR1428f-5p:10-31]

-u               A   CC            u aa  a      -cgau a 
  gcuuugcgAAUUCAC GGC  UAUCUUGUGgua g  cu aguacg     g u
  ||||||||||||||| |||  |||||||||||| |  || ||||||     |  
  cgaaaugcuuaagug ccg  auagaauaccau c  gg uuaugc     c u
ug               -   ua            u gg  g      auggu u 

>osa-MIR1428g (-50.80)   [osa-miR1428g-5p:10-31]

-                  G CC      G     u aa  g    --   g     
 cgcuuugcgAAUUCACAG C  UAUCUU UGgua g  cu agua  cgc auga 
 |||||||||||||||||| |  |||||| ||||| |  || ||||  ||| ||| u
 gcgaaacguuuaaguguc g  auagaa accau c  gg uuau  gcg uauu 
c                  - ua      a     u gg  g    ac   g     

>osa-MIR2090 (-33.44)   [osa-miR2090:7-28]

auuauuAAC         A                 c -agg   agaacg 
         UCUGAUUCU GAAUUUUUGcguuaaag g    acg      a
         ||||||||| ||||||||||||||||| |    |||       
         aggcuaaga cuuaaaaacgcaauuuc c    ugu      a
ccuauuccu         c                 a agaa   cacaaa 

>osa-MIR2091 (-50.40)   [osa-miR2091-5p:5-25] [osa-miR2091-3p:55-76]

-ga    AA       GAGG       c   cg    gu    gu 
   gcUC  CCGAGCC    AGGAGGc aug  ugcg  ggcu  g
   ||||  |||||||    ||||||| |||  ||||  ||||   
   cgag  gGUUCGG    UCCUCCG UAC  ACgu  ccga  g
cga    gc       ---A       U   AU    --    ga 

>osa-MIR2092 (-24.93)   [osa-miR2092-5p:10-30] [osa-miR2092-3p:79-100]

uug     --    CU   -  C     U    ccc    ga     cacuacu 
   aucuc  cCAA  GAA GU GGUGU UACU   acaa  ugaua       a
   |||||  ||||  ||| || ||||| ||||   ||||  |||||       g
   uGGAG  GGUU  CUU CG CCAca auga   uguu  acuau       u
-ug     AC    AC   A  A     c    ---    -a     ucccacc 

>osa-MIR2093 (-28.80)   [osa-miR2093-5p:10-29] [osa-miR2093-3p:29-48]

a  -   ugu                 A 
 cu gga   GUGCAUUAAUUGGAAGA C
 || |||   ||||||||||||||||| A
 ga ccu   UACGUAAUUAACCUUCU C
a  u   ucu                 A 

>osa-MIR2094 (-25.40)   [osa-miR2094-5p:13-33] [osa-miR2094-3p:42-63]

----   gga  agu    C     -     C  G   c 
    ucg   ga   gUGG UGCUA GGCUC UG GUG a
    |||   ||   |||| ||||| ||||| || |||  
    agc   CU   CACC ACGGU UCGAG AC cac a
cggu   gaG  --G    U     G     -  a   c 

>osa-MIR2095 (-15.50)   [osa-miR2095-5p:7-28] [osa-miR2095-3p:58-77]

-    aaCUG   AUU   CG      A        uagau  a 
 guga     AUA   UUA  AUGAAU Gaagguua     gu g
 ||||     |||   |||  |||||| ||||||||     ||  
 cacu     UAU   AAU  UAUUUA CUUCuaau     ca u
a    cauaa   --G   AG      C        uuaau  g 

>osa-MIR2096 (-150.00)   [osa-miR2096-5p:11-31] [osa-miR2096-3p:209-229]

--      gca              C                    g  gccg           a      gcgagaauucacugaaauuaccgcgccaucuuaucuccgcaaguugaagaa 
  gacgcc   cUGCCGAUUUCCCC UCGGGCGagccaucggagcg gg    uuggcucccaa gcagac                                                   u
  ||||||   |||||||||||||| |||||||||||||||||||| ||    ||||||||||| ||||||                                                    
  uugcgg   GGCGGCUAAAGGGG AGUCCgcucgguagcuuugc cc    aaccgaggguu cgucug                                                   a
gu      -AG              -                    g  ----           -      uauacaucaucaucuguguacuuaagugauuuuuaaugacgcgggcuuaau 

>osa-MIR2097 (-43.80)   [osa-miR2097-5p:8-29] [osa-miR2097-3p:146-167]

-guggg         G    G C     AG    uaga  gauagag       a   g ---g   -ag gg u g  uu    g     cg 
      gaAGAGAUG GACG G AGGGA  gaag    ug       uuugggg uag a    gga   g  a a au  gguu uuuuu  g
      ||||||||| |||| | |||||  ||||    ||       ||||||| ||| |    |||   |  | | ||  |||| |||||   
      uuucUUUAC CUGU C UUCUU  CUUu    ac       gaauccc guc u    uuu   c  u u ug  ccaa aaaaa  a
cgaaaa         G    G -     CU    uaag  -----ga       c   g gaca   gua uu u g  uu    a     aa 

>osa-MIR2098 (-20.20)   [osa-miR2098-5p:15-34] [osa-miR2098-3p:43-62]

-cagucuu    c     C  GGA     -   A     
        gugc auUCC GU   GGCAG CCG UGag 
        |||| ||||| ||   ||||| ||| ||| g
        caCG UGAGG CG   CUGUU GGC auua 
guaaucuu    -     -  -AA     U   a     

>osa-MIR2099 (-21.80)   [osa-miR2099-5p:9-30] [osa-miR2099-3p:31-50]

--        U     -   UUG    A    U 
  cugcuuug GAAUA UGU   UACA GCUU A
  |||||||| ||||| |||   |||| ||||  
  gacgagac CUUAU GCG   AUGU CGAA C
uu        -     U   ---    -    A 

>osa-MIR2100 (-50.60)   [osa-miR2100-5p:6-27] [osa-miR2100-3p:122-143]

u    -     U  AG     -     A  caa     caaacaagccguaggguggguggggaagaucggaagaagc 
 uccc UUCUC CA  UUGCC AAACA Gc   guugc                                        g
 |||| ||||| ||  ||||| ||||| ||   |||||                                        g
 aggg gaggG GU  GGCGG UUUGU CG   CAAug                                        c
a    u     -  GA     A     -  --C     ucuuucucuagccauuuuucuuuuuuuuaucgcuagcuca 

>osa-MIR2101 (-29.10)   [osa-miR2101-5p:10-31] [osa-miR2101-3p:76-97]

-ucuua  u    -       --A       A   ggag     gguauacaaccc 
      uc cACA UGUUUAC   AGUUAAA UGU    cagag            a
      || |||| |||||||   ||||||| |||    |||||             
      ag gUGU ACGAGUG   UCAAUUU gca    gucuc            a
uaccgg  c    U       AAC       A   ---a     acgguuugaaca 

>osa-MIR2102 (-43.70)   [osa-miR2102-5p:10-29] [osa-miR2102-3p:75-96]

   a  g  -    AA       ---   C     ccaccgcugccaugcggauga 
ccg ug ua GGGC  GCCGCCG   CCG CACca                     c
||| || || ||||  |||||||   ||| |||||                     a
ggc gc gu ccuG  CGGUGGC   GGC GUGGU                     a
   a  g  a    --       CUU   C     ACcuaggcuucucgaucuuca 

>osa-MIR396f (-70.20)   [osa-miR396f:8-29] [osa-miR396f-3p:145-168]

-      cUC    CA                g   ucgugugugcaugcuccucauauauuguucuagaucccaugcaugaugcau 
 gccaug   UCCA  GGCUUUCUUGAACUgu aac                                                   a
 ||||||   ||||  |||||||||||||||| |||                                                   u
 ugguac   AGGU  CUGAAAGAACUUGAUA uug                                                   c
g      aAA    UC                g   uucuaccccuaggucuacgcguagcuacuggauuaagucuagucuagcuag 

>osa-MIR2103 (-35.70)   [osa-miR2103:10-31]

cggc     -----        U   U   - ---G      g 
    gccuu     UUUCCCUC CCG GCG C    CUCGcc g
    |||||     |||||||| ||| ||| |    ||||||  
    cggag     agagggag ggc cgu g    gagcgg c
----     aacag        -   -   a guag      c 

>osa-MIR2104 (-65.30)   [osa-miR2104:74-95]

a  -          g g  u  ga        -    cc   ug     g   g 
 cg ggcgcucacg u gc uc  cccucguc ucgg  gcg  cggua ugc g
 || |||||||||| | || ||  |||||||| ||||  |||  ||||| ||| g
 gc ccgugaGUGC A CG AG  GGGAGCGG Ggcc  ugu  gccgu acg a
g  u          G G  U  --        C    -a   gu     -   g 

>osa-MIR2105 (-16.40)   [osa-miR2105:54-73]

-  ug    u    ug     -     a      ga uu u 
 uu  gauc guga  uauuu cauua gaauuu  g  g a
 ||  |||| ||||  ||||| ||||| ||||||  |  | u
 gg  uuag UACU  GUAAG GUAGU UUuaag  u  u u
a  gu    u    UA     U     G      ag uu u 

>osa-MIR2106 (-33.30)   [osa-miR2106:56-76]

---u   agaa      -   -          uac     --uga  u 
    gcg    ggaugu ucc gagaaucucg   gccgg     gg u
    |||    |||||| ||| ||||||||||   |||||     ||  
    cgc    cUUACA AGG CUUUUGGAGC   Cgguc     cc u
aagg   --aa      U   U          ---     uagug  c 

>osa-MIR827b (-62.10)   [osa-miR827b:108-128]

-c       c     u    c               c     aug  u    -auug   aauaauuga    gc 
  caugaac uguuu guug uggucaucuagcuac cgugc   cc ggag     gag         cgau  a
  ||||||| ||||| |||| ||||||||||||||| |||||   || ||||     |||         ||||   
  gugcuug ACAAA CGAC ACCAGUAGAUUggug gcacg   gg ucuc     uuc         gcug  g
ga       a     -    U               c     ---  u    gguua   --------g    ac 

>zma-MIR396c (-22.50)   [zma-miR396c:11-32]

-       g  U   -   G   U  UUGAA UG  a 
 cgggcau cu UCC ACA GCU UC     C  ug a
 ||||||| || ||| ||| ||| ||     |  ||  
 guucgua gg agg ugu ugg gg     g  gc c
g       a  u   c   a   u  uggug gu  u 

>zma-MIR396d (-20.60)   [zma-miR396d:11-32]

---- g     --  uUU    AG   UU  UGAA UG  a 
    c ggcau  gc   CCAC  GCU  CU    C  ug a
    | |||||  ||   ||||  |||  ||    |  ||  
    g ucgug  cg   ggug  ugg  gg    g  gc c
ugug g     gu  --u    -g   -u  ugcg gu  u 

>gma-MIR167d (-51.44)   [gma-miR167d:21-41]

aagg   -a   --     aa     A   -  -             cuuu       gggagc 
    guc  caa  gggaa  agUGA GCU GC CAGCAUGAUCUAg    gguuagu      c
    |||  |||  |||||  ||||| ||| || |||||||||||||    |||||||       
    cag  guu  uccuu  ucacu cga cg gucguacuggauc    ccaaucg      a
----   ag   ua     cc     c   u  u             acuc       ugagag 

>gma-MIR396c (-47.50)   [gma-miR396c:21-41]

caac        ------u    c         GC              u     uagug  a 
    aaguccug       uaug uuUUCCACA  UUUCUUGAACUUcu augcc     ca u
    ||||||||       |||| |||||||||  |||||||||||||| |||||     || u
    uucaggau       guac aaaaggugu  aaagaauuugaaga uacgg     gu a
----        cuaaacu    a         aa              -     -ugua  u 

>gma-MIR1507b (-48.00)   [gma-miR1507b:72-92]

     a    -                  a     au  uauu uc      
guuug caga gauguauggagugagaga gggaa  ga    u  cgauc 
||||| |||| |||||||||||||||||| |||||  ||    |  |||| c
caagc GUCU CUACAUACCUUACUCUcu cccuu  cu    a  gcuac 
     a    G                  -     cu  ---c uu      

>gma-MIR1508b (-45.30)   [gma-miR1508b:65-85]

aauu                    a      a   -   uuaca      
    gcuauucaacugcuauuccc uuucua acc uug     cgagc 
    |||||||||||||||||||| |||||| ||| |||     |||| a
    uggugaGUUGACGAUAAGGG AAAGAU ugg aac     guucu 
uucg                    G      c   u   ---ua      

>gma-MIR1510b (-43.30)   [gma-miR1510b:63-83]

uuu      g   a                 u   -u      -  g 
   auggaa ugg gggauagguaaaacaac acu  cuguaa aa u
   |||||| ||| ||||||||||||||||| |||  |||||| ||  
   uaccuu aCC CCUUAUCCAUUUUGUUG uga  gauauu uu a
auc      a   A                 U   uu      g  a 

>gma-MIR2107 (-9.30)   [gma-miR2107:4-24]

-aucCA     CC    -CC  U   a 
      AACCU  GUAG   UG AUC a
      |||||  ||||   || |||  
      uugga  cauc   ac uag a
cuacac     cu    cuc  c   c 

>gma-MIR2108a (-15.10)   [gma-miR2108a:8-28]

        U    UGUU    UU     a 
cuguguuU AAUG    GUGU  GUCGG a
|||||||| ||||    ||||  ||||| c
gacgcgaa uugu    uaca  uaguc c
        -    -uuu    -u     c 

>gma-MIR2108b (-14.10)   [gma-miR2108b:4-24]

       --UG          - UG    ccccu 
guuUUAA    UGUUGUGUUU G  AGaa     g
|||||||    |||||||||| |  ||||      
cgggauu    gcgacgcgaa u  uuuu     a
       uuga          u gu    acauu 

>gma-MIR2109 (-41.80)   [gma-miR2109:3-22]

    C        U          ---a     acu 
ggUG GAGUGUCU CGCCUCUGag    gagau   a
|||| |||||||| ||||||||||    |||||    
ccac cucauaga gcggaggcuc    cucua   u
    a        u          cgaa     gag 

>lja-MIR167 (-53.62)   [lja-miR167:21-41]

guuc    -a  -ug      u           GC        ag      uucuu 
    gugc  cc   caauag UGAAGCUGCCA  AUGAUCUG  cuuacc     g
    ||||  ||   |||||| |||||||||||  ||||||||  ||||||     u
    uacg  gg   guuguc acuucgacggu  uacuagac  gaaugg     a
----    aa  uaa      c           -a        aa      uaaua 

>lja-MIR396 (-46.66)   [lja-miR396:16-36]

gu   c       uc            C          ---uucaau  -    c 
  ccu uuuguau  UUCCACAGCUUU UUGAACUGca         ug caug a
  ||| |||||||  |||||||||||| ||||||||||         || |||| u
  gga agauaua  agggugucgaaa aacuuggcgu         ac guac g
-g   u       ga            u          uuuauucuc  a    c 

>vun-MIR1507a (-50.10)   [vun-miR1507a:78-98]

  a ua    g    -                  a        c ccuuu        
gu g  uuug caga gguguauggagugagaga gggaaaaa g     gccgauc 
|| |  |||| |||| |||||||||||||||||| |||||||| |     |||||| u
cg u  aagc GUCU CUACAUACCUUACUCUcu ccuuuuuu c     uggcuac 
  a gc    a    G                  -        u ----u        

>tca-mir-9a (-26.80)   [tca-miR-9a:10-32]

-   aua  uU       U        G     --g    g 
 cug   uu  CUUUGGU AUCUAGCU UAUGA   uauu u
 |||   ||  ||||||| |||||||| |||||   ||||  
 gac   aa  gaggcca uggaucga auacu   auaa u
u   caa  uu       u        a     aca    u 

>tca-bantam (-30.40)   [tca-bantam:52-74]

ucagc   a     cu                 ga    uaua 
     gag cgaaa  gguuuucacagugauuu  caga    u
     ||| |||||  |||||||||||||||||  ||||     
     cuu guuUU  UCGAAAGUGUUACUAGA  GUcu    u
----a   -     AG                 --    uagu 

>tca-mir-970 (-46.90)   [tca-miR-970:57-77]

aaac  u       gc    ca         guac       guua 
    ga gccggcg  agcu  gcguguguc    ugauagu    u
    || |||||||  ||||  |||||||||    |||||||     
    cu uggccgc  UCGG  CGCACACAG    ACUaucg    c
uccu  c       UA    --         -AAU       auca 

>tca-mir-263a (-42.70)   [tca-miR-263a:15-38]

guga   ua   -   C A        G    AA        -  uc 
    gca  ggc cuG G AUGGCACU GAAG  UUCACggg gu  u
    |||  ||| ||| | |||||||| ||||  |||||||| ||  u
    ugu  ccg gac c uaccguga uuuc  aggugccc ca  c
--cc   uc   a   u c        g    --        u  cg 

>tca-mir-279b (-31.40)   [tca-miR-279b:59-80]

gguaguuauc     g    u        a         g    u  ua 
          cuaaa uuuu gaugggug ggguuuggu caug uu  u
          ||||| |||| |||||||| ||||||||| |||| ||   
          gguuu aaaA CUACUCAC CCUAGAUCA GUac aa  u
-------ugu     a    C        A         -    u  uu 

>tca-mir-993 (-41.04)   [tca-miR-993:55-77]

ggca         uc    c      uc          uagaau 
    cauccguga  uacc uguaga  cgggcuuuug      u
    |||||||||  |||| ||||||  ||||||||||       
    guaggcauU  AUGG ACAUCU  GCUCGAAGac      u
-aag         CU    -      CU          uagauu 

>tca-mir-965 (-42.50)   [tca-miR-965:63-84]

-gg  -  cucc       -  cu    u            c   g   -  -  u 
   cg cg    gauugga cc  gggg ggaaaguuguac gcu aug gu ga u
   || ||    ||||||| ||  |||| |||||||||||| ||| ||| || ||  
   gc gc    cuaaccu gg  UCCC CUUUUCGAUAUG CGA Uac ca cu u
cua  a  ---a       u  uU    -            -   A   a  u  u 

>tca-mir-315 (-34.10)   [tca-miR-315:12-33]

gu       -gcUUU            A       gggug 
  uccuuuu      UGAUUGUUGCUC GAAAGCc     u
  |||||||      |||||||||||| |||||||      
  aggagaa      acuaauaacggg cuuucgg     u
-c       accuuu            -       aaaga 

>tca-mir-1000 (-54.50)   [tca-miR-1000:15-35]

----------------ac            AUAU       UCA        -  - g 
                  ggcucggccaug    UGUCCUG   CAGCAGUa cu g u
                  ||||||||||||    |||||||   |||||||| || |  
                  ccgggccgguac    acagggc   gucgucau ga c u
cccgccgcagccgguucu            cagu       uuc        u  g c 

>tca-mir-981 (-32.60)   [tca-miR-981:61-82]

uacaagacuuaua       a   -a         -g    ucg      auu 
             ucucaua guu  cggguuucg  ggca   gaaccg   u
             ||||||| |||  |||||||||  ||||   ||||||   u
             aggguau cag  GUCCAAAGC  CUGU   CUUggu   a
---------acac       -   AC         AG    -UG      cga 

>tca-mir-304 (-19.70)   [tca-miR-304:13-35]

augcaauaga  AA       A    -   U      c  uu   u 
          cu  AUCUCAA UUGU AAA GUGUAc ua  guu a
          ||  ||||||| |||| ||| |||||| ||  ||| a
          gg  uagaguu aaua uuu cgcaug au  uaa a
-ccuuuacca  gc       a    a   c      a  uu   u 

>aga-mir-190 (-40.80)   [aga-miR-190:24-47]

uguuuggugg       u      -            AU      U  u   gau 
          gacaguu cggugA GAUAUGUUUGAU  UCUUGG UG uaa   u
          ||||||| |||||| ||||||||||||  |||||| || |||    
          cugucag gccauu uuauacaaacua  aggacc ac auu   u
--------ug       u      a            --      c  u   aac 

>aga-mir-929 (-42.00)   [aga-miR-929:53-73]

-----c    gcg         a        ag         -   uu 
      cuac   ugggauuaa uugacucu  uagggaguc cuu  a
      ||||   ||||||||| ||||||||  ||||||||| |||   
      gaug   gccuuaGUU GACUGAGG  AUCCCUCag gag  u
ccacgu    ---         A        CA         c   ca 

>aga-mir-927 (-38.30)   [aga-miR-927:16-37]

--ua       g               CU       AC    g      
    guuaaug uuuguUUUAGAAUUC  ACGCUUU  Ccgu auuaa 
    ||||||| |||||||||||||||  |||||||  |||| |||| a
    caauugc aagcaaagucuuagg  ugcgaaa  ggcg ugaug 
gcaa       a               uu       -c    -      

>aga-mir-993 (-42.80)   [aga-miR-993:85-109]

ugcgc  -    g   cc    -      uuc          -     -----   aau      c 
     uc cucc uga  uacc cuguag   cgggcuuuug ugggu     uga   auuaua a
     || |||| |||  |||| ||||||   |||||||||| |||||     |||   ||||||  
     ag gagg acU  AUGG GAUAUC   GCUCGAAGac auucg     acu   uaauau u
----a  u    g   CU    A      UUU          u     cauau   --c      a 

>aga-mir-988 (-39.10)   [aga-miR-988:66-87]

cug    gcauug               u u    ug   -----    g      u 
   ugga      gacauugccggugug g uuug  aca     auga auuuaa a
   ||||      ||||||||||||||| | ||||  |||     |||| ||||||  
   gccu      uuguggcgguCGCAC C AAAC  UGU     uacu ugaauu g
--a    ------               U C    GU   UCCCC    -      u 

>aga-mir-970 (-41.10)   [aga-miR-970:64-84]

-au  c  a            a    u        ---u    a   ua u 
   gg ug cggaagauagcc gcgu uguuuuau    uggu ugu  c a
   || || |||||||||||| |||| ||||||||    |||| |||  |  
   cc ac gccuuuUAUCGG CGCA ACAGAAUA    aucg acg  g c
agc  a  -            -    C        CUau    a   uc u 

>aga-mir-957 (-43.60)   [aga-miR-957:59-80]

-      -    gu  g              g        uau   g 
 ugauca cugc  gc uuaguuuugggcgg uuuuagug   uuc a
 |||||| ||||  || |||||||||||||| ||||||||   ||| u
 auuggu gacg  CG AGUCAAAACCUGCC AAAGUuau   aag g
c      a    gu  G              -        cuu   a 

>aga-mir-137 (-33.50)   [aga-miR-137:55-76]

-aa   -     ug  c   c       ug   uac     c  ug 
   aac uuggu  gc acg guauucu  ggu   uaaca ac  u
   ||| |||||  || ||| |||||||  |||   ||||| ||  u
   uug gauca  uG UGC CAUAAGA  UCG   AUugu ug  u
aug   u     gu  A   A       GU   -UU     -  ua 

>aga-mir-965-1 (-35.20)   [aga-miR-965:63-84]

cgaa  aaau        u     a      u       a  c    u c  a 
    gu    cgacgaau cugaa ggggaa gcuguac cu uaug g ua a
    ||    |||||||| ||||| |||||| ||||||| || |||| | ||  
    cg    guugcuug gauUU CCCUUU CGAUAUG GA AUac c au a
-aaa  -agc        c     A      U       C  -    - u  a 

>aga-mir-965-2 (-35.20)   [aga-miR-965:63-84]

cgaa  aaau        u     a      u       a  c    u c  a 
    gu    cgacgaau cugaa ggggaa gcuguac cu uaug g ua a
    ||    |||||||| ||||| |||||| ||||||| || |||| | ||  
    cg    guugcuug gauUU CCCUUU CGAUAUG GA AUac c au a
-aaa  -agc        c     A      U       C  -    - u  a 

>aga-mir-1000 (-44.60)   [aga-miR-1000:15-35]

--------      a       AU U       UC         cu  uu 
        ccuagc gucgaug  A UGUCCUG  ACAGCAGUa  uu  g
        |||||| |||||||  | |||||||  |||||||||  ||   
        ggaucg cagcuac  u acagggc  uguugucau  ga  c
uacuuuug      -       cu u       uu         uu  uc 

>aga-mir-286 (-31.80)   [aga-miR-286:61-83]

   -auaa         --au   -   a          --uc c gu a 
guc     uuuggggcg    ugu cgg cuagucgcug    g a  c u
|||     |||||||||    ||| ||| ||||||||||    | |  |  
cag     aaaucCUGC    ACA GCC GAUCAGUgau    c u  g u
   caagc         GCUC   A   A          ucca u ug c 

>aga-mir-263b (-37.60)   [aga-miR-263b:16-36]

-ug     uua     CU      UG     A       uggau  uac 
   accaa   uggac  UGGCAC  GGAGA UUCACag     cg   c
   |||||   |||||  ||||||  ||||| |||||||     ||    
   ugguu   acuug  accgug  uuucu agguguc     gc   a
ccg     uag     cu      cu     -       --uuu  uau 

>aga-mir-309 (-30.33)   [aga-miR-309:49-70]

aag            cc      ag    uccgauu 
   augcgacaaacu  guccag  ggug       u
   ||||||||||||  ||||||  ||||       c
   uACGCUGUUUGA  CGGGUC  CUac       a
aaa            AA      -A    ucaagua 

>ame-mir-252 (-35.36)   [ame-miR-252:16-37]

aau  u u  ug  c         A U  C       ugacuagguug   u g 
   cc g cu  uu AUAAGUACU G GC GCAGGAG           ggu a a
   || | ||  || ||||||||| | || |||||||           ||| |  
   gg c gg  aa uauucguga c cg cguccuc           cca u a
---  c u  gu  c         a u  u       -------uaua   u a 

>ame-mir-13b (-38.10)   [ame-miR-13b:50-72]

g        -        -u        gc   -uug  u 
 cgauccaa ucgucaaa  ugguugug  gug    cu u
 |||||||| ||||||||  ||||||||  |||    || u
 gcuagguU AGCAGUUU  ACCGACAC  Uac    ga c
-        U        UU        UA   uuua  u 

>ame-mir-996 (-37.22)   [ame-miR-996:56-76]

-        aauu  a            a  g    g    uuuug 
 aaacagau    cc uaggcgaguaug au uggu cacg     a
 ||||||||    || |||||||||||| || |||| ||||     u
 uuugucua    gg aUCUGCUCAUAC UA AUCA GUgc     u
u        --au  c            A  G    -    uuuau 

>ame-mir-263b (-39.60)   [ame-miR-263b:16-36]

aa   -  ug      CU     C  G    A     a   -      
  ggu uc  gcgggu  UGGCA UG AAGA UUCAC gau gugca 
  ||| ||  ||||||  ||||| || |||| ||||| ||| |||| g
  cca ag  cguuca  accgu ac uucu aggug cua uaugu 
ag   u  gu      cu     a  g    -     -   a      

>ame-mir-92b-1 (-40.40)   [ame-miR-92b:56-77]

-cacgaa                 a    uaa     --au    ag 
       gcguauucaauuagguc ggac   ugcaa    augu  u
       ||||||||||||||||| ||||   |||||    ||||  g
       cgcgugaguuAGUCCGG CCUG   ACGUU    uaca  u
cuaaaug                 C    CCC     AAac    gc 

>ame-mir-92b-2 (-40.40)   [ame-miR-92b:56-77]

-cacgaa                 a    uaa     --au    ag 
       gcguauucaauuagguc ggac   ugcaa    augu  u
       ||||||||||||||||| ||||   |||||    ||||  g
       cgcgugaguuAGUCCGG CCUG   ACGUU    uaca  u
cuaaaug                 C    CCC     AAac    gc 

>ame-mir-985 (-13.90)   [ame-miR-985:51-71]

gaaaggguagaaacgaucgaucgaucgacaaa  g auu    ---     u 
                                ug c   uauu   acguu c
                                || |   ||||   |||||  
                                AC G   AUAA   UGUAA A
------------------ugacuuuauuaugg  G GCU    CCU     A 

>ame-mir-1000 (-42.70)   [ame-miR-1000:13-33]

-----ac     ----        U     UG     G     c  -  u 
       gucgc    cggggAUA UGUCU  UCACA CAGUa gc cu u
       |||||    |||||||| |||||  ||||| ||||| || ||  
       cggug    gcuccugu acagg  agugu gucau ug ga a
ugcuucc     cccu        u     gu     g     -  a  a 

>ame-mir-1006 (-8.10)   [ame-miR-1006:39-62]

-au    ucu   aa         aaa     a 
   uggu   gaa  gaauugagu   uuuau u
   ||||   |||  |||||||||   ||||| u
   ACUA   CUU  UUUAGCUUA   AAAua a
AUU    --U   -C         ---     a 

>ame-mir-981 (-40.80)   [ame-miR-981:58-79]

gggaa   a    -aa   c          -     g       -u  u 
     ugg ugca   cgu uggguuucgu gacag cgagccg  uc u
     ||| ||||   ||| |||||||||| ||||| |||||||  || u
     acc acgu   gcA GUCCAAAGCA CUGUU GCUUggu  ag a
---aa   a    cua   C          A     -       uc  c 

>ame-mir-316 (-42.30)   [ame-miR-316:16-38]

---      cc      gU    U     G        CC  u  aa 
   gugugg  gagggu  GUCU UUUCC CUUUGCUG  Gc ga  u
   ||||||  ||||||  |||| ||||| ||||||||  || ||  g
   cacgcc  cuccca  cgga aaggg gaaacgac  cg cu  g
aac      --      gc    c     -        --  c  ga 

>ame-mir-993 (-37.86)   [ame-miR-993:56-78]

ggca         uc    c      uc          uagaau 
    cauucguga  uacc uguaga  cgggcuuuug      u
    |||||||||  |||| ||||||  ||||||||||      g
    guaggcauU  AUGG ACAUCU  GCUCGAAGac      u
-aca         CU    -      CU          uauaaa 

>bmo-mir-252 (-32.00)   [bmo-miR-252:16-37] [bmo-miR-252*:53-74]

aacuaaa   ug  cC        -  U  C       c  uuu 
       ccu  uu  UAAGUACU AG GC GCAGGAG gu   g
       |||  ||  |||||||| || || ||||||| ||    
       gga  aA  AUUCGUGA UC CG CGUCCuc ua   u
--auuug   gu  CU        A  -  U       -  uga 

>bmo-mir-970 (-48.30)   [bmo-miR-970*:16-40] [bmo-miR-970:58-78]

---     gaa           UU       C      U     u  gac 
   uggag   uagacagAGCC  GCGUGUG UCUUAU GGUAg gu   u
   |||||   |||||||||||  ||||||| |||||| ||||| ||    
   accuc   gucugUCUCGG  CGCACAC AGAAUA CUauc ua   g
gcg     --a           --       -      -     -  aua 

>bmo-mir-965 (-43.22)   [bmo-miR-965:24-47] [bmo-miR-965*:63-84]

auauaaaug  -           aC             G    A    ucaau 
         gc ugcauagcuaa  GGGAGAAGCUAUA CGCU UAUG     a
         || |||||||||||  ||||||||||||| |||| ||||     u
         cg acguauuggUU  CCCUUUUCGAUAU GCGA AUac     u
-cucuuaua  u           -C             -    -    uaaaa 

>bmo-mir-274 (-39.60)   [bmo-miR-274:22-47] [bmo-miR-274*:62-83]

ggcuguu         a   g    -    C     CU       - G   u 
       guuaggcga guu GUUU GUGA CGUCA  AACGGGC A Ugu a
       ||||||||| ||| |||| |||| |||||  ||||||| | |||  
       caguucgcu caa UAAA CGCU GCGGU  UUGCUcg u gca a
-------         -   G    A    A     -U       u g   u 

>bmo-mir-993b (-46.30)   [bmo-miR-993b*:16-38] [bmo-miR-993b:53-75]

---------------------------------   a  uu      c    C      UC          uaaaa 
                                 ggc ca  cgugau UACC UGUAGA  CGGGCUUUCG     a
                                 ||| ||  |||||| |||| ||||||  ||||||||||      
                                 ccg gu  gcacUA AUGG ACAUCU  GCUCGAAAgc     a
gucaagaacugauuaacaucuuuuccaccgcac   -  cg      U    -      CU          uaaac 

>bmo-mir-993a (-36.34)   [bmo-miR-993a*:14-37] [bmo-miR-993a:55-77]

ggca  uu     UC    C      UC          uagauu 
    ca  cguga  UACC UGUAGA  CGGGCUUUUg      a
    ||  |||||  |||| ||||||  ||||||||||       
    gu  gcacU  AUGG ACAUCU  GCUCGAAGac      a
-aag  cg     CU    -      CU          uacauu 

>ebv-mir-BART21 (-39.60)   [ebv-miR-BART21-5p:12-32] [ebv-miR-BART21-3p:46-67]

          uU        AAG       A   agu 
gggcugggua  CACUAGUG   GCAACUA Cac   u
||||||||||  ||||||||   ||||||| |||    
ccuggccuaU  GUGGUCAC   UGUUGAU gug   a
          UU        CCG       C   cag 

>ebv-mir-BART22 (-35.80)   [ebv-miR-BART22:43-65]

       g         c   ag   -    -  u 
gucacag ugcuagacc ugg  uug aacc ag a
||||||| ||||||||| |||  ||| |||| || c
caguguU AUGAUCUGG ACU  AAC UUgg uc c
       G         U   GA   A    c  a 

>hsa-mir-2110 (-34.10)   [hsa-miR-2110:8-29]

       UU       C      --    U  g   u 
caggggu  GGGGAAA GGCCGC  UGAG Ga gcg c
|||||||  ||||||| ||||||  |||| || ||| g
guucuca  cuccuuu cuggcg  acuc uu ugu g
       cc       u      cc    u  g   c 

>ath-MIR2111a (-67.30)   [ath-miR2111a:28-48] [ath-miR2111a*:111-131]

   ug   a      ---        c                    U     gcuuaauuuacgcaggaaauuuguaua 
cga  aug guauug   gugaggac gggUAAUCUGCAUCCUGAGG UUAaa                           c
|||  ||| ||||||   |||||||| |||||||||||||||||||| |||||                            
gcu  ugc cauaac   cauucuug uCCAUUAGGCGUAGGGCUCC Gauuu                           g
   ca   a      auu        c                    U     uccauaugauuauguguaugcauauac 

>ath-MIR2111b (-46.60)   [ath-miR2111b:45-65] [ath-miR2111b*:107-127]

   c   a  aa    aagaug   -  --a     -   u   c      U   C         U      ccaauuaa  a       au 
caa aac cg  gaag      aag gu   cuuga uga gaa gggUAA CUG AUCCUGAGG UUAaaa        gc uauacau  g
||| ||| ||  ||||      ||| ||   ||||| ||| ||| |||||| ||| ||||||||| ||||||        || |||||||   
guu uug gc  uuuc      uuc ca   gaacu auu cuu uCCAUU GAC UAGGGCUCC Aauuuu        ug auaugua  c
   -   -  aa    ----ga   a  aaa     c   c   c      U   A         U      --------  -       ag 

>ath-MIR2112 (-54.84)   [ath-miR2112-5p:14-34] [ath-miR2112-3p:123-143]

guau  a                     C  U   a    g   aa   accaaua  ggu    agcgaaa   ac 
    ga augaugCGCAAAUGCGGAUAU AA GUa auca gac  caa       ga   gcuc       aca  a
    || ||||||||||||||||||||| || ||| |||| |||  |||       ||   ||||       |||   
    cu uacuACGCGUUUACGCCUAUA UU cau uagu cug  guu       cu   uggg       ugu  a
cagu  c                     U  C   a    a   gg   acaaaga  auu    --aaaag   aa 

>hsa-mir-2114 (-34.70)   [hsa-miR-2114:13-34] [hsa-miR-2114*:49-69]

  u   u   ccU        C     A  -G    gaua 
cc cca gcu   AGUCCCUU CUUGA GC  GUCg    a
|| ||| |||   |||||||| ||||| ||  ||||     
gg ggu cga   UCAGGGAA GAACU CG  Cagu    u
  u   -   acU        C     C  AG    acac 

>hsa-mir-2115 (-43.50)   [hsa-miR-2115:21-42] [hsa-miR-2115*:58-79]

acuguc    - --        c           CUC        ggaa  a 
      aucc c  acugcuuc AGCUUCCAUGA   CUGAUGGA    uc c
      |||| |  |||||||| |||||||||||   ||||||||    ||  
      uagg g  ugacgaaG UCGGAGGUACU   GACUACuu    ag a
auuuac    a ua        A           UAA        ---a  u 

>hsa-mir-2116 (-42.60)   [hsa-miR-2116:14-34] [hsa-miR-2116*:51-71]

ga     g  a         A    A     U    cca 
  ccuag cu ggGGUUCUU GCAU GGAGG CUuc   u
  ||||| || ||||||||| |||| ||||| ||||   g
  ggauc ga CCUCAAGAA CGUA CCUCC gaag   c
-a     a  C         C    C     u    aau 

>hsa-mir-2117 (-33.10)   [hsa-miR-2117:51-71]

gcucu    uacu       --    u  u       --a  a 
     gauu    ucugucc  ggca gg gaacagc   gg u
     ||||    |||||||  |||| || |||||||   || u
     cuag    aGACAGG  CCGU UC CUUGUcg   uc g
----u    -ucu       AA    U  U       aug  g 

>hsa-mir-548q (-41.60)   [hsa-miR-548q:8-29]

auauu   C     C         G C G                 c  uu 
     agG UGGUG AAAAGUAAU G G uuuuugccauuacuuuu au  u
     ||| ||||| ||||||||| | | ||||||||||||||||| ||  u
     ucc accac uuuucauua u c aaaaacgguaaugaaaa ua  a
-----   a     u         g a g                 u  cc 

>bfl-mir-278 (-52.30)   [bfl-miR-278:51-72]

--          c             uu    a   gucgg  u 
  ucucccccgc cggacgagaaccc  cgcc guc     gc u
  |||||||||| |||||||||||||  |||| |||     ||  
  agagggggUG GCUUGCUUUUGGG  GUGG Uag     cg u
gc          A             --    C   ----a  a 

>lmi-mir-307 (-25.30)   [lmi-miR-307*:1-23] [lmi-miR-307:39-61]

--A         CCU  G       uc gu 
   CUCACUCAA   GG UGUGAUG  c  u
   |||||||||   || |||||||  |  g
   GAGUGAGUU   CC ACACUgc  g  a
AGC         CCU  A       cc ag 

>lmi-mir-276 (-27.20)   [lmi-miR-276*:2-23] [lmi-miR-276:37-58]

-u    A     AG         G    u 
  AGCG GGUAU  AGUUCCUAC ugug u
  |||| |||||  ||||||||| ||||  
  UCGU CCAUA  UCAAGGAUg auau g
UC    G     CU         -    u 

>lmi-mir-281 (-25.90)   [lmi-miR-281*:1-22] [lmi-miR-281:36-58]

---        -UA     C      --  a 
   AAGAGAGC   UCCGU GACAGU  ac g
   ||||||||   ||||| ||||||  || u
   UUCUCUCG   AGGUA CUGUca  ug g
AAU        UUG     -      aa  a 

>lmi-mir-210 (-29.50)   [lmi-miR-210*:1-22] [lmi-miR-210:40-62]

--        -G    U        uuag gau 
  AGCUGCUG  ACAC GCACAAGA    c   u
  ||||||||  |||| ||||||||    |    
  UCGGCGAC  UGUG CGUGUUCu    g   a
UA        AG    -        --ca aaa 

>lmi-mir-10 (-23.40)   [lmi-miR-10:1-22] [lmi-miR-10*:38-59]

-U   -  G    U           ug    
  ACC CU UAGA CCGAAUUUGUu  aca 
  ||| || |||| |||||||||||  || u
  UGG GA AUCU GGCUUAAAcag  uga 
UU   A  G    U           cg    

>lmi-mir-9a (-24.20)   [lmi-miR-9a:1-23] [lmi-miR-9a*:39-61]

--U       U        G     -gu  a 
   CUUUGGU AUCUAGCU UAUGA   gc u
   ||||||| |||||||| |||||   ||  
   GAAGCCA UGGAUCGA AUAcu   ug g
AUU       U        A     guc  u 

>lmi-mir-8 (-22.60)   [lmi-miR-8*:1-22] [lmi-miR-8:39-61]

--    -     G     C      uug ga 
  CAUC UUACC GGCAG AUUAGA   c  c
  |||| ||||| ||||| ||||||   |   
  GUAG AAUGG CUGUC UAAUcu   g  u
CU    C     A     A      uua ag 

>mcv-mir-M1 (-34.10)   [mcv-miR-M1-5p:16-37] [mcv-miR-M1-3p:50-71]

   -u     ac    U      AUU     G      g uu 
agg  gccau  guuc GGAAGA   UCUAG UACACU g  c
|||  |||||  |||| ||||||   ||||| |||||| |   
ucc  uggug  uAAG CCUUCU   AGGUC GUGUgg u  c
   uc     gu    U      CUU     -      g ua 

>bra-MIR157a (-67.60)   [bra-miR157a:14-34]

      c    ugUU        -           u     --u        a  aca   gua    -     a   c 
gugaug uggu    GACAGAAG AUAGAGAGCAC aagga   gacaugca gu   uau   ugua ucauc cac g
|||||| ||||    |||||||| ||||||||||| |||||   |||||||| ||   |||   |||| ||||| ||| c
uauuac acca    cugucuuc uaucucucgug uuucu   cuguacgu cg   aua   acau aguag gug c
      c    ----        a           c     cau        c  ---   aaa    u     -   u 

>bra-MIR159a (-77.80)   [bra-miR159a:163-183]

aa            a         c      -uu    ------      aga      g  a  c    a uc     -    cu       aua 
  guagggcuccuu uaguucaaa gagagu   agca      ggguaa   aaagcu cu ag uaug a  ccaua agcc  aauccuu   u
  |||||||||||| ||||||||| ||||||   ||||      ||||||   |||||| || || |||| |  ||||| ||||  |||||||   a
  cAUCUCGAGGGA GUUAGGUUU uucuca   ucgu      cccguu   uuucga ga uc auac u  gguau uugg  uuaggaa   u
-a            A         c      uuu    uaauuu      caa      g  c  u    a uc     a    -u       aaa 

>bra-MIR160a (-57.10)   [bra-miR160a:26-46] [bra-miR160a*:86-106]

ua       u      a  ugu      C       CU         c u ua  c         
  uguguag uguaua ga   guaUGC UGGCUCC  GUAUGCCAu c c  ag ucaucgac 
  ||||||| |||||| ||   |||||| |||||||  ||||||||| | |  || ||||||| c
  auacauu acauau cu   uAUACG ACCGAGG  UAUGCGgua g g  uc aguaguua 
-c       u      a  -uu      U       AG         a u cc  c         

>bra-MIR164a (-39.70)   [bra-miR164a:10-30]

c   cac       A  CA             ccaacaa   c    u 
 cuc   guUGGAG AG  GGGCACGUGCAaa       aca gaga c
 |||   ||||||| ||  |||||||||||||       ||| ||||  
 gag   caaccuc uc  cucgugcacguuu       ugu cucu u
c   -ua       c  ac             -----aa   a    a 

>bra-MIR167a (-57.90)   [bra-miR167a:18-38]

     ac   -  u u a         C             ua  -     uu ---         ua 
ggugc  cgg ca c g UGAAGCUGC AGCAUGAUCUAgu  ac uuuau  c   uccguuguu  u
|||||  ||| || | | ||||||||| |||||||||||||  || |||||  |   |||||||||  c
cuacg  guc gu g c acuuugaug uuguacuagauua  ug gaaua  g   agguaacag  c
     cu   a  u c c         c             gc  u     gg aaa         ua 

>bra-MIR167b (-54.90)   [bra-miR167b:18-38]

     -    g  ucu a         C             ua  u   uu     guuga      g 
ggugu acag ca   g UGAAGCUGC AGCAUGAUCUAau  ac uuc  ucucu     uuuuau a
||||| |||| ||   | ||||||||| |||||||||||||  || |||  |||||     ||||||  
ccacg uguc gu   c acuuugacg uuguacuagauua  ug gag  agaga     aaggua c
     c    a  uac c         c             gc  u   -u     ----a      a 

>bra-MIR167c (-54.90)   [bra-miR167c:18-38]

     -    g  ucu a         C             ua  u   uu     guuga      g 
ggugu acag ca   g UGAAGCUGC AGCAUGAUCUAau  ac uuc  ucucu     uuuuau a
||||| |||| ||   | ||||||||| |||||||||||||  || |||  |||||     ||||||  
ccacg uguc gu   c acuuugacg uuguacuagauua  ug gag  agaga     aaggua c
     c    a  uac c         c             gc  u   -u     ----a      a 

>bra-MIR167d (-48.10)   [bra-miR167d:18-38]

    cac   -  u u a         C               --u   ---     c        
ggcg   cgg ca c g UGAAGCUGC AGCAUGAUCUAauua   cuu   ucuuu ucuguug 
||||   ||| || | | ||||||||| |||||||||||||||   |||   ||||| |||||| a
ccgc   guc gu g c acuuugacg uuguacuagauuagu   gag   agaaa agguagc 
    ucu   a  u c c         c               ugu   uac     -        

>bra-MIR171a (-42.60)   [bra-miR171a:65-85]

  a        ug             -     aca    uuu 
cg gauauugg  ugguucaaucaga aaacc   cucu   g
|| ||||||||  ||||||||||||| |||||   ||||    
GC CUAUAACC  GCCGAGUUaguuu uuugg   gaga   u
  A        GU             g     cua    ugu 

>bra-MIR171b (-41.80)   [bra-miR171b:74-94]

u   --caa   a      a ug          a     uc   c    agu 
 ggu     gcg gauauu g  cgguucaauc aauag  uca ucuu   u
 |||     ||| |||||| |  |||||||||| |||||  ||| ||||    
 cca     cGC CUAUAA C  GCCGAGUUag uuguu  agu agag   g
a   auaua   A      C GU          c     uu   u    aua 

>bra-MIR171c (-36.90)   [bra-miR171c:67-87]

   a      a ug          a     --   ua    uag 
gcg gauauu g  cgguucaauc aauag  ucg  cucu   c
||| |||||| |  |||||||||| |||||  |||  ||||    
cGC CUAUAA C  GCCGAGUUag uuguu  ggc  gaga   u
   A      C GU          c     uu   ua    uua 

>bra-MIR171d (-43.90)   [bra-miR171d:73-93]

   -a     a      a ug          a     --   ugu    acu 
ggu  acgcg gauauu g  cgguucaauc aauag  ucg   ucuc   u
|||  ||||| |||||| |  |||||||||| |||||  |||   ||||    
cca  ugcGC CUAUAA C  GCCGAGUUag uuguu  ggc   agag   g
   ac     A      C GU          c     uu   --u    aua 

>bra-MIR171e (-41.30)   [bra-miR171e:84-104]

    a    uc  cuuu         c       c      --  ucc   uuacacacg 
acga agag  cu    gauauuggc ugguuca ucagau  cu   aga         u
|||| ||||  ||    ||||||||| ||||||| ||||||  ||   |||         a
ugcu ucuc  ga    CUAUAACCG GCCGAGU AGUcua  ga   ucu         c
    c    gu  --cu         C       U      uu  cuc   uacauauau 

>bra-MIR172a (-43.90)   [bra-miR172a:87-107]

    uu    a gc      c           a    gaa  uga     cu      u 
cguu  uugu g  gcagca caucaagauuc caug   au   aaaau  ccuaau u
||||  |||| |  |||||| ||||||||||| ||||   ||   |||||  |||||| u
gcag  aaca c  CGUCGU GUAGUUCUAAG guau   ua   uuuug  ggauua u
    cc    a UA      A           A    aug  uag     --      a 

>bra-MIR172b (-47.80)   [bra-miR172b*:8-28] [bra-miR172b:82-102]

u  a         C           A    -gaaau g   aa         ua 
 gu gguGCAGCA CAUUAAGAUUC CAug      u aga  acccuaauu  u
 || ||||||||| ||||||||||| ||||      | |||  |||||||||   
 ca cUACGUCGU GUAGUUCUAAG guau      a ucu  ugggauuaa  a
a  a         A           A    auguau g   --         uu 

>bol-MIR157a (-43.19)   [bol-miR157a:6-26]

   u           -           u     --u  c    a   acaagga 
ggu gUUGACAGAAG AUAGAGAGCAC aagga   ga augc agu       u
||| ||||||||||| ||||||||||| |||||   || |||| |||        
cca uaacugucuuc uaucucucgug uuucu   uu uacg uua       a
   -           a           u     cau  c    c   aaggaau 

>bol-MIR171a (-45.30)   [bol-miR171a:71-91]

   aug  a        ug             -aau  aca    uuu 
aca   cg gauauugg  cgguucaaucaga    cc   cucu   g
|||   || ||||||||  |||||||||||||    ||   ||||    
ugu   GC CUAUAACC  GCCGAGUUaguuu    gg   gaga   u
   -ga  A        GU             guuu  cua    ugu 

>bol-MIR172a (-43.90)   [bol-miR172a:87-107]

    uu    a gc      c           a    gaa  uga     cu      u 
cguu  uugu g  gcagca caucaagauuc caug   au   aaaau  ccuaau u
||||  |||| |  |||||| ||||||||||| ||||   ||   |||||  |||||| u
gcag  aaca c  CGUCGU GUAGUUCUAAG guau   ua   uuuug  ggauua u
    cc    a UA      A           A    aug  uag     --      a 

>bol-MIR172b (-47.80)   [bol-miR172b:82-102]

u  a         c           a    -gaaau g   aa         ua 
 gu ggugcagca cauuaagauuc caug      u aga  acccuaauu  u
 || ||||||||| ||||||||||| ||||      | |||  |||||||||   
 ca cUACGUCGU GUAGUUCUAAG guau      a ucu  ugggauuaa  a
a  a         A           A    auguau g   --         uu 

>bol-MIR398a (-34.66)   [bol-miR398a*:8-28] [bol-miR398a:71-91]

uc       A   U A           Auc   --uu     uuuaag 
  ucaaaGG GUG C UGAGAACACGG   cuc    guuuc      a
  ||||||| ||| | |||||||||||   |||    |||||      u
  aguUUCC CAC G ACUCUUGUGUu   gag    caaag      u
-a       C   U G           -au   uuac     ucaccu 

>sja-let-7 (-30.80)   [sja-let-7:3-23]

u    -- G     C            g    uuaaa 
 gGGA  G UAGUU GUUGUGUGGUuu cuua     a
 ||||  | ||||| |||||||||||| ||||      
 cccu  c gucag caacauaccaga gaau     u
a    uu g     c            a    ucuag 

>sja-mir-71 (-34.50)   [sja-miR-71:16-36]

     a  ag     U     A  AU  U          c 
gugau cu  ugcug GAAAG CG  GG AGUGAGAugc a
||||| ||  ||||| ||||| ||  || |||||||||| g
cacua ga  auggc cuuuc gc  cc ucgcucuacg u
     a  --     c     c  -c  u          u 

>sja-bantam (-23.00)   [sja-bantam:57-78]

  gu       u      c   g   --------    c   u 
aa  cggcuuu auugcg ucu aga        aaaa caa u
||  ||||||| |||||| ||| |||        |||| |||  
uu  GUCGAAA UAGCGC AGA Ucu        uuuu guu c
  UG       U      U   G   auuuauuu    c   a 

>sja-mir-125a (-27.70)   [sja-miR-125a:3-24]

  U -      A C     AU     -----    a      au 
gc C CCUGAG C CUUUG  UGUCu     cguu aacaua  u
|| | |||||| | |||||  |||||     |||| ||||||   
cg g ggacuc g gaaac  acgga     guaa uuguau  c
  u u      a u     cg     cuaau    a      au 

>sja-mir-125b (-29.20)   [sja-miR-125b:2-23]

aUC       C             a   auuaua   u 
   CCUGAGA UGAUAAUUGCUCu guu      uca u
   ||||||| ||||||||||||| |||      |||  
   ggacucu auuauuaacggga uaa      agu a
ugu       u             a   cauuug   a 

>sma-let-7 (-31.40)   [sma-let-7:3-23]

--     -- G     C            gcuu   a 
  ugGGA  G UAGUU GUUGUGUGGUuu    guc a
  |||||  | ||||| ||||||||||||    ||| a
  acccu  c gucag caacauaccaga    uag a
uu     uu g     c            -aau   u 

>sma-mir-71 (-36.20)   [sma-miR-71:17-37]

u     a  ag     U     A  AU  U          c 
 gugau cu  ugcug GAAAG CG  GG AGUGAGAugc g
 ||||| ||  ||||| ||||| ||  || |||||||||| a
 cacua ga  auggc cuuuc gc  cc ucgcucuacg u
g     a  --     c     c  -c  u          u 

>sma-bantam (-28.10)   [sma-bantam:45-66]

-  c  gu       u      c   g   aa  u 
 gg aa  cggcuuu auugcg ucu aga  au u
 || ||  ||||||| |||||| ||| |||  || a
 cc uu  GUCGAAA UAGCGC AGA Ucu  ug u
a  u  UG       U      U   G   ac  u 

>sma-mir-125a (-30.90)   [sma-miR-125a:3-24]

-  -UC      A C     AU     -----      -    a 
 gc   CCUGAG C CUUUG  UGCCu     uguuau uaca u
 ||   |||||| | |||||  |||||     |||||| ||||  
 cg   ggacuc g gaaac  acgga     acaaua augu a
a  uau      a u     cg     cuagu      c    c 

>sma-mir-125b (-30.60)   [sma-miR-125b:2-23]

-aUC       C              uuu    u   aa 
    CCUGAGA UGAUAAUUGCUCuu   auca gau  g
    ||||||| ||||||||||||||   |||| |||   
    ggacucu auuauuaacgagag   uagu uug  g
augu       c              ---    -   ag 

>ssc-mir-101-1 (-32.80)   [ssc-miR-101:55-75]

gac  -a  ug  c                    c a    guaua 
   ug  ac  uc uuuuucgguuaucaugguac g ugcu     u
   ||  ||  || |||||||||||||||||||| | ||||      
   ac  ug  gg aagAAGUCAAUAGUGUCAUG C AUgg     c
-cu  cg  gu  u                    A -    aaagu 

>ssc-mir-101-2 (-45.40)   [ssc-miR-101:50-70]

       cuggc                  a    gucca 
ggcugcc     ucaguuaucacagugcug ugcu     u
|||||||     |||||||||||||||||| ||||      
ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
       uaggA                  -    aaauc 

>ssc-mir-124a-1 (-38.10)   [ssc-miR-124a:59-79]

     ac   ------a      c  cc        a   ga        uaau 
ucaag  cag       cucugc cu  guguucac gcg  ccuugauu    g
|||||  |||       |||||| ||  |||||||| |||  ||||||||    u
aguuc  guc       gaggcg ga  CGUAAGUG CGC  GGAAUuaa    c
     ac   ggcaucc      a  AC        G   AC        caua 

>ssc-mir-133a (-38.00)   [ssc-miR-133a*:23-44] [ssc-miR-133a:61-81]

   - accca     uuu    a       AA  U  A        aacug 
cgg g     aaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
||| |     |||||   |||| |||||||  || || ||||||||      
gcc c     uuacg   cgau UCGACCA  UU CC UGGUUuag     u
   g gacag     cgu    G       AC  C  C        guaag 

>ssc-mir-1 (-46.50)   [ssc-miR-1:64-84]

     -u  c  a   -     gg g                gc     ---   a 
ccggu  ga gu ccu gcuug  g acauacuucuuuaugu  ccaua   ugg c
|||||  || || ||| |||||  | ||||||||||||||||  |||||   ||| c
ggcca  cu ca ggg cggac  u UGUAUGAAGAAAUGUA  GGUau   auc u
     cu  -  a   u     uu A                -A     cga   g 

>ssc-mir-450a (-36.20)   [ssc-miR-450a:28-49]

      caa  aaa     u      -  UU     U              cag 
gucugu   ag   gaugc aaacug gU  UGCGA GUGUUCCUAAUAUg   u
||||||   ||   ||||| |||||| ||  ||||| ||||||||||||||   a
uagaca   uc   cuaug uuuggu cg  acguu uacgaggguuauau   u
      -ua  --a     u      a  -u     u              aaa 

>ssc-mir-503 (-68.40)   [ssc-miR-503:22-44]

      - -----a       g     UA                 G   u gg g 
gccccg c      cucagcc ugccc  GCAGCGGGAACAGUACU CAG g  c a
|||||| |      ||||||| |||||  ||||||||||||||||| ||| |  | u
cggggc g      gggucgg acggg  cgucgucuuuguuaugg guc c  g c
      c cccuca       a     cc                 g   u au g 

>ssc-mir-146b (-41.10)   [ssc-miR-146b:21-41]

ga   u    -  -  u   u  G        A    A    Cu  ga  u 
  acu uggc ca cc ggc cU AGAACUGA UUCC UAGG  gu  gc c
  ||| |||| || || ||| || |||||||| |||| ||||  ||  ||  
  uga aucg gu gg ccg gg ucuugacu aagg aucc  ua  cg u
-c   u    u  c  c   u  -        c    -    cg  aa  a 

>ssc-mir-181a-1 (-35.30)   [ssc-miR-181a:23-46]

     ua  -     -  uc  u A   U      CU       A    g  au 
gaguu  ga gguug cu  ag g ACA UCAACG  GUCGGUG GUUu ga  u
|||||  || ||||| ||  || | ||| ||||||  ||||||| |||| ||  c
cucga  cu ccaac gg  uc c ugu aguugc  cagcuac caaa cu  a
     --  a     c  ua  c a   u      --       -    a  aa 

>ssc-mir-215 (-36.90)   [ssc-miR-215:20-40]

-ag   u           a A  A     -   U         -  gug 
   aga gguguacagga a UG CCUAU GAA UGACAGACa au   g
   ||| ||||||||||| | || ||||| ||| ||||||||| ||    
   ucu cuauaugucuu u ac ggaug cuu acugucugu ua   c
ucg   -           a a  c     u   u         c  aau 

>ssc-mir-30a (-55.20)   [ssc-miR-30a-5p:21-42] [ssc-miR-30a-3p:62-83]

   --c    ----a    ga                UC           -  gagg 
ucc   ugcg     cagu  gcggcUGUAAACAUCC  GACUGGAAGcu gu    c
|||   ||||     ||||  ||||||||||||||||  ||||||||||| ||     
agg   acgc     guca  cgcCGACGUUUGUAGG  CUGACUUUCgg ca    u
   acu    ccucc    gc                --           g  gaag 

>bfl-mir-135b-1 (-32.80)   [bfl-miR-135b:9-29]

ccg            UU    CUU      -   cu 
   uguccAAUGGCU  CAUC   UGUGAa ugu  g
   ||||||||||||  ||||   |||||| |||   
   acagguuauugg  guag   acacuu aca  a
aga            gg    -uc      g   cg 

>mmu-mir-683-2 (-43.60)   [mmu-miR-683:71-91]

u   --aa  c   - ug     c      gg  -c     uaaaagccaagcuuu 
 ggg    gu cag c  ggagg ugcagu  ac  caggc               u
 |||    || ||| |  ||||| ||||||  ||  |||||                
 ccc    ua guc g  cCUCC GUGUCG  UG  GUCCg               c
-   gagg  c   g gu     U      AA  UC     uaggugacgucacgu 

>cel-mir-258-2 (-24.60)   [cel-miR-258:6-26]

gcaauGG     A -   AA          -      uugaa uu   g 
       UUUUG G AGG  UCCUUUUaca uauuug     g  uuc c
       ||||| | |||  |||||||||| ||||||     |  |||  
       gaagc c ucc  aggaagaugu auaagc     u  aag u
--guuuu     a g   ga          c      uggug uu   c 

>hsv2-mir-H3 (-69.30)   [hsv2-miR-H3:59-80]

   ga -ga    g  -                   -         c  acg 
agc  g   cgcg cc ggcgcgcucucgaccgcgg uucccgagu gu   c
|||  |   |||| || ||||||||||||||||||| ||||||||| ||    
ucg  c   gcgc gg ccgcgcGAGGGUUGGCGUC GAGGGUUUa ca   a
   -g acg    g  g                   U         c  ggg 

>hsv2-mir-H4 (-44.20)   [hsv2-miR-H4-5p:10-30] [hsv2-miR-H4-3p:47-67]

        a      A  C    C     C  --   u 
ggggcggg GAGUUC CU GGCA GCAUG ac  gug a
|||||||| |||||| || |||| ||||| ||  |||  
cccugccc CUCAAG GA CCGU CGUGC ug  cgc a
        a      C  U    U     C  ac   c 

>hsv2-mir-H2 (-42.40)   [hsv2-miR-H2:44-65]

u         c  -   -   c      cu ug u 
 cggucgcgc ug ccc ggc cagacu  g  c u
 ||||||||| || ||| ||| ||||||  |  |  
 gccAGCGCG AC GGG CCG GUCUgg  u  g g
g         U  U   U   A      -c gu g 

>mdm-MIR482 (-93.30)   [mdm-miR482*:41-61] [mdm-miR482:95-116]

    a            gauu     u          u           -U        ACAa       a      uaa 
gaga gagggaaaggga    ggagc gcuggaaguu uaGGAAUGGGC  GUUUGGGA    ggaaauu ccacaa   u
|||| ||||||||||||    ||||| |||||||||| |||||||||||  ||||||||    ||||||| ||||||    
cucu uucccuuucccu    ccuug cgaccuuuag auCCUUACCCG  CGAACCCU    UCUuugg gguguu   u
    g            ----     u          u           CC        ----       -      cug 

>mtr-MIR159a (-80.40)   [mtr-miR159a:152-172]

------- gg                      uau    cuu    -u u      a   g     c      uc  u   cu     -  ucuu 
       g  guggagcuuccuuuaguccaaa   ggau   gcua  g ugauag gcu cuuag uauggg  cc caa  cuacc ca    g
       |  ||||||||||||||||||||||   ||||   ||||  | |||||| ||| ||||| ||||||  || |||  ||||| ||     
       c  cAUCUCGAGGGAAGUUAGGUUU   ucua   ugau  c acuauu cga ggauc auaccu  gg guu  gaugg gu    u
ucucguu ua                      cuu    auu    uu c      c   g     u      uc  u   uu     u  uucu 

>gma-MIR2119 (-46.16)   [gma-miR2119:96-116]

    u          u    uaauu         c   a    u           -       uagaaa 
auac ucauuuuuua acuu     uccucuaua cuc cuuu auuggagaaaa aagagaa      a
|||| |||||||||| ||||     ||||||||| ||| |||| ||||||||||| |||||||      u
ugug gguaaaagau ugaA     AGGGGAUGU GAG GAAA Uaacuuuuuuu uucucuu      a
    c          u    -----         U   G    C           c       uaggug 

>mtr-MIR2119 (-50.80)   [mtr-miR2119:94-114]

uuuauu           aaga      c                 aa    ag     -caa   gg 
      uuuuuuacacu    uacucc uacuuuccuuugauugg  auaa  agaga    aaa  u
      |||||||||||    |||||| |||||||||||||||||  ||||  |||||    |||   
      gaaaaaugugg    AUGAGG GUGGAGGGAAACUaacu  uauu  ucucu    uuu  a
--aaau           ---G      U                 -g    cu     uuaa   aa 

>pvu-MIR2118 (-58.90)   [pvu-miR2118:73-94]

-------------aa     u        g       a        -           -uaa     ug 
               gagcu gaggaagu augggag uggguggg uugguaaaaca    gagaa  a
               ||||| |||||||| ||||||| |||||||| |||||||||||    |||||  a
               cuugg uuccuuua uAUCCUU ACCCACCU AGCCGUUuugu    cucuu  u
ucucaccuuucuuuc     u        g       -        U           cuca     ua 

>pvu-MIR159a (-91.80)   [pvu-miR159a.2:107-127] [pvu-miR159a.1:153-173]

            ga       uu      cu    ----   ug   u     g     c      uc      uu     -  ucag 
guggagcuccuu  aguccaa  gaggau  uacu    ggg  gau gagcu cuuag uaugga  ccacag  cuacc ca    c
||||||||||||  |||||||  ||||||  ||||    |||  ||| ||||| ||||| ||||||  ||||||  ||||| ||    a
cAUCUCGAGGGA  UUAGGUU  uuccua  auga    ucc  cua UUCGA GGGUC AUACCU  gguguu  gaugg gu    u
            AG       Uc      cu    uauc   gu   C     G     U      UC      cu     u  uuug 

>pvu-MIR1514a (-69.41)   [pvu-miR1514a:65-86]

-          g ------    c  a     u  cu   ucc   ug  ug       ggcuu    -               A        -------------     ac 
 auugaagaac c      cuug cu ccuuc ca  gca   uuu  aa  gaaacag     uccu guuUUCAUUUUGAAA UAGGCAUU             Gcauu  a
 |||||||||| |      |||| || ||||| ||  |||   |||  ||  |||||||     |||| ||||||||||||||| ||||||||             |||||  u
 uaacuucuug g      gaau ga ggaag gu  ugu   aaa  uu  uuuuguc     agga caaaaguagaauuuu auccguaa             cguag  u
u          a cccuca    a  a     u  --   --c   gu  gu       -acau    a               -        ccuuaaccuucug     cu 

>pvu-MIR482 (-60.60)   [pvu-miR482*:34-55] [pvu-miR482:83-104]

    ucc    auu    ca      au ug           -U          C   -gu    ugg 
ggga   ggag   ggag  aucaga  u  ugGGAAUGGGC  GAUUGGGAAG Aau   gugc   u
||||   ||||   ||||  ||||||  |  |||||||||||  |||||||||| |||   ||||   g
uccu   ccuu   ucuu  uagucu  a  auCCUUACCCG  UUAACCCUUC uua   uacg   c
    -uu    ---    ag      cu gu           CC          U   auu    uaa 

>pvu-MIR2119 (-47.00)   [pvu-miR2119:128-148]

agcaaugguguuauuuuuauacuuuauuuucuaugcuuu                  uauu     uaaau        uu      c   gauu 
                                       uccucuacaacucucuuu    uugga     gaagugga  ucuacu uuu    g
                                       ||||||||||||||||||    |||||     ||||||||  |||||| |||     
                                       AGGGGAUGUUGAGGGAAA    aacuu     uuuuaucu  agguga aaa    g
--------------------------------------A                  --CU     ----u        uu      a   aaga 

>pvu-MIR166a (-174.90)   [pvu-miR166a:228-248]

aucaguuucuacuuucuaaucaucaacuucuucaaacacaucauaugaauauagcuaccuaggugcuguuuucuuuuccaacuuccucauaucuuguucauuccuugcaaaggugagguugagaggaauguugucuggcucgaggucauggaggaggagaguucucagauaaacucuuucacccaaaguuuccaauggaaauuuacccucuaacaccaaaauga      GACCA    UCA    CCc   ccaa     g  -a         --    -aa    -       u   --   ccccaugcuuguuuuugcaggaucagaauuuucaacucacuacccaucuucuuuuguuuuaccuguaaauaucuuuauaaaggccggugaaaauuauagggaaggcaacuucauaau 
                                                                                                                                                                                                                                uucUCG     GGCU   UUCC   cac    cuuuu cu  uuuucuuuc  ucgu   ucuu cauauuu gca  ugc                                                                                                                     u
                                                                                                                                                                                                                                ||||||     ||||   ||||   |||    ||||| ||  |||||||||  ||||   |||| ||||||| |||  |||                                                                                                                      
                                                                                                                                                                                                                                aagagc     uuga   aagg   gug    gaaga ga  agaagaaag  agua   agaa guguaaa cgu  acg                                                                                                                     u
------------------------------------------------------------------------------------------------------------------------------------------------------------------uucucagugucugagucuguguaucuuagggaucgaacgaucgaagaggacuaagagugaag      ---aa    --c    -uc   aaga     -  ag         ua    aug    a       u   au   aagagucguugaaagucgccgaucacucacguacggaaguugugagcagugacaguaaagugacuucauguaaguaagucuacaacuacuuuuacuaccguucggaaaaaggguuca 

>pvu-MIR319c (-195.56)   [pvu-miR319c:410-430]

-------------------------------------------------------------auuuuuuccauggucacucucauuacaaccugcuaguccuuuuucgucuuuacgguuuuccuuucuuuauaacucugcuugcuacucuugcaucucuucagcgcaggaaucgauaaaaacaugccagaauuaggguuucugguagccaugcuuuucaguuuuagcucuaaggaagaagggaaaaggauguacaugugcagaguucgacuacagcuuuagucacauugggaaggaaagagagu            c    c   --    u   uacaa    uu    ug aaaauuaaccacuaacucauucacacaauaguauucaguuagggugaug 
                                                                                                                                                                                                                                                                                                               gaaggagcuucc ucag cca  uuca gga     aaga  gggu  c                                                 c
                                                                                                                                                                                                                                                                                                               |||||||||||| |||| |||  |||| |||     ||||  ||||  |                                                  
                                                                                                                                                                                                                                                                                                               cUUCCUCGAGGG AGUC GGU  gagu ucu     uucu  ccca  g                                                 u
cuucacuguaucucgaaacacaucuuucauuaauguauuuaaguaaauaucuauacaucacuaguaaauuuucugauucgauuuguuuaaugacguacauacauugacaaguauacguugacaagucuacaaaaacgacuuagaacacgucaacaccgucucucaccuaugaauguuucucgaucuucugcuauacauuguagucgaugucacauuaccggaguggaaaaaacacgauucguauauaucuaauucgaaucuguaccgguagacucucuacuuauguuuaccuccguugucuuu            A    A   Uc    c   -----    --    gu uguuauacauacguagugaaguaaguguguuaguauaauaucguuuuuc 

>pvu-MIR399a (-51.70)   [pvu-miR399a:89-109]

-ugcacaagauauuauagucaauaa   a  c g  a   g          gu   c  ga     -    ac    ucaugaaauaucuUGCCAAAGGAGAGUUGCCCUGu 
                         gca ac a uu uag gcuucucuuu  ugg ag  aauga caug  cacu                                   u
                         ||| || | || ||| ||||||||||  ||| ||  ||||| ||||  ||||                                   g
                         cgu ug u aa guc cgaagagaag  acc uc  uuacu guau  guga                                   c
cuacuucaguaaacaaacuagggaa   a  a g  -   a          uu   -  ac     a    ac    cuuaucguaucuucuaauguauaauucgauuucgu 

>vun-MIR1507b (-44.17)   [vun-miR1507b:78-98]

  a ua    g    -                  a     aaacgccuuuc       
gu g  uuug caga gguguauggagugagaga gggaa           ccgauc 
|| |  |||| |||| |||||||||||||||||| |||||           ||||| u
cg u  aagc GUCU CUACAUACCUUACUCUcu ccuuu           ggcuac 
  a gc    a    G                  -     ----cuuucuu       

>osa-MIR2120 (-35.00)   [osa-miR2120:49-72]

--                   ---a    gaua    u 
  aacaaccgggacuaaagau    ucuu    ucuu a
  |||||||||||||||||||    ||||    |||| a
  UUGUUGGCCCUGAUUUCUA    agaa    aggg c
uC                   GAAA    -aug    c 

>osa-MIR2121a (-75.50)   [osa-miR2121a:96-119]

--        cu                     aacacagccgcggccuuaggcuguguu 
  gugcuaau  aucgcuccguuuuccgugcgg                           c
  ||||||||  |||||||||||||||||||||                            
  CGCGAUUA  UGGCGAGGCAAAAggcacguc                           c
uG        CC                     cccuuuacucaaggguagaccaucuac 

>osa-MIR2121b (-68.70)   [osa-miR2121b:153-176]

--        aag       a    g      u  ------     uu   gaaccuccugucuaaccaacccaaaauuggguuggccacgu 
  gcgcuaau   ucguuuc uuuu cgugcg ga      gaguu  caa                                         a
  ||||||||   ||||||| |||| |||||| ||      |||||  |||                                          
  CGCGAUUA   GGCGAGG AAAA gcacgc cu      cucaa  guu                                         u
uG        CCU       C    g      -  cccuua     gg   gcguguauuuacuuacguagaguguguguguaggaaccuga 

>osa-MIR2122 (-113.56)   [osa-miR2122:1-22]

UUUC      A   -             a         a                         -cacguca  u           ucgugccaccgugaauagga 
    AAAAAU ACC UUUUGUUCagcgc aaaucguau gcgcugaacuuagacaccucagcgc        ac ggcgcugaaug                    g
    |||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||        || |||||||||||                    g
    uuuuua ugg aaaacaagucgcg uuuaguaua cgugauuugaaucuguggagucgcg        ug cugcgacuuac                    c
aaau      a   u             g         c                         auuuaucg  -           auguaaccgugcgacugagu 

>osa-MIR2123a (-71.80)   [osa-miR2123a:163-184]

--                      g            a        auucaaaaauuuuaaguaauuauuuauucuuuucauaucauuugau 
  uuugacaccguugacuuuuuag acguguuugacc uucgucuu                                              u
  |||||||||||||||||||||| |||||||||||| ||||||||                                              c
  AAACUGUGGCAACUGAAAAAUc uguacagacugg aagcagaa                                              c
aC                      a            c        cacuuuauacauuuugaucuacacauguacuuuuauguaaauuguu 

>osa-MIR2123b (-71.70)   [osa-miR2123b:163-184]

--                      u  a   c                ---     ---au    aacuagauguguacaugaaaauacauuuaa 
  uuugacaccguugacuuuuuag ac ugu ugaccguucgucuugu   gaaau     guaa                              c
  |||||||||||||||||||||| || ||| ||||||||||||||||   |||||     ||||                              a
  AAACUGUGGCAACUGAAAAAUc ug aca acugguaagcagaaua   uuuua     cauu                              a
aC                      c  c   a                agu     aaauu    aauaaauaagaaaaguauaguaaacuaagg 

>osa-MIR2123c (-35.90)   [osa-miR2123c:62-83]

--                      c  a     ---------   c 
  uuugacacuguugacuuuuuag ac uguuu         gac a
  |||||||||||||||||||||| || |||||         ||| u
  AAACUGUGGCAACUGAAAAAUc ug acaaa         cug u
aC                      a  c     aaaauuauu   c 

>osa-MIR2124a (-86.70)   [osa-miR2124a:225-248]

--    u          ca     c         -  --aaa      c   u gc       --  a       c           cuu             ua  a g   u ac     gg   u 
  augu uggacacaug  ugaag auuaaaugu ga     aauaaa caa u  acagauu  gc uguaaau gcgagacgaau   uugagccuaauua  cc u auu g  aaugu  ugc a
  |||| ||||||||||  ||||| ||||||||| ||     |||||| ||| |  |||||||  || ||||||| |||||||||||   |||||||||||||  || | ||| |  |||||  |||  
  UAUA GCCUGUGUGU  AUUUC uaauuugca cu     uuguuu guu a  ugucuaa  cg acauuug cgcucuguuua   aauucggauuaau  gg a uaa c  uuaua  aug c
uU    U          AA     A         u  gauua      u   u -a       gg  g       a           aau             ua  c g   u gu     -a   a 

>osa-MIR2124b (-75.90)   [osa-miR2124b:215-238]

auauuuggacacaugcauggaguauuaaauauagacgaaaaaauaacuaauuacacaga    g            g  a   cuu            gcgccaugauuugacaauauggugc 
                                                           uugc uguaaauugcga ac aau   uuaagucuaauu                         u
                                                           |||| |||||||||||| || |||   ||||||||||||                         a
                                                           ggcg acauuuggcgcu ug uua   aauucggauuaa                         c
----------cUUAUAUGCCUGUGUGUAAAUUUCAuaauuugcaucagauuauuacuua    g            g  c   aau            uuaggccauaaucguuuacaaauga 

>osa-MIR2124c (-67.80)   [osa-miR2124c:224-247]

-----auguucggauauauguauggacuauuaaauauagaaaaaaaaccaauuac    uuua   --gu            a   cuu             cgccaugauuugacaacguggugg 
                                                       acag    cgu    aaauugcgagac aau   uuaagucuaauug                        u
                                                       ||||    |||    |||||||||||| |||   |||||||||||||                        a
                                                       uguc    gcg    uuugaugcucug uua   aauucggauuaau                        c
cUUAUAUGCCUGUGUGUAAAUUUCAuaauuugcaacagauuauuguuuuauuuaa    uaag   gucu            c   aau             uagauaguaaucguuuauaaauga 

>osa-MIR2124d (-76.20)   [osa-miR2124d:226-249]

---auguuuuggcauauacauagaguauuaaauauagggaaaaaaaaccaauuuc     --    gu u          ag    cuu            gcgcuaugauuugacaauguggugc 
                                                       acaga  cugc  g aaauugcgag  gaau   uuaagccuaauu                         u
                                                       |||||  ||||  | ||||||||||  ||||   ||||||||||||                         a
                                                       ugucu  ggcg  c uuugacgcuc  cuua   aauucggauuaa                         c
cUUAUAUGCCUGUGUGUAAAUUUCAuaauuuguaucagauuauuguuuuauuuaa     aa    gu u          ag    aau            uuaagcaguaaucguuuauaaauga 

>osa-MIR2124e (-78.60)   [osa-miR2124e:223-246]

--    u          ca             --------    aaa     c       caaa    g                   cuu   a c      gcuccaugauuugacaauguggugc 
  augu uggacacaug  uggaguauuaaau        auaa   aaaac aauuaca    uugc uguaaauugcgagacgaau   uua g cuaauu                         u
  |||| ||||||||||  |||||||||||||        ||||   ||||| |||||||    |||| |||||||||||||||||||   ||| | ||||||                         a
  UAUA GCCUGUGUGU  AUUUCAuaauuug        uauu   uuuug uuaaugu    ggcg auauuugacgcucugcuua   aau c gauuaa                         c
cU    U          AA             caucugau    --g     u       auaa    g                   aau   a a      uuagacaguaaucguuuacaaauaa 

>osa-MIR2124f (-62.80)   [osa-miR2124f:228-251]

------   uuuga      gca               u a gaaaa      uacuu      u     ---------         c         c u    cu      gcgccaugauuugauaauauggugu 
      acg     acacau   uggaguauuaaaugu g c     aauaac     aaacag uugca         uguaaauug gagaugaau u uuaa  cuaauu                         u
      |||     ||||||   ||||||||||||||| | |     ||||||     |||||| |||||         ||||||||| ||||||||| | ||||  ||||||                         a
      UGC     UGUGUA   AUUUCAuaauuugca c g     uuauug     uuuguu aacgu         acauuuggu cucugcuua a aauu  gauuaa                         c
cUUAUA   --CUG      --A               u a ----a      ----u      u     ccuaggcgg         u         a c    cc      uuagauaguaaucguuuucaaauga 

>osa-MIR2124g (-63.14)   [osa-miR2124g:227-250]

----    uu       a   --g           auaaucg   -a      -u   uacac   ----    g            c      cuu     ca      cuccaug  cu ac     ga   u 
    augc  ggacaua cau   gaguauuaaau       aga  aauaac  aau     aga    uugc uguaaauugcga acgaau   uuaag  uaauug       au  g  aaugu  ugc a
    ||||  ||||||| |||   |||||||||||       |||  ||||||  |||     |||    |||| |||||||||||| ||||||   |||||  ||||||       ||  |  |||||  |||  
    UAUG  CCUGUGU GUA   UUCAuaauuua       ucu  uuauug  uug     ucu    ggcg acauuuggcgcu ugcuua   aauuc  auuaau       ua  c  uuaca  aug c
cUUA    --       -   AAU           -----ca   ga      uu   uuuaa   cuua    g            c      aau     ug      uaagcaa  au gu     -a   a 

>osa-MIR2124i (-71.30)   [osa-miR2124i:226-249]

--    uua         a  u          ---aua   aaaa    au       ua    g --g            aa     cuu        a    c     gauc      -   gg   u 
  augu   gacauaugu ug aguauuaaau      uga    gaaa  aauuaca  gauu c   uguaaauuguga  cgaau   uuaagccu auug uccau    ugacaa ugu  ugc a
  ||||   ||||||||| || ||||||||||      |||    ||||  |||||||  |||| |   ||||||||||||  |||||   |||||||| |||| |||||    |||||| |||  |||  
  UAUA   CUGUGUGUA AU UCAuaauuug      auu    cuuu  uuaaugu  cuaa g   acauuugaugcu  gcuua   aauucgga uaau aggua    auuguu aca  aug c
cU    UGC         A  U          cauccg   guug    gu       --    g uga            cc     aau        c    u     -aua      u   -a   a 

>osa-MIR2125 (-226.80)   [osa-miR2125:1-24]

U                    C      a                                                                  c                           ca        uaug uuc  uuguu       caa        
 UUUUCUCUAUAGACUAUCUC AGguua uagauagcuuugcucucucucuucauuuaaucucuuccaaguaggaaaauaugcugacauggaucu uuguagagagucuauagauaaccauug  ggugcccu    c   cg     uggaaau   ggugacu 
 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||    |   ||     |||||||   |||||| a
 aaaagagauaucugauagag uuuaau aucuaucgaaacgagagagagaaguaaauuagagaagguucaucuuuuuauacgacuguaccuaga aacaucucucggaugucuauugguaac  ccacggga    g   gc     accuuug   uuacugc 
a                    u      c                                                                  a                           ac        -uua uuc  ----u       --c        

>osa-MIR2124h (-92.59)   [osa-miR2124h:248-271]

gucaa   a     u          ca                --a  aa     cuaauuac       g --g       ua     ug   cuu             -c      auuugacaauguggugcuacaau 
     auc aaugu uggacacaug  uggaguauuaaauaua   ua  aauaa        acagauu u   uguaaau  cgaga  aau   uuaagccuaauug  uucuug                       g
     ||| ||||| ||||||||||  ||||||||||||||||   ||  |||||        ||||||| |   |||||||  |||||  |||   |||||||||||||  ||||||                       u
     uag UUAUA GCCUGUGUGU  AUUUCAuaauuuguau   au  uuauu        ugucuaa g   acauuug  gcucu  uua   aauucggauuaau  gggagc                       g
-----   c     U          AA                cug  ca     uuguuuaa       g uga       gc     gu   aau             ua      aaucguauacaaaugacaucgug 

>gma-MIR167e (-47.40)   [gma-miR167e:19-39]

      -a  ----     c  u           G        Uaa   c  u ac 
ucaugc  cc    acuac ag UGAAGCUGCCA CAUGAUCU   cuu cc c  u
||||||  ||    ||||| || ||||||||||| ||||||||   ||| || |  u
aguacg  gg    ugaug uc acuuugacggu guacuaga   gaa gg g  g
      cc  ucgu     a  c           -        cua   a  u cc 

>gma-MIR167f (-48.50)   [gma-miR167f:19-39]

      -a  ----     c  u           G        Uaa   c  u  c 
ucaugc  cc    acuac ag UGAAGCUGCCA CAUGAUCU   cuu cc ca u
||||||  ||    ||||| || ||||||||||| ||||||||   ||| || || u
aguacg  gg    ugaug uc acuuugacggu guacuaga   gaa gg gu g
      cc  uugu     a  c           -        cua   a  u  c 

>gma-MIR172c (-64.70)   [gma-miR172c:114-134]

aaauc     cugu    c g  g                a  -   uuu      au     -ug    ag ug  u 
     aguca    uugc g ug agcaucaucaagauuc ca agc   aggggc  uaauu   uuug  g  gu c
     |||||    |||| | || |||||||||||||||| || |||   ||||||  |||||   ||||  |  || c
     ucagu    aacg c AC UCGUAGUAGUUCUAAG gu ucg   uucccg  auuaa   aaac  c  ua u
-auaa     aaau    a G  G                G  a   -uu      --     cca    cu gu  u 

>gma-MIR172d (-66.90)   [gma-miR172d:111-134]

aaaac     cug     aga  g                a  agcu    -      --  ug      - ug  c 
     agucg   auugc   ug agcaucaucaagauuc ca    ucag ggguuu  uu  uuuggg g  gu c
     |||||   |||||   || |||||||||||||||| ||    |||| ||||||  ||  |||||| |  || c
     ucagc   uaacG   AC UCGUAGUAGUUCUAAG gu    aguu cccgaa  aa  aaaccc c  ua u
-acaa     aaa     ACG  G                G  --au    u      uu  gu      u gu  u 

>gma-MIR172e (-64.70)   [gma-miR172e:114-137]

aaaac     cugu    c g  g                a  -   uuu       au     u     a   g ucc 
     aguca    uugc g ug agcaucaucaagauuc ca agc   agggggc  uaauu guuug ggu g   c
     |||||    |||| | || |||||||||||||||| || |||   |||||||  ||||| ||||| ||| |    
     ucagu    aacG C AC UCGUAGUAGUUCUAAG gu ucg   uuucccg  auuaa caaac cua u   u
-auaa     aaau    A G  G                G  a   --u       --     c     -   g uau 

>gma-MIR1509b (-40.40)   [gma-miR1509b:11-31]

cu    c                U      U  gugu         aaag   cuuc 
  gcau uuuUUAAUCAAGGAAA CACGGU ga    gaaggagag    ugg    a
  |||| |||||||||||||||| |||||| ||    |||||||||    |||     
  ugua agaaauugguuccuuu guguca cu    cuuccuuuu    gcc    g
cg    u                -      c  ----         --gg   uuua 

>gga-mir-2126 (-80.90)   [gga-miR-2126:41-58]

-    -c      cc  ca    gugg         g   ugA    C  -   A     Acggag           - c 
 gggg  gggcug  gg  ggau    gccgggacg agc   GCGG GC GGU GGAGC      cggagguggug c a
 ||||  ||||||  ||  ||||    ||||||||| |||   |||| || ||| |||||      ||||||||||| |  
 cccc  cccgac  uc  ccua    ugguccugc ucg   uguc cg cca ccuug      gucuccgccau g c
c    ac      --  --    ---a         -   ---    -  a   a     gaagga           u g 

>gga-mir-2127 (-72.90)   [gga-miR-2127:69-89]

          ccgg       -  g          uug   g         a  a 
ccuccuuguc    cucgucc cc cuuccucccu   ucu cggccgccg ac g
||||||||||    ||||||| || ||||||||||   ||| ||||||||| || g
ggagggacgg    gagcGGG GG GAGGGAGGGG   AGG GCcggcggu ug c
          ---a       C  -          ---   -         g  c 

>gga-mir-2128 (-39.70)   [gga-miR-2128:42-61]

u       -u     -   g      -   cc 
 gugggga  gggcg cac gcacgg ggu  g
 |||||||  ||||| ||| |||||| |||  u
 cgCCCCU  UCUGC GUG CGUgcc cca  c
a       UC     A   A      g   cc 

>gga-mir-2129 (-38.90)   [gga-miR-2129:50-72]

-  ga     g ag  gg      a    gaua    ag       
 gg  aggcu c  ug  acaagg ccag    cugc  ugcugu 
 ||  ||||| |  ||  |||||| ||||    ||||  ||||| g
 cc  uccga g  GC  UGUUUC GGUC    GACG  ACgaca 
c  ac     - gA  AU      -    --AG    --       

>gga-mir-2130 (-33.90)   [gga-miR-2130:43-65]

    c     -  a   aac      ug   au 
gucc ugcag gc cca   gggggc  agc  c
|||| ||||| || |||   ||||||  |||  g
CAGG ACGUC CG GGU   CCCUcg  ucg  g
    A     U  A   -GA      --   ac 

>gga-mir-2131 (-40.40)   [gga-miR-2131:14-37]

   c ug        G      UGC    A       guuu   au 
ucu g  gcuuccAU CAGAAG   ACGG AACAGCU    gcu  c
||| |  |||||||| ||||||   |||| |||||||    |||  g
agg c  cggaggua gucuuc   uguc uugucgg    uga  a
   u gu        -      --u    a       ---u   aa 

>mmu-mir-2132 (-42.89)   [mmu-miR-2132:121-139]

     aaa        agg   uac    gcuac      -a ug  uaaca    -uu  aa      a   --u     auacaacgaaaua 
guuuc   guuuugau   uuc   gcau     uagaaa  g  uu     guca   cc  gcugug guc   gugug             c
|||||   ||||||||   |||   ||||     ||||||  |  ||     ||||   ||  |||||| |||   |||||              
uaaag   cgaaacug   aag   cgug     gucuuu  u  AG     CAGU   GG  CGGcgc cgg   cauac             u
     aag        --a   ucu    -accc      ag GU  ---CG    UGU  -G      c   ugu     gcaacauagaauu 

>mmu-mir-2133-1 (-38.40)   [mmu-miR-2133:11-32]

u      -       -C    ----    C AAGC UU        a 
 uagcug aguGUCC  GCGG    GGCC G    G  uacuuuga a
 |||||| |||||||  ||||    |||| |    |  |||||||| a
 aucgac ucauagg  cgcc    ccgg c    c  gugagauu a
g      g       uc    gagc    a gaaa uu        a 

>mmu-mir-2133-2 (-40.20)   [mmu-miR-2133:13-34]

         -a      -C    ----    C AAGC UU        a 
ucuuagcug  guGUCC  GCGG    GGCC G    G  uacuuuga a
|||||||||  ||||||  ||||    |||| |    |  |||||||| a
aggaucgac  cauagg  cgcc    ccgg c    c  gugagauu a
         gc      uc    gagc    a gaaa uu        a 

>mmu-mir-2134-1 (-25.10)   [mmu-miR-2134:4-22]

guu  CU    AAAC    U      gga 
   GU  UGGG    GGGG GCggcc   a
   ||  ||||    |||| ||||||    
   ca  gccc    cucc cgccgg   a
---  cu    -gcu    -      ggg 

>mmu-mir-2134-2 (-23.70)   [mmu-miR-2134:5-23]

guu   -C    -  AAC    U      gga 
   cGU  UUGG GA   GGGG GCggcc   a
   |||  |||| ||   |||| ||||||    
   gca  gacc cu   cucc cgccgg   a
---   cu    g  ---    -      ggg 

>mmu-mir-2134-3 (-36.40)   [mmu-miR-2134:23-41]

gaucc   gcgg  a    uu   -  -    AAA    GU -     gga 
     ggu    ag gccg  gGU CU UGGG   CGGG  G Cggcc   a
     |||    || ||||  ||| || ||||   ||||  | |||||    
     cca    uc cggu  cca gg gccc   gcuc  c gccgg   a
----a   --aa  g    --   a  u    ---    ug c     ggg 

>mmu-mir-2134-4 (-27.60)   [mmu-miR-2134:5-23]

guu   CU    AAAC    U      gga 
   cGU  UGGG    GGGG GCggcc   a
   |||  ||||    |||| ||||||    
   gca  gccc    cucc cgccgg   a
---   cu    -gcu    -      ggg 

>mmu-mir-2135-1 (-27.73)   [mmu-miR-2135:82-101]

ccucc  -a     --         ag    cg uc     cuu  c   acguacg 
     ga  guuuc  ccucaggau  cugg  c  ucgcu   uu ccg       c
     ||  |||||  |||||||||  ||||  |  |||||   || |||       a
     cu  CAAAG  GGGGUUCUG  GAuu  g  agcga   aa ggc       g
caacu  ag     CC         GA    -a ua     ---  u   cuauuuu 

>mmu-mir-2135-4 (-29.20)   [mmu-miR-2135:81-100]

cucc  -a     --         ag   gcguucucgcucuuuucccgacgua 
    ga  guuuc  ccucaggau  cug                         c
    ||  |||||  |||||||||  |||                         g
    cu  CAAAG  GGGGUUCUG  GAu                         c
-acu  ag     CC         GA   uaguaagcgaaauggccuauuuuga 

>mmu-mir-2135-5 (-27.30)   [mmu-miR-2135:76-95]

----gaa     --         ag   gcgcucucgcucuuucccgacgcac 
       guuuc  ccucaggau  cug                         g
       |||||  |||||||||  |||                          
       CAAAG  GGGGUUCUG  GAu                         c
acucuag     CC         GA   uaguaagcgaaaugaccuauuuuga 

>mmu-mir-2135-2 (-27.73)   [mmu-miR-2135:82-101]

ccucc  -a     --         ag    cg uc     cuu  c   acguacg 
     ga  guuuc  ccucaggau  cugg  c  ucgcu   uu ccg       c
     ||  |||||  |||||||||  ||||  |  |||||   || |||       a
     cu  CAAAG  GGGGUUCUG  GAuu  g  agcga   aa ggc       g
caacu  ag     CC         GA    -a ua     ---  u   cuauuuu 

>mmu-mir-2135-3 (-27.73)   [mmu-miR-2135:82-101]

ccucc  -a     --         ag    cg uc     cuu  c   acguacg 
     ga  guuuc  ccucaggau  cugg  c  ucgcu   uu ccg       c
     ||  |||||  |||||||||  ||||  |  |||||   || |||       a
     cu  CAAAG  GGGGUUCUG  GAuu  g  agcga   aa ggc       g
caacu  ag     CC         GA    -a ua     ---  u   cuauuuu 

>mmu-mir-2136 (-22.70)   [mmu-miR-2136:51-71]

---      auc       g g    --    -ga  uuu 
   ccgcgu   cagucag a ucag  uuag   ag   u
   ||||||   ||||||| | ||||  ||||   ||    
   gGUGUA   GUCAGUU U GGUC  aauu   uc   a
ggu      -GA       G G    uu    aag  uga 

>mmu-mir-2137 (-26.00)   [mmu-miR-2137:35-55]

gua   uac   --       cu  -        c 
   gua   cuc  cuuccug  gc cuuguugg u
   |||   |||  |||||||  || ||||||||  
   cgu   gag  GAGGGAC  CG GGGCGGCC u
---   uac   au       CC  A        G 

>mmu-mir-2138 (-34.40)   [mmu-miR-2138:11-32]

aa      ccAA    AC     -U  -   AA         aac 
  ccacag    GGGA  GGGCU  GG CGG  Ucagcgggg   g
  ||||||    ||||  |||||  || |||  |||||||||    
  gguguc    cucu  ucuga  uc guu  aguuguccc   a
cc      ----    ga     uc  a   cg         aga 

>mmu-mir-2139 (-43.50)   [mmu-miR-2139:67-90]

ag   ga    agg       cu   auuuggacau        --c     ag 
  aag  gcag   gccagga  ggc          gcagcugc   cagca  g
  |||  ||||   |||||||  |||          ||||||||   |||||   
  uuc  CGUC   UGGUCCU  UCG          CGUCGAcg   gucgu  u
--   gg    -AA       CG   ----------        ccu     gg 

>mmu-mir-2140 (-11.20)   [mmu-miR-2140:6-24]

uccacAGG      --     GUGG     g 
        UGCAGA  UCUUG    Uagua c
        ||||||  |||||    ||||| a
        acguuu  agagc    auuau a
--------      ca     --aa     a 

>mmu-mir-2141 (-30.20)   [mmu-miR-2141:6-24]

aagguA     U        ----A     caca   auaa       a 
      GGAGG GUCAGAAA     GUUgc    ggg    uuggcua u
      ||||| ||||||||     |||||    |||    |||||||  
      uuucc uaguuuuu     caacg    ccc    aaccggu g
----ag     -        cgaug     -aua   -gug       g 

>mmu-mir-2145-1 (-34.10)   [mmu-miR-2145:61-79]

aau         a  -cau    -c     aca      aucc a    a 
   caugucuau gu    acca  ccuga   ugcuug    c ucug u
   ||||||||| ||    ||||  |||||   ||||||    | ||||  
   gugcagaua cg    UGGU  GGGCU   ACGAgc    g agac c
--g         -  uaaU    CC     GGG      ---c a    u 

>mmu-mir-2145-2 (-58.56)   [mmu-miR-2145:14-32]

aucu      -cuaAGCA         - U   U  -ca      uggg            --gc       a  gcaa 
    cggaag        GGGUCGGGC C GGU ag   cuugga    agaaacguugag    gggcuag gu    u
    ||||||        ||||||||| | ||| ||   ||||||    ||||||||||||    ||||||| ||     
    gccuuc        cucaguccg g uca uc   gaaccu    ucuuugugauuc    cccgguc ca    u
---g      uuccuuua         u u   c  cuc      ugag            guua       a  accc 

>mmu-mir-2146 (-14.30)   [mmu-miR-2146:3-22]

aaG   A  AG GU --      -G   a 
   UGG GA  G  U  CCAUGU  aac a
   ||| ||  |  |  ||||||  |||  
   acc cu  c  a  gguaca  uug c
--a   -  ga ug cu      ag   a 

>sme-mir-10a (-27.50)   [sme-miR-10a-5p:21-43] [sme-miR-10a-3p:52-72]

--uaauuu     c         -A     U    C      A  Ug 
        guuuc uugauauaA  CCCUG AGAU CGAGUU GA  g
        ||||| |||||||||  ||||| |||| |||||| ||  u
        uagag aauuauaUU  GGGGC UCUA GCUUAA cu  u
ucuucuau     u         AA     -    A      C  uu 

>sme-mir-2148 (-20.80)   [sme-miR-2148:21-41] [sme-miR-2148*:54-76]

- u    -aacca     -uc         C     U  UGAU     au 
 g aagu      guuua   agAGAAAUU UGUGG CU    Uguaa  g
 | ||||      |||||   ||||||||| ||||| ||    |||||   
 c uuca      caaau   UUUCUUUAA ACACC GG    AUAuu  a
a -    aguuug     uau         A     C  --UC     au 

>sme-let-7d (-30.60)   [sme-let-7d:21-42]

---cuuccua  u      uac                         uuu 
          ua ucauuu   uAGAGGUAGUGAUUCAAAAAGUUaa   a
          || ||||||   |||||||||||||||||||||||||   a
          gu aguaaa   guuucuauuauuaaguuuuucaguu   c
acuacagaaa  u      -ua                         uua 

>sme-mir-753b (-32.20)   [sme-miR-753b-5p:21-40] [sme-miR-753b-3p:49-71]

--uuuuuau    cauau      -        U           u 
         aaag     uuuaAG GCUUGAAU GUGAUCUCAua a
         ||||     |||||| |||||||| |||||||||||  
         uuuc     aaAUUC CGAACUUG UACUAGAGUau u
guuacuacu    auaau      U        U           u 

>sme-mir-61b (-31.80)   [sme-miR-61b-5p:20-41] [sme-miR-61b-3p:54-76]

----caaa    cg   ac  a     UC   -U        A       g 
        gcgg  auu  ac gAAGA  GUG  CGUUCUAG UUAcaug a
        ||||  |||  || |||||  |||  |||||||| |||||||  
        cgcc  uaa  ug UUUCU  CAC  GUAAGAUC AGUguau u
ucuacuag    --   ga  a     UC   UU        -       a 

>sme-mir-87c (-34.50)   [sme-miR-87c*:20-40] [sme-miR-87c:58-79]

----guucuc   u    uc c              GG  CC  gc     c 
          ggc cgug  g aGUCAAUUGAUAAU  GC  CA  cauuc a
          ||| ||||  | ||||||||||||||  ||  ||  ||||| g
          ccg guac  u UCAGUUAACUAUUA  CG  GU  guaag g
ucuacuguua   -    cu -              AA  -A  -A     c 

>sme-mir-2149 (-29.50)   [sme-miR-2149-5p:21-41] [sme-miR-2149-3p:60-82]

-gca      c  -a      c  C     -    A          ---a     
    gaagau aa  ugagua CG CAAUG ACAA CUGUUGAUga    gacu 
    |||||| ||  |||||| || ||||| |||| ||||||||||    ||| u
    cuuuug uu  auuuaU GC GUUAC UGUU GACGACUAuu    cugu 
gcua      c  cc      U  A     C    -          aaca     

>sme-mir-2147a (-33.10)   [sme-miR-2147a:21-39]

---ucuucu     ugc     - C    G       C    Cau  cuaa 
         uugga   caacg g GGAA ACUCGCA GUGA   ug    u
         |||||   ||||| | |||| ||||||| ||||   ||    u
         aaccu   guugc c ccuu ugagcgu cacu   ac    u
acuacucuu     -ua     g -    g       -    -uu  cuuu 

>sme-mir-2150 (-45.60)   [sme-miR-2150:21-41]

--------ucaaa    acuuc  uauuC                    cagcg     gc  u       a 
             ucgg     uc     GGUUACGUGAUUAUUAGGGG     gcuuc  ug cugguga c
             ||||     ||     ||||||||||||||||||||     |||||  || |||||||  
             agcc     ag     ccaguguacugaugauuccu     ugaag  ac gaucacu u
cuucuuuaacgua    -----  -uacu                    -----     -a  -       g 

>sme-mir-2151 (-29.70)   [sme-miR-2151*:20-44] [sme-miR-2151:49-71]

u   --ua      cu  uuaCA         A    G      A 
 gcu    agagaa  cu     GAUCAUGUU AGUG AAUUUG U
 |||    ||||||  ||     ||||||||| |||| ||||||  
 cga    ucucuu  ga     CUGGUAUAA UCAC UUAGac a
a   caac      uc  uUAGA         C    G      a 

>sme-mir-2152 (-21.60)   [sme-miR-2152:21-43]

--cuuauu    aacu   aa  GG     A          CU 
        cuca    uua  uG  UUCGA GUAUGUCUCU  U
        ||||    |||  ||  ||||| ||||||||||  U
        gagu    agu  gc  aagcu uauauagagg  a
uuuuuacc    gauc   aa  au     a          uu 

>sme-mir-2153 (-25.80)   [sme-miR-2153:23-44]

uaaauuacggau  ug  --u       -CAUA      U     CUucua   --a     au 
            uu  au   aggUAGG     GUCUGU GGUUA      uga   auuga  u
            ||  ||   |||||||     |||||| |||||      |||   |||||   
            aa  ua   uccaucc     caggua ccagu      acu   uaacu  u
gcuuuauaaagu  gu  uuu       cagcg      -     --uccc   aaa     ag 

>sme-mir-87d (-28.50)   [sme-miR-87d*:21-44] [sme-miR-87d:63-84]

--uuacauu          uau         U        -    ---        
         guuuuagaau   AAUGUCUUA AUUUUGCU AUUA   UCauugu 
         ||||||||||   ||||||||| |||||||| ||||   |||||| u
         uaaaguuuua   UUACAGAAU UGAAACGA UGgu   aguaacu 
uccuucuuu          uaC         U        G    aaa        

>sme-mir-754b-1 (-24.20)   [sme-miR-754b:21-40] [sme-miR-754b*:54-74]

--guuuaucauc    - a c          GG    UU C      u 
            cacc c g auGUUGCUUG  GGUA  A UAuauu a
            |||| | | ||||||||||  ||||  | ||||||  
            gugg g c UAUAACGAAC  CUAU  U Auauaa u
ucaacuuauaaa    a a -          UA    UU A      u 

>sme-mir-754c-1 (-35.00)   [sme-miR-754c:21-40] [sme-miR-754c-1*:55-76]

--auuuguca      - a c           -    UU        u 
          uccacc c g auGUUGCUUGG GGUA  ACUAUauu a
          |||||| | | ||||||||||| ||||  ||||||||  
          aggugg G C UAUAACGAACU CUAU  Ugauauaa u
acaacuuaua      a G -           U    UU        u 

>sme-mir-124d (-34.00)   [sme-miR-124d*:20-42] [sme-miR-124d:54-74]

------uu   auau          AA       AA   A         a a 
        gga    guuuuaauaa  CAUUUAC  GCG GCCUUAAUu g a
        |||    ||||||||||  |||||||  ||| ||||||||| |  
        ccu    uaaaguuguU  GUGAAUG  CGC CGGAAUuaa c u
ucuacuau   ----          GG       -G   A         - u 

>sme-mir-124e (-22.40)   [sme-miR-124e*:20-40] [sme-miR-124e:53-73]

-----uuc      uu     ac  C     U    U GA         u 
        aauaaa  auucu  uG CAUUC CAGU G  GUCUUgaua g
        ||||||  |||||  || ||||| |||| |  ||||||||| a
        uuauuu  uaagg  AC GUAAG GUCG C  CGGAAUuau u
ucuucucu      --     -a  C     U    - -A         c 

>sme-mir-8b (-30.70)   [sme-miR-8b*:21-43] [sme-miR-8b:56-78]

-ugcauuc         a  -uGC                AG      a 
        auucuaaua uu    UUCUUACUUGAUGGUA  AGAcag u
        ||||||||| ||    ||||||||||||||||  ||||||  
        uaagauuau ag    AAGAAUGGACUGUCAU  Uuuguu u
gcuucuau         c  UCAU                AA      u 

>sme-mir-1993 (-28.30)   [sme-miR-1993*:20-43] [sme-miR-1993:62-81]

---uuaaccu  g   u      G      C          AA     guaca 
          uc aua guaauU AUGAAU AACAGUAUAA  ACGga     a
          || ||| |||||| |||||| ||||||||||  |||||      
          ag uau cauugA UACUUA UUGUCGUAUU  Ugcuu     c
gcugcuauuu  g   -      G      -          -A     auaaa 

>sme-mir-36b (-29.80)   [sme-miR-36b*:21-44] [sme-miR-36b:59-81]

uuuuuua    --       -cuG          -       -     Cuag 
       acag  ucuaacu    GAUUGAUGUU AUUCGGU AUGAU    a
       ||||  |||||||    |||||||||| ||||||| |||||    a
       uguc  agauuga    CUAAUUACAG UGGGCCA Uauua    u
-uccuga    ug       cGUA          A       C     aaaa 

>sme-mir-1992 (-35.60)   [sme-miR-1992-5p:17-37] [sme-miR-1992-3p:53-72]

----uu        aag        --UU           U     gaa 
      augaaaua   aauUUGUC    GAACAACUGCU AUgau   a
      ||||||||   ||||||||    ||||||||||| |||||    
      uacuuuau   uugaaCAG    CUUGUUGACGA Uacug   a
uauagu        --a        UUAC           C     uaa 

>sme-mir-2154-1 (-31.50)   [sme-miR-2154:21-44] [sme-miR-2154*:66-86]

----uucg      uauu     uUC          UU   A      a     aau 
        agugau    agaau   AGCUGUACAA  GGC UUGUGU ugaua   g
        ||||||    |||||   ||||||||||  ||| |||||| |||||    
        ucacua    uuuua   UCGAUAUGUU  CUG AACAca auuau   a
ccaccuaa      --uu     UAU          -U   -      -     aua 

>sme-mir-216 (-30.80)   [sme-miR-216-5p:20-44] [sme-miR-216-3p:61-83]

--ccuguc       ag    C    -    CC     A       --     a 
        augauuu  caag AAUC UCAG  UGUUA UAGGAGU  Uugga a
        |||||||  |||| |||| ||||  ||||| |||||||  |||||  
        uacuaaa  guuC UUAG AGUC  GCAAU AUCCUCa  aauuu u
aaccauuu       cu    A    U    -U     -       ua     g 

>sme-mir-2156a (-20.20)   [sme-miR-2156a*:21-42] [sme-miR-2156a:56-78]

-uuuuuca    a      -ua        -U     A   C   aaua 
        aguc ugaaaa   AAAAGUUU  GGGUC UAA AUA    a
        |||| ||||||   ||||||||  ||||| ||| |||    u
        uuag acuuuu   UUUUCAAA  CCCGG AUU Uau    u
acgacauc    a      uAC        UC     C   C   aauu 

>sme-mir-9b (-29.40)   [sme-miR-9b:21-43] [sme-miR-9b*:54-76]

---acaaaug        a   uU          U   C       aug 
          ucaaauca gau  CUUUGGUUGU UAG UAUAUGA   u
          |||||||| |||  |||||||||| ||| |||||||   c
          aguuuagu cuG  GAAACUAAUA GUC AUAUACu   u
ccuucgaaug        -   UU          C   -       gga 

>sme-mir-9a (-25.00)   [sme-miR-9a:21-44] [sme-miR-9a*:63-84]

--u  u   --au   c       UCU     UU     C   A     g   aa 
   ug uua    uga uauaugg   UUGGU  UCUAG UGU UGAUu uaa  u
   || |||    ||| |||||||   |||||  ||||| ||| ||||| |||   
   ac agu    auu auauaCU   AACCA  AGAUC ACA ACuaa guu  u
ucu  u   guau   -       -UU     UU     -   C     a   gu 

>sme-mir-1175 (-28.60)   [sme-miR-1175:18-40] [sme-miR-1175*:60-80]

--uauu           auG   -    AU      A       -    aa 
      aaaauucuaaa   AGU GGAG  GUUGAA UUCAAAa aaau  u
      |||||||||||   ||| ||||  |||||| ||||||| ||||   
      uuuuaggguuu   UCA CCUC  CAACUU GAGUuuu uuug  u
ucaaac           -aa   U    CU      A       a    cu 

>sme-mir-2157 (-23.40)   [sme-miR-2157:21-42] [sme-miR-2157*:53-74]

------   a   u  agucaaau        UUG          C  -  g 
      uua agg gc        uuUGAGUA   CAUCAAGAAC GA au u
      ||| ||| ||        ||||||||   |||||||||| || ||  
      aau ucc cg        aAAUUCAU   GUAGUUUUUG Cu ua u
uucucu   c   u  ----aauu        UAA          A  a  a 

>sme-mir-2158 (-31.60)   [sme-miR-2158-5p:21-42] [sme-miR-2158-3p:61-82]

-  aa     u   -aau    UG         U   A       c  a   u 
 gg  aguaa uuu    auuu  AGUAUUUUU CGU UACCGAa ag uca c
 ||  ||||| |||    ||||  ||||||||| ||| ||||||| || |||  
 cu  uuauu aaa    uaAG  UCAUAAGAA GCA AUGGCUu uc agu g
g  gc     u   gagu    GU         -   -       -  -   u 

>sme-mir-2159 (-35.10)   [sme-miR-2159-5p:21-39] [sme-miR-2159-3p:55-77]

-a   -ca         a   cU       C    A     ug     ag 
  aug   aaugaauuc aaa  GCCUUUU UUUG GUAGC  uccgc  a
  |||   ||||||||| |||  ||||||| |||| |||||  |||||   
  ugc   uuacuuaag uuU  UGGGAAA AAAC CGUCG  AGGug  c
aa   uac         g   AG       U    -     --     ga 

>sme-mir-7d (-33.30)   [sme-miR-7d:21-43] [sme-miR-7d*:83-104]

-----aaaa       aacaauc          U  U   UU       ugcga      a      a 
         acuauaa       cuUGGAAGAC AG AAU  UGUUGUa     aauuuu ucagac u
         |||||||       |||||||||| || |||  |||||||     |||||| |||||| u
         ugauauu       gAACCUUUUG UC UUA  ACAACau     uuagga aguuug c
gcaacuaac       ---caaa          -  U   UU       -----      g      a 

>sme-mir-2160-1 (-32.70)   [sme-miR-2160:21-42] [sme-miR-2160-1*:65-85]

-aaaauc        -uaaauaU   G        U          guacua 
       uuugugau        GGC CUUAUGUG AGAACCGGuu      u
       ||||||||        ||| |||||||| ||||||||||       
       aaacacua        CCG GAAUGUAC UUUUggucaa      a
cuacuaa        ugauAAAC   A        U          auuuuu 

>sme-mir-2161 (-35.00)   [sme-miR-2161*:20-42] [sme-miR-2161:65-86]

--uuuuccu   u     a a        U                 cuu  u 
         uug cugua u GUAUCUUU UUAUUACGUACAAAaug   gc u
         ||| ||||| | |||||||| |||||||||||||||||   ||  
         aac gauau a UAUGGAGA AAUGAUGCGUGUuuuac   ug a
cugcuauuu   u     a C        U                 agu  g 

>sme-mir-2162 (-24.30)   [sme-miR-2162-5p:21-40] [sme-miR-2162-3p:55-76]

---  gcgu  u  a    -gu      CU          U    -cu u 
   ug    ag cu uggu   auUGUG  UAUUUGUAUA UGCa   g u
   ||    || || ||||   ||||||  |||||||||| ||||   | a
   ac    uc ga acca   UAACAC  AUAAACGUAU AUGu   c a
ccu  aaau  -  -    guu      UU          U    uuu u 

>sme-mir-2163 (-31.00)   [sme-miR-2163-5p:21-42] [sme-miR-2163-3p:65-86]

auu    --  uu       -ca             A      UCa       uug 
   acga  ga  uuauuuu   UAACUUGAUAGAU UAUGCA   acgagau   c
   ||||  ||  |||||||   ||||||||||||| ||||||   |||||||    
   ugcu  uu  aguaaag   GUUGAAUUAUCUG AUACGU   Uguuuua   u
-ac    aa  uu       cUG             -      ---       uua 

>sme-mir-133a (-32.62)   [sme-miR-133a*:20-42] [sme-miR-133a:67-88]

---aaucgca       u          -      AA U      A     aaaug 
          guauauu auagCAGCUG UUGACG  G AUCAAA uaguu     a
          ||||||| |||||||||| ||||||  | |||||| |||||     u
          cauguaa uauUGUCGAC AACUGC  C UGGUUu auuaa     g
ccuacaauua       -          C      CC -      -     auaua 

>sme-mir-2164 (-27.10)   [sme-miR-2164-5p:20-41] [sme-miR-2164-3p:54-76]

----ccauau     ua   aa            -       -     u a 
          ucagg  aua  aUUAUAUUUGAU UCACGUA GAGAu g g
          |||||  |||  |||||||||||| ||||||| ||||| |  
          agucu  ugu  UAAUAUGAACUA AGUGCGU UUcua c a
ucuacuucuc     --   aa            U       G     u u 

>sme-mir-2165 (-24.57)   [sme-miR-2165-5p:20-42] [sme-miR-2165-3p:71-92]

--aaacuuuau     uc   UC      C          C    uguaaauuu u 
           augaa  cga  AUUCUA AGGAUCGAAU AGUu         g a
           |||||  |||  |||||| |||||||||| ||||         |  
           uacuu  guU  UGAGAU UCUUAGCUUA Ucaa         c a
gcuccuuauuu     ua   UA      U          A    cuucucuau a 

>sme-mir-36c (-23.60)   [sme-miR-36c*:19-39] [sme-miR-36c:61-80]

aauuuca  -       -  C  -   U    CAA     UU     cga   g 
       ac auaaauu ag GA UGA UGUC   CUGGU  ggugu   guu a
       || ||||||| || || ||| ||||   |||||  |||||   |||  
       ug uauuuaa uc cU ACU ACAG   GGCCA  CUacg   uaa a
cucuaac  c       a  u  U   U    AUG     --     ---   a 

>sme-mir-96a (-29.90)   [sme-miR-96a:21-44] [sme-miR-96a*:66-88]

---cuucau      auauau        A   A  GA         agu uu   u 
         uugagu      cgUUUGGC CUU AG  AUUGUCACU   g  cuu u
         ||||||      |||||||| ||| ||  |||||||||   |  |||  
         agcuca      GCGAACUG GAA UC  UAACAGUgg   c  gaa u
acuucgcuu      -acuuu        A   A  -A         --- uu   a 

>sme-mir-2166 (-18.20)   [sme-miR-2166:63-85]

--auaugaaaucuauuuuucucua       a   a a        u   gc 
                        gaauaaa cag u accaauca guu  a
                        ||||||| ||| | |||||||| |||  g
                        CUUAUUU GUU A UGGUUagu uaa  u
cgauaaauuaaaucuaaauaCUCA       C   C C        c   gu 

>sme-mir-2167 (-30.10)   [sme-miR-2167:63-84]

---ugug    c     uau           a  u    u    u   -a   u 
       aaug aauuc   cuuugaaagac ag cuua acau cuu  gug c
       |||| |||||   ||||||||||| || |||| |||| |||  ||| a
       uugc uuaag   gAGACUUUCUG UC GAAU UGUG gaa  uac a
cugcuaa    -     uac           G  -    -    U   cc   a 

>sme-mir-2147b (-34.90)   [sme-miR-2147b:21-37]

---ccuucu     uac     gC    A      A    ucc    ca 
         uugga   uaacg  GGAA ACUCGC CGUG   ucgu  a
         |||||   |||||  |||| |||||| ||||   ||||  c
         aaccu   auugc  ccuu ugagcg gcac   agca  u
acagcucuu     -uu     ac    g      -    uuu    cu 

>sme-mir-2168 (-39.80)   [sme-miR-2168-5p:21-40] [sme-miR-2168-3p:53-73]

-----a         uuc    g  A          -      A        
      ugccagaaa   ugau cc UAUUCGUUAA GGUUGU ACcagac 
      |||||||||   |||| || |||||||||| |||||| |||||| a
      augguuuuu   acug gG GUAAGCAGUU CCAACA Ugguuuc 
uacuaa         ---    a  A          U      C        

>sme-mir-2169 (-21.80)   [sme-miR-2169-5p:21-41] [sme-miR-2169-3p:52-74]

----   uuuuu      ucu   A        AU    U  G   uaa 
    gaa     uaucac   aac ACUUUGAA  UCGA CU AUa   a
    |||     ||||||   ||| ||||||||  |||| || |||    
    cuu     auagug   uUG UGAAAUUU  AGCU GA UAu   a
ccug   --uuu      cuu   G        AU    C  A   uau 

>sme-mir-754d (-34.60)   [sme-miR-754d:21-38]

--ac  ugca      - a c                UU        u 
    ga    uucacc c g auGUUGCUUGGGGGUA  AUuauauu a
    ||    |||||| | | ||||||||||||||||  ||||||||  
    cu    aggugg g c uauaacgaacuucuau  ugauauag u
acaa  uaua      a a -                uu        u 

>sme-mir-2170 (-35.40)   [sme-miR-2170:54-73]

auaaau    -----               u          a     uu 
      ggca     uuauauuuucucuac aaauuucacu ugaau  a
      ||||     ||||||||||||||| |||||||||| |||||  a
      ucgu     aauauaaaAGAGAUG UUUAAAGUGA Acuua  g
---ugu    uaaau               U          C     ug 

>sme-mir-2147c (-28.50)   [sme-miR-2147c:21-44]

--uuguuuugcuguaa     gC    A  UC  U    C      cg 
                uaacg  GGAA AC  GC CGUG CAUCGU  u
                |||||  |||| ||  || |||| ||||||  c
                auugc  ccuu ug  cg gcac guagca  u
acuccuuuuaacccua     ac    g  ga  -    u      cu 

>sme-mir-2171 (-19.90)   [sme-miR-2171:21-41]

----gaaaac  aacag    -a   U     AA  C  --U       aug 
          gc     uaca  auG GAUGG  AU GC   AUUUCAa   c
          ||     ||||  ||| |||||  || ||   |||||||    
          cg     augu  uac uugcc  ug cg   uagaguu   u
aaagauaaua  ---ga    ag   -     gg  a  uau       ccc 

>sme-mir-2172 (-30.10)   [sme-miR-2172-5p:20-44] [sme-miR-2172-3p:58-80]

-----a    uuu    u    uu  -        A         GG   uu  u 
      auaa   ucca ugau  GG AAAUAAUG CUAUGCAUG  ACA  ag a
      ||||   |||| ||||  || |||||||| |||||||||  |||  || g
      uauu   aggu acug  CC UUUAUUAU GAUAUGUAC  Ugu  uc a
agcgac    --u    u    -U  G        -         -A   --  g 

>sme-mir-96b (-28.20)   [sme-miR-96b:21-43] [sme-miR-96b*:62-83]

---uaucaaa     g     aaUUU        A     C     -ca   g 
          caguu ucuga     GGCACUUA GGAAU GUCAC   guu c
          ||||| |||||     |||||||| ||||| |||||   ||| a
          guuag agacU     CUGUGAAU CUUUA CAGug   uag u
ucuacuauug     -     AUUAU        -     -     uua   u 

>sme-mir-2173 (-24.40)   [sme-miR-2173*:22-44] [sme-miR-2173:61-84]

---acaauucua    u       AA          A     AC     gaaag 
            guaa caaugga  CAACUUGUAU UGCAU  GUAua     a
            |||| |||||||  |||||||||| |||||  |||||      
            uauu guuaCUU  GUUGAAUAUA AUGUA  CAUau     a
agccuacuaaaa    -       AA          C     --     aacaa 

>sme-mir-2174 (-28.50)   [sme-miR-2174:54-73]

---ucuu   aac        c    a  c    uu   uu     ca 
       ugg   guuaacau ggaa ac cgca  gcg  auugu  a
       |||   |||||||| |||| || ||||  |||  |||||  c
       acc   cgauugua CCUU UG GUGU  CGC  UAaca  c
agcuuuu   -cu        C    G  A    --   UU     cu 

>sme-mir-2175 (-26.30)   [sme-miR-2175:69-93]

cuau   ua    ---u --a     -       u  a    -        -   c   ac 
    ugg  gcca    g   uguua uuugcaa aa auau caguaaaa uga auu  u
    |||  ||||    |   ||||| ||||||| || |||| |||||||| ||| |||   
    acc  cggu    c   acAGU AAACGUU UU UGUA GUCAUuuu auu uaa  a
-auu   --    ucau gua     U       U  C    A        u   u   ga 

>sme-mir-753c (-35.90)   [sme-miR-753c:21-40]

-uuuuaau       -      A         U           u 
        aaaguau auuuaa AGCUUGGAU GUGAUCUCAua a
        ||||||| |||||| ||||||||| |||||||||||  
        uuucaua uaaauu ucgaacuua uacuagaguau u
caacuacu       a      c         u           u 

>sme-mir-2176 (-45.70)   [sme-miR-2176:45-63]

--    c a                       u       c 
  ugau a aagcaaaaccuuugugaaucgga uguucuu a
  |||| | ||||||||||||||||||||||| ||||||| g
  acua u uucguuuuggaAACACUUAGUCU ACAAGAa u
ac    u c                       U       u 

>sme-mir-2177 (-25.50)   [sme-miR-2177-5p:21-43] [sme-miR-2177-3p:54-76]

--aaa   c    ca   ga   -A             U  A      g 
     aau auug  cau  uaC  AGAAAUUCAUUGG UA UUUCau a
     ||| ||||  |||  |||  ||||||||||||| || ||||||  
     uua uaac  gua  aUG  UCUUUAAGUGACC GU AAagua u
uuuac   u    aa   -g   GC             C  A      u 

>sme-mir-2178 (-43.60)   [sme-miR-2178:62-79]

--uac                 ca       a         c   ucauc 
     gagacauuucaucauug  acauuuc ucauuauag aau     a
     |||||||||||||||||  ||||||| ||||||||| |||      
     cucuguaaaguaguaAC  UGUAAAG AGUAAUauc uua     a
aguaa                 UC       C         -   cacgu 

>sme-mir-2179 (-27.10)   [sme-miR-2179*:20-45] [sme-miR-2179:58-79]

--caua  -a      uu     U        A      UUUAA       c 
      cu  agucua  uguaU GCAAAAAU UUUAUA     CUCAuuu u
      ||  ||||||  ||||| |||||||| ||||||     |||||||  
      ga  ucggau  acgUA CGUUUUUA AGAUAU     GAguaaa c
acugcc  gg      -u     U        G      ---CA       u 

>sme-mir-315 (-25.70)   [sme-miR-315:21-43] [sme-miR-315*:62-83]

----guu     ag    aua   U      U    CUCU  G     a   aa 
       gagcg  gcuu   gaa UUUGAU GUUG    GA AGUUa uau  u
       |||||  ||||   ||| |||||| ||||    || ||||| |||  u
       uucgu  cgaa   cuU AAACUA CAAC    CU UCAau gua  u
gcuacug     ag    --a   U      C    -AAU  G     a   ac 

>sme-mir-2180 (-10.80)   [sme-miR-2180:47-66]

-auauauauauauauauac   - -   c   c   a u   gg 
                   caa c ccu auc cau c cau  a
                   ||| | ||| ||| ||| | |||   
                   gUU G GGA UAG GUA G GUa  a
guuauaaaguucauauuaa   C U   A   U   A -   aa 

>sme-mir-2181 (-29.30)   [sme-miR-2181:21-44]

--ucaa  auu    u   -u  UA      U     GC        ug    a 
      cu   cgau uug  ca  UGCUGU AAUUA  GAUUGGUU  aaag g
      ||   |||| |||  ||  |||||| |||||  ||||||||  |||| u
      ga   gcua aau  gu  acgaca uuaau  cuaaccaa  uuuc u
acuacc  -gu    u   uu  uc      c     -a        --    u 

>sme-mir-2155 (-35.10)   [sme-miR-2155:48-70]

--uauuugauguaaagu     a  a        u         a 
                 gcauc gg uaagugua agcaguguu a
                 ||||| || |||||||| ||||||||| u
                 cguAG CC AUUCACAU UUGUCACAG u
guaaguuuaaagagacu     C  -        U         u 

>mmu-mir-2182 (-59.50)   [mmu-miR-2182:35-56]

---   -  cg       -----c       u      uccguA    ACAUU    A         
   ccc ca  agcggcg      cggggag gggucu      CGCC     UCCC CGCCGCGa 
   ||| ||  |||||||      ||||||| ||||||      ||||     |||| ||||||| c
   ggg gu  uugccgc      gucccuu cucggg      gcgg     aggg gcggcgcg 
uaa   a  ca       ucacuu       -      ----uc    --cuu    -         

>mmu-mir-2183 (-16.40)   [mmu-miR-2183:7-24]

-------au      -       UGACC  -  gc 
         auucUU GAACCCC     UC CU  u
         |||||| |||||||     || ||  u
         uaagaa cuugggg     ag ga  u
uaauacguc      u       ----u  u  ac 

>dre-mir-2184 (-47.00)   [dre-miR-2184:23-43]

-----------    au  u     aag     AAC        UUU          guu 
           cuga  ga gcccu   cccua   AGUAAGAG   AUGUGCUgag   a
           ||||  || |||||   |||||   ||||||||   ||||||||||    
           ggcu  cu uggga   gggau   ucauucuc   uacacgacuu   a
uuacacugucc    au  u     aaa     -gu        ugu          aaa 

>dre-mir-2185 (-42.20)   [dre-miR-2185:23-43] [dre-miR-2185*:59-79]

ca   uc       -u  -c  c C       GACUC         cgca 
  ggu  ucuggcu  ga  gu c GGUGCAG     CGCGGCUCu    g
  |||  |||||||  ||  || | |||||||     |||||||||    u
  ucg  agaccgg  cu  ca G CCACGUC     GCGCCGaga    g
--   -c       uu  uu  C A       GACUA         cuuu 

>dre-mir-429b (-34.90)   [dre-miR-429b:67-88]

ucuauacu  -ag    a    -c     u   u -          a  -     ug ug 
        gc   uaaa uccu  ugauu gug c uuaccaggca gu uuaga  u  a
        ||   |||| ||||  ||||| ||| | |||||||||| || |||||  |  u
        cg   guuu aggg  acuaa UAC G AAUGGUCCGU CA AAUcu  g  a
--------  cua    a    uc     c   C U          -  U     gu uc 

>dre-mir-1388 (-37.20)   [dre-miR-1388*:23-44] [dre-miR-1388:60-81]

--uga  ga    -    gc    cA  A   U C         A  -  uga 
     ug  ugag cagu  uuuc  GG CUG C AACCUGAGA UG cu   g
     ||  |||| ||||  ||||  || ||| | ||||||||| || ||    
     ac  gcuc guca  aaaG  CC GAC G UUGGACUCU ac gg   u
ccgaa  uc    u    -a    UA  C   U C         A  u  uuu 

>dre-mir-1788 (-43.40)   [dre-miR-1788:23-44] [dre-miR-1788*:59-79]

ucaaccac      --  a   g            A        C a  uc 
        ugucuu  gu ucc aGGCUUGUUUUA GUUGCCUG G uc  u
        ||||||  || ||| |||||||||||| |||||||| | ||  u
        acagag  cg agg UCUGAACGAAAU CGACGGAC c ag  a
acagcaca      ac  g   G            -        u -  ua 

>dre-mir-2187 (-42.10)   [dre-miR-2187*:22-43] [dre-miR-2187:61-82]

---uc  a    a          uUUA               --UUUAg      
     ug auug ugauucuggc    AUUAGUAUAGCCUGU       ugauc 
     || |||| ||||||||||    |||||||||||||||       |||| a
     ac uaac auuaagaccG    UAAUCGUAUCGGACA       acuac 
ggugu  g    g          UAUC               UUucuua      

>dre-mir-196c (-43.00)   [dre-miR-196c:23-44]

-----------cccgucc     au        U         GA          g u a 
                  agcug  gcgugguu AGGUAGUUU  UGUUGUUGGG u g c
                  |||||  |||||||| |||||||||  |||||||||| | | u
                  uugac  ugcauuag uccgucaaa  acaacagcuc g c u
ugccggaacuacuuccgu     --        u         ga          g u c 

>dre-mir-2190 (-84.80)   [dre-miR-2190:23-45]

gauucaa        -     guC   -        U    U   A      -    c 
       cccggcgg ggcug   GGC CCGUCCGG GCGC CGG Uccccc cccu u
       |||||||| |||||   ||| |||||||| |||| ||| |||||| ||||  
       gggccgcc ccggc   ucg ggcaggcc cgcg gcc aggggg gggg c
-----gc        g     ---   a        -    -   -      a    g 

>dre-mir-2191 (-47.30)   [dre-miR-2191:68-88]

gugccu   --ucaa        ccu      u  u    a     gu  a      u 
      ugc      gggucuca   cugcca gg auug aggug  ag gagugu u
      |||      ||||||||   |||||| || |||| |||||  || ||||||  
      acg      cucagagu   gACGGU CC UAAC UCCAC  Uc cuuaca g
-----a   uccaaa        cau      C  -    A     AC  a      u 

>dre-mir-107b (-33.80)   [dre-miR-107b:51-71]

--    gc   u   --    u  c           c   -ua    
  ucug  cac cug  ggcu cu uacaguguugc uug   gcc 
  ||||  ||| |||  |||| || ||||||||||| |||   || u
  agac  gug gac  UCGG GA AUGUUACGACG Aac   ugg 
ca    au   c   UU    -  C           -   uag    

>dre-mir-455b (-50.10)   [dre-miR-455b:23-44]

auc    -----uu  c         g          U      A   U   gag 
   guug       cc ugaagugag GUAUGUGCCC UGGACU CAU gug   g
   ||||       || ||||||||| |||||||||| |||||| ||| |||    
   caac       gg acuucauuc cauauacggg accuga gua cac   c
--a    uacaucc  u         a          u      c   c   gac 

>dre-mir-222b (-39.30)   [dre-miR-222b:55-77]

---------     ga  ug a         c    -     -----ag    ug 
         gacgu  uc  c gacucagua ucgg uguag       ucug  u
         |||||  ||  | ||||||||| |||| |||||       ||||  g
         cugca  ag  g CUGGGUCAU AGUC ACAUC       agac  a
caucgcaca     -g  gu A         A    U     GAcgaga    uu 

>dre-mir-2196 (-29.00)   [dre-miR-2196:23-46]

----------------   -gg   uu     --      --        GUGC   CA         
                cag   uaa  gcuuc  gaaugu  uCCUCUCU    UGC  UUUGGGAC 
                |||   |||  |||||  ||||||  ||||||||    |||  ||||||| c
                guc   guu  ugggg  cuugua  aggaggga    gcg  aagccuug 
aauaaugaaaaacaaa   aaa   uu     uc      au        --aa   --         

>dre-mir-2198 (-42.80)   [dre-miR-2198:68-88]

cggcgagcaauacucauaacucccaa      gcga    a      -c  -   c 
                          gcgccu    acgc agcucu  cu uac c
                          ||||||    |||| ||||||  || |||  
                          CGCGGA    UGUG UCGAgg  ga gug c
--cguccgggcccaaauccggaccUC      ACCC    C      ua  c   g 

>dre-mir-126b (-40.06)   [dre-miR-126b:60-81] [dre-miR-126b*:61-81]

-----ga  c       cc       u           u       c cuaugc 
       gu uuaccgg  ucacggu cauuauuacuu ugguacg g      c
       || |||||||  ||||||| ||||||||||| ||||||| |      a
       ca agugguc  agugucA GUGAUAAUGAG GCCAUGC c      c
aucaaca  -       --       C           U       U aacucu 

>dre-mir-2186 (-22.90)   [dre-miR-2186:69-88]

aagucuugucgcauacguuuuguaacaacaaauaauaacuu     c   uu au      gu 
                                         gacuu uag  g  cauuuc  a
                                         ||||| |||  |  ||||||   
                                         CUGAA AUC  C  GUGAAg  u
-----------------ucgcauuagaucuccgguaaaaAU     A   -U CG      ac 

>dre-mir-2188 (-41.14)   [dre-miR-2188:23-43] [dre-miR-2188*:62-82]

-   -c     ca  aa    a  A     C           U   gugagg 
 gga  aauau  gc  ugug ga AGGUC AACCUCACAUG CCu      c
 |||  |||||  ||  |||| || ||||| ||||||||||| |||       
 ccu  uuaug  cg  acac CU UCCAG UUGGAGUGUGU gga      u
c   uc     cc  gc    c  A     A           C   aggaag 

>dre-mir-2189 (-45.30)   [dre-miR-2189:67-88]

ugcacaguuuu  uccc    a       -              c        -u     
           ga    gccc aauugaa cacagcugaugcaa caaucaaa  uggu 
           ||    |||| ||||||| |||||||||||||| ||||||||  ||| a
           cu    cggg uugauuu GUGUCGACUAUGUU GUUAGUuu  auca 
-------ccug  ucuu    a       U              U        uu     

>dre-mir-2192 (-45.60)   [dre-miR-2192:68-88]

  c   a     --  a        c  ug      a          ---u     g 
gg aga uguua  ca aauggcag cu  gucacu uucacuuuca    guuug a
|| ||| |||||  || |||||||| ||  |||||| ||||||||||    ||||| u
cc ucu acaau  gu uuacuguC GA  CAGUGG AAGUGAAAgu    uaaau a
  -   -     cg  c        A  GU      A          cauu     a 

>dre-mir-196d (-24.82)   [dre-miR-196d:8-29]

-a ug   U  GU     UA      U   cucua 
  g  auu AG  AGUUU  UGUUGU GGG     u
  |  ||| ||  |||||  |||||| |||     u
  c  uaa uc  ucaaa  acaacg ccc     u
uc gu   u  ug     gc      c   uauau 

>dre-mir-2193 (-18.62)   [dre-miR-2193:23-46]

----------------c        c  ca   au    A  U    AUCAAUU       Aa 
                 aaaaucuu au  auc  gggU UG GUGU       GUGUGAA  a
                 |||||||| ||  |||  |||| || ||||       |||||||  a
                 uuuuagaa ug  uag  uuca ac uacg       uacacuu  u
gcaccggcguaaaauau        a  ag   -c    a  -    -aauauu       cu 

>dre-mir-2194 (-15.79)   [dre-miR-2194:67-88]

accu  u    acu     cau     c  aauuuuaaauagga    uu   - uu      a 
    gc gggu   gauuu   uucuu ca              aauc  guc a  cauugc a
    || ||||   |||||   ||||| ||              ||||  ||| |  ||||||  
    ug ucua   cuaaa   aagaa GU              UUAG  CAG U  GUAAUG u
---u  u    cuc     ---     u  ------------GG    -U   C UC      u 

>dre-mir-2195 (-25.10)   [dre-miR-2195:68-88]

-----------------------c       -a   a  ugau      --a   aaa  a   uc     
                        cucugau  acc ca    ucuuaa   ugu   cc cua  aagu 
                        |||||||  ||| ||    ||||||   |||   || |||  ||| u
                        GGGAUUG  UGG GU    AGAguu   aca   gg ggu  uucu 
uuagcuaaguguccacacuugcGU       AG   G  ---U      aua   -ag  -   uu     

>dre-mir-2197 (-31.32)   [dre-miR-2197:23-42]

---a     aaaggaaaac   -     --     GA    --UAU      a g    aau 
    gugua          guu gugAU  GAUUC  CUCA     GGUGcu u cagu   a
    |||||          ||| |||||  |||||  ||||     |||||| | ||||    
    cacau          cga cacua  cugag  gagu     uuacga a gucg   g
guua     -------gga   u     au     ag    ucguu      - g    gga 

>mtr-MIR2118 (-68.60)   [mtr-miR2118:98-119]

--a     a  a  -        u aaa    uu        u      u     a   -       aacagaucuaauucau 
   gagag ga ag ggaaaggg g   gagc  gaggaagu auggga auggg gga ucgguaa                c
   ||||| || || |||||||| |   ||||  |||||||| |||||| ||||| ||| |||||||                 
   cucuc cu uc ccuuucuc c   cuug  uuccuuua uAUCCU UACCC CCU AGCCAUU                u
uac     -  c  a        u ---    uu        u      -     A   U       ucuuuaauaaguuaag 

>mtr-MIR2199 (-126.58)   [mtr-miR2199:442-462]

-------------------------a      c g      u         u           -uaca    a      aaua ug u  a          uuaauuu        u uc    --g         uagguc    auuuucuu     a      u  agaaaauaucauaugauaucuucaucuuugcuuucuauaucacuuauauaauuaacauguuagcuacauagaucuaugcaauacaguaauuaaauaucau 
                          uaugug u ugcaau gugauccgu cuaguguauca     auuc cagcuu    u  a ua uuccaguuua       ggaauaua a  uuuu   auagaggcc      acua        guuuu auauau ua                                                                                                    a
                          |||||| | |||||| ||||||||| |||||||||||     |||| ||||||    |  | || ||||||||||       |||||||| |  ||||   |||||||||      ||||        ||||| |||||| ||                                                                                                     
                          augcac g guguug CACUAGGCA GAUCACAUAGU     uagg gucgag    a  u au aaggucaaau       ucuuguau u  aaaa   uauuuccgg      ugau        uagaa uauaua au                                                                                                    u
uguguggugguacggguaaauaaaaa      u g      c         C           uuuua    -      ---- gu u  a          --caaau        u uu    gua         -uaauu    augccaau     c      c  auaugaacaaaagauuaauauacauaguuguuuuuuaccaucacuaaagaguugguugguuuuuguuuccuuuuucuugcauacuuaaacuauaaaacau 

>sbi-MIR156f (-69.70)   [sbi-miR156f:3-22]

--          -    -           u    c  a    aucuauauacggcugcuccuggcg 
  gcUGACAGAA GAGA GUGAGCACgca cggc ag cugc                        a
  |||||||||| |||| ||||||||||| |||| || ||||                         
  cgacugucuu cucu cacucgugcgu gucg uc gacg                        g
cu          u    u           u    -  -    cggaucuguagguagguagguaua 

>sbi-MIR156g (-59.90)   [sbi-miR156g:2-21]

--        -    -         a      g  ga       cgg 
  gUGACAGA AGAG AGUGAGCAC cggccg cg  acggcac   c
  |||||||| |||| ||||||||| |||||| ||  |||||||    
  uacugucu ucuc ucacucgug gccggc gc  ugccgug   g
cc        a    g         c      -  --       uag 

>sbi-MIR156h (-61.10)   [sbi-miR156h:2-21]

---         -   -         a     gggc          cg     
   gUGACAGAA GAG AGUGAGCAC cggcc    gugacggcac  guca 
   ||||||||| ||| ||||||||| |||||    ||||||||||  ||| a
   uacugucuu cuc ucacucgug gccgg    cgcugccgug  uagg 
gcc         u   g         c     ----          --     

>sbi-MIR156i (-67.25)   [sbi-miR156i:3-22]

a        -     -        a      g   a       g   ugaaccgagacg  g 
 cUGACAGA AGAGA GUGAGCAC cagcgg cag cugcauc auc            ac c
 |||||||| ||||| |||||||| |||||| ||| ||||||| |||            ||  
 gacugucu ucucu cacucgug gucguc guc gacguag uag            ug a
a        c     u        c      -   -       -   uaguaguaagga  a 

>sbi-MIR160f (-56.60)   [sbi-miR160f:1-21]

------------------------   C         G       u   a   aa   a      cg 
                        UGC UGGCUCCCU AAUGCCA ccg gag  gca ugccau  u
                        ||| ||||||||| ||||||| ||| |||  ||| ||||||  g
                        acg acugaggga uugcggu ggc cuc  cgu gcggua  u
cgacgacuccguuacguucguugg   u         g       u   c   --   -      cc 

>sbi-MIR164d (-80.30)   [sbi-miR164d:1-21]

-        C           A   uccua   ucuc  gc   -c        cga      uc      c    u      g 
 UGGAGAAG AGGGCACGUGC ugc     acu    gc  gcu  cucuccgc   gaucca  guucau uaua cuccau g
 |||||||| ||||||||||| |||     |||    ||  |||  ||||||||   ||||||  |||||| |||| ||||||  
 accucuuc ucuugugcacg acg     uga    cg  cga  gagaggcg   cuaggu  caggua auau gaggua a
u        c           c   ucaua   ---u  au   aa        ---      --      u    c      u 

>sbi-MIR164e (-107.40)   [sbi-miR164e:3-23]

--------------------------------guUGGAGAAGCAGGGCACGUGCAgagacacgccggccggagcac     c  c    aga         --   u    cu    ca 
                                                                            ggccg cg cgau   ucgaccucg  cac cgca  cgca  c
                                                                            ||||| || ||||   |||||||||  ||| ||||  ||||  c
                                                                            cuggc gc gcua   agcuggagu  gug gcgu  gcgu  a
uaccaccucuuccccucgugcacgucacguccucgaucgcccacuucguuguucguucuccaaggagcgaucgaag     u  u    --g         ag   u    cu    cg 

>sbi-MIR166h (-80.89)   [sbi-miR166h:162-181]

--a        uu      cu    gg gc      u    uccg    u       -         cucucuccccuagucuucgcgcgcuucc 
   ggggaaug  gucugg  cggg  c  cgccgc ccgc    cucc uccuucu cuggucucu                            u
   ||||||||  ||||||  ||||  |  |||||| ||||    |||| ||||||| |||||||||                            c
   cCCCUUAC  CGGACC  GCUc  g  guggug ggcg    gagg aggagga gaccagagg                            a
acc        UU      AG    ua au      -    ----    c       c         uucucuuccuccuucucugcuaccucua 

>sbi-MIR166i (-47.30)   [sbi-miR166i:66-85]

--      uc      - g     ccggccggacagucggccgg 
  ggaaug  gucugg c cgaga                    c
  ||||||  |||||| | |||||                     
  CCUUAC  CGGACC G GCUcu                    g
cC      UU      A -     ggcaggcuaggucuccugcg 

>sbi-MIR166j (-48.90)   [sbi-miR166j:85-104]

--ugu      uu         u   -   cucucuacau       ugga        c 
     ggaaug  gucugguuc agg ccu          gcaagca    uguaguag a
     ||||||  ||||||||| ||| |||          |||||||    ||||||||  
     CCUUAC  CGGACCAGG Ucc ggg          cguucgu    acgucauc g
acucC      UU         C   a   ---------u       --ua        c 

>sbi-MIR166k (-53.80)   [sbi-miR166k:83-102]

---        g   a   a         uc   u     -     u    uu 
   gaauggag cug ucc agauccucc  gag gcgaa acaaa gccg  u
   |||||||| ||| ||| |||||||||  ||| ||||| ||||| ||||   
   CUUACUUC GAC AGG Ucugggggg  cuc cguuu uguuu uggu  u
cUC        G   C   C         uu   u     g     -    uu 

>sbi-MIR167h (-41.60)   [sbi-miR167h:1-21]

--            C         aag   acgag  c       u 
  UGAAGCUGCCAG AUGAUCUGa   cau     uc uucguua c
  |||||||||||| |||||||||   |||     || ||||||| a
  acuuugacgguc uacuagacu   gua     ag aaguagu u
uu            -         --a   gauaa  a       c 

>sbi-MIR167i (-59.10)   [sbi-miR167i:3-23]

--     A    C  -            uu     g   -cc  -u   a     -c      g   cc 
  agUGA GCUG CA GCAUGAUCUAgc  ugguu gca   au  ggc ggcgc  cacaca ugg  u
  ||||| |||| || ||||||||||||  ||||| |||   ||  ||| |||||  |||||| |||   
  uuacu cgac gu cguacuagauug  acuaa cgu   ug  ucg ccgug  gugugu gcc  c
cu     c    a  a            uu     a   cca  uc   -     au      -   uu 

>sbi-MIR169e (-61.70)   [sbi-miR169e:1-21]

--      A               auuucuugggucggaugacugaguuguuga 
  UAGCCA GGAUGACUUGCCGGc                              g
  |||||| |||||||||||||||                              c
  aucggu ucuacugaacggccg                              c
gc      g               gccggcagcuaggcccagacaaguaggggu 

>sbi-MIR169h (-40.70)   [sbi-miR169h:1-21]

--          U   U      gcuauaugccugagagccugucucuu 
  UAGCCAAGGA GAC UGCCUA                          g
  |||||||||| ||| ||||||                           
  aucgguuccu cug acggau                          g
uc          u   u      auacgagucguguauguuuaaauggu 

>sbi-MIR169j (-65.70)   [sbi-miR169j:3-23]

-            ---U          c        ------       cccuguccgggaacgu 
 ugUAGCCAAGGA    GACUUGCCGG cgaucgau      gccucau                c
 ||||||||||||    |||||||||| ||||||||      |||||||                a
 acaucgguuucu    uuggacggcc gcuagcug      cggagug                u
c            cuuc          a        cuacgc       ucaaacguaguguacg 

>sbi-MIR169k (-47.05)   [sbi-miR169k:1-21]

--C          -            ccucaaauuug    g   u ua 
   AGCCAAGGAU GACUUGCCGGcu           aagc ucg c  a
   |||||||||| ||||||||||||           |||| ||| |   
   ucgguuccug cugaacggcuga           uucg agu g  g
aca          u            uucaaaaauaa    g   c uc 

>sbi-MIR169l (-49.00)   [sbi-miR169l:4-24]

uga          U    U       -u  -     gc      --au  g 
   UAGCCAAGGA GACU GCCUGug  cc uuugu  cgaagg    ca a
   |||||||||| |||| |||||||  || |||||  ||||||    ||  
   aucgguuccu cuga cggauac  gg agaua  guuucc    gu a
-cg          -    -       uu  u     ga      gagu  a 

>sbi-MIR169m (-42.10)   [sbi-miR169m:1-21]

---          U    U       uccucucuaaaggaucagcaa 
   UAGCCAAGGA GACU GCCUAua                     a
   |||||||||| |||| |||||||                     u
   aucgguuccu cuga cggguau                     a
ccg          -    -       acucuggugaucuucggaguu 

>sbi-MIR169n (-43.70)   [sbi-miR169n:3-23]

-   -         U    U     uauccucuaugaaggaucagca 
 ggU AGCCAAGGA GACU GCCUA                      a
 ||| ||||||||| |||| |||||                      a
 ccg ucgguuccu cuga cgggu                      u
u   a         -    -     acucuggugaguuucggagcua 

>sbi-MIR171g (-36.60)   [sbi-miR171g:57-77]

--        a         c    aua         aa 
  uauuggug gguucaauc gaug   gguuuuaca  c
  |||||||| ||||||||| ||||   |||||||||   
  AUAACCGC CCGAGUUAG cuau   cuaaaaugu  a
CU        G         U    -ga         cg 

>sbi-MIR171h (-51.50)   [sbi-miR171h:59-79]

--            c          ag         auuu 
  gguauuggcgcg cucaauccga  gcguggcug    g
  |||||||||||| ||||||||||  |||||||||    g
  CUAUAACUGCGC GAGUUAGGuu  uguaccgac    c
cu            C          cu         ggua 

>sbi-MIR171i (-42.30)   [sbi-miR171i:68-88]

---        u       c        u aa     ag g  gaa 
   guguuggc cggcuca ucagaagc g  auagu  u au   u
   |||||||| ||||||| |||||||| |  |||||  | ||    
   UAUAACCG GCCGAGU AGUcuuug c  uaucg  g ua   c
uuC        U       U        - gg     au g  aau 

>sbi-MIR171j (-46.30)   [sbi-miR171j:83-103]

gc   c          a           aucaucagaugauguauuuuaaauu 
  gag gauauuggug gguucaaucag                         u
  ||| |||||||||| |||||||||||                         a
  uuc CUAUAACCGC CCGAGUUAGUc                         c
-c   a          G           agggaccccuaaguggaaguacgua 

>sbi-MIR171k (-48.10)   [sbi-miR171k:62-82]

--  g                       a  cuu c     aaa 
  cg gauauuggcgcgguucaaucaga ag   g gcucc   g
  || ||||||||||||||||||||||| ||   | |||||    
  gc CUAUAACCGUGCCGAGUUAGUuu uc   c cgggg   c
cu  a                       c  -ac u     acc 

>sbi-MIR172d (-36.50)   [sbi-miR172d:68-87]

---u                a  ----a -  a g         aaa 
    ggcaucaucaagauuc ca     c cc u gauccaaau   c
    |||||||||||||||| ||     | || | |||||||||   c
    UCGUAGUAGUUCUAAG gu     g gg a cuagguuua   a
uACG                A  acgua a  - g         guc 

>sbi-MIR319b (-92.00)   [sbi-miR319b:158-177]

--ga    u            cu   -       u         --ca      g   ac          ac         a   ug   aag 
    gagc cucuucagucca  cua aaauggc guagaguuu    uuagcu ccg  ucauccauuc  cuaccaaga cca  gac   c
    |||| ||||||||||||  ||| ||||||| |||||||||    |||||| |||  ||||||||||  ||||||||| |||  |||   g
    CUCG GGGAAGUCAGGU  ggu uuugucg caucucgaa    aaucga ggc  ggugggugag  gaugguucu ggu  uug   a
uuCC    U            -U   a       -         cuaa      g   gc          cc         -   --   gau 

>sbi-MIR390 (-93.10)   [sbi-miR390:3-23]

-  A         G         Cua   aaacac      u          augag                g c      --gc     gca 
 ug AGCUCAGGA GGAUAGCGC   gga      auagau ggagcuagcc     gagaaagagagagaga g agcaga    gagau   u
 || ||||||||| |||||||||   |||      |||||| ||||||||||     |||||||||||||||| | ||||||    |||||    
 ac ucgaguccu ucuaucgcg   ucu      uaucug ucuugguugg     cucuuucucuuucucu c ucgucu    cucua   g
c  c         a         aag   ---aac      -          ---aa                a -      aagu     agu 

>sbi-MIR393b (-48.50)   [sbi-miR393b:1-21]

-           C          cacc  -  g  -   -   ug 
 UCCAAAGGGAU GCAUUGAUCu    ug cc cc cgc cgc  c
 ||||||||||| ||||||||||    || || || ||| |||  g
 agguuucccua cgugacuaga    ac gg gg gcg gcg  c
a           a          ----  a  -  a   c   uc 

>sbi-MIR394b (-28.80)   [sbi-miR394b:2-21]

---c      U C           uugccgaucgau   g 
    UUGGCA U UGUCCACCUCC            cuu c
    |||||| | |||||||||||            ||| a
    aaccgu a acggguggagg            gaa g
aggu      c u           ---uuuuuuuuu   a 

>sbi-MIR395c (-41.00)   [sbi-miR395c:51-71]

--         a              --      ggcu 
  gaguucccu caagcacuucacga  gaccuu    u
  ||||||||| ||||||||||||||  ||||||     
  CUCAAGGGG GUUUGUGAAGUGuu  uuggga    a
uu         -              ug      aaua 

>sbi-MIR395g (-35.40)   [sbi-miR395g:48-68]

--       aa              accuu     aa 
  guucccu  aagcacuucacgag     ggcuu  u
  |||||||  ||||||||||||||     |||||   
  CAAGGGG  UUUGUGAAGUGuuc     ccggg  a
CU       -G              -----     aa 

>sbi-MIR395h (-39.70)   [sbi-miR395h:61-81]

--       u              gag     -au  --      
  guucccu caagcacuucacau   gcacc   uc  aaacu 
  ||||||| ||||||||||||||   |||||   ||  |||| c
  CAAGGGG GUUUGUGAAGUGua   ugugg   ag  uuugu 
CU       -              --a     auu  aa      

>sbi-MIR395i (-45.30)   [sbi-miR395i:77-97]

--       g            a      ----------       aua   ug 
  guucccu caaacacuucac agcuag          accauau   gua  c
  ||||||| |||||||||||| ||||||          |||||||   |||   
  CAAGGGG GUUUGUGAAGUG ucgauc          uggugua   cgu  c
CU       -            a      cauugaccua       aca   uc 

>sbi-MIR395j (-43.00)   [sbi-miR395j:67-87]

--       u              gaag   uu   au      g 
  guucccu caagcacuucacau    cuc  ugc  uauauu g
  ||||||| ||||||||||||||    |||  |||  ||||||  
  CAAGGGG GUUUGUGAAGUGua    gag  acg  auguag c
CU       -              acca   uu   --      g 

>sbi-MIR395k (-34.30)   [sbi-miR395k:60-80]

--     c                gaagcuucacauuggc 
  guucc uucaagcacuucacau                a
  ||||| ||||||||||||||||                g
  CAAGG AGGUUUGUGAAGUGua                a
CU     -                accagaguucugaugu 

>sbi-MIR395l (-39.50)   [sbi-miR395l:64-84]

--       u             ugga      -u   -u   g 
  guucccu caagcacuucaca    gcauua  uug  cuu g
  ||||||| |||||||||||||    ||||||  |||  ||| a
  CAAGGGG GUUCGUGAAGUGu    cguagu  aau  gaa g
CU       -             --ua      uu   uc   a 

>sbi-MIR396d (-42.90)   [sbi-miR396d:1-22]

C    CA                g   u   uc   u  ucuu   uu 
 UCCA  GGCUUUCUUGAACUGu aac cga  gcg gc    agc  g
 ||||  |||||||||||||||| ||| |||  ||| ||    |||   
 aggu  cugaaagaacuuggua uug guu  cgc cg    ucg  c
a    uc                g   u   -u   u  -cuc   uu 

>sbi-MIR396e (-87.01)   [sbi-miR396e:2-23]

-      CA                g   ucguggggguagaaaccuugcuggguuugguucccaugucggauggaaugcuuggcuccucccag 
 uUUCCA  GGCUUUCUUGAACUGu aac                                                                 c
 ||||||  |||||||||||||||| |||                                                                  
 aaaggu  ccgaaagaacuuggua uug                                                                 g
c      ac                g   uccaucucggccggcucgcuucgcucuuuggggcguuaaguuaagugagugccggccccuucuua 

>sbi-MIR397 (-68.00)   [sbi-miR397:1-21]

UC                A      a c        ca    u   u 
  AUUGAGUGCAGCGUUG UGagcc g uggccggc  gccg gcg c
  |||||||||||||||| |||||| | ||||||||  |||| ||| c
  uaacucacgucgcggc acucgg c accggccg  cggc cgc g
-u                c      - -        --    -   c 

>sbi-MIR399j (-45.20)   [sbi-miR399j:71-91]

---  u           c     ugaa   c     ga  agcuu   a 
   ag gcgguucuccu uggca    cga ggcug  gc     gcc c
   || ||||||||||| |||||    ||| |||||  ||     |||  
   UC CGUUAAGAGGA ACCGU    guu ccggc  cg     cgg a
ccG  C           A     --uc   c     ac  --gcu   u 

>sbi-MIR408 (-91.60)   [sbi-miR408:184-204]

--a      c       a   u   auggggccaucaacaacaaaauuuccaauuuccguuugcuugcccacaaaauggagggacuugucaggagagguauca 
   caggga gaggcag gca ggg                                                                              g
   |||||| ||||||| ||| |||                                                                               
   GUCCCU CUCCGUC CGU Ccc                                                                              g
uCG      U       A   -   cuccuucguuguugugguccuguggucgacucgagagaguccgguagugguaaaguggucccuccguggaagagagac 

>sbi-MIR437a (-53.10)   [sbi-miR437a:168-188]

--                ugu   a                uauauaa      cua        ccaaguuuacagaaauauauauaaugacaucu 
  aagucaaacuucucua   uuu acuaaguuuauagaaa       caacau   gaauacca                                a
  ||||||||||||||||   ||| ||||||||||||||||       ||||||   ||||||||                                g
  UUCAGUUUGAAGAGAU   AAA ugauuuagauauuuuu       guugua   uuuguggu                                a
ga                -UG   c                --ccacg      --a        uuaauuauagaacucucacgugaacgaacaua 

>sbi-MIR437b (-56.40)   [sbi-miR437b:151-171]

---                        ug     c      a         auacaauacuaaauaaaagcauuaucaagacauau 
   ucaaacuucucuaauuuugaucaa  uuaua aaaaau uauuagcau                                   u
   ||||||||||||||||||||||||  ||||| |||||| |||||||||                                    
   AGUUUGAAGAGAUUGAAAcugguu  aauau uuuuua gugguugua                                   u
UUC                        ca     c      c         gacuuuguaguuuaauaaaguaauguagaugguac 

>sbi-MIR437c (-39.10)   [sbi-miR437c:155-175]

--             ua         aau      cuaacaauuuauauagguugacaacaaacgauugacaucaauagauuuauuau 
  gucaaacuucuuu  aauuuugau   caauau                                                     g
  |||||||||||||  |||||||||   ||||||                                                     a
  CAGUUUGAAGAGA  UUGAAAcua   guuaua                                                     a
UU             --         agu      aauacuuuuauauaguagaauuacuuuucuuagcauauaauauuuuuuuacca 

>sbi-MIR437d (-38.50)   [sbi-miR437d:114-134]

--       u           --cgaa         uauuaacaucuauaucuauacaagauaaaugaa 
  aagucaa cuucucuaacu      gaguuuaua                                 c
  ||||||| |||||||||||      |||||||||                                  
  UUCAGUU GAAGAGAUUGA      uucaaauau                                 c
gg       U           AAuugg         ccuuuuacgugguuauaaauguuguaguguaau 

>sbi-MIR437e (-19.50)   [sbi-miR437e:81-101]

----      --a              cauug  u    uacuaaaucaauua 
    cagauu   cugauuuugaucaa     uc gaaa              g
    ||||||   ||||||||||||||     || ||||               
    GUUUGA   GAUUGAAAcugguu     ag cuuu              a
UUCA      AGA              -caaa  u    uuauauauaauugu 

>sbi-MIR437f (-57.81)   [sbi-miR437f:152-172]

---                      aaa    c         a a      c   u      ccaaauaaaugcacu   aa     a 
   agucaaacuucucuaacuuuga   aagu uguagaaaa u uauuaa auc acaaua               auc  gacau u
   ||||||||||||||||||||||   |||| ||||||||| | |||||| ||| ||||||               |||  ||||| u
   UCAGUUUGAAGAGAUUGAAAcu   uuca auaucuuuu a gugguu uag uguugu               uag  uugua u
gaU                      -gg    a         c c      c   u      uuaaucaaaguaauu   -g     c 

>sbi-MIR437g (-66.96)   [sbi-miR437g:154-174]

--c                              -       a au   c    g     gu      -aaaug     ucaagacauau 
   agucaaacuuuucuaacuuugacuaaguuu uagagaa u  guu acgu uacaa  ucaaau      cacua           u
   |||||||||||||||||||||||||||||| ||||||| |  ||| |||| |||||  ||||||      |||||            
   UCAGUUUGAAGAGAUUGAAAcugguucaaa aucuuuu a  uag ugua auguu  aguuug      guggu           u
gaU                              u       a cg   u    g     gu      aucaaa     uuaagagauac 

>sbi-MIR437i (-63.80)   [sbi-miR437i:150-170]

--                      c      c      guuauauuaacaucuucaguaccaaauaaauguacuaucaagacauu 
  gucaaacuucuuuaacuuugac aaguuu uagaaa                                               u
  |||||||||||||||||||||| |||||| ||||||                                                
  CAGUUUGAAGAGAUUGAAAcug uucaaa aucuuu                                               g
UU                      u      u      uuacgugguaauagaugugguaguuaaucaaaacaaucuagguggua 

>sbi-MIR437j (-65.54)   [sbi-miR437j:152-172]

--                        a    -a           ccaauaguuucaacgucaaauauguuucauuagauucuccaa 
  gucaaacuucucuaacuuugacca guuu  uagaaaaugca                                          g
  |||||||||||||||||||||||| ||||  |||||||||||                                          a
  CAGUUUGAAGAGAUUGAAAcuggu caaa  guuuuuuaugu                                          a
UU                        a    aa           aauuguagauguucauguuuauuuacacgauaguucuguaua 

>sbi-MIR437k (-59.30)   [sbi-miR437k:150-170]

--au                         ac  a          cac    aauaacaucagcuaguuugauuaauucuccauaaa 
    gucaaacuucucuaacuuugaccaa  uu uagaaaaaua   caac                                   a
    |||||||||||||||||||||||||  || ||||||||||   ||||                                    
    CAGUUUGAAGAGAUUGAAAcugguu  aa aucuuuuuau   guug                                   u
gaUU                         ca  a          aca    aagauguuuaaguuuauuuacgugauuauucugua 

>sbi-MIR437l (-39.00)   [sbi-miR437l:150-170]

--          g     a   a    a   a          cacc    --g  --aa  cc     a    a      -   ucca 
  gucaaacuuu uuaac uug ccaa uuu uagaaaaaug    aaca   ac    ca  aaauu guuu auuaaa uuu    u
  |||||||||| ||||| ||| |||| ||| ||||||||||    ||||   ||    ||  ||||| |||| |||||| |||     
  CAGUUUGAAG GAUUG AAc gguu aaa aucuuuuuau    uugu   ug    gu  uuuaa cgag uaguuu gaa    a
UU          A     A   c    c   a          auaa    aga  aaga  uu     -    a      c   uaac 

>sbi-MIR437m (-41.24)   [sbi-miR437m:152-172]

----        ca         --aaa      ac       augcacc     ---    aa  uc    ua   -   uuaa     c 
    gucaaacu  ucuaacuuu     caaguu  uagaaaa       aacau   cuag  ua  aaau  gcu uca    auuuu c
    ||||||||  |||||||||     ||||||  |||||||       |||||   ||||  ||  ||||  ||| |||    |||||  
    CAGUUUGA  AGAUUGAAA     guucaa  aucuuuu       uugua   gauc  au  uuug  uga ggu    uaaag a
gaUU        AG         aacug      aa       aauauaa     uau    aa  ua    ug   u   ucug     c 

>sbi-MIR437n (-53.60)   [sbi-miR437n:160-180]

--    -     c    c                a       -  c  c     -     c   uacaaaaugaaaugaauuucguaaaaucu 
  aagu aaauu ucuc aacuuugaccaaguuu uagaaaa ua ac aacau ggcaa auc                             a
  |||| ||||| |||| |||||||||||||||| ||||||| || || ||||| ||||| |||                              
  UUCA UUUGA AGAG UUGAAAuugguucaaa aucuuuu au ug uugua ucguu ugg                             u
ua    G     -    A                c       u  a  a     g     a   uuuauuaacgugauaguucuuauaaguuu 

>sbi-MIR437o (-38.41)   [sbi-miR437o:153-173]

--     --      a        - a         gaaaaaugcaccauccucuacaacaucaaauuaguuucauuaaauucucuaug 
  aaguc  acuuuu uaacuuug c agguuuuua                                                     a
  |||||  |||||| |||||||| | |||||||||                                                      
  UUCAG  UGAAGA AUUGAAAc g uucaaaaau                                                     a
ga     UU      G        u a         auuuuuuauauaauugucgauguccaaguguauuuacgugaugguucuguaua 

>sbi-MIR437p (-66.50)   [sbi-miR437p:166-186]

--au                ac             a   c    auau        c     uac     ----------    g      c   --a  c 
    gucaaacuucucuaac  ugaccgaguuugu gga aaau    acuagcau uacaa   caaau          aaau cacuau aag   gu a
    ||||||||||||||||  ||||||||||||| ||| ||||    |||||||| |||||   |||||          |||| |||||| |||   ||  
    CAGUUUGAAGAGAUUG  Acugguucaaaua cuu uuua    ugguugug auguu   guuua          uuua guggua uuu   ca a
gaUU                AA             a   u    --cc        u     uua     aucaaaguag    g      c   aaa  g 

>sbi-MIR437q (-45.61)   [sbi-miR437q:138-158]

-gu      c      g      -ga   g  a       aauauaauuaacaucuacgaugccaaaugaaugcaucauc 
   agucaa cuucuc aacuuu   caa uu auagaaa                                        a
   |||||| |||||| ||||||   ||| || |||||||                                         
   UCAGUU GAAGAG UUGAAA   guu ag uaucuuu                                        a
gaU      U      A      aug   g  a       cuccgucgcuacugauguucugaugcuguuguuuaaauaa 

>sbi-MIR437r (-54.60)   [sbi-miR437r:158-178]

---   a          u      a      c        a  ------     a     uac  c       u     u    aa    c   g 
   agu aaacuucucu auuuug ccaagu uauagaaa au      guacu auauu   aa aucaaau aguuu auuc  uuca cau c
   ||| |||||||||| |||||| |||||| |||||||| ||      ||||| |||||   || ||||||| ||||| ||||  |||| ||| a
   UCA UUUGAAGAGA UGAAAc gguuca auaucuuu ua      cgugg uauga   uu ugguuua ucaag ugag  aggu gug a
gaU   G          U      c      a        a  uguaac     a     -ca  a       u     -    --    u   u 

>sbi-MIR437s (-62.20)   [sbi-miR437s:154-174]

--                      u  ag    a       acacucaaacaucuagaauaucagaugaguuucauuagauucuuuau 
  aagucaaacuucuuuaacuuug cc  guuu uagaaaa                                               g
  |||||||||||||||||||||| ||  |||| |||||||                                                
  UUCAGUUUGAAGAGAUUGAAAc gg  cgaa aucuuuu                                               c
ga                      u  ca    a       auaugacuguaaauguucaaguuuauuuaagagauaguuuuauauaa 

>sbi-MIR437t (-63.24)   [sbi-miR437t:150-170]

--         g    u             ----       a   u       a a         ----------ga uc     uc       
  gucaaacuu ucua cuuugaccaaguu    gaaaaau uau aacaucu c auaucaaau            a  cacua  gaaaua 
  ||||||||| |||| |||||||||||||    ||||||| ||| ||||||| | |||||||||            |  |||||  ||||| u
  CAGUUUGAA AGAU GAAAcugguucaa    cuuuuua gug uuguaga g uguaguuug            u  guggu  cuuuau 
UU         G    U             auau       c   u       c a         auauaaguaacg gu     -c       

>sbi-MIR437u (-38.80)   [sbi-miR437u:144-164]

---      --        g g  ug u   uu          ua    c     caagcugaaauaagugcacuaucaagaca 
   uuaaac  cucuaacu u ac  a uuu  uggaaaaaua  uuaa aucug                             u
   ||||||  |||||||| | ||  | |||  ||||||||||  |||| |||||                              
   AGUUUG  GAGAUUGA A ug  u aaa  aucuuuuuau  gguu uagau                             g
UUC      AA        A g  gu c   -u          gc    a     acuguaguuuaaucaaaguaauuuaagag 

>sbi-MIR437v (-28.10)   [sbi-miR437v:94-114]

--         a  uuca       auaucauggagcauuugaugaaacugcuuugaua 
  gucaaacuu cu    cugacuu                                  u
  ||||||||| ||    |||||||                                  u
  CAGUUUGAA GA    GAUUGAA                                  g
UU         -  ----       Acagguucaaauaucuuuuuacguaguuguagau 

>sbi-MIR437w (-41.20)   [sbi-miR437w:153-173]

----    uc        a            a        ugcauc   -   uccaac   aaauu   a   -u     u u cg    a 
    uaaa  ucucuaau uuuaccaaguuu uagaaaaa      aac auu      auc     agu uca  uaaau c c  ugaa u
    ||||  |||||||| |||||||||||| ||||||||      ||| |||      |||     ||| |||  ||||| | |  |||| a
    GUUU  AGAGAUUG AAgugguucaaa aucuuuuu      uug uaa      uag     uca agu  auuua g g  acuu u
UUCA    GA        A            a        ---uuu   a   ---uuu   -augu   -   uc     c u au    a 

>sbi-MIR529 (-54.70)   [sbi-miR529:96-115]

              a          ac   guaca       -  aucuc      cu uua 
gggagaagagagag guacagccuu  cau     cacacuc ca     aacagu  c   u
|||||||||||||| ||||||||||  |||     ||||||| ||     ||||||  |    
uCUUCUUCUCUCUC CAUGUCggaa  gua     gugugag gu     uugucg  g   a
              C          --   -----       u  --cca      uc uau 

>sbi-MIR821a (-134.30)   [sbi-miR821a:20-40]

          c  cuaaa     C  C  C   A        a    g          c             a  c    u     a                                            g        u 
uaaaugauuu ag     aAAGU AU AA AUA AAGUUGua aacu gucaagaucu caauuuuuauuuu gu auuu uucau ugacaaaguaauaguaacauuguucauaaauuuuacauaucucu auauaguu c
|||||||||| ||     ||||| || || ||| |||||||| |||| |||||||||| ||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| a
auuuacuaaa uc     uuuca ua uu uau uucaacau uuga uaguucuaga guugaaaauaaaa ca uaaa aagua gcuguuucauuaucauuguaacaaguauuuaaaauguauagaga uauaucaa u
          a  aacua     a  c  a   g        g    g          u             c  a    u     g                                            g        a 

>sbi-MIR821b (-113.70)   [sbi-miR821b:20-40]

uaaaugauuucaga            G    UA            c g           cac  u               g       a   a a     g            ca      a        a   u   a   u 
              ugaaaAAGUUAU AACA  AAAGUUGuagaa u auuaagaucua   cu uuauuuuggucauuu uucaucc aug a ugaua uaacauuguuca  aaauuu uauaucuc cuc uau guu a
              |||||||||||| ||||  |||||||||||| | |||||||||||   || ||||||||||||||| ||||||| ||| | ||||| ||||||||||||  |||||| |||||||| ||| ||| ||| u
              acuuuuucaaua uugu  uuucaauaucuu a uaguucuagau   ga aauaaaaccaguaaa aaguagg uau u acuau auuguaacaagu  uuuaaa auguagag gag aua caa a
--------------            g    ug            c g           auu  u               a       c   c c     g            -a      -        a   u   c   a 

>sbi-MIR821c (-141.90)   [sbi-miR821c:20-40]

             cuaaa        C  C   A        g    g          c             a       u     a  a                   g                     g        u 
uaaaugauuuuag     aAAGUCAU AA AUA AAGUUGua aacu gucaagaucu uaauuuuuauuuu gucauuu uucau ug caaaguaauaguaacauug ucauaaauuuuacauaucucu auauaguu c
|||||||||||||     |||||||| || ||| |||||||| |||| |||||||||| ||||||||||||| ||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||| |||||||| a
auuuacuaaaauc     uuucagua uu uau uucaacau uuga uaguucuaga guugaaaauaaga caguaaa aagua gc guuucauuaucauuguaac aguauuuaaaauguauagaga uauaucaa u
             cacua        c  a   g        g    g          u             c       u     g  c                   a                     g        a 

>sbi-MIR821d (-101.70)   [sbi-miR821d:4-24]

-----------     G    C    AC            a          c  a              uc    auc       u          c  c            u      a   c   g       u 
           aaaAA UCAU AACA  AAAGUUGuagaa ucauuaauau ua aacuuuuauuuugg  auuu   cauucga aaagugauag aa auuguucauaaa uuuaca auc cuc uaugguu c
           ||||| |||| ||||  |||||||||||| |||||||||| || ||||||||||||||  ||||   ||||||| |||||||||| || |||||||||||| |||||| ||| ||| ||||||| a
           uuuuu agua uugu  uuucaacaucuu aguaguuaua au uugaaaauaaaauc  uaaa   guaggcu uuucacuauc uu uaacaaguguuu aaaugu uag gag auaucaa u
cuaaaguaagc     a    c    au            g          u  g              ca    caa       c          a  a            u      a   a   a       a 

>sbi-MIR821e (-133.50)   [sbi-miR821e:4-24]

----------------aa        C  A   A        g    a          c c           a       u     a                                            g        u 
                  aAAGUCAU AA AUA AAGUUGua aacu gucaagaucu c auuuuuauuuu gucauuu uucau ugacaaaguaauaguaacauuguucauaaauuuuacauaucucu auauaguu a
                  |||||||| || ||| |||||||| |||| |||||||||| | ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| u
                  uuucggua uu uau uucaacau uuga uaguucuaga g ugaaaauaaaa uaguaaa aagua acuguuucauuaucauuguaacaaguauuuaaaauguauagaga uauaucaa g
auuuacuaaaaucaacua        c  a   g        g    g          u u           c       u     g                                            g        a 

>sbi-MIR1432 (-99.90)   [sbi-miR1432:61-81]

gauaggacauaggaggcgagagggacgacgagccguugguuugu    --   c          -    A           G  g          -----   u  a 
                                            gggu  gug guccuaugCU CAGG GAGAUGACACC AC ucggacggac     cgg cg u
                                            ||||  ||| |||||||||| |||| ||||||||||| || ||||||||||     ||| || c
                                            cccg  cau caggauacga gucc cucuacugugg ug agccugccug     gcc gc c
------------------------acuuuugucccucuacauga    ac   u          a    g           g  a          ucugu   -  g 

>sbi-MIR1435a (-79.78)   [sbi-miR1435a:62-81]

guuguauuaaugcacccaucauauuauu      ----     a   u u      a     c                   U   aauu     ---aauuu      -  a               gu    -auaaaug  a  ccaa  a   aaca 
                            uacucu    guucc aau a agguua uuuag uuUUUCUUAAGUCAAACUU UCu    uugac        uagaaa au uauuaacaucuacaa  ucaa        ca ua    cu cca    u
                            ||||||    ||||| ||| | |||||| ||||| ||||||||||||||||||| |||    |||||        |||||| || |||||||||||||||  ||||        || ||    || |||    a
                            augagg    caagg uua u uccagu aaauc aaaaaggauucaguuugaa aga    aacug        gucuuu ua guaguuguagauguu  aguu        gu au    ga ggu    u
-----------------------acuuc      uauc     c   c c      g     -                   u   ----     guucaaau      c  c               gu    caaacaaa  a  uuag  -   acuu 

>sbi-MIR1435b (-72.10)   [sbi-miR1435b:62-81]

cuauagaauuauaaaauaaucuuuuac  u       acc       -----       c  a    UUC          C     --aaa    aacaa     a             caaa       gc   -----      aa   u 
                           uc cuccauc   gaauaaa     ucaauuc ua aguU   UUAAGUCAAA CUUUU     guuu     aauuu uagaaaagagcac    auuuaug  acu     aguaua  aug u
                           || |||||||   |||||||     ||||||| || ||||   |||||||||| |||||     ||||     ||||| |||||||||||||    |||||||  |||     ||||||  |||  
                           ag gagguag   uuuauuu     aguuaag au ucaa   aauuuaguuu gaaaa     caaa     uuaaa aucuuuucucgug    uaaauac  ugg     ucguau  uac g
---------------------------  u       gua       aggua       c  c    uaa          u     aaaug    cuaac     c             uuca       ua   uuuag      aa   u 

>sme-mir-2156b (-24.90)   [sme-miR-2156b*:14-35] [sme-miR-2156b:48-70]

-     aacu    -       UU A       AU    au 
 uucau    gaaa AAGGUUU  G GCCGUAA  CAaa  a
 |||||    |||| |||||||  | |||||||  ||||   
 aagua    cuUU UUCCAAA  C CGGCAUU  guuu  a
u     aagu    A       UC C       CC    au 

>sme-mir-753e (-26.80)   [sme-miR-753e*:3-22] [sme-miR-753e:31-53]

----u   -        U           a 
     aAG GCUUGAAU GUGAUCUCAua a
     ||| |||||||| |||||||||||  
     UUC CGAACUUA UACUAGAGUau c
auaaC   U        U           c 

>sme-mir-76 (-27.90)   [sme-miR-76*:13-32] [sme-miR-76:52-73]

---gaua        --      U             g   u    
       aacauuuu  UCAUUC UAAACAAUGAAUA uuu ucc 
       ||||||||  |||||| ||||||||||||| ||| || a
       uuguaaAG  AGUAAG AUUUGUUGCUUau aaa agu 
uuuacga        AG      U             g   c    

>sme-mir-124c-2 (-27.40)   [sme-miR-124c-2*:17-39] [sme-miR-124c:58-78]

     auauu    aa     A   C   U         a    au 
ccauu     caug  GCAUU ACC UGU GUCUUAGAU guuu  u
|||||     ||||  ||||| ||| ||| ||||||||| ||||   
gguaa     guAC  CGUAA UGG GCA CGGAAUuua caaa  a
     --agu    --     G   C   -         -    ac 

>sme-mir-2204 (-11.70)   [sme-miR-2204-5p:4-26] [sme-miR-2204-3p:52-72]

------uac    A    GA    -AA    ACc   cu  ca 
         UGAA UUAG  CGGA   UUAC   aau  ac  a
         |||| ||||  ||||   ||||   |||  ||  c
         AUUU AAUC  GCCU   AAug   uua  ug  a
cuaacccaU    G    AG    ACA    --a   au  ca 

>sme-mir-2e (-32.30)   [sme-miR-2e-5p:14-35] [sme-miR-2e-3p:52-74]

---------u       -    g        --UU     C      u  cca 
          auagguc agau AAACCUAG    GGUUG GAUAUG ug   u
          ||||||| |||| ||||||||    ||||| |||||| ||    
          uauucag ucua UUUGGAUC    UCGAC CUAUac au   u
cuacucuuuu       c    A        UCGU     A      c  aac 

>sme-mir-2206 (-28.54)   [sme-miR-2206-5p:2-21] [sme-miR-2206-3p:59-78]

---c        C  A  -UA        cuucucac      a 
    AGGGCAGG AU GC   AGUGguua        uggaaa u
    |||||||| || ||   ||||||||        |||||| g
    uuCCGUCC UA CG   UCACCAgu        aucuuu g
cauu        -  G  UGG        --uuacua      a 

>sme-mir-753d (-29.80)   [sme-miR-753d-5p:2-22] [sme-miR-753d-3p:34-54]

----uC           U           u 
      AGGGCUUGGAU GUGAUCUCgua a
      ||||||||||| |||||||||||  
      UCUCGAACUUA UACUAGAguau u
uaaaUC           U           u 

>sme-mir-2147d (-31.80)   [sme-miR-2147d-5p:21-42] [sme-miR-2147d-3p:57-77]

u    ----u     u  u     C    AAC     CC    U     ca 
 ugcu     uugga gu aacau GGAA   UCGCA  GUGA AUugu  a
 ||||     ||||| || ||||| ||||   |||||  |||| |||||  c
 acgg     gaccu ca uugUA CCUU   AGCGU  CACU Uaaca  u
-    cuuuu     u  -     C    GUC     --    U     cu 

>sme-mir-2205 (-20.40)   [sme-miR-2205:15-36] [sme-miR-2205*:52-72]

-ccuc ua      uU   UA     U  A    --    a  u 
     u  guugug  GGA  GUGAG AA GCGG  UGAu gu u
     |  ||||||  |||  ||||| || ||||  |||| ||  
     a  uagcAC  CCU  UACUC UU UGUC  acua ca c
uaauu gc      --   UC     U  A    Ua    -  a 

>sme-mir-2f (-20.30)   [sme-miR-2f:5-25] [sme-miR-2f*:41-63]

ggcaA    A   -   A    U     agcu 
     UCUG AGC UGG UGUG UAUga    u
     |||| ||| ||| |||| |||||     
     AGAC UCG ACC ACAC AUacu    u
--UUG    A   U   G    U     auuu 

>sme-mir-2154-2 (-29.30)   [sme-miR-2154:18-41] [sme-miR-2154*:63-83]

-g      uauu     uUC          UU   A      a    aaau 
  agugau    agaau   AGCUGUACAA  GGC UUGUGU ugau    g
  ||||||    |||||   ||||||||||  ||| |||||| ||||     
  ucacua    uuuua   UCGAUAUGUU  CUG AACAca auua    a
aa      --uu     UAU          -U   -      -    caua 

>sme-mir-31b-2 (-22.90)   [sme-miR-31b:3-25] [sme-miR-31b*:42-62]

-  A  C     G    C       A   acu 
 ca GG AAGAU CUGG AUAGCUG uaa   a
 || || ||||| |||| ||||||| |||    
 gU CC UUCUA GACU UAUCGAc auu   u
a  A  U     G    -       c   auu 

>sme-mir-754c-2 (-30.20)   [sme-miR-754c:14-33] [sme-miR-754c-2*:45-68]

-a      - a c       U   -    UU        u 
  uccacc c g auGUUGC UGG GGUA  ACUAUauu a
  |||||| | | ||||||| ||| ||||  ||||||||  
  aggugg g C UAUAACG ACU CUAU  UGAUauaa u
ua      a A -       U   U    UU        u 

>sme-mir-754b-2 (-29.10)   [sme-miR-754b:19-38] [sme-miR-754b*:52-72]

uuauca      - a c          GG    UU C      u 
      uccacc c g auGUUGCUUG  GGUA  A UAuauu a
      |||||| | | ||||||||||  ||||  | ||||||  
      aggugg g c UAUAACGAAC  CUAU  U Auauaa u
--uaua      a a -          UA    UU A      u 

>sme-mir-2160-2 (-31.14)   [sme-miR-2160:16-37] [sme-miR-2160-2*:58-77]

c        uaa  a   - G        U          guacua 
 uuugugau   au UGG C CUUAUGUG AGAACCGGuu      u
 ||||||||   || ||| | |||||||| ||||||||||       
 aaacacua   ua aCC G GAAUGUAC UUUUGGucaa      a
a        uga  a   U A        U          auuuuu 

>sme-mir-2202 (-22.40)   [sme-miR-2202:17-39] [sme-miR-2202*:58-79]

ua      au      U   C    A   U         cuu  uua 
  aguugg  uugaua GCG AAAA GAA AUUAAUCGA   ug   a
  ||||||  |||||| ||| |||| ||| |||||||||   ||    
  ucaacu  aauuAU CGC UUUU CUU UAAUUAGcu   ac   u
--      --      U   A    C   -         --c  uug 

>sme-mir-2203 (-8.40)   [sme-miR-2203*:9-30] [sme-miR-2203:51-70]

a         -GAA  -  UAA      UC     caaa 
 aaaauuuAC    GG CU   UGAUUA  AUuua    c
 |||||||||    || ||   ||||||  |||||     
 uuUUGAAUG    CU GA   ACUAau  uaaau    c
-         AUUG  A  ---      --     uaaa 

>sme-mir-2200 (-16.70)   [sme-miR-2200:16-39] [sme-miR-2200*:55-75]

aa    g        U   GA  -   AUUA         auu 
  uuuu auacaguu GAA  CG AUU    UUGAUUAUU   g
  |||| |||||||| |||  || |||    |||||||||    
  aaaa uaUGUCGA CUU  GC UAA    AAuuaguag   u
ua    a        -   AA  C   --AA         agu 

>sme-mir-2201 (-19.80)   [sme-miR-2201*:15-37] [sme-miR-2201:50-71]

-------------cau      g uca    A  GA   AGC       Gac 
                gaugcu c   AGUU CU  AGA   UGAUGCU   a
                |||||| |   |||| ||  |||   |||||||    
                CUACGA G   UCGA GA  UCU   AUuauga   a
uaauuuuucgauaagc      G ---    A  AG   ---       aga 

>sme-bantam-c-2 (-25.90)   [sme-bantam-c*:7-28] [sme-bantam-c:39-60]

-   uu            U               
 agu  aAAGGCUUUCAU AUGAUUUUAAaaug 
 |||  |||||||||||| ||||||||||||| u
 uca  UUUUCGAAAGUA UACUAGAGUuuuau 
g   -u            U               

>sme-mir-31b-3 (-22.90)   [sme-miR-31b:3-25] [sme-miR-31b*:42-62]

-  A  C     G    C       A   acu 
 ca GG AAGAU CUGG AUAGCUG uaa   a
 || || ||||| |||| ||||||| |||    
 gU CC UUCUA GACU UAUCGAc auu   u
a  A  U     G    -       c   auu 

>cel-mir-2207 (-32.60)   [cel-miR-2207:1-23] [cel-miR-2207*:63-84]

--    A      A            a  u  g  gga   gg 
  UGUG AUUGAG CUGUGUAUAAGa ug aa ga   gag  g
  |||| |||||| |||||||||||| || || ||   |||   
  ACAC UAACUC GACACGUAuucu gc uu cu   cuu  c
AC    G      G            -  -  g  aug   gc 

>cel-mir-2208a (-23.20)   [cel-miR-2208a:1-23] [cel-miR-2208a*:40-61]

--         C   U   A      --a  a 
  AAGUGUACC GAA CUG UAUCCu   uc u
  ||||||||| ||| ||| ||||||   ||  
  UUCAUAUGG CUU GAC GUAgga   ag c
AC         U   U   -      aaa  u 

>cel-mir-2208b (-27.10)   [cel-miR-2208b-5p:1-23] [cel-miR-2208b-3p:40-61]

--         CG      A      aucac 
  AAGUGUACC  GAUCUG UAUCCu     c
  |||||||||  |||||| ||||||      
  UUCACAUGG  UUAGAC GUAgga     a
AC         UU      -      gaaaa 

>cel-mir-2209a (-25.10)   [cel-miR-2209a*:1-23] [cel-miR-2209a:43-64]

--G         A  CU    C   -   guau 
   AGUGUAACC CU  UCUC UUC cga    u
   ||||||||| ||  |||| ||| |||     
   UCACAUUGG GA  AGAG Aag gcu    g
ACA         C  CU    -   a   auua 

>cel-mir-2209c (-22.60)   [cel-miR-2209c*:1-23] [cel-miR-2209c:42-64]

--G          CAC     G     aaacu 
   AGUGUAACCG   GUCUU UUUca     c
   ||||||||||   ||||| |||||      
   UCACAUUGGC   CAGAA Aaggu     a
ACA          CAC     A     auaua 

>cel-mir-2210 (-17.10)   [cel-miR-2210:1-23] [cel-miR-2210*:40-61]

--A  C   U     AAU       u    a 
   GG AGA CAAUC   UUUUAGG uuau u
   || ||| |||||   ||||||| ||||  
   CC UCU GUUAG   GAAAUcc aaua a
CAC  A   C     -CU       u    a 

>cel-mir-2211 (-22.10)   [cel-miR-2211*:1-24] [cel-miR-2211:38-60]

--C    A    UUC  C       --      
   CUCC UCUA   UC AUCUGAC  Gacgu 
   |||| ||||   || |||||||  |||| c
   GAGG AGAU   AG UGGACUg  cugcc 
AAA    -    UUA  A       cc      

>cel-mir-2212 (-17.82)   [cel-miR-2212:1-23] [cel-miR-2212*:39-60]

--    AG    UAG   G      caagc 
  UGGC  AUCA   GCU ACUUUG     a
  ||||  ||||   ||| ||||||     u
  ACCG  UAGU   CGG UGAAac     u
CU    AA    UUA   -      auauu 

>cel-mir-2213 (-25.30)   [cel-miR-2213*:1-22] [cel-miR-2213:34-55]

--U     -A     C         c u 
   GGCGG  CUCUU ACAGUUUGA c c
   |||||  ||||| ||||||||| | g
   CCGUC  GAGAA UGUCGAAcu g g
AAU     AG     -         a a 

>cel-mir-2214 (-20.39)   [cel-miR-2214*:1-21] [cel-miR-2214:40-64]

--AU      C  ----A         uuaucuu 
    UCGGUC GG     GUCAAUGGG       u
    |||||| ||     |||||||||        
    GGCCAG UC     CAGUUACcc       c
UUGC      U  AACAA         cccaaaa 

>cel-mir-2215 (-35.26)   [cel-miR-2215*:1-22] [cel-miR-2215:44-65]

--                 G      uaguuc 
  ACAGCACGUGUUACGAU CUCCgu      g
  ||||||||||||||||| ||||||      g
  UGUUGUGCGCGAUGCUA GAggca      a
UU                 A      uuuuug 

>cel-mir-2216 (-32.90)   [cel-miR-2216:1-21] [cel-miR-2216*:37-57]

--             C          ca 
  GCACAUUUUAAGU GGUAGGCguc  a
  ||||||||||||| ||||||||||  u
  CGUGUAAAAUUCA CUAUCcguag  u
UC             U          uu 

>cel-mir-1832b (-44.10)   [cel-miR-1832b*:1-23] [cel-miR-1832b:45-67]

--             G           ----   a 
  CAGCGAAUCGCUC GCCCACUUUug    uga c
  ||||||||||||| |||||||||||    ||| c
  GUCGCUUAGCGAG CGGGUGAaaac    acu a
UA             A           ugcg   a 

>cel-mir-2217 (-23.20)   [cel-miR-2217*:1-24] [cel-miR-2217:40-62]

-- AG  UG    GUC  U        a au 
  C  AG  GGCA   GG GUCGAUCu c  c
  |  ||  ||||   || |||||||| |  a
  G  UU  CCGU   CC CAGCUgga g  u
UG CU  GU    GUU  -        c cu 

>cel-mir-2209b (-20.00)   [cel-miR-2209b*:1-22] [cel-miR-2209b:42-63]

---  UG    AA   U    C   -   aaac 
   AG  UAAC  CUC UCUC UUC cga    c
   ||  ||||  ||| |||| ||| |||     
   UC  GUUG  GAG AGAG Aag gcu    a
ACU  GU    GC   U    -   a   aaua 

>cel-mir-2218a (-27.70)   [cel-miR-2218a:1-23] [cel-miR-2218a*:38-60]

--         AGU   AA        aaa 
  CAAACUACA   UUU  GCCUCAcc   a
  |||||||||   |||  ||||||||    
  GUUUGAUGU   AAG  CGGAgugg   g
AU         GAU   AC        guu 

>cel-mir-2218b (-24.80)   [cel-miR-2218b:1-23] [cel-miR-2218b*:45-66]

--AG             UC      -ca    uu 
    ACUACAAACUACA  AUUUUC   ucuc  u
    |||||||||||||  ||||||   ||||   
    UGAUGUUUGAUGU  UAAAag   ggag  g
AGAG             -U      auc    ug 

>cel-mir-2219 (-45.01)   [cel-miR-2219*:1-23] [cel-miR-2219:54-76]

--A                A         -------   uu 
   CAGCUUUCUCUCGCAC UCGUCagcu       aga  u
   |||||||||||||||| |||||||||       |||  g
   GUCGAAAGGGAGCGUG AGCagucga       ucu  a
GAA                A         aaguaug   ca 

>cel-mir-2220 (-20.40)   [cel-miR-2220*:1-22] [cel-miR-2220:37-58]

--     A        U   U     uuc 
  GUAAG CCAUAAAC AUU AUCaa   a
  ||||| |||||||| ||| |||||    
  CAUUC GGUGUUUG UAA Uaguu   u
GA     A        U   C     uac 

>cel-mir-2221 (-42.46)   [cel-miR-2221:72-93]

-     uuauucuuac      cgaa                 cau      a     aua 
 uacau          uguccu    uacaaacuggcgguuug   ucacuu cauuu   a
 |||||          ||||||    |||||||||||||||||   |||||| |||||   g
 gugua          auaggg    auguuUGAUCGCCAGAC   AGUGAA guaaa   a
a     -----uuuua      -aaa                 CAU      C     aac 

>cbr-mir-73b (-35.10)   [cbr-miR-73b:58-80]

c   -  aaaau      c     u   -    ga   uc   u  auc 
 guc cc     uccgau cggcu cca cauc  gcc  agc ag   c
 ||| ||     |||||| ||||| ||| ||||  |||  ||| ||    
 cag gg     agguUA GCUGA GGU GUAG  CGG  Ucg uc   a
-   a  -aaau      C     C   U    AA   --   u  aau 

>cbr-mir-238 (-38.51)   [cbr-miR-238:74-95]

u       a  c   ugaauau      u      u c     u   a     uaua     g 
 ucuucuu uc uca       gacugu ugggug c uugga gua aaagc    aaucu u
 ||||||| || |||       |||||| |||||| | ||||| ||| |||||    |||||  
 agaagaa ag agu       cuggua ACCUAC G AGCCU CAU UUUcg    uuaga u
-       c  c   -------      C      C U     -   G     ----     a 

>cbr-mir-76 (-42.60)   [cbr-miR-76:59-78]

     u  uu  -   a           -     u       -   cca 
auccc ca  cg cca uuaggacuuca caaca gcgaaua cca   c
||||| ||  || ||| ||||||||||| ||||| ||||||| |||   u
ugggg gu  gc ggu aaUUCUGAAGU GUUGU UGCUUau ggu   u
     c  cu  a   -           A     -       a   auc 

>cbr-mir-35c-1 (-58.00)   [cbr-miR-35c:68-88]

-       aua uc             cg            a u      uu  aag 
 gaaguug   g  uggaucggaccug  ucaguuuuuauc c gugaua  cc   c
 |||||||   |  |||||||||||||  |||||||||||| | ||||||  ||   a
 cuucagc   c  accuagccuggaC  GGUUAAAAGUGG G CACUau  gg   u
a       aag uu             AU            - C      -u  caa 

>cbr-mir-35e (-46.40)   [cbr-miR-35e:69-89]

-      uu a    - ---ga          c       c ug  g a      uu  gaa 
 uaaucu  g gguc c     gucggaccug ccugauu u  cu c gugaua  uc   c
 ||||||  | |||| |     |||||||||| ||||||| |  || | ||||||  ||   g
 guuagg  c ccag g     cagccuggaC GGAUUAA A  GG G CACUau  ag   g
c      -- -    u auccc          A       C GU  - C      -u  auc 

>cbr-mir-35c-2 (-41.40)   [cbr-miR-35c:54-74]

-  c    u    cg   c   c    g        uu  aag 
 ga ucgg ccug  cca uuu cacc cggugaua  cc   c
 || |||| ||||  ||| ||| |||| ||||||||  ||   a
 cu agcc ggaC  GGU AAA GUGG GCCACUau  gg   a
c  -    u    AU   U   A    -        -u  caa 

>cbr-mir-35d (-54.10)   [cbr-miR-35d*:17-38] [cbr-miR-35d:55-76]

c      -         C         UG  U        uu  aa 
 ccaguu ccggacacu GCAGGUUUU  CU CGGUGAUa  cg  g
 |||||| ||||||||| |||||||||  || ||||||||  ||   
 ggucaa ggccuguGA CGUUUAAAA  GG GCCACUau  gc  a
-      u         A         GU  -        -u  cg 

>cbr-mir-90b (-37.70)   [cbr-miR-90b*:24-46] [cbr-miR-90b:66-89]

      --ugc    -cc        C   C    --     U        ---     c 
agaucc     agca   auuucaag GGC UUCA  ACGAC AUAUCAAC   cgaau c
||||||     ||||   |||||||| ||| ||||  ||||| ||||||||   |||||  
uuuagg     ucgu   uggaguUC CUG AAGU  UGUUG UAUAGUug   gcuua a
      cuuuu    uuu        A   U    UU     -        agc     a 

>cbr-mir-235b (-41.30)   [cbr-miR-235b*:17-40] [cbr-miR-235b:57-77]

----------ucugaaauc      c     C      U     U      c  ua 
                   uuggau AGGCU UGGUCA GUGCA AUAUUg gc  u
                   |||||| ||||| |||||| ||||| |||||| ||  a
                   gaucug UCCGG ACCAGU CACGU UAUaau cg  u
agacuuugacagaaugaaa      c     U      U     -      -  ua 

>cbr-mir-56 (-44.70)   [cbr-miR-56*:27-51] [cbr-miR-56:72-93]

-    -a   a  au     ucu            UC    UC   UU     uc    caa 
 ugga  cgg ac  caguu   guucuCAGGGGA  CAGU  CGG  GUGCC  aucu   u
 ||||  ||| ||  |||||   ||||||||||||  ||||  |||  |||||  ||||    
 acuu  gcc ug  gucag   uaaGAGUCUCCU  GUUA  GCC  CACgg  uaga   a
g    ac   a  -c     --c            UC    -U   --     --    ccc 

>cbr-mir-54a (-55.50)   [cbr-miR-54a:26-47] [cbr-miR-54a*:65-87]

     -----     -aa  --            G         CAA   U     -c  ua 
cagga     cgucu   gc  cgauccuuggcU GGAUAUGAG   ACG GUACa  ga  c
|||||     |||||   ||  |||||||||||| |||||||||   ||| |||||  ||  u
guccu     gcgga   cg  gcuaggaacCGA UCUAUACUC   UGC CAUgu  cu  u
     ucgug     aaa  cu            G         UUA   C     cc  ua 

>cbr-mir-237 (-45.40)   [cbr-miR-237:23-45] [cbr-miR-237*:60-79]

u       ---------    --u     g       UG GAA     C    U  u  aa 
 cuugaaa         acca   guuug uggUCCC  A   UGCUC GACA CU cg  g
 |||||||         ||||   ||||| |||||||  |   ||||| |||| || ||   
 gaacuuu         uggu   uaggc accAGGG  U   ACGAG CUGU ga gc  u
-       uuuuaauau    uuu     g       GU ACC     -    C  u  ga 

>cbr-mir-1822 (-37.12)   [cbr-miR-1822:59-81]

    -agaa   u       c       -  aac  -ua      gcacu 
gucu     agg ccgagag cuauccc gg   gc   ucgguu     u
||||     ||| ||||||| ||||||| ||   ||   ||||||     u
caga     uuc gguUCUC GAUAGGG CC   CG   AGCcaa     u
    aagac   -       A       G  ---  UCG      aaaac 

>cbr-mir-1834 (-31.86)   [cbr-miR-1834:57-76]

u     --u   aauacguu         gc          -   uuu 
 gaaau   uuc        ggcuuuuug  uggucucaua ccg   a
 |||||   |||        |||||||||  |||||||||| |||    
 cuuua   gag        CCGAAGAAC  ACUAGAGUau ggu   g
a     cuu   -aaaaaaC         UU          a   cau 

>cbr-mir-35b-1 (-55.60)   [cbr-miR-35b:55-77]

-                 ug    cu   g a      uu   ac 
 uuggaucggaccucugc  guuu  gcc c gugaua  cca  g
 |||||||||||||||||  ||||  ||| | ||||||  |||   
 gaccuagccugGAGAUG  CAAA  UGG G CACUau  ggu  u
a                 GU    AG   - C      -u   ga 

>cbr-mir-35b-2 (-42.30)   [cbr-miR-35b:65-87]

      agucu      a        ug    c u  g        uu - aa 
ucugau     ggaucg aucuuugc  guuu c cu cggugaua  c c  a
||||||     |||||| ||||||||  |||| | || ||||||||  | |  u
aggcug     ccuagc uaGAGAUG  CAAA G GG GCCACUau  g g  g
      ----c      c        GU    A U  -        uc u aa 

>cbr-mir-35b-3 (-53.30)   [cbr-miR-35b:59-81]

u     ----            c    a     u  g        ---c   a 
 ggucu    ggaucggaccuc accg uuuuu cu cggugaua    ucc a
 |||||    |||||||||||| |||| ||||| || ||||||||    |||  
 ccaga    ccuagccugGAG UGGU AAAAG GG GCCACUau    agg u
a     cuga            A    C     U  -        uagc   g 

>cbr-mir-35b-4 (-58.80)   [cbr-miR-35b:60-82]

-        ---  -              a     u  g        c  caa 
 auggucug   gg ucggaccuuugcca uuuuc cc cggugaua uc   u
 ||||||||   || |||||||||||||| ||||| || |||||||| ||   g
 uaccagac   cc agccugGAGAUGGU AAAAG GG GCCACUau ag   c
c        uga  g              C     U  -        u  cag 

>cbr-mir-35b-5 (-54.70)   [cbr-miR-35b:68-90]

-    a c  a   ----             cg ug c    u  a        cu   aa 
 auga g gu guu    ugggucggaccuc  c  g uuuu cc cggugaua  cca  g
 |||| | || |||    |||||||||||||  |  | |||| || ||||||||  |||  c
 uacu c ca cag    accuagccugGAG  G  C AAAG GG GCCACUau  ggu  a
u    a -  c   gcuc             AU GU A    U  -        -u   ga 

>cbr-mir-35b-6 (-62.70)   [cbr-miR-35b:58-80]

                cg ug     uc  g        uu   aa 
gacuggaucggaccuc  c  guuuu  cc cggugaua  ccg  g
||||||||||||||||  |  |||||  || ||||||||  |||  c
cugaccuagccugGAG  G  CAAAA  GG GCCACUau  ggu  a
                AU GU     GU  -        -u   ga 

>cbr-mir-35b-7 (-50.80)   [cbr-miR-35b:59-81]

-       ----          cg  gu     u  g        - uc aa 
 ggucugg    gucggaccuc  cu  uuuuc cc cggugaua c  c  a
 |||||||    ||||||||||  ||  ||||| || |||||||| |  |  g
 ccaggcu    uagccugGAG  GG  AAAAG GG GCCACUau g  g  a
a       gacu          AU  UC     U  -        u cu aa 

>cbr-mir-35b-8 (-63.20)   [cbr-miR-35b:63-85]

   a   ----              cg ug     uc  g        uu   aa 
cga ggu    cuggaucggaccuc  c  guuuu  cc cggugaua  ccg  g
||| |||    ||||||||||||||  |  |||||  || ||||||||  |||  c
gcu cca    gaccuagccugGAG  G  CAAAA  GG GCCACUau  ggu  a
   a   ugcu              AU GU     GU  -        -u   ga 

>cbr-mir-35b-9 (-50.80)   [cbr-miR-35b:59-81]

-       ----          cg  gu     u  g        - uc aa 
 ggucugg    gucggaccuc  cu  uuuuc cc cggugaua c  c  a
 |||||||    ||||||||||  ||  ||||| || |||||||| |  |  g
 ccaggcu    uagccugGAG  GG  AAAAG GG GCCACUau g  g  a
a       gacu          AU  UC     U  -        u cu aa 

>cbr-mir-35b-10 (-61.60)   [cbr-miR-35b:63-85]

---c  a - u              cg ug     uc  g        uu   aa 
    ga g g cuggaucggaccuc  c  guuuu  cc cggugaua  ccg  g
    || | | ||||||||||||||  |  |||||  || ||||||||  |||  c
    cu c c gaccuagccugGAG  G  CAAAA  GG GCCACUau  ggu  a
gcua  a a u              AU GU     GU  -        -u   ga 

>cbr-mir-35b-11 (-57.50)   [cbr-miR-35b:65-87]

c   a   ----        ag    cg ug      u   g        uu   aa 
 cga ggu    cugggucg  ccuc  c  guuuuu acc cggugaua  cca  u
 ||| |||    ||||||||  ||||  |  |||||| ||| ||||||||  |||  a
 gcu cca    gaccuagc  gGAG  G  CAAAAG UGG GCCACUau  ggu  a
-   a   ugcu        cu    AU GU      -   -        -u   aa 

>cbr-mir-35b-12 (-52.10)   [cbr-miR-35b:62-84]

a         ----          cg  gu     u  g        - uc aa 
 auggucugg    gucggaccuc  cu  uuuuc cc cggugaua c  c  a
 |||||||||    ||||||||||  ||  ||||| || |||||||| |  |  g
 uaccaggcu    uagccugGAG  GG  AAAAG GG GCCACUau g  g  a
-         gacu          AU  UC     U  -        u cu aa 

>cbr-mir-35b-13 (-49.30)   [cbr-miR-35b:54-76]

-                 ug  a   u  g  a     --    g 
 cugggucggaccucugc  gu uuc cu cg ugaua  uuuu a
 |||||||||||||||||  || ||| || || |||||  ||||  
 gaccuagccugGAGAUG  CA AAG GG GC ACUau  gaaa a
u                 GU  A   U  -  C     uc    a 

>cbr-mir-65 (-43.20)   [cbr-miR-65:15-36] [cbr-miR-65*:58-80]

-    ----  u      uC           G G  AAU    gc       
 agac    cc caccaa  AUGACACUGAA C GG   GGaa  guaguc 
 ||||    || ||||||  ||||||||||| | ||   ||||  ||||| a
 ucug    gg gugguU  UACUGUGACUU G CC   CCuu  cguuag 
g    agua  c      CA           G G  -AU    aa       

>cbr-mir-1817 (-37.30)   [cbr-miR-1817:14-36]

u   --u        C  C     CC  G         gu   ----aaa     a 
 uca   auuuugag AG CAAUG  AC ACUGUCAUG  cua       auccg u
 |||   |||||||| || |||||  || |||||||||  |||       ||||| a
 agu   uaaagcuc uc guuac  ug ugacaguac  gau       uaggu g
a   uuu        a  u     -a  g         uu   agccuaa     c 

>cbr-mir-2222-1 (-51.70)   [cbr-miR-2222:71-93]

c       g      uaccagu            cc   -     uc           - a 
 augaaug ucaggu       cgaccugugcug  ucu uucuu  gugauauuuuu c c
 ||||||| ||||||       ||||||||||||  ||| |||||  ||||||||||| | a
 uauuuac agucca       gcuggaCACGAC  AGA AAGAA  CACUAUaaaaa g g
-       -      ----uuu            CU   C     --           u c 

>cbr-mir-2227 (-38.31)   [cbr-miR-2227:65-85]

u     gccacgu     ----    gc        -u      c    u    -c      
 ucuuc       gucuc    caau  ucuucacc  cuauuu cacu ccac  caagu 
 |||||       |||||    ||||  ||||||||  |||||| |||| ||||  |||| a
 agaag       cagag    guua  agaaGUGG  GAUGAA GUGA GGUg  guuua 
g     -------     uuuu    -a        UC      U    C    aa      

>cbr-mir-41b (-46.41)   [cbr-miR-41b:63-82]

  -     u    g          u        gua      caaaacca 
gc ggauc cucu gccuuggagg uucucauc   gugaua        a
|| ||||| |||| |||||||||| ||||||||   ||||||        a
cg ccuag gagg uggaaCCUUC AAGAGUGG   CACUau        a
  u     -    a          U        -GC      agcauacc 

>cbr-mir-2222-2 (-51.70)   [cbr-miR-2222:71-93]

c       g      uaccagu            cc   -     uc           - a 
 augaaug ucaggu       cgaccugugcug  ucu uucuu  gugauauuuuu c c
 ||||||| ||||||       ||||||||||||  ||| |||||  ||||||||||| | a
 uauuuac agucca       gcuggaCACGAC  AGA AAGAA  CACUAUaaaaa g g
-       -      ----uuu            CU   C     --           u c 

>cbr-mir-64b (-46.81)   [cbr-miR-64b:71-90]

   guuauucuuu    aggc      uuc    a   cca    u       au   ag 
ucc          ccga    cccgcc   caug cac   agcg gucugga  gac  a
|||          ||||    ||||||   |||| |||   |||| |||||||  |||   
agg          gguu    gggcgg   GUAC GUG   UCGC CAGGCcu  cug  a
   -aaaaucccu    --ga      caa    G   UAG    -       -c   gu 

>cbr-mir-2214 (-20.83)   [cbr-miR-2214:9-29]

u  uucu   -U    C -----  A         uuaucau 
 ca    cAC  CGGU C     GG GUCAAUGGG       u
 ||    |||  |||| |     || |||||||||       c
 gu    gug  gcca g     cc cgguuaccc       u
u  -uuu   uu    c uucaa  a         uuccaac 

>cbr-mir-2223 (-34.50)   [cbr-miR-2223:20-40]

     uauuuuc   a           C   U      A  aa     caaau     c  a 
uccaa       ggc auuUUUGUACU AUG AAGGUG Ca  gauag     uugac gu u
|||||       ||| ||||||||||| ||| |||||| ||  |||||     ||||| ||  
agguu       ccg uaagaacguga uac uucuac gu  cuauu     aacug ca c
     ---uuuu   g           c   -      -  -a     -----     -  c 

>cbr-mir-2224 (-35.40)   [cbr-miR-2224:62-82]

           -----------        ---g  a     c     u  a    uu      aga 
uuuuuuuuuga           gguucgag    cu ucaag ccaaa ga uacc  ucaacu   a
|||||||||||           ||||||||    || ||||| ||||| || ||||  ||||||   u
agagaaaaacu           ucgagcuu    ga aGUUU GGUUU CU AUGG  AGUUga   c
           uccaguacuag        agca  c     U     -  A    --      aac 

>cbr-mir-54b (-39.41)   [cbr-miR-54b:63-85]

      -------   c     u         -  c    c    uuuu     cga  u 
gagcac       gag ugauc uugacucga ac ugga aucg    guaca   ag c
||||||       ||| ||||| ||||||||| || |||| ||||    |||||   || a
uucgug       uuc gcuag aacuGAGCU UG ACCU UAGU    CAUgu   uc a
      uaaaaau   c     c         A  U    -    -GCC     -cg  g 

>cbr-mir-54c (-34.00)   [cbr-miR-54c:59-78]

cguga c          -c     c     uauc  u  ua     caaa 
     g cgauccuuga  uggaa uugga    gu cg  uacag    a
     | ||||||||||  ||||| |||||    || ||  |||||     
     c gcuaggaacu  aCCUU AACCU    CA GC  AUguc    u
--gug u          aa     C     ---U  U  CC     cuga 

>cbr-mir-54d (-40.83)   [cbr-miR-54d:68-89]

-      ---cua  ug       a  a           ga   u u     ugaaucc 
 aaagcg      gg  auccuug cu ggauauaaaaa  acg g guaca       a
 ||||||      ||  ||||||| || |||||||||||  ||| | |||||       g
 uuuugc      cc  uaggaac GA CCUAUAUUUUU  UGC C CAUgu       u
c      uaguug  gu       c  G           -A   - -     ucauaag 

>cbr-mir-2225 (-41.24)   [cbr-miR-2225*:17-37] [cbr-miR-2225:62-82]

a   - ---   u       -      U   UC     G    -   aauucc 
 guc c   cuc cuuuguc ACCGCU CCU  CUUGC CACa ccu      a
 ||| |   ||| ||||||| |||||| |||  ||||| |||| |||       
 cag g   gag ggaauaG UGGCGA GGA  GAACG GUgu gga      g
a   a uua   -       A      C   CA     -    a   aaugau 

>cbr-mir-2226 (-40.42)   [cbr-miR-2226:17-40] [cbr-miR-2226*:61-82]

-    --         u  A   A    GA   A   GC       ccaau 
 ggcu  agacaugcc gc AUG CACA  AGA CUG  AAUGaaa     a
 ||||  ||||||||| || ||| ||||  ||| |||  |||||||     c
 ccga  ucugugcgg CG UAC GUGU  UCU GGC  UUAcuuu     u
a    uc         u  A   C    -G   -   -A       auuca 

>cbr-mir-74b (-55.40)   [cbr-miR-74b*:29-51] [cbr-miR-74b:68-88]

   -    -uucaa   c         u        U   UC  GUUC        aug 
gcu acua      gcc cugccacac uuUGGACU CCU  UC    CCAGCaaa   c
||| ||||      ||| ||||||||| |||||||| |||  ||    ||||||||    
uga uggu      cgg gacggugug aGACCUGA GGA  AG    GGUcguuu   a
   g    uuuuga   c         u        C   UC  -AAC        gac 

>crm-mir-786 (-39.72)   [crm-miR-786:65-87]

a      uuc     -aa  c     a         ac        u   uacaa 
 guaagu   gggac   gu ccaau gagucucgg  agggcauu aca     g
 ||||||   |||||   || ||||| |||||||||  |||||||| |||     a
 uauuua   ccuug   ua gguUA CUUAGAGUC  UCCCGUAA Ugu     u
-      -ca     cac  u     C         GU        -   uuaaa 

>crm-mir-41 (-52.59)   [crm-miR-41:76-95]

      uaaguuua      cc  a                c    g a       accauca 
gaaagg        acaggu  cc ugaccuugguaguuuu cgcc c gugauau       a
||||||        ||||||  || |||||||||||||||| |||| | |||||||        
uuuucc        ugucca  gg gcuggaaCCAUCAAAA GUGG G CACUaua       u
      --------      cu  -                A    - C       gcaaaac 

>crm-mir-40 (-48.40)   [crm-miR-40:74-95]

-     ucuuca    -cu       a            u    g a      -----  -  gc 
 uggua      aacc   gcccgua ccuaguugaugu cauc c gugaua     ug ac  a
 |||||      ||||   ||||||| |||||||||||| |||| | ||||||     || ||   
 acuau      uugg   ugggcgu gGAUCGACUACA GUGG G CACUau     ac ug  u
u     ---uuc    acu       g            U    - C      uccuu  a  ac 

>crm-mir-39 (-40.10)   [crm-miR-39:57-78]

u     -     -     c     u   uuuc      a   aa uuc 
 gagau ccaga gagcc aacug uuc    cccggu aua  c   a
 ||||| ||||| ||||| ||||| |||    |||||| |||  |    
 uucua ggucu cucgG UUGAC AAG    GGGCCA Uau  g   a
-     u     u     A     U   -UAU      C   ca cac 

>crm-mir-77-2 (-24.20)   [crm-miR-77:60-80]

uucaaaauaaaaagagcuguuaguuuggauggcugugcucugaggaaacacggugucauUUCAUCAGGCCAUAGCUG         cg  uc  - ac 
                                                                             UCCaaaacu  uu  cc c  u
                                                                             |||||||||  ||  || |   
                                                                             agguuuugg  aa  gg g  a
-----------------------------------------------------------------------------         ag  uu  c aa 

>crm-mir-49 (-43.10)   [crm-miR-49:66-86]

     uuua      --   a  g   c         ua  au     c     - a 
guaag    gaacaa  ucu cc auc gcaguuucu  ug  gugcu cgagc c a
|||||    ||||||  ||| || ||| |||||||||  ||  ||||| ||||| | c
cguuu    cuuguu  agg gg uaG CGUCGAAGA  AC  CACGA gcuug g a
     -uac      ug   a  -   A         GC  --     A     u u 

>crm-mir-57 (-36.10)   [crm-miR-57:32-55]

u      gaaua      gacug  u    c    C     A  G    G     uu   a 
 aaguuu     ucucau     uu ucgu UACC UGUAG UC AGCU UGUGU  uga g
 ||||||     ||||||     || |||| |||| ||||| || |||| |||||  ||| u
 uucgag     agagua     aa agca gugg acguc ag ucga acaca  acu g
-      -----      ----a  c    a    a     -  a    -     -u   u 

>crm-mir-35a-1 (-32.70)   [crm-miR-35a:52-72]

-  u  c        u   ug  -   c      u   -   cu 
 gc gg uuggaccu ugc  gu uuc cucggu aua uuu  a
 || || |||||||| |||  || ||| |||||| ||| |||   
 cg cc aaccugga GUG  UA AAG GGGCCA Uau aaa  a
c  -  u        C   GU  C   U      C   c   aa 

>crm-mir-35b (-57.80)   [crm-miR-35b:57-77]

                 a ac       ug  u        uu   a 
ucggugggaucggaccu c  ugguuuu  cu cggugaua  uca g
||||||||||||||||| |  |||||||  || ||||||||  |||  
agccacucuagccugga G  ACUAAAA  GG GCCACUau  agu a
                 C GA       GU  -        -u   a 

>crm-mir-35c-1 (-55.20)   [crm-miR-35c:57-77]

     c           a a            g        cu  ga 
ucggu ggaucggaccu c cugguuuucgcu cggugaua  uc  g
||||| ||||||||||| | |||||||||||| ||||||||  ||   
agcca cuuagccugga G GACUAAAAGUGG GCCACUau  ag  a
     c           C G            -        -u  ua 

>crm-mir-35d-1 (-51.20)   [crm-miR-35d:56-76]

a   c           c a            u    c   uu   a 
 ggu ggaucggcccu c cugguuuucgcc cggu aua  uca g
 ||| ||||||||||| | |||||||||||| |||| |||  |||  
 cca cuuagccggga G GACUAAAAGUGG GCCA Uau  agu u
-   c           C A            -    C   -u   a 

>crm-mir-35e-1 (-43.10)   [crm-miR-35e:53-74]

     ---    a      ug     ga       a    accag 
augac   ggga ccgugc  guuuc  acucggu auag     a
|||||   |||| ||||||  |||||  ||||||| ||||      
ugcug   cccu gGCAUG  CAAAG  UGGGCCA Uauc     a
     agc    g      GU     -G       C    gaaag 

>crm-mir-35f (-43.13)   [crm-miR-35f:68-89]

  ug  ----cu    gac    a   u  ug     g    u   a    gacuaaa 
au  ca      ugac   ggga cag gc  augcc accu ggu auag       c
||  ||      ||||   |||| ||| ||  ||||| |||| ||| ||||       u
ua  gu      acug   cccu gUC UG  UACGG UGGG CCA Uauc       g
  gu  uauccu    auu    g   U  GU     G    -   C    gaacagu 

>crm-mir-35e-2 (-58.70)   [crm-miR-35e:63-84]

     ga     a      ug     g   u    a      c auau 
cugac  gggga ccgugc  guuuc acc cggu auaggu c    a
|||||  ||||| ||||||  ||||| ||| |||| |||||| |    u
gacug  ccccu gGCAUG  CAAAG UGG GCCA Uaucca g    g
     ag     g      GU     G   -    C      a aaga 

>crm-mir-83 (-31.10)   [crm-miR-83:61-82]

a   a - -a u      a              u  a  u  -  --  - a 
 ggc c c  c cggaaa acugaguuuaugug gu cu ga cg  gc c c
 ||| | |  | |||||| |||||||||||||| || || || ||  || |  
 ccg g g  g gcuuuU UGACUUAAAUAUAC CA GA cu gc  cg g u
-   a a ag u      A              -  C  U  a  aa  a c 

>crm-mir-77-1 (-40.20)   [crm-miR-77:66-86]

a    guaaa    --  u                 cu    g     ac   uca 
 aacu     gagc  ug uaguuuggauggcugug  cuga gaaau  ggc   u
 ||||     ||||  || |||||||||||||||||  |||| |||||  |||   a
 uuga     cuug  ac auuaaaCCUGUCGAUAC  GACU CUUua  cug   a
-    --aag    ua  u                 CG    A     --   uaa 

>crm-mir-232-1 (-37.20)   [crm-miR-232:72-93]

c    u    ugaa   ug -uug       u        uc   -     u   -  aucu 
 gagg aagu    guc  a    ucggauc ccguaguu  gau cauuu auc cu    c
 |||| ||||    |||  |    ||||||| ||||||||  ||| ||||| ||| ||    c
 cuuu uuca    cag  u    agucuaG GGCGUCAA  CUA GUAAA Uag ga    a
-    u    ----   gu cuua       U        UU   C     -   c  aaca 

>crm-mir-228 (-41.40)   [crm-miR-228:17-39]

-   c    -        A    C         A   A   -a  cau 
 auc uauc uuguucgc AUGG ACUGCAUGA UUC CGG  ug   u
 ||| |||| |||||||| |||| ||||||||| ||| |||  ||    
 uag gugg gacaggcg uacc uggcguacu agg gcc  ac   g
a   a    u        a    a         -   c   ag  agc 

>crm-mir-90 (-42.94)   [crm-miR-90:65-87]

u    -----       -ac      c         -    u  c     -  auauac 
 guuu     gggccuc   uucgag gguauucaa cgac au ucaac cg      a
 ||||     |||||||   |||||| ||||||||| |||| || ||||| ||       
 caaa     cccggag   aaguUC CCGUAAGUU GUUG UA AGUug gc      u
a    ugauc       cuc      C         U    -  U     a  caacca 

>crm-let-7 (-49.82)   [crm-let-7:27-48]

     c  -ucaaca    gc              U  G            ga ucu 
gcggc gg       cugu  gucuggUGAGGUAG AG UUGUAUAGUUua  a   u
||||| ||       ||||  |||||||||||||| || ||||||||||||  |    
cgucg cu       gaca  uagaccacuccauc uu aacguaucaagu  u   a
     a  cuucuaa    --              u  g            gg ucc 

>crm-mir-238 (-49.20)   [crm-miR-238:77-96]

-    aacgu       ugugau             a  -    c   a       --    cgu 
 aguc     ggaccac      accauuugggugg ca cgga gua aaagcua  ugcc   g
 ||||     |||||||      ||||||||||||| || |||| ||| |||||||  ||||    
 uuag     uuuggug      ugguaaaCUUACC GU GCCU CAU UUUcgau  augg   g
g    ---gu       ---ugu             -  A    -   G       uu    auu 

>crm-mir-75 (-36.20)   [crm-miR-75:58-78]

-     uu -    g            aua     a    c g   au 
 augca  g auga uugaagucgguu   agcuu aaua a aac  a
 |||||  | |||| ||||||||||||   ||||| |||| | |||   
 uacgu  c uacu gaCUUCAGCCAA   UCGAA UUau u uug  c
a     uu a    a            CCA     A    - g   cc 

>crm-mir-74a (-50.40)   [crm-miR-74a:74-94]

u   cg    c   ggaa     cg             u    c    uc     -  a     
 gac  aaga gcu    aaggu  acacguuuggacu ccgu ucuu  ccagc ug uauu 
 |||  |||| |||    |||||  ||||||||||||| |||| ||||  ||||| || ||| g
 cug  uucu cga    uucca  uguguaGACCUGA GGUA AGAA  GGUcg ac auag 
a   --    -   --ac     ca             C    A    -C     u  g     

>crm-mir-74b (-49.02)   [crm-miR-74b:57-77]

c   -           a      u   ca    uc      aaacu 
 agc ccgccacacau ugggcu ccu  ucuu  ccagcg     a
 ||| ||||||||||| |||||| |||  ||||  ||||||     c
 ucg ggcggugugua AUCUGA GGA  AGAA  GGUcgc     u
-   u           C      C   AC    -C      auuaa 

>crm-mir-73 (-46.29)   [crm-miR-73:66-88]

-   c    --    -  u  a           u  -     aa   uc   uaucgaa 
 cag gaga  gguc cc ca acgacugagcu cc acguc  gcc  agc       u
 ||| ||||  |||| || || ||||||||||| || |||||  |||  |||        
 guc cuuu  ccag gg gu uguUGACUUGA GG UGUAG  CGG  Ucg       g
a   -    aa    a  c  a           C  A     AA   --   uuaaaaa 

>crm-mir-76 (-41.80)   [crm-miR-76:55-74]

-    --  ----     u           -      u      ccu    c 
 cccg  uc    caccu uuaggacuuca cgacaa cgaaua   ucca a
 ||||  ||    ||||| ||||||||||| |||||| ||||||   |||| c
 gggc  ag    guggg aaUUCUGAAGU GUUGUU GCUUau   aggu a
g    ua  uucu     u           A      -      ---    c 

>crm-mir-61 (-45.40)   [crm-miR-61:59-79]

-  guaa      uc               c  cg  u    c  -   a 
 gc    uaucgg  uuccgaguuggguca gg  cu aguc uu ccg c
 ||    ||||||  ||||||||||||||| ||  || |||| || ||| a
 cg    guagcc  agggcuCGACUCGGU CC  GA UCAG aa ggu u
a  ---a      uc               U  AA  -    U  c   a 

>crm-mir-242 (-34.40)   [crm-miR-242:26-45]

-    ---gu     cca         -       U   CCU     U    -  aaac 
 ucga     accaa   cguuaagaa uaUUGCG AGG   UUGCU CGaa ag    a
 ||||     |||||   ||||||||| ||||||| |||   ||||| |||| ||     
 aguu     ugguu   guaguuuuu auaacgc ucc   aacga gcuu uc    c
g    aaaau     uaa         u       c   ucu     c    g  auuu 

>crm-mir-70 (-41.10)   [crm-miR-70:63-86]

a      a  agaac                -u     c      -  aaac 
 ugaacg gg     agcuauaggaauaccg  ugaug auuaca cu    a
 |||||| ||     ||||||||||||||||  ||||| |||||| ||    u
 acuugc cc     uugaUAUCCUUGUGGU  ACUGC UAAUgu ga    u
a      -  ----a                UU     A      a  aagu 

>crm-mir-249 (-43.70)   [crm-miR-249:59-80]

u       acg             a        u    gc      uau 
 guuuucu   ugacuagcaacgc caaaaguu cugu  gacaaa   g
 |||||||   ||||||||||||| |||||||| ||||  ||||||    
 uagaaga   guugauCGUUGCG GUUUUCAG GACA  CUguuu   a
-       -aa             A        -    --      uaa 

>crm-mir-231 (-38.30)   [crm-miR-231:62-84]

a     ---    c    -------u         a     -uc   -         u  cuc 
 aucga   gcac ccga        guuguucug cuguu   cau agcuuauau gu   a
 |||||   |||| ||||        ||||||||| |||||   ||| ||||||||| ||    
 uaguu   cgug gguu        caacaGGAC GACAA   GUG UCGAAUaua cg   a
-     uua    u    uuucuggu         G     CAA   C         -  uaa 

>crm-mir-85 (-42.62)   [crm-miR-85:66-89]

a     c     gaag       c       - c         a     guacu 
 gaaga guucu    ucggagc cgucuuu c aauauuuug aacca     c
 ||||| |||||    ||||||| ||||||| | ||||||||| |||||     a
 cuucu cgaga    agucuCG GCGGAAA G UUAUGAAAC Uuggu     u
-     -     --ag       U       A C         A     aaacg 

>crm-mir-42 (-54.50)   [crm-miR-42:68-88]

c         uc                 uc  uuuu        ----uu    c 
 aaacccuug  ggaccuuuguggauguu  cu    cggugaag      guuc g
 |||||||||  |||||||||||||||||  ||    ||||||||      ||||  
 uuugggagc  ccuggaGACAUCUACAA  GG    GCCACUuc      uaag u
-         -u                 UU  ----        uucuau    u 

>crm-mir-43 (-40.22)   [crm-miR-43:63-85]

-  gc   u     c      a    -     u     u   -   agaga 
 ag  gau cugcc gugaca caag aaacu gugau aug ccu     a
 ||  ||| ||||| |||||| |||| ||||| ||||| ||| |||     u
 uc  cug ggcgg CGCUGU GUUC UUUGA CACUA Uac ggg     g
g  ua   u     a      C    A     -     -   a   aagaa 

>crm-mir-252 (-33.20)   [crm-miR-252:15-35]

-    -  ----        A       U  U  C C      -   cuca 
 gguc uc    uuucaguu UAAGUAG AG GC G AGGUaa cca    a
 |||| ||    |||||||| ||||||| || || | |||||| |||     
 ccag ag    aaaguuaa auucguc uc cg c uccauu ggu    a
g    u  cuau        g       u  -  u a      u   auau 

>crm-mir-355 (-36.54)   [crm-miR-355:29-50]

  ug uauuuaug       -    a    U         -CU           uau 
gu  a        ucauuug ucga uggU UGUUUUAGC   GAGCUAUGUgu   u
||  |        ||||||| |||| |||| |||||||||   |||||||||||    
ca  u        aguaaau ggcu acca acaaaauug   uucgauacaua   g
  gu --uuucca       u    a    u         uuc           cac 

>crm-mir-239b (-30.90)   [crm-miR-239b:17-38]

-      ---ac    a          U C       CU    cu   cu 
 aagaca     uugc auuUUUGUAC G ACAAAAG  CUGa  gcu  g
 ||||||     |||| |||||||||| | |||||||  ||||  |||  a
 uucugu     agcg uaaaaacgug c uguuuuc  gacu  cgg  u
u      cuaua    g          u -       ac    --   ua 

>crm-mir-232-2 (-37.20)   [crm-miR-232:72-93]

c    u    ugaa   ug -uug       u        uc   -     u   -  aucu 
 gagg aagu    guc  a    ucggauc ccguaguu  gau cauuu auc cu    c
 |||| ||||    |||  |    ||||||| ||||||||  ||| ||||| ||| ||    c
 cuuu uuca    cag  u    agucuaG GGCGUCAA  CUA GUAAA Uag ga    a
-    u    ----   gu cuua       U        UU   C     -   c  aaca 

>crm-mir-787 (-44.20)   [crm-miR-787:68-90]

u   ca      ---  u        u     -        -u  u   u  c   --  aau 
 cca  uggaua   ug gggaccag ggaug agggaaac  ag cga cu aca  cu   u
 |||  ||||||   || |||||||| ||||| ||||||||  || ||| || |||  ||    
 ggu  acuugu   ac cccugguc ucuaC UCCUUUUG  UC GCU GA Ugu  ga   u
-   -a      uca  c        -     G        UU  U   C  A   aa  cag 

>crm-mir-34 (-37.00)   [crm-miR-34:15-36]

-    --g   c   -a A       -U   U     G   -  uau 
 ggac   gug ucg  g GGCAGUG  GGU AGCUG UUG ca   u
 ||||   ||| |||  | |||||||  ||| ||||| ||| ||    
 ccug   uac agc  c ccgucac  cca ucggc aac gu   g
a    aug   a   cc a       uu   -     -   a  uaa 

>crm-mir-82 (-36.30)   [crm-miR-82:57-78]

a       -cu      a       c u       g    -   caa 
 aguucuu   agcgac gguuuuc c gugaucu caga gua   a
 |||||||   |||||| ||||||| | ||||||| |||| |||    
 ucaagaa   uuguUG CCGAAAG G UACUAGA GUcu cau   g
-       ccu      A       U C       -    a   aaa 

>crm-mir-233 (-38.80)   [crm-miR-233:61-82]

-  -a     - uc          u   - c        c    u  ca  ag 
 ug  agcgu c  ucugucccgc cau c uguuguuc aaua uc  ac  c
 ||  ||||| |  |||||||||| ||| | |||||||| |||| ||  ||   
 ac  ucgua g  agacaGGGCG GUA G GUAACGAG UUau ag  ug  c
u  cg     u uu          U   C C        -    u  --  ac 

>crm-mir-124 (-46.00)   [crm-miR-124:59-78]

      --      u      a    uga   a       -   c  c 
uccaga  ugucac uggcau cacc   gug cuuuagu gga au u
||||||  |||||| |||||| ||||   ||| ||||||| ||| || c
aggucu  acggug aCCGUA GUGG   CAC GGAAUca ccu ug a
      ua      c      A    -CG   -       a   u  a 

>crm-mir-47 (-45.20)   [crm-miR-47:62-82]

      --    -   ugaga           -a      u      uc  uuc 
gaaaaa  agcc gag     cugaagagagc  uucugu gacagu  ga   c
||||||  |||| |||     |||||||||||  |||||| ||||||  ||    
cuuuuu  ucgg cuc     gaCUUCUCUCG  GAGGUA CUGUca  cu   g
      ga    u   uagug           CG      -      uc  caa 

>crm-mir-790-2 (-37.20)   [crm-miR-790:26-47]

u     -ucaa    c ----u    a   C   G    C  G   A       c      
 ucaaa     gguc c     uuug cug UUG CACU GC AAC CCGCGau uuauc 
 |||||     |||| |     |||| ||| ||| |||| || ||| ||||||| |||| a
 aguuu     ucag g     aagc gac aac gugg cg uug ggcgcua aauag 
a     uucac    a uuugu    g   c   g    c  a   a       -      

>crm-mir-248 (-40.47)   [crm-miR-248:67-88]

   aguauuuuu      --a  uu     u    a     -a  -   u        uag 
gcu         uggcag   ga  acgau agcg uaucc  gc cgu guauucaa   c
|||         ||||||   ||  ||||| |||| |||||  || ||| ||||||||    
uga         accguu   uu  ugcua UCGC AUAGG  CG GCA CAUGaguu   g
   guuagcuuc      aug  uu     C    -     CA  U   -        uac 

>crm-mir-58a (-36.02)   [crm-miR-58a:26-48]

c    -ugau    gccauauc        C    - UU  C        a   ccucc 
 cguu     gcuc        ccauUGCC UACU A  CG AUCUCAUC cuu     a
 ||||     ||||        |||||||| |||| |  || |||||||| |||     g
 gcaa     cgag        gguaacgg auga u  gc uagaguag gaa     u
-    uauau    -----aaa        c    c uu  -        -   uauaa 

>crm-mir-236 (-40.80)   [crm-miR-236:65-87]

  uuu      -c    -         -       uu  a    u   -  g  ua 
uc   ggugac  gaug uccagcguc uuaccug  ca uauu aga cu au  g
||   ||||||  |||| ||||||||| |||||||  || |||| ||| || ||   
ag   uuacug  cuau aggUCGCAG AAUGGAC  GU AUAA Ucu ga ua  c
  uau      uu    u         U       -U  C    -   a  g  cu 

>crm-mir-35a-2 (-46.90)   [crm-miR-35a:54-74]

-  u           u   ug  u      u    u   cu   a 
 gc ggauuggaccu ugc  gu uucacc cggu aua  uca g
 || ||||||||||| |||  || |||||| |||| |||  |||  
 cg ccuaaccugga GUG  UA AAGUGG GCCA Uau  agu u
a  u           C   GU  C      -    C   -u   g 

>crm-mir-35c-2 (-61.60)   [crm-miR-35c:65-85]

-  uauu   ug     ---------         -  a            u        uu  aa 
 cc    auc  gucgg         aucggaccu cc cugauuuucgcu cggugaua  uc  g
 ||    |||  |||||         ||||||||| || |||||||||||| ||||||||  ||   
 gg    uag  cggcc         uagccugga GG GACUAAAAGUGG GCCACUau  ag  a
a  ---u   gu     cuuaccccu         C  -            -        -u  ca 

>crm-mir-230 (-42.30)   [crm-miR-230*:15-36] [crm-miR-230:57-78]

-      --      auA        -    U           ----  u 
 gauguu  guaccg   CUUGGUCG ACAA CUAAUAUUauc    gg u
 ||||||  ||||||   |||||||| |||| |||||||||||    || c
 cuacaa  uauggc   GGACCAGC UGUU GAUUAUGauag    cc u
a      uu      aGA        G    -           aaga  g 

>crm-mir-52-1 (-30.20)   [crm-miR-52:18-41] [crm-miR-52*:58-78]

u   c    cu    u C       C  A   UUC    C    cau 
 acc ucua  accg c ACCCGUA AU UGU   CGUG Uuga   u
 ||| ||||  |||| | ||||||| || |||   |||| ||||    
 ugg ggau  uggc G UGGGUAU UA ACA   GCAC aacu   g
-   c    uc    c C       A  -   -UU    u    cgu 

>crm-mir-55 (-48.70)   [crm-miR-55*:32-52] [crm-miR-55:70-92]

a    -  ag   c  aaa    cau   a             CU  -     ----     c 
 gagu cc  acu gg   gucg   ggg cuCGGCAGAAGCA  UG GGGUA    Uacuu a
 |||| ||  ||| ||   ||||   ||| |||||||||||||  || |||||    |||||  
 uuca gg  uga cc   cagu   ccc GAGUCGUCUUUGU  AU CCCAU    augag c
-    u  cu   -  --a    --c   -             UU  G     auca     a 

>crm-mir-237 (-46.66)   [crm-miR-237:28-50] [crm-miR-237*:67-88]

-      -cccaguu     -c    g    C      A      U       uu  aa 
 guauuc        accgu  uuug uggU CCUGAG AUGCUC GACUGCU  cg  g
 ||||||        |||||  |||| |||| |||||| |||||| |||||||  ||  u
 cauaag        uggca  aaau aCCA GGAUUC UAUGAG CUGACga  gc  a
c      uuuuuucu     uu    g    A      C      -       -c  ac 

>crm-mir-79 (-33.14)   [crm-miR-79*:26-47] [crm-miR-79:71-92]

-   --uaucaa     --aa  uu    u          UC     AA    ---ua   uc 
 gaa        auaga    gu  ccga CUUUGGUGAU  AGCUU  AUGa     gac  a
 |||        |||||    ||  |||| ||||||||||  |||||  ||||     |||  a
 cuu        uaucu    cg  ggcU GAAACCAUUG  UCGAA  UAcu     uug  u
u   uuuuuuuc     aagc  gc    C          GA     -A    ucaga   ua 

>crm-mir-235 (-35.76)   [crm-miR-235*:27-50] [crm-miR-235:69-89]

     uaca    gaaaauca          UU   C  A    U     -  ucag 
augga    aucu        agaucAGGCC  GGC GA UGCA AUAUU gc    u
|||||    ||||        ||||||||||  ||| || |||| ||||| ||    u
uacuu    uaga        ucuaGUCCGG  CCG CU ACGU UAUaa cg    g
     ----    -augaaaa          CC   -  C    -     u  uuaa 

>crm-mir-84 (-41.00)   [crm-miR-84:26-48] [crm-miR-84*:65-86]

u        ---     aca      u           U U    C   C    cac 
 acgaaaca   gucua   gaagca cUGAGGUAGUU G AAUG UGU Gacg   u
 ||||||||   |||||   |||||| ||||||||||| | |||| ||| ||||    
 uguuuugu   cagau   uuuugu GGCUCCGUCAA C UUAC ACA cugu   g
-        uuu     ---      C           - U    U   u    aau 

>crm-mir-60 (-28.60)   [crm-miR-60*:17-39] [crm-miR-60:56-77]

a     ------ u   u    AG        -   A     A   a   au 
 aaccg      c ugu cuug  CUAGAAAG GUG CAUAA AUC ugu  a
 |||||      | ||| ||||  |||||||| ||| ||||| ||| |||   
 uuggc      g aca gaaC  GAUCUUUU CAC GUAUU Uag gca  a
-     uauuua u   -    CA        A   -     A   c   ac 

>crm-mir-48 (-28.80)   [crm-miR-48:13-34] [crm-miR-48*:62-83]

-    cc   u u    G     UC  U     CGauca   uu       
 caua  gga g UGAG UAGGC  AG AGAUG      gag  gugccu 
 ||||  ||| | |||| |||||  || |||||      |||  ||||| c
 guau  ccu C GCUC AUCCG  UC UCUAC      cuc  ugcgga 
u    uu   u C    A     -U  U     -----A   cu       

>crm-mir-1 (-40.50)   [crm-miR-1*:15-35] [crm-miR-1:55-74]

-     --------    ag           C      GC     -    au 
 gcugu        gccg  cugCAUACUUC UUACAU  CCAUa cuau  c
 |||||        ||||  ||||||||||| ||||||  ||||| ||||  a
 cggca        uggc  gaUGUAUGAAG AAUGUA  GGUau ggua  g
u     aaaaguuu    aa           A      -A     a    au 

>crm-mir-72 (-44.20)   [crm-miR-72:21-42] [crm-miR-72*:60-81]

     ------------      --     a  uA    AG    U   AU      a   aa 
ccgua            agacuc  gucaa gc  GGCA  AUGU GGC  AGCUGa ugc  u
|||||            ||||||  ||||| ||  ||||  |||| |||  |||||| |||   
gguau            ucugag  cgguu cG  CCGU  UACA CCG  UCGAcu gcg  u
     cccuauuuuuaa      au     a  CA    CA    -   GC      c   gu 

>crm-mir-81 (-39.40)   [crm-miR-81*:17-37] [crm-miR-81:58-79]

-   c   -   a    uC         CU      G   ---  uaaa 
 ccu gug gcc gcag  GGUUUUCAC  UGAUCU AGa   gc    c
 ||| ||| ||| ||||  |||||||||  |||||| |||   ||     
 gga cac ugg cguU  UCGAAAGUG  ACUAGA Ucu   cg    a
c   -   a   a    GA         CU      G   auu  uaau 

>crm-mir-52-2 (-30.20)   [crm-miR-52:18-41] [crm-miR-52*:58-78]

u   c    cu    u C       C  A   UUC    C    cau 
 acc ucua  accg c ACCCGUA AU UGU   CGUG Uuga   u
 ||| ||||  |||| | ||||||| || |||   |||| ||||    
 ugg ggau  uggc G UGGGUAU UA ACA   GCAC aacu   g
-   c    uc    c C       A  -   -UU    u    cgu 

>crm-mir-246-1 (-42.76)   [crm-miR-246:21-43] [crm-miR-246*:60-79]

a    aaacaaua       A    G     UU            gaa 
 gucc        gaacagc CCUG CCGAU  CAUGUAAUAUcu   a
 ||||        ||||||| |||| |||||  ||||||||||||   a
 uagg        uuugucG GGAU GGCUA  GUACAUUauaga   g
-    -aaaugag       A    G     -U            aaa 

>crm-mir-2 (-35.03)   [crm-miR-2*:17-40] [crm-miR-2:59-81]

       -a   a    C        -     C   U    Uugaauc 
auaguau  cgg aagc CGUCAAAG UGGCU GUG UAUG       u
|||||||  ||| |||| |||||||| ||||| ||| ||||       u
uaucaug  guc uuCG GUAGUUUC ACCGA CAC AUac       g
       aa   c    U        G     -   U    uaaugaa 

>crm-mir-784 (-39.20)   [crm-miR-784*:17-37] [crm-miR-784:55-76]

-        ---u     u     A     CU  C       -  ug   
 acuuugcg    uaccg aUGGC CAAUA  UG AUGUAGa cg  ac 
 ||||||||    ||||| ||||| |||||  || ||||||| ||  | g
 ugaaacgu    auggc UACCG GUUAU  AC UACAUcu gu  uu 
u        ucuu     C     A     CU  A       a  gu   

>crm-mir-45 (-43.07)   [crm-miR-45*:23-43] [crm-miR-45:68-88]

a     --accaaaac      c          -   GU         uaa   cau 
 acugu          gugcca gCUGGAUGUG CUC  UAGUCAUaa   ccu   u
 |||||          |||||| |||||||||| |||  |||||||||   |||   u
 ugaca          cgcggu CGACUUACAC GAG  AUCAGUauu   gga   a
-     aauaucaagc      U          A   --         --c   aug 

>crm-mir-250 (-39.46)   [crm-miR-250*:29-50] [crm-miR-250:71-90]

     -uauucga   uc   --      cc  U    U     C     C  -   acuu 
gcugu        agg  uuc  ggaccg  CC UCAG UGACU GUGAU CG ccg    u
|||||        |||  |||  ||||||  || |||| ||||| ||||| || |||    g
uggua        ucc  aag  ucuggc  GG AGUC ACUGA CACUA gc ggu    a
     uuauuaua   uu   uu      aU  U    C     -     A  a   auau 

>crm-mir-87 (-48.50)   [crm-miR-87*:19-42] [crm-miR-87:64-85]

c   u    cc       -       C     C U    A   -  -    c 
 agg ugug  uuccggc CGCCUGA ACUUU G CUCA CCU cg cugu u
 ||| ||||  ||||||| ||||||| ||||| | |||| ||| || |||| g
 ucc acac  aaggcCG GUGGACU UGAAA C GAGU Gga gc gaua a
-   u    --       U       U     - -    -   u  u    u 

>crm-mir-244 (-44.10)   [crm-miR-244:29-52] [crm-miR-244*:75-94]

c     uuccuu u    uuu      cU         UAC           -   cuu  c 
 uauua      c ccag   cucgau  CUUUGGUUG   AAAGUGGUAUG gca   cu a
 |||||      | ||||   ||||||  |||||||||   ||||||||||| |||   ||  
 auaau      g gguu   gagcua  GAAAUCGGC   UUUCGCCAUac cgu   ga a
c     --uacu u    ucu      aG         --U           u   -cu  u 

>crm-mir-86 (-46.80)   [crm-miR-86:17-39] [crm-miR-86*:61-79]

a  a    ----      -           G   U   A   U    ----     
 cg gucg    gcgccg ucUAAGUGAAU CUU GCC CAG Cuuc    gacc 
 || ||||    |||||| ||||||||||| ||| ||| ||| ||||    ||| a
 gc cagc    ugcggc ggAUUCGCUUA GAA CGG GUC gaag    cugu 
g  a    uuuu      c           -   U   -   c    uaaa     

>crm-mir-44 (-45.66)   [crm-miR-44*:17-37] [crm-miR-44:63-83]

-     gaau      u         -   GU        -   gaauca 
 ugaga    ggccga CUGGAUGUG CUC  UAGUCAUa gac      c
 |||||    |||||| ||||||||| |||  |||||||| |||      a
 acucu    ccgguU GACUUACAC GAG  AUCAGUau cug      g
a     aggu      C         A   --        a   acaaaa 

>crm-mir-50 (-60.12)   [crm-miR-50:17-40] [crm-miR-50*:59-81]

       -        c           G    CUUG      auacu 
cccaccc ccuggccg UGAUAUGUCUG UAUU    GGUUcg     c
||||||| |||||||| ||||||||||| ||||    ||||||     u
ggguggg gggccggC GCUAUGCAGAC AUGA    CCAagc     g
       a        A           G    --AA      aaaaa 

>crm-mir-64c (-52.33)   [crm-miR-64c:27-49] [crm-miR-64c*:68-89]

-     ---uuaacca a   -        a A         C    AA      -   auc 
 auaca          g ggc cucgccga U UGACACUGA GCUU  UAUGGa ccg   u
 |||||          | ||| |||||||| | ||||||||| ||||  |||||| |||    
 uaugu          c ccg gagcggcU A ACUGUGACU CGAA  AUACcu ggc   c
u     uaaucccccg c   u        C A         -    -A      a   ccc 

>crm-mir-64d (-53.80)   [crm-miR-64d:29-51] [crm-miR-64d*:70-91]

   g   u a cc    ugcuu               AA  C      U   -  gaua 
uca agu c g  gccc     gccagcUAUGACACU  AG GUAGCA GGa cc    g
||| ||| | |  ||||     |||||||||||||||  || |||||| ||| ||     
agu ucg g c  uggg     cgguCGGUACUGUGG  UC CAUUGU Ccu gg    a
   g   u c ua    --uuu               AG  -      -   a  gaau 

>crm-mir-67 (-36.00)   [crm-miR-67*:15-37] [crm-miR-67:56-78]

      -au      A    G     -CU      U     gaaac 
uagauu   ucgauc ACUC UUCUG   GGUUGU AUGcu     a
||||||   |||||| |||| |||||   |||||| |||||      
aucuaa   agcuaG UGAG AAGAU   CCAACA Uacga     g
      cuu      A    A     CCU      C     agaaa 

>crm-mir-46 (-41.10)   [crm-miR-46*:26-47] [crm-miR-46:68-88]

-    gaaua      gguaaag           -CG     U      u   uucu 
 aacc     agagga       cugAAGAGAGC   UCUAU GACAGU cgu    a
 ||||     ||||||       |||||||||||   ||||| |||||| |||     
 uugg     uuuccu       gaCUUCUCUCG   AGGUA CUGUca gua    u
u    --aac      ---agua           CUG     -      u   uuca 

>crm-lin-4 (-42.10)   [crm-lin-4:24-43] [crm-lin-4*:63-84]

     cuga     ---   g    -cU   U    C    A       c   - u 
auguu    ugcuu   ucg ccug   CCC GAGA CUCA GUGUGag gca c g
|||||    |||||   ||| ||||   ||| |||| |||| ||||||| ||| |  
uacag    acgag   ggc ggaC   GGG CUCU GGGU CGCAcuu cgu g u
     ----     uuc   a    CAU   U    C    C       -   a u 

>crm-mir-246-2 (-42.76)   [crm-miR-246:21-43] [crm-miR-246*:60-79]

a    aaacaaua       A    G     UU            gaa 
 gucc        gaacagc CCUG CCGAU  CAUGUAAUAUcu   a
 ||||        ||||||| |||| |||||  ||||||||||||   a
 uagg        uuugucG GGAU GGCUA  GUACAUUauaga   g
-    -aaaugag       A    G     -U            aaa 

>crm-mir-247 (-35.70)   [crm-miR-247:62-82]

    ccca     - uu     c       -c  cc     g   -   c  a 
caaa    aucuu c  ccgag agagaau  gc  cuagu acc cac ac g
||||    ||||| |  ||||| |||||||  ||  ||||| ||| ||| ||  
guuu    uggaa g  gguuC UCUCUUA  CG  GAUCA Ugg gug ug u
    cccg     c uu     U       AC  -A     G   a   -  a 

>crm-mir-785 (-41.40)   [crm-miR-785:65-84]

g      - ----       - gu     a         uuu          -  agua 
 aaaccg c    ucuuuuu u  ccguc gcgcagaau   uucgcuuaca cg    a
 |||||| |    ||||||| |  ||||| |||||||||   |||||||||| ||    u
 uuuggu g    agaaaaa a  gguaG UGUGUCUUA   AAGUGAAUgu gc    g
-      a uaau       u ug     C         --U          a  aaau 

>crm-mir-38 (-53.91)   [crm-miR-38:74-95]

-      ug  ugaaa   - -    a             a     g        ugacacau 
 uccgau  gu     gag c caga ccuauaccgguuu acuuc uggugaua        a
 ||||||  ||     ||| | |||| ||||||||||||| ||||| ||||||||        u
 agguua  cg     cuc g gucu ggaUAUGGUCAAA UGAGG GCCACUau        u
a      gu  -----   a c    a             A     -        uucuuaca 

>crm-mir-357 (-44.40)   [crm-miR-357:69-91]

-   a   u     gccuaacag              -u   a    a     gaa   u 
 uca cga gugcu         cggauuccaguaac  cug gcau uacau   guu c
 ||| ||| |||||         ||||||||||||||  ||| |||| |||||   |||  
 agu gcu cacga         gcuUAAGGUCGUUG  GAC CGUA AUgua   caa a
c   -   -     ------aua              CU   -    A     --a   a 

>crm-mir-35g (-51.70)   [crm-miR-35g:68-89]

      ----cu    gac    a  -    ug     g   u         -----   ug 
auugca      ugac   ggga cc gugc  auguu acc cggugauag     gac  a
||||||      ||||   |||| || ||||  ||||| ||| |||||||||     |||   
uagcgu      acug   cccu gg CAUG  UACAA UGG GCCACUauc     uug  a
      uauagu    auu    -  U    GU     G   -         gaaca   cc 

>crm-mir-35d-2 (-46.90)   [crm-miR-35d:56-76]

u   c         auu a      c     g    c   uu   a 
 ggu ggaucggcc   c cugguu ucgcc cggu aua  uca a
 ||| |||||||||   | |||||| ||||| |||| |||  |||  
 cca ccuagccgg   G GACUAA AGUGG GCCA Uau  agu u
g   c         gaC A      A     -    C   -u   a 

>crm-mir-59 (-41.60)   [crm-miR-59:68-90]

u   c  ----u   ----    ua                -      ag     -  aac   a 
 guu cc     uga    uuca  gaugacaucguccuga aaacga  cgaaa cu   auc g
 ||| ||     |||    ||||  |||||||||||||||| ||||||  ||||| ||   |||  
 uaa gg     acu    aagu  uuacuGUAGUAGGACU UUUGCU  GCUuu ga   uag a
g   u  uuuuu   uaca    ua                A      AA     a  --a   a 

>crm-mir-259 (-31.20)   [crm-miR-259:17-40]

     acgga      A       -U  U    U   U A   aa a 
agccg     acgagu AAUCUCA  CC AAUC GGU G Cac  c c
|||||     |||||| |||||||  || |||| ||| | |||  | a
ucggu     uguuca uuagggu  gg uuag cca c gug  g a
     aaagg      g       uc  u    -   u -   aa g 

>crm-mir-790-1 (-36.90)   [crm-miR-790:26-47]

u     -ucaa    c ----u    a   C   G    C  G   A       c      
 ucgaa     gguc c     uuug cug UUG CACU GC AAC CCGCGau uuauc 
 |||||     |||| |     |||| ||| ||| |||| || ||| ||||||| |||| a
 aguuu     ucag g     aagc gac aac gugg cg uug ggcgcua aauag 
a     uucac    a uuugu    g   c   g    c  a   a       -      

>crm-mir-788 (-33.40)   [crm-miR-788:18-41]

-    -ugaa   u    c  -  C      CU       G     uuca 
 ggcc     acu acgu UC CG UUCUAA  UCCAUUU CAGag    u
 ||||     ||| |||| || || ||||||  ||||||| |||||     
 cugg     uga ugua ag gc aagauu  agguaaa gucuc    c
c    uagua   u    a  u  c      --       g     uuaa 

>crm-mir-253 (-38.80)   [crm-miR-253:59-78]

     -a   u  a     uu    - a   c       -   aacac 
guucg  guu cc cccuu  caca c ccu acuaaca cua     a
|||||  ||| || |||||  |||| | ||| ||||||| |||      
cgagc  uag gg ggGAA  GUGU G GGA UGAUUgu gau     g
     ag   c  c     GG    U C   -       a   aguua 

>crm-mir-245 (-31.52)   [crm-miR-245:59-80]

-      cu     u   -           caa  u   u     uuugc 
 aaagua  caaug cga agagcugcuug   gg acc aauug     a
 ||||||  ||||| ||| |||||||||||   || ||| |||||     c
 uuuugu  guuac guu uCUCGAUGAAC   CC UGG UUAac     a
a      uu     -   a           CUC  C   -     ucuuu 

>crm-mir-356 (-39.70)   [crm-miR-356:57-78]

    ----   au          -    c    u  c       uca   au 
cgcu    cca  ucgauguggu gagc acgu gg gcaaauc   guc  u
||||    |||  |||||||||| |||| |||| || |||||||   |||   
gcga    ggu  agcuaCACCA CUCG UGCG CU UGUUUag   uag  u
    aaac   --          A    U    -  -       ---   cu 

>crm-mir-241 (-36.54)   [crm-miR-241:23-42]

-------caaaaaa   a -   -u  a   A       G       -     -   aaccuc 
              gcg c gug  ca agu GAGGUAG UGCGAGA AAUGa cgg      a
              ||| | |||  || ||| ||||||| ||||||| ||||| |||       
              cgc g cac  gu uca cuucguc acgcucu uuacu gcu      c
uuuuuucaacuaaa   a u   cc  g   a       g       g     u   acuaaa 

>crm-mir-35c-3 (-54.50)   [crm-miR-35c*:19-38] [crm-miR-35c:57-77]

-     c           -  A        A   U        uu  ua 
 ucggu ggaucggaccu cC CUGGUUUU GCU CGGUGaua  uc  g
 ||||| ||||||||||| || |||||||| ||| ||||||||  ||   
 agcua ccuagccugga GG GACUAAAA UGG GCCACUau  ag  a
u     c           C  -        G   -        -u  ua 

>crm-mir-58b (-39.82)   [crm-miR-58b*:24-46] [crm-miR-58b:69-90]

-    -ugau    gccaua         C    AUU  C        a   ccucc 
 cguu     gcuc      uccauUGCC UACU   CG AUCUCAUC cuu     a
 ||||     ||||      ||||||||| ||||   || |||||||| |||     g
 gcaa     cgag      aggUAACGG AUGA   GC UAGAGUag gaa     u
a    uauau    ----aa         C    CUU  -        -   uauaa 

>crm-mir-239a (-38.20)   [crm-miR-239a:18-40] [crm-miR-239a*:58-75]

-      a  uu               CAC      A     c  uga 
 aaucca ga  gcgauuUUUGUACUA   AUAGGU CUGGa ac   g
 |||||| ||  |||||||||||||||   |||||| ||||| ||    
 uuaggu cu  cguuaaaaaCGUGAU   UAUCUA GACcu ug   a
c      -  --               -CU      A     a  uuu 

>crm-mir-71 (-39.09)   [crm-miR-71:30-52] [crm-miR-71*:67-88]

   --     -   --caccaaa   uc  a  a         U         G   u   a 
cgu  gucug uac         cac  ga cg UGAAAGACA GGGUAGUGA ACG cgg g
|||  ||||| |||         |||  || || ||||||||| ||||||||| ||| |||  
gca  uagac gug         gug  cu gC GCUUUUUGU CUUAUCACU Ugc gcu c
   uu     u   uaccauaua   uu  g  C         -         A   u   c 

>crm-mir-80 (-32.50)   [crm-miR-80*:17-34] [crm-miR-80:60-81]

-   -ca   --uu   c  A         --     U  a       -c  c 
 gga   cuc    ucg uc GCUUUCGAC  AUGAU CU aacaaua  gu g
 |||   |||    ||| || |||||||||  ||||| || |||||||  ||  
 ccu   gag    agc aG CGAAAGUUG  UACUA GA Uuguugu  ca a
a   aua   uuuu   a  C         AU     -  G       aa  g 

>crm-mir-63 (-37.70)   [crm-miR-63:30-53] [crm-miR-63*:76-96]

uuc u   acaugu     aa  u   c           --    A     U     - auaaa 
   c cca      cagaa  ca cca uUCUAACUCGU  CGGU GUCAU GUUuc c     c
   | |||      |||||  || ||| |||||||||||  |||| ||||| ||||| |      
   g ggu      gucuu  gu ggu aaGAUUGAGCG  GUCA CAGUA caaag g     c
gaa c   ------     -a  -   a           AA    -     U     u aagga 

>crm-mir-2227 (-44.61)   [crm-miR-2227:60-79]

u      -------------         c         uca   u     c   cacau 
 gcaggc             ggccugaug cgucuuuca   acu ccacu guu     g
 ||||||             ||||||||| |||||||||   ||| ||||| |||      
 cguucg             uuggacuaC GCAGAAAGU   UGA GGUga caa     a
a      aaauucauuuugu         U         -UG   C     -   aaaac 

>crm-mir-2228 (-35.40)   [crm-miR-2228:68-89]

-     g    uuga     -  -u          u    c   c  c u     -    a 
 gaucg ugag    auucc au  uuugugucua uuuc gag ug g ugacu gaaa g
 ||||| ||||    ||||| ||  |||||||||| |||| ||| || | ||||| ||||  
 uuagu auuu    ugagg ug  aagcaCAGAU AAAG CUC AC C ACUga cuuu a
u     -    -gua     c  uu          U    U   U  - U     g    a 

>crm-mir-62 (-25.70)   [crm-miR-62:49-70]

-  c   aguuag           cc      -c     c 
 gg uau      guggguuagau  cauauc  uuccg g
 || |||      |||||||||||  ||||||  ||||| u
 cc aug      CAUUCGAUCUA  GUAUAG  aaggu a
u  -   ----GA           AU      Ua     a 

>crm-mir-2229 (-33.50)   [crm-miR-2229:54-75]

-     --   a     a   uu    -   gg     c  a  cau 
 guugu  uau uguuc cag  ccca cag  cuuuc ac cu   u
 |||||  ||| ||||| |||  |||| |||  ||||| || ||    
 caaca  aua acaaG GUC  GGGU GUC  GAAAG ug ga   g
a     uu   g     G   CU    A   -A     U  c  aga 

>crm-mir-64e (-40.90)   [crm-miR-64e:26-48]

    -  -ccaa    cc     c   U    C   GUA       C   uaauag   a 
acgg ac     agga  ccacc ggc AUGA ACU   ACAUGUC UGG      cag g
|||| ||     ||||  ||||| ||| |||| |||   ||||||| |||      ||| a
uguu ug     uccu  ggugg ucg uacu uga   uguacag acc      guc u
    a  uuaag    cu     -   u    u   -aa       -   ---uaa   u 

>crm-mir-2230 (-39.70)   [crm-miR-2230*:27-47] [crm-miR-2230:67-86]

    caa  ug   aggaag                 C  U   A   auc  u  a 
cacu   uu  agu      aacuucAGUCUGUGAUA UG GGU GCa   gg ac g
||||   ||  |||      ||||||||||||||||| || ||| |||   || ||  
guga   aa  uca      uugaaGUCAGGCACUGU AC CCA Cgu   uc ug u
    ---  gu   --aaag                 A  -   A   ---  -  a 

>crm-mir-2231 (-43.70)   [crm-miR-2231*:26-47] [crm-miR-2231:63-82]

-     -----    u       --               AA    A    U   -  aca 
 uugcu     gauu auguuuu  ggagacugAACGGCA  AACU CAGG AGC ag   u
 |||||     |||| |||||||  |||||||||||||||  |||| |||| ||| ||    
 aaugg     uuga uacgaaa  uuuuugaCUUGCCGU  UUGA GUCC Ucg uc   a
g     aaagc    u       gu               AC    -    C   a  auu 

>crm-mir-64a (-55.10)   [crm-miR-64a:18-39] [crm-miR-64a*:73-94]

c       -       aa   GA     UU      -  U  -   augag     a 
 agaaggc cucgccg  UAU  CACUG  GCGUAG CA Ga cca     acucu c
 ||||||| |||||||  |||  |||||  |||||| || || |||     ||||| a
 ucuuccg gagcggc  AUA  GUGAC  CGCAUC GU cu ggu     ugaga a
-       u       CC   AG     -U      A  -  a   --aag     a 

>crm-mir-66 (-49.30)   [crm-miR-66:29-51] [crm-miR-66*:73-93]

   - -    -gaaaa     caa       CA      A A       A     - -    aa 
ucc c accg      gaaca   agccaug  UGACAC G UUAAAGG UGUGa c acuu  c
||| | ||||      |||||   |||||||  |||||| | ||||||| ||||| | ||||   
agg g uggc      cuugu   ucgguaC  ACUGUG C GAUUUCC ACAcu g ugaa  a
   a a    augagg     ---       AG      C -       -     a a    ca 

>crm-mir-64b (-53.30)   [crm-miR-64b:15-37] [crm-miR-64b*:57-78]

-     -         C        C  G     C     --   acu 
 ggggc cucgccgau AUGACACU AA CAUAC AUGGa  cug   u
 ||||| ||||||||| |||||||| || ||||| |||||  |||    
 ccccg gagcggcUA UAUUGUGA UU GUAUG UACcu  gac   u
c     u         C        -  G     -     aa   gac 

>ppc-mir-1 (-44.10)   [ppc-miR-1:67-86]

-     acu    auuc      c              gcc     cuugc    a 
 cucuc   ccuc    accguu cguacuucuuugca   ccaua     ccgc u
 |||||   ||||    |||||| ||||||||||||||   |||||     |||| g
 gagag   ggag    ugguaa GUAUGAAGAAAUGU   GGUau     ggug a
c     --c    ---c      U              -AA     ----u    a 

>ppc-mir-45 (-45.90)   [ppc-miR-45:63-83]

-      ca      cu          ga   u       -  --c c  a 
 gagucg  gccccg  cuggaugugu  ucu ggucgua uc   g gc a
 ||||||  ||||||  ||||||||||  ||| ||||||| ||   | ||  
 cucggc  cggggu  GACUUACACA  AGA UCAGUau ag   c cg a
u      --      UC          -G   -       u  uaa u  u 

>ppc-mir-42a (-54.20)   [ppc-miR-42a:71-92]

-     uucag   a               cu   u    cu    -ugu   augc 
 gugca     ugc gcccgcagugggugu  gcc cggu  gaag    gag    a
 |||||     ||| |||||||||||||||  ||| ||||  ||||    |||     
 cacgu     acg cgggCGUUACCUACA  UGG GCCA  CUuc    cuc    u
c     -----   -               AG   -    --    uugc   cuag 

>ppc-mir-63g (-35.80)   [ppc-miR-63g:58-80]

-  -   ucucc     uc   u   -      c     c  -   cau 
 gc ccg     uuuuc  cgu cgc cuguua gucau gu ccu   u
 || |||     |||||  ||| ||| |||||| ||||| || |||   c
 cg ggc     aaaaG  GCA GCG GACAAU CAGUA ca gga   g
u  a   -uucu     GA   C   A      -     U  u   uag 

>ppc-mir-2232-1 (-43.50)   [ppc-miR-2232:63-85]

c  a       auc  au    a       -   -    g      -  aua u 
 ug gagaccc   cg  ccug acgguuc ccu ggug cauggu cg   c a
 || |||||||   ||  |||| ||||||| ||| |||| |||||| ||   |  
 ac cuuuggg   gc  ggaC UGUCAAG GGG CCAC GUAUca gc   g a
a  -       ---  --    C       C   U    A      a  -ga u 

>ppc-mir-87 (-51.50)   [ppc-miR-87:61-82]

-    u     cau      -        -   gua    a   -  -   a 
 gggg gacgu   gcucgu cgccugaa cuu   cuca ccu cg uca u
 |||| |||||   |||||| |||||||| |||   |||| ||| || ||| a
 cccc cugcg   cgagCG GUGGACUU GAA   GAGU Gga gc agu g
u    -     -au      U        U   -AC    -   c  g   a 

>ppc-mir-124 (-44.10)   [ppc-miR-124:62-81]

-  a    -     a   a   c  u       -   a       --g       
 ga gggu cguua uuc cuu gc uucaccg gug cuuuagu   cuuugu 
 || |||| ||||| ||| ||| || ||||||| ||| |||||||   ||||| c
 cu ccua gcaau aag gaa CG AAGUGGC CAC GGAAUca   gagaca 
a  a    a     -   a   C  U       G   -       aga       

>ppc-mir-239-1 (-37.30)   [ppc-miR-239:26-46]

a    aa    ca     u    u U      UA     -        -  auau 
 ucau  cgca  uuaca gccu g UUGUAC  GGCUA AGGAAUUa cg    a
 ||||  ||||  ||||| |||| | ||||||  ||||| |||||||| ||    u
 agua  gcgu  ggugu cgga c agcgug  cugau uccuuaau gc    u
-    --    -a     -    c u      uc     g        a  gaag 

>ppc-mir-37 (-31.40)   [ppc-miR-37:56-77]

-     gucc       c  c    a     a  a     -  gag 
 ucuga    cuucgau gc ucug ucacu cg ugaaa cu   a
 |||||    ||||||| || |||| ||||| || ||||| ||   u
 aggcu    gaaguUG CG AGAC AGUGG GC ACUuu ga   a
a     -aua       U  A    A     -  C     u  gca 

>ppc-lin-4 (-46.40)   [ppc-lin-4:29-48]

c    c  -    ugcu    aa      U  C     C     -       ga   a 
 caca ca cgac    agca  uggcgu CC UGAGA CUCAA UUGUGau  gau c
 |||| || ||||    ||||  |||||| || ||||| ||||| |||||||  |||  
 gugu gu gcug    ucgu  aucgca gg acucu gaguu ggcacug  cug g
-    u  a    ---u    --      c  u     c     u       -a   a 

>ppc-mir-252 (-33.50)   [ppc-miR-252:26-46]

-     ccuauc     g  c    uC       U  U  CGC      -  aaca 
 gauca      acucu uc gggu  UAAGUAG AG GC   AGGUaa cc    a
 |||||      ||||| || ||||  ||||||| || ||   |||||| ||    u
 cuagu      ugaga ag ucca  auucguc uc cg   uccauu gg    u
u     ------     -  u    ca       u  -  aua      u  agag 

>ppc-mir-63b (-52.80)   [ppc-miR-63b:71-92]

     aucc      -uc c    a       c      a    u     u    -  guu 
gaacu    gaucca   g ucac ugggaac cucucg cuuu guguc uaga cu   u
|||||    ||||||   | |||| ||||||| |||||| |||| ||||| |||| ||   c
cuuga    cugggu   c agug acccuUG GAGAGC GAAG CACAG AUcu ga   g
     ----      uuu a    -       U      -    U     U    u  aaa 

>ppc-mir-63c-1 (-53.00)   [ppc-miR-63c:60-82]

       -a      g           -      -    u       c  gau 
gaaucau  guccau ugggguuccau ucgcau gagu ucaugga uc   u
|||||||  |||||| ||||||||||| |||||| |||| ||||||| ||    
cuuggua  cgggug gcuccaGGGUA AGCGUA CUCA AGUAUcu ag   c
       ac      -           G      A    C       -  aua 

>ppc-mir-63c-2 (-66.10)   [ppc-miR-63c:67-89]

      c       -aa     g           -      -    u       c  gau 
gguacc gaaccau   uccau cgggguuccau ucgcau gagu ucaugga uc   u
|||||| |||||||   ||||| ||||||||||| |||||| |||| ||||||| ||    
ccaugg cuuggua   aggug gcuccaGGGUA AGCGUA CUCA AGUAUcu ag   c
      -       acc     -           G      A    C       -  aua 

>ppc-mir-63c-3 (-58.90)   [ppc-miR-63c:67-89]

      c a    -uaa     g           -      -    u       c  gau 
gguacc g acca    uccau ugggguuccau ucgcau gagu ucaugga uc   u
|||||| | ||||    ||||| ||||||||||| |||||| |||| ||||||| ||    
ccaugg c uggu    aggug gcuccaGGGUA AGCGUA CUCA AGUAUcu ag   c
      - a    uacc     -           G      A    C       -  aua 

>ppc-mir-63c-4 (-64.10)   [ppc-miR-63c:67-89]

      c       -aa     g           -      -    u       c  gau 
gguacc gaaccau   uccau ugggguuccau ucgcau gagu ucaugga uc   u
|||||| |||||||   ||||| ||||||||||| |||||| |||| ||||||| ||    
ccaugg cuuggua   aggug gcuccaGGGUA AGCGUA CUCA AGUAUcu ag   c
      -       acc     -           G      A    C       -  aua 

>ppc-mir-79 (-33.70)   [ppc-miR-79:59-80]

c   g     a  u   c        u    u     c   -  aaau 
 gga aauca cu cuu gcuuuggu aucu gcuuu uga cu    g
 ||| ||||| || ||| |||||||| |||| ||||| ||| ||     
 cuu uuagu gg gaa CGAAACCA UGGA CGAAA Acu gg    u
c   g     -  c   U        U    U     U   u  aacc 

>ppc-mir-84b (-40.50)   [ppc-miR-84b:24-44]

   -c     a   auac     u        UU       U    ----ug  u 
ucc  uucca ucg    cacag UGAGGUAG  AAGAAUA GUGa      cc u
|||  ||||| |||    ||||| ||||||||  ||||||| ||||      || u
agg  aaggu agc    guguc acuccguc  uucuuau cacu      gg c
   cu     -   ---a     c        -c       u    uacuaa  g 

>ppc-mir-42b (-41.80)   [ppc-miR-42b:56-77]

c      cc u    uu   a      -c    c      ugu  a 
 ucugag  g gccu  guc cagaau  ccug gugacc   ga u
 ||||||  | ||||  ||| ||||||  |||| ||||||   || u
 aggcuc  c cgga  CAG GUCUUA  GGGC CACUgg   cu g
-      uc u    UC   C      UU    -      -uu  a 

>ppc-mir-239-2 (-37.40)   [ppc-miR-239:27-47]

   -a   cuuacu   g   -    u U      UA     -        -   cau 
gga  gca      cau cau gccu g UUGUAC  GGCUA AGGAAUUa cgu   a
|||  |||      ||| ||| |||| | ||||||  ||||| |||||||| |||   u
ccu  cgu      gua gua cgga c aacgug  cugau uccuuaau gcg   u
   ag   cguaac   a   u    c u      cc     c        u   aag 

>ppc-mir-46 (-48.00)   [ppc-miR-46:71-91]

    -cc  c     gca   a  -         --    ugu       -  --g   - g 
accc   gg accac   gag cc gaagagagc  cuuc   ugacagu gc   ggc c u
||||   || |||||   ||| || |||||||||  ||||   ||||||| ||   ||| |  
uggg   cc uggug   uuc gg CUUCUCUCG  GAGG   ACUGUua cg   ucg g u
    acu  -     ---   -  a         CU    --U       u  uaa   u g 

>ppc-mir-81 (-37.10)   [ppc-miR-81:54-75]

     cc     u cg        gu      g    - uaau 
ucacu  cggca g  guuuucac  ugaucu agag c    c
|||||  ||||| |  ||||||||  |||||| |||| |     
aguga  gccgu C  CGAAAGUG  ACUAGA Ucuu g    g
     -a     U AU        AU      G    u uaua 

>ppc-let-7 (-42.20)   [ppc-let-7:17-38]

-     c a  ---u    cU   G   -              cggaauaa      c    
 gcgac g gc    ccug  GAG UAG UAGGUUGUAUAGUU        uaccaa ugu 
 ||||| | ||    ||||  ||| ||| ||||||||||||||        |||||| || a
 cguug c cg    ggac  uuc auc guccaacaugucaa        gugguu acu 
g     a c  cuac    cg   g   u              -------a      a    

>ppc-mir-63a (-64.80)   [ppc-miR-63a:71-92]

u       c   -aa   -      a     c  u     g   ug  u     -ug   acu 
 cucuccc ucu   ucc ccccuu gccgu cc ucucg cuu  gu gucau   ucu   u
 ||||||| |||   ||| |||||| ||||| || ||||| |||  || |||||   |||    
 gggaggg aga   agg ggggag cggca GG AGAGC GAA  CA CAGUA   aga   g
-       -   agg   a      -     U  U     -   GU  -     Uca   gaa 

>ppc-mir-71 (-50.36)   [ppc-miR-71:28-52]

-     gucgacg     cg     a        A    UU        G    ugaaau 
 gucgu       accga  agcga ggUGAAAG CCUG  GGUAGUGA ACGa      u
 |||||       |||||  ||||| |||||||| ||||  |||||||| ||||      u
 cggua       uggcu  ucguu ccgcuuuc ggac  ccaucacu ugcu      a
c     ----aca     --     c        -    --        a    uuccua 

>ppc-mir-63d (-42.31)   [ppc-miR-63d:68-89]

c     uggc    cuuuuuu     c         uu  c        -  ucau 
 cuccc    ccgu       uuucu cguucgcuu  gg gucauggu cc    u
 |||||    ||||       ||||| |||||||||  || |||||||| ||    u
 gaggg    ggca       agaGA GCGAGCGAA  UC CAGUAUca gg    g
-     ---u    -------     A         -C  A        u  ucgg 

>ppc-mir-2232-2 (-55.50)   [ppc-miR-2232:71-93]

-   c        g -c     g   -   ag   c     au   c c   u  -   a  u 
 guu gccuaauc u  gccca cuc ggg  cgg ucgcc  ggu g cau ga ccg uu g
 ||| |||||||| |  ||||| ||| |||  ||| |||||  ||| | ||| || ||| ||  
 cga cggguugg a  cgggu gag ccC  GUC AGCGG  CCA C GUA cu ggc ag a
c   -        g ac     -   u   CU   A     GU   - A   U  a   -  u 

>ppc-mir-72 (-40.70)   [ppc-miR-72:24-45]

-      ---     c uau   a   A   A G    U    U   U  -ug  cga 
 gcaauu   ggucg g   ccg gug GGC A AUGU GGCA AGC Ga   gu   a
 ||||||   ||||| |   ||| ||| ||| | |||| |||| ||| ||   ||   u
 cguuga   ccagc c   ggc cgc ccg u uaca ccgu ucg cu   cg   u
u      cgc     - ---   a   a   a g    -    c   c  uaa  aag 

>ppc-mir-86 (-45.80)   [ppc-miR-86:21-43]

    g    gc ---au      -        UUUC     A       agccu 
ccuu aucg  c     gccggc UAAGUGAA    UUGCC CAGUCuu     a
|||| ||||  |     |||||| ||||||||    ||||| |||||||      
ggga uggc  g     cggccg guucgcuu    aacgg gucggaa     a
    g    aa aagau      c        ucau     -       cacuu 

>ppc-mir-242 (-50.10)   [ppc-miR-242:32-53]

       uagucagc       guc      U       GC U     U -     -au   ug 
aaaaggu        ugggacg   cguggu UGCGUAG  C UCGAU G GCGau   uuc  c
|||||||        |||||||   |||||| |||||||  | ||||| | |||||   |||  a
uuuucca        accuugc   guaccg acgcguc  g agcua c cgcua   aag  c
       -------u       -aa      u       ua c     - g     cgu   ua 

>ppc-mir-63f (-44.30)   [ppc-miR-63f:59-80]

c     ---cu    ccu            -    -g   u       -  uuc 
 agagc     ucca   gggguuccauuc guau  agu ucaugga cu   c
 |||||     ||||   |||||||||||| ||||  ||| ||||||| ||    
 ucuug     aggu   ccccaaGGUGAG CGUG  UCA AGUAUcu ga   c
-     auaau    -au            G    AG   C       c  cau 

>ppc-mir-65 (-45.70)   [ppc-miR-65:18-41]

-   g  cg u      uU         A   CU        -  g aua 
 uca uc  c gcccuu  AUGACACUG CCC  CAAUGCGG au u   a
 ||| ||  | ||||||  ||||||||| |||  |||||||| || |    
 agu ag  g cgggaa  uacugugac ggg  guuacgcc ua a   c
g   a  -a u      cc         -   -u        a  g ggu 

>ppc-mir-84a (-43.30)   [ppc-miR-84a:31-51]

-    ccucu   u   gu    cccu    U       UUA      A    ug  cau 
 uacu     ccu ccc  cgau    cagu GAGGUAG   AGAAUA GUGa  ac   c
 ||||     ||| |||  ||||    |||| |||||||   |||||| ||||  ||    
 auga     gga ggg  gcug    guca cuccguc   ucuuau cacu  ug   a
c    caucu   -   ug    ---u    c       -cc      g    ua  aag 

>ppc-mir-2252 (-31.90)   [ppc-miR-2252:47-68]

g    -------g       -   u      uuu        ac 
 aggg        uggcacu cgg cuagaa   gacagauu  c
 ||||        ||||||| ||| ||||||   ||||||||   
 uccu        ACUGUGA GCC GAUCUU   CUgucuaa  g
a    aauaaaaG       A   C      --C        ac 

>ppc-mir-2257 (-40.60)   [ppc-miR-2257:63-83]

      --------   ----a     ugacugaaca             a   -        ccua 
gaugua        acu     gcagu          uuucggacuuuca cag gccauaca    a
||||||        |||     |||||          ||||||||||||| ||| ||||||||     
uugcau        uga     cgucg          aaaGCCUGGAAGU GUC CGGUAUgu    u
      aaaaaaaa   gaaaa     ----------             C   A        auug 

>ppc-mir-2258 (-43.70)   [ppc-miR-2258:63-84]

u   ucu   ----au     uc       c         --       u  c  u  a 
 cuc   cug      cucaa  gggaguu cgguuucgu  ugguguc au uc ac g
 |||   |||      |||||  ||||||| |||||||||  ||||||| || || || a
 gag   gau      gaguu  cccuuaa GCCAAAGCG  ACCACAG UA ag ug a
-   -uu   guagau     -c       C         AA       -  A  u  g 

>ppc-mir-2234a (-54.80)   [ppc-miR-2234a:74-95]

-        ucuguu        cga u    c       -c      uu      --    cua 
 gagagggg      ggaaggcc   g cuca agggaga  augaca  uaucac  ucga   u
 ||||||||      ||||||||   | |||| |||||||  ||||||  ||||||  ||||    
 cucucucu      ccuuccgg   c gagU UCCUUCU  UACUGU  AUAGUg  agcu   u
u        -----c        cag -    U       AC      --      ac    auc 

>ppc-mir-2234b (-48.50)   [ppc-miR-2234b:66-85]

-----c c   -aga        ca     u            -   a   cuc    -   c 
      g gua    ccucgcga  ucuuc cuucgguagauc cga cau   cacc cuu c
      | |||    ||||||||  ||||| |||||||||||| ||| |||   |||| ||| a
      c cau    ggagugcu  agagg gaaGCCAUUUAG GCU GUA   GUgg gaa g
gugcca -   caac        --     -            C   -   -UA    c   u 

>ppc-mir-236 (-44.01)   [ppc-miR-236:78-100]

     --    aa a     c   -     c    c        -  ------- a      cg 
gugga  aguc  g cgaga guc uuaca gaca guauugga gu       g gucccc  u
|||||  ||||  | ||||| ||| ||||| |||| |||||||| ||       | ||||||   
uaucu  ucag  c gcuCU CAG AAUGU CUGU CAUAAUcu cg       c cagggg  c
     ac    -- -     U   U     A    -        a  uauaaau a      ac 

>ppc-mir-2244 (-27.50)   [ppc-miR-2244:46-67]

-   gaag   -----  -c          u     ----u    g 
 cgc    gug     gc  gcuuacuugg auugu     ggua c
 |||    |||     ||  |||||||||| |||||     ||||  
 gug    cac     CG  CGAAUGAACC UAACA     ccgu g
a   --aa   auuaa  UC          U     CUauu    a 

>ppc-mir-2248 (-47.94)   [ppc-miR-2248:19-39]

      ucacc    c  C      A  C           ----------ca    a  u 
gagcgc     aguc gg UCCAGA CA GUCAAGAGAGa            cuuc cc c
||||||     |||| || |||||| || |||||||||||            |||| ||  
cucgcg     ucag cc aggucu gu caguucucucu            gaag gg u
      ---cc    a  a      g  -           cucucucccgac    -  c 

>ppc-mir-2253 (-29.50)   [ppc-miR-2253:39-59]

    -          a   -     a  c uc 
gcuu cggacuuuca cag gccau ca c  g
|||| |||||||||| ||| ||||| || |   
cgaa GCUUGGAAGU GUC CGGUA gu g  u
    a          C   A     C  a ug 

>ppc-mir-2254 (-35.70)   [ppc-miR-2254:60-82]

u c      uccaa         c      c          a  cu 
 g uucgcu     gugaguuuu uguagu caagcggguc ga  g
 | ||||||     ||||||||| |||||| |||||||||| ||  u
 c aaguGA     CAUUCGAAA GUAUCA GUUUgcccag cu  c
g u      -----         C      U          -  ac 

>ppc-mir-63e (-52.30)   [ppc-miR-63e:62-83]

a   -  -   u  a       c         g  g         -  ucaa 
 aag gc ccg cc guuuucu cgcucgcuu ua ugucauggc cc    u
 ||| || ||| || ||||||| ||||||||| || ||||||||| ||    c
 uuc cg ggc gg caagaGA GUGAGCGAA AU GCAGUAUcg gg    g
-   u  a   u  -       A         G  -         u  ucug 

>ppc-mir-63h (-49.10)   [ppc-miR-63h:68-89]

    ccccu   -   u cacu      c             c    ug  -   cau 
ggau     agc ccg c    uuuucu cgcucgcuugaga gucg  gu ccu   u
||||     ||| ||| |    |||||| ||||||||||||| ||||  || |||    
ccua     ucg ggc g    aaaaGA GCGAGCGAACUUU CAGC  ca gga   g
    ----c   a   u --cu      U             -    CU  u   agg 

>ppc-mir-2255 (-31.90)   [ppc-miR-2255:57-78]

    uugccccuuc            u      a    c   u   g 
gagc          uugccaauacua ucaaug caau uaa ccg u
||||          |||||||||||| |||||| |||| ||| |||  
cucg          aaCGGUUAUGGU AGUUAC GUUA auu ggu a
    --------ca            U      -    A   -   a 

>ppc-mir-2256 (-40.80)   [ppc-miR-2256:68-87]

-    a g  u uc ug    uauc  gc g      g            - c   uu 
 cgcg u ua u  c  augu    ua  u gguuug gcucgaacaaca c aca  a
 |||| | || |  |  ||||    ||  | |||||| |||||||||||| | |||  c
 gcgc a au a  g  ugca    gu  a CCAAAC UGAGUUUGUUGU g ugu  g
c    g g  c gu gu    ---u  aa G      G            u c   ug 

>ppc-mir-2235-1 (-39.20)   [ppc-miR-2235:55-76]

-   -   cucuu     c    u    a  g     uu    -  aa 
 ggg ccg     gcccg ucau caau uu ccggu  gaac ga  u
 ||| |||     ||||| |||| |||| || |||||  |||| ||   
 ccc ggc     cgggC AGUA GUUA GA GGCCA  CUug cu  u
u   a   ---uu     U    U    C  G     --    a  ag 

>ppc-mir-2235-2 (-39.20)   [ppc-miR-2235:55-76]

-   -   cucuu     c    u    a  g     uu    -  aa 
 ggg ccg     gcccg ucau caau uu ccggu  gaac ga  u
 ||| |||     ||||| |||| |||| || |||||  |||| ||   
 ccc ggc     cgggC AGUA GUUA GA GGCCA  CUug cu  u
u   a   ---uu     U    U    C  G     --    a  ag 

>ppc-mir-2235-3 (-39.20)   [ppc-miR-2235:55-76]

-   -   cucuu     c    u    a  g     uu    -  aa 
 ggg ccg     gcccg ucau caau uu ccggu  gaac ga  u
 ||| |||     ||||| |||| |||| || |||||  |||| ||   
 ccc ggc     cgggC AGUA GUUA GA GGCCA  CUug cu  u
u   a   ---uu     U    U    C  G     --    a  ag 

>ppc-mir-2235-4 (-39.20)   [ppc-miR-2235:55-76]

-   -   cucuu     c    u    a  g     uu    -  aa 
 ggg ccg     gcccg ucau caau uu ccggu  gaac ga  u
 ||| |||     ||||| |||| |||| || |||||  |||| ||   
 ccc ggc     cgggC AGUA GUUA GA GGCCA  CUug cu  u
u   a   ---uu     U    U    C  G     --    a  ag 

>ppc-mir-2235-5 (-35.40)   [ppc-miR-2235:55-76]

-   ccg  cuu     c    u    a  g     uu    -  aa 
 ggg   cu   gcccg ucau caau uu ccggu  gaac ga  u
 |||   ||   ||||| |||| |||| || |||||  |||| ||   
 ccc   ga   cgggC AGUA GUUA GA GGCCA  CUug cu  u
u   --a  cuu     U    U    C  G     --    a  ag 

>ppc-mir-2235-6 (-36.00)   [ppc-miR-2235:55-76]

-   -   cucuug    c    u    a  g     uu    -  aa 
 ggg ccg      cccg ucau caau uu ccggu  gaac ga  u
 ||| |||      |||| |||| |||| || |||||  |||| ||   
 ccc ggc      gggC AGUA GUUA GA GGCCA  CUug cu  u
u   a   ---uua    U    U    C  G     --    a  ag 

>ppc-mir-2235-7 (-39.20)   [ppc-miR-2235:55-76]

-   -   cucuu     c    u    a  g     uu    -  aa 
 ggg ccg     gcccg ucau caau uu ccggu  gaac ga  u
 ||| |||     ||||| |||| |||| || |||||  |||| ||   
 ccc ggc     cgggC AGUA GUUA GA GGCCA  CUug cu  u
u   a   ---uu     U    U    C  G     --    a  ag 

>ppc-mir-2235-8 (-37.20)   [ppc-miR-2235:54-75]

-     cucuu     c    u    a  g     uu    -  aa 
 guccg     gcccg ucau caau uu ccggu  gaac ga  u
 |||||     ||||| |||| |||| || |||||  |||| ||   
 caggc     cgggC AGUA GUUA GA GGCCA  CUug cu  u
c     ---uu     U    U    C  G     --    a  ag 

>ppc-mir-2238b-1 (-43.90)   [ppc-miR-2238b:66-86]

-  cu   u    - u     gccua    c gu      cu  c         ugau 
 cc  cca ggaa c agucu     cuuc c  cuacuc  uu gucauucgu    a
 ||  ||| |||| | |||||     |||| |  ||||||  || |||||||||     
 gg  ggu ccuu g ucaga     gaaG G  GGUGAG  AA CAGUAAgca    c
u  uu   u    c u     ---ag    A UG      CU  -         uaag 

>ppc-mir-2236a (-36.30)   [ppc-miR-2236a:19-40]

c        auca   c  A   G          -U     u  uauu 
 gaucgaua    uuc gU CCU AGGUGGAUUA  UCACU ga    g
 ||||||||    ||| || ||| ||||||||||  ||||| ||     
 cuagcuau    aag cg gga ucuaccuaau  aguga cu    g
-        ---a   c  a   g          uu     -  ucaa 

>ppc-mir-2236b (-39.50)   [ppc-miR-2236b:19-40]

a      aau  a      C   G    U     -      ----u  u 
 gaucga   uc uucggU CCU AGGU GAUUA CUCACU     uc c
 ||||||   || |||||| ||| |||| ||||| ||||||     || u
 cuagcu   ag aagcca gga ucca cuaau gaguga     ag u
-      ---  a      c   g    c     u      cuugu  u 

>ppc-mir-2259 (-43.20)   [ppc-miR-2259:35-57]

   uaauagu    u c      --u     ccaauU   A   UU             - u  gc 
gga       uggg g ugaucc   ccggu      GGC AGA  AACUAGCUUACUG c gu  a
|||       |||| | ||||||   |||||      ||| |||  ||||||||||||| | ||  u
ccu       acuc c acuagg   gguca      ccg ucu  uugauugagugac g ua  u
   ------u    - a      uac     -----u   a   uu             a u  ag 

>ppc-mir-2260 (-26.70)   [ppc-miR-2260:81-102]

cucgacccgcuuccuauuucaaucnnnnnnnnnn   u   c ug   cu   g          aaaau 
                                  ccu auc u  gaa  gcu aucuuaucgc     a
                                  ||| ||| |  |||  ||| ||||||||||      
                                  gga UAG A  CUU  CGG UGGAAUagug     a
--------------------------gagcuuca   C   A GU   UU   -          cgugu 

>ppc-mir-2261 (-37.70)   [ppc-miR-2261:50-71]

-  uu               -cc    g       caga   c 
 cg  gcuguuauucguuca   guug cuaaacu    gca u
 ||  |||||||||||||||   |||| |||||||    |||  
 gc  cggcaGUAAGCAAGU   CAAC GGUUUga    cgu c
g  cu               ACU    -       ----   g 

>ppc-mir-2262 (-40.70)   [ppc-miR-2262:31-53]

-    a      uugacc    aa     a  A        CC  UG  A      gua 
 gaau aauguu      cucg  ugacg gU CCCGAUGU  AG  GU CCUUcu   u
 |||| ||||||      ||||  ||||| || ||||||||  ||  || ||||||   u
 cuua uugcga      gagu  acugu ca gggcuaca  uc  ca ggaaga   g
u    a      -----u    -a     c  c        uu  cu  -      aga 

>ppc-mir-2240b (-36.90)   [ppc-miR-2240b:57-78]

u     caac u    u    u    -        uuuc       aa 
 acucg    g cccu aucu cuga aaucucug    gaucacu  u
 |||||    | |||| |||| |||| ||||||||    |||||||   
 ugagc    c ggga UAGA GACU UUAGGGAC    CUaguga  u
-     --ua -    U    U    C        ---C       gg 

>ppc-mir-2240a-1 (-40.70)   [ppc-miR-2240a:59-80]

-   -     caac u    u    u    -     a   uuc      uaa 
 gcu acucg    g cccu aucu cuga aaucc ggu   gaucac   u
 ||| |||||    | |||| |||| |||| ||||| |||   ||||||    
 cga ugagc    c ggga UAGG GACU UUAGG CCA   CUagug   u
u   c     --ua -    U    U    C     G   ---      ugg 

>ppc-mir-2240a-2 (-40.40)   [ppc-miR-2240a:59-80]

-   -     caac u    u    u    -     a   uuc      uaa 
 gcu acucg    g cccu aucu cuga aaucc ggu   gaucac   u
 ||| |||||    | |||| |||| |||| ||||| |||   ||||||    
 cgg ugagc    c ggga UAGG GACU UUAGG CCA   CUagug   u
u   c     --ua -    U    U    C     G   ---      ugg 

>ppc-mir-2240c (-38.44)   [ppc-miR-2240c:69-90]

-  uacccuuu  -a     cuac u    u    u    -        uuuc      uaa 
 gg        gc  acucg    g cccu aucu cuga aaucucug    gaucac   u
 ||        ||  |||||    | |||| |||| |||| ||||||||    ||||||    
 cc        cg  ugagc    c ggga UAGG GACU UUAGGGAC    CUagug   u
c  --uuaccu  ac     --ua -    U    U    C        ---C      ugg 

>ppc-mir-2238a-1 (-39.90)   [ppc-miR-2238a:69-89]

-    ---      uaa      a     c    c uuuu    c    c    a    uaau 
 cggu   uuaugg   cuaguc uuccu uuuc c    cacu aucu guca ucga    u
 ||||   ||||||   |||||| ||||| |||| |    |||| |||| |||| ||||     
 guca   aaugcc   gaucag aagga aGAG G    GUGA UAGA CAGU Agcu    g
g    cau      uuc      -     -    C ---C    C    -    A    uuaa 

>ppc-mir-2238a-2 (-36.10)   [ppc-miR-2238a:67-87]

u    c   uau      ga    c    c auu    cu   c    g      au 
 uauu ugg   cuaguc  uccu uuuc c   cacu  ucu guca ucgaug  u
 |||| |||   ||||||  |||| |||| |   ||||  ||| |||| ||||||   
 guag gcc   gaucag  agga aGAG G   GUGA  AGA CAGU Agcuau  g
g    u   uuc      -a    -    C --C    CU   -    A      aa 

>ppc-mir-2238a-3 (-36.60)   [ppc-miR-2238a:60-80]

  uaa      gaucc      c   u    cu   c    g      au 
gg   cuaguc     ucuuuc cgu cacu  ucu guca ucgaug  u
||   ||||||     |||||| ||| ||||  ||| |||| ||||||   
cc   gaucag     aggaaG GCG GUGA  AGA CAGU Agcuau  g
  uuc      ----a      A   C    CU   -    A      aa 

>ppc-mir-2238c (-34.80)   [ppc-miR-2238c:63-84]

-     au c      gaucc      c   u    -c    c    g    uga 
 uuaug  a cuaguc     ucuuuc cgu cacu  uucu guca ucga   u
 |||||  | ||||||     |||||| ||| ||||  |||| |||| ||||   g
 agugc  u gaucag     aggaaG GCG GUGA  AAGA CAGU Agcu   a
u     cu c      ----a      A   C    AC    -    A    uua 

>ppc-mir-234 (-46.70)   [ppc-miR-234:69-89]

  -ga       - --a    cgc     cug         u   g       c    gau 
cc   uccucuc c   aucc   ucacg   ggcauucuu agu aauaaca guuu   a
||   ||||||| |   ||||   |||||   ||||||||| ||| ||||||| ||||    
gg   aggaggg g   uagg   agugc   CCGUAAGAA UCG UUAUUgu caag   c
  acg       a caa    --u     UAA         C   -       -    aag 

>ppc-mir-54 (-51.50)   [ppc-miR-54:69-92]

--  gu a    uau   -     uacu     c         -     -     c  -   au 
  ag  u gcug   ucc uucuc    gccgu cgaguuauu ucauu cgggu ua ccu  u
  ||  | ||||   ||| |||||    ||||| ||||||||| ||||| ||||| || |||   
  uc  a cgac   agg aggag    cggcG GCUUAAUAA AGUAA GCCCA au gga  g
gu  ug g    --u   c     --uu     C         U     U     A  c   ga 

>ppc-mir-55b (-36.00)   [ppc-miR-55b:55-76]

-    -a  -ua        c         -  a   c  -c    a 
 gcac  gc   aguuucga guauaacgu gc ggu gc  cuau u
 ||||  ||   |||||||| ||||||||| || ||| ||  |||| g
 cgug  ug   ucaaGGCU UAUAUUGCA UG CCA cg  ggua a
a    ag  uuc        U         A  C   A  cu    a 

>ppc-mir-2263 (-41.60)   [ppc-miR-2263:55-75]

   -     ccau    cc         -  uu      a     aa 
gcu auucg    gccc  auccucaaa aa  ccgaga ccacg  u
||| |||||    ||||  ||||||||| ||  |||||| |||||  u
cga ugggc    cggg  UAGGAGUUU UU  GGCUCU Ggugu  g
   c     --uu    aa         C  CG      -     aa 

>ppc-mir-2264 (-49.70)   [ppc-miR-2264:20-41]

   -ca     cg        A      C  A  -A   C    -ag   ca 
gca   gucca  ccgcgggU UCACAG GC CA  CGG GAUg   ugu  c
|||   |||||  |||||||| |||||| || ||  ||| ||||   |||   
cgu   caggu  ggcgcccg aguguc cg gu  gcc cuau   gca  u
   cac     -a        a      a  c  ag   c    aaa   ug 

>ppc-mir-232 (-35.40)   [ppc-miR-232:64-86]

u       ugaa    c      u   -c  u      cu    ---    a 
 ucuucaa    aucg ccaucg agu  ag ugcauu  uucg   gauc a
 |||||||    |||| |||||| |||  || ||||||  ||||   |||| u
 agaaguu    uagc GGUGGC UCA  UC ACGUAA  aagc   cuag u
-       ----    a      U   CA  U      AU    uau    a 

>ppc-mir-2265 (-42.70)   [ppc-miR-2265:17-37]

c        u     cA         AAA  A  -A   g  ccu 
 gaugcccg gcuag  ACCAGAUGG   CG GG  GGa uc   u
 |||||||| |||||  |||||||||   || ||  ||| ||   u
 cuacgggu cgguc  uggucuacu   gc cc  ccu ag   g
-        -     cc         ccg  c  gc   a  caa 

>ppc-mir-2266 (-45.30)   [ppc-miR-2266:23-44]

a    -      ag   cc    A   C  UU  GU         -   gau 
 uucg uuccuc  cgc  ucgg ACC GA  GU  CUAGUGUUC ugu   u
 |||| ||||||  |||  |||| ||| ||  ||  ||||||||| |||   a
 aagc aaggag  gcg  agcc ugg cu  ca  gaucacgag acg   c
-    c      --   --    c   a  cu  ug         u   aag 

>ppc-mir-2237a (-47.40)   [ppc-miR-2237a:16-38]

-   -    gu     a      U    UU      A      gau 
 ggc aucu  gccag UACCCG UGGU  UCGGAC GUUcgu   u
 ||| ||||  ||||| |||||| ||||  |||||| ||||||    
 ccg uagg  cgguc gugggc aucg  ggcuug caagcg   g
a   g    au     c      u    -c      c      aca 

>ppc-mir-2237b (-35.80)   [ppc-miR-2237b:17-38]

-    -a  ggu    aaU       -     C  A    U   aaa 
 uggu  uc   gcca   ACCCGUA GUUUU GG CAGU cgu   u
 ||||  ||   ||||   ||||||| ||||| || |||| |||    
 acca  ag   cggu   ugggcau uaaga cc guca gca   u
u    ag  aau    ccu       a     u  -    c   auu 

>ppc-mir-2267 (-51.70)   [ppc-miR-2267:27-48]

auc   -   - c         g    c     U   - C C    A       --g     
   cuc cuc c uuuccucgg ccgu UAGGG ACG C C CGCA GCUUagc   cauu 
   ||| ||| | ||||||||| |||| ||||| ||| | | |||| |||||||   ||| g
   gag gag g agaggaguc ggua gucuc ugc g g gcgu cgaaucg   guaa 
-ua   a   a c         -    a     u   u c a    -       gaa     

>ppc-mir-312 (-42.00)   [ppc-miR-312:59-78]

-    -c    ca     c  a   c   cu   c        --u   a 
 guga  cuau  uggcu uc ccg cuc  ugu gccaugcg   ggu u
 ||||  ||||  ||||| || ||| |||  ||| ||||||||   ||| g
 cacu  gaua  accga aG GGC GAG  ACA CGGUAUgc   ucg a
g    ua    --     a  A   A   UU   -        uuu   a 

>ppc-mir-2243 (-39.50)   [ppc-miR-2243:59-79]

  ccu     uac    cc       c    a      c       gau 
gc   cucga   gcuc  ucaucca agaa uucguu ucaucac   u
||   |||||   ||||  ||||||| |||| |||||| |||||||    
cg   gaguu   cgag  aGUAGGU UCUU AAGUAA AGUagug   c
  ucu     -cu    --       U    -      U       aag 

>ppc-mir-2242-1 (-48.90)   [ppc-miR-2242:69-92]

   g   -   --a      u acu    a uguu        cuua               a 
caa uga cau   gaagac g   ugcu g    cucacucg    uuucauuccgacaca g
||| ||| |||   |||||| |   |||| |    ||||||||    ||||||||||||||| a
guu acu gug   uuucug c   aCGA C    GAGUGAGC    AAAGUAAGGUUgugu a
   g   u   aug      c acu    - ---U        ----               a 

>ppc-mir-2242-2 (-46.80)   [ppc-miR-2242:69-92]

   g   -   a  --u    aacuuugua   -uc  c        a               a 
caa uga cau gc   gaug         gug   cu acucgcuc uuucauuccgacaca g
||| ||| ||| ||   ||||         |||   || |||||||| ||||||||||||||| a
guu acu gug ug   cugc         cac   GA UGAGUGAG AAAGUAAGGUUgugu a
   g   u   a  uuu    ---------   uaC  C        C               a 

>ppc-mir-2245 (-40.40)   [ppc-miR-2245:66-87]

-     -    ucuc      c     cua     g  c          u  c   cc 
 guacu ugau    cccccu aucgu   gcaua uu cgcucguauu gc auu  g
 ||||| ||||    |||||| |||||   ||||| || |||||||||| || |||   
 uauga auua    ggggga uagca   CGUAU AA GUGAGUAUAA cg uga  a
c     c    ----      -     CAC     G  A          -  -   ua 

>ppc-mir-2238d (-39.40)   [ppc-miR-2238d:62-83]

-       a c    aauuc          cg  c   a     a    ugau 
 uuuaccg g aguc     ccuuuucguu  cu cac uguca ucgu    u
 ||||||| | ||||     ||||||||||  || ||| ||||| ||||     
 aaguggc c ucag     ggaaGAGCGG  GA GUG ACAGU Agca    c
c       - -    ---au          UA  C   A     A    ugag 

>ppc-mir-2246 (-42.10)   [ppc-miR-2246:23-45]

-   uuc  -    aga u    c   C            UU  C    auaa 
 ccc   gc ccuc   g cccg UAU ACAAUAGUUUAG  GC GCau    u
 |||   || ||||   | |||| ||| ||||||||||||  || ||||     
 ggg   ug ggag   c gggc aua uguugucaaauc  cg cgua    g
a   --u  a    --g -    c   a            -u  c    gaag 

>ppc-mir-2249 (-37.30)   [ppc-miR-2249:43-64]

-  u    g  -u                   - aa 
 ug ggug au  cguauuccaucuucgugau c  u
 || |||| ||  ||||||||||||||||||| |  u
 ac ccac UA  GCAUAAGGUAGAAGCACua g  g
c  -    G  CC                   a ag 

>ppc-mir-67 (-45.30)   [ppc-miR-67:65-87]

   c    uc     uuc     a    c    - ug      ----    -   a 
uac guag  cacgg   accuc acgc cucu g  gguugu    cuga cuc c
||| ||||  |||||   ||||| |||| |||| |  ||||||    |||| ||| a
aug cauc  gugcu   uggaG UGUG GAGA C  CCAACA    gacu gag g
   c    ua     ---     C    U    U CU      CAcu    a   u 

>ppc-mir-2238b-2 (-30.50)   [ppc-miR-2238b:54-74]

    - u     gccga    c gu      cu  c      -  ua 
ggaa c agucu     cuuc c  cuacuc  uu gucauu ga  c
|||| | |||||     |||| |  ||||||  || |||||| ||  g
ccuu g ucaga     gaaG G  GGUGAG  AA CAGUAA cu  a
    c u     ---ag    A UG      CU  -      g  ua 

>ppc-mir-38 (-54.30)   [ppc-miR-38:61-82]

c     u     cu  u     -  a    g           a    ucca 
 uucga cugag  gg gccug cc caua ugacucccggu acca    u
 ||||| |||||  || ||||| || |||| ||||||||||| ||||    u
 aggcu gacuc  cc cggaC GG GUAU AUUGAGGGCCA Uggu    c
-     -     --  -     A  -    A           C    ucag 

>ppc-mir-2250 (-43.90)   [ppc-miR-2250:61-82]

   aaau    a     ---c  c     u               u   cgau 
gga    gaag cagag    gc cuccu guuuuacgcggucuc cau    u
|||    |||| |||||    || ||||| ||||||||||||||| |||    a
ccu    cuuc gucuu    cg GAGGA CAAAAUGUGCUAGAG gug    g
   -aac    a     cuac  a     C               U   aagg 

>ppc-mir-55a (-51.80)   [ppc-miR-55a:72-94]

  g       u  --      uu   a  a     c    -  a   a     --u    - u 
au cucacuc ga  ggggag  gcc cu ggcag aaug cu acg gugug   ugau c u
|| ||||||| ||  ||||||  ||| || ||||| |||| || ||| |||||   |||| |  
ua gagugag cu  ccucuc  cgg GA CUGUC UUAC GA UGC CAUac   acua g u
  g       c  ua      -u   c  G     -    C  A   C     ucu    u c 

>ppc-mir-56 (-51.90)   [ppc-miR-56:63-84]

     ----u     cgg   -           u  c  u        c  -c     
gaaga     cccuu   ugg gcucgguggaa cg uu cgggugcg gc  ggca 
|||||     |||||   ||| ||||||||||| || || |||||||| ||  ||| u
cuucu     gggaa   auc cGAGCCAUCUU GC AA GCCCAUgc cg  ucgu 
     ccucu     -ca   a           C  -  U        -  ua     

>ppc-mir-993 (-33.40)   [ppc-miR-993:74-93]

-    ucucucccccu      aacca     c      c  a  u   ua    -  g auu 
 gauc           ugggcu     uucug ccugua ag cg gcu  ucuc ug u   c
 ||||           ||||||     ||||| |||||| || || |||  |||| || |    
 uuag           auccgg     aagaC GGACAU UC GC CGA  AGag ac a   u
u    -uuucauacuu      ---ac     U      C  A  U   --    c  g aua 

>ppc-mir-2238e (-33.30)   [ppc-miR-2238e:60-80]

  uac       uuuc      c   u    c    c    -------g   a 
gg   cuagucu    ucuuuc cgu cacu uucu guca        ucg u
||   |||||||    |||||| ||| |||| |||| ||||        ||| g
cc   gaucaga    aggaaG GCG GUGA AAGA CAGU        agc a
  uuc       ----      A   C    C    -    AAgauaua   u 

>ppc-mir-2238a-4 (-39.40)   [ppc-miR-2238a:71-91]

c      u  -   uau      ga    c    c auu    cu   c    g      au 
 aaugcu uc ugg   cuaguc  uccu uuuc c   cacu  ucu guca ucgaug  u
 |||||| || |||   ||||||  |||| |||| |   ||||  ||| |||| ||||||   
 uugugg ag gcc   gaucag  agga aGAG G   GUGA  AGA CAGU Agcuau  g
u      u  u   uuc      -a    -    C --C    CU   -    A      aa 

>ppc-mir-2251 (-46.60)   [ppc-miR-2251:63-85]

   cgcua     cac u    a   c    -          uuu       ag 
gcc     cucga   g ccca auc ucau gaaucccggu   gaucacu  u
|||     |||||   | |||| ||| |||| ||||||||||   |||||||   
cgg     gagcu   c gggU UAG AGUA CUUAGGGCCA   CUaguga  u
   ---aa     --u -    C   A    U          ---       cg 

>ppc-mir-2 (-45.50)   [ppc-miR-2:68-89]

-   c     u     acgua  u  c         u  gc        u   a  u 
 gaa gagua agauc     gc ga cggcaguuc gc  gugaugcg ggu gu a
 ||| ||||| |||||     || || ||||||||| ||  |||||||| ||| || u
 cuu uucgu ucuag     cg CU GUCGUCAGG CG  CACUAUgc cua cg a
u   c     -     ----c  u  A         C  -A        -   -  a 

>ppc-mir-2268 (-49.30)   [ppc-miR-2268:60-81]

c     -a     c  c          -   c      g    -a     aa 
 ggccu  gccca uc ggguaccaau cgc auagug ucau  gaccg  c
 |||||  ||||| || |||||||||| ||| |||||| ||||  |||||   
 uugga  cgggu ag uccaUGGUUA GCG UGUCAC AGUA  uuggu  g
-     aa     -  u          U   C      -    Ac     aa 

>ppc-mir-240 (-53.10)   [ppc-miR-240:70-91]

-    --uc  g   u    u  u   c        u    c      u    - -  u u 
 ggcg    gu uga ggga ac gcc gggugagg uuga agguca uagg c gc g u
 ||||    || ||| |||| || ||| |||||||| |||| |||||| |||| | || | g
 cugc    ca gcu cccu ug cgg cCUAUUCC AACU UCCGGU AUcc g cg c a
c    cuuu  g   -    u  -   -        U    C      C    u u  c a 

>ppc-mir-2269 (-14.80)   [ppc-miR-2269:38-58]

---------------------------------cuuggcaggug  a      u 
                                            ag gugugu g
                                            || ||||||  
                                            uc cacgua u
agccguuucaacccgcaaGACUCUUACACGAGACUUAGUggaag  -      g 

>ppc-mir-2270 (-49.50)   [ppc-miR-2270:25-47]

-  caga         ga u     A        -       A   A     gcac 
 cg    uuucugagu  g ccggu AUGGUAAG AGAUUGA GUG CUguu    a
 ||    |||||||||  | ||||| |||||||| ||||||| ||| |||||     
 gc    aaagacuca  c ggccg uaccguuc ucuaacu cgc gacgg    u
a  --ag         -a -     a        c       -   c     aagu 

>ppc-mir-2271 (-43.30)   [ppc-miR-2271:66-87]

-  -gu       aaa     aaa  c      -      -    uu    -cu   auu 
 ga   gcacauc   cugca   gc uuugga aguaag cuau  gggu   acg   u
 ||   |||||||   |||||   || |||||| |||||| ||||  ||||   |||    
 cu   uguguag   gacgu   cg aGGCCU UCAUUC GAUG  CCCA   ugc   g
g  agc       ---     --g  a      A      C    --    Aau   gaa 

>ppc-mir-2239-1 (-43.40)   [ppc-miR-2239:60-80]

-    ---    aga   agcg     ---------u    c     cc      g    aga 
 gcga   gacg   gcg    ucgcc          aggu uuucc  cgcugc auuc   a
 ||||   ||||   |||    |||||          |||| |||||  |||||| ||||   g
 cguu   cugc   ugc    agcgg          UCUA AAAGG  GUGACG Uaag   a
a    uga    ggg   gaaa     cuaaaaucaU    U     AU      G    cac 

>ppc-mir-2237c (-42.10)   [ppc-miR-2237c:16-37]

-   -   ggu     cU      A      CG      ua   ugc 
 ggu auc   gccag  ACCCGU AUUUCU  GACAGU  gug   c
 ||| |||   |||||  |||||| ||||||  ||||||  |||    
 cca uag   cgguc  ugggca uaaaga  cuguca  cgc   g
a   a   aau     cu      a      -a      --   uua 

>ppc-mir-2272 (-68.90)   [ppc-miR-2272:26-48]

      -        --   ga     c        A -     CU       cgagag   a 
gcagua cccugcuc  gcu  gccgu UAGGGUAC C CCAUA  GAGCCGa      ugc u
|||||| ||||||||  |||  ||||| |||||||| | |||||  |||||||      ||| g
ugucau ggggcgag  cgg  cggcg aucccaug g gguau  uucggcu      gcg a
      a        ua   ag     u        c c     --       -----a   a 

>ppc-mir-2273 (-37.60)   [ppc-miR-2273:20-43]

u   ca    uu au           A C  C     C    Cga       
 ucu  ucga  g  cgucUCUCGAA G GG ACAUG CAUC   auuaca 
 |||  ||||  |  ||||||||||| | || ||||| ||||   ||||| u
 aga  agcu  c  guagagagcuu c cc uguac guag   uaguga 
a   ug    cu gc           g -  c     a    ---       

>ppc-mir-2241a-3 (-46.90)   [ppc-miR-2241a:67-88]

-    acu   ---u  -      uauu           c    uc   guc       aga 
 ggag   agg    cu auucga    gccuugaucuu agga  ccu   ugaacac   a
 ||||   |||    || ||||||    ||||||||||| ||||  |||   |||||||   a
 cuuc   ucc    ga ugagcu    cgggaCUAGAA UCCU  GGA   GCUUgug   u
c    auu   cuuc  c      ---u           C    UA   -AC       agu 

>ppc-mir-2241b-2 (-44.20)   [ppc-miR-2241b:59-80]

-   cu      uac   u        c    uc   guc       aga 
 gcu  auucga   gcc cugaucuu agga  ccu   ugaacac   a
 |||  ||||||   ||| |||||||| ||||  |||   |||||||   a
 cga  ugagcu   cgg gaCUAGAA UCCU  GGA   GCUUgug   u
u   -c      --u   -        C    UU   -AC       agu 

>ppc-mir-2241a-4 (-44.50)   [ppc-miR-2241a:59-80]

-   cu      uauu           c    uc   guc       aga 
 gcu  auucga    gccuugaucuu agga  ccu   ugaacac   a
 |||  ||||||    ||||||||||| ||||  |||   |||||||   a
 cga  ugagcu    cgggaCUAGAA UCCU  GGA   GCUUgug   u
u   -c      ---u           C    UA   -AC       agu 

>ppc-mir-2241b-3 (-43.50)   [ppc-miR-2241b:59-80]

-   cuu     uac   u        c    uc   guc       aga 
 gcu   uucga   gcc cugaucuu agga  ccu   ugaacac   a
 |||   |||||   ||| |||||||| ||||  |||   |||||||   a
 cga   gagcu   cgg gaCUAGAA UCCU  GGA   GCUUgug   u
u   -cu     --u   -        C    UU   -AC       agu 

>ppc-mir-2241a-5 (-37.70)   [ppc-miR-2241a:54-75]

-      uac   u        c    uc   guc      -   a 
 auucga   gcc cugaucuu agga  ccu   ugaaca ucg a
 ||||||   ||| |||||||| ||||  |||   |||||| |||  
 uaagcu   cgg gaCUAGAA UCCU  GGA   GCUUgu agu a
c      --c   -        C    UA   -AC      g   u 

>ppc-mir-2274 (-46.70)   [ppc-miR-2274:56-78]

-     -   uuu    a      u    -   -ga    au   -  ga 
 uggcu gag   ggcu cuccgu gacu gac   gggu  uca cu  u
 ||||| |||   |||| |||||| |||| |||   ||||  ||| ||  u
 accga cuc   ccga GAGGCA CUGA CUG   CCCA  Agu ga  g
a     a   --u    c      U    A   AUG    --   u  ac 

>ppc-mir-2233 (-37.80)   [ppc-miR-2233:58-79]

a     ---     -ga     c        c -  cg     a   -  cau 
 augag   ggagu   uugaa acgaugac g cu  acggg gca uc   u
 |||||   |||||   ||||| |||||||| | ||  ||||| ||| ||    
 uacuc   ccuca   aacuU UGCUAUUG C GA  UGCCC Cgu ag   g
-     uaa     acc     C        C U  --     A   u  agc 

>ppc-mir-2247 (-27.82)   [ppc-miR-2247:17-39]

-  cu     -u  c  cU     C    CU      U   gacga 
 uc  cgauu  ac ga  CUCCC AUUC  UGUGAU GCU     c
 ||  |||||  || ||  ||||| ||||  |||||| |||     u
 ag  gcuaa  ug cu  gaggg uaag  auacua uga     a
c  uc     cu  a  cg     a    uu      c   aauau 

>ppc-mir-279 (-42.51)   [ppc-miR-279:66-86]

   ug ug     uguu   u          ug   c       cuauccuu 
aug  c  ugucg    ccc gcuggguaug  ucu agucaug        g
|||  |  |||||    ||| ||||||||||  ||| |||||||        u
ugc  g  gcggu    ggg CGACUCAUAC  AGA UCAGUac        c
   gu uu     --uc   U          CU   -       ccauguug 

>ppc-mir-2239-2 (-43.40)   [ppc-miR-2239:60-80]

-    ---    aga   agcg     ---------u    c     cc      g    aga 
 gcga   gacg   gcg    ucgcc          aggu uuucc  cgcugc auuc   a
 ||||   ||||   |||    |||||          |||| |||||  |||||| ||||   g
 cguu   cugc   ugc    agcgg          UCUA AAAGG  GUGACG Uaag   a
a    uga    ggg   gaaa     cuaaaaucaU    U     AU      G    cac 

>ppc-mir-2241a-1 (-39.70)   [ppc-miR-2241a:54-75]

-      uac   u        c    uc   guc       -  a 
 auucga   gcc cugaucuu agga  ccu   ugaacac cg a
 ||||||   ||| |||||||| ||||  |||   ||||||| ||  
 uaagcu   cgg gaCUAGAA UCCU  GGA   GCUUgug gu a
c      --c   -        C    UA   -AC       a  u 

>ppc-mir-2241a-2 (-37.70)   [ppc-miR-2241a:54-75]

-      uac   u        c    uc   guc      -   a 
 auucga   gcc cugaucuu agga  ccu   ugaaca ucg a
 ||||||   ||| |||||||| ||||  |||   |||||| |||  
 uaagcu   cgg gaCUAGAA UCCU  GGA   GCUUgu agu a
c      --c   -        C    UA   -AC      g   u 

>ppc-mir-9 (-44.80)   [ppc-miR-9:29-50]

u   uuca        gucau      cU   UG   A       G         a 
 ucc    augggaca     uaucgu  CUU  GUU UCUAGCU UAUGauuug a
 |||    ||||||||     ||||||  |||  ||| ||||||| ||||||||| a
 agg    uacucugu     guagca  gaa  caa aggucga auacuaaau u
-   ----        -----      ag   gu   a       a         g 

>ppc-mir-2241c (-44.90)   [ppc-miR-2241c:59-80]

-   cu      uac   u        c    uc   guc       aga 
 gcu  auucga   gcc cugaucuu agga  ccu   ugaacac   a
 |||  ||||||   ||| |||||||| ||||  |||   |||||||   a
 cga  ugagcu   cgg gaCUAGAA UCCU  GGA   ACUUgug   u
u   -c      --u   -        C    UU   -AC       agu 

>ppc-mir-2241b-1 (-44.20)   [ppc-miR-2241b:59-80]

-   cu      uac   u        c    uc   guc       aga 
 gcu  auucga   gcc cugaucuu agga  ccu   ugaacac   a
 |||  ||||||   ||| |||||||| ||||  |||   |||||||   a
 cga  ugagcu   cgg gaCUAGAA UCCU  GGA   GCUUgug   u
u   -c      --u   -        C    UU   -AC       agu 

>osa-MIR2118a (-82.70)   [osa-miR2118a:131-152]

g           aaaga    c        ua      c     -a   a           --    ucu   caucua      cc ucc     g 
 ggaagaggaag     gagg uccaagag  guagga uggga  cau ugagaaagcau  gagc   auc      uccauc  c   cauuc c
 |||||||||||     |||| ||||||||  |||||| |||||  ||| |||||||||||  ||||   |||      ||||||  |   |||||  
 ccuucuccuuc     cuuc agguucuu  uAUCCU ACCCU  GUA GCUCUUuugua  cucg   uag      aggugg  g   guaag u
-           -----    a        gc      U     CC   -           uu    cuu   ------      ac -uu     a 

>osa-MIR2118b (-87.60)   [osa-miR2118b:120-141]

      ---             aaa   g  g         a            -a   a a         agcucu   -           gg 
augagc   gaggaagaggaag   gag ua ucuaagagc gugggaauggga  cau g ggaaaaaug      cag uguucacuucu  a
||||||   |||||||||||||   ||| || ||||||||| ||||||||||||  ||| | |||||||||      ||| |||||||||||   
uacucg   uuccuucuccuuc   cuc gu ggauucuug uAUCCUUACCCU  GUA C CCUUuuuau      guu auagguggagg  a
      acu             ---   -  -         c            CC   G -         gacucu   u           ug 

>osa-MIR2118c (-44.30)   [osa-miR2118c:76-97]

           -a   g a       cuaa   u       cu     ag 
ugggaauagga  cau g ggaaagc    agc aaauuuu  gcucc  u
|||||||||||  ||| | |||||||    ||| |||||||  |||||   
AUCCUUAUCCU  GUA C CCUUuug    ucg uuuagag  cgagg  a
           CC   G -       --ac   -       au     uu 

>osa-MIR2118d (-100.60)   [osa-miR2118d:117-138]

        ---           aaaa   g                       -a   g a       --cc     -cu    c       g 
guggauca   ggaagaggaag    gag gucugagagcggugggcauggga  cau g ggaaagc    aaacu   ucuu gccucua a
||||||||   |||||||||||    ||| |||||||||||||||||||||||  ||| | |||||||    |||||   |||| |||||||  
cgcuuggu   ccuucuccuuc    cuc uagacucuuguuAUCCGUACCCU  GUA U CCUUuug    uuugg   agag cggggau a
        uuu           ----   g                       CC   G -       uucc     uuu    u       c 

>osa-MIR2118e (-81.40)   [osa-miR2118e:121-142]

   g  u       a     aaaa   a          a c          -a   g a      aac         uuuc   -c      a 
agu ag caggaag ggaag    gag gucuaagagc g aggcauggga  cau g ggaaaa   auauauagu    uuc  ccucua a
||| || ||||||| |||||    ||| |||||||||| | ||||||||||  ||| | ||||||   |||||||||    |||  ||||||  
ucg uu guccuuc ccuuc    cuc cggauucuug c UCCGUACCCU  GUA C CCUUuu   ugugugucg    aag  ggagau g
   g  -       a     ----   a          a A          CC   A -      ---         uuua   uu      u 

>osa-MIR2118f (-83.20)   [osa-miR2118f:109-130]

 ug     ---      a     aacga   g uu   u                -a   g a        ug -  ucuaa       c 
g  agcca   gggaag ggaag     gag g  caa agcagugggaauggga  cau g ggaaagca  a gc     auuuccu c
|  |||||   |||||| |||||     ||| |  ||| ||||||||||||||||  ||| | ||||||||  | ||     |||||||  
c  ucggu   uccuuc ccuuc     cuc u  guu uuguuAUCCUUACCCU  GUA U CCUUuugu  u cg     uagagga a
 gu     ucu      c     -----   g gg   c                CC   G -        gu u  --ucc       a 

>osa-MIR2118g (-88.60)   [osa-miR2118g:101-122]

    -   -u            aca   g          u            -a   gg        -      ------     g 
guga acu  gggaagaggaag   gag gucuaagagc guaggaauggga  cau  aggaaagu gcaagc      uccau u
|||| |||  ||||||||||||   ||| |||||||||| ||||||||||||  |||  |||||||| ||||||      |||||  
cacu ugg  uccuucuccuuc   cuc uggauucuug uAUCCUUACCCU  GUA  UCCUUuca cguucg      aggug u
    c   uu            ---   g          u            CC   -A        a      guucag     u 

>osa-MIR2118h (-72.20)   [osa-miR2118h:109-130]

           aaaga   g   uc    au            -a   ga       u uaa       u    ---     a 
ggaagaggaag     gag auc  agaa  guaggaaugaga  cau  aggaaag c   gagcuaa gucu   ccucu c
|||||||||||     ||| |||  ||||  ||||||||||||  |||  ||||||| |   ||||||| ||||   ||||| a
ccuucuccuuc     cuc ugg  ucuu  uAUCCUUACUCU  GUA  UCCUUuu g   uuugauu caga   ggagg u
           -----   g   ga    gg            CC   -G       - uac       -    gcu     u 

>osa-MIR2118i (-100.00)   [osa-miR2118i:122-143]

      ---             aaauu                 c         -a    g        - ---u   gc      cu g     u 
gcaagu   aaggaagaggaag     gagugucuaagggcaau ggaauggga  cauu aggaaagc c    aca  gucuuu  c uccac a
||||||   |||||||||||||     ||||||||||||||||| |||||||||  |||| |||||||| |    |||  ||||||  | ||||| g
cguucg   uuccuucuccuuc     cucauagauuccuguuA CCUUACCCU  GUGA UCCUUuug g    ugu  uagaaa  g gggug a
      acu             -----                 U         CC    -        u uuuu   aa      ug g     a 

>osa-MIR2118j (-72.00)   [osa-miR2118j:109-130]

    --   --c   -        ga   -  u        a            -a   ga      --------       uaag     --     
ggug  agc   agg aagaggaa  gag ac cuaagagc guaggaauggga  cau  aggaaa        gccaaau    cucua  accu 
||||  |||   ||| ||||||||  ||| || |||||||| ||||||||||||  |||  ||||||        |||||||    |||||  ||| c
ccac  ucg   uuc uucuccuu  cuc ug gauucuug uAUCCUUACCCU  GUA  UCCUUu        ugguuua    gaggu  uggu 
    aa   acu   a        -g   g  -        a            CC   -G      uaguaguc       ----     ua     

>osa-MIR2118k (-89.40)   [osa-miR2118k:118-139]

        ---           aaaga        c     u            -c   ga        -cu     cuauug   -      g 
gcaagcca   ggaagaggaag     gaguaucu agaau gugggaaugaga  cau  aggaaagc   aagcu      ucc ccucua u
||||||||   |||||||||||     |||||||| ||||| ||||||||||||  |||  ||||||||   |||||      ||| ||||||  
cguucggu   ccuucuccuuc     cucgugga ucuug uAUCCUUACUCU  GUA  UCCUUuug   uuuga      agg ggaggu a
        uuu           -----        u     u            CC   -G        uac     -uucaa   u      u 

>osa-MIR2118l (-85.59)   [osa-miR2118l:121-142]

   g  uu            aaauu          g              -  a     a       cu    uauuuucu        aga 
agc ag  aggaagaggaag     gagugucuaa aacagugggaaugg aa cauua ggaaagc  acag        ucuccacu   a
||| ||  ||||||||||||     |||||||||| |||||||||||||| || ||||| |||||||  ||||        ||||||||   u
ucg uu  uccuucuccuuc     cucauagauu uuguuAUCCUUACC UU GUAAU CCUUuug  uguu        agaggugg   u
   g  -u            -----          g              C  C     -       --    uucuuaau        gga 

>osa-MIR2118m (-83.10)   [osa-miR2118m:108-129]

    --    --   -       --u  a   u        a            -a   ga       - --caa      -           
ggug  agcc  agg aagagga   ag gac cuaagagc guaggaauggga  cau  aggaaag c     accaag cucuaacucc 
||||  ||||  ||| |||||||   || ||| |||||||| ||||||||||||  |||  ||||||| |     |||||| ||||||||| u
ccac  ucgg  uuc uucuccu   uc cug gauucuug cAUCCUUACCCU  GUA  UCCUUuu g     ugguuu gagguugagg 
    aa    cu   a       ugu  -   -        a            CC   -G       a caaua      a           

>osa-MIR2118n (-102.00)   [osa-miR2118n:120-141]

      ---c             aagag  a  c       a            -a   -  ag       uaa             u      g 
gugagc    aggaagaggaaga     ag gc uaagagc gugggaauggga  cau gg  gaaagcc   aaaccaaauuucu ccucca c
||||||    |||||||||||||     || || ||||||| ||||||||||||  ||| ||  |||||||   ||||||||||||| ||||||  
cgcucg    uccuucuccuucu     uc cg auucuug uAUCCUUACCCU  GUA CC  Uuuuugg   uuugguuuaaagg ggaggu a
      acuu             -----  a  a       c            CC   G  CU       ---             u      a 

>osa-MIR2118o (-92.70)   [osa-miR2118o:107-128]

           aaaa   g                 a    - a   ga    au     -   -  c         c  g 
ggaagaggaag    gag gccaaggagcagugggc uggg g cau  agga  gcuua agc cc ucuccaauc uc c
|||||||||||    ||| ||||||||||||||||| |||| | |||  ||||  ||||| ||| || ||||||||| ||  
ccuucuccuuc    cuc ugguuccuuguuAUCCG ACCC C GUA  UCCU  ugagu uug gg agagguuag ag a
           ----   g                 A    U C   -G    Cu     a   a  u         -  u 

>osa-MIR2118p (-93.30)   [osa-miR2118p:115-136]

   g    ---           aaaa           ag              -a   g a     -gu     - ucu  uu          
gug guca   ggaagaggaag    gaguaccuaag  uagugggcauggga  cau g ggaaa   ucaaa c   uc  ccccucuaa 
||| ||||   |||||||||||    |||||||||||  ||||||||||||||  ||| | |||||   ||||| |   ||  |||||||| a
cac cggu   ccuucuccuuc    cucguggauuc  guuAUCCGUACCCU  GUA C CCUUu   aguuu g   ag  ggggggauu 
   a    uuc           ----           cu              CC   G -     ugu     u uuc  cu          

>osa-MIR2118q (-85.90)   [osa-miR2118q:118-139]

      ---             aaa   a    cu    g  a           -a   g a       c ga   u       cu     ag 
gugagc   agggaagaggaag   gag gccu  aaga cg ugggaauagga  cau g ggaaagc u  agc aaauuuu  acucc  u
||||||   |||||||||||||   ||| ||||  |||| || |||||||||||  ||| | ||||||| |  ||| |||||||  |||||   
uacucg   uuccuucuccuuc   cuc ugga  uucu gc AUCCUUAUCCU  GUA C CCUUuug g  ucg uuuaaag  ugagg  a
      aau             ---   a    --    a  c           CC   G -       c uc   -       au     cu 

>osa-MIR2118r (-81.00)   [osa-miR2118r:116-137]

 ug    ---      a     aaaa   gg         a            -a   --       gaacau   cu    uuc      a 
g  aguc   gggaag ggaag    gag  ucuaagagc gugggcauggga  cau  ggaggaa      gua  uuuc   ccucua a
|  ||||   |||||| |||||    |||  ||||||||| ||||||||||||  |||  |||||||      |||  ||||   ||||||  
c  ucgg   uccuuc ccuuc    cuc  ggauucuug cAUCCGUACCCU  GUA  CCUUuuu      cgu  agag   ggagau u
 gu    uug      c     ----   au         a            CC   AC       acgaau   uu    -uu      u 

>osa-MIR2275a (-62.10)   [osa-miR2275a:97-118]

      g   --g      caaac   aauc       gu     u      -     u gg          -------a    ag 
agcuua cua   gcauca     cau    uuuggca  ugaau ugaggu uugga g  accaaaucuu        cugc  a
|||||| |||   ||||||     |||    |||||||  ||||| |||||| ||||| |  ||||||||||        ||||   
ucgagu gau   cguggu     gug    agacugu  acuug ACUCUA AACCU C  UGGUUUagaa        gacg  c
      -   uaa      aauaa   --ac       ug     u      U     C UU          cgcaauua    uu 

>osa-MIR2275b (-49.60)   [osa-miR2275b:66-87]

u           u      -     u gg          -------a    ag 
 ggcagcugaau ugaggu uugga g  accaaaucuu        cugc  a
 ||||||||||| |||||| ||||| |  ||||||||||        ||||   
 cuguugacuug ACUCUA AACCU C  UGGUUUagaa        gacg  c
a           u      U     C UU          cagaacga    uu 

>zma-MIR2118a (-56.60)   [zma-miR2118a:86-107]

         a            -a   ga          --    u ugaa    u   c 
ccuaagggc guagggaugaga  cau  aggaacgcga  gugc c    uuuc cgu u
||||||||| ||||||||||||  |||  ||||||||||  |||| |    |||| ||| c
ggauucuug uAUCCUUACUCU  GUA  UCCUUgugcu  cacg g    ggag gca g
         g            CC   -G          gu    u uaca    -   c 

>zma-MIR2118b (-61.20)   [zma-miR2118b:88-109]

                    -a   g a     -   cau  uguu       u    cag 
uaagagcagugggaauggga  cau g ggaaa gcc   cc    gguuucc ccuc   a
||||||||||||||||||||  ||| | ||||| |||   ||    ||||||| ||||    
auucuuguuAUCCUUACCCU  GUA C CCUUu ugg   gg    ucgaagg ggag   a
                    CC   G -     g   cuu  ---u       u    cca 

>zma-MIR2118c (-69.10)   [zma-miR2118c:85-106]

 g         uaaa   g          a     c      -a   gg        - --u       u 
g aagaggaag    gau aucuaagagc guggg auggga  cau  aggaaggc c   augaggu g
| |||||||||    ||| |||||||||| ||||| ||||||  |||  |||||||| |   |||||||  
c uucuccuuc    cua uggauucuug uAUCC UACCCU  GUA  UCCUUcug g   uacucca a
 g         ----   g          c     U      CC   -A        u uuu       a 

>zma-MIR2118d (-82.40)   [zma-miR2118d:89-110]

      ---au g         a   g      g   a            aca  -g          ---      g 
gugagc     g aagaggaag gag gucuaa agc gugggcauggga   cg  aggaaggccu   augagu g
||||||     | ||||||||| ||| |||||| ||| ||||||||||||   ||  ||||||||||   |||||| a
cacucg     c uucuccuuc cuc uggauu uug uAUCCGUACCCU   GU  UCCUUcuggg   uacucg a
      guuuu g         -   g      g   c            -CC  AG          uuu      a 

>zma-MIR2118e (-62.80)   [zma-miR2118e:90-111]

    -     u     aaa   aa gu        a          -aa    ga          ----------      
ccaa ggaag ggaag   gag  u  cuaagagc gugggaaugg   acau  aggaaagcau          gaacu 
|||| ||||| |||||   |||  |  |||||||| ||||||||||   ||||  ||||||||||          |||| a
gguu ccuuc ccuuc   cuc  g  gauucuug cAUCCUUACC   UGUA  UCCUUuugua          cuugu 
    u     u     ---   -- ug        g          CUC    -G          agucuuuuuu      

>zma-MIR2118f (-54.60)   [zma-miR2118f:90-111]

                    -a   a      a  c     ---------          guac 
uaagagcagugggcauggga  cau ggggaa gc aaacu         uucuuuaccu    a
||||||||||||||||||||  ||| |||||| || |||||         ||||||||||     
auucuuguuAUCCGUACCUU  GUA CCCUUu ug uuuga         aagagguggg    a
                    CC   A      g  a     uuagagguc          aauc 

>zma-MIR2118g (-63.10)   [zma-miR2118g:90-111]

    ---     a   ugaa   uu        ac           -a   ga            uu u  a   a 
gcca   ggaaa gga    aga  cuaagagc  uaggaauagga  cau  aggaaagcauua  g gc ugg g
||||   ||||| |||    |||  ||||||||  |||||||||||  |||  ||||||||||||  | || |||  
cggu   ccuuu ccu    ucu  gauucucg  AUCCUUAUCCU  GUA  UCCUUuuguagu  c cg auu a
    auu     c   -ucc   ug        ga           CC   -G            -- -  g   u 

>zma-MIR2275a (-69.20)   [zma-miR2275a-5p:18-38] [zma-miR2275a-3p:81-102]

       -----      a      -                        --     gga   ag 
gucaggc     acugaa gugAGA GUUGGAGGAAAGCAAACCggcugg  guauc   uuc  c
|||||||     |||||| |||||| ||||||||||||||||||||||||  |||||   |||   
uagucug     ugacuu cACUCU UAACCUCCUUUUGUUUggcuggcc  cgugg   agg  a
       auagc      c      A                        gu     --g   ca 

>zma-MIR2275b (-36.80)   [zma-miR2275b-5p:13-33] [zma-miR2275b-3p:51-72]

    c   ag     -        C         --au  u 
ccau uga  ugAGG AUUAGAGG AACUGAACC    ca c
|||| |||  ||||| |||||||| |||||||||    || u
ggua gcu  ACUCU UAAUCUCC UUGACUUgg    gu a
    a   cu     A        U         aaac  u 

>zma-MIR2275c (-95.60)   [zma-miR2275c-5p:32-52] [zma-miR2275c-3p:193-214]

  a      uugau   u         ag     -          C       auucauagcuuguucgguuaugucuggaucgaagaggguuggaagguccuuucuaguuaaaauuaaau 
ag gagaug     aug gucauuuga  ugAGG AUUAGAGGGA UUGAACC                                                                    a
|| ||||||     ||| |||||||||  ||||| |||||||||| |||||||                                                                     
uc cucuac     uac cgguaaauu  ACUCU UAAUCUCCUU GACUUgg                                                                    g
  -      -----   c         cu     A          U       ggaaaaugaggguuacucucaaacaaaccaguguagaccuauccuccaauuucccuaaguuagagaaa 

>zma-MIR2275d (-39.40)   [zma-miR2275d-5p:18-38] [zma-miR2275d-3p:93-114]

gucaggcacuaaaa      -            A    Uaau    u    -ga  c    aug 
              gugAGA GUUGGAGGAAAG AAAC    cggc auca   uu ugca   g
              |||||| |||||||||||| ||||    |||| ||||   || ||||   c
              cACUCU UAAUCUCCUUUU UUUg    gccg uagu   aa acgu   u
---------acuuc      A            G    ccuu    u    aca  u    agu 

>hsa-mir-2276 (-42.30)   [hsa-miR-2276:54-75]

    -u  u   g   g -      u   c         gcu   u 
gugu  cu cca ucc c ccucug cac uugcagacg   uuc c
||||  || ||| ||| | |||||| ||| |||||||||   ||| u
uacg  ga ggu aGG G GGAGAC GUG AACGUCUgu   aag c
    uc  c   g   A C      U   -         ---   c 

>hsa-mir-2277 (-54.94)   [hsa-miR-2277:59-79]

gu     cu  g        g     u a      c     agcgcu 
  gcuuc  gc ggcugagc cgggc g gcgcug caguc      c
  |||||  || |||||||| ||||| | |||||| |||||       
  cgaag  cg ccggCUCG GUCCG C CGCGAC GUcgg      a
cu     --  g        -     U C      A     aauuac 

>hsa-mir-2278 (-43.90)   [hsa-miR-2278:16-37]

   - u     ug      AG       U    C     ---g   -  g 
gug c gcagg  uugGAG  CAGUGUG GUUG CUGGg    acu gu u
||| | |||||  ||||||  ||||||| |||| |||||    ||| ||  
uac g cgucc  gaccuc  gucacgu cgac gaccc    ugg ca g
   u c     ca      -a       u    a     acua   u  g 

>bna-MIR2111b (-51.70)   [bna-miR2111b:20-40] [bna-miR2111b*:83-103]

gcacuugau      cu         C         U        --ac   g      g 
         gaggaa  ggUAAUCUG AUCCUGAGG UUAaaaau    aua gcacau c
         ||||||  ||||||||| ||||||||| ||||||||    ||| ||||||  
         uuccuu  CCAUUAGAC UAGGGCUCC Aauuuuug    uau ugugua a
-aagucauu      cu         A         U        auau   g      a 

>bna-MIR2111a (-67.36)   [bna-miR2111a:27-47] [bna-miR2111a*:109-129]

gaugacaa    u        cc                    -UUU      -ugauuau       ---ac    c 
        guau ggugagga  gggUAAUCUGCAUCCUGAGG    Aaagcu        acgcaua     augc g
        |||| ||||||||  ||||||||||||||||||||    ||||||        |||||||     ||||  
        caua ucauuccu  uCCAUUAGGCGUAGGGCUCC    uuucga        uguguau     uacg a
-gcacaug    -        uc                    UGau      uaagauuu       caaua    c 

>dme-mir-2279 (-35.60)   [dme-miR-2279*:31-52] [dme-miR-2279:67-88]

-   gagagg      aaa     -uu     U         G            u  a 
 cgg      auuaug   gacaa   ugaaa UAAAUAUCU UGUGUGAAAUUa uu a
 |||      ||||||   |||||   ||||| ||||||||| |||||||||||| ||  
 gcc      uaauau   cuguu   auuUU AUUUAUAGA GCGCACUUUaau ag a
g   ----aa      -cc     uac     U         A            u  a 

>dme-mir-2280 (-38.00)   [dme-miR-2280:30-51] [dme-miR-2280*:69-90]

-    uuaa a   ug          g   UC         CAA    A     --     
 ucgu    g ugc  ugaauauccc uuu  UUAGCUUGG   UAAA UAUua  uuca 
 ||||    | |||  |||||||||| |||  |||||||||   |||| |||||  ||| c
 ggca    c acg  acuuauaggg aAG  AAUCGAACC   AUUU Augau  aaga 
a    ---c a   ug          g   UC         UUC    A     ca     

>dme-mir-2281 (-39.30)   [dme-miR-2281*:21-43] [dme-miR-2281:59-79]

      ----c       -ac  -   U  U      C          A   ua 
ggaugu     gagcagu   ac guA UA CUGCAG UGCAGAUGCA aug  u
||||||     |||||||   || ||| || |||||| |||||||||| |||   
ccuaua     uucgucg   ug CGU AU GACGUC AUGUCUAUgu uau  a
      cuuau       cua  a   U  -      U          c   gu 

>dme-mir-2282 (-36.80)   [dme-miR-2282:65-86]

g   gcauaac  u     uuu   -c          c        cc  gug  u 
 ccu       gc guggc   ccg  uucuauuuuu guucacug  uu   cu c
 |||       || |||||   |||  |||||||||| ||||||||  ||   || g
 gga       cg caccg   ggc  AAGAUAAAAA CGAGUGGC  aa   gg u
g   ---acuu  -     -uu   uU          U        UA  --a  u 

>dme-mir-2283 (-34.90)   [dme-miR-2283:10-32]

-         G           A    GAC   u   u 
 agcugcucc AAAAUAUCAUG AUAC   AAU aug g
 ||||||||| ||||||||||| ||||   ||| |||  
 ucgacgagg uuuuauagugc uaug   uua uac c
a         a           a    -au   c   a 

>bta-mir-2284i (-35.10)   [bta-miR-2284i:11-31]

u  c     uG       C       U    cu   gu 
 gg uuggc  AGAAGUU GUUCUGG GUUU  gua  a
 || |||||  ||||||| ||||||| ||||  |||   
 cc aaccg  uuuucaa uaaggcc caaa  uau  u
a  c     gu       u       -    ag   gc 

>bta-mir-2286 (-29.80)   [bta-miR-2286:46-67]

     c  g g -a  -g  a         gguag   a 
acgcc ug a g  gu  cg cccugcuuc     ccc u
||||| || | |  ||  || |||||||||     |||  
ugugg aU U U  CA  GC GGGACGAAG     ggg g
     c  G G AG  AG  -         ---ga   g 

>bta-mir-2287 (-41.90)   [bta-miR-2287:46-66]

       cac          u   g       cc    
aggcuca   gugcugccgc cag cucagug  agc 
|||||||   |||||||||| ||| |||||||  || c
ucugagu   CACGACGGUG GUC GGGUCac  uca 
       cUU          -   A       cc    

>bta-mir-2288 (-17.71)   [bta-miR-2288:43-62]

ccag      g -------      uu   ---a      acua 
    ggcaau u       ccacau  gcc    gcuuuc    a
    |||||| |       ||||||  |||    ||||||     
    cuguua a       GGUGUG  UGG    UGGAag    a
-gga      g uaaaUUU      --   AUGA      auac 

>bta-mir-2289 (-38.30)   [bta-miR-2289:47-66]

     cggu  uc              u u c  u     
gccuu    ug  gcgcgagcucgggc c g gc cgga 
|||||    ||  |||||||||||||| | | || ||| u
cgggg    ac  UGCGCUCGAGCUUG G C cg gccg 
     ---u  CC              U - U  -     

>bta-mir-2285a (-29.10)   [bta-miR-2285a:45-66]

             g         a    cug    au 
gguuggccaagaa uucauuuag uuuu   uaca  g
||||||||||||| ||||||||| ||||   ||||   
cuaacuGGUUCUU AAGUAAGUC AAAA   Augu  u
             A         -    ---    au 

>bta-mir-2290 (-35.90)   [bta-miR-2290:48-67]

      g       g   agca  g   ug   a  ---  u 
cucgcc uuauucg gga    gg cac  gag gc   gc u
|||||| ||||||| |||    || |||  ||| ||   ||  
gggcgg gguaggU UUU    CU GUG  CUC CG   cg c
      g       G   --GG  G   GU   -  uca  a 

>bta-mir-2291 (-29.40)   [bta-miR-2291:42-65]

      ua  cc       --    ug  c   aa    
cgccuu  cu  gcuucag  gcuu  ug cag  cca 
||||||  ||  |||||||  ||||  || |||  || g
gcggga  gG  CGGGGUC  CGAG  AU GUC  gga 
      gc  -A       AG    UG  A   Gg    

>bta-mir-2292 (-26.00)   [bta-miR-2292:43-64]

  u     a     c   g      ga    - a 
ca cucug uuucc caa cucaga  cagu c g
|| ||||| ||||| ||| ||||||  |||| | c
gu gagAC GAAGG GUU GAGUCU  Guua g c
  c     G     A   A      GA    a u 

>bta-mir-2293 (-15.20)   [bta-miR-2293:10-29]

u   uuc      --          --   AUUu   u 
 gug   aaUGAU  UUUGUUGUUU  UGU    gaa u
 |||   ||||||  ||||||||||  |||    |||  
 cac   uugcug  aggcgacagg  gcg    cuu u
a   --u      ac          uu   cuau   c 

>bta-mir-2294 (-38.00)   [bta-miR-2294:5-26]

   aG    U              -C    u 
ucu  AGGC GUAGAGGGCAUCUG  Ugcu c
|||  |||| ||||||||||||||  ||||  
aga  uucg cgucucccguaggc  acgg c
   ga    u              uc    u 

>bta-mir-2295 (-30.90)   [bta-miR-2295:43-63]

   -----        g  cu        c  c  c 
gcu     ccuuucuc cc  ccccgacc ug ag g
|||     |||||||| ||  |||||||| || || u
cgg     GGAAGGAG GG  GGGGCUgg ac uu c
   cUCUU        -  -U        -  u  u 

>bta-mir-2296 (-25.10)   [bta-miR-2296:39-59]

     --cua    --     c c   c   u   g 
gguuc     cagu  gagcc c guu ucc ccu u
|||||     ||||  ||||| | ||| ||| |||  
ccagg     gUCG  CUUGG G CAA AGG gga c
     ucaaa    UC     A U   C   U   a 

>bta-mir-2297 (-23.80)   [bta-miR-2297:10-29]

        aCAC    UU       -UCC    gcauu 
ggugccac    UCUU  UUCUUAU    Ugag     a
||||||||    ||||  |||||||    ||||      
cuacggug    agaa  gagaaua    acuc     u
        ----    uu       ugaa    agaac 

>bta-mir-2298 (-15.70)   [bta-miR-2298:44-63]

    ---ua uu    uu    ug ggaua      a 
uggu     a  caac  acau  g     guggag a
||||     |  ||||  ||||  |     ||||||  
aucg     U  GUUG  UGUA  C     uaccuu c
    uuACG UU    -U    GU ---AG      a 

>bta-mir-2299 (-37.40)   [bta-miR-2299-5p:12-32] [bta-miR-2299-3p:50-70]

       a   A               U  AAgu     u 
uaacuga cac CUGGAUUCAUUUCUC GA    ggauu u
||||||| ||| ||||||||||||||| ||    |||||  
guuggcu gUG GACCUAGGUAAGGGG CU    ucugg g
       a   C               C  ---g     u 

>bta-mir-2300a (-54.10)   [bta-miR-2300a-5p:9-30]

            C                    g   g 
caucuuauUCCU AGCUAGUUUUGUCUCCCugu ugu a
|||||||||||| |||||||||||||||||||| |||  
guagaauaagga ucgaucaaaacggagggacg aua u
            a                    a   c 

>bta-mir-2300b (-45.44)   [bta-miR-2300b-3p:47-68]

                      c       cuuaug 
ucuuauuccuuagcuaguuuug cucccug      a
|||||||||||||||||||||| |||||||       
agaauaAGGAGUCGAUCAAAAC GAGGGac      u
                      A       acacac 

>bta-mir-2284s (-29.04)   [bta-miR-2284s:2-23]

u             UG     A     uagaga 
 UGGCCCAAAAGUU  UUCGG Uuuuu      u
 |||||||||||||  ||||| |||||       
 acuggguuuucaa  aaguc agaaa      g
a             gu     c     uacaau 

>bta-mir-2301 (-18.40)   [bta-miR-2301:37-56]

    uuu     acuu   --uc     gac 
gccu   ggagg    acc    ucacu   a
||||   |||||    |||    |||||   g
cggg   UCUCC    UGG    GGUGg   u
    -uU     -CUU   UUUU     uca 

>bta-mir-2302 (-41.90)   [bta-miR-2302:46-66]

     u   c   c   - g   g  g     g    uu 
gggcg ggc ccg ggg c cug ac ccgcu ccuu  a
||||| ||| ||| ||| | ||| || ||||| ||||  g
cccgu cug GGC CCC G GAC UG GGCGA GGaa  g
     c   c   -   A -   G  -     -    ca 

>bta-mir-2303 (-24.10)   [bta-miR-2303:14-34]

     aua      -    -A    GU - -A   -AU   u 
guggg   ugcuuU CUGA  UGAU  C G  CUG   Ggg g
|||||   |||||| ||||  ||||  | |  |||   |||  
caucu   acgaga gacu  guug  g c  gac   ucc c
     --g      a    cg    ug g ga   guu   g 

>bta-mir-2285d (-19.66)   [bta-miR-2285d:46-67]

u          g     -  u --a    uccaua 
 uggccaaaag uucgu ca g   uuuc      a
 |||||||||| ||||| || |   ||||      a
 acCGGUUUUU AAGCA GU C   aaag      a
a          A     A  C AAA    uaacgu 

>bta-mir-2304 (-15.30)   [bta-miR-2304:45-64]

--c       ---uua       g   uu  aau     a 
   agaucau      auaacug aua  cu   uaugc u
   |||||||      ||||||| |||  ||   |||||  
   uuuagug      UGUUGGU UGU  Gg   auaug g
guc       UGUGUG       G   UG  ---     u 

>bta-mir-2305 (-26.40)   [bta-miR-2305:4-23]

---  uC G     -    GG -----       g g 
   gc  G GGGUG GCGG  A     GGGGGgc g g
   ||  | ||||| ||||  |     ||||||| |  
   cg  u ucuac cguc  u     ucccuug c c
cga  -u g     a    uu uuggg       g a 

>bta-mir-2306 (-27.50)   [bta-miR-2306:46-67]

   ca  uuu   a ca         u   u    -u  a 
ccu  ca   cug g  uccuggaug gug gccu  cu g
|||  ||   ||| |  ||||||||| ||| ||||  ||  
gga  gu   gac C  AGGAUCUAC CGU CGGA  ga a
   ag  -cu   - AC         C   C    Cc  a 

>bta-mir-2307 (-28.30)   [bta-miR-2307:46-67]

    - u  u   -  -a    -g      gc   c 
gggc c ga ggu ca  guca  cccggg  cug a
|||| | || ||| ||  ||||  ||||||  ||| u
ccCG G CU CCA GU  UAGU  gggucc  gac g
    A U  C   A  AG    GA      --   c 

>bta-mir-2308 (-28.60)   [bta-miR-2308:44-65]

   -agu -       -a       c  gugc   c 
cuc    c cucugcu  aagccca cu    ucc g
|||    | |||||||  ||||||| ||    ||| c
gag    G GAGACGA  UUCGGGU ga    agg c
   gAAU A       CG       U  ---a   u 

>bta-mir-2309 (-45.50)   [bta-miR-2309:11-33]

    -      U      G G    A    -    g g 
aggc agcagg GUGAGG U GUGG CGGC AGGG u g
|||| |||||| |||||| | |||| |||| |||| | g
ucug ucgucc cacucc g cacc gccg uccu g c
    g      -      g a    -    g    g a 

>bta-mir-2310 (-21.50)   [bta-miR-2310:9-29]

     uuu UUUU   UG     G UU      
gguuu   G    GUU  GGUUU U  CUgga 
|||||   |    |||  ||||| |  |||| u
ccaag   c    cag  ccaaa a  gaccg 
     ucu uguc   gu     - gg      

>bta-mir-1603 (-19.20)   [bta-miR-1603:45-64]

   u       ccucacu     cc    uc   -   u 
ggu ggggaaa       cauaa  agca  cca ugu u
||| |||||||       |||||  ||||  ||| |||  
cca cuccUUU       GUGUU  UUGU  GGU aca u
   -       -----UU     --    UU   G   u 

>bta-mir-2284l (-23.90)   [bta-miR-2284l:7-26]

u   c        G   C          cccc     
 ggc aAAAAGUU GUU GGGUUUUUuc    caua 
 ||| |||||||| ||| ||||||||||    ||| c
 ccg uuuuucaa cga cucaaaaagg    guag 
a   a        a   a          cauu     

>bta-mir-2489 (-20.50)   [bta-miR-2489:12-33]

u       uucA     C   -  A  U      uuu   cu 
 guugugu    AAUGA AGG GG CA GAGUUU   aau  g
 |||||||    ||||| ||| || || ||||||   |||   
 caauaca    uuacu ucc cc gu uucaaa   uug  g
g       ----     -   u  c  u      --u   ac 

>bta-mir-2311 (-24.20)   [bta-miR-2311:2-24]

gUA        -  G U    G    u 
   CUGAAACU GU C CGUG UGUg g
   |||||||| || | |||| |||| c
   gacuuuga cg g gcac acau u
-ca        u  g u    g    g 

>bta-mir-2284j (-25.40)   [bta-miR-2284j:12-31]

     -ug       A    C   CA    -   caa 
guugg   ggccGAA AGUU GUU  GGUU UUc   g
|||||   ||||||| |||| |||  |||| |||   u
uaacc   ccgguuu ucaa cag  ccaa aag   u
     cga       g    a   ac    u   aca 

>bta-mir-2312 (-28.30)   [bta-miR-2312:44-63]

u   gcu    a  c       cu     a     u 
 ugg   ggcc aa aguuugu  ggguu uucug a
 |||   |||| || |||||||  ||||| ||||| a
 acc   ccgg UU UCAAGCA  UCCAA AAggu c
a   -ac    C  U       AG     -     u 

>bta-mir-2313 (-37.10)   [bta-miR-2313:8-29] [bta-miR-2313*:50-69]

       A       -  A    CAA    --g gc  c 
gggcugg GUGCAGC UG GGAC   GGCA   g  ug a
||||||| ||||||| || ||||   ||||   |  ||  
uccggCC UACGUCG AC CUUG   CCgu   c  ac u
       G       C  -    --A    aca uu  g 

>bta-mir-2284t (-39.46)   [bta-miR-2284t*:8-28] [bta-miR-2284t:48-69]

                 C           cauagc 
guuggccGAAACAUUCA UCGGGUUUUUc      a
||||||||||||||||| |||||||||||      u
caacCGGUUUUGUAAGU AGCUCAAAaag      c
                 A           acaauu 

>bta-mir-2285b (-37.00)   [bta-miR-2285b:46-67]

                    ca           cu 
guuggccgaaaaguucauuc  guuuuucugua  a
||||||||||||||||||||  |||||||||||   
caaucGGUUUUUCAAGUGAG  UAAAAggguau  c
                    UC           uc 

>bta-mir-2314 (-23.10)   [bta-miR-2314:2-22]

     CA   UGA  -   GAC  c      u 
cUGCC  UGA   CU GCU   Cu ggucuc g
|||||  |||   || |||   || ||||||  
gaugg  acu   ga cga   ga ccaggg c
     ag   -ug  g   --a  -      a 

>bta-mir-2315 (-15.60)   [bta-miR-2315:45-65]

u     ---aaua  aa  c  a   uuuaag      - u 
 ucuga       cc  ag au caa      uugcug c u
 |||||       ||  || || |||      |||||| | a
 agacu       gg  UC UA GUU      GACGAc g u
a     aauuuca  GG  A  G   -UUUAA      a u 

>bta-mir-2284d (-21.40)   [bta-miR-2284d:11-32]

u a    ac     A   C   A          uc  g 
 g guug  cAAAA GUU GUU GGGUUUUUCu  aa c
 | ||||  ||||| ||| ||| ||||||||||  ||  
 c caac  guuuu caa caa cucaaaaggg  uu u
a c    cu     c   a   g          ca  c 

>bta-mir-2316 (-36.30)   [bta-miR-2316:10-32]

     -ucccA       CU  A   C     Ga   u 
cgcua      CUCCGGC  GG CUG GGCGG  ggc g
|||||      |||||||  || ||| |||||  |||  
gugau      gaggucg  cc gac ccgcc  cug c
     cuaucc       uu  c   -     -g   u 

>bta-mir-2317 (-22.30)   [bta-miR-2317:5-27]

   -       G -UGACAAUACC           c 
agu uCUCUGU A           UGAUAgaggua u
||| ||||||| |           |||||||||||  
uca agagaua u           acuaucuccau g
   u       g ccauaguccau           a 

>bta-mir-1343 (-53.00)   [bta-miR-1343:12-33] [bta-miR-1343*:49-68]

    u   u  U    A    C       -C     ucu 
ggcu cgg gc GGGG GCGG CCCCGGG  GGGcc   g
|||| ||| || |||| |||| |||||||  |||||    
ccgg gcc cg UCUC CGCC GGGGUCC  cccgg   c
    -   u  C    A    C       UC     ucu 

>bta-mir-2318 (-17.70)   [bta-miR-2318:14-35]

u u   -  acc     UAU  U AA    C   CCc   c 
 g cag ga   ccGUG   GA G  UUAU UGA   ggc g
 | ||| ||   |||||   || |  |||| |||   |||  
 c guc cu   gguac   cu c  aaug acu   ccg u
a -   a  cuc     --u  u gc    u   -cu   u 

>bta-mir-2319a (-47.10)   [bta-miR-2319a:47-68]

                            a   cuua 
uauguagcuaagugccuaauacagagua cau    u
|||||||||||||||||||||||||||| |||    g
auacaucGAUUCACGGAUUAUGUCUCAU gua    a
                            C   cucu 

>bta-mir-2319b (-49.60)   [bta-miR-2319b:46-66]

u                             gaga 
 guagcuaagugccuaauacagaguagcau    u
 |||||||||||||||||||||||||||||    c
 caucGAUUCACGGAUUAUGUCUCAUugua    a
a                             gaau 

>bta-mir-2320 (-42.40)   [bta-miR-2320:9-31] [bta-miR-2320*:48-69]

u u     UG        U   GC        --g  a 
 g cccca  GCACAGGG CCA  UGUCGGCc   ug u
 | |||||  |||||||| |||  ||||||||   || a
 c ggggU  UGUGUCCC GGU  GUAGCUgg   gc c
g -     UU        U   -A        gua  c 

>bta-mir-2284n (-30.00)   [bta-miR-2284n:7-27]

u          G   A UC        a  a   c 
 uggccAAAAA UUU U  GGGUUUUU cc uaa c
 |||||||||| ||| |  |||||||| || |||  
 accgguuuuu aga a  cccaaaaa gg auu u
a          g   c ga        -  -   g 

>bta-mir-2284g (-20.70)   [bta-miR-2284g:12-31]

u  a      c      UCGUU   --C           
 gg uugguc AAAAGU     CGG   UUUUUcugua 
 || |||||| ||||||     |||   ||||||||| a
 cc aaccgg uuuuca     gcc   aaaaagguac 
a  c      a      ----c   uaa           

>bta-mir-2321 (-17.00)   [bta-miR-2321:2-21]

u G    --U       U    Guu     ccu 
 U UCGG   UGGUUUU GUUU   ugcuu   c
 | ||||   ||||||| ||||   |||||   u
 a aguc   accgaga caaa   acgga   c
g g    ugc       -    auu     uca 

>bta-mir-1721 (-19.60)   [bta-miR-1721:41-62]

      - ----       uu      a    -  c 
ccuguc c    ucacauc  uuugug uuau au u
|||||| |    |||||||  |||||| |||| ||  
ggguAG G    AGUGUAG  AGACAC aaua ug g
      A UCUU       -U      -    c  g 

>bta-mir-2322 (-46.30)   [bta-miR-2322:4-26] [bta-miR-2322*:46-67]

   AA      G                   -  a 
ggg  GAAAGC AAGUCCAUCCUCAUccuau ag c
|||  |||||| ||||||||||||||||||| ||  
ccc  CUUUCG UUCAGGUAGGAGUAggaua uc a
   -G      A                   g  a 

>bta-mir-2323 (-34.90)   [bta-miR-2323:9-31]

g       UGAC      A     A     Ca uc  ug 
 ggcggcc    CUGAUC UGCUU CUGAG  g  ca  u
 |||||||    |||||| ||||| |||||  |  ||   
 ucgccgg    gacugg acgaa gacuc  c  gu  g
u       --uc      -     g     -c uc  uc 

>bta-mir-2324 (-20.40)   [bta-miR-2324:44-66]

-------c   -       ugu  uc   a      c  c 
        gcu cauuguc   cu  cuc cagaug cu u
        ||| |||||||   ||  ||| |||||| || a
        CGG GUGACGG   GG  GGG GUuuac ga a
gugugUGU   U       ---  UU   -      u  a 

>bta-mir-2325a (-16.81)   [bta-miR-2325a:41-60]

    a u  -  aaa    -------  ug       aa  c 
gggu c cu ca   cuug       uu  gauagaa  cu u
|||| | || ||   ||||       ||  |||||||  ||  
ucca g ga gu   gaaC       GG  UUGUUUU  gg u
    - u  c  --g    UUUUUUU  GU       Gg  g 

>bta-mir-2326 (-18.12)   [bta-miR-2326:45-64]

    ---    ggcggga        --au    gacau 
ucug   uggu       uagaggag    gggu     a
||||   ||||       ||||||||    ||||     c
agac   acuA       GUCUCCUU    CCca     a
    uag    --AAAAG        CCCC    accga 

>bta-mir-2327 (-30.70)   [bta-miR-2327:44-67]

   c ug     - gc   -      ---------      
ccu c  gugcu g  ucu gccccc         caugu 
||| |  ||||| |  ||| ||||||         |||| c
gga G  CACGA C  AGA CGGGGG         guacc 
   C GU     A UC   G      Augaacccc      

>bta-mir-2328 (-52.12)   [bta-miR-2328:10-30] [bta-miR-2328*:51-71]

        c           U  U   C     uuggu 
gggcuccu GCCCCCUCCCU GG CGC GGcug     c
|||||||| ||||||||||| || ||| |||||     c
cucggggA CGGGGGAGGGG CU GCG Cugac     u
        C           U  -   U     uguuu 

>bta-mir-2329-1 (-51.80)   [bta-miR-2329-3p:45-66]

                             aua 
acuuaucagcucacaucacagaucagauc   u
|||||||||||||||||||||||||||||    
UGAAUAGUCGAGUGUAGUGUCUagucuag   c
                             gac 

>bta-mir-2329-2 (-51.20)   [bta-miR-2329-5p:1-22]

                             cug 
ACUUAUCAGCUCACAUCACAGAucagauc   g
|||||||||||||||||||||||||||||    
ugaauagucgaguguagugucuagucuag   a
                             uau 

>bta-mir-2330 (-44.60)   [bta-miR-2330:11-33] [bta-miR-2330*:52-71]

   u         G UU   CA       C      ucca 
gag gagggaUGG C  GGG  GUGAGGA UGGggg    g
||| ||||||||| |  |||  ||||||| ||||||     
uuc cuccCUGCC G  CCC  CAUUCCU Acccuc    c
   -         G -U   --       C      uacc 

>bta-mir-2331 (-32.40)   [bta-miR-2331:5-27] [bta-miR-2331*:48-68]

          CG  C      AU    -----g   a 
ggguGGCUUC  UG CUGCAG  GUCU      uga u
||||||||||  || ||||||  ||||      ||| u
cccAUCGAAG  AC GACGUC  CAga      acu c
          AA  C      -C    gucgga   c 

>bta-mir-2332 (-24.40)   [bta-miR-2332:44-67]

cauagca -      c   acgu      cu   u 
       g cuccag acc    gacuga  gcc g
       | |||||| |||    ||||||  |||  
       C GAGGUU UGG    UUGGCu  cgg g
-guGAAA A      C   -AAU      cu   a 

>bta-mir-2333 (-37.20)   [bta-miR-2333:4-24]

u         A     CA       uu  u 
 uaGCAAUGC GACUC  GGGCCCu  gg u
 ||||||||| |||||  |||||||  || g
 auuguuacg cugag  cccgggg  uc a
a         a     ag       cc  g 

>bta-mir-2334 (-32.20)   [bta-miR-2334:45-66]

   a  -     g       c a    gac   --u g 
gga gc aggug aggacac g cugu   ucc   g g
||| || ||||| ||||||| | ||||   |||   |  
ccu cg UCCAC UCUUGUG C GACG   Agg   c g
   -  a     -       U C    -AC   ccu a 

>bta-mir-2335 (-15.80)   [bta-miR-2335:3-24]

     U   G    CU      A   -au    uug 
guAGA AAU AUGA  AACUGA Uug   gacu   g
||||| ||| ||||  |||||| |||   ||||    
uaucu uua uacu  uugacu aau   uugg   g
     -   g    --      -   gau    uac 

>bta-mir-2336 (-36.90)   [bta-miR-2336:47-68]

                    c  a     u      c 
aaauagaaagcauuucaaag ua gguua gggugg a
|||||||||||||||||||| || ||||| ||||||  
uuugucuuUCGUGAAGUUUC AU CCAAU ccuauu a
                    A  G     C      u 

>bta-mir-2337 (-17.90)   [bta-miR-2337:16-35]

u    ggu   cuu       UCU      UUUUUu  u 
 ucac   gcu   gGUGGUU   UAUUCC      cu u
 ||||   |||   |||||||   ||||||      ||  
 ggug   uga   uuaucaa   auaagg      ga a
g    aau   aau       uuu      uguauu  a 

>bta-mir-199c (-20.70)   [bta-miR-199c:46-65]

    gu  uucuua        uu      ----     a 
auca  gg      cggugugu  gcuacu    auuga a
||||  ||      ||||||||  ||||||    |||||  
uagu  uc      GUUACACG  UGAUGA    ugacu c
    gu  --uucG        UC      CAUg     g 

>bta-mir-2338 (-44.90)   [bta-miR-2338:6-28]

     AG    A GA       U     u     u 
caggg  GCUG G  CAGGGGC GACGU cauuu c
|||||  |||| |  ||||||| ||||| ||||| u
guccc  cgac c  guccccg cugcg gugaa a
     ca    a gg       u     u     c 

>bta-mir-2339 (-27.40)   [bta-miR-2339:46-65]

    cu      c     --c     cu     cugc 
aggu  gggcuc ugcug   ccagu  gaggu    a
||||  |||||| |||||   |||||  |||||    c
uuca  cUCGAG ACGAU   GGUCA  CUccg    u
    cc      -     CCA     --     uuuc 

>bta-mir-1814a (-24.40)   [bta-miR-1814a:7-26]

    aa    ----U       U             c 
aagc  AGGU     UUUUGGU UUGUUUUcuguaa a
||||  ||||     ||||||| ||||||||||||| a
uucg  ucca     gaaauca agcaagagacguu g
    -a    cggac       u             u 

>bta-mir-2340 (-19.00)   [bta-miR-2340:45-66]

aca  u  aag a        ---a   u   ----a   ga 
   ac cc   g uacgaggc    agg aag     uca  g
   || ||   | ||||||||    ||| |||     |||   
   ug gg   c GUGUUCUG    UCC UUC     agu  u
-ug  u  -ga -        GUGG   C   AGGag   ag 

>bta-mir-2341 (-18.70)   [bta-miR-2341:2-23]

u        AGAAA     --  G    cu 
 CAGUAGGU     GAAGG  CU Agac  u
 ||||||||     |||||  || ||||  u
 gucauuca     cuucc  ga uuug  c
g        --gaa     ua  g    ac 

>bta-mir-2342 (-32.01)   [bta-miR-2342:42-62]

g      -------     g  g         u   a     
 gagcua       ggcgu ga cuucuguag ggu gugu 
 ||||||       ||||| || ||||||||| ||| ||| u
 uucggu       UCGCG UU GAAGGCGUC Cca cacc 
u      uuagcUU     G  -         U   -     

>bta-mir-2343 (-24.40)   [bta-miR-2343:11-32]

cugacaag   A -   A       GA    AUcca  g  u 
        ggA G GGG GACGGUG  ACUU     ga ug g
        ||| | ||| |||||||  ||||     || ||  
        ccu c ccc cugucac  ugga     uu au u
------ga   c a   -       ag    ----g  g  g 

>bta-mir-2344 (-21.10)   [bta-miR-2344:35-58]

        cu    c   ag  g  u     
gucgauuc  gucc ucg  gu gu cccu 
||||||||  |||| |||  || || ||| g
cagUUGAG  UAGG GGU  UA CA Gggg 
        UC    C   AG  G  C     

>bta-mir-2345 (-21.70)   [bta-miR-2345:39-58]

       c     -cu   g  u     aga 
cugugga auagg   aca ac ggcug   a
||||||| |||||   ||| || |||||   u
gacacCU UAUUC   UGU UG UUGac   g
       U     UUU   G  -     auu 

>bta-mir-2346 (-39.30)   [bta-miR-2346:14-35]

   uu  a  -   A -U  U           U    - uu 
ggg  ug cc ggc C  GA GUGAAGGUGGU UGGC c  g
|||  || || ||| |  || ||||||||||| |||| |   
ccc  gc gg ccg g  cu cauuuccaccg accg g  a
   uu  -  a   a uc  -           u    u uu 

>bta-mir-2347 (-17.60)   [bta-miR-2347:2-22]

   CA    -A   A     AACc  caa 
cUG  GAGG  ACA GGCUG    cc   c
|||  ||||  ||| |||||    ||    
gac  cucu  ugu ccgac    gg   a
   ac    cg   c     agua  agc 

>bta-mir-2348 (-42.90)   [bta-miR-2348:14-34]

   cu   c    UUC           AGCGG    uu  c 
cug  ggc gagg   GGGUGGUGUGG     CCcu  gc c
|||  ||| ||||   |||||||||||     ||||  ||  
gac  ccg cucc   cccgccgcacu     ggga  cg g
   cc   u    -ca           ----g    cu  g 

>bta-mir-2349 (-30.70)   [bta-miR-2349:38-60]

-u  aa c          ug  -  -   g  a 
  gg  g agucugaggc  ga gu cca ug g
  ||  | ||||||||||  || || ||| || g
  cc  C UCAGACUCUG  CU CA GGU ac a
ac  aA -          GU  U  C   g  a 

>bta-mir-2284p (-33.72)   [bta-miR-2284p:11-31]

u         U            G  A     aauaa 
 ggguuggcu GAAAGUUUGUUC GG UUUUc     u
 ||||||||| |||||||||||| || |||||     a
 cucgaccgg uuuuuaaacaag cc aaaag     g
a         u            a  a     cauuc 

>bta-mir-2350 (-22.70)   [bta-miR-2350:11-32]

    cucuc    CUCCU    CU     CA   u   ca 
ggcu     uCAG     GUUU  CUCCU  Gcu ccc  c
||||     ||||     ||||  |||||  ||| |||   
ccgg     aguc     cagg  gagga  cga ggg  c
    --ugc    --ucc    cc     --   c   aa 

>bta-mir-2351 (-15.80)   [bta-miR-2351:16-35]

        -  -u   a      AUUG       UU  a 
uaggccua cu  uuu AUAGUU    UAUUGUG  Uu g
|||||||| ||  ||| ||||||    |||||||  ||  
auuugggu ga  aag uauuaa    gugacau  aa a
        c  cu   g      --aa       gg  a 

>bta-mir-2352 (-23.40)   [bta-miR-2352:10-32]

u     gugAA    ---A          UUGC  gg   
 gcuuu     ACUG    AAGAACAGGA    UG  ag 
 |||||     ||||    ||||||||||    ||  | a
 cgaaa     ugac    uucuuguccu    ac  uu 
a     auaga    auca          ucuu  uu   

>bta-mir-2353 (-47.90)   [bta-miR-2353:46-68]

        g  c       -      -a       - c 
aguacagu ag ccucugu cugcag  ugcggag c c
|||||||| || ||||||| ||||||  ||||||| |  
ucaugucG UC GGAGACA GACGUC  AUgccuc g g
        G  A       U      CG       c c 

>bta-mir-2354 (-15.60)   [bta-miR-2354:12-32]

   c    aa    U   UU U  U       aa  au 
gag agau  uUAG AGG  G GU GUUUAGU  uu  u
||| ||||  |||| |||  | || |||||||  ||   
uuc ucug  aauc ucc  u ca cgaaucg  aa  a
   a    -a    u   cu -  -       ag  au 

>bta-mir-2355 (-24.80)   [bta-miR-2355*:7-29] [bta-miR-2355:47-68]

---------guc   C       -   U     AU       uau 
            auc CCAGAUA CAA GGACA  AUGCuau   a
            ||| ||||||| ||| |||||  |||||||   a
            UAG GGUUUGU GUU CCUGU  UAcggug   u
cagucgucauaa   A       C   -     --       ugu 

>bta-mir-2356 (-22.10)   [bta-miR-2356:12-34]

     cu      UUGUGA      A    GA     c 
ggaag  uuucUC      UGAGGG GUCU  GGagc c
|||||  ||||||      |||||| ||||  |||||  
ucuuc  gaaggg      auuucc uagg  cuuug a
     ac      ----ug      g    -a     u 

>bta-mir-2357 (-35.50)   [bta-miR-2357:12-35]

cug       cUU  U         AGCAUGUGAGggacc 
   cugccuu   GG CUGGCACAG               a
   |||||||   || |||||||||                
   ggcggag   cc gaccguguc               c
gaa       --u  -         cacaccucgacguca 

>bta-mir-2284u (-26.40)   [bta-miR-2284u:43-63]

      ----u  u     -c    c   u  gcuag   c 
gccaac     gc aggag  ccga acg ac     ggg u
||||||     || |||||  |||| ||| ||     |||  
cgguug     cg UCUUU  GGCU UGC UG     ccc g
      uaacc  -     UU    -   U  -AAAA   g 

>bta-mir-2358 (-23.40)   [bta-miR-2358:44-64]

       a       ---cuc   u    uuu    
uccauga cccaacu      uag caca   gcu 
||||||| |||||||      ||| ||||   || u
AGGUGCU GGGUUGA      auc gugu   cgg 
       A       UAAACC   -    ---    

>bta-mir-2359 (-15.70)   [bta-miR-2359:15-34]

   -ucu      auGAUU        UU  --U    auc 
gca    agugca      GUGUUGUU  CU   UUUa   u
|||    ||||||      ||||||||  ||   ||||   u
ugu    uuaugu      uacgauag  ga   aaau   u
   ucuu      ---ggu        gg  ucu    aau 

>bta-mir-2360 (-49.90)   [bta-miR-2360:45-66]

   c       g     gcg     u      - gg 
ggg gagcgcc ccagu   ccugc ccgcgc c  c
||| ||||||| |||||   ||||| |||||| |   
ccc cUUGCGG GGUCG   GGACG GGCgcg g  a
   -       A     -GA     -      a gg 

>bta-mir-2361 (-15.80)   [bta-miR-2361:13-32]

u     caugc     U        U   ----U      u 
 gguua     aGUUG GUUGUUUU UUU     GUagaa c
 |||||     ||||| |||||||| |||     |||||| u
 ccaau     ucaau uaacaaag gag     uauuuu g
a     -----     u        u   ucggu      u 

>bta-mir-2362 (-23.90)   [bta-miR-2362:41-63]

          uguuggu   g   -   u   -   u 
cuuaggucag       aug uuu uca cag ggu u
||||||||||       ||| ||| ||| ||| |||  
gaauCCAGUC       UGC AGG AGU GUC Ccg a
          ------U   G   U   -   A   u 

>bta-mir-2363-1 (-47.40)   [bta-miR-2363:47-68]

                               ua  g 
ucuaagaaauauuccuugaccaaguugaaau  au a
|||||||||||||||||||||||||||||||  ||  
agauucUUUAUAAGGAACUGGUUCAACUuug  ua g
                               ga  a 

>bta-mir-2363-2 (-41.50)   [bta-miR-2363:46-67]

                             cc  uu 
cuaagaaauauuccuugaccaaguugaaa  ua  c
|||||||||||||||||||||||||||||  ||  u
gauucUUUAUAAGGAACUGGUUCAACUuu  au  c
                             -a  ua 

>bta-mir-2364 (-35.30)   [bta-miR-2364:9-31]

     g uU     U  A   AU         - g  g 
ucugu c  CUCUG GG UGG  GUGGGCAGu u ug c
||||| |  ||||| || |||  ||||||||| | ||  
agacg g  gagac cc gcc  cgcucguca g ac u
     g -u     c  a   --         c g  c 

>bta-mir-2365 (-15.70)   [bta-miR-2365:45-64]

    --gaaa     -ag      g  augauu    g  ua 
guga      uuccu   gagaga gg      aaaa ug  u
||||      |||||   |||||| ||      |||| ||   
uacu      gagga   UUCUUU UC      UUUU Ac  a
    aauauc     CUA      G  ----GU    G  uc 

>bta-mir-2366 (-34.16)   [bta-miR-2366:45-66]

    g  gu     ug    a c     aaagag 
cccc gg  ccucu  ucug g cccag      g
|||| ||  |||||  |||| | |||||      a
gggG UC  GGAGA  AGAC C GGGUc      g
    G  UG     --    A U     gugaga 

>bta-mir-2284f (-29.60)   [bta-miR-2284f:6-25]

           C      AU       g a 
gccaaAAAGUU GUUCGG  UUUUCcg a g
||||||||||| ||||||  ||||||| | c
cgguuuuucaa caagcc  aaaaggu u u
           a      -c       g g 

>bta-mir-2284a (-29.60)   [bta-miR-2284a:10-29]

   ua   u       -C              u  ug 
ggu  gcc AAAAGUU  GUUGGGGUUUUUcu ua  a
|||  ||| |||||||  |||||||||||||| ||   
cca  cgg uuuuuaa  caaucccaagaagg au  u
   cc   -       aa              u  uc 

>bta-mir-2284k (-18.00)   [bta-miR-2284k:10-30]

  u  a       A    GGUCG       cug  aca 
ag ug ccaGAAA GUUC     GGUUUUU   ca   u
|| || ||||||| ||||     |||||||   ||    
uc ac gguuuuu caag     ccaaaaa   gu   c
  c  c       -    -aaaa       --a  aau 

>bta-mir-1814b (-19.00)   [bta-miR-1814b:13-32]

    agaa  gg           UUUU    G   uuu    
uagg    gg  AGAUUGUUUAG    GUUU uag   gcu 
||||    ||  |||||||||||    |||| |||   || c
aucc    uu  ucugacgaauc    uaga auu   cga 
    --ag  aa           --uu    g   -uu    

>bta-mir-2367 (-30.70)   [bta-miR-2367:12-34] [bta-miR-2367*:49-69]

         a AC       CUCA   -A          a 
cuguuuggu c  CCUGUAA    GCC  UCAGAGuuuu u
||||||||| |  |||||||    |||  ||||||||||  
gacggacua G  GGACAUU    CGG  AGUUucaaga g
         c AA       --CA   AA          u 

>bta-mir-2368 (-40.00)   [bta-miR-2368:14-33] [bta-miR-2368*:51-70]

     g -   a       G   C   GU -    g  uua 
guggg g agg gcAGAGG UGG CUG  A UCUG uc   g
||||| | ||| ||||||| ||| |||  | |||| ||   u
caccc u ucc CGUCUCC ACC GAC  U Agac ag   a
     g g   C       -   A   UG C    -  uuu 

>bta-mir-2369 (-20.60)   [bta-miR-2369:42-62]

      u      ----ca    uu      ugu   c 
guggaa agaaau      ucau  uuuaca   ggc a
|||||| ||||||      ||||  ||||||   |||  
caccuu ucUUUG      GGUG  GGAUGu   ucg u
      -      UUUUUG    UU      ---   g 

>bta-mir-2370 (-32.40)   [bta-miR-2370:12-33] [bta-miR-2370*:48-68]

        uu    GA   U        G     accc 
aauaggga  gUGG  AAA GAAAGUUG UUAUg    u
||||||||  ||||  ||| |||||||| |||||    c
uuauuccu  cACC  UUU CUUUCAAC AAUac    c
        uc    UC   C        G     cccu 

>bta-mir-2371 (-17.50)   [bta-miR-2371:46-65]

--uaa    uu   uu        augg        ac 
     ccaa  aau  cauagaau    augguauu  a
     ||||  |||  ||||||||    ||||||||   
     ggUU  UUG  GUGUUUUG    UAUcguaa  c
auugg    -U   GU        ---A        ac 

>bta-mir-2372 (-35.20)   [bta-miR-2372:45-66]

    u     ---                 gag   ugu 
cuag ccgga   auccagucuuuucauca   cuu   c
|||| |||||   |||||||||||||||||   |||   u
gguc ggucu   UGGGUUAGGAAAGUAGU   Gag   u
    u     cAC                 -AA   uuu 

>bta-mir-2373 (-33.90)   [bta-miR-2373:14-34] [bta-miR-2373*:46-68]

gccc    ucca -     C  -   A         agg 
    ugcg    c CUUCC CG GUC GGGCUCGGC   g
    ||||    | ||||| || ||| |||||||||   c
    acgc    G GAAGG GC CGG CCCGAGCug   g
ugcc    caCC A     U  A   -         agg 

>bta-mir-2374 (-35.90)   [bta-miR-2374:45-65]

   ga    -   -g  -g     g  ag  g   g   g 
cgc  cacg ggc  gc  uuccc gg  cc ggc cuc g
|||  |||| |||  ||  ||||| ||  || ||| |||  
gcg  gugc ccG  CG  GAGGG UC  GG UUg ggg g
   ga    g   GG  GA     G  -G  G   -   c 

>bta-mir-2375 (-27.60)   [bta-miR-2375:45-67]

    a  uc      -u    cgg    ga   a  gu 
ggag ga  ugauca  ccuc   guca  ggg gu  a
|||| ||  ||||||  ||||   ||||  ||| ||   
ccuc cu  aCUAGU  GGAG   UAGU  CCC ca  c
    -  --      CU    AGG    GA   a  ac 

>bta-mir-2376 (-32.20)   [bta-miR-2376:43-65]

--   -      g           a -c    a u 
  ggg gcuugg agggucucaga g  agga c u
  ||| |||||| ||||||||||| |  |||| |  
  cUC CGGAUC UUCUAGAGUCU C  uccu g u
cc   G      G           C uu    c u 

>bta-mir-2377 (-25.10)   [bta-miR-2377:45-64]

        -  acac   -ga a    -a     ga 
gacuuaga cc    ggg   g gcag  gucca  g
|||||||| ||    |||   | ||||  |||||  c
cugagUCU GG    UCC   C CGUC  cgggu  a
        C  ---A   AGA A    Ac     ac 

>bta-mir-2378 (-33.30)   [bta-miR-2378:47-67]

u    a    u uu aug u       --     -uu   a 
 ggga ggag g  c   g cucaggc  uccac   agc g
 |||| |||| |  |   | |||||||  |||||   |||  
 cccu ccuu u  G   C GAGUCUG  GGGUG   ucg a
a    -    c GG -AA -       UU     Ucu   g 

>bta-mir-2379 (-26.60)   [bta-miR-2379:48-69]

    g        -gcaaa     -      ca   cuu 
cuug cuucaaaa      cucca uggccu  gaa   u
|||| ||||||||      ||||| ||||||  |||    
gaac gaagUUUU      GAGGU GUCGGA  cuu   a
    a        AUAGAA     C      aa   cua 

>bta-mir-2284c (-20.40)   [bta-miR-2284c:13-32]

  ua     ac  A    U      U       c  cac 
au  gguug  cA AAAG UCGUUU GGUUUUu ug   a
||  |||||  || |||| |||||| ||||||| ||    
ua  cuaac  gu uuuc agcaaa ccaaaaa au   a
  gc     ca  c    c      c       u  ucu 

>bta-mir-2325b (-15.50)   [bta-miR-2325b:44-63]

       -aac  ug    ua  caa    ga 
gugaaca    ac  aaua  cu   ucau  g
|||||||    ||  ||||  ||   ||||  a
uacUUGU    UG  UUGU  GA   ggug  g
       GUUU  GU    UG  agg    aa 

>bta-mir-2380 (-38.70)   [bta-miR-2380:45-66]

   c                   a      u aga 
cca uuuaaccuuuuaaaguaca ucaccc c   u
||| ||||||||||||||||||| |||||| |    
ggu aaAUUGGAAAAUUUCAUGU AGUGgg g   a
   a                   C      u ggu 

>bta-mir-2381 (-38.30)   [bta-miR-2381:46-66]

u       u  g      g    c -a   c  a 
 ggcagcc ag acagag agcc g  ugg ac c
 ||||||| || |||||| |||| |  ||| || g
 cugUCGG UC UGUCUC UCGG C  acc ug a
a       U  G      G    A ac   c  g 

>bta-mir-2382 (-32.60)   [bta-miR-2382:12-33] [bta-miR-2382*:47-70]

    cacu   A   -   U  - UG     CU   --  u 
gcug    ugu GGG GAG GC C  GGAAG  GUu  cc u
||||    ||| ||| ||| || |  |||||  |||  ||  
cgac    aCA CCC CUC CG G  CCUUC  Cag  gg u
    --cc   C   G   -  U GU     AU   cc  u 

>bta-mir-2383 (-31.20)   [bta-miR-2383:47-66]

        -  cuaa  ug -g     -g   caa      
ggacggug ag    gg  g  gucau  ggc   ggcca 
|||||||| ||    ||  |  |||||  |||   |||| g
ucugccac uC    UC  C  UAGUG  UCg   ucggu 
        a  -CAG  GU AG     AG   -ag      

>bta-mir-2384-1 (-19.22)   [bta-miR-2384:12-34]

-ug   ucguaaAACU   C      GA       --   g 
   ucc          GUA UGGAAG  UGGAUGG  cag a
   |||          ||| ||||||  |||||||  |||  
   agg          cau accuuc  acuugcc  guu a
aca   -------uuu   a      -g       au   c 

>bta-mir-2384-2 (-19.22)   [bta-miR-2384:12-34]

-ug   ucguaaAACU   C      GA       --   g 
   ucc          GUA UGGAAG  UGGAUGG  cag a
   |||          ||| ||||||  |||||||  |||  
   agg          cau accuuc  acuugcc  guu a
aca   -------uuu   a      -g       au   c 

>bta-mir-2325c (-21.40)   [bta-miR-2325c:47-66]

 gg     ug  ug      uagccuu       u 
g  gaaga  ga  gcggcu       gggaggg u
|  |||||  ||  ||||||       |||||||  
C  UUUCU  UU  UGUUGG       uccuuuc u
 UU     UU  UU      ------u       g 

>bta-mir-2385 (-30.00)   [bta-miR-2385-5p:11-31] [bta-miR-2385-3p:46-67]

u    a   c        A UG      G   gcag 
 cuuc gcu CUGGGGCA G  GAGUAC UUg    a
 |||| ||| |||||||| |  |||||| |||    g
 ggag cgA GACUCUGU C  CUCAUG Aac    a
g    a   U        C CG      A   auuu 

>bta-mir-2284v (-15.00)   [bta-miR-2284v:37-56]

   a  uu       gaa    guguu  a 
gga gg  cuccaag   gacu     gc g
||| ||  |||||||   ||||     ||  
ccu cU  GGGGUUU   UUGA     cg u
   -  UU       -GC    AAAAc  g 

>bta-mir-2386 (-15.07)   [bta-miR-2386:11-30]

     uguacUGUU    UUUU     UC      ucuuccca 
gcaag         UGGU    CGUUU  Ccugug        c
|||||         ||||    |||||  ||||||         
cguuc         accg    guaaa  ggacac        c
     --------u    ----     -c      cucuauuc 

>bta-mir-2387 (-42.20)   [bta-miR-2387:14-35]

    u       c  -G      U  C       C  gg 
agcg ggagggc UG  AAGGCC GG UUUGCAG Gu  a
|||| ||||||| ||  |||||| || ||||||| ||  c
ucgc cuucccg ac  uuccgg cc agacguc ca  u
    -       a  gg      c  -       c  gg 

>bta-mir-2388 (-33.40)   [bta-miR-2388*:12-34] [bta-miR-2388:50-70]

   a g      G    C UC     U U    -A   a 
cau a gagucA CUCC G  UCCUC G GCUG  guc c
||| | |||||| |||| |  ||||| | ||||  ||| a
gua u uucAGU GAGG C  AGGAG C CGac  uag a
   g g      A    U GA     - U    gc   g 

>bta-mir-2389 (-46.20)   [bta-miR-2389:17-37]

   ccc      g  cGA      U   GA     -A  -  a 
gcg   gggcgg gc   GGGGAC CGG  GUCGG  Gc gg g
|||   |||||| ||   |||||| |||  |||||  || ||  
cgc   cucgcc cg   ccccug gcc  cggcc  cg cc a
   -cc      g  ---      c   gc     cc  a  a 

>bta-mir-2390 (-19.10)   [bta-miR-2390:11-30]

   g     uG   --UG       G      c  c 
ugu cuuuc  UUG    UGUUUUU UUUUCC ua u
||| |||||  |||    ||||||| |||||| ||  
aua gaaag  gac    acgagaa gagagg au c
   g     ug   uuua       a      u  g 

>bta-mir-2391 (-15.40)   [bta-miR-2391:42-61]

   u   cu  u  ---g  ---g       c  u 
gag ggg  ga gu    uu    ggcugug uc a
||| |||  || ||    ||    ||||||| ||  
cuC CCC  CU CA    AA    cugguac ag a
   -   CC  -  AAAA  AAAA       -  u 

>bta-mir-2392 (-37.90)   [bta-miR-2392:45-66]

      g ug    -          uu       ga 
cucccu g  ucuc cauucccauc  caucugu  g
|||||| |  |||| ||||||||||  |||||||  a
gggggA C  GGGG GUGGGGGUAG  GUAggua  a
      - GU    A          --       ac 

>bta-mir-2393 (-21.20)   [bta-miR-2393:32-51]

        gg  g      --g    g 
ggcagagg  ag agagga   aaga a
||||||||  || ||||||   ||||  
ccgUUUUC  UU UUUUUU   Uucu c
        UU  G      AGA    a 

>bta-mir-2394 (-32.00)   [bta-miR-2394:6-27]

     UUC      -CAA       A  aac  uu 
caggc   UCCCCU    UCUCAGG CU   ca  u
|||||   ||||||    ||||||| ||   ||   
guccg   agggga    agagucc ga   gu  u
     -ua      aagg       -  -gu  ua 

>bta-mir-2395 (-37.00)   [bta-miR-2395:9-29]

  a   a C   UG  AG         A    g c c 
ag gug c UGU  GC  CUCUCUCAG Cccu a g a
|| ||| | |||  ||  ||||||||| |||| | |  
uc cac g aca  cg  gagggaguc ggga u c g
  -   c c   gu  ga         -    g c g 

>bta-mir-2396 (-38.70)   [bta-miR-2396:43-64]

    g         g       ac  -      a 
gaug ucaucgaga cccagug  ug ggagua c
|||| ||||||||| |||||||  || ||||||  
uuac GGUAGUUCU GGGUCAC  AC cuucgu a
    g         G       GU  U      g 

>bta-mir-2285c (-19.60)   [bta-miR-2285c:44-65]

       u   c   g -ag       a   g 
gccgaaa guu guu a   uuuuucc ugg g
||||||| ||| ||| |   ||||||| |||  
CGGUUUU CAA CAA U   AAgaagg acu u
       U   A   G CCA       c   g 

>bta-mir-2397 (-41.50)   [bta-miR-2397*:7-29] [bta-miR-2397:48-69]

u              A      GC     gg  aca 
 uuggaUGCGUUCUU CCACUG  CUGUA  ug   u
 |||||||||||||| ||||||  |||||  ||    
 aaccUACGCAAGAA GGUGAC  GACau  ac   g
a              C      GA     ga  cua 

>bta-mir-2398 (-50.60)   [bta-miR-2398:13-34]

        g    UCU       C UC      Ug    a 
cucggggu agcA   AGGGACG G  GGCAAC  cagg c
|||||||| ||||   ||||||| |  ||||||  ||||  
gggcccca ucgu   ucccugc c  ccguug  gucc c
        g    -uc       c cu      --    c 

>bta-mir-2399 (-40.50)   [bta-miR-2399:13-34] [bta-miR-2399*:48-69]

guaaucc               C           ug u 
       ucacaCUUUCUGUAG UGUUGGAACUA  g g
       ||||||||||||||| |||||||||||  |  
       agUGUGAAAGACAUC ACAAUCUUggu  u c
cacuaaa               A           gu a 

>bta-mir-2400 (-34.40)   [bta-miR-2400:45-67]

     ---cu c      -  a    g   a    g u 
gaggg     g ccgagc gc ugug cug gugu g c
|||||     | |||||| || |||| ||| |||| | c
cuccc     C GGCUCG CG ACAC GAC cgcg u c
     aaAGU A      A  G    -   C    g u 

>bta-mir-2284q (-29.50)   [bta-miR-2284q:1-20]

    A       C       a  uu      u 
GGCC AAAAGUU GUUCGGA uu  ccauca a
|||| ||||||| ||||||| ||  ||||||  
ccgg uuuuuaa caagccu aa  gguggu a
    g       a       -  uc      g 

>bta-mir-2401 (-38.50)   [bta-miR-2401:11-30]

ucu  ug      --     U     G      g   a 
   gg  gacAGA  GCUUG GUCUA GGCUGu ugu u
   ||  ||||||  ||||| ||||| |||||| ||| u
   uc  cugucu  cggac cgggu ucgacg gcg u
-ag  gu      ga     u     g      -   a 

>bta-mir-2402 (-35.50)   [bta-miR-2402:43-63]

u    -aaa       a      ca    gaggg 
 ggag    ggcagag ggcagg  gugc     a
 ||||    ||||||| ||||||  ||||      
 ccuc    CCGUCUC CCGUCC  UAcg     c
g    ACGA       A      -A    aggga 

>bta-mir-2403 (-37.10)   [bta-miR-2403:45-65]

   uu  uuu          -c       -    aggc 
gag  uc   ugaggccggc  gcuuccc agcc    u
|||  ||   ||||||||||  ||||||| ||||     
uuc  gg   gUUCCGGUCG  CGAAGGG UCgg    g
   cc  -uu          AU       C    gaaa 

>bta-mir-2404-1 (-22.70)   [bta-miR-2404:2-21]

         CA GGUAUCU   uu      uu 
aUUGCACUG  U       GCa  cagcag  u
|||||||||  |       |||  ||||||  g
uagcgugac  a       ugu  gucguc  u
         ag --aaacu   cg      cu 

>bta-mir-449d (-25.70)   [bta-miR-449d:16-35]

u  ccu     u    AAG -  -G  U   GU     g 
 gu   gucca gucG   G CU  UG GCU  GGAGg g
 ||   ||||| ||||   | ||  || |||  |||||  
 cg   cgggu cagc   c ga  gc cgg  cuucc a
a  --u     c    aca a  ga  -   gu     g 

>bta-mir-2405 (-17.20)   [bta-miR-2405:44-63]

     agaacag      ug   ---uguu      ua 
gggcc       gagguu  gcg       uguuuu  g
|||||       ||||||  |||       ||||||   
uccgg       CUCCGG  UGU       GUagag  u
     -----aa      UU   UUGGUGU      uu 

>bta-mir-2406 (-25.00)   [bta-miR-2406:7-28]

  u    A       AGGAA    G   --u u    ac 
gg agaA GGGAAGA     GCUG AUU   g gacc  u
|| |||| |||||||     |||| |||   | ||||   
cc ucuu cccuucu     cgac uag   c uugg  u
  u    c       -----    a   ugu u    gu 

>bta-mir-2407 (-28.10)   [bta-miR-2407:42-63]

u   --u  -  --    c    --   a   -u   uaa 
 ggc   ca cc  cccu uccc  ccg ccc  cgu   c
 |||   || ||  |||| ||||  ||| |||  |||   c
 ccg   gu GG  GGGA AGGG  GGC GGG  gca   c
g   uuc  a  UC    -    UA   -   UC   ccu 

>bta-mir-2408 (-36.90)   [bta-miR-2408:40-60]

     g     ag            cuca 
gcugg ugggc  gcacacgugugu    g
||||| |||||  ||||||||||||    c
cGGCC ACUCG  UGUGUGCACacg    g
     G     AG            uacc 

>bta-mir-2409 (-45.80)   [bta-miR-2409:45-64]

             c        --    c ac 
agggcagcgucca gugagacc  uggu c  g
||||||||||||| ||||||||  |||| |   
UCCCGUCGCAGGU CACUCUgg  gcca g  a
             A        ug    a ac 

>bta-mir-2410 (-24.40)   [bta-miR-2410:11-32]

g    g   g   AG   --A     AC U U  g  u 
 ggcg ggu CUG  CUG   GGAGG  C G GA ag c
 |||| ||| |||  |||   |||||  | | || || g
 ucgu ucg gac  ggu   ccuuc  g c cu uc a
u    g   -   cu   guc     gu u c  g  g 

>bta-mir-1584 (-38.80)   [bta-miR-1584:11-30] [bta-miR-1584*:45-66]

  c     c       -   G CU         g a 
gg ugagc gUUGGGG CUG G  GGGGGCAgg a u
|| ||||| ||||||| ||| |  ||||||||| |  
uc acucG CGACUCC GAC C  CUCUCgucu u c
  a     C       A   G CU         g u 

>bta-mir-1940 (-22.84)   [bta-miR-1940:1-25]

-CU      CUAAGAA   U      gau 
   GGAGGA       GGC GAGUCU   g
   ||||||       ||| ||||||   a
   ccuccu       ucg cucaga   a
gau      aacauag   u      acg 

>bta-mir-2411 (-29.20)   [bta-miR-2411:10-33] [bta-miR-2411*:51-75]

     aa  U       CU U   AUG       - agaa 
gagga  ug GGAGUGA  G CAG   CAGCCAg c    u
|||||  || |||||||  | |||   ||||||| |     
cuCCU  AC CCUCAUU  C GUC   GUCGguu g    a
     AC  -       -- U   -AA       u guga 

>bta-mir-2412 (-26.30)   [bta-miR-2412:14-35]

    g   cauu   GG      -    ---G  --      a 
uaau agu    cUU  GGCUGG GUGG    GA  GAGGGc a
|||| |||    |||  |||||| ||||    ||  ||||||  
guug uca    gag  ccgacc cacc    uu  cuuucg c
    a   ---c   -a      g    aaaa  aa      u 

>bta-mir-2413 (-36.50)   [bta-miR-2413:46-67]

    c cccu   c  uc      -a     c   u   a 
uccu c    cuc cc  cagucc  cuggg ucc ggc g
|||| |    ||| ||  ||||||  ||||| ||| ||| g
agga g    gag GG  GUCAGG  GACCC AGG Ucg a
    c -acu   U  -C      GG     -   C   a 

>bta-mir-2284m (-25.40)   [bta-miR-2284m:9-28]

      ca        UG  ---C    -UUU  a 
guuggc  GAAAAGUU  UU    GGGU    cc g
||||||  ||||||||  ||    ||||    ||  
caaccg  cuuuucaa  aa    ccca    gg a
      -a        gu  acua    uugu  g 

>bta-mir-2414 (-31.50)   [bta-miR-2414:7-28]

            AG   GG         uaug    g 
guauuuUGUGUU  UGC  AUGGUGUUA    uuaa a
||||||||||||  |||  |||||||||    ||||  
cguaaaacacga  acg  uaccacaau    aauu c
            -g   aa         -uga    a 

>bta-mir-2415 (-48.80)   [bta-miR-2415*:1-21] [bta-miR-2415:45-65]

   A        U  C    A    u  u  a 
GGG GUCGGUCC GC GGCC ggcc gc gg c
||| |||||||| || |||| |||| || || a
ccC CAGCCAGG CG CCGG CCgg cg cc c
   G        U  U    A    c  u  u 

>bta-mir-2416 (-32.00)   [bta-miR-2416:45-67]

u  g  g --cu       cauc      -aa  -   ac  a 
 ug ag a    gggcauc    ccacag   gc cug  gc g
 || || |    |||||||    ||||||   || |||  ||  
 ac uc u    cccGUAG    GGUGUC   CG GAC  cg c
g  g  g acau       --AA      ACC  U   GU  u 

>bta-mir-2417 (-44.40)   [bta-miR-2417:9-29]

         G                        ug 
acaagucuA AUGGAGGCACUGAAAAUUUaauuu  g
||||||||| ||||||||||||||||||||||||  c
uguucagau uaccuccgugauuuuuaaauuaaa  g
         a                        cu 

>bta-mir-2418 (-34.50)   [bta-miR-2418:9-30]

  c     U     --     U            accu  u 
gg acaga GGGAU  GAGUG GGCGUGGUCGag    gg c
|| ||||| |||||  ||||| ||||||||||||    ||  
uc ugucu cccug  cucgu cugugccaguuc    cc u
  -     u     cc     -            ----  g 

>bta-mir-2284b (-29.60)   [bta-miR-2284b:8-28]

u    ug         -UUU         - --  a 
 uggc  AAAAGUUCG    GGUUUUUUC c  ac a
 ||||  |||||||||    ||||||||| |  || g
 accg  uuuucaagu    ccaagaaag g  ug a
a    gu         uagu         a au  u 

>bta-mir-1814c (-25.80)   [bta-miR-1814c:11-30]

     cuugcGUUUU   UG      --UUU       g  u 
aggcu          GUU  GGUUUG     Ucaacag cu g
|||||          |||  ||||||     ||||||| || u
uccga          caa  ccaaac     aguuguu ga a
     ----------   gu      cgugu       g  a 

>bta-mir-2419 (-50.30)   [bta-miR-2419:9-30] [bta-miR-2419*:49-70]

            C    A                 au 
ccucuaugAUCG AUCA CACUCGUCUGUUcuuaa  a
|||||||||||| |||| |||||||||||||||||   
ggagauACUAGC UAGU GUGGGCGGACaagaguu  a
            A    C                 ac 

>bta-mir-2420 (-22.40)   [bta-miR-2420:44-63]

     --uuuu   cucua                 aac 
augua      uua     agugagcacacagcuuc   c
|||||      |||     |||||||||||||||||    
uacgu      aau     UUAUUUGUGUGUUGGAg   a
     cucugu   cUUUC                 gac 

>bta-mir-2421 (-15.94)   [bta-miR-2421:16-35]

---g  u    uguuuaaUAUUUU   G          -----g  au 
    gu uggg             UUU UUUCGUGUUU      cc  g
    || ||||             ||| ||||||||||      ||   
    ca accc             gga gagguacaaa      gg  a
ccaa  u    ------------u   g          acaaaa  aa 

>bta-mir-2422 (-33.60)   [bta-miR-2422:4-25]

uc           -  A  -U      acg  cag 
  cUUGAGGGGAC UG GG  GCGGAG   ca   a
  ||||||||||| || ||  ||||||   ||    
  ggacuccucug ac cc  cgccuc   gu   u
-a           c  -  uu      cua  uac 

>bta-mir-1843 (-35.20)   [bta-miR-1843:3-26]

  A      G  GU  -   U       --g  ca 
gu AGCUUC UG  CU CUG CUUGCCc   ga  g
|| |||||| ||  || ||| |||||||   ||   
cg ucgaag ac  ga gac gaacggg   cu  c
  a      g  ug  c   u       agg  uc 

>bta-mir-320b (-25.80)   [bta-miR-320b:43-62]

     --auc    g     -  - ag     ccu  g 
agagc     accg cccuc ca c  agcuu   gg c
|||||     |||| ||||| || |  |||||   ||  
ucuug     UGGU GGGAG GU G  UCGAg   uc c
     gcucc    -     A  U GG     -au  c 

>bta-mir-2423 (-21.40)   [bta-miR-2423:43-63]

      -  ---      --         --uaag   u 
aagagc cu   ggaagc  caaucacac      aag g
|||||| ||   ||||||  |||||||||      ||| g
uuuucg ga   CUUUUG  GUUGGUGUG      uuc u
      u  gUC      UU         UUuuga   g 

>bta-mir-2424-1 (-21.13)   [bta-miR-2424:46-68]

u    aggacu     ugugcugug    cu    ga  a 
 ccag      uagcc         gcca  gaga  ug a
 ||||      |||||         ||||  ||||  || a
 gguc      gUCGG         UGGU  UUCU  Ac c
g    guaaac     -UAGUCUAA    --    AG  a 

>bta-mir-2425 (-38.00)   [bta-miR-2425:14-35] [bta-miR-2425*:51-70]

    auu      CC      C  A  C      Ua  cu 
aggc   gaggga  AGGGCA GG UC AUGAAC  gg  a
||||   ||||||  |||||| || || ||||||  ||  c
uccg   cucccU  UCCCGU CC AG UGCUUg  cc  u
    -ac      CC      C  -  A      ca  au 

>bta-mir-2426 (-31.80)   [bta-miR-2426:14-34]

    ggaauguac          C    GGAA  a     u 
ggga         AAGGAAGUGG UUGG    AG ggggu u
||||         |||||||||| ||||    || |||||  
cccu         uuccuucacc ggcc    uc cccua g
    ---------          u    acag  -     g 

>bta-mir-2427 (-22.80)   [bta-miR-2427:11-31]

caauauuaucA      UUCAAA       Ga    ac 
           GGUCAU      GAGGGCU  uggg  c
           ||||||      |||||||  ||||   
           ccagug      uucucgg  accu  a
---guuagaaa      ucacua       gg    aa 

>bta-mir-2428 (-33.70)   [bta-miR-2428:9-29]

  c  acaU        -     C  A    ag 
gc ca    GGCUGGAG UGCGG GG GGUg  c
|| ||    |||||||| ||||| || ||||  c
cg gu    ccgaccuc acguc cc ccgc  g
  a  -ccu        g     -  -    ca 

>bta-mir-2429 (-20.60)   [bta-miR-2429:46-65]

ugaca       -uc          c   ggcug   aa 
     gaagagu   aaaagggaag agu     aga  a
     |||||||   |||||||||| |||     |||   
     uuuuucg   UUUUCCCUUU UCA     ucu  u
--acg       UUU          -   -AAAA   ga 

>bta-mir-2430 (-28.20)   [bta-miR-2430:8-30]

     acU UG  UC  C     UUU -    ---   c 
cugag   C  GG  GG AGGGG   C CGGu   gug u
|||||   |  ||  || |||||   | ||||   |||  
gacuu   g  cc  cc ucccc   g gcca   uac u
     ccc gu  uc  -     --u u    acu   g 

>bta-mir-2431 (-25.40)   [bta-miR-2431*:3-24] [bta-miR-2431:45-67]

u     -    A      -U  A   --g     a 
 uCAGG UCAU UAAGUG  GG GUU   gcuag c
 ||||| |||| ||||||  || |||   |||||  
 AGUCC AGUA GUUCAC  CC Cag   ugguc u
g     C    C      CC  A   uaa     a 

>bta-mir-677 (-17.80)   [bta-miR-677:1-23]

    CU    A   ----     ---U     ucgu 
CUCA  GAUG GCA    GCUUC    GACuu    u
||||  |||| |||    |||||    |||||     
gagu  uuac cgu    cgaag    uugag    c
    cu    -   agac     ucgu     ucuu 

>bta-mir-2432 (-44.00)   [bta-miR-2432:46-67]

                    cccc           a 
uaugaccucuaagucuagaa    ucugauucagg u
||||||||||||||||||||    |||||||||||  
auacUGGAGAUUCGGAUCUU    GGACUgagucu u
                    ---A           c 

>bta-mir-2433 (-41.70)   [bta-miR-2433:11-33]

    g    g     GC   G    C    AUG    ag 
ccag aggg UGGGG  GCU CAGA ACGG   guuc  a
|||| |||| |||||  ||| |||| ||||   ||||   
gguc uccc acucc  cgg gucu ugcc   caag  a
    a    g     ua   -    u    --a    ag 

>bta-mir-2434 (-20.60)   [bta-miR-2434:12-31]

    acu     ---    GG GU          - uaa 
cagu   guggU   UGUU  G  UUUUUUGUAU c   a
||||   |||||   ||||  |  |||||||||| |   a
guca   cacca   acaa  c  aaaaaacaua g   c
    ---     uac    ga ug          u uac 

>bta-mir-2435 (-19.40)   [bta-miR-2435:4-25]

    AACU GA    A       --     cu  gu 
ggaA    C  AUGA CUCUUUG  GCuga  ca  a
||||    |  |||| |||||||  |||||  ||   
ccuu    g  uacu gagagac  cgauu  gu  u
    guac ac    -       ua     -u  au 

>bta-mir-2436 (-38.50)   [bta-miR-2436-5p:10-31] [bta-miR-2436-3p:48-69]

  c     - C    CA  U      A   C   uccc 
ag agggu g GGCG  GC GUCGGG GGG Gcg    c
|| ||||| | ||||  || |||||| ||| |||     
uc ucccA C CCGC  CG CAGCCC CCC ugc    g
  -     A -    UC  C      G   c   cccu 

>bta-mir-2284r (-32.70)   [bta-miR-2284r:5-27]

u       C            UC    uuua 
 gggUUGG CCAAAAGUUCGU  GGAU    c
 ||||||| ||||||||||||  ||||     
 cccaacc gguuuucaagca  ucua    a
a       c            -u    ccgu 

>bta-mir-2424-2 (-21.13)   [bta-miR-2424:46-68]

u    aggacu     ugugcugug    cu    ga  a 
 ccag      uagcc         gcca  gaga  ug a
 ||||      |||||         ||||  ||||  || a
 gguc      gUCGG         UGGU  UUCU  Ac c
g    guaaac     -UAGUCUAA    --    AG  a 

>bta-mir-2437 (-17.40)   [bta-miR-2437:40-60]

        --------     ---    ug    a 
cagaggga        gccau   ugga  gaua g
||||||||        |||||   ||||  ||||  
gUUUCCUU        UGGUG   acuu  uugu g
        UUGUUUUU     Uug    gu    u 

>bta-mir-2438 (-29.80)   [bta-miR-2438:2-24]

 UG     U    U   G  -U    --    gu 
g  GGGUG GUGC GGA CC  GCUu  gcuu  g
|  ||||| |||| ||| ||  ||||  ||||  u
c  cccac caug ccu gg  cgga  cggg  c
 gu     c    u   -  uc    gu    uc 

>bta-mir-2439 (-31.20)   [bta-miR-2439*:12-33] [bta-miR-2439:48-69]

   uug      -  G     G  GA    C  Au   u 
guc   ccgucU CU GCCUG CU  UGAU UC  acc u
|||   |||||| || ||||| ||  |||| ||  ||| g
cag   ggcAGA GG UGGAC GA  ACUA ag  ugg a
   cca      C  A     A  AG    U  --   u 

>bta-mir-2440 (-25.20)   [bta-miR-2440:45-64]

u     u  ----ggu    a  gu   g    g  -  g 
 ccagc gu       gggg cu  uug ugcg gg ug g
 ||||| ||       |||| ||  ||| |||| || ||  
 ggucg cg       UCCC GA  AGU ACGU uc ac g
g     -  aguaAGG    A  GU   G    g  g  c 

>bta-mir-2441 (-41.80)   [bta-miR-2441:46-65]

      g   u   c  c    ca   uc   uu 
ccuccc ccc cug cc gucc  ucc  ugg  a
|||||| ||| ||| || ||||  |||  |||   
ggaggG GGG GAC GG CAGG  Agg  acc  c
      A   U   A  A    AC   ga   cu 

>bta-mir-2442 (-27.80)   [bta-miR-2442:11-32]

gcgccaccacA       G    U  -    CA c   au 
           GAGCAGG GCUG GG GCUG  g acc  g
           ||||||| |||| || ||||  | |||  a
           uucgucu ugac cc cgac  c ugg  a
----cguucug       g    -  a    -c u   ag 

>bta-mir-2443 (-37.10)   [bta-miR-2443:9-32]

       uU     C   A   UA    --GU   ca 
gugaggg  GAGGG AGG CCG  UGAG    GUc  a
|||||||  ||||| ||| |||  ||||    |||  g
cacuccc  cuccc ucc ggc  acuc    cgg  g
       --     u   c   cg    accu   aa 

>bta-mir-2284h (-30.00)   [bta-miR-2284h:6-26] [bta-miR-2284h*:45-64]

     CC            C      -c    a 
guugg  CAAAAGUUCGUU GGGUUU  cugu u
|||||  |||||||||||| ||||||  |||| g
caaCC  GUUUUCGAGUAA CCCAaa  ggca u
     -A            C      aa    g 

>bta-mir-2444 (-17.23)   [bta-miR-2444:42-61]

gua      ga  ug  -uugucaua          u 
   gaugcu  au  aa         aauacaaggg a
   ||||||  ||  ||         ||||||||||  
   uuaugg  ua  UU         UUGUGUUUuc u
uac      ag  gU  UGUUUUUUG          g 

>bta-mir-2445 (-21.10)   [bta-miR-2445:8-27]

     u  -       UCUUUUUU  UUc    c  ccu 
cuggc cG GCUUUUC        CU   ucgg gu   g
||||| || |||||||        ||   |||| ||    
gaccg gc cgaaagg        gg   agcc ca   c
     -  g       ------uc  cca    u  cuu 

>bta-mir-2446 (-23.90)   [bta-miR-2446:6-28]

    cU                C  GC     gaa 
gcua  AAAAUAUAUUUGAAAU GG  Cuuuu   a
||||  |||||||||||||||| ||  |||||    
cgau  uuuuauaugaacuuua cc  gaaaa   g
    ac                a  -a     gua 

>bta-mir-2447 (-29.80)   [bta-miR-2447:13-34]

    ccc    uU U     CC  UUU     CU   u a 
cggc   gggu  C GGGAA  GG   GGCUG  gug c u
||||   ||||  | |||||  ||   |||||  ||| | u
gccg   cccg  g cccuu  cc   ccgac  cau g u
    ---    uc u     uu  ucc     --   - u 

>bta-mir-2448 (-33.70)   [bta-miR-2448*:6-27] [bta-miR-2448:49-70]

      UG     A   C   A     -   -      
ugcacC  CGGAU CAA CAA CACGG uug gagaa 
||||||  ||||| ||| ||| ||||| ||| |||| u
augUGG  GCCUA GUU GUU GUGuc aac cuuua 
      GU     G   A   G     u   a      

>bta-mir-2449 (-46.30)   [bta-miR-2449:45-64]

  -              --g  gaa      u c   c 
gc ccggggccuugcug   cu   gcccac g aga u
|| ||||||||||||||   ||   |||||| | |||  
cg gguccCGGGACGAC   GG   CGGGUg c ucu u
  c              AGA  --A      c -   u 

>bta-mir-2450c (-31.90)   [bta-miR-2450c:46-67]

               a   -   c   --cu  -   u 
agaggcgcaugugcc uuu cug aca    cg gua a
||||||||||||||| ||| ||| |||    || |||  
uuuccGUGUGCGCGG AGA GAC UGU    gc cgu g
               -   U   -   ACac  g   a 

>bta-mir-2450b (-32.70)   [bta-miR-2450b:46-68]

           ug     u   ca  cu  -  aua 
agaggcgcgug  ccuuu cug  ca  ug gu   g
|||||||||||  ||||| |||  ||  || ||    
uuuccGUGUAC  GGAGA GAC  GU  ac cg   a
           GU     U   UG  AC  a  cuc 

>bta-mir-2450a (-36.00)   [bta-miR-2450a:48-68]

           ug     u    a  cu  -  aua 
agaggcgcgug  ccuuu cugc ca  ug gu   g
|||||||||||  ||||| |||| ||  || ||    
uuuccGUGUAC  GGAGA GACG GU  ac cg   a
           GU     U    G  ac  a  cuc 

>bta-mir-2451 (-33.70)   [bta-miR-2451:44-65]

agag         c  a     c   a   gug 
    cacucucca ag accuu ucc ggc   c
    ||||||||| || ||||| ||| |||    
    GUGAGAGGU UC UGGAG Agg ccg   u
ucAG         C  G     U   -   guc 

>bta-mir-1777a (-35.00)   [bta-miR-1777a:16-35]

  -a      --   ga  GG    GG G      G   c 
gc  uggggu  ucc  gU  GGGC  U GGGGGC GGu u
||  ||||||  |||  ||  ||||  | |||||| |||  
ug  gccucg  ggg  cg  cccg  g ucuccg ccg g
  gg      cu   ac  -a    -- g      g   a 

>bta-mir-2452 (-19.30)   [bta-miR-2452:12-33]

     -    ggG   UGUU   -UU    UU   ---   u 
ccagu ugcu   UGC    UGU   UCCU  UUU   aac c
||||| ||||   |||    |||   ||||  |||   ||| a
gguca acgg   acg    aca   ggga  gag   uug a
     g    --a   --uc   uuu    uc   acu   g 

>bta-mir-2453 (-36.70)   [bta-miR-2453:13-35]

  a   u   u         -  A  AAG     A  aac 
gc ucu gca cUCCUCAGG GC GG   UGCGC Ga   u
|| ||| ||| ||||||||| || ||   ||||| ||   g
cg ggg cgu ggggagucc cg cc   acgcg cu   u
  -   c   c         g  -  -ag     c  caa 

>bta-mir-2454 (-36.00)   [bta-miR-2454:9-31] [bta-miR-2454*:45-64]

     u aCU      U     GC        --u g 
cccug g   GGGGGC GCCAG  AGGAGGCg   g c
||||| |   |||||| |||||  ||||||||   |  
gggac c   CUCUCG CGGUC  UCCUCUgu   c u
     c cUC      C     --        ggu c 

>bta-mir-2455 (-44.70)   [bta-miR-2455:47-68]

    u a             --   u     g   ccc 
ccgg g cucccugcuuccu  agu cagag cug   c
|||| | |||||||||||||  ||| ||||| |||    
ggcu c gAGGGACGGAGGG  UCG GUCUc gac   u
    c c             GC   U     g   cac 

>bta-mir-339b (-25.20)   [bta-miR-339b:1-20]

    UG    C      -     gg   g 
UCCC  UCCU CAGGAG CUCca  ucu g
||||  |||| |||||| |||||  ||| g
aggg  agga gucuuu ggggu  ggg g
    --    c      a     gu   u 

>bta-mir-1434 (-17.50)   [bta-miR-1434*:7-28] [bta-miR-1434:51-71]

       UACAUGAU    -AAA         cuuu a  u 
caccuuG        GACU    AUUUCUuca    g cc g
|||||||        ||||    |||||||||    | ||  
guGGAGU        CUGG    UAAAGAAGu    c gg a
       --------    AAUC         -uau -  u 

>bta-mir-2456 (-28.50)   [bta-miR-2456:45-65]

  g   a  ac    -g     --     a    ugag 
ac ugg gc  cgcu  ccagg  ggugc uucu    g
|| ||| ||  ||||  |||||  ||||| ||||     
ug acc cG  GUGA  GGUCC  UCACG Aagg    u
  g   -  --    AG     UG     C    uugg 

>bta-mir-2457 (-35.29)   [bta-miR-2457:46-67]

  a         g    -uc   g    cgcucuc 
gc cagcgcggc cugu   ugg aacg       a
|| ||||||||| ||||   ||| ||||        
cg gUCGCGCCG GACG   ACC UUgc       u
  a         A    UCA   G    aacccac 

>bta-mir-2458 (-29.20)   [bta-miR-2458:46-67]

           uc            uaa  au 
auacuagcuua  cuuuccaauuag   gu  u
|||||||||||  ||||||||||||   ||  a
UGUGGUCGAAU  GAAAGGUUAauu   cg  a
           GA            uua  ac 

>bta-mir-2459 (-26.30)   [bta-miR-2459:46-66]

      a -c        cc   u   - ---u   u 
ucccag c  cucccguc  cug guc c    gag u
|||||| |  ||||||||  ||| ||| |    |||  
agggUU G  GAGGGUAG  GAC CGg g    uuc c
      A UC        UA   -   c cccc   g 

>bta-mir-2460 (-33.70)   [bta-miR-2460:6-27]

       --     C   AG      CA  ug u 
gggcuUG  GAGCU UUG  GCCUGG  Ug  g u
|||||||  ||||| |||  ||||||  ||  | a
cccgaac  cucga gac  cggacc  au  u c
       gu     c   ca      -c  gu c 

>bta-mir-1777b (-34.80)   [bta-miR-1777b:46-65]

   gc         -----    augg     g  ---    au 
cug  ucucucugu     ugcc    caccg cc   ggag  g
|||  |||||||||     ||||    ||||| ||   ||||   
gac  ggagggacg     GCGG    GUGGC GG   ucuc  a
   -a         uuGGG    -GGG     G  GGg    gg 

>bta-mir-2461 (-33.70)   [bta-miR-2461-5p:16-38] [bta-miR-2461-3p:51-72]

gagucu  c   ug C   U   -      AUC        ua 
      gc aag  g CAC CUG UCUCGG   CUGGCAag  a
      || |||  | ||| ||| ||||||   ||||||||   
      cg uuc  C GUG GAC AGAGUC   GACUguuc  g
--cuuu  -   gU C   U   G      --A        cu 

>bta-mir-2462 (-31.10)   [bta-miR-2462:44-64]

       -    c       aa        guuu 
gucaccu cggu cagucag  cuuucuuu    c
||||||| |||| |||||||  ||||||||     
cagugGA GUUA GUCGGUU  GAAAgaga    u
       U    A       AG        aguu 

>bta-mir-2463 (-29.00)   [bta-miR-2463:6-27]

guaggCU      G     --AAUG        u  uu 
       GCAUGU GUGGA      UCUGcuuc ca  c
       |||||| |||||      |||||||| ||   
       cguaca caccu      ggacgaag gu  c
----cau      a     acauaa        -  uu 

>bta-mir-2464 (-25.20)   [bta-miR-2464-5p:8-31] [bta-miR-2464-3p:44-64]

   a  g C       G   AC     A   -  g 
aag au A UUCUGCU CAG  CUGGA GAC au g
||| || | ||||||| |||  ||||| ||| || a
uuc ua U AAGACGA GUC  GACCU Cug ua g
   a  G C       -   GA     -   a  a 

>bta-mir-2465 (-38.00)   [bta-miR-2465:13-35]

        --g   UG     C         UU    ggu 
ccugaguu   uuu  AGCCA AGUAGAGCC  GGAU   g
||||||||   |||  ||||| |||||||||  ||||    
ggauucag   gaa  ucggu uuaucucgg  uuug   a
        gaa   gu     a         uc    aaa 

>bta-mir-2466 (-34.30)   [bta-miR-2466-5p:1-23] [bta-miR-2466-3p:37-58]

       ---   U     A    G    a 
CUGAGUC   CGG GGGGC GUGU Uacc g
|||||||   ||| ||||| |||| ||||  
GACUCAG   GCC CCCCG CGca gugg u
       UCU   U     A    -    a 

>bta-mir-2467 (-39.70)   [bta-miR-2467*:10-31] [bta-miR-2467:46-68]

     ---     -   CA     G      AC    uuu 
cuugu   guccA CCC  AGCCU GCUGCU  CUug   c
|||||   ||||| |||  ||||| ||||||  ||||   u
ggacg   cagGU GGG  UCGGA UGACGG  Ggac   g
     ggu     C   AC     G      GA    uga 

>bta-mir-2468 (-45.02)   [bta-miR-2468:8-29]

                          U   ucauc 
gauuggcAUAGGAACAUGGAAGAUUG CAg     a
|||||||||||||||||||||||||| |||     u
cugaccguguccuuguaccuuuuaac guc     c
                          c   uuuau 

>bta-mir-2469 (-26.10)   [bta-miR-2469:3-23]

    A --U       --CU    -CU     ccg 
ggUU C   GUAGGGC    GCGG   Uccgc   u
|||| |   |||||||    ||||   |||||    
ccga g   cauuccg    cgcc   aggcg   g
    a uac       ccac    acc     cuc 

>bta-mir-2470 (-20.40)   [bta-miR-2470:44-64]

       aug   -c  u         -  g   u  c 
gcaguau   acu  ac uucaaaacu ca gag ca a
|||||||   |||  || ||||||||| || ||| ||  
uguuaug   ugG  UG AGGUUUUGG GU UUc gu u
       --a   UC  U         U  G   u  u 

>bta-mir-2471 (-26.50)   [bta-miR-2471:6-28] [bta-miR-2471*:47-67]

   u G   AU      AA  -       ----  auu 
gca g AGG  CUGUCU  UC UCAGAGG    gc   u
||| | |||  ||||||  || |||||||    ||    
cgu C UCC  GACAGA  AG AGUCUcc    cg   u
   U G   -C      --  U       uuua  agu 

>bta-mir-2472 (-35.90)   [bta-miR-2472:46-67]

  u   -         ug     gu    u  -     
gg ggc ccugaauuc  agccu  ugag cg gugc 
|| ||| |||||||||  |||||  |||| || ||| c
cc cCG GGACUUAGG  UUGGG  ACUc gu uacc 
  u   U         GU     --    u  a     

>bta-mir-2473 (-25.60)   [bta-miR-2473:46-66]

    u uc    u   cc     c        gugu 
ggag g  gggg ggc  uugcc aauuuggu    a
|||| |  |||| |||  ||||| ||||||||     
ucuu c  CUCC UCG  GACGG UUAAAccg    u
    u UU    U   -A     -        aguc 

>bta-mir-2474 (-38.60)   [bta-miR-2474:37-58]

gucag     -     c        gag   u 
     uuccu ccagc uggcccgg   ggg c
     ||||| ||||| ||||||||   |||  
     GAGGA GGUCG ACCGGGCC   Ucc c
---cA     A     -        --A   g 

>bta-mir-2404-2 (-24.00)   [bta-miR-2404:3-22]

          CA GGUAUCU   uu      uu 
ugUUGCACUG  U       GCa  cagcag  u
||||||||||  |       |||  ||||||  g
auagcgugac  a       ugu  gucguc  u
          ag --aaacu   cg      cu 

>bta-mir-2475 (-18.70)   [bta-miR-2475:45-67]

u  u  u  u   g  ug -       cagag   uu 
 gu uc cu cag uu  c cacuuca     agu  g
 || || || ||| ||  | |||||||     |||  u
 cg GG GA GUC AA  G GUGAAGU     ucg  g
a  u  C  C   A  GU U       -----   uu 

>bta-mir-2476 (-15.80)   [bta-miR-2476:16-35]

    --cu   -------u      CCUG    CUAGU      a 
gacu    auc        guugcC    UGGU     GGUUAG a
||||    |||        ||||||    ||||     |||||| u
cuga    uag        caacgg    acca     uuaguc u
    cucu   uuuauuac      ----    -acuu      c 

>bta-mir-2284o (-25.10)   [bta-miR-2284o:5-24]

u  ---            GG     U       
 gg   gAAAGUUCGUUC  GGUUU Ccauag 
 ||   ||||||||||||  ||||| ||||| c
 cc   uuuucaagcaag  cuaag gguaua 
a  ggu            -a     u       

>bta-mir-2477 (-28.80)   [bta-miR-2477:42-64]

   agua           gag  a   gg   ug   
agg    gccgucagauu   ca cgu  ugc  cu 
|||    |||||||||||   || |||  |||  | c
ucc    cgGCAGUCUGA   GU GUA  GUG  gg 
   -gac           AUA  A   AG   gu   

>bta-mir-2478 (-20.40)   [bta-miR-2478:46-65]

----------gu   gg     u    ---a     -   aga  a 
            ugg  gucgg ggug    gcaag cag   cu c
            |||  ||||| ||||    ||||| |||   ||  
            ACC  CAGUC UCAC    UGuuc guu   ga a
caacuguuaugu   -A     U    CCUA     c   --g  u 

>bta-mir-2479 (-17.50)   [bta-miR-2479:13-32]

     ---        G    UA   UUUC     ua 
cagaa   gggaaagA UUUG  UUG    UUUUG  u
|||||   |||||||| ||||  |||    |||||   
gucuu   ucuuuucu aaac  aac    agaau  u
     uug        g    ca   ucac     uu 

>bta-mir-2480 (-16.70)   [bta-miR-2480:9-28]

u   -     U     U     UUAU  C   aa 
 ugg guaaA UGUAU GUUUC    GA aac  u
 ||| ||||| ||||| |||||    || |||  a
 auc cguuu acaua caaag    cu uug  g
a   a     u     -     -ugu  a   ac 

>bta-mir-2481 (-22.60)   [bta-miR-2481:2-21]

u     -UGUCU  UG   -    uu   ccu 
 UACGU      GC  GGU UUUg  ggc   c
 |||||      ||  ||| ||||  |||    
 augcg      cg  ccg agac  ccg   g
g     uggccu  gu   g    uc   acu 

>bta-mir-2482 (-19.90)   [bta-miR-2482:43-62]

    gg   g    --   g           aa    g 
aggu  ugu uggg  gag gauaaggaaga  auca g
||||  ||| ||||  ||| |||||||||||  |||| a
uucg  gua aucu  UUU CUGUUUCUUUU  UGgu a
    aa   a    aU   G           GA    a 

>bta-mir-2483 (-36.20)   [bta-miR-2483*:14-35] [bta-miR-2483:48-69]

             CG       U    C      -Ag u 
gagugaaaaguuc  UCAACCA CCAG UGUUUG   g g
|||||||||||||  ||||||| |||| ||||||   | a
uucauuuuuuaAG  AGUUGGU GGUC ACAAAc   c u
             AG       U    U      aaa g 

>bta-mir-2484 (-20.00)   [bta-miR-2484:42-65]

    c   -a      ug             -a   aa 
uuau uga  aaugua  caggguuauuaua  uua  a
|||| |||  ||||||  |||||||||||||  |||   
agua acu  uUACGU  GUUUCAGUAGUAU  AGu  a
    c   ag      UA             CG   gg 

>bta-mir-664 (-34.24)   [bta-miR-664:15-36]

   a   uaaaacaC         U   UG         ac 
ggg cau        AGGCUGGGG GUG  UGGAUGgag  u
||| |||        ||||||||| |||  |||||||||  g
ucc gua        uccgauccc cau  gcuuaucuc  u
   -   --uagacc         u   uu         au 

>bta-mir-2485 (-23.70)   [bta-miR-2485:40-60]

--gg          c   au  u    a   u 
    ugccugcagg uuc  ga gggu ucu c
    |||||||||| |||  || |||| |||  
    AUGGACGUCU AAG  CU Uccg gga c
ccUG          -   AU  U    -   a 

>bta-mir-2284e (-20.00)   [bta-miR-2284e:7-26]

     cAA   C      A     C    ug 
gccaa   GUU GUUCGG UUUUU Caua  a
|||||   ||| |||||| ||||| ||||   
cgguu   caa caaguc aaaag guau  g
     uua   a      c     c    ug 

>bta-mir-2486 (-16.82)   [bta-miR-2486:12-34] [bta-miR-2486*:47-69]

   g    ucuGGA         ----   -----AGGG      u 
ccu gaau      GAAGCACGG    UGU         UGGGcc a
||| ||||      |||||||||    |||         ||||||  
gga uuua      uuUUGUGUC    ACG         auuugg a
   g    ------         UAAA   GGGAGUAAA      g 

>bta-mir-2487 (-30.91)   [bta-miR-2487:46-67]

---cc    aua    g    -------     ac  ug c 
     cgcc   cggu cagu       gcucc  uc  g c
     ||||   |||| ||||       |||||  ||  |  
     gcGG   GCCG GUCG       Cgagg  ag  c g
ggccu    CUG    G    GGAAUCU     aa  gu c 

>bta-mir-2488 (-16.20)   [bta-miR-2488:9-28]

u     ---    G     CCUAU     C   uu    g 
 guuuu   acAU UUGAU     UCCCU Ugu  uagu g
 |||||   |||| |||||     ||||| |||  |||| a
 cagaa   ugua aauua     aggga aca  guua g
a     ucu    g     -----     -   -u    a 

>xtr-mir-2184 (-41.60)   [xtr-miR-2184:13-34]

     g    g  A         AU         u   au 
cuugc ucuc gA CAGUAAGAG  UAUGUGCUG guu  c
||||| |||| || |||||||||  ||||||||| |||  a
ggacg agag cu gucauuuuc  guacacggc cga  g
     g    a  c         cg         -   cg 

>xtr-mir-2188 (-47.10)   [xtr-miR-2188:13-34]

--g   g       A     CA   U     G    g gau 
   ggc uguggga AGGUC  GCC CAUAU UCCU u   c
   ||| ||||||| |||||  ||| ||||| |||| |    
   ccg acacccu uccag  ugg guaua aggg g   c
gug   g       g     ac   u     g    g agu 

>hbv-mir-B2RC (-43.50)   [hbv-miR-B2RC:38-58]

      ---        -  u   ---    gu    u 
gcccgc   cgucucuc gu ccc   ggcc  gcgg c
||||||   |||||||| || |||   ||||  |||| g
ugggcg   gcaGAGAG CG GGG   CCGG  CGcc a
      cgg        G  C   UCC    --    g 

>hbv-mir-B4 (-56.60)   [hbv-miR-B4:54-74]

    gg     cgg    u         u  g    g  c 
gccc  cgccc   gcua ccacgcccc uc gccc gc g
||||  |||||   |||| ||||||||| || |||| || g
cggg  GCGGG   UGGU GGUGCGGGG Ag cggg cg a
    --     ---    U         C  g    g  c 

>hbv-mir-B20 (-66.90)   [hbv-miR-B20:17-37]

-cg     g   g         A   UG  G       --   cg 
   ccggc gcg ccgaGAGUG GGG  GC AGCGCGU  gga  c
   ||||| ||| ||||||||| |||  || |||||||  |||   
   ggccg cgc ggcucucgc ccc  ug ucgugca  ccu  a
gua     g   g         g   gu  g       gc   cc 

>bdi-MIR444 (-49.60)   [bdi-miR444:90-110]

cac   uc   -  a            c        g   a   c ug    -   a 
   gcg  cga cu gaggcagcaacu cauaacuu cgg aag u  uugg aug u
   |||  ||| || |||||||||||| |||||||| ||| ||| |  |||| ||| g
   CGU  GUU GA CUCCGUCGUUga guauugaa gcc uuu a  aacc uac a
---   -C   C  A            c        -   a   u gu    g   c 

>bdi-MIR171a (-53.10)   [bdi-miR171a:50-70]

gagguaggaggcggagcggaggaaaggcuucccgaccgggg        UG   GA  ---     CAAU 
                                         gaagcugg  AUU  GC   CGCGC    A
                                         ||||||||  |||  ||   |||||    U
                                         cuucggcc  uaa  ug   gcgcg    C
--------------------cgacgccgccgcuuucgucga        gu   gg  acc     cucu 

>bdi-MIR408 (-34.00)   [bdi-miR408:69-88]

gcucaaggugaaaccaacc    u      cggcuccaguggagccaaacuagcuagcaacagaau 
                   gcuc gcucuc                                    c
                   |||| ||||||                                     
                   cgag cgggag                                    c
ggcggcggcaggaacaguu    -      aaaacuacuagcuaggGGUCCCUUCUCCGUCACGUA 

>bdi-MIR167 (-29.10)   [bdi-miR167:11-31]

-------------------------a   aaa  -   AA   -    G  UG -  U 
                          gag   gc gUG  GCU GCCA CA  A UC A
                          |||   || |||  ||| |||| ||  | || u
                          cuu   cg cac  uga cggu gu  u ag c
cggccggggcuucggugccgcaacga   aaa  a   cg   a    g  gu c  u 

>bdi-MIR1139 (-24.00)   [bdi-miR1139:62-82]

-------------------------------------------------------------------------------u    -    ----     uau 
                                                                                ccuc ugau    uggac   u
                                                                                |||| ||||    |||||    
                                                                                ggag acua    gcuug   a
uauuuacucugaauauacaaugaugaaauuauauacguACAAUGAUCACAUACAAUGAGcggugacacuggucggaguuc    c    ucac     uuu 

>bdi-MIR160 (-49.14)   [bdi-miR160:18-37]

---      cga  ug g   -   - G      UGUAUGCCugcaggaggagcacuaccguc 
   acggac   au  c caU GCC U GCUCCC                             c
   ||||||   ||  | ||| ||| | ||||||                             g
   ugccug   ug  g gua ugg g uggggg                             g
gug      ---  gu -   a   u g      ucucgaugguaggcaggaagaagggaaag 

>bdi-MIR169a (-55.90)   [bdi-miR169a:16-36]

---- c      -g   a  C         UG        Acuccugguguugggggaauug 
    g agagaa  ggg ug AGCCAAGGA  ACUUGCCG                      c
    | ||||||  ||| || |||||||||  ||||||||                      a
    c ucucuu  ucc ac ucgguuccu  uggacggc                      g
ucuu u      ga   -  a         gu        cgauugaguuccgaguuguuuc 

>bdi-MIR397 (-64.90)   [bdi-miR397:18-38]

--------ga     -c    a   a      A           A     ag     ag c        
          agagg  gcaa ggc UCAUUG GUGCAGCGUUG UGaac  gggcc  g gaccggc 
          |||||  |||| ||| |||||| ||||||||||| |||||  |||||  | |||||| g
          ucucu  cguu ccg agugac cacgucgcggc acuug  cuugg  c cuggccg 
cuuagcccgg     ua    c   c      a           c     -g     -- -        

>bdi-MIR156 (-67.40)   [bdi-miR156:101-121]

cggauggcgccaccgggcugaccuggaaggcgcuggccgucgacauugccggggg         -g  gg ---g    g   ---a     a 
                                                       ccgguugug  cu  c    cugu ggc    cuaug u
                                                       |||||||||  ||  |    |||| |||    |||||  
                                                       ggucgACAC  GA  G    GACA Uug    gguac c
----------------------------------guccucagugccggcggcuga         GA  GA AGAA    G   aguc     c 

>bdi-MIR172d (-40.70)   [bdi-miR172d:72-92]

--  g   --       ucaaa       gag    g gu      gg 
  ug agc  caucggg     ccggaau   gccg u  ggcggc  g
  || |||  |||||||     |||||||   |||| |  ||||||  g
  AC UCG  GUAGUCC     gguuuug   cggu g  cugucg  g
cG  G   UA       UAAGA       --a    g ug      ac 

>bdi-MIR1122 (-32.11)   [bdi-miR1122:64-83]

-------------------------------------------------------------------------------------------------------------------------------u    --------      ucc       au 
                                                                                                                                cguc        caugua   auauuuc  u
                                                                                                                                ||||        ||||||   |||||||   
                                                                                                                                gcag        guacau   uauaaag  g
gcaccaagucaagacacguuuaaacacauacaccacuggucuauucuuccccuuuuuuaacaugagguaggcuagagauaaugagcagaguuuaaacAGGUUUAUGCCUACAUAGAUacacauuuuuu    aucuaugu      ---       cc 

>bdi-MIR171d (-46.20)   [bdi-miR171d:81-101]

ugucggcgagcgcgaggaggagggccuccuuga    --  ag    ag   aggaaa        ga 
                                 ggua  gg  gcgg  cgg      ggcuuccc  c
                                 ||||  ||  ||||  |||      ||||||||   
                                 CUAU  CC  CGCC  GUU      ucgaaggg  c
---------------------------cgcucu    AA  -G    GA   -AGUgg        gg 

>bdi-MIR166 (-69.70)   [bdi-miR166:85-105]

uuuu       --    a         c   g           aaga       a   c gg 
    caugguu  gucg ggggaauga gcc ggucugaaaga    agggggc cgc g  a
    |||||||  |||| ||||||||| ||| |||||||||||    ||||||| ||| |  a
    guaccag  cagu CCCCUUACU CGG CCAGGCUuucu    ucccuug gcg c  u
---g       cu    a         U   A           -cga       -   a ag 

>bdi-MIR171c (-46.40)   [bdi-miR171c:64-84]

cgc        ug             a  cu  c     ggac 
   gguauugg  cgguucaaucaga ag  gg gcucc    g
   ||||||||  ||||||||||||| ||  || |||||     
   CUAUAACC  GCCGAGUUAGUuu uc  cc ugggg    c
-ca        GU             c  -u  u     aaaa 

>bdi-MIR399 (-37.00)   [bdi-miR399:73-93]

-------   u c         c     u    gcuaau      -  c  ugc 
       cag g aguucuccu uggca ggau      guagca gg cc   a
       ||| | ||||||||| ||||| ||||      |||||| || ||    
       GUC C UUAAGAGGA ACCGU ccug      uaucgu uc gg   c
cgugacc   C A         A     c    --ucac      a  a  uaa 

>bdi-MIR437 (-24.30)   [bdi-miR437:93-113]

uaaagacaauaugaauacauauauuucauuauggauaaaaugaaacuaauuugg    a      uugguau    g     --aa  u 
                                                      uguc uaaguc       auuu ucuaa    ga u
                                                      |||| ||||||       |||| |||||    ||  
                                                      acag aUUCAG       UGAA AGAUU    cu g
--------------------------------cucccucauguuguaaauacaa    a      -----UU    G     CAAG  g 

>bdi-MIR169b (-31.90)   [bdi-miR169b:19-39]

gagauagaga u    --ug    CAA    GA UU      uau         -cg  u 
          g ggaa    UAGC   GGAU  C  GCCGGg   gugcaugua   cu c
          | ||||    ||||   ||||  |  ||||||   |||||||||   ||  
          c ccuu    gucg   ccua  g  uggucc   uacguauau   gg a
--------gg -    uaua    -ua    -a uc      --c         uaa  g 

>bdi-MIR1127 (-17.66)   [bdi-miR1127:21-41]

uccaccgggacaaguuaguuAACU    --CCUCC      -     aguggcauucuauuacauguau 
                        ACUC       GUCCGA UAuua                      c
                        ||||       |||||| |||||                      u
                        ugag       cagguu augau                      a
--------------------ucac    uucaaac      u     uacauagagaaauuuuuugcaa 

>bdi-MIR1135 (-49.50)   [bdi-miR1135:101-124]

aggagcauaauua            ac   u          ucaaauuugcccaaauacggauguaucuau 
             guacuuccuccg  cgg auuacuuguc                              g
             ||||||||||||  ||| ||||||||||                              u
             cgugagggAGGC  GCC UAAUGAACAG                              g
-------uaauac            CA   U          CUUUauaauguacauagaucugugcaaaau 

>dme-mir-307-as (-39.57)   [dme-miR-307-as*:32-53] [dme-miR-307-as:73-94]

u    uc ug auacuc    c    a c          GGA  U       Gauaccau 
 aguu  g  g      uguc ugcu u gcUCACUCAA   GG UGUGAUG        a
 ||||  |  |      |||| |||| | ||||||||||   || |||||||         
 ucaa  c  c      acag acga a UGAGUGAGUU   CC ACACUac        u
u    -u gu -guaaa    a    a C          GGA  C       aauaaagc 

>dme-mir-2489 (-27.00)   [dme-miR-2489:62-83]

-  a  aaguu    - ug    ug  u      au   - --      g 
 gc au     agac g  agua  gc auacaa  cau c  uggaac u
 || ||     |||| |  ||||  || ||||||  ||| |  ||||||  
 cg ua     uuUG C  UUAU  UG UAUGUU  gua g  aucuug a
a  a  -guau    A GU    GU  -      AU   u ua      a 

>dme-mir-2490 (-34.90)   [dme-miR-2490:9-31]

ga       G           C   UU     cu  uc 
  gcgaguU AAGCGAUAAAG AGG  GCAAa  gc  u
  ||||||| ||||||||||| |||  |||||  ||   
  cgcucaa uucgcuauuuc uuc  cguuu  cg  c
aa       a           a   -u     --  cu 

>dme-mir-2491 (-53.00)   [dme-miR-2491:18-39]

-----cgc   c   uuu    C        CU    A         uuccauguugcuacugcggccaauugu 
        gaa cac   gugc GCUGUUGC  UUGC GUUGCUguu                           u
        ||| |||   |||| ||||||||  |||| |||||||||                            
        cuu gug   cacg cgaugacg  aacg cgacgacaa                           g
agcuuuca   a   -cu    a        uc    a         caacuacaacaacuacaacgacuacgc 

>dme-mir-2492 (-21.60)   [dme-miR-2492:47-69]

-         u gg u     u         uuau  uu 
 gaauuuuuu g  a cucuu auaaagcgu    ua  u
 ||||||||| |  | ||||| |||||||||    ||   
 cuuaaaAAA C  U GAGAG UGUUUUGUA    au  a
a         - UU C     C         --uu  uu 

>dme-mir-2493 (-37.60)   [dme-miR-2493*:23-43] [dme-miR-2493:68-90]

c   auua   a   cc       -  A    --C      A      ------   a 
 gcu    uua aac  ccaacGC UC CACA   ACACAC GCCAug      ugc u
 |||    ||| |||  ||||||| || ||||   |||||| ||||||      ||| g
 cga    agu uug  gguUGCG AG GUGU   UGUGUG Cgguau      acg g
-   --cc   c   -c       G  C    UUA      C      caaaaa   a 

>dme-mir-2494 (-45.00)   [dme-miR-2494*:23-43] [dme-miR-2494:71-94]

       -         c -a  --a       C  CAG          accuucaaaa 
uccaucu uccgaccgg g  uc   GUAAGUG AC   AUUGGGAAua          g
||||||| ||||||||| |  ||   ||||||| ||   ||||||||||          c
agguggg agguugguc c  ag   CAUUCAC UG   UGACCCUUau          u
       u         c cg  GAA       C  UAA          aaauucaacg 

>dme-mir-2495 (-47.30)   [dme-miR-2495:27-48] [dme-miR-2495*:66-89]

-   a     -ac    -  -   - g    U    C       -  -    A    g  u 
 ugu ugauc   auug gc uug u ggcg GGCA UUCAAUU GG GCUG CUuu cc g
 ||| |||||   |||| || ||| | |||| |||| ||||||| || |||| |||| || g
 aca gcuag   uagc cg gac a CCGC CCGU AAGUUAA CC CGGC gaaa gg c
c   -     cau    u  u   u g    -    A       U  A    -    a  u 

>dme-mir-2496 (-54.50)   [dme-miR-2496*:11-34] [dme-miR-2496:86-107]

     c --g               AG   A      aagcc    uu   u   -   uuua 
gugcg c   guGUGCGUGUGUGAG  GCC UCGUAa     uugu  gcg gcg gaa    a
||||| |   |||||||||||||||  ||| ||||||     ||||  ||| ||| |||     
cacgc g   uAUACGCACACACUC  CGG GGCGuu     agcg  ugc cgc cuu    c
     c acu               -A   -      ----a    uc   -   u   uugu 

>dme-mir-2497 (-26.69)   [dme-miR-2497*:11-35] [dme-miR-2497:57-78]

  a     u   ---A   A       --A    ---        auucgcu 
gc cguca cGU    AGC UUGCAAA   UGUA   GUUGUUaa       c
|| ||||| |||    ||| |||||||   ||||   ||||||||        
cg guagu gca    ucg GACGUUU   ACAU   CAACAauu       u
  -     u   acug   -       GUA    UUA        acuaacu 

>dme-mir-2498 (-22.00)   [dme-miR-2498*:29-52] [dme-miR-2498:64-86]

   a    -ccauaaucuc  u      -    A   U UU     UAU       u 
cac uuug           cu aaaaua gUAA GGC G  AUGCU   UUUUGug u
||| ||||           || |||||| |||| ||| |  |||||   ||||||| u
gug aaac           ga uuuuaU CAUU CUG C  UACGG   AAAacau u
   -    cacauucaaaa  c      U    -   C CU     -UC       u 

>dme-mir-2499 (-42.20)   [dme-miR-2499*:22-45] [dme-miR-2499:60-83]

uccuugc    g      u    UG   AG C    -G    --A    uu 
       ugug gugugg ugCG  CGU  A GUCA  CGCA   UGCc  u
       |||| |||||| ||||  |||  | ||||  ||||   ||||  g
       acac cacgcc AUGC  GCA  U CAGU  GCGU   gcgg  u
------u    a      u    CU   CU A    AG    Acg    uu 

>dme-mir-2500 (-16.70)   [dme-miR-2500*:1-25] [dme-miR-2500:46-67]

-GUA   AA        UAC   A  -----     a 
    AGG  CACACAUA   AAU CC     guuug a
    |||  ||||||||   ||| ||     ||||| u
    UCC  GUGUGUGU   UUA GG     uaaac u
aGAC   AG        --U   -  acuaa     u 

>dme-mir-2501 (-29.10)   [dme-miR-2501:32-55] [dme-miR-2501*:77-99]

-  acuu   g  a  ggg    aaaagu    U        AG   CU   C    aac   ca 
 gc    uug ca gc   uggu      ggaG AAGUUUGG  UGC  GGG UAAg   uuc  u
 ||    ||| || ||   ||||      |||| ||||||||  |||  ||| ||||   |||   
 cg    gac gu cg   acca      UUUC UUCAAACU  ACG  CUC auuc   aag  u
a  ----   g  g  --a    --agac    U        -A   UU   A    --a   uc 

>dps-mir-989 (-49.20)   [dps-miR-989:90-111]

a   ug        gg       c     g        ---ua  -----          gaucu 
 cgu  cgggaaug  ccacuac ucgca ucacguga     uc     ggaaugcaau     a
 |||  ||||||||  ||||||| ||||| ||||||||     ||     ||||||||||      
 gcg  guccuuAC  GGUGAUG AGUGU AGUGUacu     ag     cuuuguguua     c
-   --        AA       C     -        ugaua  uuuuu          aauug 

>dps-mir-981 (-42.40)   [dps-miR-981*:14-35] [dps-miR-981:56-77]

-       u aaau          UA          guua   a 
 uccacau g    CGGGUUUCGU  ACAGCGGGCU    uga u
 ||||||| |    ||||||||||  ||||||||||    ||| a
 aggugug c    GUCCAAAGCA  UGUUGCUUga    acu a
g       u guAC          GC          -aca   a 

>dps-mir-970 (-35.00)   [dps-miR-970*:13-36] [dps-miR-970:57-77]

-      u   gc    A   G        UC      cug  cc 
 ggcauc guu  AGCU GCG GUGUUUUA  UGGUAg   ua  c
 |||||| |||  |||| ||| ||||||||  ||||||   ||   
 ccguag cag  UCGG CGC CACAGAAU  ACUauc   gu  u
c      c   UA    -   A        --      uaa  uu 

>dps-mir-980 (-36.51)   [dps-miR-980*:29-52] [dps-miR-980:73-93]

  c       agaaacaaauuga         UC     U   U  U     ugacuugu 
gc acaaaag             augugAGUC  UCACA GGC GG CUAGC        u
|| |||||||             |||||||||  ||||| ||| || |||||         
cg uguuuuu             ugcaUUCGG  AGUGU CCG UC GAUcg        u
  a       ------------g         GA     U   -  -     uuauaauc 

>dps-mir-971 (-34.20)   [dps-miR-971*:15-38] [dps-miR-971:57-78]

-   -- - -   u            AUU      G    A   u  uug 
 gga  c c cca cgcucGCUGUAA   GUAAUG CCAA GCu uu   u
 |||  | | ||| ||||||||||||   |||||| |||| ||| ||    
 ccu  g g ggu gugAGUGACAUU   CAUUGU GGUU cga ga   u
a   uu c a   -            CUU      -    -   c  ugg 

>dps-mir-190 (-35.80)   [dps-miR-190*:17-40] [dps-miR-190:58-80]

a     g  uc      -            AU      U  uu  auu 
 uuggg au  cagugA GAUAUGUUUGAU  UCUUGG UG  ac   c
 ||||| ||  |||||| ||||||||||||  |||||| ||  ||    
 ggccc ua  gucAUU UUAUACAAACUA  AGGACC ac  ug   a
a     a  gu      A            --      C  -u  aga 

>dps-mir-957 (-38.70)   [dps-miR-957*:15-37] [dps-miR-957:62-83]

-    -    -a   a          C    U    UG  gugcugg     u 
 uguc caca  ugg cCUUAGUUUU GACG GUUU  GU       ggagu g
 |||| ||||  ||| |||||||||| |||| ||||  ||       |||||  
 acgg gugu  acC GGAGUCAAAA CUGC CAAA  ua       ccuua a
u    c    ca   -          C    -    GU  ------g     u 

>dps-mir-958 (-30.40)   [dps-miR-958:21-43] [dps-miR-958*:63-84]

    c     guau    c           C   CUUA     u  uccau 
cgau ggugu    uugg aAGUAGAAUAG AGG    UCACA gu     u
|||| |||||    |||| ||||||||||| |||    ||||| ||      
guug ccaca    agcU UUCAUCUUAUC UCU    AGUgu cg     c
    c     -aac    -           U   -UAG     -  ccuaa 

>dps-mir-988 (-27.80)   [dps-miR-988*:20-41] [dps-miR-988:56-77]

--------gac     ---a  u   g      U A    UG    A U   aug a 
           ugugg    ca uuu gguGUG G UUUG  GCAA G GAU   c u
           |||||    || ||| |||||| | ||||  |||| | |||   |  
           acacc    gu gaa cCGCAC C AAAC  UGUU C Cua   g u
cucucacaucc     cuaa  u   a      U C    GU    C C   cua u 

>dps-mir-987 (-30.30)   [dps-miR-987:24-47] [dps-miR-987*:67-90]

   --aa   a    -       gc  A        A     GAU       ag  au 
cag    aua uguu ggacugu  uU AAGUAAAU GUCUG   UGAUGaa  uu  a
|||    ||| |||| |||||||  || |||||||| |||||   |||||||  ||  u
guc    uau gcaa uuugacg  AA UUCAUUUA CGGAC   ACUACuu  ga  u
   aacg   a    a       UC  C        -     --A       aa  ac 

>dps-mir-137 (-34.42)   [dps-miR-137*:27-49] [dps-miR-137:65-86]

-  cg  gacua       caac   c        A    U   U     cugau 
 ga  gc     gaaucuu    ggc ACGUGUAU CUCA AGC AUAAC     a
 ||  ||     |||||||    ||| |||||||| |||| ||| |||||     u
 cu  cg     cuuagaa    uuG UGCACAUA GAGU UCG UAUug     c
a  aa  acuug       caau   A        A    -   U     uaagc 

>dps-mir-994 (-36.35)   [dps-miR-994:22-41] [dps-miR-994*:67-86]

-   aau     -uc            -           C     uuaacauaca 
 cug   uuaua   gaguuaucUAAG GAAAUAGUAGC GUGAu          a
 |||   |||||   |||||||||||| ||||||||||| |||||           
 gac   aaugu   cucgauagAUUU CUUUGUCGUUG CACua          a
c   --g     uuu            U           A     uacauuuccu 

>dps-mir-311 (-41.80)   [dps-miR-311*:28-49] [dps-miR-311:67-88]

-g  u     uguu      a   c    A  UG -   A  G         -  uug 
  ug auucg    cggugg uac uucA GC  G GGG UG GCAAUACUg ug   u
  || |||||    |||||| ||| |||| ||  | ||| || ||||||||| ||    
  ac ugggu    gucauc gug aAGU CG  C CCC AC CGUUAUgac ac   a
ca  u     ---c      c   a    C  GU A   -  A         c  uuu 

>dps-mir-92c (-34.80)   [dps-miR-92c*:33-55] [dps-miR-92c:67-88]

-  ggaag g   au  a  --    -   a   guA     U    CU     A    gau 
 gc     g ugc  cg gc  ugcu uug uuu   GGCCG GGUU  UGCAA UACG   u
 ||     | |||  || ||  |||| ||| |||   ||||| ||||  ||||| ||||   c
 cg     c acg  gc cg  acga aac aaa   CUGGC CCGA  ACGUU AUgc   a
a  ----a a   --  -  ca    u   a   AAC     C    UC     -    aau 

>dps-mir-968 (-36.26)   [dps-miR-968:27-50] [dps-miR-968*:67-90]

       ----  aauu    ca    -ccuU        UC             ucaucu 
uaguucu    ac    gcug  gcuu     AAGUAGUA  CAUUAAGAGGUCG      a
|||||||    ||    ||||  ||||     ||||||||  |||||||||||||      g
gucaaga    ug    ugac  cgaa     UUCAUCAU  GUAGUUUUCCAGc      c
       caac  aaac    -a    aAAAU        --             uaaaau 

>dps-mir-1002 (-42.20)   [dps-miR-1002:29-51] [dps-miR-1002*:70-91]

-  c    ccu  ca             cC       U G      GG    uaau  aa 
 gg aggu   cu  aaauaaucgggca  UAAGUAG U AUACAA  GCGA    gu  a
 || ||||   ||  |||||||||||||  ||||||| | ||||||  ||||    ||   
 uc ucca   ga  uuuguuagcucgU  AUUCAUC A UGUGUU  CGcu    ca  a
a  -    -ac  ac             AA       C G      -A    --uu  ag 

>dps-mir-965 (-29.52)   [dps-miR-965*:15-37] [dps-miR-965:57-78]

-  -    aaa         UC  A         CUA     caaua 
 gc ucaa   uuugaGGGG  AA CUGUACGUU   UGuga     u
 || ||||   |||||||||  || |||||||||   |||||     u
 cg aguu   aaaUUCCCC  UU GAUAUGCGA   AUacu     c
a  u    -ca         UU  C         ---     uaaag 

>dps-mir-1006 (-18.00)   [dps-miR-1006*:15-40] [dps-miR-1006:56-78]

gcguca    ucag      UU         AUGUG       uu 
      acuu    GUGAGU  GAAAUUGAA     UAAAuug  u
      ||||    ||||||  |||||||||     |||||||  g
      ugGA    UACUUA  CUUUAGCUU     AUuuaac  u
----cg    ----      UU         ---AA       cg 

>dps-mir-375 (-32.40)   [dps-miR-375*:13-36] [dps-miR-375:56-77]

-     gc   --uu            G   UU      --g  auc 
 gggca  gaa    ACUUGGGCCAGG GAA  CAAACU   ug   g
 |||||  |||    |||||||||||| |||  ||||||   ||   c
 uccgu  cuu    UGAAUUCGGUUU CUU  GUUUga   ac   a
c     -a   uuAU            G   --      aaa  gua 

>dps-mir-964 (-45.29)   [dps-miR-964*:36-57] [dps-miR-964:70-91]

   aucc    gccaaauag     aa    u      U  A      C         ggg 
ggg    ccgu         agcca  acua cuuAGA CG AGGUUC UGGCUUACa   a
|||    ||||         |||||  |||| |||||| || |||||| |||||||||   u
ccc    ggca         ucggu  ugau gaAUCU GC UCCAAG AUUGAAUgu   u
   ----    --acuacua     -a    c      C  C      A         agu 

>dps-mir-959 (-33.70)   [dps-miR-959*:22-43] [dps-miR-959:66-87]

------uuuu     g uu       - U         G U        A ca    u 
          guuuu g  cuauguu c UAGUACUUG G UGAUAAAG c  cucg a
          ||||| |  ||||||| | ||||||||| | |||||||| |  |||| g
          cgaaa c  gauacaA G AUUAUGGGC C ACUGUUuc g  gagu u
uaaaacaacg     a uc       C U         G U        c aa    g 

>dps-mir-932 (-43.60)   [dps-miR-932:29-51] [dps-miR-932*:72-93]

-   c  uac   auu  -     ug   c    U          A        --ua   u 
 ggu gu   ugc   gg ugucg  gcu UCAA UCCGUAGUGC UUGCAGUu    aua a
 ||| ||   |||   || |||||  ||| |||| |||||||||| ||||||||    |||  
 ucg ca   acg   cc auagc  cgA GGUU AGGUGUCGCG AACGUcaa    uau a
g   a  caa   ---  g     cu   C    C          -        caac   u 

>dps-mir-252 (-37.10)   [dps-miR-252:21-42] [dps-miR-252*:65-87]

-    -    - g --u       cC        A U  C       uuag   -  u 
 cauu uugg c g   uugcuuu  UAAGUACU G GC GCAGGAG    guu cg g
 |||| |||| | |   |||||||  |||||||| | || |||||||    ||| ||  
 guga aacc g u   ggcgaaA  AUUCGUGA C CG CGUCCUc    uaa gc u
a    c    u g ggc       UU        A C  U       --ca   c  c 

>dps-mir-993 (-42.50)   [dps-miR-993*:11-34] [dps-miR-993:81-103]

-  -   -    cC    C     UUC          ---u  -    -u    c   ug 
 cu ccc guga  UACC UGUAG   CGGGCUUUUG    uu auau  gcgc cga  u
 || ||| ||||  |||| |||||   ||||||||||    || ||||  |||| |||  a
 ga ggg cacU  AUGG ACAUC   GCUCGAAGac    ag ugug  ugug gcu  u
a  u   a    CU    -     UCU          uauu  c    uu    a   uu 

>dps-mir-1000 (-41.90)   [dps-miR-1000:15-36] [dps-miR-1000*:58-79]

       gc  u  A  U       U A        --      c 
ggcgcuu  ca ug UA UGUCCUG C CAGCAGUA  uuguaa u
|||||||  || || || ||||||| | ||||||||  |||||| u
ccgcgag  gu AC AU ACGGGGC G GUCGUCau  gauauu a
       uu  u  A  U       U G        cc      a 

>dps-mir-929 (-42.20)   [dps-miR-929:24-45] [dps-miR-929*:60-81]

cacggcaa     gca c       A        AG         -   u 
        uuccu   g aguucAA UUGACUCU  UAGGGAGUC cuu u
        |||||   | ||||||| ||||||||  ||||||||| ||| a
        aagga   c uuaAGUU GACUGAGG  AUCCCUCag gag u
-------c     -ac a       A        CA         c   u 

>dps-mir-927 (-33.06)   [dps-miR-927:15-36] [dps-miR-927*:56-77]

    a ug   u            CU       A   uugcaa 
ggau u  uag guUUUAGAAUUC  ACGCUUU CCg      a
|||| |  ||| ||||||||||||  ||||||| |||      a
ucug a  auc CAAAGUCUUAGG  UGCGAAA ggc      c
    - gu   c            UU       C   uuaaag 

>dps-mir-995 (-46.40)   [dps-miR-995*:14-36] [dps-miR-995:55-75]

    c  a        C     C    U        -  gugu 
gcug ac acgcaGCC GGAUU UGUG GUGCUGCG cu    u
|||| || |||||||| ||||| |||| |||||||| ||    c
cgac ug ugcGUCGG CUUAG ACAC CACGAUgc ga    u
    -  g        -     U    -        c  aaau 

>dps-mir-1010 (-34.90)   [dps-miR-1010*:23-43] [dps-miR-1010:73-96]

c    gugu       caacgg        ---U    A        a     -   cc 
 gucc    ucgugcu      GUAAGUGG    GUAG UGAAACAa uuaac caa  u
 ||||    |||||||      ||||||||    |||| |||||||| ||||| |||   
 uagg    agcaugG      CGUUUACC    UAUC ACUUUguu gguug guu  u
-    ----       -----A        UUGC    C        a     u   au 

>dps-mir-969 (-37.09)   [dps-miR-969*:20-40] [dps-miR-969:60-80]

a   -  ---------------    u     ug       C  CAUG        gagcgua 
 gga gc               cugu cuacg  cGAGUUC AC    CAAGUUUU       u
 ||| ||               |||| |||||  ||||||| ||    ||||||||       a
 ccu cg               gacg ggugc  GCUCGAG UG    GUUCAAaa       u
-   a  cgacgcuacuaaacc    u     gU       U  CACA        accuaag 

>dps-mir-193 (-30.20)   [dps-miR-193:13-36] [dps-miR-193*:69-90]

   a c      A          UU   AU   C  -----      cu    a 
ugc c cauuau GUUGGGAUUU  UAG  CAG AG     uuauug  auac g
||| | |||||| ||||||||||  |||  ||| ||     ||||||  ||||  
aug g guaaua CAACCCUGAA  AUC  GUC Uc     aauaau  uaug c
   a a      -          UC   CG   A  uucua      --    c 

>dps-mir-986 (-37.50)   [dps-miR-986:15-36] [dps-miR-986*:56-77]

a   -          U  C            GA    --u  c   a 
 cug aaacaacccg CU GAAUAGCGUUGU  CUGA   ga ugc u
 ||| |||||||||| || ||||||||||||  ||||   || |||  
 ggc uuuguugggu GA CUUAUCGUGACG  GACU   uu aug u
-   g          u  C            GC    Cuu  a   u 

>dps-mir-307-as (-31.07)   [dps-miR-307-as:54-75]

-  c    a c          gga  u       gauaccau 
 uc ugcu u gcucacucaa   gg ugugaug        a
 || |||| | ||||||||||   || |||||||         
 ag acga a UGAGUGAGUU   CC ACACUac        u
c  a    a C          GGA  C       aauaaagc 

>dps-mir-263a-as (-34.90)   [dps-miR-263a-as:13-32]

-      -   cauA    C    --     A       -  gua 
 gucccg cac    GAUG CACU  AAGAG UCACggg uu   u
 |||||| |||    |||| ||||  ||||| ||||||| ||   u
 uagggc gug    uuac guga  uucuu agugccc aa   g
g      c   ucaa    c    cc     a       c  aaa 

>dps-mir-210-as (-33.92)   [dps-miR-210-as:63-84]

u   ---   aaua   ccu    caa    c    -    ac        gucuu 
 gau   gcu    ugg   cuua   uagc gcug ucac  gcacaaga     a
 |||   |||    |||   ||||   |||| |||| ||||  ||||||||     a
 cua   cga    gcc   gaau   GUCG CGAC GGUG  CGUGUUcu     a
a   aau   gcua   -au    aaC    A    C    -A        aaucu 

>dps-mir-iab-4-as (-36.80)   [dps-miR-iab-4-as:19-40] [dps-miR-iab-4-as*:56-78]

u   g    uu c      U            G    A  g  ua g 
 gcu gugu  c ucgugU ACGUAUACUGAA GUAU CC ga  g a
 ||| ||||  | |||||| |||||||||||| |||| || ||  |  
 ugg cacg  g agcAUA UGCAUAUGACUU CAUA GG cu  c u
-   a    cu a      -            A    -  A  ca a 

>dps-mir-2502 (-65.70)   [dps-miR-2502:29-49]

       caa  -gca          a           C A   A     aga   a 
gcugcaa   cg    ggcggcggca cgGCGGCAGCG C GCA CAGCU   guu u
|||||||   ||    |||||||||| ||||||||||| | ||| |||||   |||  
ugacguu   gc    ccgucgucgu gccgucgucgu g cgu gucga   cag a
       aag  aaac          c           a c   c     ---   g 

>dps-mir-2503 (-61.20)   [dps-miR-2503:67-87]

   ucu    caccau     -c    uc                           ggg 
gcu   cgcu      gaauu  ccac  gaaaauaugauaugcucggcauccucc   c
|||   ||||      |||||  ||||  |||||||||||||||||||||||||||   a
cga   gcga      cuuag  ggug  cuuuUAUAUUAUACGAGCCGUAGGAgg   g
   --c    ----cu     au    uu                           aag 

>dps-mir-2504 (-14.50)   [dps-miR-2504:13-34]

-  cu    ucugG         -  A       UU   u aa 
 gu  cgga     UAAGGAUUA AG UUAAAUG  gau c  a
 ||  ||||     ||||||||| || |||||||  ||| |   
 ca  gucu     guucuugau uc aauuugc  cug g  u
a  -u    ----u         c  c       -c   u gc 

>dps-mir-2505 (-33.62)   [dps-miR-2505:13-34]

-     --a    uuUC           A        uuuug 
 ggaag   auca    GUGCACAUACA ACAUACAC     u
 |||||   ||||    ||||||||||| ||||||||     u
 ccuuu   uagu    caugugugugu ugugugug     g
a     aua    uaua           g        ugugu 

>dps-mir-2506 (-32.80)   [dps-miR-2506:83-104]

cu cc  uc       u  a     u    a     c  -----au       c      a 
  g  ca  uauuuuc gg cggag uugc caaua gu       uuauaua auacau c
  |  ||  ||||||| || ||||| |||| ||||| ||       ||||||| ||||||  
  c  gu  guaaaAG CC GCUUC GACG GUUAU ca       aauguau uaugua a
-a au  uu       U  G     U    -     A  auuguuu       a      u 

>dps-mir-2507a (-32.50)   [dps-miR-2507a:62-85]

       -  --    -ac     a           uu     c      uu   u 
auuuaua ac  gaca   aaauu gugggcaugaa  ugugc aauauu  auu u
||||||| ||  ||||   ||||| |||||||||||  ||||| ||||||  |||  
uagauau ug  cugu   uuuaA UAUCCGUGCUU  ACAUG UUGUaa  uaa u
       c  cu    aac     A           UU     -      -u   u 

>dps-mir-2508 (-57.01)   [dps-miR-2508:63-84]

    -------               auc                   cggg    uc 
uacc       uaaauccgcggggcc   ugcuuauuaggggucugcu    auua  a
||||       |||||||||||||||   |||||||||||||||||||    ||||   
augg       auuuaggcgcccUGG   ACGAAUAAUCUCUAGAUgg    uggu  a
    cuaaccc               -AA                   ---a    ua 

>dps-mir-276c (-39.50)   [dps-miR-276c:67-89]

-    -   -c  g     au  a   -      c   -      c   --a  uu    a 
 gagu gau  ca agcgg  au cca ucagcc ugu uucgag uuc   uu  cguu a
 |||| |||  || |||||  || ||| |||||| ||| |||||| |||   ||  |||| a
 cuca cua  gu uuguc  ua ggu AGUUGG ACA GAGUUC AAG   aa  gcag u
a    u   aa  a     cu  -   u      A   A      -   GAA  gg    u 

>dps-mir-2509 (-29.90)   [dps-miR-2509:24-45]

-  a   aaa   a  -  u  u   UU       AG CU    -       
 ug ugc   ugg gc ag cg guU  AAGGUAC  A  UUGA GUCuau 
 || |||   ||| || || || |||  |||||||  |  |||| ||||| u
 ac acg   acc cg uc gc uaa  uucuaug  u  aacu cggauc 
g  a   aca   g  g  u  u   uu       cu uu    a       

>dps-mir-2510 (-36.70)   [dps-miR-2510:23-44]

-  uu   ---a   -a        auU A        U            guau 
 gu  uga    uuc  cauucugc   G AAAAGCAA GGAUAAUAGAau    u
 ||  |||    |||  ||||||||   | |||||||| ||||||||||||     
 cg  gcu    agg  guagggcg   c uuuucguu cuuguuaucuua    u
a  cu   gacg   gg        aau c        c            aacg 

>dps-mir-2511-1 (-33.70)   [dps-miR-2511:74-95]

  aa    u  ccccaccaaau    a   g    a        a   uu       --    u 
ga  gugu uc           gcac uuc ugcu uauggcac cag  gauuuau  auua u
||  |||| ||           |||| ||| |||| |||||||| |||  |||||||  |||| u
cu  uacg ag           ugug aag acgA AUACCGUG GUU  CUGAAUa  ugau u
  cc    u  -----------    -   a    G        A   GU       cu    c 

>dps-mir-2511-2 (-33.40)   [dps-miR-2511:52-73]

-       - g    a        a   uu       --    u 
 ucacauu c ugcu uauggcac cag  gauuuau  auua u
 ||||||| | |||| |||||||| |||  |||||||  |||| u
 aguguga g acgA AUACCGUG GUU  CUGAAUa  ugau u
u       a a    G        A   GU       cu    c 

>dps-mir-2512 (-42.34)   [dps-miR-2512:57-78]

-   cc    uaauucuuag         -   -   u       gucc   g 
 gcu  gugg          gccgacagg guc ccg gaguguu    ggc a
 |||  ||||          ||||||||| ||| ||| |||||||    |||  
 cga  cgcc          uggcuGUUC UAG GGC CUUACGG    ccg u
a   ua    ------ucua         A   U   U       --AU   a 

>dps-mir-2513a (-68.97)   [dps-miR-2513a:25-46]

                            G  A               auaaggaauaau 
guagaggaccaacgugcuaccaugUAAA CA CUUCAGACCAUAGUa            a
|||||||||||||||||||||||||||| || |||||||||||||||             
cauuuccugguugcaugaugguacauuu gu gaaguuugguauuau            u
                            g  a               aaaguuaaaaag 

>dps-mir-2514 (-28.10)   [dps-miR-2514:13-35]

a    gg  cac               -AGU  UCCau    g 
 aauu  gu   UUACAGCUUCAAUAC    GG     cgcu a
 ||||  ||   |||||||||||||||    ||     ||||  
 uugg  ca   agugucgagguugug    cc     gcgg a
-    aa  -aa               cuuu  -----    a 

>dps-mir-2515 (-42.40)   [dps-miR-2515:14-34]

      auac   U   GA     --      AU   ---ac     u         u 
ccuagg    gcc GAU  GUGUU  UUCCCA  UUg     ugugg gguuguggg a
||||||    ||| |||  |||||  ||||||  |||     ||||| ||||||||| g
ggguuc    cgg uug  cacaa  gagggu  gac     auauc ccgacaucc a
      -aca   -   -a     cc      gu   gguua     u         c 

>dps-mir-2518-3 (-47.60)   [dps-miR-2518:71-93]

cggccaacgggcagccacacacacacacacgac        a        gaa        g 
                                 cggaucga cccguugc   ucgaacuu g
                                 |||||||| ||||||||   |||||||| u
                                 GCCUAGCU GGGCGACG   AGCUugag u
------------------ccgacccgauacCGA        -        ---        u 

>dps-mir-2518-2 (-39.00)   [dps-miR-2518:61-83]

gggcagccacacacacacacgac  uu       c     gaa        g 
                       cg  ucgaccc guugc   ucgaacuu g
                       ||  ||||||| |||||   |||||||| u
                       GC  AGCUGGG CGACG   AGCUugag u
-----------acccgauacCGA  CU       -     ---        u 

>dps-mir-2518-4 (-47.60)   [dps-miR-2518:71-93]

cggccaacgggcagccacacacacacacacgac        a        gaa        g 
                                 cggaucga cccguugc   ucgaacuu g
                                 |||||||| ||||||||   |||||||| u
                                 GCCUAGCU GGGCGACG   AGCUugag u
------------------ccgacccgauacCGA        -        ---        u 

>dps-mir-2513b (-52.27)   [dps-miR-2513b:77-98]

   a           a            c  u     a      a  uuucaauuuuuc 
gua aggaccaacgu cuaccauguaaa ca cuuca accaua ua            a
||| ||||||||||| |||||||||||| || ||||| |||||| ||             
cau uccugguugca gaugguACAUUU GU GAAGU UGGUAU au            u
   c           c            C  U     C      c  uauuccuuauua 

>dps-mir-2516 (-32.60)   [dps-miR-2516:52-71]

   ccc   uuuauaa          c  u  uc      cc 
gcc   ucc       gggcucgugu gg gc  accguu  c
|||   |||       |||||||||| || ||  ||||||   
cgg   aGG       CCCGGGUACA UC CG  Uggcaa  u
   -ca   -----UG          U  -  --      ug 

>dps-mir-2517b (-27.30)   [dps-miR-2517b:24-46]

     ---------g  aaau   cc             --CC      A       -u   a 
gccgg          uc    ggu  agaguuUUCAGAU    UCAAAU CAAUAUG  auu u
|||||          ||    |||  |||||||||||||    |||||| |||||||  ||| u
ugguc          ag    uca  uuucaaaaguuua    gguuua guuauac  uaa u
     aunnnnnnca  -aau   cu             nngu      -       uu   g 

>dps-mir-2518-1 (-44.80)   [dps-miR-2518:59-81]

gggcagccacacacacacgac        a        gaa           
                     cggaucga cccguugu   ucgaacuugg 
                     |||||||| ||||||||   ||||||||| u
                     GCCUAGCU GGGCGACG   AGCUugagcu 
---------acccgauacCGA        -        ---           

>dps-mir-2574b (-43.40)   [dps-miR-2574b:43-64]

a                   g         uug 
 auuucuggucucuccauuu guauugcgu   u
 ||||||||||||||||||| |||||||||   u
 uaaaGACCAGAGAGGUAAA CAUAACgca   g
-                   A         uau 

>dps-mir-2528-2 (-36.10)   [dps-miR-2528:24-47]

-    aa     -c  auuuau   UUU    U   -   C   -  U            u 
 acgg  uuuua  gu      ccg   UGUC GUA UCG GAA GU UGGagucguuuu g
 ||||  |||||  ||      |||   |||| ||| ||| ||| || ||||||||||||  
 ugcc  agaau  ca      ggu   auag cau agc uuu cg accuuagcgaag u
u    gg     aa  --guuc   uuu    u   g   u   a  c            u 

>dps-mir-2519 (-33.60)   [dps-miR-2519:26-48]

g   cu  c      ---auu   u   -   UG     UU         AUaca    augaa 
 ugc  gg ggccgg      gaa aac GUA  UGGAA  GAAGUUGAU     uucc     c
 |||  || ||||||      ||| ||| |||  |||||  |||||||||     ||||      
 acg  uc ccggcc      cuu uug cau  acuuu  cuuuaacua     aggg     a
-   --  -      cuuguu   c   a   ua     uu         ----c    aguuu 

>dps-mir-2520 (-38.21)   [dps-miR-2520:68-91]

-  gagu    uucaagaacg   c    u           -c  -      c     aau 
 gg    ugau          gau guag acugaucgaga  gc uugcua uggag   u
 ||    ||||          ||| |||| |||||||||||  || |||||| |||||    
 cc    gcua          cua cguc UGAUUAGCUUU  CG AACGAU Accuu   c
a  auac    -cgaaaaaaa   a    u           CC  C      A     cag 

>dps-mir-2521 (-35.60)   [dps-miR-2521:54-75]

-      a     gga    a            uc    aua   u 
 ggauug cggug   ggug uuaggccaaauu  auug   gau c
 |||||| |||||   |||| ||||||||||||  ||||   ||| g
 ccuaac gccau   UUAC GAUCCGGUUUAA  UAAc   cua a
a      -     AGC    -            --    ---   a 

>dps-mir-2522a (-39.60)   [dps-miR-2522a:66-88]

    c   uu   -c     aa     ag         -       a    -ug  u 
gcuc auu  gua  gauug  guacu  cggagaaug cguuguu uugg   uc g
|||| |||  |||  |||||  |||||  ||||||||| ||||||| ||||   ||  
ugag uga  uau  cuaac  cauGA  GCUUCUUGU GCGACGA Aacc   ag u
    -   uu   aa     ac     CG         A       A    uaa  g 

>dps-mir-2523 (-30.90)   [dps-miR-2523:65-86]

----ucaaaugagaaugaaau   a      a          uu    c     uuuu 
                     gag uacuuu gguuauaugu  uuac uucgg    u
                     ||| |||||| ||||||||||  |||| |||||    u
                     cuc gugAGA CUAGUAUACA  AAUG AAguc    g
cagcuuacaccgguucuuugu   c      G          UC    -     uaug 

>dps-mir-2524 (-35.10)   [dps-miR-2524:60-81]

-      uauaguuu            gu  c   c   -   -     ga 
 gaguua        guaguuggcccg  uc cag aca ugu auguu  a
 ||||||        ||||||||||||  || ||| ||| ||| |||||   
 cucgau        uauuaACCGGGC  AG GUC UGU AUa uauaa  u
a      --------            UC  C   A   U   c     au 

>dps-mir-2525 (-41.50)   [dps-miR-2525:71-92]

     aucca   a  uugcuu    c     c   u        ug   ---c   uu 
cgagu     uag ug      gcug ugcug cgc guugcugc  guu    ugc  c
|||||     ||| ||      |||| ||||| ||| ||||||||  |||    |||  u
guuca     auc ac      cgac GCGAC GCG CAACGGCG  Caa    gcg  g
     acuuc   -  ------    A     A   U        GU   uuuu   cc 

>dps-mir-2526 (-58.70)   [dps-miR-2526*:69-92] [dps-miR-2526:79-98]

     gg ug   u          -   ug ua    u           -   g 
gcggu  u  ccg cggcguguug cgg  g  gccg cggcguguuga ggu g
|||||  |  ||| |||||||||| |||  |  |||| ||||||||||| |||  
ugccg  g  GGC GUUGUGCGGC GCC  U  UGGC GUugugcggcu ccg u
     uu GU   -          U   GU GG    -           g   u 

>dps-mir-2545b (-65.40)   [dps-miR-2545b:83-103]

        a     u    -g  c       c        a      --auu    aua 
uccuccuc aggag aaau  uu uacugcg gagggcau gggcag     cuca   u
|||||||| ||||| ||||  || ||||||| |||||||| ||||||     ||||    
aggaggag uccuc UUUA  AA AUGACGC CUCccgua ccuguc     gggu   u
        c     C    AG  C       A        g      gucuc    ccc 

>dps-mir-2527 (-44.40)   [dps-miR-2527:11-31]

-     u   a G     U     U        a    gc   c   u   aa    ag 
 ucgua uca U AUGGA GUAGG GUAGAGAg aagg  gca cag caa  aaag  a
 ||||| ||| | ||||| ||||| |||||||| ||||  ||| ||| |||  ||||  u
 aguau agu a uacuu uaucu cgucucuc uuuc  ugu guc guu  uuuc  u
g     c   c g     u     c        a    aa   c   u   gc    gg 

>dps-mir-2528-1 (-36.10)   [dps-miR-2528:24-47]

    aa     cgua    -u   UUU    U   -   C     --U            u 
acgg  uuuua    uuca  ccg   UGUC GUA UCG GAAGU   UGGagucguuuu g
||||  |||||    ||||  |||   |||| ||| ||| |||||   ||||||||||||  
ugcc  agaau    aagu  ggu   auag cgu agu uuuua   accuuagcgaag u
    gg     --aa    uc   uuu    u   g   u     cgc            u 

>dps-mir-2529 (-57.20)   [dps-miR-2529:16-37]

-   g       -g   A      G           A   a         ua      
 gcc guuuugg  caa AUUAUC UGUCACUCAUU UUc acgcauuuu  cuucg 
 ||| |||||||  ||| |||||| ||||||||||| ||| |||||||||  |||| g
 cgg cgaagcu  guu uaauag acaguggguga aag ugcguaaaa  gaagg 
a   g       ag   g      g           a   a         cg      

>dps-mir-2530 (-20.80)   [dps-miR-2530:15-37]

g   aa     -uaaUA   CU  AA    -    GG      ccaag 
 acu  gcuca      UUU  GG  GUUA CAGU  GCauau     c
 |||  |||||      |||  ||  |||| ||||  ||||||      
 uga  ugagu      aaa  cc  caau gucg  uguaua     c
-   ac     uuuccg   uu  -g    u    ag      aaucg 

>dps-mir-2531 (-51.00)   [dps-miR-2531:77-100]

  -    uuucc     -cuu  uaa    gc u       ggc       c    ----  uu 
uc cugg     acggc    cg   cggg  c ggccggu   gugaucc augc    cc  a
|| ||||     |||||    ||   ||||  | |||||||   ||||||| ||||    ||   
ag gauc     ugccg    GC   GCCC  G CCGGCCG   CACUagg ugcg    gg  u
  u    -----     cucU  --C    UA C       --U       c    uacu  uu 

>dps-mir-2532 (-58.70)   [dps-miR-2532:65-88]

a      uuc     u   a         -       gua   u  ug --u      
 ggauuu   ccagc ccg gagguucuc gaggcag   gcc cc  g   gggcc 
 ||||||   ||||| ||| ||||||||| |||||||   ||| ||  |   |||| u
 ccuggg   ggucg ggc cuuCAAGGG CUCCGUU   CGG GG  u   cucgu 
-      -uc     -   c         U       -UG   C  GU cuu      

>dps-mir-2533 (-54.30)   [dps-miR-2533:23-45]

c  ---ga   ug       u   cUU     AGU    C       C    uc ucg 
 gc     ugu  gcuggag guu   CUGGC   UGGC GGCCCAU uucg  c   c
 ||     |||  ||||||| |||   |||||   |||| ||||||| ||||  |    
 cg     gcg  ugaccuc cgg   gaccg   gcug ccgggua gagc  g   u
-  auuug   gu       -   cuc     -gu    c       u    cu cac 

>dps-mir-2534 (-65.50)   [dps-miR-2534:77-98]

  c    ac    c  g    auc   uu    ---u      u   u      g   -   uc 
gc ggcc  uccu cc cggg   gcc  ccag    ggcccg ggc gccggu cug agc  u
|| ||||  |||| || ||||   |||  ||||    |||||| ||| |||||| ||| |||   
cg ccgg  agga gg gccu   cGG  GGUC    CUGGGU UCG CGgccg gac ucg  g
  u    --    c  -    ---   --    CGUU      -   C      g   g   cc 

>dps-mir-2535 (-29.50)   [dps-miR-2535*:32-54] [dps-miR-2535:77-102]

    a  uau c   cac    aucacaaag        ---C       C  C   auu  accu 
cuuc uc   c gug   guac         GUAAGUGG    UAUGCCG GA GGG   ga    c
|||| ||   | |||   ||||         ||||||||    ||||||| || |||   ||     
gaag ag   g cac   cauG         CGUUCACU    AUACGGC CU Ucc   cu    u
    -  -cc c   -ua    --------A        AACU       A  C   acu  cuac 

>dps-mir-2536 (-30.60)   [dps-miR-2536:29-50] [dps-miR-2536*:67-88]

-     -   u     a aacug   g  c  U     U   UU    C   u  gug 
 gugau uuc agaga g     gca ug AA ACGUU UUC  CGCA UGA gu   u
 ||||| ||| ||||| |     ||| || || ||||| |||  |||| ||| ||    
 cgcua gag ucuuu c     ugu aC UU UGCAA AAG  GCGU Acu ca   u
c     c   -     g ----g   g  A  U     U   UU    A   c  aau 

>dps-mir-2537 (-25.20)   [dps-miR-2537*:13-34] [dps-miR-2537:48-69]

-    uau ua     C      C  U    A   uucu 
 gauu   g  gcUAA GGACAA CG CUAU UUG    a
 ||||   |  ||||| |||||| || |||| |||    a
 cuag   c  CGAUU CCUGUU GC GAUA Aac    a
c    cgu gc     U      C  U    A   cuaa 

>dps-mir-2538 (-37.30)   [dps-miR-2538:28-49] [dps-miR-2538*:68-89]

-     -cu   uua     -       a     UG     A    AA      uauau 
 gaaca   guu   ugcgg uugaagu gUAGG  GAAGA CUAA  UAUUug     u
 |||||   |||   ||||| ||||||| |||||  ||||| ||||  ||||||      
 uuugu   cag   acgcu agcuuca CGUCC  CUUUU GAUU  AUaagu     u
a     ccc   -ca     u       A     GU     A    AA      uaacu 

>dps-mir-2522b (-23.70)   [dps-miR-2522b:24-46] [dps-miR-2522b*:62-82]

      ucuac   c aa   auUU CG       G     G    u  au 
guguuu     gau g  gua    C  GGAAUGC CUGUU UUGG gu  u
||||||     ||| |  |||    |  ||||||| ||||| |||| ||  c
uacgag     cua c  cau    G  UCUUACG GACGA GAcc ua  g
      --caa   c gc   cACU CU       A     -    u  aa 

>dps-mir-2539 (-45.19)   [dps-miR-2539:29-49] [dps-miR-2539*:65-86]

    guuuuccc     ug c   a              UU         -   a 
cacu        cugau  a ggu gugAAUGGUCAUGU  CUGUAUUGg ugu u
||||        |||||  | ||| ||||||||||||||  ||||||||| ||| u
guga        gacua  u uca cACUUAUUAGUACG  GACAUAAcc aua c
    aauuauac     gu -   a              CC         u   g 

>dps-mir-2540 (-31.54)   [dps-miR-2540*:26-48] [dps-miR-2540:65-86]

u  aua    aaau  uuu             C   A     U     uaauac 
 gu   uuuc    gu   uaguucUUCAGAU GCC GGUAU AUAUG      u
 ||   ||||    ||   ||||||||||||| ||| ||||| |||||       
 ca   aaag    ca   auuaAGAAGUCUA UGG CCAUA UGUgc      u
a  acg    acac  uuu             C   -     U     caaaaa 

>dps-mir-2541 (-32.30)   [dps-miR-2541*:26-48] [dps-miR-2541:62-83]

cg   --a  --gcu      gguac               C  A    U   gcu 
  agg   uc     gggaca     uuuUAUCGAAUGUUC AG CUUU AGu   a
  |||   ||     ||||||     ||||||||||||||| || |||| |||   u
  ucc   ag     ccuugu     aGAAUGGUUUACAGG UC GAAG ucg   c
ag   ccg  aaccu      --aua               C  -    U   uua 

>dps-mir-2542-1 (-28.10)   [dps-miR-2542:14-36] [dps-miR-2542*:52-74]

     u   u  g     U    -  GA        U  aau 
gggcu aua uu UAUUU UGCU CG  CAUUUAUG ac   u
||||| ||| || ||||| |||| ||  |||||||| ||   u
cccga uau aA AUAAA ACGA GU  GUAGAUac ug   g
     u   u  G     U    C  UG        -  cga 

>dps-mir-2517a-1 (-29.24)   [dps-miR-2517a*:23-45] [dps-miR-2517a:62-84]

-ccgggucaaauggucca              -      A C     uauuau 
                  gaguuUUCAGAUCC UCAAAU C AUAUG      u
                  |||||||||||||| |||||| | |||||       
                  uucAAAAGUUUAGG GGUUUA G UAUac      u
guucacaagaauucacuu              U      - U     uuucag 

>dps-mir-2543a-1 (-45.60)   [dps-miR-2543a*:25-46] [dps-miR-2543a:63-84]

-  ug -cag  ag      -     -------uA             G  U    u  aau 
 cc  c    ag  ggcuuu ugguu         UCCUAUCUGCUGU GU UAUG ac   u
 ||  |    ||  |||||| |||||         ||||||||||||| || |||| ||   c
 gg  g    uc  ccgaaa accga         AGGAUAGACGGCA CG AUac ug   g
a  gu ccua  aa      c     uuacuaACG             A  U    -  aaa 

>dps-mir-2542-2 (-28.10)   [dps-miR-2542:14-36] [dps-miR-2542*:52-74]

     u   u  g     U    -  GA        U  aau 
gggcu aua uu UAUUU UGCU CG  CAUUUAUG ac   u
||||| ||| || ||||| |||| ||  |||||||| ||   u
cccga uau aA AUAAA ACGA GU  GUAGAUac ug   g
     u   u  G     U    C  UG        -  cga 

>dps-mir-2517a-2 (-29.24)   [dps-miR-2517a*:23-45] [dps-miR-2517a:62-84]

-ccgggucaaauggucca              -      A C     uauuau 
                  gaguuUUCAGAUCC UCAAAU C AUAUG      u
                  |||||||||||||| |||||| | |||||       
                  uucAAAAGUUUAGG GGUUUA G UAUac      u
guucacaagaauucacuu              U      - U     uuucag 

>dps-mir-2543b-2 (-50.00)   [dps-miR-2543b*:25-46] [dps-miR-2543b:63-84]

-  ug -cag  ag      -     -------uA      G         U    uacaau  g 
 cc  c    ag  ggcuuu ugguu         UCCUAU UGCUGUGGC UAUG      uc a
 ||  |    ||  |||||| |||||         |||||| ||||||||| ||||      ||  
 gg  g    uc  ccgaaa accga         AGGAUA GCGGCACCG AUac      ag a
a  gu ccua  aa      c     uuacuaACG      G         U    ------  a 

>dps-mir-2542-3 (-28.10)   [dps-miR-2542:14-36] [dps-miR-2542*:52-74]

     u   u  g     U    -  GA        U  aau 
gggcu aua uu UAUUU UGCU CG  CAUUUAUG ac   u
||||| ||| || ||||| |||| ||  |||||||| ||   u
cccga uau aA AUAAA ACGA GU  GUAGAUac ug   g
     u   u  G     U    C  UG        -  caa 

>dps-mir-2544 (-25.70)   [dps-miR-2544*:29-50] [dps-miR-2544:69-90]

a     cuauacaaau   cu    c  U    GCU     C        cuu  uu 
 uuggu          ggu  auag uu CCUG   CUCGG UCUAUAUG   ug  u
 |||||          |||  |||| || ||||   ||||| ||||||||   ||   
 aacca          cca  uauu AA GGAC   GAGUC AGAUAUau   au  a
-     ----------   uu    a  U    AAC     A        cau  uu 

>dps-mir-2517a-4 (-33.14)   [dps-miR-2517a*:21-43] [dps-miR-2517a:60-82]

     ---aaa    cc               -      A C     uauuau 
gggug      uggu  agaguuUUCAGAUCC UCAAAU C AUAUG      u
|||||      ||||  ||||||||||||||| |||||| | |||||       
ccuac      acca  uuucAAAAGUUUAGG GGUUUA G UAUac      u
     auauac    cu               U      - U     uuucag 

>dps-mir-2543b-1 (-48.80)   [dps-miR-2543b*:25-46] [dps-miR-2543b:63-84]

-  ug -cag  ag      -     -------uA      G         U    u  aau 
 cc  c    ag  ggcuuu ugguu         UCCUAU UGCUGUGGC UAUG ac   u
 ||  |    ||  |||||| |||||         |||||| ||||||||| |||| ||   c
 gg  g    uc  ccgaaa accga         AGGAUA GCGGCACCG AUac ug   g
a  gu ccua  aa      c     uuacuaACG      G         U    -  aaa 

>dps-mir-2545a (-79.90)   [dps-miR-2545a:17-37] [dps-miR-2545a*:84-104]

        a              C       C        a      --auu    aua 
uccuccuc aggaggaAAUUCUU UACUGCG GAGGGcau gggcag     cuca   u
|||||||| |||||||||||||| ||||||| |||||||| ||||||     ||||    
aggaggag uccucCUUUAAGAA AUGACGC CUCccgua ccuguc     gggu   u
        c              C       A        g      gucuc    ccc 

>dps-mir-2546 (-28.90)   [dps-miR-2546*:12-34] [dps-miR-2546:57-77]

     ugaac     GUG  A    C   G   C   uu    g 
cacgg     gGUGA   GG GUCC AGA UUA ccg  uugg u
|||||     |||||   || |||| ||| ||| |||  |||| g
guguc     CCACU   CC CAGG UCU GAU ggc  aauc c
     -ugGA     ---  -    C   -   U   -u    a 

>dps-mir-2547 (-27.10)   [dps-miR-2547*:15-36] [dps-miR-2547:47-70]

-   -----        ca  U     UC   A  U  U     ca 
 gcc     gcgucuuu  gG GAGCA  CUU CA UU GUUcc  g
 |||     ||||||||  || |||||  ||| || || |||||   
 cgg     cguagagG  CC UUUGU  GAA GU AG CAAgg  u
a   uauau        -A  -     CC   C  U  U     ug 

>dps-mir-2548 (-50.20)   [dps-miR-2548*:22-41] [dps-miR-2548:62-83]

gaaa     ag            G    UUAA   U       a   caac 
    guugc  uccugccagcUG UGGA    CUG UGCCAaa gcu    u
    |||||  |||||||||||| ||||    ||| ||||||| |||    u
    cagcg  ggggcgguCGAC ACCU    GAC GUGGUUU cga    u
----     aa            G    --UC   U       -   aaaa 

>dps-mir-2549 (-37.90)   [dps-miR-2549*:39-60] [dps-miR-2549:74-94]

     g  ucuuacaa   c  cga   a     ggcgGU   U   -   UU       Uc   u 
ccgag ug        gcc gu   gga gcuga      AAG CAC UGA  UCUUUAG  gcc a
||||| ||        ||| ||   ||| |||||      ||| ||| |||  |||||||  ||| c
ggcuc ac        cgg ca   ccu cGACU      UUC GUG ACU  AGGAAUc  ugg u
     g  -----uac   u  --a   -     ------   -   U   -U       --   u 

>dps-mir-2550 (-36.84)   [dps-miR-2550*:30-51] [dps-miR-2550:67-88]

---     uccag   g        augacgg          AG  U   AUUUu c u 
   guucu     agc uggaagug       GUAAGGGAAG  GG GGU     c g u
   |||||     ||| ||||||||       ||||||||||  || |||     | | u
   cgagg     ucg gccuucac       CGUUUUCUUC  CC CCA     g c u
aca     -----   -        cagcgGA          CG  U   GUaau u g 

>dps-mir-2551 (-28.00)   [dps-miR-2551*:32-55] [dps-miR-2551:71-91]

g       --uu   c   ua   cgaaau   -          UG  UU       U   ua 
 aaggcuu    uca auu  ugg      ugu AAAAUCAAAU  GG  CUUUAUU gug  u
 |||||||    ||| |||  |||      ||| ||||||||||  ||  ||||||| |||   
 uuucgag    agu uaa  acc      acA UUUUAGUUUA  UC  GAAAUaa uau  u
a       cuac   u   --   -uaguu   C          GU  --       u   gu 

>dps-mir-2552 (-37.50)   [dps-miR-2552:24-45] [dps-miR-2552*:61-83]

     --    --------       a    u    -          A        -   gu 
guaua  uggu        uuuugga gaau gUGA GGUCAAAUUG ACGCAUUU cga  a
|||||  ||||        ||||||| |||| |||| |||||||||| |||||||| |||   
cgugu  accg        aaaaccu uuuA UACU CCGGUUUAAU UGUGUAaa guu  u
     aa    cuacgagu       a    -    A          A        c   gu 

>dps-mir-2553 (-27.95)   [dps-miR-2553:19-41] [dps-miR-2553*:63-85]

u   uac    --------         C    A   UC G        auacauaca 
 uug   acca        acauuugUG GUCU AGA  U UGCAGUAU         u
 |||   ||||        ||||||||| |||| |||  | ||||||||          
 aac   uggu        uguaaACAU CAGA UCU  A ACGUUAUa         a
a   uuc    cugucaag         -    C   UC G        aaacauaag 

>dps-mir-2554 (-23.01)   [dps-miR-2554:38-60] [dps-miR-2554*:77-98]

      ucaucaacuaaaauucau    uau     gU   C   U     C      C  uuguu 
cugaga                  ccuu   uauuu  AGG CAG GAUUU ACAGUA Gu     u
||||||                  ||||   |||||  ||| ||| ||||| |||||| ||      
gacuuu                  ggaa   auaaa  UCC GUC CUAGA UGUUAU ca     u
      -----------------c    cuu     AC   U   U     C      a  ucuuc 

>dps-mir-2507b (-25.10)   [dps-miR-2507b:29-51] [dps-miR-2507b*:66-87]

a       gaua  c   --   a  --    U      A  UC   UU       ucuc 
 gugcugu    ag uga  caa ca  uuua AGGCAA AA  AGU  CAAUAUu    u
 |||||||    || |||  ||| ||  |||| |||||| ||  |||  |||||||    u
 cacgaua    uc gcu  guu gu  aaaU UCCGUU UU  UCA  GUUAUaa    u
-       aaaa  u   cc   a  uu    C      C  UU   -C       uuaa 

>dps-mir-2555 (-14.94)   [dps-miR-2555*:1-27] [dps-miR-2555:41-62]

--   AG    A     U  UUU    GUucuu 
  GUG  UGUU UACAG CA   UGGG      u
  |||  |||| ||||| ||   ||||       
  CAC  ACAA AUGUC GU   ACUc      u
GA   -A    -     U  --U    aaaucg 

>dps-mir-2556 (-38.70)   [dps-miR-2556*:30-54] [dps-miR-2556:64-84]

-      cauc  ug  -g  g -         UAU  C     UUC     CGACU 
 uagagg    gu  gc  gu c cuguaaguG   GC GGAGG   ACUAG     u
 ||||||    ||  ||  || | |||||||||   || |||||   |||||      
 auuucc    ca  cg  ca g GACAUUCAC   CG CCUCU   UGAuc     u
g      --ac  gu  aa  g c         -UU  -     ---     uaaau 

>dps-mir-2557 (-24.80)   [dps-miR-2557*:21-47] [dps-miR-2557:60-82]

  u    -c    ucacacagGU      U  C       ACUU     gca 
gg gacc  gcuu          AUGCUG AG AAGGAUC    UGAGg   g
|| ||||  ||||          |||||| || |||||||    |||||   u
uc cugg  ugGA          UACGGC UU UUCCUAG    ACUuc   c
  -    uu    ---------U      C  U       ----     acc 

>dps-mir-2558-1 (-22.30)   [dps-miR-2558:10-31] [dps-miR-2558*:57-77]

u ug   -ag        CC        -  AUua   uu    u 
 a  guu   GUAGGUAC  AAAUAUCU UG    uaa  uucc u
 |  |||   ||||||||  |||||||| ||    |||  ||||  
 u  uaa   CAUCCAUG  UUUAUAGA ac    auu  aagg u
- gu   gGA        UC        C  ----   -c    a 

>dps-mir-2558-2 (-25.80)   [dps-miR-2558:14-35] [dps-miR-2558*:61-81]

u     ----u    ag        CC        ---   Uuauaauu    a 
 ccaug     gguu  GUAGGUAC  AAAUAUCU   UGA        uucc u
 |||||     ||||  ||||||||  ||||||||   |||        ||||  
 gguau     ccgG  CAUCCAUG  UUUAUAGA   acu        aagg u
-     cuguu    -A        UC        Cac   -------c    a 

>dps-mir-2559 (-29.70)   [dps-miR-2559*:18-42] [dps-miR-2559:75-97]

   ug     a  agag   U U    UAC    UUUA      aaa  aa -   u 
cag  gcugg ca    GUG G GGGA   UGAU    GAGAaa   aa  c cau a
|||  ||||| ||    ||| | ||||   ||||    ||||||   ||  | |||  
guc  uggcc gU    CAC C CCCU   ACUA    CUcuuu   uu  g gug a
   cg     c  --GA   U -    UUU    --CA      -gc  cg a   c 

>dps-mir-2560 (-39.01)   [dps-miR-2560:24-45] [dps-miR-2560*:62-84]

-     -------------  a     uuca    -gcU                   GUaa   c 
 gcaau             ac uugcu    gagg    CGCUCAUCGUUAUUUGAUA    ucg a
 |||||             || |||||    ||||    |||||||||||||||||||    |||  
 uguua             ug aacgg    cucc    GCGGGUAGUAAUGAACUGU    agu c
g     caauaacucaaac  g     --cc    AUAU                   auaa   c 

>dps-mir-2561 (-32.20)   [dps-miR-2561:21-43] [dps-miR-2561*:61-82]

uga        --      g   -      U  U     GA    ---     a 
   ucguuuuu  ucguuu ugU GUUUUU CC UCUGU  GUUU   Uaugu u
   ||||||||  |||||| ||| |||||| || |||||  ||||   |||||  
   aguaaaag  ggcaaa aCG CAAAGA GG AGACG  CAAa   guacg u
acg        ac      g   G      C  C     -A    acu     u 

>dps-mir-2562 (-16.00)   [dps-miR-2562*:1-20] [dps-miR-2562:41-64]

--         --U     -UAUU   c  -  u 
  GCAAGUCAA   AAGAU     Cca au ca u
  |||||||||   |||||     ||| || ||  
  CGUUUAGUU   UUCUA     ggu ua gu a
GA         CAC     CAAUU   a  u  u 

>dps-mir-2563 (-32.29)   [dps-miR-2563:23-45] [dps-miR-2563*:68-89]

-   g --g    ug         cU   U   G  -UC    U       uggaaua 
 ugu c   ggug  ugcuauauu  GAG AUU CC   CUGU GUAGUug       u
 ||| |   ||||  |||||||||  ||| ||| ||   |||| |||||||        
 aca g   ucac  acgguauaA  CUC UAA GG   GGCA UAUcaac       u
a   - aaa    cg         AU   C   -  CUU    -       uauaaag 

>dps-mir-2564 (-24.20)   [dps-miR-2564*:31-53] [dps-miR-2564:65-88]

ga    uauaaa     aaacaa   u  -             --    U       uu 
  aguu      accag      auu ug uGUAAAUGUGAUA  AUUG UUGUAAg  u
  ||||      |||||      ||| || |||||||||||||  |||| |||||||   
  ucga      ugguc      uaa au AUAUUUGCAUUAU  UAAC AAUauuc  g
-c    ----uc     ---gag   u  G             UC    U       cc 

>dps-mir-2565 (-24.20)   [dps-miR-2565*:18-39] [dps-miR-2565:72-91]

agcu     caaa g  -G     U   UU      C   aa     uau    c 
    gcgac    u ag  UGAAA UUA  UAUAGG AGA  auauu   uccg u
    |||||    | ||  ||||| |||  |||||| |||  |||||   |||| c
    ugcug    g uc  ACUUU AGU  AUGUCC Ucu  uauaa   aggu g
---u     ---c g  aG     U   CU      U   -c     --u    a 

>dps-mir-2566a-1 (-28.40)   [dps-miR-2566a-1*:14-35] [dps-miR-2566a:50-72]

-   ug       -  UU   A      AGC       -  au 
 auu  cauuugg cU  AGA ACACAA   AUGUGUg gu  u
 |||  ||||||| ||  ||| ||||||   ||||||| ||   
 uga  guaaacU GA  UCU UGUGUU   UACAUac ca  u
a   gu       A  -U   C      CAA       u  au 

>dps-mir-2567a (-27.40)   [dps-miR-2567a*:14-35] [dps-miR-2567a:50-71]

-      -  -uuu  A          U   C  A   uugaa 
 uuuuca gu    uu CCAGGUUAGA UUG GA ACG     u
 |||||| ||    || |||||||||| ||| || |||      
 aaaagu cg    AA GGUCCGAUCU AAC CU Ugc     u
a      u  uuuu  C          U   A  A   uggau 

>dps-mir-2566a-2 (-22.90)   [dps-miR-2566a-2*:15-36] [dps-miR-2566a:53-75]

a   ug     ca     -  A      A C       -  aug 
 auu  cauuu  aUUUA GA ACACAA U AUGUGUg gu   u
 |||  |||||  ||||| || |||||| | ||||||| ||    
 uga  guaaa  UAGAU CU UGUGUU A UACAUac ca   u
-   gu     -c     U  C      C A       u  auu 

>dps-mir-2567c (-29.94)   [dps-miR-2567c*:23-45] [dps-miR-2567c:62-83]

-   accaaau        -u   A    UG    UU     A   Uugc   u 
 gua       uucaaguu  cuu CCAG  UGGA  UGUAA ACG    guu u
 |||       ||||||||  ||| ||||  ||||  ||||| |||    |||  
 cgu       aaguucga  gAA GGUC  ACCU  ACGUU Ugc    caa u
g   ccacuac        uu   C    UA    UU     A   ---u   a 

>dps-mir-2566b (-34.60)   [dps-miR-2566b*:14-35] [dps-miR-2566b:50-71]

-   ug       c             A C       -  au 
 auu  cauuugg UUUAGAAACACAA G AUGUGUg gu  u
 |||  ||||||| ||||||||||||| | ||||||| ||   
 uga  guaaacU AGAUCUUUGUGUU U UACAUac ca  u
a   gu       -             C A       u  ac 

>dps-mir-2567b (-26.70)   [dps-miR-2567b*:14-35] [dps-miR-2567b:50-71]

-      -  -uuu  A          U   C  A   uugaa 
 uuuuca gu    uu CCAGGUUAGA UUG GA ACG     u
 |||||| ||    || |||||||||| ||| || |||      
 aagagu cg    AA GGUCCAAUCU GAC CU Ugc     u
a      u  uuuu  C          C   A  C   ucgau 

>dps-mir-2568a (-40.70)   [dps-miR-2568a:15-35] [dps-miR-2568a*:55-74]

-      c     -      ACU      G       -ggg   c 
 ggaggu uauca gaGCAA   UCCUCG GUCGUUG    uuc u
 |||||| ||||| ||||||   |||||| |||||||    |||  
 ccuuua guagu UUCGUU   AGGAGC CGGCAac    aag u
a      c     a      -GU      A       agaa   c 

>dps-mir-2569 (-34.10)   [dps-miR-2569:15-34] [dps-miR-2569*:55-75]

-    --g  -cu      UC   G     G        ggauc    g 
 uguu   ga   ccaguA  GUU CUCGG UCGUUGUu     uauu a
 ||||   ||   ||||||  ||| ||||| ||||||||     ||||  
 acaa   cu   gguCAU  UAA GAGCC AGCAACaa     auga a
a    aaa  cac      UU   G     A        -----    a 

>dps-mir-2568b (-46.60)   [dps-miR-2568b:27-47] [dps-miR-2568b*:68-87]

g    uu     ---------g     cc     -c    ACU              cu  acuu 
 guuu  cgucg          gaguu  aucgc  GCAA   UCCUCGGGUCAUGG  gu    u
 ||||  |||||          |||||  |||||  ||||   ||||||||||||||  ||    u
 uaag  guagc          cucga  uagug  CGUU   AGGAGCCCGGUAcc  ca    u
a    -u     aaaacuaaaa     cc     UC    -GU              -c  aaac 

>dps-mir-2570 (-29.40)   [dps-miR-2570:22-45] [dps-miR-2570*:55-76]

------  g        gu      ---g     -      C  G   UGU    ca 
      gc ucuugcau  gggaca    gUAGU AUGGGU UU ACA   GACU  a
      || ||||||||  ||||||    ||||| |||||| || |||   ||||  u
      cg aggaugua  uuuugu    CGUCG UGCUCA AA UGU   UUga  a
cgaagc  -        ac      uucA     G      -  G   --U    ac 

>dps-mir-2571 (-19.76)   [dps-miR-2571*:3-27] [dps-miR-2571:49-72]

       --U   G U       AA      gauaug 
auGUGAG   GGU A GAUGAUC  UAUUgg      c
|||||||   ||| | |||||||  ||||||      u
UACACUC   UCA U CUAUUGG  AUaauc      u
       UAU   G -       --      agucuu 

>dps-mir-2572 (-25.70)   [dps-miR-2572*:14-35] [dps-miR-2572:58-82]

-      aauu   GUA         UC   C     a  -  gcuc 
 gcgcug    uaa   AGCAAGAGA  GAU CAUUa ga ga    c
 ||||||    |||   |||||||||  ||| ||||| || ||    u
 ugugac    aUU   UUGUUCUCU  CUA GUAAU cu cu    u
a      ----   -AG         UC   U     C  a  acaa 

>dps-mir-2573 (-28.60)   [dps-miR-2573*:19-39] [dps-miR-2573:47-70]

a     ccgc c   c  C   -G        A  GA       
 gaguu    g gcu uc GGA  CCGUUAUG GA  AGAuuu 
 |||||    | ||| || |||  |||||||| ||  ||||| c
 cucaa    c cga AG CCU  GGCAAUAC CU  UCUagc 
a     ---- -   -  C   GA        C  AC       

>dps-mir-2574a (-52.70)   [dps-miR-2574a:33-55] [dps-miR-2574a*:69-90]

ugugaaucuuucuuccagguucuu           A                    aua 
                        ccaauuucUGG CUCUCCAUUUUGUAUUGCGu   c
                        ||||||||||| ||||||||||||||||||||   a
                        gguuaaaGACC GAGAGGUAAAACAUAACgca   a
--------acaauugaauaauggu           A                    aac 

>dps-mir-2543a-2 (-45.60)   [dps-miR-2543a*:25-46] [dps-miR-2543a:63-84]

-  ug -cag  ag      -     -------uA             G  U    u  aau 
 cc  c    ag  ggcuuu ugguu         UCCUAUCUGCUGU GU UAUG ac   u
 ||  |    ||  |||||| |||||         ||||||||||||| || |||| ||   c
 gg  g    uc  ccgaaa accga         AGGAUAGACGGCA CG AUac ug   g
a  gu ccua  aa      c     uuacuaACG             A  U    -  aaa 

>dps-mir-2517a-3 (-29.24)   [dps-miR-2517a*:23-45] [dps-miR-2517a:62-84]

-ccgggucaaauggucca              -      A C     uauuau 
                  gaguuUUCAGAUCC UCAAAU C AUAUG      u
                  |||||||||||||| |||||| | |||||       
                  uucAAAAGUUUAGG GGUUUA G UAUac      u
guucacaagaauucacuu              U      - U     uuucag 

>dps-mir-2575 (-41.30)   [dps-miR-2575:24-44] [dps-miR-2575*:63-83]

-----------------ccaaaccguc    u    uu  U            GU    -----U   uc 
                           ugcg gugc  cu UUGUUACUGAUG  GCUG      Cgg  c
                           |||| ||||  || ||||||||||||  ||||      |||  a
                           acgc cacg  GA AACGGUGACUAC  CGAC      gcu  u
gguaugagcaagaagacccccaaccca    -    cc  C            UG    cgaauu   ua 

>dps-mir-2576-1 (-71.60)   [dps-miR-2576:15-36]

c        - gu         --     -   C        u   -    acau   a    ca 
 ggcgaucg g  cuCUCGAGU  GUGGA GAG AUGGGAgu ggc ggac    gag guuc  c
 |||||||| |  |||||||||  ||||| ||| |||||||| ||| ||||    ||| ||||   
 cugcuagc c  gagagcucg  cgccu cuc uacucuca ccg ccug    cuc caag  c
-        g ug         cc     a   -        c   a    ----   -    ua 

>dps-mir-2576-2 (-69.60)   [dps-miR-2576:15-36]

c        - gu         --     -   C        u   --    acau   u    ca 
 ggcgaucg g  cuCUCGAGU  GUGGA GAG AUGGGAgu ggc  ggac    gag guuc  c
 |||||||| |  |||||||||  ||||| ||| |||||||| |||  ||||    ||| ||||   
 cugcuagc c  gagagcucg  cgccu cuc uacucuca ccg  ccug    cuc caag  c
-        g ug         cc     a   -        -   ga    ----   -    ua 

>dsi-mir-977 (-36.00)   [dsi-miR-977:72-92]

agugccgaaaaugcaucc    g               uc       a  uuu    uguu 
                  caag uaugguuuagauaac  gaauauc ca   ucag    c
                  |||| |||||||||||||||  ||||||| ||   ||||     
                  guuu guaccaAAUCUGUUG  CUUAUAG GU   aguc    g
------ucaaaaguuuuu    g               CA       A  ---    uaua 

>dsi-mir-978 (-37.60)   [dsi-miR-978:52-73]

-   ---      u       c    c      cu    -  g g 
 gcg   gcacaa cugcaau uacg cacugg  uacg uu u g
 |||   |||||| ||||||| |||| ||||||  |||| || | u
 cgc   uguguu GACGUUA AUGC GUGACC  GUgc aa a c
a   agg      -       U    C      -U    u  g g 

>dsi-mir-1012 (-26.00)   [dsi-miR-1012:21-42] [dsi-miR-1012*:56-78]

gccacuaauccaaaagaacg     U    -              gc 
                    GUGGG AGAA CUUUGAUUAAUAuu  u
                    ||||| |||| ||||||||||||||  u
                    UACCC UUUU GAAACUGAUUauaa  g
--cgguuuuaacuauuuaGA     C    A              ga 

>dsi-mir-1003 (-31.70)   [dsi-miR-1003*:21-42] [dsi-miR-1003:55-76]

   -  gaa  u    agaag        C         UU  cu u 
gca cu   gc gcgc     GUGGGUAU UGGAUGUGG  GG  c g
||| ||   || ||||     |||||||| |||||||||  ||  |  
cgu ga   ug cgcg     CACUUAUA AUUUACACU  cc  g g
   c  --g  c    ---GA        C         CU  ug c 

>dsi-mir-991 (-25.22)   [dsi-miR-991*:36-58] [dsi-miR-991:75-96]

    aua     aauaucac     uu     c      C    A  U  A       uuauu 
gggu   ucaaa        ugcag  ucagg uuUUCC AACU CA CU UUAAUAU     u
||||   |||||        |||||  ||||| |||||| |||| || || |||||||     u
ccua   aguuu        acguu  gguuu AAAAGG UUGA GU GA AAUUaug     a
    --a     --------     uu     U      U    A  U  -       cugca 

>dsi-mir-986 (-36.92)   [dsi-miR-986:29-50] [dsi-miR-986*:75-96]

a   aga  acaca  ug    u   caU  C       G    GA     guaacug    
 cgc   gg     cc  aaau acc   CU GAAUAGC UUGU  CUGAg       cgc 
 |||   ||     ||  |||| |||   || ||||||| ||||  |||||       || a
 gcg   cc     gg  uuug ugg   GA CUUAUCG AGCG  GAcuc       gcu 
-   --a  -----  gu    u   AAU  A       G    GC     -aucuaa    

>dsi-mir-987-1 (-29.20)   [dsi-miR-987:13-37] [dsi-miR-987*:56-77]

- ug      gu  A        A     GAU       ag  gc 
 u  gacugu  uU AAGUAAAU GUCUG   UGAUGAa  uu  a
 |  ||||||  || |||||||| |||||   |||||||  ||  u
 a  uugacg  AA UUCAUUUA CGGAC   ACUACuu  ga  u
a gu      uc  C        -     --A       aa  gc 

>dsi-mir-988 (-32.00)   [dsi-miR-988*:26-48] [dsi-miR-988:62-83]

g  g  --g   --- -    -      g      U A          ---A     Aug 
 au gc   gua   c cggg cauuuu gguGUG G UUUGUAGCAA    GUGAU   u
 || ||   |||   | |||| |||||| |||||| | ||||||||||    |||||   a
 ua ug   cau   g gucu guagaa cCGCAC C AAACGUUGUU    uacua   u
-  g  aca   aaa a    a      a      U C          CCCC     guu 

>dsi-mir-967 (-46.40)   [dsi-miR-967:15-35] [dsi-miR-967*:69-91]

    cuu      c          --C          c  ------ga    ac 
gaga   ggagag AGAGAUACCU   CGGAGAAGCG gu        ccug  c
||||   |||||| ||||||||||   |||||||||| ||        ||||  c
cucu   ucucUC UCUCUGUGGA   GCCUUUUCgc ca        ggac  c
    --c      -          UCC          c  acccaaga    ga 

>dsi-mir-1002 (-23.02)   [dsi-miR-1002:24-47] [dsi-miR-1002*:64-86]

    a   uua       ua  u        UGG      AAG     uugau 
ggaa uau   gaaauua  ua UUAAGUAG   AUACAA   GCGAu     a
|||| |||   |||||||  || ||||||||   ||||||   |||||     u
ccuu aug   uuuuagu  aU AAUUCAUC   UAUGUU   CGCua     a
    -   ---       cg  C        CGG      --A     ugaaa 

>dsi-mir-968 (-29.69)   [dsi-miR-968:20-43] [dsi-miR-968*:62-83]

-   uuca  ga  c     U        UC       G     uucucaa 
 uug    ug  ag uuccu AAGUAGUA  CAUUAAA GGUUG       c
 |||    ||  || ||||| ||||||||  ||||||| |||||        
 aac    ac  uc aagGA UUCAUCAU  GUAGUUU CCAac       a
a   --ug  -a  u     U        --       G     uaaacgu 

>dsi-mir-1006 (-29.80)   [dsi-miR-1006*:23-48] [dsi-miR-1006:64-86]

      ccg   caacuu  ag      UU         AUGCG        u 
gucgac   ggu      cc  GUGAGU  GAAAUUGAA     UAAAuugu u
||||||   |||      ||  ||||||  |||||||||     |||||||| g
uaguug   cca      gG  UACUUA  CUUUAGCUU     AUuuaaca g
      --a   uaacgu  -A      UU         ---AA        u 

>dsi-mir-958 (-31.60)   [dsi-miR-958:17-39] [dsi-miR-958*:59-80]

-   c    cu    c           C   CUUA     u  ucaau 
 cgg gugu  uugg aAGUAGAAUAG AGG    UCACA gu     u
 ||| ||||  |||| ||||||||||| |||    ||||| ||      
 gcc caca  agcU UUCAUCUUAUC UCU    AGUgu cg     c
u   -    ac    -           U   -UAG     -  ucuaa 

>dsi-mir-955 (-34.60)   [dsi-miR-955:25-47] [dsi-miR-955*:66-87]

     ---   ---gcc   ua    a   C              U      Ccugu uu 
ucuuu   uug      agc  auca cuc AUCGUGCAGAGGUU GAGUGU     g  u
|||||   |||      |||  |||| ||| |||||||||||||| ||||||     |   
agaaa   aac      ucg  uggu gAG UGGCACGUCUUUAA CUUACg     c  u
     ucc   aaagau   ca    a   A              -      cuaau cg 

>dsi-mir-190 (-34.10)   [dsi-miR-190*:14-37] [dsi-miR-190:55-77]

-  u   uc      -            AU      U  uau auu 
 ga ggu  cagugA GAUAUGUUUGAU  UCUUGG UG   c   c
 || |||  |||||| ||||||||||||  |||||| ||   |    
 cu cca  gucAUU UUAUACAAACUA  AGGACC ac   g   a
g  c   gu      A            --      C  -uu aaa 

>dsi-mir-193 (-33.52)   [dsi-miR-193*:23-44] [dsi-miR-193:76-97]

  g    -----   c c       g         UU   AU   C  -----------U   u   a 
cc ugug     ugc c cauuaug uUGGGAUUU  UAG  CAG AG            uau gcu u
|| ||||     ||| | ||||||| |||||||||  |||  ||| ||            ||| |||  
gg acac     aug g guaauaC AACCCUGAA  AUC  GUC Uc            aua cga a
  -    caaaa   a a       -         UC   CG   A  uucuaaauauuu   c   u 

>dsi-mir-995 (-51.10)   [dsi-miR-995*:32-54] [dsi-miR-995:71-91]

  g     a  uc uuca        c  c    C           GA      -c guu 
ag aagaa ug  g    ccuguacc cg aGCC GAAUUAUGUGG  GCUGCG  c   u
|| ||||| ||  |    |||||||| || |||| |||||||||||  ||||||  |   c
uc uuuuu gc  c    ggacgugg gc UCGG CUUAGUACACC  CGAUgc  g   c
  g     g  ua uaua        u  U    -           -A      cu aaa 

>dsi-mir-999 (-38.90)   [dsi-miR-999*:22-44] [dsi-miR-999:60-81]

  a  cc   --        cc         G      G       u  au 
gg ug  gcu  caauuacc  gACAUAGUC UACGGU AAUGUUG gu  u
|| ||  |||  ||||||||  ||||||||| |||||| ||||||| ||  g
cc ac  cga  guuggugg  CUGUGUCAG AUGUCA UUGUaac ca  g
  g  -c   cc        cU         A      A       -  ga 

>dsi-mir-1000 (-43.37)   [dsi-miR-1000:26-47] [dsi-miR-1000*:71-92]

-    ----gaaaucg       gc  u  A  U       U A        uuguuac       
 ccgu           gacgcuu  ca ug UA UGUCCUG C CAGCAGUA       acuaua 
 ||||           |||||||  || || || ||||||| | ||||||||       ||||| u
 ggcg           cugcgag  gu AC AU ACGGGGC G GUCGUCau       ugauau 
c    agcaacgauua       uu  u  A  U       U G        ------u       

>dsi-mir-929 (-56.30)   [dsi-miR-929:35-56] [dsi-miR-929*:70-90]

-  -   gcaugg   aaccag    gg  a       A        AG         -   u 
 cc cug      cgc      uccu  ug agcucAA UUGACUCU  UAGGGAGUC cuu a
 || |||      |||      ||||  || ||||||| ||||||||  ||||||||| |||  
 gg gac      gcg      agga  ac ucgaGUU GACUGAGG  AUCCCUCag gag a
a  a   aacaga   ------    -a  a       A        CA         c   u 

>dsi-mir-993 (-44.39)   [dsi-miR-993*:11-34] [dsi-miR-993:81-103]

-  -   -    cC    C     UUC          ----uuuaaa     -      g 
 cu ccc guga  UACC UGUAG   CGGGCUUUUG          uggcg uucggc c
 || ||| ||||  |||| |||||   ||||||||||          ||||| |||||| a
 ga ggg cacU  AUGG ACAUC   GCUCGAAGac          gucgu aggcug u
a  u   a    CU    -     UCU          uauuagcucg     u      u 

>dsi-mir-1010 (-37.10)   [dsi-miR-1010*:26-46] [dsi-miR-1010:76-99]

-   ca    --ua     -   caacgg        ---U    A        auuua       u 
 aca  uccg    uucgu gcu      GUAAGUGG    GUAG UGAAACAa     ccaacaa a
 |||  ||||    ||||| |||      ||||||||    |||| ||||||||     ||||||| u
 ugu  aggu    gagca cGA      CGUUUACC    UAUC ACUUUguu     gguuguu u
u   ca    ccag     u   ------        UUGC    C        ----a       u 

>dsi-mir-252 (-36.50)   [dsi-miR-252:30-51] [dsi-miR-252*:74-96]

u  gcc  cu   ua  aaguuc     cC        A U  C       uuag   -  u 
 gu   gu  acu  cc      gcuuu  UAAGUACU G GC GCAGGAG    guu cg g
 ||   ||  |||  ||      |||||  |||||||| | || |||||||    ||| ||  
 cg   cg  uga  gg      cgaaA  AUUCGUGA C CG CGUCCUc    uaa gc u
a  acc  -u   gc  ------     UU        A C  U       --ca   c  c 

>dsi-mir-1005 (-32.25)   [dsi-miR-1005*:32-53] [dsi-miR-1005:71-91]

-      gc  -    gccuaccauucu  c           UC      -  --GUU    g 
 uucacg  ca ugau            ga cuGUGAGUUGA  GAUUUC GA     uuug c
 ||||||  || ||||            || |||||||||||  |||||| ||     ||||  
 gagugc  gu acug            cu GACGCUUAAUU  CUAAGG CU     aaac c
g      uu  g    --uaaagccacc  u           -U      U  aauau    a 

>dsi-mir-961 (-36.80)   [dsi-miR-961:29-50] [dsi-miR-961*:66-87]

u   cucg   uca    c      a        CA    U            uu 
 gug    uua   uggg cgaguu ccUUUGAU  UCAG AAGUGAGAUugu  c
 |||    |||   |||| |||||| ||||||||  |||| ||||||||||||  u
 cau    agu   gcuc gcucaa GGAAACUA  GGUC UUUGCUUuagca  g
a   -cua   uca    a      -        AC    U            ua 

>dsi-mir-965 (-34.53)   [dsi-miR-965:15-37] [dsi-miR-965*:57-78]

-    -   a          U   A         A    ugcccuu 
 gcuc aac uuuuggGGGG GAA CUGUACGUU UAUG       c
 |||| ||| |||||||||| ||| ||||||||| ||||       u
 cgag uug aaaaUUCCCC UUU GAUAUGCGA AUac       g
u    a   -          U   C         -    uuaaagu 

>dsi-mir-963 (-28.10)   [dsi-miR-963:30-53] [dsi-miR-963*:68-89]

     -cu   uuu   -a        uaaaAC      A   U     U     cugua 
uacua   gau   cuu  gucuaauc      AAGGUA AUA CAGGU GUUUC     u
|||||   |||   |||  ||||||||      |||||| ||| ||||| |||||      
gugau   cua   gaa  cagguugg      UUCCAU UAU GUCUA CAAag     u
     cuu   cgu   aa        ccUAGU      A   -     -     cuaga 

>dsi-mir-964 (-28.82)   [dsi-miR-964:16-37] [dsi-miR-964*:56-77]

-      --   c   c          G  AGC        uguuu 
 uugguc  caa uug cUUAGAAUAG GG   UUAACUUg     u
 ||||||  ||| ||| |||||||||| ||   ||||||||     u
 aacuag  guu aaC GAAUCUUGUC CC   AAUUgaau     a
a      ua   u   A          A  GAA        uugua 

>dsi-mir-932 (-45.20)   [dsi-miR-932:21-43] [dsi-miR-932*:60-81]

a   auu    - ug     u    U          A        u  uu 
 ggu   gguu u  aaguu UCAA UCCGUAGUGC UUGCAGUg gu  a
 |||   |||| |  ||||| |||| |||||||||| |||||||| ||   
 cua   ccag a  uucaA GGUU AGGCGUCGCG AACGUcau ua  a
a   cuu    c gu     C    U          -        u  uu 

>dsi-mir-969 (-37.67)   [dsi-miR-969*:28-48] [dsi-miR-969:69-89]

    cccca   -c           uc       C  UAAG        gagaucgu 
gaau     agu  ucuguccuacg  cGAGUUC AC    CAAGUUUU        u
||||     |||  |||||||||||  ||||||| ||    ||||||||         
cuua     uca  agguagggugc  GCUCGAG UG    GUUCAAaa        u
    --acg   uc           uU       U  CACA        acaaaaau 

>dsi-mir-980 (-35.51)   [dsi-miR-980*:17-40] [dsi-miR-980:62-82]

a      -    ------    c          UU   GU       ucacuacu 
 aguuga uugu      augu AGUUUUUCAU  GGC  GGCUAGC        u
 |||||| ||||      |||| ||||||||||  |||  |||||||        u
 ucaacu gacg      ugca UCGGGAAGUG  CCG  UCGAUcg        u
-      u    uuaaug    U          UU   --       uuauaauu 

>dsi-mir-927 (-37.44)   [dsi-miR-927:17-38] [dsi-miR-927*:57-78]

-      g u    a            CU       A   uggcau 
 guggau c guag guUUUAGAAUUC  ACGCUUU CCg      a
 |||||| | |||| ||||||||||||  ||||||| |||       
 uaccua g uauc CAAAGUCUUAGG  UGCGAAA ggc      c
u      - c    c            UU       C   uuaaag 

>dsi-mir-981 (-39.99)   [dsi-miR-981*:27-48] [dsi-miR-981:69-89]

-   ag --auaaaca   u   u aagu          UA          -   uuaa 
 cuu  g         ucc cac g    CGGGUUUCGU  GCAGCGGGCU guu    u
 |||  |         ||| ||| |    ||||||||||  |||||||||| |||    a
 gaa  c         agg gug c    GUCCAAAGCA  UGUUGCUUga caa    a
g   cu gcaacuaaa   u   u guaC          GC          a   cuua 

>dsi-mir-970 (-35.00)   [dsi-miR-970*:29-52] [dsi-miR-970:73-93]

g    c   aucg a       u    c    A   G        UU      c ga uu 
 ugaa gua    u aggcauc guug AGCU GCG GUGUUUUA  UGGUAg u  a  g
 |||| |||    | ||||||| |||| |||| ||| ||||||||  |||||| |  |   
 acuu cgu    a ucuguag caaU UCGG CGC CACAGAAU  ACUauc a  u  a
-    -   ---a a       c    A    -   A        --      u ag uu 

>dsi-mir-375 (-37.09)   [dsi-miR-375*:30-53] [dsi-miR-375:70-91]

    ---c  aaucccuac      gc   --uu            G  AU       guga  a 
ccau    cg         cgggca  gaa    ACUUGGGCCAAG GA  GCAAACU    uc u
||||    ||         ||||||  |||    |||||||||||| ||  |||||||    || c
ggug    gc         gccugu  cuu    UGAAUUCGGUUU CU  UGUUUga    ag c
    cacc  --gaaauca      -a   uuAU            G  --       ---a  c 

>dsi-mir-992 (-25.76)   [dsi-miR-992*:13-33] [dsi-miR-992:51-72]

a      c   u  C              U   auuuuu 
 uuuucg aag GC UGGUUUCAGAGAGG GUA      g
 |||||| ||| || |||||||||||||| |||      u
 aagagu uUC CG ACCAAGGUUUUUUC Cau      u
a      -   C  A              C   gauaug 

>dsi-mir-137 (-33.70)   [dsi-miR-137*:27-49] [dsi-miR-137:65-86]

   g  guc  c      caa  gc -        G    U   U     --c  a 
gau gc   gc aaucuc   ug  c ACGUGUAU CUCG AGC AUAAC   ug a
||| ||   || ||||||   ||  | |||||||| |||| ||| |||||   || a
cua cg   ug uuagag   ac  G UGCACAUA GAGU UCG UAUug   ac u
   a  acu  u      -cc  uu A        A    -   U     uaa  c 

>dsi-mir-960 (-37.80)   [dsi-miR-960:20-43]

-       u      ca  c     A          C     UU  ug 
 cggguuu guacca  uu AGAGU UUCCAGGUUG AUAGC  ug  c
 ||||||| ||||||  || ||||| |||||||||| |||||  ||   
 gucuaaa uauggu  aa uuuca agggucuagc ugucg  au  u
a       c      ac  u     c          a     uu  ca 

>dsi-mir-962 (-35.50)   [dsi-miR-962:32-56]

u   ca   accu  au      cu    cuAU       A        UGUU    aca 
 cua  acu    cg  ggggcg  cagg    AAGGUAG GAAAUUGA    GUCu   c
 |||  |||    ||  ||||||  ||||    ||||||| ||||||||    ||||   u
 gau  uga    gu  ccccgu  guuu    uuccguu cuuugacu    caga   a
u   ag   caac  cc      uu    aacu       a        ---u    cuu 

>dsi-mir-989 (-17.30)   [dsi-miR-989:47-68]

----ugccgagauaa        --- ug    uuu      c 
               guuucauu   u  cguc   ugaauu g
               ||||||||   |  ||||   |||||| a
               CAAGGUGA   A  GUAG   acuuga a
acguuaaaguccauA        UGC GU    UGU      u 

>dsi-mir-957 (-30.20)   [dsi-miR-957:68-89]

-    -   ---    -    aua a     a    c    u    ug  gugcug    gu 
 guag ugu   uguc caca   g ccuua uuuu gacg guuu  gu      ggga  u
 |||| |||   |||| ||||   | ||||| |||| |||| ||||  ||      ||||   
 uauc acg   gcgg gugu   c GGAGU AAAA CUGC CAAA  ua      ccuu  c
c    u   agu    a    caa C     C    C    -    GU  -----g    au 

>dsi-mir-1013 (-31.90)   [dsi-miR-1013:65-87]

-  accaaa  c  -    -   ggagag        c   c    -a      a  a 
 gg      gc ca ccgu gcu      gugaguuu gua acuu  auuaau gg u
 ||      || || |||| |||      |||||||| ||| ||||  |||||| || c
 cc      cg gu ggca cgG      CGCUCAAG CGU UGAA  UAauug cc g
a  -acuag  c  a    g   -----A        C   A    AA      -  g 

>dsi-mir-1011 (-22.40)   [dsi-miR-1011:43-65]

-  a  ---   ---cac      -u          g    ua 
 ug cc   gug      gugagu  uuugagccag aaua  g
 || ||   |||      ||||||  |||||||||| ||||  u
 ac gg   cac      CGCUCG  AAACUUGGUU UUau  u
a  -  ucc   cuaaGA      CU          A    uc 

>dsi-mir-975 (-36.10)   [dsi-miR-975:30-52]

    -aag    a -au    -         u     -   G      UC      ---   u 
ucgg    ugca u   ugag uuuuugauu UAAAC ACU CCUACA  CUGUAU   gug u
||||    |||| |   |||| ||||||||| ||||| ||| ||||||  ||||||   ||| u
agcu    gcgu a   acuu agagacuga guuug uga ggaugu  gacaua   uac u
    agga    c gac    u         c     c   -      -u      gcc   g 

>dsi-mir-976 (-45.30)   [dsi-miR-976:56-77]

c   -        cg            g   auc        au  g 
 gca ugcagugu  uggcauugguga gac   uccaaugg  ug u
 ||| ||||||||  |||||||||||| |||   ||||||||  || u
 cgu acgucacg  gcCGUAACUACU UUG   AGGUUacu  ac c
-   c        ug            A   AUU        --  u 

>dsi-mir-978-as (-35.74)   [dsi-miR-978-as:53-74]

-   ucca     -       a    g      -ac   auucuc 
 gcg    cacaa cugcaau uacg cacugg   acg      g
 |||    ||||| ||||||| |||| ||||||   |||       
 cgc    guguu gACGUUA AUGC GUGACC   Ugc      a
c   ---c     a       G    G      GAA   aacacc 

>dsi-mir-iab-4-as (-42.00)   [dsi-miR-iab-4-as:22-43] [dsi-miR-iab-4-as*:59-81]

-  uug  c    u        UU            G    A  g  ua g 
 cg   cu gugc aucucgug  ACGUAUACUGAA GUAU CC ga  g a
 ||   || |||| ||||||||  |||||||||||| |||| || ||  |  
 gc   ga cacg uggagcAU  UGCAUAUGACUU CAUA GG cu  c u
c  uaa  -    c        -U            A    -  A  ca a 

>dsi-mir-1001 (-55.90)   [dsi-miR-1001:30-52] [dsi-miR-1001*:67-89]

-    ---   augau   -a        -    cU     AACU          A  uggag 
 gccc   gcg     gua  gcuggccu gucc  GGGUA    CCCAAGGAUC GG     a
 ||||   |||     |||  |||||||| ||||  |||||    |||||||||| ||      
 cggg   cgc     cgu  cgacugga cggG  CUCGU    GGGUUCCUAG cc     u
c    aag   ----c   ga        a    CU     CUUU          C  uaagu 

>dsi-mir-959 (-26.60)   [dsi-miR-959:57-78]

-     uu       - u        gg u        ac    uc 
 cuuug  cuauauu c uaguacuc  g ugauaaag  cuuu  u
 |||||  ||||||| | ||||||||  | ||||||||  ||||  u
 gaaau  gauauaA G AUUAUGGG  C ACUGUUuc  gagg  u
a     uu       A U        GG U        -c    cg 

>dsi-mir-2577 (-48.02)   [dsi-miR-2577:84-105]

-    u      a       g c       g  u  c   -------agu      g   a 
 cagu cgguuc uggggau g guugguc cu ga uug          guguaa ccg c
 |||| |||||| ||||||| | ||||||| || || |||          |||||| |||  
 guca gcuaAG ACCCCUA C UAGCCAG GA cu aac          cacauu ggu a
u    -      G       G C       -  c  u   auuuuaaccc      g   g 

>dsi-mir-2489 (-24.30)   [dsi-miR-2489:62-83]

-  a  aaguu    - ug    ug  u      au   - --      a 
 gc au     agac g  agua  gc auacaa  cau c  uggaac u
 || ||     |||| |  ||||  || ||||||  ||| |  ||||||  
 cg ua     uuUG C  UUAU  UG UAUGUU  gua g  aucuug a
a  a  -guau    A GU    GU  -      AU   c ua      c 

>dsi-mir-2578 (-10.60)   [dsi-miR-2578:5-26]

a   GU    C     CA        auu    u 
 gcg  AAGA AUUAA  UUGUUGAA   uaua u
 |||  |||| |||||  ||||||||   |||| a
 cgu  uucu uaauu  aauaacuu   auau g
-   --    a     ua        ---    u 

>dsi-mir-2579 (-22.71)   [dsi-miR-2579:10-29]

-    -ca     AAG   CC          gacugaau 
 acgc   aggGU   UGA  CAGUUGAGCG        c
 ||||   |||||   |||  ||||||||||        c
 ugcg   uuuca   gcu  guuagcucgc        g
a    acg     -gu   -a          agcguuaa 

>dsi-mir-982c (-21.52)   [dsi-miR-982c:66-87]

aguuaaaaaacgaaaucaugcgaga  uu         uca        auuau 
                         uc  ggacaaaua   aguagauu     u
                         ||  |||||||||   ||||||||     a
                         AG  CCUGUUUAU   UUAUUuaa     u
-----gucgacauuuuguuaauuCA  UU         -UG        cuaca 

>dsi-mir-982b (-27.50)   [dsi-miR-982b:63-84]

aguuaaaaaacaa      gcu  a        a      a    aa      u 
             aaucau   ag ucaagaac aauauc ugua  uugauu u
             ||||||   || |||||||| |||||| ||||  |||||| u
             uuggua   uc aGUUCUUG UUAUAG ACAU  AAcuaa u
-----ucgagauc      -au  g        C      C    -C      a 

>dsi-mir-982a (-21.42)   [dsi-miR-982a:19-42]

c        gcu  a   UU   A    U       A    Auuuu 
 gaaaucau   ag uca  AAC AGUA CAUGUAA UUGA     u
 ||||||||   || |||  ||| |||| ||||||| ||||     g
 uuuuggua   uc agu  uug uuau guacauu aacu     u
-        -au  a   uc   c    u       -    auaua 

>dsi-mir-303 (-25.00)   [dsi-miR-303:16-37]

-       c c   c    --  A   A             aau 
 augugau u uug uUUG  GC UUA AGGAAGCUAGUUu   u
 ||||||| | ||| ||||  || ||| |||||||||||||    
 uguacua a aac aaac  ug aau uccuuugaucaaa   a
g       c u   -    uu  c   c             agc 

>dsi-mir-2580 (-43.80)   [dsi-miR-2580:72-93]

  c     c   --a     a   ucac           c     g  auuuuuucgg   uc 
ag agcag agc   gcaac gca    acauacauaca acgcg gc          gcc  u
|| ||||| |||   ||||| |||    ||||||||||| ||||| ||          |||   
uc ucguu uug   cguuG CGU    UGUAUGUGUGU UGUGC cg          cgg  c
  u     u   aua     A   ----           C     g  ----------   uu 

>dsi-mir-2581 (-36.40)   [dsi-miR-2581:8-30]

   g  c                        - aag 
guu aa CGAAGACACUAGAAUAACUAGUUa c   u
||| || |||||||||||||||||||||||| |    
caa uu guuucugugaucuuguugaucaau g   u
   g  u                        u aua 

>dsi-mir-2582a (-28.04)   [dsi-miR-2582a:28-51] [dsi-miR-2582a*:63-83]

-   u    a  ------auua      a    cU   -C      C    U       -  u 
 uau auuc ug          ccauuc uauc  UCA  AGUGUU CUAA AGAUAGU ua u
 ||| |||| ||          |||||| ||||  |||  |||||| |||| ||||||| ||  
 aua uaag ac          gguagg auag  AGU  UCACAA GAUU UCUAUca au a
a   u    a  gucgcaauag      a    --   UU      C    -       c  u 

>dsi-mir-2494 (-39.80)   [dsi-miR-2494:21-42] [dsi-miR-2494*:70-92]

     -         c -a  --a       C  CAG          accuucaaaa 
caucu uccgaccgg g  uc   GUAAGUG AC   AUUGGGAAUa          g
||||| ||||||||| |  ||   ||||||| ||   ||||||||||          c
guggg agguugguc c  ag   CAUUCAC UG   UGACCCUuau          u
     u         c cg  GAA       C  UAA          aaauucaacg 

>dsi-mir-2582b (-29.60)   [dsi-miR-2582b*:14-35] [dsi-miR-2582b:49-70]

a    u      c G              U   C   -  u 
 ccau cauauc U GAGAGUGUUCUUAA AGU Ugu ua u
 |||| |||||| | |||||||||||||| ||| ||| ||  
 ggua guauaG A CUUUCAUAAGGGUU UCA Aca au a
-    -      - G              -   A   c  u 

>dsi-mir-983 (-40.60)   [dsi-miR-983:32-54] [dsi-miR-983*:68-90]

-     uu  -aua   uauc           uA         UU     A     uuuu 
 uugcu  gc    uga    uugcaguaauu  GUAAUACCU  CGAAC CAUGA    c
 |||||  ||    |||    |||||||||||  |||||||||  ||||| |||||    a
 ggcgg  cg    acu    aauguuauugA  UAUUAUGGA  GCUUG GUAcu    g
a     -u  cuca   uaca           UC         CU     A     uacu 

>dsi-mir-2583 (-32.00)   [dsi-miR-2583:14-35] [dsi-miR-2583*:51-73]

u    agu u   A          G  AA         cuu 
 uugc   g guc AAGUUGAGUC AU  UGCGAUcau   g
 ||||   | ||| |||||||||| ||  |||||||||    
 aacg   c cAG UUUAACUCAG UA  GUGCUagua   u
a    --g u   C          G  AC         aua 

>dsi-mir-2584 (-26.61)   [dsi-miR-2584*:34-55] [dsi-miR-2584:73-96]

u    cgacccuacu     aaaca   -  aa    A     --UCU        GAuauugc 
 ggug          uccug     uca cg  uGUG GUAAA     ACCUCUUU        a
 ||||          |||||     ||| ||  |||| |||||     ||||||||        a
 cuac          aggac     agu gc  ACAC CGUUU     UGGAGAAA        u
g    ---------u     -----   u  cG    A     UUAUC        aaucauuu 

>dsi-mir-987-2 (-29.40)   [dsi-miR-987:16-40] [dsi-miR-987*:59-80]

aug ug      gu  A        A     GAU       ag  gc 
   u  gacugu  uU AAGUAAAU GUCUG   UGAUGAa  uu  a
   |  ||||||  || |||||||| |||||   |||||||  ||  u
   a  uugacg  AA UUCAUUUA CGGAC   ACUACuu  ga  u
aca gu      uc  C        -     --A       aa  gc 

>mtr-MIR169p (-51.30)   [mtr-miR169p:21-41]

ga   u     g  ug   u    C             CG   u     u 
  agg agaga ag  gau UGAG CAGGAUGGCUUGC  Gca gcauu u
  ||| ||||| ||  ||| |||| |||||||||||||  ||| |||||  
  ucc uuucu uc  uua acuc guucuaccgggcg  cgu ugugg a
uc   -     a  gu   c    u             au   -     g 

>mtr-MIR2585a (-170.75)   [mtr-miR2585a:301-322]

-                                u         auugcaaacuaa       auca                  a  a   ga  a          c          uuauuugaugacgucgcaaucacugccacacaugaaauuccaauuuugcccuuaa 
 aauuaggggucguuuaaaaauuggucccugua ucgcuaauc            ccuugca    uuaaucauuuaaaauuuc uc uuu  cc acuuaaucac gccacgucac                                                       g
 |||||||||||||||||||||||||||||||| |||||||||            |||||||    |||||||||||||||||| || |||  || |||||||||| ||||||||||                                                       a
 uuaauccccagcaaauuuuuaacCAGGGACAU AGCGAUUAG            ggaacgu    aauuaguaaauuuuaaag ag gag  gg ugaauuagug cggugcggug                                                       a
g                                U         GACcauuaaaug       aaca                  c  a   ag  g          a          uauuuuaagguuaaaauggggacccaagguuaagaaagaaguuauaaaacaggag 

>mtr-MIR2585b (-152.40)   [mtr-miR2585b:296-317]

u     c                 a    u           u    ac  g c     auca                  a  a   ga  a             cacacauaaaauuccaauucugcccuuaagaagaugacaaaauauugaagaaagaauuggaa 
 agggg cguuuaaaaauuggucc ugua ucgcuaauccu gcaa  ua u uugca    uuaaucauuuaaaauuuc uc uuu  cc acuuaaucacugc                                                              a
 ||||| ||||||||||||||||| |||| ||||||||||| ||||  || | |||||    |||||||||||||||||| || |||  || |||||||||||||                                                              c
 ucccc gcaaauuuuuaacCAGG ACAU AGCGAUUAGGA uguu  gu g gacgu    aauuaguaaauuuuaaag ag gag  gg ugaauuagugacg                                                              c
-     a                 G    U           C    aa  g u     aaca                  c  g   ag  g             gugcaguucuuaaacuacugcacaguuagugacaauguguacuuuaagguuaaaauggggau 

>mtr-MIR2586 (-82.20)   [mtr-miR2586:167-187]

------------------------------------augacaaccuaugaagcacggauacggacacggac    g   c     a     ----gccg    aacua     u   a 
                                                                       accg aca gacac gacac        acac     auaau uga a
                                                                       |||| ||| ||||| |||||        ||||     ||||| ||| a
                                                                       uggc ugu cugug cugug        ugug     uauua acu u
aacaguagaUACUUCGUGCCUGUGAGGAGCcuaauccgcacagggucacagccugugcacagcacaggcua    -   a     g     aacauuaa    --guc     c   a 

>mtr-MIR2587a (-51.10)   [mtr-miR2587a:21-42]

-cgaug      -u    a            C          UG  --------au     
      guguca  gguc uugUUGACCGUU AUAUGAACCC  ca          ugca 
      ||||||  |||| |||||||||||| ||||||||||  ||          ||| a
      uacagu  ccag gauaacuggcaa uauacuuggg  gu          acgu 
agaaaa      uc    a            -          gu  guucaauuuu     

>mtr-MIR2587b (-52.10)   [mtr-miR2587b:18-39]

a       -u    auu          C          UG aaua   uug 
 gguguca  gguc   gUUGACCGUU AUAUGAACCC  c    aca   c
 |||||||  ||||   |||||||||| ||||||||||  |    |||    
 cuacagu  ccag   caacuggcaa uauacuuggg  g    ugu   a
a       uu    agu          -          gu ----   uca 

>mtr-MIR2587c (-51.10)   [mtr-miR2587c:21-42]

-cgaug      -u    a            C          UG  --------au     
      guguca  gguc uugUUGACCGUU AUAUGAACCC  ca          ugca 
      ||||||  |||| |||||||||||| ||||||||||  ||          ||| a
      uacagu  ccag gauaacuggcaa uauacuuggg  gu          acgu 
agaaaa      uc    a            -          gu  guucaauuuu     

>mtr-MIR2587d (-59.30)   [mtr-miR2587d:21-42]

-     ----------      -     au           C          UG  au   au 
 uugug          guguca ugguc  ugUUGACCGUU AUAUGAACCC  ca  agc  u
 |||||          |||||| |||||  ||||||||||| ||||||||||  ||  |||   
 aacac          uacagu accag  acaacuggcaa uauacuuggg  gu  ucg  g
a     agaugaaaaa      u     au           -          gu  gu   ac 

>mtr-MIR2587e (-63.40)   [mtr-miR2587e:21-42]

- gg        -     a            C          UG  au   au 
 c  ugguguca ugguc uugUUGACCGUU AUAUGAACCC  ca  agc  u
 |  |||||||| ||||| |||||||||||| ||||||||||  ||  |||   
 g  acuacagu accag gacaacuggcaa uauacuuggg  gu  ucg  g
a aa        u     a            -          gu  gu   ac 

>mtr-MIR2587f (-60.00)   [mtr-miR2587f:21-42]

- gg        -u    a            C          UG  au   au 
 c  ugguguca  gguc uugUUGACCGUU AUAUGAACCC  ca  agc  u
 |  ||||||||  |||| |||||||||||| ||||||||||  ||  |||   
 g  acuacagu  ucag gacaacuggcaa uauacuuggg  gu  ucg  g
a aa        uc    a            -          gu  gu   ac 

>mtr-MIR2588a (-127.80)   [mtr-miR2588a:21-41]

-                         C                         aaaacauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguuucaucgucuaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuguucacuuuacuugaauaaauaucaagc 
 agauagguccuuuaacuuugUAACA UGUGCAACUAAGUCCuuccguuaac                                                                                                                                                           u
 ||||||||||||||||||||||||| |||||||||||||||||||||||||                                                                                                                                                            
 ucuauccaggaaauugaaacauugu auauguugauucaggaaggcaauug                                                                                                                                                           u
g                         c                         aguggcaguuuuuuugcgacugcacugagacuucagacacuacaccguacguuuuccguuuuuguacaauaauuaaccuuuuacaauacuaauaaaaacuucuaacgacuacauugaacguacaacaaccgaaauugaacacaauaacguuguua 

>mtr-MIR2588b (-117.40)   [mtr-miR2588b:21-41]

-     a                   C                         aaaauauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguuucaucgucuaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuauucacuuuacuugauuaaauaucaagc 
 agaua guccuuuaacuuugUAACA UGUGCAACUAAGUCCuuccguuaac                                                                                                                                                           u
 ||||| ||||||||||||||||||| |||||||||||||||||||||||||                                                                                                                                                            
 ucuau caggaaauugaaacauugu auauguugauucaggaaggcaauug                                                                                                                                                           u
g     c                   c                         aguggcaguuuuuuugcgacugcaccgacacuucagacacuacaccguacguuuuccguuuuuguacaauaauuaaccuuuuacaauacuaauaaaaacuucuaacgauuacauugaacguacaacaaccgaaauugaauacaauaacguuguua 

>mtr-MIR2589 (-190.05)   [mtr-miR2589:327-348]

u    g     a                   a           c           auuuuuu         a      a             a  gu           uuau    uacaaaaauauuaugcacucaguauuagucccugcucaauucaacuauuaaaauuaaacaaauuuga 
 guug ugauu agcaaacggugaagcacac uggaugccaca cugacuuuuuu       guuaaauau uuuuua ucccuauaaaauu ag  auuuuaaguuu    uccu                                                                   a
 |||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||       ||||||||| |||||| ||||||||||||| ||  |||||||||||    ||||                                                                    
 caac acuaa ucguuuGCCACUUCGUGUG ACCUACGGugu gacugaaaaaa       caauuuaua aaaaau agggauauuuuaa uc  uaaaauucaaa    agga                                                                   u
g    a     c                   C           a           aacaacc         c      c             c  ug           --uc    augaauuaaaauuaucaacaaaaucaguaauguuuuuaugauacgugagucauaaucagagacgagu 

>mtr-MIR2590a (-69.90)   [mtr-miR2590a:157-178]

aaaau                  g          c          ucaagaaauagucuugaaauuaauguuagccaauaaaaucucagccgaaaau 
     uuuaagaaugacauggca aauaaucacc uuagauuuua                                                    c
     |||||||||||||||||| |||||||||| ||||||||||                                                    a
     aaguucuuacuguaCCGU UUAUUAGUGG AAUCUAaagu                                                    u
uuuau                  G          A          cagaguaaauaauuagaaaguauuuuuuuuuuauguauugugggugguggga 

>mtr-MIR2590b (-66.10)   [mtr-miR2590b:163-184]

ag    u                  g          c   a      -  aagaaauauucaugaaauuaauguuaaccaauaaaaucucagccugaccgga 
  aaaa uucaagaaugacauggca aauaaucacc uua auuuua uc                                                    a
  |||| |||||||||||||||||| |||||||||| ||| |||||| ||                                                     
  uuuu aaguucuuacuguaCCGU UUAUUAGUGG AAU UAaagu ag                                                    a
--    u                  G          A   C      c  aguaaauaauuagaaaguauuuuuuucuauguauuguggguggugggguacu 

>mtr-MIR2590c (-57.00)   [mtr-miR2590c:162-183]

aaaau           c      g          c   a     aucaauaaau      gaaauuaauguuagccaauaaaaucucagucuagccggaaaucau 
     uuuaagaauga auggca aauaaucacc uua auuuu          agucuu                                             g
     ||||||||||| |||||| |||||||||| ||| |||||          ||||||                                              
     aaguucuuacu uaCCGU UUAUUAGUGG AAU UAaag          ucagag                                             g
uuuau           u      G          A   C     ----------      uaaauaauuagaaaguauuuauuuuuuauguauuguggguggugg 

>mtr-MIR2590d (-72.20)   [mtr-miR2590d:164-185]

c    aaau                  g          c         aucaagaaauagucuugaaacuaauguuagccaauaaaaucucagccuggucgga 
 aaga    uucaagaaugacauggca aauaaucacc uuagauuuu                                                       a
 ||||    |||||||||||||||||| |||||||||| |||||||||                                                        
 uucu    aaguucuuacuguaCCGU UUAUUAGUGG AAUCUAaag                                                       a
u    ----                  G          A         ucagaguaaauaauuagaaaguauuuuuuuuuauguauugugggugguggguacu 

>mtr-MIR2590e (-67.80)   [mtr-miR2590e:169-190]

u    aaau                  g          c         aucaagaaauaguccugaaauuaauguuagccaauaaaaucucagucuggccggaaa 
 aaga    uuuaagaaugacauggca aauaaucacc uuagauuuu                                                         u
 ||||    |||||||||||||||||| |||||||||| |||||||||                                                         c
 uucu    aaguucuuacuguaCCGU UUAUUAGUGG AAUCUAaag                                                         a
u    ----                  G          A         uuagaguaaauaauuagaaaguauuuuuauuuuuuuuauguauuguggguggugggu 

>mtr-MIR2590f (-69.90)   [mtr-miR2590f:157-178]

aaaau                  g          c          ucaagaaauagucuugaaauuaauguuagccaauaaaaucucagccgaaaau 
     uuuaagaaugacauggca aauaaucacc uuagauuuua                                                    c
     |||||||||||||||||| |||||||||| ||||||||||                                                    a
     aaguucuuacuguaCCGU UUAUUAGUGG AAUCUAaagu                                                    u
uuuau                  G          A          cagaguaaauaauuagaaaguauuuuuuuuuuauguauugugggugguggga 

>mtr-MIR2591 (-83.37)   [mtr-miR2591:4-25]

a      C     C         GCaaauuaa       c     u uuacuucaaaaauuuauaaauuaacuaucauuuuuaugaaauaaaaagcuauuuguugauaucuauauuuuagaaaauaucauuucauaagaaaaaaagcaucauuucauuguuuauaaaaaucauacuaauuuuuuuagauuuauuguaaaaaaua 
 agGGAA UUCUA GGUACACCU         gguguau gguac c                                                                                                                                                             a
 |||||| ||||| |||||||||         ||||||| ||||| |                                                                                                                                                              
 uccuuu aagau ccauguggg         ucacaua ccaug g                                                                                                                                                             u
a      u     a         uuucuauac       a     u auuuaguaauuuaaucaucaauuuacacaauaaaaaauuucucuuuuuaacaaaagauaguggauauuaauauuauuaauuuagaauaaauaguuuuuguagcugcuuuauuuuaaacuaaaaagacuuaaaaaucaugagcauuaucucuuaaaac 

>mtr-MIR2592b (-134.50)   [mtr-miR2592b:213-233]

a         c  ca                         c  a            uc            a           gag   u c         u      c     ccaccgaa ug   uu 
 aauucaaac ug  aaacaacaggacucaagcauuucgc aa caccucauguuu  ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug        u  agg  c
 ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||  |||||||||||| |||||||||||   ||| | ||||||||| |||||| |||||        |  |||   
 uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaa  ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac        a  ucc  a
a         a  ag                         -  c            ga            a           aua   c -         u      -     -------- gu   ua 

>mtr-MIR2592c (-134.50)   [mtr-miR2592c:213-233]

a         c  ca                         c  a            uc            a           gag   u c         u      c     ccaccgaa ug   uu 
 aauucaaac ug  aaacaacaggacucaagcauuucgc aa caccucauguuu  ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug        u  agg  c
 ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||  |||||||||||| |||||||||||   ||| | ||||||||| |||||| |||||        |  |||   
 uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaa  ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac        a  ucc  a
a         a  ag                         -  c            ga            a           aua   c -         u      -     -------- gu   ua 

>mtr-MIR2592d (-153.40)   [mtr-miR2592d:216-236]

a     -           c                         -               cu            u           uau   - g         a    -          -a      a 
 gguaa uucaaacuugu aaacaacaggacucaagcauuucgc aagcgccucauguuu  ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga ggua uuaaguguca  ggauug a
 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||  |||||||||||| |||||||||||   ||| | ||||||||| |||| ||||||||||  |||||| c
 cuauu aaguuuggacg uUUGUUGUCCUGAGUUCGUAAAgcg uuuguggaguacaaa  ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccau aguucacggu  cuuaac c
-     u           u                         g               ag            u           cuc   a g         a    g          gg      u 

>mtr-MIR2592e (-128.60)   [mtr-miR2592e:219-239]

u   aua         c  ca                         c  a a          uc            a           gag   u c         u    cuc     ccaccgaa ug   uu 
 ggg   aauucaaac ug  aaacaacaggacucaagcauuucgc aa c ccucauguuu  ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga ggua   aagug        u  agg  c
 |||   ||||||||| ||  ||||||||||||||||||||||||| || | ||||||||||  |||||||||||| |||||||||||   ||| | ||||||||| ||||   |||||        |  |||   
 ucc   uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu g ggaguacaaa  ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccau   uucac        a  ucc  a
-   --a         a  ag                         -  c c          ga            a           aua   c -         u    -aa     -------- gu   ua 

>mtr-MIR2592f (-133.00)   [mtr-miR2592f:219-239]

u   aua         c  ca                         c  a            uc            a           gag   u c         u      c     ccaccgaa ug   uu 
 ggg   aauucaaac ug  aaacaacaggacucaagcauuucgc aa cacuucauguuu  ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug        u  agg  c
 |||   ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||  |||||||||||| |||||||||||   ||| | ||||||||| |||||| |||||        |  |||   
 ucc   uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaa  ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac        a  ucc  a
-   --a         a  ag                         -  c            ga            a           aua   c -         u      -     -------- gu   ua 

>mtr-MIR2592i (-135.70)   [mtr-miR2592i:219-239]

u   aua         c  ca                         c  a            uc            a           gag   u c         u      c     ccaccgaa ug   uu 
 ggg   aauucaaac ug  aaacaacaggacucaagcauuucgc aa caccucauguuu  ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug        u  agg  c
 |||   ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||  |||||||||||| |||||||||||   ||| | ||||||||| |||||| |||||        |  |||   
 ucc   uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaa  ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac        a  ucc  a
-   --a         a  ag                         -  c            ga            a           aua   c -         u      -     -------- gu   ua 

>mtr-MIR2592j (-128.30)   [mtr-miR2592j:213-233]

a         c  ca                         c  a            uc     a      a           gag   u c         u      c     ccaccgaa ug   uu 
 aauucaaac ug  aaacaacaggacucaagcauuucgc aa caccucauguuu  ccuuu aaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug        u  agg  c
 ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||  ||||| |||||| |||||||||||   ||| | ||||||||| |||||| |||||        |  |||   
 uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaa  ggaaa uuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac        a  ucc  a
a         a  ag                         -  c            ga     c      a           aua   c -         u      -     -------- gu   ua 

>mtr-MIR2592o (-132.00)   [mtr-miR2592o:219-239]

u   gca         c  ca                         c  a            uc            a         gugag   u c         u      c     ccaccgaa ug   uu 
 ggg   aauucaaac ug  aaacaacaggacucaagcauuucgc aa caccucauguuu  ccuuugaaaaua uaaauuuuu     gcu g uuuagauga gguauu aagug        u  agg  c
 |||   ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||  |||||||||||| |||||||||     ||| | ||||||||| |||||| |||||        |  |||   
 ucc   uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaa  ggaaacuuuuau auuuaaaaa     cga c aaaucuacu ccauaa uucac        a  ucc  a
-   --a         a  ag                         -  c            ga            a         aaaua   c -         u      -     -------- gu   ua 

>mtr-MIR2592p (-147.50)   [mtr-miR2592p:217-237]

gggcu             c                         -               cu            u           uau        -a     au    -         -a      a 
     aauucaaacuugu aaacaacaggacucaagcauuucgc aagcgccucauguuu  ccuuugaaagua uaaauuuuugu   gcugguuu  gauga  guau uaaguguca  ggauug a
     ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  |||||||||||| |||||||||||   ||||||||  |||||  |||| |||||||||  |||||| c
     uuaaguuuggacg uUUGUUGUCCUGAGUUCGUAAAgcg uuuguggaguacaaa  ggaaacuuuuau auuuaaagaca   cgaucgaa  cuacu  caua guucacggu  cuuaac c
-cuau             u                         g               ag            u           cuc        ac     ac    a         gg      u 

>mtr-MIR2592q (-120.00)   [mtr-miR2592q:218-238]

g  aua         c  ca                         c  a a          uc         a  a       c   gag   a c         ug     c     ccaccgaa ug   uu 
 gg   aauucaaac ug  aaacaacaggacucaagcauuucgc aa c ccucauguuu  ccuuugaaa ua uaaauuu ugu   gcu g uuuggauga  guauu aagug        u  agg  c
 ||   ||||||||| ||  ||||||||||||||||||||||||| || | ||||||||||  ||||||||| || ||||||| |||   ||| | |||||||||  ||||| |||||        |  |||   
 cc   uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu g ggaguacaaa  ggaaacuuu au auuuaaa aca   cga c aaaucuacu  cauaa uucac        a  ucc  a
-  -ga         a  ag                         -  c c          ga         c  a       a   aua   c -         ua     -     -------- gu   ua 

>mtr-MIR2592r (-135.70)   [mtr-miR2592r:219-239]

u   aua         c  ca                         c  a            uc            a           gag   u c         u      c     ccaccgaa ug   uu 
 ggg   aauucaaac ug  aaacaacaggacucaagcauuucgc aa caccucauguuu  ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug        u  agg  c
 |||   ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||  |||||||||||| |||||||||||   ||| | ||||||||| |||||| |||||        |  |||   
 ucc   uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaa  ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac        a  ucc  a
-   --a         a  ag                         -  c            ga            a           aua   c -         u      -     -------- gu   ua 

>mtr-MIR2592s (-152.30)   [mtr-miR2592s:216-236]

a                          g                   a            -              -                u c         u a    c     a   c   a  a 
 gauaaauucaaaccugucaaacaaca gacucaagcauuucgcucg cguucauguuuu ccuuugaaaagaau aaauuuuuguuaggcu g uuuagauga g uauu aagug caa gaa ug g
 |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| | ||||||||| | |||| ||||| ||| ||| || g
 cuauuuaaguuuggacgguUUGUUGU CUGAGUUCGUAAAgcgagc guaaguacaaaa ggaaacuuuucuua uuuaaaaacaauccga c aaaucuacu c auaa uucac guu cuu ac u
-                          A                   c            a              a                c -         u c    -     a   c   -  u 

>mtr-MIR2593a (-55.60)   [mtr-miR2593a:77-97]

u            -u           a                  caca      uu 
 uauaagcaaaaa  uuacauuuuag uucauucauuuaaugaug    uggucu  a
 ||||||||||||  ||||||||||| ||||||||||||||||||    ||||||  u
 auauucguuuuu  gaugUAAGAUC AAGUAAGUAAAUUacuac    accaga  u
u            uu           C                  auac      ug 

>mtr-MIR2593b (-50.30)   [mtr-miR2593b:77-97]

u            u   c       a                  caca      uu 
 uauaagcaaaag uua auuuuag uucauucauuuaaugaug    uggucu  a
 |||||||||||| ||| ||||||| ||||||||||||||||||    ||||||  u
 auauucguuuuu gau UAAGAUC AAGUAAGUAAAUUacuac    accaga  u
u            u   a       C                  auac      ua 

>mtr-MIR2593c (-55.60)   [mtr-miR2593c:77-97]

u            -u           a                  caca      uu 
 uauaagcaaaaa  uuacauuuuag uucauucauuuaaugaug    uggucu  a
 ||||||||||||  ||||||||||| ||||||||||||||||||    ||||||  u
 auauucguuuuu  gaugUAAGAUC AAGUAAGUAAAUUacuac    accaga  u
u            uu           C                  auac      ug 

>mtr-MIR2594a (-25.50)   [mtr-miR2594a:44-64]

-ccgcuucuc      g   uagu     c   g   uug 
          agugcu cug    uccuu ggc aug   c
          |||||| |||    ||||| ||| |||    
          ucacgG GAC    AGGAA CCG UAC   u
ugccucaucu      A   -CGU     -   G   Cac 

>mtr-MIR2594b (-25.50)   [mtr-miR2594b:44-64]

-ccgcuucuc      g   uagu     c   g   uug 
          agugcu cug    uccuu ggc aug   c
          |||||| |||    ||||| ||| |||    
          ucacgG GAC    AGGAA CCG UAC   u
ugccucaucu      A   -CGU     -   G   Cac 

>mtr-MIR2595 (-52.60)   [mtr-miR2595:101-121]

aguu         -a                 u        u         caguucuaauuuuauagcu 
    uuugcaauu  uaaaagagauauagaga gagaaugu acaagucug                   a
    |||||||||  ||||||||||||||||| |||||||| |||||||||                   g
    ggacguuaa  auuuucUCUGUAUUUCU CUUUUACA uguuuagac                   u
--gc         aa                 U        U         auucagacaauaccuguuc 

>mtr-MIR2596 (-50.30)   [mtr-miR2596:19-39]

g        -              U       U          uuucu 
 uuggguug caaaagggaUCUAU UCAUUGU CCACACAuuu     u
 |||||||| |||||||||||||| ||||||| ||||||||||      
 aacccaac guuuuuucuagaua aguaaua gguguguaaa     g
a        u              u       -          uccaa 

>mtr-MIR2597 (-44.50)   [mtr-miR2597:68-88]

u     --a     c      -u                    gaua      a 
 ugaag   cgaau uugauc  aucgacgaaguaucaaauga    gaaauc u
 |||||   ||||| ||||||  ||||||||||||||||||||    |||||| u
 acuuu   gcuua aauuAG  UAGCUGCUUCAUGGUUUauu    uuuuag u
u     aua     a      UU                    -aua      u 

>mtr-MIR2111g (-59.00)   [mtr-miR2111g:20-40]

a  ug -gu   c   --u                  A      uu    auca      cagaauaaugaaaucaaauugauggcuucuauu 
 au  c   aau guu   cuaAGCCUCGGAGUGCGG UUAUCu  uccu    ccaaug                                 u
 ||  |   ||| |||   |||||||||||||||||| ||||||  ||||    ||||||                                  
 ua  g   uua uaa   gauuuggagucuuacguc aauaga  agga    gguuau                                 u
c  gu auu   -   ugu                  c      uu    -aug      aaauaagauugagguaguauacuccuguauauc 

>mtr-MIR2111h (-47.92)   [mtr-miR2111h:20-40]

-ag     -   c  -au              C            -   aucga 
   auugg gau ag   gagaUAAUCUGCAU CUGAGGUUUAga aca     u
   ||||| ||| ||   |||||||||||||| |||||||||||| |||     g
   uaacc cua uc   cucuauuagacgua gauuccgaaucu ugu     c
acg     a   u  cuu              a            a   caaug 

>mtr-MIR2111i (-55.62)   [mtr-miR2111i:140-160]

c   auc          a             cu       ca      -caga     aauaaucu    a  uu  -   -   c 
 ugu   uaagccuuag augcagauuaucu  uccuuau  ccaaug     acuga        ugau gu  cc auu uuc a
 |||   |||||||||| |||||||||||||  |||||||  ||||||     |||||        |||| ||  || ||| ||| a
 acg   AUUUGGAGUC UACGUCUAAUaga  aggaaug  gguuau     uggcu        auua cg  gg uaa gag u
a   -au          C             uu       --      aaaua     ---gaugu    c  cu  a   c   a 

>mtr-MIR2111j (-44.30)   [mtr-miR2111j:20-40]

a      --g      uua            C      U   u  -    au 
 uauugg   uaagga   gaUAAUCUGCAU CUGAGG UUA ag caau  u
 ||||||   ||||||   |||||||||||| |||||| ||| || ||||   
 guaacc   auuccu   cuauuagacgua gauucc aau uc guug  u
g      gua      uuc            a      u   u  u    au 

>mtr-MIR2111k (-46.90)   [mtr-miR2111k:20-40]

a      -   -uc  uu        U      UG         acaac   ugc 
 uauugg gau   ga  ggaUAAUC GCAUCC  AGGUUUAga     aga   g
 |||||| |||   ||  |||||||| ||||||  |||||||||     |||    
 guaacc cua   cu  ucuauuag cguagg  uccgaaucu     ucu   u
c      a   uuc  uc        u      gu         ----a   uaa 

>mtr-MIR2111l (-61.00)   [mtr-miR2111l:160-180]

aacaacagaugcguaauucuauc       ug      u        cu       ca      caaaacuaugaaaucaauuugauauaguuuccauuuu 
                       uaagccu  ggaugc gauuaucu  uccuuau  ccaaug                                     a
                       |||||||  |||||| ||||||||  |||||||  ||||||                                     c
                       AUUUGGA  CCUACG CUAAUaga  aggaaug  gguuau                                     a
----cuguugauguuauaacgaa       GU      U        uu       --      aaagaugguuaagauaguacugcuguauaacgagauu 

>mtr-MIR2111m (-57.82)   [mtr-miR2111m:20-40]

a      -gug    ug            UC          a  c   au           ccaaa 
 uauugg    agga  ggaUAAUCUGCA  CUGAGGUUUA ga aau  uugcguaauuu     a
 ||||||    ||||  ||||||||||||  |||||||||| || |||  |||||||||||     a
 guaacc    uccu  ucuauuaggcgu  ggcuccgaau cu uug  aaugcguuaaa     a
c      acua    uu            ga          -  -   cu           uaaau 

>mtr-MIR2111n (-122.70)   [mtr-miR2111n:354-374]

u          ua     auc       ug ag            cu      ac        gcguagaacuaugaaauuguuggguuucaaaugugagugauuaagucucacaucaauuugaaaugaagaaaauguuugauauaaagugaugcgacacauauacuuaauaucuuaaggaauugggugaagauaug 
 aacagcugcg  auugu   uaagccu  g  ugcagauuaucu  uccuua  cccaauag                                                                                                                                      g
 ||||||||||  |||||   |||||||  |  ||||||||||||  ||||||  ||||||||                                                                                                                                      u
 uuguugaugu  uaacg   AUUUGGA  C  ACGUCUAAUaga  aggaau  ggguuauu                                                                                                                                      g
-          ua     -au       GU CU            uu      --        aauauggcugagguaguucuucugaauaacgagauuuccuuuuaccuuuggcaguacaacuauacacaacacaucagaacccucgccgcccucgccauuauccgauauguagcuccuagagauucucugaaacu 

>mtr-MIR2111o (-44.70)   [mtr-miR2111o:20-40]

a     -a   -u   ua            UC UG         aua    cug 
 uauug  guu  gga  ggaUAAUCUGCA  C  AGGUUUAga   acag   c
 |||||  |||  |||  ||||||||||||  |  |||||||||   ||||    
 guaac  caa  ccu  ucuauuagacgu  g  uccgaaucu   uguu   g
g     ca   uu   uc            ga gu         --a    aau 

>mtr-MIR2111p (-51.10)   [mtr-miR2111p:21-41]

--uua      --      u           C         U     -      u 
     auuggu  uaagga agggUAAUCUG AUCCUGAGG UUAga gcaaca u
     ||||||  |||||| ||||||||||| ||||||||| ||||| ||||||  
     uaacca  auucuu uuucauuagac uagggcucc gaucu uguugu u
aagug      ua      u           a         u     a      g 

>mtr-MIR2111q (-41.70)   [mtr-miR2111q:98-118]

g      auc   u         a       -   uu      aua        ---aa  ag   c 
 uguugu   uag ccucgggau cagauua cuu  uucuua   ccaaugug     au  gga u
 ||||||   ||| ||||||||| ||||||| |||  ||||||   ||||||||     ||  |||  
 auaaca   AUU GGAGUCCUA GUCUAAU ggg  aggagu   gguuauau     ug  cuu u
g      -aa   U         C       a   -u      --g        aagag  -g   g 

>mtr-MIR2111r (-51.22)   [mtr-miR2111r:21-41]

uauau       ---   ug            UC UG       -    aaua    c       ccccu 
     uggguga   gga  ggaUAAUCUGCA  C  AGGUUUA aaac    guua guaauua     a
     |||||||   |||  ||||||||||||  |  ||||||| ||||    |||| |||||||     a
     auccacu   ccu  ucuauuagacgu  g  uccgaau uuug    uaau cauugau     a
--cgu       auu   uu            ga gu       c    ---c    a       uaaaa 

>mtr-MIR2111s (-49.00)   [mtr-miR2111s:21-41]

--ag         --    ucc       U           U   -aa      a 
    uauugguua  agga   ggUAAUC GCAUCCUGAGG UUA   acaaua a
    |||||||||  ||||   ||||||| ||||||||||| |||   ||||||  
    guaaccagu  uccu   ccauuag cguagggcucc gau   uguuau u
acau         au    uuu       u           u   cua      u 

>mtr-MIR2598 (-164.30)   [mtr-miR2598:21-41]

-                                                              u               a                 au       caaguguuuuuuuuuuuuuugacaaauuuaucaacaaguauuuuagaaagaaaaaaagaacau 
 ggacuauuucuugauaaaauCUAAGGGUGAUUAUUCUGCCAugucauucuugaaauuuuuuu gaaaaaaucuuucuu auauauagcauugcucu  uuauuaa                                                               u
 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||  |||||||                                                                
 ccugauaaagaacuauuuuagauucccacuaauaagacgguacaguaagaacuuuaaaaaaa cuuuuuuagaaagaa uauauaucguaacgaga  aauaauu                                                               u
u                                                              -               c                 --       aauagcgauaagauucuauaaaucaguugcaaaauuuuucagauuuuauuuuuuaaguuaugu 

>mtr-MIR2599 (-78.50)   [mtr-miR2599:21-41]

-       a       a   a                     a    a     u    -----------       cg      u  a  u 
 uaaacaa gaauaaa cau UGGGUACAAGGAAUCUACUUU uuca cacac aacc           uaauuuc  agacau uu ca g
 ||||||| ||||||| ||| ||||||||||||||||||||| |||| ||||| ||||           |||||||  |||||| || ||  
 auuuguu cuuauuu gua acccauguuccuuagaugaaa aagu gugug uugg           auuaaag  ucugua aa gu c
u       c       a   c                     c    c     u    uucuuuuuggu       au      c  a  c 

>mtr-MIR2600 (-66.12)   [mtr-miR2600:21-41]

c      accuuu            A                     c     aaaga 
 ggguac      uugggugACAUU GCCAAUCACAAUGCCacaaug uugug     g
 ||||||      |||||||||||| ||||||||||||||||||||| |||||     a
 cuuaug      gacccacuguaa cgguuaguguuacgguguuac aacac     g
u      ------            c                     a     aaaga 

>mtr-MIR2601 (-88.00)   [mtr-miR2601:21-42]

a          u                                  cuaaaaaaaagauuguuugaguacuuuaauuuaauuuucguuacauuuuuugguccauucc 
 uuuugguccu uaaguauuUAUUUGGUAUCGCUUUGGUCCCuuaa                                                             g
 |||||||||| ||||||||||||||||||||||||||||||||||                                                             u
 aaaaccaggg auucauaaauaaaccauagugaaaccagggaauu                                                             u
g          c                                  acaaaggucucgguuacgguuuugcugugcacauagugugaauuguaaaaaauaauuugga 

>mtr-MIR2602a (-80.80)   [mtr-miR2602a:131-151]

a    caca         c                  a   c           c     a      aagaagaggacaaaauau 
 cugc    ucacuaauu gaugacguggcaaucacu cca acaugaaauuc aauuu gcccuu                  u
 ||||    ||||||||| |||||||||||||||||| ||| ||||||||||| ||||| ||||||                  g
 gacg    agugauuaa cUACUGCACCGUUAGUGA GGU uguacuuuaag uuaaa ugggga                  a
-    auac         a                  C   a           a     a      cccaaagguuaagaaaga 

>mtr-MIR2602b (-94.10)   [mtr-miR2602b:130-150]

a   c  c          c                  a   c                        aagaa   --ga   aua  g 
 cug ca gucacuaauu gaugacguggcaaucacu cca acaugaaauuccaauuuugcccuu     gag    caa   uu a
 ||| || |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||     |||    |||   || a
 gac gu cagugauuaa cUACUGCACCGUUAGUGA GGU uguacuuuaagguuaaaaugggga     cuc    guu   aa g
-   c  a          a                  C   a                        -----   aaag   aag  a 

>mtr-MIR2603 (-167.10)   [mtr-miR2603:21-42]

-                  --       U        C                                               u           a      caac  -ag  c     aaucauuucacgcccacguggcaccaauaucaauauuuu 
 uuggucccugcacuuuuu  ugUUUGG AUUGGUCC UGCACUUuguaaaaauauugguauugguuccucuguuaacuuucugu aaaaaaaaaac caaaac    gg   ug ggccc                                       u
 ||||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    ||   || |||||                                        
 aaccagggaugugaaaaa  acaaacc uaaccagg acgugaaacauuuuuauaaccauaaccagggagauaauugaaagaca uuuuuuuuuug guuuug    cc   ac ccggg                                       a
u                  aa       u        a                                               -           g      auaa  aua  -     acgugaaacauuuuauaaccauaaacagggacguuaaac 

>mtr-MIR2604 (-138.10)   [mtr-miR2604:21-41]

-    g                 A                         a c       uagaguguauuuaaccacuguuuaguuauuuauuugcuaaaauacuccuucuaaaaaauaaguggguguauucuagcaaaugcc 
 guuu cuagaacacauccacUA UUUUUAUGUGGGAGUGUUuuagcaa g uauaacu                                                                                    u
 |||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||                                                                                    a
 uaaa gaucuugugugggugau aaaaauacacccucacaaaaucguu c auauuga                                                                                    u
u    a                 c                         - a       uuuuuuaauuauuuauguggaauuccacauacaacgauauugugugaaagauuuuuuuguucacccacacaagaucguuuagaa 

>mtr-MIR2605 (-77.60)   [mtr-miR2605:15-34]

a  u  a  cu      U      UA  -  C                 c   a c  cu     ua      ca  aucuacuuaaacugaguuuaaauauguacacuuaaacuuaguuuacaugaccuacuuaaaauaa 
 ga gu ca  uaaACU AGUUUA  UG AC UACuuaaacuggguuua aug g ua  uaaac  aguuua  ug                                                                g
 || || ||  |||||| ||||||  || || ||||||||||||||||| ||| | ||  |||||  ||||||  ||                                                                u
 cu ca gu  auuuga ucaaau  ac ug augaauuugauucaaau uau c gu  auuug  ucaaau  ac                                                                u
c  c  -  ac      c      uc  a  u                 u   c a  ac     gc      uc  auguaaauuuucaaguuggaacaaguuacuaagauacauuagagucaaauucauacauguacau 

>mtr-MIR2606a (-87.00)   [mtr-miR2606a:21-41]

---cgauua g                            C                       aa   ---aua     ug   auaa  a c   g 
         g agaaaacuuaggUACAAUUCCUUAGGUG UUUUcguaugguucuuaauuaaa  uac      uuuuu  gau    ca a uuu a
         | |||||||||||||||||||||||||||| |||||||||||||||||||||||  |||      |||||  |||    || | |||  
         c ucuuuugaauccauguuaaggaauccac aaaagcauaccaagaauugauuu  aug      aaaga  cua    gu u aaa g
auuaguuua g                            a                       aa   guacua     gu   ---g  a u   a 

>mtr-MIR2606b (-83.20)   [mtr-miR2606b:16-36]

a                          G        ug          u      uu   caugauuuccucaaaugcauaauuuu 
 ggagaaaacuuaggUACAAUUCCUUA GUGCUUUU  uaugguucuu acuaaa  uac                          c
 |||||||||||||||||||||||||| ||||||||  |||||||||| ||||||  |||                           
 ccucuuuugaauccauguuaaggaau cacgaaaa  auaccaagaa ugauuu  aug                          u
a                          a        gu          u      uu   uauaauaaaccuauauuguuugaaac 

>mtr-MIR2606c (-83.20)   [mtr-miR2606c:16-36]

a                          G        ug          u      uu   caugauuuccucaaaugcauaauuuu 
 ggagaaaacuuaggUACAAUUCCUUA GUGCUUUU  uaugguucuu acuaaa  uac                          c
 |||||||||||||||||||||||||| ||||||||  |||||||||| ||||||  |||                           
 ccucuuuugaauccauguuaaggaau cacgaaaa  auaccaagaa ugauuu  aug                          u
a                          a        gu          u      uu   uauaauaaaccuauauuguuugaaac 

>mtr-MIR2607 (-24.00)   [mtr-miR2607:74-94]

cacau     uaagg    uaa       -       u     gauuaagaugccuug 
     gcaua     aguc   gagcauu gucacau gucau               u
     |||||     ||||   ||||||| ||||||| |||||               u
     uguau     uuag   uuUGUGA UAGUGUA UAGUG               g
----u     -ugua    uua       A       U     UAuaaguuaguaaua 

>mtr-MIR2608 (-58.65)   [mtr-miR2608:183-204]

a      -    aaa      u         a    cua         -          cucucucagacucacauuaucuucuuauucccucucuuccuuuuucu 
 uugcaa agag   ugauau uguacaacu uuuu   acaacuuuu ugacaacuuu                                               c
 |||||| ||||   |||||| ||||||||| ||||   ||||||||| ||||||||||                                               u
 aacguu UCUC   ACUAUA ACAUGUUGa gaaa   uguugaaag acuguugaaa                                               c
a      a    AUC      U         -    cca         u          ccaaaagagagaaaacuaaccaguuuuuauuaucucucucucucucu 

>mtr-MIR2609a (-58.50)   [mtr-miR2609a:17-37]

ggcc       ---   u      G  -A     -UCU  C  g       aaaguuuagauguauggaaaucuucauuagauaaauaugaaagaguucuucacaaagagauucaugaaauucuuaaagu 
    uuccauu   ggc uUGGAA UA  UAGGU    CA Uu uuuggca                                                                               u
    |||||||   ||| |||||| ||  |||||    || || |||||||                                                                                
    aagguaa   ucg gauuuu gu  aucca    gu aa aaaccgu                                                                               a
acuu       aag   u      g  ac     uauc  u  g       aucgaguaaaguauucuuaacuucuuuguucgcuacaguucuuuuuaugggaagacuaguaguagguuuaguaguaucg 

>mtr-MIR2609b (-58.50)   [mtr-miR2609b:17-37]

ggcc       ---   u      G  -A     -UCU  C  g       aaaguuuagauguauggaaaucuucauuagauaaauaugaaagaguucuucacaaagagauucaugaaauucuuaaagu 
    uuccauu   ggc uUGGAA UA  UAGGU    CA Uu uuuggca                                                                               u
    |||||||   ||| |||||| ||  |||||    || || |||||||                                                                                
    aagguaa   ucg gauuuu gu  aucca    gu aa aaaccgu                                                                               a
acuu       aag   u      g  ac     uauc  a  g       aucgaguaaaguauucuuaacuucuuuguucgcuacaguucuuuuuaugggaagacuaguaguagguuuaguaguaucg 

>mtr-MIR2609c (-58.50)   [mtr-miR2609c:17-37]

ggcc       ---   u      G  -A     -UCU  C  g       aaaguuuagauguauggaaaucuucauuagauaaauaugaaagaguucuucacaaagagauucaugaaauucuuaaagu 
    uuccauu   ggc uUGGAA UA  UAGGU    CA Uu uuuggca                                                                               u
    |||||||   ||| |||||| ||  |||||    || || |||||||                                                                                
    aagguaa   ucg gauuuu gu  aucca    gu aa aaaccgu                                                                               a
acuu       aag   u      g  ac     uauc  u  g       aucgaguaaaguauucuuaacuucuuuguucgcuacaguucuuuuuaugggaagacuaguaguagguuuaguaguaucg 

>mtr-MIR2610a (-120.00)   [mtr-miR2610a:2-22]

aAGAUUGAGACUUGUAUGGCUUcguugaaggaugcccggagaguaauucaggaaggcaaaaccgaaggcuggggucagcuaguggaguugccagaaaacaagcguaaggagggaauugguuuccuuaacaguaagccugggauguucgacccuac   -          ------     -u      u      augauucaccagagaccaaug 
                                                                                                                                                           cag agguucuuuc      cacag  gcuggu ucauuc                     c
                                                                                                                                                           ||| ||||||||||      |||||  |||||| ||||||                     a
                                                                                                                                                           guc uucgaggagg      guguu  uggcca agugag                     a
---------------uuguuucgggauguacuaaagugaaagcggaacccgucuugcuuuccucaaaagaauuuuuguuuuuuguuguuuucuguucuguuuguguaaugaaucucgucccacagugucuuccuuacaguugucguuaggucaac   g          uccgca     uc      c      gagguccacguaguagauuuu 

>mtr-MIR2610b (-120.10)   [mtr-miR2610b:2-22]

aAGAUUGAGACUUGUAUGGCUUcguugaaggaugcccggagaguaauucaggaaggcaaaaccgaaggcuggggucagcuaguggaguugccagaaaacaagcguaaggagggaauugguuuccuugacaguaagccugggauguucgacccuac   -          ------     -u      u      augauucaccagagaccaaug 
                                                                                                                                                           cag agguucuuuc      cacag  gcuggu ucauuc                     c
                                                                                                                                                           ||| ||||||||||      |||||  |||||| ||||||                     a
                                                                                                                                                           guc uucgaggagg      guguu  uggcca agugag                     a
---------------uuguuucgggauguacuaaagugaaagcggaacccgucuugauuuccucaaaagaauuuuuguuuuuuguuguuuuuuguucuguuuguguaaugaaucucgucccacagugucuuccuuacaguugucguuaggucaac   g          uccgca     uc      c      gagguccacguaguagauuuu 

>mtr-MIR2611 (-85.06)   [mtr-miR2611:9-29]

u   -uuu              U    -GAA  u    g u   u    gg    ca     agacuggaaagaaagaacaugcuaucuacuaucugagcaagaaguucaccgacugugaaacucgguauacaaugcuugagaagacuug 
 gau    gUAUUUGUCAGUGU UGAU    uc gugg a gcg gcuu  ucaa  agaug                                                                                        u
 |||    |||||||||||||| ||||    || |||| | ||| ||||  ||||  |||||                                                                                         
 cug    cguagacggucgca guua    gg cauu u cgu cgaa  aguu  ucuau                                                                                        u
u   uuuu              c    gaag  u    g -   -    ag    --     augaacuagccuagguaagaccuauaguugguucaacauacuaagugguuuauuacugcguccgcaaaccgucggguucgaucuggug 

>mtr-MIR169q (-61.70)   [mtr-miR169q:21-41]

a   - u          u  u      A    GA          uu    g   a   -     a 
 gag g agagagagua au UGAGCC GGAU  CUUGCCGGca  ugcu uaa ugu agaag a
 ||| | |||||||||| || |||||| ||||  ||||||||||  |||| ||| ||| ||||| u
 cuc c uuucucucgu ua acucgg ucua  gagcgguugu  gugg auu aca ucuuc c
a   a c          u  u      a    ag          -u    a   a   c     c 

>mtr-MIR2585c (-186.50)   [mtr-miR2585c:299-320]

u      g                   g  u                ac  g       auca                 a    u  ga  a         c         acuaauuugaugauguggcaaucacugccaaacaugaaauuccaauuuugcccuuaa 
 gggggu guuuaaaaauuggucccug ua ucgcuaauccuggcaa  ua ccuugca    uuaaucauuuaaaauuu gucc uu  cc acuuaauca ugccacguc                                                         g
 |||||| ||||||||||||||||||| || ||||||||||||||||  || |||||||    ||||||||||||||||| |||| ||  || ||||||||| |||||||||                                                         a
 ucccca caaauuuuuaacCAGGGAC AU AGCGAUUAGGACcguu  au gggacgu    aauuaguaaauuuuaaa cagg ag  gg ugaauuagu acggugcgg                                                         a
-      g                   -  U                aa  g       aaca                 g    u  ag  g         a         uguacuuuaagguuaaaaugggguccuaaagguuaggaaaaaguuauaaaacaggag 

>mtr-MIR2585d (-238.50)   [mtr-miR2585d:328-349]

u                                         gu     gu         a                             a            cc  a                          a                      -      -a     agaagaugaagac 
 aggcgucauuuaaaaauuagucccuguaaucguuaauccug  aauuu  ccuugcauu uuuaaucauuuaaaauuucguccuuugac aacuuaaucacu  ca gucaucaaauuagcaaaauggcaugg aauggacaaaaauacccucguc uuuauu  ugaga             a
 |||||||||||||||||||||||||||||||||||||||||  |||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||             g
 uccgcaguaaauuuuuaauCAGGGACAUUAGCGAUUAGGAC  uuaaa  ggaacguaa aaauuaguaaauuuuaaagcaggaaacug uugaauuaguga  gu caguaguuuaaucguuuuacuguacc uuaccuguuuuuaugggagcag agguaa  acuuu             g
-                                         ug     ug         c                             g            ca  g                          c                      u      gc     acuguaaaaauag 

>mtr-MIR2585e (-238.50)   [mtr-miR2585e:328-349]

u                                         gu     gu         a                             a            cc  a                          a                      -      -a     agaagaugaagac 
 aggcgucauuuaaaaauuagucccuguaaucguuaauccug  aauuu  ccuugcauu uuuaaucauuuaaaauuucguccuuugac aacuuaaucacu  ca gucaucaaauuagcaaaauggcaugg aauggacaaaaauacccucguc uuuauu  ugaga             a
 |||||||||||||||||||||||||||||||||||||||||  |||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||             g
 uccgcaguaaauuuuuaauCAGGGACAUUAGCGAUUAGGAC  uuaaa  ggaacguaa aaauuaguaaauuuuaaagcaggaaacug uugaauuaguga  gu caguaguuuaaucguuuuacuguacc uuaccuguuuuuaugggagcag agguaa  acuuu             g
-                                         ug     ug         c                             g            ca  g                          c                      u      gc     acuguaaaaauag 

>mtr-MIR2612a (-65.89)   [mtr-miR2612a:20-40]

a    c   a                        G    G     c            uacacaa 
 uaag ucu ucauguauuUGAUAGUGUCAACUA UACA aaaac uaucuaucuagc       u
 |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||||||        
 guuc aga aguacauaaacuauuacaguugau augu uuuug auagauagauug       c
a    a   a                        g    a     a            uauaaaa 

>mtr-MIR2612b (-65.89)   [mtr-miR2612b:20-40]

a    c   a                        G    G     c            uacacaa 
 uaag ucu ucauguauuUGAUAGUGUCAACUA UACA aaaac uaucuaucuagc       u
 |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||||||        
 guuc aga aguacauaaacuauuacaguugau augu uuuug auagauagauug       c
a    a   a                        g    a     a            uauaaaa 

>mtr-MIR2613 (-40.00)   [mtr-miR2613:112-132]

a    a   --gagaa  ag        g       g  g  ggugugaauacaguuaugaggagaaaaauggu 
 aucg ucu       ga  guugauug cggcggu gu gu                                u
 |||| |||       ||  |||||||| ||||||| || ||                                g
 uggc aga       cU  UAACUGGU GCCGCUG Ca cg                                u
g    g   agaaagg  GG        G       G  g  acuagaggcaaguggugguaggaggcuauuuu 

>mtr-MIR2614 (-59.00)   [mtr-miR2614:141-160]

--------------------------------------------uggaaaugaguggagucgaaccgaacc    u       gc    --cua  uaa   u 
                                                                       uguc gagcucg  ucga     ga   gaa u
                                                                       |||| |||||||  ||||     ||   |||  
                                                                       acag cuugagc  agcu     cu   cuu u
aCUUGGAUUGCUCAGCUUGGCuugauaagcacuugaaauuuguucagcuuaagcucgacuuuuuuucaagc    -       uc    caaaa  cgg   g 

>mtr-MIR2615a (-40.20)   [mtr-miR2615a:221-241]

cguuuaaaaccucuuguc   a         -  u   -- g   c       -u   u   u    c  uu    uu ---     uuuuuugucuuuagucauucaaaaaaguuuuuuuuacguuaaauc 
                  cgu uuuuaaaau ug uca  c uuc cuuuuuu  cgu guu uuac au  aaag  c   guguu                                             a
                  ||| ||||||||| || |||  | ||| |||||||  ||| ||| |||| ||  ||||  |   |||||                                             a
                  gCG AAAAUUUUA GC AGU  g aag gaaaaaa  gca uag aaug ua  uuuu  g   cgcag                                             c
--acuaauuauuuuuuuu   G         C  U   CC g   a       cu   c   c    c  uu    uu aua     cauuuuuacuuucacucugcaaaaauuugcagcacuuugcgcuug 

>mtr-MIR2615b (-39.80)   [mtr-miR2615b:221-241]

guuuaaaaccucuuguc   a         -  u   -- g   c       -u   u   u    c  uu    uu -    uuuuuuugucuuuagucauucaaaaaaguuuuuuuuuacguuaaauca 
                 cgu uuuuaaaau ug uca  c uuc cuuuuuu  cgu guu uuac au  aaag  c gugu                                                a
                 ||| ||||||||| || |||  | ||| |||||||  ||| ||| |||| ||  ||||  | ||||                                                 
                 gCG AAAAUUUUA GC AGU  g aag gaaaaaa  gca uag aaug ua  uuuu  g uacg                                                c
-acuaauuauuuuuuuu   G         C  U   CC g   a       cu   c   c    c  uu    uu a    cagcauuuuuacuuucacucugcaaaaauuugcagcacuuugcgcuug 

>mtr-MIR2615c (-31.90)   [mtr-miR2615c:193-213]

--------------------------------ccguauuuuaaaaugguucacguucccuuuuauucguuuuuuu   ccauuu     u    --uuucu   --c     uc  uca      u 
                                                                           gua      aaagu uggg       ugu   uuuag  gu   aaaagu u
                                                                           |||      ||||| ||||       |||   |||||  ||   ||||||  
                                                                           cau      uuuca acuc       gca   aaauu  ca   uuuuua u
ugCGGAAAAUUUUACGCUAGUCCggaagagaaaaaaacugcacuagcaaugcuaauuuuuuuuucugauacgcug   uuuuac     c    uacgcuu   acu     ua  ---      u 

>mtr-MIR2616 (-68.70)   [mtr-miR2616:5-26]

u           U GU   G C     accacggguauggauuuuguugccaugccuaccuccaagcuacuaaagacaccuucagaagaaccuguuuaugccaacuaagaucucucguugcaucaacauccauauuuugaugcaauu 
 caaAUUGGGUU G  UCG G GGAUa                                                                                                                        g
 ||||||||||| |  ||| | |||||                                                                                                                         
 guuugacucaa c  agu c ccugu                                                                                                                        g
u           u ug   g -     aauaauuuuuuuaauuguuaaaaccaauaaugauguuucgugucucaacauagcagaaaacauauauauuuuuuuuccuuuauuguauccuuaauuccuuguuuaaaucccuacaacgua 

>mtr-MIR1509b (-47.40)   [mtr-miR1509b:19-40]

u       u  c   cu       U       U     C   u  ccau       g 
 ugaucca ug auu  uUUAAUC AGGAAAU ACACU Gag ga    gagauga g
 ||||||| || |||  ||||||| ||||||| ||||| ||| ||    ||||||| a
 acuaggu ac uaa  aaauuag uccuuua uguga cuc cu    cucuauu u
u       u  u   ag       u       -     u   u  cucu       a 

>mtr-MIR2617a (-28.20)   [mtr-miR2617a:2-21]

aU            G      uggguuga    u  ---u       uaa 
  GUAGUGUAGCAU CCCGUU        acuc ga    guugaau   u
  |||||||||||| ||||||        |||| ||    |||||||    
  uaucacauugug gggcaa        uggg uu    uaauuua   u
-g            -      --------    u  ucau       uua 

>mtr-MIR2617c (-24.42)   [mtr-miR2617c:21-40]

c        aaauu   -aa  GU          G      - g    uuacuga         
 uauuuaag     uug   aU  AGUGUAGCAU CCCGUU u ugaa       ugaauauu 
 ||||||||     |||   ||  |||||||||| |||||| | ||||       ||||||| u
 augaauuc     aac   ua  uuacauugug gggcaa g guuu       auuuauau 
u        -----   agg  gu          -      u g    -ucauua         

>mtr-MIR2617b (-23.90)   [mtr-miR2617b:2-21]

a             G     Uuggugaau     ----    -        
 UGUAGUGUAGCAU CCCGU         uacuc    ugau gaauauu 
 ||||||||||||| |||||         |||||    |||| |||||| u
 auauuacauugug gggca         auggg    auua uuuauau 
-             -     ---------     uuuc    a        

>mtr-MIR2618a (-68.40)   [mtr-miR2618a:301-322]

guagguuaauguaauuucaguuuacguauguucaauuuagguuaauguaaauucaguuuacuuauguauaugguguagguuaauguaaauucaguuuacguauauucaauuuaguuuaauguaaauucaauuuacg        a        -         ----ua         auguuu  aag       uaug    ua 
                                                                                                                                        uauguuaa uuuagguu aacguaaau      aguuuacgu      au   agguuag    aauu  g
                                                                                                                                        |||||||| |||||||| |||||||||      |||||||||      ||   |||||||    ||||   
                                                                                                                                        auguaauu gaauuuaa uuguauuua      uuaaaugua      ug   ucuaauu    uuga  u
---------------------------------------------------------------aauguaauuguauuuaacUUGCAUGCAUUUGACUUAAGUGugauuagagaauauauguaugcauuuuaauuaa        -        c         uuugac         ----au  -ga       ugua    uu 

>mtr-MIR2618b (-69.30)   [mtr-miR2618b:249-270]

agcauguaccauguacgaauuuggguugcauucugacuagguaucucuuucaaauuauacguaaauauauuuaaaagagauacguauguauauaa   gu   u       u       uuaugu            -----aau        
                                                                                               gag  uag gugaauu aauuuac      uuaaucuagguu        guaaauu 
                                                                                               |||  ||| ||||||| |||||||      ||||||||||||        |||||| u
                                                                                               cuu  auu cauuuaa uuaaaug      aauuagauuuaa        cauuuaa 
-------auguaauuggaucuaacUUGCAUGCAUUUGACUUAAGUGugauuggagaauauauguauacaauugaauuaaauguaauugaauuuaa   gu   -       c       -----u            caaguauu        

>mtr-MIR2619 (-156.60)   [mtr-miR2619:210-230]

agccc      u                 au c                   a       a  uc                                            auggucgaaacgug 
     ccuaac aauuaaaauacaaaaca  c ccuauguauuggaucuuug caguuuu gc  ccaagaccacuuuugauuuagucuuuguugacguggcacccaca              a
     |||||| |||||||||||||||||  | ||||||||||||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||              u
     ggauug uuaauuuUAUGUUUUGU  G GGAUACAuaaccuagaaac gucaaaa cg  gguuuuggugaaaacugaauuagaagcgacugcaccgugggugu              a
cugua      u                 CG A                   c       c  ga                                            agggaauucgcucc 

>mtr-MIR2620 (-56.76)   [mtr-miR2620:181-202]

-   ---u   c   -   uu   gg    u     gacuuu   cc      aaaguauuguggggaaugugaccgcauguaacagucugaguuuuagugaugaagac 
 uac    aga cag gcu  ugu  auua gaugu      ggg  aguuug                                                        c
 |||    ||| ||| |||  |||  |||| |||||      |||  ||||||                                                         
 aug    ucu GUC CGG  ACA  UAGU UUgua      ucc  ucagac                                                        u
a   uaau   C   U   CC   GA    C     accuau   --      aagacguuucaugucucuacucauugcggacuaacacgaagaaggggaggcgaccc 

>mtr-MIR2621 (-52.70)   [mtr-miR2621:21-42]

gauccuaggagcuaaagugaAGCUUGGGCUAGGAAUUUGUGCuaauuaaggcaaggggguuauucuuca         a      -        --uuu       a 
                                                                     ucauaauca uuaguu uuuaaguu     cuuaauu u
                                                                     ||||||||| |||||| ||||||||     |||||||  
                                                                     aguauuagu aguuaa aaguuuaa     gaauuag g
-------------------guagguguuugaguagggauuuugaucucguucuuuaaguagaguguuua         -      u        uucgu       u 

>mtr-MIR2622 (-21.40)   [mtr-miR2622:3-24]

a     U   -CC   G       A  u  --g      --   gg 
 uUUUG GUG   AUC UGAACUU au ua   uauuua  guc  u
 ||||| |||   ||| ||||||| || ||   ||||||  |||   
 aaaac cac   uag gcuugga ug au   auagau  cag  a
a     -   cau   g       a  u  aua      aa   aa 

>mtr-MIR2623 (-42.40)   [mtr-miR2623:19-39]

a      aau     c   C        U    U  A       auuu  - cu       a 
 uuaaca   aaaua cuU GGCUGUAC GUCC UC UGaacaa    gg c  ucuaaac a
 ||||||   ||||| ||| |||||||| |||| || |||||||    || |  ||||||| a
 aauugu   uuuau gaa ccgaugug cagg ag auuuguu    uc g  agauuug u
g      -au     u   u        c    u  g       -guu  a au       u 

>mtr-MIR2624a (-20.40)   [mtr-miR2624a:2-22]

uC  AA          CC     u    - ac 
  GA  GACGAGGUUG  GGCUg guga c  a
  ||  ||||||||||  ||||| |||| |   
  cu  uuguucuagc  uugac cacu g  a
--  cc          uc     -    a cu 

>mtr-MIR2624b (-20.40)   [mtr-miR2624b:2-22]

uC  AA          CC     u    - ac 
  GA  GACGAGGUUG  GGCUg guga c  a
  ||  ||||||||||  ||||| |||| |   
  cu  uuguucuagc  uugac cacu g  a
--  cc          uc     -    a cu 

>mtr-MIR2625 (-60.52)   [mtr-miR2625:2-23]

aC              AC  UCCaa     a      caccucauuaauccu      cagca      uuuucauaucguggcacguuccagacuuu 
  CAUCGUGCCACGUU  GA     ucgug cacgau               acgugg     gacaaa                             a
  ||||||||||||||  ||     ||||| ||||||               ||||||     ||||||                              
  guagcacggugcaa  cu     agcac gugcua               ugcacc     cuguuu                             u
--              au  uguag     c      ---------acaacu      -----      cuuaaacggugaccuuuaaaacacggugc 

>mtr-MIR2626 (-51.20)   [mtr-miR2626:21-41]

---acuuauuauuaaauaaaaacAACGUCGGGAUUUAGGGUGUUauaaguuguguugaacuggguuaacaaacucuauguguuuuuuacuuuccugcc        uuuu   uu --u       ua 
                                                                                                  uuuuauuu    guu  g   uuaugcu  c
                                                                                                  ||||||||    |||  |   |||||||  u
                                                                                                  aagguaaa    caa  u   agugcga  g
cugucuaguuccguuuauauugccuacaacuuaaaaucgcacaauuaaucuucaacaagauacacuacaaaguuaaagucuacgugucugucguauac        -uuu   gg ugu       uc 

>mtr-MIR2627 (-47.41)   [mtr-miR2627:76-97]

c           u            -      caac   -------      u 
 cuucggcaguu gcuaccgaaguu uuuagg    cgg       cggcag u
 ||||||||||| |||||||||||| ||||||    |||       ||||||  
 GGAGUCGUCAA UGAUGGCUUUaa aaauuc    guc       gccguc a
a           U            c      --aa   uaaauga      a 

>mtr-MIR2592a (-136.30)   [mtr-miR2592a:215-235]

a                          u  g   c         c               -          gaa                g  c       aau      c  u  c   u   a  a 
 gauaaauucaaaccugccaaacaaca ga uca gcauuucgc cggcauucauguuuu ccuuugaaaa   uaaauuuuuguuaggu ug uuuagau   gguauu aa ug caa gaa ug g
 |||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||||| ||||||||||   |||||||||||||||| || |||||||   |||||| || || ||| ||| || g
 cuauuuaaguuuggacgguUUGUUGU CU AGU CGUAAAgcg gcuguaaguacaaaa ggaaacuuuu   auuuaagaacaaucca ac aaaucua   ccauaa uu ac guu cuu ac u
-                          C  G   U         a               a          aug                -  c       cuu      -  c  a   c   -  u 

>mtr-MIR2592g (-133.80)   [mtr-miR2592g:219-239]

u   aua         c  ca                         c  a            uc            a           gag   u c         u      c     ccaccgaa ug   uu 
 ggg   aauucaaac ug  aaauaacaggacucaagcauuucgc aa caccucauguuu  ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug        u  agg  c
 |||   ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||  |||||||||||| |||||||||||   ||| | ||||||||| |||||| |||||        |  |||   
 ucc   uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaa  ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac        a  ucc  a
-   --a         a  ag                         -  c            ga            a           aua   c -         u      -     -------- gu   ua 

>mtr-MIR2592h (-127.80)   [mtr-miR2592h:216-236]

a     -uuc    u      a    caua                 a        a                 u      c   u  u   - g         a     -          -      a 
 gguaa    aaac ugccaa cggc    acucgagcauuucgucc gcguucau uuuuuccuuugaaaaga uaaauu uug ua gcu g uuuagauga gguau uaagugucaa ggaaug a
 |||||    |||| |||||| ||||    ||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||| || ||| | ||||||||| ||||| |||||||||| |||||| c
 ccauu    uuug acggUU GUUG    UGAGUUCGUAAAgcagg cguaagua gaaaaggaaacuuuucu auuuaa aac au cga c aaaucuacu cuaua guucacgguu cuuugc c
c     uaaa    u      -    -UCC                 g        c                 u      a   c  c   a g         a     a          g      u 

>mtr-MIR2592k (-129.60)   [mtr-miR2592k:217-237]

g  a          c  ca                a        c  a            uc            a           gag   u c         u      c     ccaccgaa ug   uu 
 ag uaauucaaac ug  aaacaacaggacucaa cauuucgc aa caccucauguuu  ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug        u  agg  c
 || |||||||||| ||  |||||||||||||||| |||||||| || ||||||||||||  |||||||||||| |||||||||||   ||| | ||||||||| |||||| |||||        |  |||   
 uc auuaaguuug ac  uUUGUUGUCCUGAGUU GUAAAgcg uu guggaguacaaa  ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac        a  ucc  a
-  c          a  ag                C        -  c            ga            a           aua   c -         u      -     -------- gu   ua 

>mtr-MIR2592l (-151.10)   [mtr-miR2592l:215-235]

g     -u                  cau                  aa                         u      c      u   - g        aa     -          -      a 
 gguaa  ucaaacuugccaaacgac   gacucaagcauuuugccc  cguucauguuuuuccuuugaaaaga uaaauu uuguua gcu g uuuagaug  gguau uaagugucaa ggaaug a
 |||||  ||||||||||||||||||   ||||||||||||||||||  ||||||||||||||||||||||||| |||||| |||||| ||| | ||||||||  ||||| |||||||||| |||||| c
 ccauu  aguuugaacgguUUGUUG   CUGAGUUCGUAAAgcggg  guaaguacaaaaaggaaacuuuucu auuuaa aacaau uga c aaaucuac  ccaua guucacgguu cuuuac a
-     uc                  -UC                  gc                         u      -      c   a g        ca     a          a      u 

>mtr-MIR2592m (-151.10)   [mtr-miR2592m:215-235]

g     -u                  cau                  aa                         u      c      u   - g        aa     -          -      a 
 gguaa  ucaaacuugccaaacgac   gacucaagcauuuugccc  cguucauguuuuuccuuugaaaaga uaaauu uuguua gcu g uuuagaug  gguau uaagugucaa ggaaug a
 |||||  ||||||||||||||||||   ||||||||||||||||||  ||||||||||||||||||||||||| |||||| |||||| ||| | ||||||||  ||||| |||||||||| |||||| c
 ccauu  aguuugaacgguUUGUUG   CUGAGUUCGUAAAgcggg  guaaguacaaaaaggaaacuuuucu auuuaa aacaau uga c aaaucuac  ccaua guucacgguu cuuuac a
-     uc                  -UC                  gc                         u      -      c   a g        ca     a          a      u 

>mtr-MIR2592n (-127.94)   [mtr-miR2592n:216-236]

g     -           c       cau                  a                   a      u   auucuug   u   - g         a     -     g    -      a 
 gguaa uucaaacuugc aagcggc   gacucaagcauuucgccc gcauucauguuuuuccuuu aaaaga uaa       uua gcu g uuuagauga gguau uaagu ccaa agaaug a
 ||||| ||||||||||| |||||||   |||||||||||||||||| ||||||||||||||||||| |||||| |||       ||| ||| | ||||||||| ||||| ||||| |||| |||||| c
 ccauu aaguuugaacg uUUGUUG   CUGAGUUCGUAAAguggg cguaaguauaaaaaggaaa uuuucu auu       aau cga c aaaucuacu cuaua guuca gguu uuuuac c
-     u           u       -UC                  g                   c      u   gaaaaaa   c   a g         a     a     a    g      u 

>mtr-MIR2111a (-77.14)   [mtr-miR2111a:289-309]

auacuuuucaggaaagcggucaaguuaagaauccuaaaaaaaugauuggcaauccaaucuuaauggaauauauuugaagcacaauauaaacuccuaugauga       gac     a  -aag     cucaaguauucuuucuuagauuauuugcucaugcucuuucuuggacucccauuugcuuaauacuacuugca 
                                                                                                      ugcagau   ucuca uc    ccuaa                                                                       a
                                                                                                      |||||||   ||||| ||    |||||                                                                        
                                                                                                      ACGUCUA   agagu ag    ggguu                                                                       u
-----------------------------------------------------------------------------------------gAUUUGGAGUCCU       -AU     -  acua     auauaggaguaaguuguuaacacaaaucacaaccaugauuccuucuacauuaaacuuaggguuccugaggu 

>mtr-MIR2111b (-60.10)   [mtr-miR2111b:140-160]

c   guc       ug a             cu       ca      caaaacugaaaucaacuugauaguuuccauuuucu 
 ugu   uaagccu  g augcagauuaucu  uccuuau  ccaaug                                   a
 |||   |||||||  | |||||||||||||  |||||||  ||||||                                   u
 acg   AUUUGGA  C UACGUCUAAUaga  aggaaug  gguuau                                   u
a   -au       GU C             uu       --      aaagauggcugagguaguacugcuguauaucgaga 

>mtr-MIR2111c (-44.95)   [mtr-miR2111c:20-40]

a      -   -uu  u              C UG         acaacaaau 
 uauugg gau   ga gggaUAAUCUGCAU C  AGGUUUAga         g
 |||||| |||   || |||||||||||||| |  |||||||||          
 guaacc cua   cu cucuauuagacgua g  uccgaaucu         c
c      a   uuc  u              a gu         auauuaaug 

>mtr-MIR2111d (-35.60)   [mtr-miR2111d:113-133]

ggauuacaacaauacuugcauugua     u   ug    u  a    ca  u   uuaau  -     c  aa    cuu 
                         ucuag ccu  ggau ca auua  uu ucc     ac caaua ua  caca   a
                         ||||| |||  |||| || ||||  || |||     || ||||| ||  ||||   u
                         agAUU GGA  CCUA GU UAAU  ga agg     ug guuau au  gugu   u
--------uuaaugcgucgacaaua     U   GU    C  C    ag  u   ---uu  a     -  ag    aau 

>mtr-MIR2111e (-41.80)   [mtr-miR2111e:20-40]

u      --       uua            C        U ua   auau 
 uauugg  guaagga   gaUAAUCUGCAU CUGAGGUU A  aca    u
 ||||||  |||||||   |||||||||||| |||||||| |  |||     
 guaacc  uauuccu   cuauuagacgua gauuccaa u  ugu    u
c      gu       uuc            a        u uc   cgau 

>mtr-MIR2111f (-49.90)   [mtr-miR2111f:20-40]

a      --g      ug            UC UG          -    --a  uu  uca    cuu 
 uauugg   ugggga  ggaUAAUCUGCA  C  AGGUUUAgaa caau   gu  cu   uuuc   a
 ||||||   ||||||  ||||||||||||  |  |||||||||| ||||   ||  ||   ||||    
 guaacu   auuccu  uuuauuagaugu  g  uccgaaucuu guua   cg  ga   aaag   a
c      aca      uu            ua gu          u    aug  uu  -ua    aaa 

>mtr-MIR2628 (-28.60)   [mtr-miR2628:20-39]

a   gacaa     c    CA    A   U             ccccaaccaauacauauuagccacauaagc 
 ggu     cuaag uacu  UGAA GAA GAUGAGUAAuuua                              a
 |||     ||||| ||||  |||| ||| |||||||||||||                              c
 cca     gauuu augg  acuu cuu uuacucguuaaau                              a
a   aaaaa     a    aa    -   -             aaacaccucaguuuuaucaaguacuuauau 

>mtr-MIR2629a (-29.60)   [mtr-miR2629a:2-22]

cAGUUUU                 ----agc  g 
       CCUCGGUAGUUAACUgc       ug u
       |||||||||||||||||       ||  
       ggagccgucaauugacg       ac u
-------                 gcuuaau  c 

>mtr-MIR2629d (-39.00)   [mtr-miR2629d:20-40]

--cucga    uuac         U   C             u  au 
       uagu    ugccgaAGU UUC UCGGUAGUUAACU cc  a
       ||||    ||||||||| ||| ||||||||||||| ||  a
       auca    auggcuuua gag agccgucaauuga gg  u
caguaua    uuaa         c   u             c  cu 

>mtr-MIR2629e (-37.53)   [mtr-miR2629e:21-41]

-        -guu     cgg    U                  ca ucaguuc 
 aagaugca    aauug   aAGU UUCCUCGGUAGUUAACUg  g       c
 ||||||||    |||||   |||| ||||||||||||||||||  |       a
 uuuuaugu    uuaau   uuua agggagccgucgauugac  c       a
g        auau     aag    c                  ag uuaaaau 

>mtr-MIR2629b (-31.60)   [mtr-miR2629b:2-22]

aAGUUU                  agu   uuc 
      UCCUCGGUAGUUAACUgc   cgg   c
      ||||||||||||||||||   |||   a
      gggagccgucaauugacg   gcu   u
-----g                  ---   uaa 

>mtr-MIR2629c (-31.60)   [mtr-miR2629c:2-22]

aAGUUU                  agu   uuc 
      UCCUCGGUAGUUAACUgc   cgg   c
      ||||||||||||||||||   |||   a
      gggagccgucaauugacg   gcu   u
-----g                  ---   uaa 

>mtr-MIR2629f (-44.20)   [mtr-miR2629f:54-74]

c     g  u                 u      ga  a   u 
 aggac ca cggcaguuaacugcuga ggaaac  ug uag u
 ||||| || ||||||||||||||||| ||||||  || |||  
 ucuug gu gccgUCAAUUGAUGGCU CUUUUG  gc guc a
u     -  c                 C      Aa  c   a 

>mtr-MIR2629g (-115.14)   [mtr-miR2629g:236-256]

a   au    ucagcua            aaa          a      a                         uuuaacaccucaugcucuuuauuaaaugcauacguuauaucauuuaauaaagaguaugugg 
 auu  ggaa       caguuaauuauc   gaaaacuucg caguua uugccgcggaguuuuaaaauuaaaa                                                             u
 |||  ||||       ||||||||||||   |||||||||| |||||| |||||||||||||||||||||||||                                                             g
 uag  ccuu       gUCAAUUGAUGG   CUUUUGAagc gucaau gacggcgccucaaaguuuuaauuuu                                                             u
a   cu    ugaaaac            CUC          c      -                         aaauuguguguacguguauagacgguaaauaaauacaauuauaguuuaauuuaauuuaguu 

>mtr-MIR2630a (-113.44)   [mtr-miR2630a:21-41]

-                u                 G             a            cau         aaa       cua      ----------uc         -a  a 
 cccugcaaauauagaa auuUGGUUUUGGUCCUU GUAUUUuguuuua uccuuguaaaau   uucauauug   uuggucc   uaauau            auuuuaguc  uc u
 |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||   |||||||||   |||||||   ||||||            |||||||||  || u
 gggacguuuauauuuu uaaaccaaaaccaggaa cauaaaacaaaau aggaacauuuua   aaguauaac   aaccagg   auuaua            uaaaaucag  ag u
a                u                 g             c            acu         cua       aac      caucuuauaaac         gg  u 

>mtr-MIR2630b (-104.54)   [mtr-miR2630b:21-41]

-     c          u                               a            cau         aaaaug    cua      ----------uc           cgu 
 cucug aaauauaaaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug      gucc   uaauau            auuuuaguccu   u
 ||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||      ||||   ||||||            |||||||||||    
 gagac uuuauauuuu uaaaccaaaaccaggaaccauaaaauaaaau aggaacauuuua   aaguauaac      cagg   auuaua            uaaaaucaggg   u
a     a          u                               c            acu         cuaaaa    aac      caucuuauaaac           agu 

>mtr-MIR2630c (-98.30)   [mtr-miR2630c:21-41]

c    -      a    u                               a            cau         aaa      ccua     ----------  c           cgu 
 cauu caaaua agaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua ucuuuguaaaau   uucauauug   uugguc    uaaua          uu auuuuaguccu   u
 |||| |||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||   ||||||    |||||          || |||||||||||    
 guga guuuau uuuu uaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaac   aaccag    auuau          aa uaaaaucaggg   u
a    c      a    u                               c            ucu         cua      aaac     ccaucuuaua  c           agu 

>mtr-MIR2630w (-107.80)   [mtr-miR2630w:20-40]

a  --g      uaaaaa                                  c         aga           u               gguagaauau  g          c  a 
 cu   caaaua      auuUGGUUUUGGUCCUUGGUAUUUuguuuuaguc uuguaaaau   uucauauugga uuggucuuuguaaua          uu auuuuagucc uc a
 ||   ||||||      |||||||||||||||||||||||||||||||||| |||||||||   ||||||||||| |||||||||||||||          || |||||||||| || a
 gg   guuuau      uaaaccaaaaccaggaaccauaaaacaaaauuag aacauuuua   aaguauaacuu aaccagggauauuau          aa uaaaaucagg ag a
a  uaa      uucuua                                  a         gua           u               ----------  g          -  c 

>mtr-MIR2630x (-123.40)   [mtr-miR2630x:21-41]

c            aaaaaa                            a               a           u                guagaauauu g          c  a 
 ccugcaaauaua      uUGGUUUUGGUCCUUGGUAUUUuguuuu guccuuguaaaauug uucauauugga uuggucuuuguaauau          u auuuuagucc uc a
 ||||||||||||      |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||          | |||||||||| || a
 ggacguuuauau      aaccaaaaccaggaaccauaaaacaaaa uaggaacauuuuagu aaguauaacuu aaccagggauauuaua          a uaaaaucagg ag a
a            cuuaua                            c               a           u                ---------- g          -  u 

>mtr-MIR2630y (-121.40)   [mtr-miR2630y:20-40]

a           a  a                                              a           u      a         guagaauauu g          c  a 
 cugcaaauaua aa auuUGGUUUUGGUCCUUGGUAUUUuguuuuaguccuuguaaaauug uucauauugga uugguc uuguaauau          u auuuuagucc uc a
 ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||          | |||||||||| || a
 gacguuuauau uu uaaaccaaaacuaggaaccauaaaacaaaauuaggaacauuuuagu aaguauaacuu aaccag gauauuaua          a uaaaaucagg ag a
g           c  a                                              a           u      g         ---------- g          -  u 

>mtr-MIR2630d (-106.24)   [mtr-miR2630d:21-41]

-  aua           u                               a           ucau         aaa       cua      ----------uc          -  a 
 cc   caaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua ucuuuguaaaa    uucauauug   uuggucc   uaauau            auuuuagucc uc u
 ||   ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    |||||||||   |||||||   ||||||            |||||||||| || u
 gg   guuuauaucuu uaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuu    aaguauaac   aaccagg   auuaua            uaaaaucagg ag u
a  aac           u                               c           cacu         cua       aac      caucuuauaaac          g  u 

>mtr-MIR2630e (-108.24)   [mtr-miR2630e:21-41]

-  c          u  u                                            -c    c      aaa       cua      ----------uc           cgu 
 cc ugcaaauaua aa auuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaau  auuu auauug   uuggucc   uaauau            auuuuaguccu   u
 || |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||   |||||||   ||||||            |||||||||||    
 gg acguuuauau uu uaaaccaaaaccaggaaccauaaaacaaaauuaggaacauuuua  uaaa uauaac   aaccagg   auuaua            uaaaaucaggg   u
a  a          u  u                                            ac    -      cua       aac      caucuuauaaac           agu 

>mtr-MIR2630f (-108.24)   [mtr-miR2630f:21-41]

-  c          u  u                                            -c    c      aaa       cua      ----------uc           cgu 
 cc ugcaaauaua aa auuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaau  auuu auauug   uuggucc   uaauau            auuuuaguccu   u
 || |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||   |||||||   ||||||            |||||||||||    
 gg acguuuauau uu uaaaccaaaaccaggaaccauaaaacaaaauuaggaacauuuua  uaaa uauaac   aaccagg   auuaua            uaaaaucaggg   u
a  a          u  u                                            ac    -      cua       aac      caucuuauaaac           agu 

>mtr-MIR2630g (-93.30)   [mtr-miR2630g:21-41]

-                u                 G           c a  c   u     cau         aaa       cua      ucauuuuaguccucauuuuga 
 cccugcaaauauagaa auuUGGUUUUGGUCCUU GUAUUUuguuu a uc uug aaaau   uucauauug   uuggucc   uaauau                     g
 |||||||||||||||| ||||||||||||||||| ||||||||||| | || ||| |||||   |||||||||   |||||||   ||||||                      
 gggacguuuauauuuu uaaaccaaaaccaggag cauaaaauaaa u ag aac uuuua   aaguauaac   aaccagg   auuaua                     g
a                u                 a           a c  a   u     acu         cua       aac      cauuuuauaaacuaaaaacag 

>mtr-MIR2630h (-109.54)   [mtr-miR2630h:21-41]

- uc         ag  u                               a            cau         aaa       cua      ----------uc          -  a 
 c  ugcaaauau  aa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uc u
 |  |||||||||  || ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||   |||||||   ||||||            |||||||||| || u
 g  acguuuaua  uu uaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaac   aaccagg   auuaua            uaaaaucagg ag u
a ga         cu  u                               c            acu         cua       aac      caucuuauaaac          g  u 

>mtr-MIR2630i (-103.50)   [mtr-miR2630i:21-41]

c           a   u                               a            cau         aaauugguccauauaauauucauuuuaguccucauauuga 
 ccugcaaauau gaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug                                        g
 ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||                                         
 ggacguuuaua uuu uaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaac                                        g
a           a   u                               c            acu         cuaaaacaagaacaucauacaucuuauaaacuaaaaucug 

>mtr-MIR2630j (-101.70)   [mtr-miR2630j:21-41]

-  cu            u          -    C                a            cauu        aaa       cuauaauauucauuuuaguccucauuuuga 
 cc  gcaaauauagaa auuUGGUUUU GGUC UUGGUAUUUuguuuua uccuuguaaaau    ucauauug   uuggucc                              g
 ||  |||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||    ||||||||   |||||||                               
 gg  cguuuauauuuu uaaaccaaaa ccag aaccauaaaacaaaau aggaacauuuua    aguauaac   aaccagg                              g
a  uu            u          a    u                c            accu        cua       aacauuauacaucuuauaaaauaaaaucag 

>mtr-MIR2630k (-102.64)   [mtr-miR2630k:21-41]

-  c             u                               a  c         cau         aaa       cua      ----------uc          -  a 
 cc ugcaaauauaaaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uc uuguaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uc u
 || ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||   |||||||||   |||||||   ||||||            |||||||||| || u
 gg auguuuauauuuu uaaacuaaaaccaggagccauaaaacaaaau ag aacauuuua   aaguauaac   aaccagg   auuaua            uaaaaucagg ag u
a  a             u                               c  a         acu         cua       aac      caucuuauaaac          g  u 

>mtr-MIR2630l (-111.04)   [mtr-miR2630l:21-41]

-                u                             uaauc          -c    c        a         a      ----------uc           cau 
 cucugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuu     cuuguaaaau  auuu auauugaa uugguccuu uaauau            auuuuaguccu   u
 |||||||||||||||| |||||||||||||||||||||||||||||     ||||||||||  |||| |||||||| ||||||||| ||||||            |||||||||||    
 gggacguuuauauuuu uaaaccaaaaccaggaaccauaaaacaaa     gaacauuuua  uaaa uauaacuu aaccaggaa auuaua            uaaaaucagga   u
a                u                             uucaa          ac    -        a         c      caucuuauaaac           agg 

>mtr-MIR2630m (-119.70)   [mtr-miR2630m:21-41]

-    -                                            a            cau        aaaa       cua      -  ---------          -  a 
 uccu gcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauu    uuggucc   uaauau uc         auuuuagucc uc u
 |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||    |||||||   |||||| ||         |||||||||| || u
 agga cguuuauaucuuauaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaa    aaccagg   auuaua ag         uaaaaucagg ag u
c    a                                            c            acu        ccua       aac      c  cuuauaaac          g  u 

>mtr-MIR2630n (-110.64)   [mtr-miR2630n:21-41]

-                               C                a            cau         aaauc     cua      ----------uc         -c  a 
 cccugcaaauauagaauauuUGGUUUUGGUC UUGGUAUUUuguuuua uccuuguaaaau   uucauauug     ggucc   uaauau            auuuuaguc  uc u
 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||   |||||||||     |||||   ||||||            |||||||||  || u
 gggacguuuauauuuuauaaaccaaaaccag aaccauaaaacaaaau aggaacauuuua   aaguauaac     ccagg   auuaua            uaaaaucag  ag u
a                               a                c            acu         cuaaa     aac      caucuuauaaac         ua  u 

>mtr-MIR2630o (-106.44)   [mtr-miR2630o:21-41]

c               u                               a     a      cau         aaa       cua      ----------uc          -  a 
 ccugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuu uaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uc u
 ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||   |||||||||   |||||||   ||||||            |||||||||| || u
 ggacguuuauauuuu uaaaccaaaacuaggaacuauaaaacaaaau aggaa auuuua   aaguauaac   aaccagg   auuaua            uaaaaucagg ag u
a               u                               c     c      auu         cua       aac      caucuuauaaac          g  u 

>mtr-MIR2630p (-105.50)   [mtr-miR2630p:21-41]

-  cu            u              C                a            cauu        aaa       cuauaauauucauuuuaguccucauuuuga 
 cc  gcaaauauagaa auuUGGUUUUGGUC UUGGUAUUUuguuuua uccuuguaaaau    ucauauug   uuggucc                              g
 ||  |||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||    ||||||||   |||||||                               
 gg  cguuuauauuuu uaaaccaaaaccag aaccauaaaacaaaau aggaacauuuua    aguauaac   aaccagg                              g
a  uu            u              u                c            accu        cua       aacauuauacaucuuauaaaauaaaaucag 

>mtr-MIR2630q (-110.14)   [mtr-miR2630q:21-41]

-  a          u  u                               a            cau         aaa       cua      ----------uc           cgu 
 cc ugcaaauaua aa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug   uuggucc   uaauau            auuuuaguccu   u
 || |||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||   |||||||   ||||||            |||||||||||    
 gg acguuuauau uu uaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaac   aaccagg   auuaua            uaaaaucaggg   u
g  -          u  u                               c            acu         cua       aac      caucuuauaaac           agu 

>mtr-MIR2630r (-113.14)   [mtr-miR2630r:21-41]

-                u                               a  c         cau           a       cua      ----------uc          -  a 
 cccugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uc uuguaaaau   uucauguugaa uuggucc   uaauau            auuuuagucu uc u
 |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||   ||||||||||| |||||||   ||||||            |||||||||| || u
 gggacguuuauauuuu uaaacuaaaaccaggaaccauaaaacaaaau ag aacauuuua   aaguauaacuu aaccagg   auuaua            uaaaaucagg ag u
a                u                               c  a         acu           a       aac      caucuuauaaac          g  u 

>mtr-MIR2630s (-107.54)   [mtr-miR2630s:21-41]

-                u   U                A          a            cau        aaaa       cua      ----------uc          -  a 
 cccugcaaauauagaa auu GGUUUUGGUCCUUGGU UUUuguuuua uccuuguaaaau   uucauauu    uuggucc   uaauau            auuuuaguuc uc u
 |||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||   ||||||||    |||||||   ||||||            |||||||||| || u
 gggacguuuauauuuu uaa ccaaaaccaggaacca aaaacaaaau aggaacauuuua   aaguauaa    aaccagg   auuaua            uaaaaucagg ag u
a                u   c                c          c            acu        gcua       aac      caucuuauaaau          g  u 

>mtr-MIR2630t (-97.54)   [mtr-miR2630t:21-41]

-         a      u   U        U    G             a            cau   u     aaa       cua      ----------uc           cgu 
 cccugcaaa auagaa auu GGUUUUGG CCUU GUAUUUuguuuua uccuuguaaaau   uuc uauug   uuggucc   uaauau            auuuuaguccu   u
 ||||||||| |||||| ||| |||||||| |||| ||||||||||||| ||||||||||||   ||| |||||   |||||||   ||||||            |||||||||||    
 gggacguuu uauuuu uaa ccaaaacc ggaa cauaaaacaaaau aggaacauuuua   aag auaac   aaccagg   auuaua            uaaaaucaggg   u
a         a      u   c        u    a             a            acu   u     cua       aac      caucuuauaaac           agu 

>mtr-MIR2630u (-106.10)   [mtr-miR2630u:21-41]

-  a             u                               a            -cauu        aaa      ccuauaauauucauuuuaguccucguuuuga 
 cc ugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau     ucauauug   uugguc                               g
 || ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||     ||||||||   ||||||                                
 gg acguuuauauuuu uaaaccaaaaccaggaaucauaaaacaaaau aggaacauuuua     aguauaac   aaccag                               g
g  -             u                               c            aauuu        cua      aaacauuauacaucuuauaaacuaaaaucag 

>mtr-MIR2630v (-97.94)   [mtr-miR2630v:21-41]

c  -ua           u        U                      a  a         cau         aaa       cua      ----------uc          -  a 
 cc   caaauauagaa auuUGGUU UGGUCCUUGGUAUUUuguuuua uc uuguaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uc u
 ||   ||||||||||| |||||||| |||||||||||||||||||||| || |||||||||   |||||||||   |||||||   ||||||            |||||||||| || u
 gg   guuuauauuuu uaaaccaa accaggaaccauaaaacaaaau ag aacauuuua   aaguauaac   aaccagg   auuaua            uaaaaucagg ag u
c  uac           u        u                      c  g         acu         cua       aac      caucuuauaaac          g  u 

>mtr-MIR2631 (-107.26)   [mtr-miR2631:21-41]

-              c            C  C               acu        agaguuugaaguuaaaagauauuucguccacacuuuugguaaauaaaauuuaauuauuaaaacugucaaugauaaaaaaaaauucuuuuucuuaaaaaaaaa 
 ugugccacguggac aaucaUGACACG CA GUGGCACACUagaag   aaauuuug                                                                                                      a
 |||||||||||||| |||||||||||| || |||||||||||||||   ||||||||                                                                                                       
 acacggugcaccug uuaguauugugc gu caccgugugauuuuu   uuuaaaau                                                                                                      a
c              -            u  a               -gu        auuaacuuuauuuauuuaauuuuauuccguuuaagauaccauguagguuuuuaaacucacauggucaugugguuuaacaauuuaauuauuaauuuacucaaa 

>mtr-MIR2632a (-133.00)   [mtr-miR2632a:21-42]

-                 a  C                             c                                 -    auc 
 aggucauuugaauuuuc uc CUGAAGUUACUAAUCCUUCCAaucugccc ugcaaauauuaaucauuugacuuuugguccuaa uuac   u
 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||   g
 uccgguaaacuuaaaag ag gacuucaaugauuaggaagguuagacggg acguuuauaauuaguaaacugaaaaccaggauu aaug   a
a                 c  c                             a                                 c    auu 

>mtr-MIR2632b (-105.17)   [mtr-miR2632b:21-42]

a   -             a  C                   C         c                            a    cagcccaccuca 
 agu cauuugaauuuuc uc CUGAAGUUACUAAUCCUUC Aaucugccc ugcaaauauuaaucauuugacuuuuggu auga            g
 ||| ||||||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||             
 uca guaaacuuaaaag ag gacuucaaugauuaggaag uuagacggg acguuuauaauuaguaaauugaaaacca uauu            c
a   a             c  a                   a         -                            g    aauccaaaaaaa 

>mtr-MIR2632c (-130.31)   [mtr-miR2632c:21-42]

-agac            c                      C    a        c                       aucauaauuacaucugauuaguaacuucagugaugaaaauucaagugaccuauauuuggagggaugaaagaccuauuuaagc 
     cauuugaauuuu gucCCUGAAGUUACUAAUCCUU CAau ugccccug aaauauuaaucauuugacuuuug                                                                                  a
     |||||||||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||                                                                                  a
     guaaacuuaaaa cagggacuucaaugauuaggaa guua acgggggc uuuauaauuaguaaacugaaaac                                                                                  a
aucca            u                      a    g        a                       gaggauuaauccaaaaaaaccacuccacccaacaguaaucgcugcaccacggguacaccguucacuacuaacccgauccacc 

>mtr-MIR2633 (-44.90)   [mtr-miR2633:82-102]

u   c     aau       u     u  u        g    cu u     -      u 
 uga uaaac   guuaugu agucu ga caaagugu aucu  g agucc cuaacu c
 ||| |||||   ||||||| ||||| || |||||||| ||||  | ||||| |||||| u
 acu auuug   caauacA UUAGA CU GUUUUACA Uaga  c uuagg gauugg a
u   u     ---       C     C  C        G    au -     c      a 

>mtr-MIR2634 (-34.40)   [mtr-miR2634:67-87]

a   ua  c     ac  u         c     u  a    ---au   uu 
 uuc  gc augau  ga caacaaacu agaau ga gagu     ggc  a
 |||  || |||||  || ||||||||| ||||| || ||||     |||   
 aag  cg uacua  CU GUUGUUUGA UCUUA UU cuca     ucg  a
a   gc  a     ca  C         C     U  c    cagau   ua 

>mtr-MIR2635 (-26.65)   [mtr-miR2635:17-36]

a    uua  -         A   UC   G   C   aauauaaagagucacacacaaagaacggucaaaagagaaa 
 aaua   ga uuuaauAUU UUG  AAC UGA UAG                                        u
 ||||   || ||||||||| |||  ||| ||| |||                                        a
 uuau   cu aaauuauaa aac  uug auu auc                                        u
g    -ug  c         -   ga   -   a   acaauaaaugauuugcguauggauauauucagugugaaua 

>mtr-MIR2636 (-49.10)   [mtr-miR2636:81-101]

g         g     c   u    aaa               -   g      cuaa  ua 
 uggguacaa gaauc acu uauu   cacacuaaccaaaaa acu uaauuu    ga  u
 ||||||||| ||||| ||| ||||   ||||||||||||||| ||| ||||||    ||   
 acccauguu cuuag uga AUAA   GUGUGAUUGGUUUuu ugg auuaaa    cu  g
-         a     a   U    GUC               g   a      ----  uu 

>mtr-MIR2637 (-28.35)   [mtr-miR2637:21-41]

aauuauuauauucacuuua            C        ----      a  g   aacaacuuuu 
                   uAAAUACUUCCU UGAUCACU    Guuaua ac aaa          u
                   |||||||||||| ||||||||    |||||| || |||           
                   auuuaugaggga gcuaguga    uaguau ug uuu          a
--------cuaaccauaua            a        uaua      c  g   auauaguuaa 

>mtr-MIR2638a (-113.30)   [mtr-miR2638a:230-250]

g         a                                  cuuu            guuuuuuuuugcugagaugggcuaucauuagcgacguggugccuauguggcaagugaugauuggacgaggugg 
 uuacuaauc uuccaaucugccacugcaaauauuaaucauuuga    ugguccuaauua                                                                         u
 ||||||||| ||||||||||||||||||||||||||||||||||    ||||||||||||                                                                          
 aaugauuag aagguuagaCGGUGACGUUUAUAAUUAGUAaacu    aucaggauuaau                                                                         u
-         g                                  uuuu            guagacuaaucauugaaaucccuacuuuuaaguuuacuauauauaaacgucccuguuuucuggauaaauucgg 

>mtr-MIR2638b (-101.80)   [mtr-miR2638b:230-250]

g         c                                  aaaaua          caucugauuaguaacuuuagggaugaaaauucaaaugauauauauuugcagggacaaaagaccuauuuaagcc 
 uuacuaauc uuccaaucugccacugcaaauauuaaucauuuga      guccuaauua                                                                         a
 ||||||||| ||||||||||||||||||||||||||||||||||      ||||||||||                                                                          
 aaugauuag aagguuagaCGGUGACGUUUAUAAUUAGUAaacu      caggauuaau                                                                         a
-         u                                  gaaaac          caaaaaaaaacgacucuacccgauaguaaucgcugcaccacggauacaccguucacuacuaaccugcuccacc 

>mtr-MIR2639 (-32.80)   [mtr-miR2639:62-82]

c  a   ugaauu          -  ac    uu        g     a 
 ag ccu      uaucaaggug ug  aguc  acugaauu ccaau c
 || |||      |||||||||| ||  ||||  |||||||| |||||  
 uc ggg      auaGUUCCAC GC  UCGG  UGAUuuaa gguua a
a  a   -ugaau          U  AU    -C        a     u 

>mtr-MIR2640a (-64.02)   [mtr-miR2640a:2-23]

a   C    CG      GA  A    uaaa      uuc     uacuauuguugcaaaauauaacuuucuuguacugaaauuaguuaggcuuaggcggcauaaaccuuuuucuacacauuugacucaaugaauuuuuuaagggauuu 
 UUC UUGC  GAGCUG  CU Cagg    aguuaa   agaga                                                                                                        a
 ||| ||||  ||||||  || ||||    ||||||   |||||                                                                                                        a
 aag aacg  uuugau  gg gucu    ucaauu   ucucu                                                                                                        a
-   a    uu      aa  a    ----      ---     cuccgcacgccgaccgaugagugaucacauuaguauuaagauccauucaugagaugaauaaagaguuauaaccguacauuaaguucuuuuaucuuaccaacgag 

>mtr-MIR2640b (-64.02)   [mtr-miR2640b:2-23]

a   C    CG      GA  A    uaaa      uuc     uacuauuguugcaaaauauaacuuucuuguacugaaauuaguuaggcuuaggcggcauaaaccuuuuucuacacauuugacucaaugaauuuuuuaagggauuu 
 UUC UUGC  GAGCUG  CU Cagg    aguuaa   agaga                                                                                                        a
 ||| ||||  ||||||  || ||||    ||||||   |||||                                                                                                        a
 aag aacg  uuugau  gg gucu    ucaauu   ucucu                                                                                                        a
-   a    uu      aa  a    ----      ---     cuccgcacgccgaccgaugagugaucacauuaguauuaagauccauucaugagaugaauaaagaguuauaaccguacauuaaguucuuuuaucuuaccaacgag 

>mtr-MIR2641 (-53.66)   [mtr-miR2641:2-21]

uGUUUGAUCCUUUACGUUUAUucuucguuuuagguaggagauguaaauuucuucaugcaaauccucgugaaaagaaaaaaaaaaaaacaucagcauggaaggaacauagaaaa      u    -    g   g   accccu 
                                                                                                                 ggagaa aaga ccaa uug auc      a
                                                                                                                 |||||| |||| |||| ||| |||      a
                                                                                                                 ucucuu uucu gguu aac uag      a
-------------------------------------------------------uugggaaaguaaguagguacuuuuuuaguuaguguuaucuuuagcuaacauggaauac      -    a    g   -   aaaaaa 

>mtr-MIR2642 (-37.60)   [mtr-miR2642:21-41]

-              a        A       C    -C        
 uuugauugguuaaa uuuacAUG GUUUCAU AAAU  AUGUggu 
 |||||||||||||| |||||||| ||||||| ||||  |||||| u
 aaacuaaccaauuu aaguguau cagagug uuua  uauaccc 
g              c        g       u    aa        

>mtr-MIR2643 (-58.90)   [mtr-miR2643:20-40]

a     uugc   -u     UU     UC     U  G G     ccuu    ua   a    augaauugggguccaagggaagggccuaaagguccaaaacaaaaggauuuuuggaaag 
 aauag    ugc  gaaua  UGGGA  AGAAA UA A Agcca    ggcu  acu ugag                                                          g
 |||||    |||  |||||  |||||  ||||| || | |||||    ||||  ||| ||||                                                          a
 uuauc    aug  uuugu  auucu  uuuuu au u uuggu    ucgg  uga acuu                                                          g
a     ccau   uu     -u     uu     u  g g     ----    uc   -    auaauuuguuuuccaguuagugcccacuuuuuguaguauucuugcugaguggcaagca 

>mtr-MIR2644a (-75.55)   [mtr-miR2644a:184-204]

u       uug    agug        u ug           caa         gguuacuagcagcagcgaaggguauuuagguuauugaaauaucaucaaaaaauaaac 
 cgugucg   acca    gauacacc u  aucugaagugu   ugcuacaua                                                         u
 |||||||   ||||    |||||||| |  |||||||||||   |||||||||                                                          
 gcacagc   uggu    cUGUGUGG A  UAGACUUCACa   acgauguau                                                         u
u       cua    ----        U GU           acc         uagaauuacauaguaagauuacacuuugagaauucucugaaaccacaaaacaacugu 

>mtr-MIR2644b (-75.75)   [mtr-miR2644b:183-203]

u       uug    agug        u ug           caa         gguuacuagcagcagcgaaggguauuuagguuauugaaauaucaucaaaaauaaac 
 cgugucg   acca    gauacacc u  aucugaagugu   ugcuacaua                                                        u
 |||||||   ||||    |||||||| |  |||||||||||   |||||||||                                                        u
 gcacagc   uggu    cUGUGUGG A  UAGACUUCACa   acgauguau                                                        u
u       cua    ----        U GU           acc         uagaauuacauaguaagauuacacuuugagaauucucugaaaccacaaaacaacug 

>mtr-MIR2645 (-52.90)   [mtr-miR2645:2-22]

--------------------------------------------------aUUUCUAGAGAUGAGCAUAUAUugaag      --g     -   g      ac     ---  cu u uug       cua 
                                                                             aauuau   gagua gau aaguuu  aaagu   uc  c c   gauugga   a
                                                                             ||||||   ||||| ||| ||||||  |||||   ||  | |   |||||||   c
                                                                             uugaua   uuuau cua uucaaa  uuucg   ag  g g   uuaacuu   u
guuuuuacuuggguuaugaaauuaacguucaccauccgguaaccguauuacaucauacgguaauugguugggaagua      agu     a   g      -c     aaa  cu u uua       cuc 

>mtr-MIR2646a (-156.85)   [mtr-miR2646a:21-41]

-                     A            A                 u                   a         ccau           -ua                        --------------------      c  a 
 uuuucugauuuuauggucccC UGACAUUUAGUG UGAUGUgucuguuuuuu aucaauuaaugugugccac uguguaauu    uuuuuaaaaaa   aaaaaaaugguauuuuucagauuu                    ccagca ua a
 ||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||    |||||||||||   ||||||||||||||||||||||||                    |||||| || u
 gaaagacuaaaauaccagggg acuguaaauuac acuacacagacaaaaaa uaguuaauuacacacggug acacauuaa    aaaaauuuuuu   uuuuuuuaccauaaaaagucuaaa                    gguugu au u
g                     c            g                 -                   c         -aau           uua                        acucucuuccuccgugcacu      u  c 

>mtr-MIR2646b (-130.72)   [mtr-miR2646b:5-25]

g                 A                 u                             cc       -a              g                ---------ca    uaaauu   u 
 uccCAUGACAUUUAGUG UGAUGUgucuguuuuuu aucaauuaaugugugccacguguguaauu  auuuuuu  aaaaauaaaaaaau guauuuuucagauuuu           gcac      cua u
 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  |||||||  |||||||||||||| ||||||||||||||||           ||||      |||  
 gggguacuguaaauuac acuacacagacaaaaaa uaguuaauuacacacgguguacacauuaa  uaaaaaa  uuuuuauuuuuuua cauaaaaagucuaaaa           cgug      ggu g
a                 g                 -                             aa       aa              a                cucucuuccuc    --cacu   u 

>mtr-MIR2647a (-57.80)   [mtr-miR2647a:2-22]

----------------------------------------------------------------------------aAUUCACGGGGACGAACCUCCUucg     ag --u   u     cu    aua    ua 
                                                                                                     uugaa  u   ugc uuauu  uuug   uauc  u
                                                                                                     |||||  |   ||| |||||  ||||   ||||  c
                                                                                                     aacuu  a   acg aauga  gaac   auag  c
aaguuguccccguugggagggagguagggagucauaguugaauuuccaacauggaggacaccucagggcaguugccuuuaagacuacuuccgguucgaacu     ga uuu   u     ag    ---    ua 

>mtr-MIR2647b (-57.80)   [mtr-miR2647b:2-22]

----------------------------------------------------------------------------aAUUCACGGGGACGAACCUCCUucg     ag --u   u     cu    aua    ua 
                                                                                                     uugaa  u   ugc uuauu  uuug   uauc  u
                                                                                                     |||||  |   ||| |||||  ||||   ||||  c
                                                                                                     aacuu  a   acg aauga  gaac   auag  c
aaguuguccccguugggagggagguagggagucauaguugaauuuccaacauggaggacaccucagggcaguugccuuuaagacuacuuccgguucgaacu     ga uuu   u     ag    ---    ua 

>mtr-MIR2647c (-57.80)   [mtr-miR2647c:2-22]

----------------------------------------------------------------------------aAUUCACGGGGACGAACCUCCUucg     ag --u   u     cu    aua    ua 
                                                                                                     uugaa  u   ugc uuauu  uuug   uauc  u
                                                                                                     |||||  |   ||| |||||  ||||   ||||  c
                                                                                                     aacuu  a   acg aauga  gaac   auag  c
aaguuguccccguugggagggagguagggagucauaguugaauuuccaacauggaggacaccucagggcaguugccuuuaagacuacuuccgguucgaacu     ga uuu   u     ag    ---    ua 

>mtr-MIR2648 (-44.56)   [mtr-miR2648:19-39]

c   u   g     u       -      GA  A     Uu  cucugaauuaauucaaaagcuacau 
 ucu ggu uaugu ugaUAGC CAAUGG  AU ACAGA  ca                         u
 ||| ||| ||||| ||||||| ||||||  || |||||  ||                         a
 agg uca auaca gcuauug guuacc  ua ugucu  gu                         c
u   u   g     u       u      uc  c     ug  caaacauuuucgaugcuuuacauua 

>mtr-MIR2649 (-42.10)   [mtr-miR2649:69-89]

a   -uga ug a    ag gg    a                     c  a 
 gcu    u  u agca  u  auaa uggcaccuuuuguaagcucuu au u
 |||    |  | ||||  |  |||| ||||||||||||||||||||| ||  
 ugg    a  a uugU  G  UAUU ACCGUGGAAAacauucgagaa ua u
a   uaua gu a    GU AG    A                     a  c 

>mtr-MIR2650 (-65.40)   [mtr-miR2650:17-38]

a  cu   u     c  AC             CA  C  u                 a       a              g  uuuua 
 gu  caa uauuu aA  UUAAAUAUGUUUU  GU Cc acauuuugcgugacuuu aagaaua ucuuuauauuuuag ga     a
 ||  ||| ||||| ||  |||||||||||||  || || ||||||||||||||||| ||||||| |||||||||||||| ||      
 ca  guu auaaa uu  aauuuauacaaaa  ca gg uguaaaacgcacugaaa uuuuuau aggaauguaaaguu uu     a
c  ag   u     a  cc             ag  a  c                 a       c              a  uacaa 

>mtr-MIR2651 (-86.49)   [mtr-miR2651:108-128]

a      ug                                                  ----ccuuuu    uu 
 uugggg  caauauaauuuaaugcaggcauacuagucaaauuauuugguuuaauuucc          gagg  u
 ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||          ||||   
 aacccc  guuauguuaaaUUACGUCCGUAUGGUUAGUUUaauaaacuaaguuaaagg          uucu  u
-      gu                                                  uuuacauguu    uu 

>mtr-MIR2652a (-121.60)   [mtr-miR2652a:208-228]

g                                              u    a     --g    acaacuaacaaaaaccauuuccacagcaaaaugguuuugacauaauuuuaugcagggug 
 cgauuauggugcauaaggaaauucuuaugcacccugcauaaaucca aaau guuuu   gagu                                                           c
 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||   ||||                                                            
 gcuaauaccacguauuccuUUAGGAAUACGUGGGACGUAUuuaggu uuua caaag   cuca                                                           u
-                                              c    c     aca    acaugagguuuugguaaucuacaugaauuaccaaaggucgugggacguauuccuaaagg 

>mtr-MIR2652b (-119.84)   [mtr-miR2652b:196-216]

g                                           c             --g    aca   c      accauuuccacaucaaaaugauuuuggcauaauugggcug 
 cgguuauggugcauaaggaaaucuuuaugcacccugcauaaau cagaaaugguuuu   gagu   acu acagaa                                        g
 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||   ||| ||||||                                        g
 gccaauaccacguauuccuUUAGGAAUACGUGGGACGUAUuua guuuuuaccaaaa   cuca   uga uguuuu                                        a
-                                           a             aca    gca   -      aguaaucuacaugaauuaccaaaggucgugagacguauuu 

>mtr-MIR2652c (-113.00)   [mtr-miR2652c:188-208]

g  gu            c                                       -  -    aca     caaaaaccauuuucccaauaaaaugguuuuugcauaauuuu 
 cg  uaugguguauaa gaaauccuuaugcacccugcauaaauucagaaaugguuu ug gagu   acuua                                         a
 ||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||   |||||                                          
 gc  auaucacguauu cuUUAGGAAUACGUGGGACGUAUuuaggucuuuaccaaa ac cuca   ugaau                                         u
-  ug            c                                       u  a    aca     uacgaaaggucaugagacguauuccuaaaggucguggaacg 

>mtr-MIR2652d (-101.10)   [mtr-miR2652d:188-208]

g  ac   a   c    g                          c           uaugugaguuguacuuaaugcuuuccaguacucugcauaaggauuuccagcaccuug 
 cg  uau gug auaa gaaauccuuaugcacccugcauaaau cagaaaugguu                                                         c
 ||  ||| ||| |||| |||||||||||||||||||||||||| |||||||||||                                                          
 gc  aua cac uauu cuUUAGGAAUACGUGGGACGUAUuua gucuuuaccaa                                                         a
-  ca   c   a    g                          a           aaccucauguugaauguuuuugguaaaaggguuauuuuaccaaaaacguauuaaaau 

>mtr-MIR2652e (-116.50)   [mtr-miR2652e:208-228]

g  a                                         cagaaaugauuuuggaguacaacucacauaaaucauuuccacagcaaaaugguuuugacauaauuuuaugcagggugc 
 cg uuauggugcauaaggaaauccuuaugcacccugcauaaauc                                                                              u
 || |||||||||||||||||||||||||||||||||||||||||                                                                               
 gc aauaccacguauucuuUUAGGAAUACGUGGGACGUAUuuag                                                                              g
-  c                                         aucuuuaccaaagacacucaacaugaaguuuugguaaucuacaugaaguaccaaaagucgugguacguauuccuaaag 

>mtr-MIR2652f (-61.50)   [mtr-miR2652f:164-184]

u uu   aau          -      aa  aaaa      aguacaucuaaugauuuuggaguacaacucacagaaaccauuuccacugcaaa 
 g  uuc   ugcacccugc uggauc  ag    ccauua                                                     a
 |  |||   |||||||||| ||||||  ||    ||||||                                                      
 c  AGG   ACGUGGGACG AUuuag  uc    gguaau                                                     u
c UU   AAU          U      gg  ---g      acgguuuugauaaaacgucacuuuuaucaaaaacacucaaccugagauuuugg 

>mtr-MIR2652g (-104.80)   [mtr-miR2652g:195-215]

u     c                                    cc       a   c  u   c    -   -  -        --agau    uu        cc    ---cucu  auaa 
 gguua ggugcauaaggaaauucuuaugcacccugcauaaau  agaaaug uuu ug gag ugua cuc ca aaaccauu      guaa  aaugguuu  agca       gc    a
 ||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||| || ||| |||| ||| || ||||||||      ||||  ||||||||  ||||       ||     
 ccaau ccacguauucuuUUAGGAAUACGUGGGACGUAUuua  ucuuuac aaa ac cuc auau gag gu uuugguaa      cguu  uuaccaaa  ucgu       cg    u
g     a                                    aa       c   -  -   -    u   u  c        agguau    --        -a    auuaacc  accu 

>mtr-MIR2652h (-116.34)   [mtr-miR2652h:209-229]

u                     a                        a      -a     -    acaacacacagaaaccauuuccauagcaaaauaguuuuggcauaauuuuauguaaggug 
 gcgguuaugguguauaaggaa ucuuuaugcacccugcauaaauuc gaaaug  uuuug gagu                                                           c
 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||||| ||||                                                            
 cgccaauaccacguauuccUU AGGAAUACGUGGGACGUAUuuagg cuuuac  aagac cuca                                                           u
-                     -                        c      ca     a    acaugaaguuuugguaaucuacaugaauuaccaaaggucgugggacguauuccuaaaag 

>mtr-MIR2652i (-124.20)   [mtr-miR2652i:196-216]

g                 a                         c             --g    acaacucacagaaaccauuuccacaguaaaaugguuuuggcauaauuggguug 
 cgguuauggugcauaag aaauccuuaugcacccugcauaaau cagaaaugguuuu   gagu                                                     g
 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||   ||||                                                      
 gccaauaccacguauuc uUUAGGAAUACGUGGGACGUAUuua gucuuuaccaaaa   cuca                                                     g
-                 c                         a             aca    acaugaaguuuugguaaucuacaugaauuacuaaaggucguggaacguauuua 

>mtr-MIR2652j (-94.60)   [mtr-miR2652j:187-207]

a  a      uuuu   -    a                                       --g    acaauucagaaaccauuuccacagcaaaaugguuuugauauaauuuu 
 gc ugguuu    ugu ugag aaauccuuaugcacucugcauaaauccagaaaugguuuu   gagu                                               a
 || ||||||    ||| |||| |||||||||||||||||||||||||||||||||||||||   ||||                                                
 cg gccaaa    acg auuc uUUAGGAAUACGUGGGACGUAUuuaggucuuuacuaaaa   cuca                                               u
-  c      ----   u    c                                       aca    acauaaaguuuuaguaaucuacaugaauuaucaaaugucgugggacg 

>mtr-MIR2652k (-94.70)   [mtr-miR2652k:193-213]

-gguuacc                         -            a            ---ag    a   a  uagaccauuuucacaucaaaauaguuuuggcauaauuggguug 
        gugcauaaggaaauccuuaugcacu ugcauaaaucua aaaugguuuugg     ugua cuc ca                                           g
        ||||||||||||||||||||||||| |||||||||||| ||||||||||||     |||| ||| ||                                           g
        cacguauuccuUUAGGAAUACGUGG ACGUAUuuagau uuuaccaaaauc     acau gag gu                                           a
caauauac                         G            a            acuua    -   -  uuuaguaaucuacauaaauuaccaaaggucgugggacguauuu 

>mtr-MIR2652l (-123.80)   [mtr-miR2652l:186-206]

g        a                                                --g    acaacucacgaaaaccauuuuuauagcaaaaugguuuuggcauaauuu 
 cgguuaug ugcauaaggaaaucuuuaugcacucugcauaaaucuagaaaugguuuu   gagu                                                u
 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||||                                                 
 gccaauac acguauuccuUUAGGAAUACGUGGGACGUAUuuaggucuuuaccaaag   cuca                                                a
-        c                                                aca    acaugagguuuugguaaucuauaugaauuaccaaaggucgugggacgu 

>mtr-MIR2653a (-66.10)   [mtr-miR2653a:19-39]

-----------------------------------------------------------------------------------------------------------------------------cgacaacccucuuccaaaUCACGCUGCUGUGAACAUGAUuga     au     -----   -ucc     u 
                                                                                                                                                                       gguau  gagga     agc    cggac u
                                                                                                                                                                       |||||  |||||     |||    ||||| g
                                                                                                                                                                       ccgug  cuccu     uug    gccug a
ucugaccguguuagugugucugcagcgacugucaguuuauuaacaacaaguaguucgagaccuacaguaaaauuuguugcgucguuggguuuccuaaugucuuaguaagaaccguuaaccguacuaguaccaguuugucucuccgaaccguauugaacuacacauca     gu     caaca   uaau     c 

>mtr-MIR2653b (-66.10)   [mtr-miR2653b:19-39]

-----------------------------------------------------------------------------------------------------------------------------cgacaacccucuuccaaaUCACGCUGCUGUGAACAUGAUuga     au     -----   -ucc     u 
                                                                                                                                                                       gguau  gagga     agc    cggac u
                                                                                                                                                                       |||||  |||||     |||    ||||| g
                                                                                                                                                                       ccgug  cuccu     uug    gccug a
ucugaccguguuagugugucugcagcgacugucaguuuauuaacaacaaguaguucgagaccuacaguaaaauuuguugcgucguuggguuuccuaaugucuuaguaagaaccguuaaccguacuaguaccaguuugucucuccgaaccguauugaacuacacauca     gu     caaca   uaau     c 

>mtr-MIR2653c (-66.10)   [mtr-miR2653c:19-39]

-----------------------------------------------------------------------------------------------------------------------------cgacaacccucuuccaaaUCACGCUGCUGUGAACAUGAUuga     au     -----   -ucc     u 
                                                                                                                                                                       gguau  gagga     agc    cggac u
                                                                                                                                                                       |||||  |||||     |||    ||||| g
                                                                                                                                                                       ccgug  cuccu     uug    gccug a
ucugaccguguuagugugucugcagcgacugucaguuuauuaacaacaaguaguucgagaccuacaguaaaauuuguugcgucguuggguuuccuaaugucuuaguaagaaccguuaaccguacuaguaccaguuugucucuccgaaccguauugaacuacacauca     gu     caaca   uaau     c 

>mtr-MIR2654 (-26.80)   [mtr-miR2654:19-38]

uu  u    a   ga       AG GA ---AAAG  UG  uu   -     uug g 
  ga ugag uau  caaAUUC  G  C       UG  CG  ucg auaaa   g g
  || |||| |||  |||||||  |  |       ||  ||  ||| |||||   |  
  cu acuu aua  guuuaag  c  g       ac  gc  agc uguuu   c g
au  c    -   -g       -- ag gacuuaa  gu  uu   c     uua a 

>mtr-MIR2655a (-141.10)   [mtr-miR2655a:21-41]

-   a       u       c                              u                                              a  ga  aaacuaau   a   a   a   -ua  gga 
 ccc uaaguaa aaaaggu CGUUUAGGUCCCUUAACUUUAuuuaaagua cgguuugguccuuucuguuaauuuaauucaaaaaaacguuaaguuu gg  cc        acu auu aau agu   ag   c
 ||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  ||        ||| ||| ||| |||   ||    
 ggg auuuauu uuuuuca gcaaauccagggaauugaaauaaauuucau gccaaaccagggaagacaauuaaauuaaguuuuuuugcaauuuaaa cc  gg        uga uaa uua uca   uc   c
a   a       u       a                              u                                              a  ag  -----aau   a   a   a   uaa  aaa 

>mtr-MIR2655b (-78.70)   [mtr-miR2655b:2-22]

u     A     C        -   u        a    -a         --guuaa                         a  ga  aa   aauac       -  a    aag 
 CGUUU GGUCC UUAACUUU Auu aaaguauc guuu  auccuuucu       uuuaauuaaaaaaaacguuaaguuu gg  cc  auu     uaauuaa au aguu   g
 ||||| ||||| |||||||| ||| |||||||| ||||  |||||||||       ||||||||||||||||||||||||| ||  ||  |||     ||||||| || ||||   g
 gcaaa ccagg aauugaaa uaa uuucauag caaa  uaggaaaga       aaauuaauuuuuuuugcaauuuaaa cc  gg  uag     auuaauu ua ucaa   a
-     a     a        a   c        c    ac         agaacua                         a  ag  aa   aauaa       a  a    acc 

>mtr-MIR2655c (-94.00)   [mtr-miR2655c:21-41]

c  u                     A G             u u     a  a     a         a         -    a   ca        a  gaccaaacuaauauuaauuaaauaaguuaagg 
 cc uaaguaauaaaaggucCGUUU G UCCCUUAACUUUA u aaagu uc guuug uccuuucug uaauuuaau uaaa aaa  uuaaguuu gg                                g
 || ||||||||||||||||||||| | ||||||||||||| | ||||| || ||||| ||||||||| ||||||||| |||| |||  |||||||| ||                                 
 gg auucauuauuuuccaggcaaa c agggaauugaaau a uuuca ag caaac aggaaagau auuaaauua guuu uuu  aauuuaaa cc                                a
a  u                     a g             c c     c  c     c         a         a    a   uc        a  agagaauagaauaaauuaaccauaaucaaaag 

>mtr-MIR2655d (-138.97)   [mtr-miR2655d:21-41]

-                                                    a                          c       c        gagggaccaaauuaauacuaauuaaauaagcuaagg 
 cccauaaguaauaaaaagucCGUUUAGGUCCCUUAACUUUAuuuaaaguauc guuugguccuuucuguuaauuuaauu aaaaaaa guuaaguu                                    g
 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||                                     
 ggguauucauuauuuuucaggcaaauccagggaauugaaauaaauuucauag caaaccaggaaagacaauuaaauuaa uuuuuuu caauuuaa                                    a
a                                                    c                          a       a        aaccagagaauugaauaaauuaaucauaaucaaacc 

>mtr-MIR2655e (-82.17)   [mtr-miR2655e:21-41]

-                    C    A       U         u    uaucgguuugauccuuucuguuaauuuaauucaaaaaaaauguuaaguuuagggacca 
 uccauaaguaauaaaagguc GUUU GGUCCCU AACUUUAuu aaag                                                          a
 |||||||||||||||||||| |||| ||||||| ||||||||| ||||                                                           
 ggguauucauuauuuuccag caaa ccgggga uugaaauaa uuuu                                                          a
a                    a    a       u         u    uuaaauuaaguuuuuuguacaauuuaaaacuagggaauagaauaaauuaaucauaauc 

>mtr-MIR2655f (-133.64)   [mtr-miR2655f:21-41]

-                                               a   c   c                   c           c         agagaccaaacuaauacuaauuaaauaaguuaag 
 cccauaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaa uau ggu ugguccuuuuuguuaauuu auucaaaaaaa guuaaguuu                                  g
 ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||| |||||||||                                  g
 ggguauucauuauuuuccaggcaaauccagggaauugaaguaaauuu aua cca accaggaaagacaauuaaa uaaguuuuuuu caauuuaaa                                  a
a                                               c   a   a                   u           a         accagggaauugaauaaauuaaucauaucaaacc 

>mtr-MIR2655g (-110.56)   [mtr-miR2655g:21-41]

-   a            a        A                        u      a       a             c     a           agggaccaaacuaauacuaauuaaauaaguuaagg 
 cuc uaaguaauaaaa gucCGUUU GGUCCCUUAACUUUAuuuaaagua cgguuu guccuuu uguuaauuuaauu aaaaa acguuaaguuu                                   g
 ||| |||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||| |||||||||||                                    
 ggg auucauuauuuu caggcaaa cuagggaauugaaauaaauuucau gucaaa cagggaa acaauuaaauuaa uuuuu ugcaauuuaaa                                   a
a   a            c        a                        u      c       g             -     a           accagagaauugaauaaauuaaucauaaucaaacc 

>mtr-MIR2655h (-98.03)   [mtr-miR2655h:21-41]

c                        A                 u       ca     a  a   a             a       c         a   a  aaacuaauacua 
 ucauaaguaauaaaaggucCGUUU GGUCCCUUAACUUUAuu aaaguau  guuug uc uuu uguuaauuuaauu aaaaaaa guuaaguuu uga cc            a
 |||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||| || ||| ||||||||||||| ||||||| ||||||||| ||| ||            u
 gguauuuauuauuuuccaggcaaa ucagggaauugaaauaa uuucaua  caaac ag aaa acaauuaaauuaa uuuuuuu caauuuaaa acu gg            u
a                        a                 c       ac     c  g   g             a       a         -   a  gaauagaauaaa 

>mtr-MIR2655i (-112.30)   [mtr-miR2655i:21-41]

-        u            G        CC            a      ua        a                u      -----------            a  gaccaaacuaauacuaauuaaauaagcuaagg 
 cccauaag aauaaaaggucC UUUAGGUC  UUAACUUUAuuu aaguau  guuugguc uuucuguuaauuuaau caaaaa           aacguuaaguuu gg                                g
 |||||||| |||||||||||| ||||||||  |||||||||||| ||||||  |||||||| |||||||||||||||| ||||||           |||||||||||| ||                                 
 ggguauuc uuauuuuccagg aaauccag  aauugaaauaaa uucaua  caaaccag gaagacaauuaaauua guuuuu           uugcaauuuaaa cc                                a
a        u            g        -a            g      gc        g                c      aauuguuuuuu            a  agcgaauugaauaaauuaaucauaauuaaacc 

>mtr-MIR2655j (-117.17)   [mtr-miR2655j:21-41]

-   c                   UUA     C           u              a        a           -                 uagcgaccaaauuaauacuaauugaauaaguuaagg 
 ccu uaaguaauaaaaggucCGU   GGUCC UUAACUUUAuu aaaguaucgguuug uccuuucu uuaauuuaauu caaaaaaauguuaaguu                                    g
 ||| |||||||||||||||||||   ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||                                     
 ggg auucauuauuuuccaggca   ccagg aauugaaauaa uuucauagucaaac aggaaaga aauuaaauuaa guuuuuuuacaauuuaa                                    a
a   u                   uaa     a           c              c        c           u                 aaccagggaauagaauaaauuaaucauaaucaaacc 

>mtr-MIR2655k (-109.00)   [mtr-miR2655k:21-41]

-                               C    C       u            a   a   a                    g  u       a  ga gaaa  aau   a   a   a   uaag   c 
 cucauaaguaauaaaagguuCGUUUAGGUCC UUAA UUUAuuu aaguaucgguuu auc uuu uguuaauuuaauucaaaaaa cg uaaguuu gg  c    cu   acu auu aau agu    gga c
 ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||| ||| |||||||||||||||||||| || ||||||| ||  |    ||   ||| ||| ||| |||    |||  
 ggguauucauuauuuuucaagcaaauccagg aauu aaauaaa uucauagccaaa uag aaa auaauuaaauuaaguuuuuu gc guucaaa cc  g    ga   uga uaa uua uca    ucu a
a                               a    a       u            c   a   g                    -  c       a  ag ----  -au   a   a   a   -caa   a 

>mtr-MIR2655l (-126.90)   [mtr-miR2655l:21-41]

-   a            aaac     A     C                  u                                              ag  a  aaa  aau   a   a   a   -ua   aa 
 ccc uaaguaauaaaa    CGUUU GGUCC UUAACUUUAuuuaaagua cgguuugguccuuucuguuaauuuaauucaaaaaaacguuaaguuu  gg cc   cu   acu auu aau agu   agu  c
 ||| ||||||||||||    ||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  || ||   ||   ||| ||| ||| |||   |||   
 ggg auucauuauuuu    gcaaa ccagg aauugaaauaaauuucau gccaaaccagggaagauaauuaaauuaaguuuuuuugcaauuuaaa  cc gg   ga   uga uaa uua uca   uca  c
a   a            ccaa     a     -                  u                                              -a  -  --g  -au   a   a   a   uaa   aa 

>mtr-MIR2655m (-85.70)   [mtr-miR2655m:21-41]

-       uc        aucC    A                u        cgguuug   cc  u                               a aa  aagcuaau   a   a   a   uaa  ga 
 uucauaa  aauaaaag    GUUU GGUCCCUUAACUUUAu uaaaguau       guc  uu uguugauuuaauucaaaaaaacguuaaguuu g  cc        acu auu aau agu   gg  a
 |||||||  ||||||||    |||| |||||||||||||||| ||||||||       |||  || ||||||||||||||||||||||||||||||| |  ||        ||| ||| ||| |||   ||   
 ggguauu  uuauuuuc    caaa cuagggaauugaaaua auuucaua       cag  aa acaauuaaauuaaguuuuuuugcaauuuaaa c  gg        uga uaa uua uca   uc  c
a       ua        caua    c                u        -----aa   ua  u                               a ca  ----gaau   c   a   a   uaa  aa 

>mtr-MIR2655n (-118.37)   [mtr-miR2655n:21-41]

-cc             cu  c                       u              a                            c     c   a  ga  aaacuaauacua 
   cauaaguaaugaa  gu CGUUUAGGUCCCUUAACUUUAuu aaaguaucgguuug uccuuucuguuaauuuaauucaaaaaaa guuaa uuu gg  cc            a
   |||||||||||||  || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||  ||             
   guauucauuauuu  ca gcaaauccagggaauugaaauaa uuucauagucaaac aggaaagacaauuaaauuaaguuuuuuu caauu aaa cc  gg            u
aga             uc  c                       c              c                            a     u   a  ag  aauagaauaaau 

>mtr-MIR2655o (-126.80)   [mtr-miR2655o:21-41]

-            a  ag  g                       g        a                                        a   u  uc  uu  -cu    u 
 cucauaaguaau aa  gu CGUUUAGGUCCCUUAACUUUAuu aaaguauc guuugguccuuucuguuaauuuaauucaaaaaaauguuaa uuu gg  cc  au   uauu a
 |||||||||||| ||  || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||  ||  ||   |||| a
 ggguauucauua uu  ca gcaaauccagggaauugaaauaa uuucauag caaacuaggaaagacaauuaaauuaaguuuuuuugcaauu aaa cc  gg  ug   auga u
a            c  ga  g                       a        c                                        g   u  cu  uu  auu    u 

>mtr-MIR2656a (-21.90)   [mtr-miR2656a:20-39]

---acau    a aaga    uA    -GC    U   -GU   ag     -        g c   g 
       gcau u    gguc  AGUU   AUAA CGA   UGG  ucaca uuugucga u aag a
       |||| |    ||||  ||||   |||| |||   |||  ||||| |||||||| | |||  
       cgug a    uuag  ucaa   uauu guu   guu  agugu gaauaguu a uuu u
aguaaau    a ---g    ua    aca    u   aau   ga     u        g a   g 

>mtr-MIR2656b (-22.50)   [mtr-miR2656b:20-39]

---acau    a aaga    uA    -GC    U   -GU   ag     -      g     aaga 
       gcau u    gguc  AGUU   AUAA CGA   UGG  ucgca uuuguc aguca    u
       |||| |    ||||  ||||   |||| |||   |||  ||||| |||||| |||||     
       cgug a    uuag  ucaa   uauu guu   guu  agugu gaauag uuagu    g
aguaaau    a ---g    ua    aca    u   aau   ga     u      -     auuu 

>mtr-MIR2657a (-55.05)   [mtr-miR2657a:222-243]

c   auuccuug   uu   g    a        ----     aaauuucaaguuauugugcaagcaagaagugugacuccaaggggaagauaccaauuuggagaacugcaauggacaaauggaaaacaca 
 cag        aca  caa aaaa uggugaaa    agaag                                                                                        u
 |||        |||  ||| |||| ||||||||    |||||                                                                                         
 guc        ugu  GUU UUUU GCUACUUU    Ucuuc                                                                                        u
u   guuguuca   -u   G    A        AUUG     guaugaucauauuagguuauuaugguguaauuuagguugauaaaccuuauuagaaaguaaacgcaacuugucauugcccugaggaaug 

>mtr-MIR2657b (-55.05)   [mtr-miR2657b:222-243]

c   auuccuug   uu   g    a        ----     aaauuucaaguuauugugcaagcaagaagugugacuccaaggggaagauaccaauuuggagaacugcaauggacaaauggaaaacaca 
 cag        aca  caa aaaa uggugaaa    agaag                                                                                        u
 |||        |||  ||| |||| ||||||||    |||||                                                                                         
 guc        ugu  GUU UUUU GCUACUUU    Ucuuc                                                                                        u
u   guuguuca   -u   G    A        AUUG     guaugaucauauuagguuauuaugguguaauuuagguugauaaaccuuauuagaaaguaaacgcaacuugucauugcccugaggaaug 

>mtr-MIR2658 (-18.50)   [mtr-miR2658:3-22]

a    UG C UU    -A    C   --      ----a   auau ug   uaa    u 
 aAUG  A C  GUAU  UGAU ugg  aaggag     gaa    u  aua   gauu u
 ||||  | |  ||||  |||| |||  ||||||     |||    |  |||   ||||  
 uuac  u g  ugua  acua acc  uuccuc     cuu    g  uau   uuaa a
a    gu u uu    aa    a   aa      accaa   gucu gu   -ua    a 

>mtr-MIR2659a (-53.44)   [mtr-miR2659a:166-186]

a    a    aaaucaa   c    --       c    g     ucuucaucgaauauggauauagauacuccugcuuaugaaaucaaaggaagaacuauguc 
 uucu cuuc       ugg aucu  ucaaguu ugcc guggu                                                           u
 |||| ||||       ||| ||||  ||||||| |||| |||||                                                           a
 aaga gaag       auc uaGA  GGUUCAG GUGG UACCa                                                           u
g    c    ----aac   u    AU       C    G     cucaaucucuucacuuuagguguccuaaaaggcgaacuuacuaaucgaggguaaggagu 

>mtr-MIR2659b (-51.04)   [mtr-miR2659b:166-186]

a    a    aaaucaa   c    --       c    g     ucuucaucgaauauggauauagauacuccugcuuaugaaaucaaaggaagaacuauguc 
 uucu cuuc       ugg aucu  ucaaguu ugcc guggu                                                           g
 |||| ||||       ||| ||||  ||||||| |||| |||||                                                           a
 aaga gaag       auc uaGA  GGUUCAG GUGG UACCa                                                           u
g    c    ----aac   u    AU       C    G     cucuaucucuucacuuuaggugaccuaaaaggcgaacuuacuaaucaaggguaaggagu 

>mtr-MIR2659c (-51.04)   [mtr-miR2659c:166-186]

a    a    aaaucaa   c    --       c    g     ucuucaucgaauauggauauagauacuccugcuuaugaaaucaaaggaagaacuauguc 
 uucu cuuc       ugg aucu  ucaaguu ugcc guggu                                                           g
 |||| ||||       ||| ||||  ||||||| |||| |||||                                                           a
 aaga gaag       auc uaGA  GGUUCAG GUGG UACCa                                                           u
g    c    ----aac   u    AU       C    G     cucuaucucuucacuuuaggugaccuaaaaggcgaacuuacuaaucaaggguaaggagu 

>mtr-MIR2659d (-51.50)   [mtr-miR2659d:166-186]

a    a    aaaucaa   c    --       c    g     ucuucaucgaauauggauauagauacuucugcuuaugaaaucaaaggaagaacuauguc 
 uucu cuuc       ugg aucu  ucaaguu ugcc guggu                                                           g
 |||| ||||       ||| ||||  ||||||| |||| |||||                                                           a
 aaga gaag       auc uaGA  GGUUCAG GUGG UACCa                                                           u
g    c    ----aac   u    AU       C    G     cucaaucucuucacuuuagguguccuaaaaggcgaacuuacuaaucgaggguaaggagu 

>mtr-MIR2659e (-49.09)   [mtr-miR2659e:165-185]

a   a    aaaucaa   c    --       c    g     ucuucaucaaauauggauauagauacuccagcauaugaaaucaaaggaagaacuauguc 
 ucu cuuc       ugg aucu  ucaaguu ugcu guggu                                                           u
 ||| ||||       ||| ||||  ||||||| |||| |||||                                                           a
 aga gaag       auc uaGA  GGUUCAG GUGG UACCa                                                           u
a   c    ----aac   u    AU       C    G     cucaaucucuucacuuuaggugaccuaaaaggcgaacuuacuaauugaggauaaggagu 

>mtr-MIR2659f (-53.44)   [mtr-miR2659f:166-186]

a    a    aaaucaa   c    --       c    g     ucuucaucgaauauggauauagauacuccugcuuaugaaaucaaaggaagaacuauguc 
 uucu cuuc       ugg aucu  ucaaguu ugcc guggu                                                           u
 |||| ||||       ||| ||||  ||||||| |||| |||||                                                           a
 aaga gaag       auc uaGA  GGUUCAG GUGG UACCa                                                           u
g    c    ----aac   u    AU       C    G     cucaaucucuucacuuuagguguccuaaaaggcgaacuuacuaaucgaggguaaggagu 

>mtr-MIR2660a (-23.60)   [mtr-miR2660a:3-23]

a      C  C               uuuc 
 gUAAGA AU AGCUAUAAGCUAguu    a
 |||||| || |||||||||||||||    g
 cauuuu ua ucgauauucgaucga    c
c      -  u               cuuu 

>mtr-MIR2660b (-23.60)   [mtr-miR2660b:3-23]

a      C  C               uuuc 
 gUAAGA AU AGCUAUAAGCUAguu    a
 |||||| || |||||||||||||||    g
 cauuuu ua ucgauauucgaucga    c
c      -  u               cuuu 

>mtr-MIR2661 (-49.70)   [mtr-miR2661:21-41]

guag    -u  -au    c                          auucauu   -a     ---ga   u 
    cuuc  ug   uuug aaUAGGUUUGAGAAAAUGGGCAGuuc       aga  ugaga     gac a
    ||||  ||   |||| ||||||||||||||||||||||||||       |||  |||||     ||| u
    gaag  gc   aaac uuaucuagacucuuuuaccuguuaag       ucu  acucu     cug u
ccaa    uu  cac    a                          ---auuu   ga     aaaaa   u 

>mtr-MIR2662 (-82.30)   [mtr-miR2662:322-342]

----------------------------------------------------------uuucauuucacauuuucauuuucaccaaa        acc     aaa      -u     uauguaagaaauguaaaauaccaagauuuuaucauucuauaaaaguucaaguagcacauaaauacauuuuugaaauaaaaa 
                                                                                       caacauag   aaaua   aauuaa  ucuau                                                                                 g
                                                                                       ||||||||   |||||   ||||||  |||||                                                                                 c
                                                                                       guuguauu   uuugu   uuaauu  agaua                                                                                 a
aUAAGCCAAGUGUAAAAAUGAGuuggcguaccaaaccaaaccaaacgccgaaaguaaaaugguuggcuugguaugguuugguuuggc        auu     -ga      uu     caguggaucugguuaugauuaucuuugaguuaccuuugaaaauauuuuacuguauaaacaagagaacaauucaaagaagaa 

>mtr-MIR2663 (-21.30)   [mtr-miR2663:21-40]

-      aa  aau    u     GAGAGGGCGUUACAAUUuuuauggugaugcucg 
 cauuaa  au   caaa aaUUA                                 u
 ||||||  ||   |||| |||||                                 g
 guaauu  ug   guuu uuagu                                 g
g      gg  -gu    -     gguaauugguaguguuuucaggugguggugggu 

>mtr-MIR2664 (-88.60)   [mtr-miR2664:21-41]

---------uuauaaaaaaaaaaa        U              G               a  a               c    a     a    aucaauuaacgauuuu 
                        aguuuAAU GUGGUGGGUUGACA UCcaaaacaguuuug ac uacaaucaaucaaaa auuu gaauc ccac                a
                        |||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||| |||| ||||| ||||                 
                        ucaaauua caccacucaacugu agguuuugucaaaac ug auguugguuaguuuu uaag cuuag ggug                a
uaguauuaaccauaaaauaaaaac        c              a               g  c               a    a     c    caaaccagguauacuu 

>mtr-MIR2665 (-16.95)   [mtr-miR2665:13-33]

u    --agaggagUG  UU AGG    -          aauaccaccccucaauga 
 auga           AU  C   UCAA GAAUUGAucc                  a
 ||||           ||  |   |||| ||||||||||                  g
 uacu           ua  g   gguu uuuggcuggg                  a
-    guuaggauaua  gg aaa    g          aucaaaagagaagguaaa 

>mtr-MIR2666 (-76.73)   [mtr-miR2666:387-407]

uugac     guuu   uuaagu     u        uuu     c    -------      cc     ----uc      aauauucuugugcgugugaaagaaucauucccuguuugcuuaauaugugacauauaguugauaucuuaagcuuuuauuuuaaaucuccgauuucuugccauguuguuaauguacuauaugauaauugcaccuauaauu 
     cuuuu    aua      uccuu guauuuuc   cuuuu uucu       aaagug  ccagu      ugcaua                                                                                                                                          u
     |||||    |||      ||||| ||||||||   ||||| ||||       ||||||  |||||      ||||||                                                                                                                                          g
     gaaaa    ugu      AGGAA UAUAGGAG   GAAAG aagg       uuuuau  gguua      acguau                                                                                                                                          u
-cauu     -agu   ---uau     C        --U     C    auacuuu      uu     cuuuuu      aaaugcaaacgcauacacgguuuucauuuaccauuuaaacucauucucuucauauuaacauauacacauacaccuucaacuuaacaaagguuuuugaacguuucuuaguccuuuacaacaggucaucgaauaagucuu 

>mtr-MIR2667 (-30.00)   [mtr-miR2667:29-48]

g   -        a       -u   u 
 cgu ugguagcc ucagauc  gga c
 ||| |||||||| |||||||  |||  
 gua gCCAUCGG AGUCUAG  CCU g
a   u        C       UU   u 

>mtr-MIR2668 (-46.21)   [mtr-miR2668:18-39]

a    --                 C               Cguuuaa      guccuuauau 
 augg  uuaaauauguauUUCAU CUUGCAAUUAGGGGU       aaauug          u
 ||||  ||||||||||||||||| |||||||||||||||       ||||||          u
 uauc  aauuuauacauaaagua gaacguuaaucccca       uuuaac          g
a    ug                 a               -------      aguccuaauu 

>mtr-MIR2669 (-28.20)   [mtr-miR2669:84-105]

a      a        aaugacuuuucuggugaagucaacacuauaguauuaaa 
 ugguga auuaugag                                      a
 |||||| ||||||||                                       
 acuaCU UGAUACUU                                      g
a      A        CUGACUUGAAAuauuugucaccccacgaugagugaugu 

>mtr-MIR399q (-61.23)   [mtr-miR399q:138-158]

g     a  u             ua               auaaugggugguugcuaguuuauuuuacaucuauauuaaaauuuua 
 uaagc aa cauucaaagggca  ucuccuuuggcaggu                                              u
 ||||| || |||||||||||||  |||||||||||||||                                               
 auucg uu gugaguUUCUCGU  AGAGGAAACCGUuca                                              g
g     a  u             CG               acaaaugguacuaucaaaaaaaauaaaaaauaaacuauuuauuugu 

>mtr-MIR2670a (-93.84)   [mtr-miR2670a:189-209]

-agugaucaaacuuuuuugggguaaaauagugaguagccgauuuggugaagug       auucuga              -        ---      -u    ---           
                                                     aucaacc       uaaguuuaaaucug uuuuuuuu   uacucc  gaaa   cuuuuuacca 
                                                     |||||||       |||||||||||||| ||||||||   ||||||  ||||   ||||||||| u
                                                     uaguugg       auuuaaauuuagac aaaaaaaa   augggg  cuuu   ggaaaauggg 
cacuuuaguagaaccccauUUUAUCACUCGUUGGAAGAACuccuuuuauggag       gaacccg              c        aau      uu    uua           

>mtr-MIR2670b (-89.90)   [mtr-miR2670b:185-205]

u      a    uuc   a                 ga   a     -----  g       a     a         a    -cua     -       -   ---a           
 gaucaa cuuc   ggg uaaaauagugaguagcu  cuu gggaa     gu aucgacc uuggg uaaguuuaa ucug    uuuuu uacucca uaa    cuuuuuaccg 
 |||||| ||||   ||| |||||||||||||||||  ||| |||||     || ||||||| ||||| ||||||||| ||||    ||||| ||||||| |||    ||||||||| u
 uuaguu gaag   ccc auUUUAUCACUCGUUGG  GAA cucuu     ua ugguugg aaccc auuuaaauu agac    aaaaa auggggu guu    gaaaaauggg 
-      a    -ua   c                 AA   C     uuaug  g       g     g         c    caaa     u       u   cuua           

>mtr-MIR2670c (-94.50)   [mtr-miR2670c:183-203]

u     uac     c    -c               ga         -----  g        cua  a           -uu          ---     --    -       - c 
 gauca   uucuu gggg  aaauagugaguagcc  uuuggggaa     gu aucaaccc   gg uaaguuuaaau   guuuuuuuua   cccca  gaga cuuuuua c g
 |||||   ||||| ||||  |||||||||||||||  |||||||||     || ||||||||   || |||||||||||   ||||||||||   |||||  |||| ||||||| |  
 cuggu   aagaa cccc  UUUAUCACUCGUUGG  GAACuccuu     ua uaguuggg   cc auuuaaauuua   caagaaaaau   ggggu  uucu gaaaaau g u
-     cga     -    au               AA         uuaug  g        aac  g           uac          aug     uc    a       c g 

>mtr-MIR2670d (-87.70)   [mtr-miR2670d:185-205]

u  uc      cuuc                     ga   a      -----ua       c     a           --aucc      aa    -c    ---ac          
 ga  aaucuu    gggguaaaauagugaguagcc  cuu gggaag       aucaacc uuggg uaaguuuaaau      uuuuuu  accc  agaa     uuuuuaccg 
 ||  ||||||    |||||||||||||||||||||  ||| ||||||       ||||||| ||||| |||||||||||      ||||||  ||||  ||||     |||||||| u
 cu  uuagaa    ccccauUUUAUCACUCGUUGG  GAA cccuuu       uaguugg aacuc auuuaaauuua      aaaaaa  uggg  ucuu     aaaaauggu 
-  uu      -aca                     AA   C      uauguag       u     g           gaccaa      aa    cu    cuaau          

>mtr-MIR2671j (-19.81)   [mtr-miR2671j:63-83]

u       -uuacuuuuu   uc  uu   uu          uuc   uu g 
 ggcuuaa          ugg  cc  aac  aauuuuuggu   guu  g u
 |||||||          |||  ||  |||  ||||||||||   |||  |  
 uuggguu          acC  GG  UUG  UUGAAAAUUa   caa  c u
-       uuuauucaau   CU  CU   CU          --u   uu c 

>mtr-MIR2671a (-214.90)   [mtr-miR2671a:21-41]

-       -   u                   C    C      a                   a                                                          ca                         -guu        a   c   acucuaauac 
 uucguuu ggu ccuuaacuaUUAAAAGUUU GUUU GGUCCc uaauuuauuuuuugguuuc uuuuggucccuuaacuauuaaaaguuucguuuugguccuuuaacuuacuuuuugguuu  uuuuggucccuuaacuuauuuuuug    ucauuuug ucc uua          a
 ||||||| ||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    |||||||| ||| |||          u
 aagcaaa cca ggaauugauaauuuucaaa caaa ccaggg auugaaugaaaaaccaaag aaaaccagggaauugauaauuuucaaagcaaaaccaggaaauugaaugaaaaaccaaa  aaaaccagggaauugaguaggagac    ggugaaac agg aau          u
a       a   u                   a    a      a                   c                                                          ac                         aguu        c   a   acaauccuac 

>mtr-MIR2671b (-224.80)   [mtr-miR2671b:21-41]

-                                   C      a            g      c                                      c                                              -auu  a         c   acucuaauac 
 ucguuuuggucccuuaacuaUUAAAAGUUUCGUUU GGUCCc uaauuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuucguuuuggucc uuaacuuauuuuuugguuucguuuuggucccuuaacuuauuuuuug    uc uuuuggucc uua          a
 ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    || ||||||||| |||          u
 agcaaaaccagggaauugauaauuuucaaagcaaa ccaggg auugaaugaaaa ccaaaa aaaaccggggaauugauaauuuucgaagcaaaaccagg aauugaaugaaaagccaaagcaaaaccagggaauugaguaggaggc    gg gaaaucagg aau          u
a                                   a      a            a      c                                      c                                              aguu  g         a   acaauccuac 

>mtr-MIR2671c (-218.90)   [mtr-miR2671c:21-41]

-        a                          C      a            g      c                                                                             a       -guu       a    c   acucuaauac 
 ucguuuug uuccuuaacuaUUAAAAGUUUCGUUU GGUCCc uaacuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuuuguuuuggucuuuuaacuuacuuuuugguuucguuuuggucccuuaacuu uuuuuug    ucauuuu gucc uua          a
 |||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    ||||||| |||| |||          u
 agcaaaac agggaauugauaauuuucaaagcaaa ccaggg auugaaugaaaa ccaaag aaaaccagggaauugauaauuuucaaagcaaaaccagaaaauugaaugaaaaaccaaagcaaaaccagggaauugag aggaagc    ggugaaa cagg aau          u
a        c                          a      a            a      c                                                                             a       aguu       c    a   acaauccuac 

>mtr-MIR2671d (-212.20)   [mtr-miR2671d:21-41]

-                              C    C      a            g      c                            g         c                                      au          --  a         c   acucuaauac 
 ucguuuugguuccuuaacuaUUAAAAGUUU GUUU GGUCCc uaacuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuuc uuuuggucc uuaacuuauuuuuugguuucguuuuggucccuuaacuu  uuuuuuuguu  uc uuuuggucc uua          a
 |||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||  || ||||||||| |||          u
 agcaaaaccagggaauugauaauuuucaaa caaa ccaggg auugaaugaaaa ccaaag aaaaccagggaauugauaauuuucaaag aaaaccagg aauugaaugaaaaaccaaaguaaaaccagggaauugag  aaggaagcag  gg gaaaccagg aau          u
a                              a    a      a            a      u                            a         a                                      --          uc  a         a   acaauccuac 

>mtr-MIR2671e (-244.32)   [mtr-miR2671e:16-36]

u                             C      a                   c                            auuuuggucccuugacuuauuuuuugguuucguuuuggucucuuaacuuauuuuuuuguuucauuuuggucccuuaacucuaauacauucauccuaacauaaaggaucaaagagguugacggaggaugagu 
 uggucccuuaacuaUUAAAAGUUUCGUUU GGUCCc uaacuuauuuuuggguuuu uuuuggucccuuaacuauuaaaaguuuc                                                                                                                                   u
 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||                                                                                                                                   a
 accagggaauugauaauuuucaaagcaaa ccaggg auugaaugaaaauccaaag aaaaccagggaauugauaauuuucaaag                                                                                                                                   a
-                             a      a                   c                            caaaaccagggaauugauaauuuucaaagcaaaaccagggaauugaaugaaaaaccaaagcaaaaccagggaauugauaauuuucgaagcaaaaccaggcaauugaaugaaaaaccaaagcaaaaccaggg 

>mtr-MIR2671f (-218.10)   [mtr-miR2671f:21-41]

-             u                     C      a            g      c                                      c              a                       a          --            c   acucuauugc 
 ucguuuugguucc uaacuaUUAAAAGUUUCGUUU GGUCCc uaacuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuucguuuuggucc uuaacuuauuuuuu guuucguuuugguccuuuaacuu uuuuuugguu  ucauuuuggucc uua          a
 ||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||  |||||||||||| |||          u
 aguaaaaccaggg auugauaauuuucaaagcaaa ccaggg auugaaugaaaa ccaaag aaaaccagggaauugauaauuuucaaagcaaaaccagg aauugaaugaaaaa caaagcaaaaccagggaauugag aaggagccag  ggugaaaccagg aau          u
a             u                     a      a            a      c                                      a              c                       -          uu            a   acaauccuac 

>mtr-MIR2671g (-200.90)   [mtr-miR2671g:21-41]

-                                   C      a            ga     c                                 a    c              u                c       a      g   -u -          c   acucuaauac 
 ucguuuugguuccuuaacuaUUAAAAGUUUCGUUU GGUCCc uaauuuauuuuu  guuuu uuuuggucccuuaacuauuaaaaguuucguuuu gucc uuaacuuauuuuuu gguuucguuuuggucc uuaacuu uuuuuu guu  c auuuuggucc uua          a
 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||| |||||| |||  | |||||||||| |||          u
 agcaaaaccagggaauugauaauuuucaaagcaaa ccaggg auugaaugaaaa  caaag aaaaccagggaauugauaauuuucaaagcaaaa cagg aauugaaugaaaaa cuaaagcaaaaccagg aauugag aaggag cag  g ugaaaccagg aau          u
c                                   a      a            ac     c                                 c    a              -                u       -      g   uu a          a   acaauccuac 

>mtr-MIR2671h (-186.00)   [mtr-miR2671h:21-41]

ucguuuugguuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaacuuauuuuuugguuucauuuuggucccuuaacuauuaaaaguuuc                              c                          -guu            c   acucuaauac 
                                                                                           guuuugguccuuuaacuuacuuuuugguuu guuuuggucccuuaacuuauuuuuug    ucauuuuggucc uua          a
                                                                                           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    |||||||||||| |||          u
                                                                                           caaaacuaggaaauugaaugaaaaaccaaa caaaaccagggaauugaguaggagac    ggugaaaccagg aau          u
----------------------------aagcaaaaccauggaauugauaauuuucaaagcaaaaccagggaauugaaugaaaaaccaaag                              a                          aguu            a   acaauccuac 

>mtr-MIR2671i (-202.20)   [mtr-miR2671i:21-41]

-                                   C    C a            g      c              g                     a    -                            c       a       -guu            c   acucuaauac 
 ucguuuugguuccuuaacuaUUAAAAGUUUCGUUU GGUC c uaacuuauuuuu gguuuu uuuuggucccuuaa uauuagaaguuucguuuuggu ccuu aacuuauuuuuugguuucguuuuggucc uuaacuu uuuuuug    ucguuuuggucc uua          a
 ||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||||    |||||||||||| |||          u
 agcaaaaccagggaauugauaauuuucaaagcaaa ccag g auugaaugaaaa ccaaag aaaaccagggaauu auaauuuucaaagcaaaacca ggaa uugaaugaaaaaccaaagcaaaaccagg aauugag aggaagc    ggugaaaucagg aau          u
a                                   a    a a            a      c              g                     -    a                            -       a       aguu            a   acaauccuac 

>mtr-MIR2672 (-66.23)   [mtr-miR2672:21-42]

----gua      -----uuaauu                                  --gc      a 
       aagaua           aguggUUAAUCGACCAAGUGGGUACUAcauacuu    guaucu a
       ||||||           ||||||||||||||||||||||||||||||||||    |||||| u
       uucuau           ucaccaauuagcugguucaccuaugauguaugag    uauaga u
gcaauug      uauauauauuu                                  aagu      a 

>mtr-MIR2673a (-72.80)   [mtr-miR2673a:6-27]

gucu     ----UU   -  UC          ------------      -u    aauuuca     a  guuaguuuccauagcgacuucauuuugcauuugugaagcugaauugguccagauuucauuaac 
    uCCUC      CCU CU  CUCUUCCACa            uccucg  caag       gcauc uc                                                               g
    |||||      ||| ||  ||||||||||            ||||||  ||||       ||||| ||                                                                
    aggag      gga gg  ggggaggugu            aggggu  guuc       cgugg ag                                                               a
---g     caaguu   u  uu          gaaacaguugau      uu    ---gaua     -  uuaccgguuuaaguguuuguuuaggguaucuuuuagaccgucgucccaaauuacugcuacuga 

>mtr-MIR2673b (-79.54)   [mtr-miR2673b:21-42]

-  gu  uuggugu        -C  UU   -  UC           ccuc     gaauuucagcaucaucguuaguuuccauagcgacuucauuuugcacuugugaagcugaguugguccagauuucauuaacgaagu 
 gg  cg       ugcucuuC  UC  CCU CU  CUCUUCCACau    gucaa                                                                                    c
 ||  ||       ||||||||  ||  ||| ||  |||||||||||    |||||                                                                                     
 uc  gu       augaggag  ag  gga gg  ggggaggugug    caguu                                                                                    a
g  ug  uaguguu        ca  uu   u  uu           -aaa     gauagggguuuguucgauacgugaaguuaccgguuuaaguguuuguuuaugguaucuuuuagaccgucgucccaaauuacugcu 

>mtr-MIR2674 (-62.10)   [mtr-miR2674:256-276]

---------------------------------------------------------------------------------------------------------------------------------------aauuagaagcucuggcuggaaaacacgaauggu      g  -  ag   a  cau   ca   -    g    aaag  u 
                                                                                                                                                                        uuaauc cu ca  ucg au   cau  caa cucg gaca    gu g
                                                                                                                                                                        |||||| || ||  ||| ||   |||  ||| |||| ||||    || c
                                                                                                                                                                        aguugg ga gu  agu ua   gua  guu gggu cugu    ca u
auaaucuuuucacucuugGGUACUGAAGGUUUCGCUCACcuacuggucuccguauacaauguugugcaagauuuuguacguaaaaaagacaacuuuguaaaaacaucgaaccugauuuaaguagaaauuuucgaaaggaagauugguugagucgucguagauacagua      g  a  gg   a  aau   -a   a    a    ---a  a 

>mtr-MIR2675a (-52.40)   [mtr-miR2675a:137-157]

acuuucau                   a    -  a        uuuaaaaaggucccugcaaaaauuuuuguuuuugaaaauaaaau 
        gaauaugguuuuggucccu caaa au uuuuguuu                                            u
        ||||||||||||||||||| |||| || ||||||||                                             
        uuuauaccaaaaUUAGGGA GUUU UA GGAGCaaa                                            u
----cgau                   C    A  C        accaaaaucaggaacauuuuuuuuuaaacaaaaaccaggaacgu 

>mtr-MIR2675b (-52.40)   [mtr-miR2675b:137-157]

acuuucau                   a    -  a        uuuaaaaaggucccugcaaaaauuuuuguuuuugaaaauaaaau 
        gaauaugguuuuggucccu caaa au uuuuguuu                                            u
        ||||||||||||||||||| |||| || ||||||||                                             
        uuuauaccaaaaUUAGGGA GUUU UA GGAGCaaa                                            u
----cgau                   C    A  C        accaaaaucaggaacauuuuuuuuuaaacaaaaaccaggaacgu 

>mtr-MIR2676a (-59.13)   [mtr-miR2676a:175-195]

-         gag       -    ug   g  u   aa  ug  ga   u  a   ug      a     ---         -u    aag       -uagagaau       g    cu 
 aaauacuuu   augaauu ccau  uuu ga aau  uu  aa  auu uc aaa  auggaa uuuau   gaaguauuu  guuc   uuaaaau         uucaaau acac  a
 |||||||||   ||||||| ||||  ||| || |||  ||  ||  ||| || |||  |||||| |||||   |||||||||  ||||   |||||||         ||||||| ||||   
 uuuaugaag   uauuuaa ggua  aaa cu uua  aa  UU  UAA AG UUU  UACcuu aagua   uuucauaaa  uaag   aguuuug         agguuug ugug  a
u         ---       a    gu   a  u   ag  GU  AA   U  G   GU      -     gaa         cu    -gg       uaaguaagu       -    aa 

>mtr-MIR2676b (-45.13)   [mtr-miR2676b:156-176]

c   ug   g  u   aa  ug  ga   u  a   ug      a     ---         -u    aag       -uagagaau       g    cu 
 cau  uuu ga aau  uu  aa  auu uc aaa  auggaa uuuau   gaaguauuu  guuc   uuaaaau         uucaaau acac  a
 |||  ||| || |||  ||  ||  ||| || |||  |||||| |||||   |||||||||  ||||   |||||||         ||||||| ||||   
 gua  aaa cu uua  aa  UU  UAA AG UUU  UACcuu aagua   uuucauaaa  uaag   aguuuug         agguuug ugug  a
-   gu   a  u   ag  GU  AA   U  G   GU      -     gaa         cu    -gg       uaaguaagu       -    aa 

>mtr-MIR2676c (-53.90)   [mtr-miR2676c:197-217]

a   -ua      uuaucauu            --   ug   uu     ccaggccuuugcaauuugcuucauaaacuuugaaguauuguuucauaaaucacauuggaaggcuuauuacuu 
 auc   uuggaa        uguuuuaaauua  auu  gau  uggaa                                                                        a
 |||   ||||||        ||||||||||||  |||  |||  |||||                                                                         
 uag   aacuuu        acgaaGUUUAAU  UAG  UUG  ACcuu                                                                        a
g   uaa      -------u            AA   GU   UU     aagugggguuucauaaacuuaagggaauuuuguuauguaagggaguuuuguaaggggguagguuugugugag 

>mtr-MIR2676d (-66.10)   [mtr-miR2676d:319-339]

------------------------------------------------------------------------------------------------------augauuuguguucaauauagauauaaggacaauggggugauuauacacaugaucauuauuacauaaagauuucgucauaucacauaaca      -  -a     ---gu          u  uau 
                                                                                                                                                                                               uuuuug uc  cuuau     ggcaacaaua au   u
                                                                                                                                                                                               |||||| ||  |||||     |||||||||| ||    
                                                                                                                                                                                               aagaac ag  ggaua     uuguuguuau ug   a
aacuuuuaggaaGUUUAAUAAUAGGUUUGUUACuuuaaguggaguuucauaaacuuaaaggaauuuuguaauguaagggaguuuuguaaggagguagguuugugugagaaucaaaaaaaaccaauuuaaguuaaaacuaggagcauaaaaguuaaaacaauugaaaauuauguugauaaaaauuuuaauug      u  gg     aauuu          u  uag 

>mtr-MIR2676e (-66.10)   [mtr-miR2676e:319-339]

------------------------------------------------------------------------------------------------------augauuuguguucaauauagauauaaggacaauggggugauuauacacaugaucauuauuacauaaagauuucgucauaucacauaaca      -  -a     ---gu          u  uau 
                                                                                                                                                                                               uuuuug uc  cuuau     ggcaacaaua au   u
                                                                                                                                                                                               |||||| ||  |||||     |||||||||| ||    
                                                                                                                                                                                               aagaac ag  ggaua     uuguuguuau ug   a
aacuuuuaggaaGUUUAAUAAUAGGUUUGUUACuuuaaguggaguuucauaaacuuaaaggaauuuuguaauguaagggaguuuuguaaggagguagguuugugugagaaucaaaaaaaaccaauuuaaguuaaaacuaggagcauaaaaguuaaaacaauugaaaauuauguugauaaaaauuuuaauug      u  gg     aauuu          u  uag 

>mtr-MIR2676f (-35.70)   [mtr-miR2676f:166-186]

uuuuuuauuacuucauccaaacaauaacauuuaagaaugaaaacaa   aa ug  uc             auaauucuaaauucuucaaaauuucucaauu 
                                              uug  u  aa  auuugaauucccu                               a
                                              |||  |  ||  |||||||||||||                               c
                                              agu  g  uu  uaaacuuaaggga                               c
------------------gaaGUUUAAUAAUAGGUUUGUUACcuua   gg gu  ua             guuuuguaaaaggaucucacacaaaccuacu 

>mtr-MIR2088b (-58.20)   [mtr-miR2088b:78-98]

guagac  c        c                         aaaac   cca    ug 
      gg ggcuuaac gauguaggccuagauuacauuggac     agu   aacu  a
      || |||||||| |||||||||||||||||||||||||     |||   ||||   
      uc cugaauug cuaCAUCUGGAUCUAAUGUAACCUg     uca   uugg  g
----aa  u        u                         guucu   ---    ua 

>mtr-MIR2677 (-40.20)   [mtr-miR2677:18-39]

c    - -----       -ucu      UG  A   C    AG    c    -----      aaaaaaaaauaaaggaaaacacuaauaaauacaauagcuauagcuuugucgucgccuagaguuuacau 
 acca c     uaaauau    aUUUAU  AU UUG UAAU  AUuc uauu     aagauu                                                                    g
 |||| |     |||||||    ||||||  || ||| ||||  |||| ||||     ||||||                                                                    a
 uggu g     auuuaua    ugaaug  ua aau auua  uaag auaa     uucuaa                                                                    a
a    u cucca       ucgu      gu  g   u    ag    a    aaugu      aaaaaaauaagauauuggaaaguacugucuuuucccuuuauuuuuuuuuuccuuuaaaaaacauccua 

>mtr-MIR2678 (-100.88)   [mtr-miR2678:393-413]

a    --g    ucccaacca           c  uu      gagcuucucuccaucuugacaccaucugagagucuugucggaaucuuuguucauguuuggcaaaagcuucagaauaaaucccacuuugcuuucgaaccucagaaggaucaacaucauagaaaacaagaagaacauguuuuucagauuccucaaugcauucacaaaucuucucua 
 ucac   uaga         aagauacucgc ac  guuuua                                                                                                                                                                              a
 ||||   ||||         ||||||||||| ||  ||||||                                                                                                                                                                              u
 agug   gucu         UUCUGUGAGCG UG  UAAAGU                                                                                                                                                                              u
c    aaa    -----ccac           U  -U      aacuaaaagaaaaacuacggaaacuuuguuuuccauaaaaacauaaagcccuacuauguuuagaaguuuuuccacuuagguaucccggacucgaagaagcucguuagguuccuagaguacaaaaacaacggcagaagaguucuuuaauacgaaggagcuguaccacgaacguuc 

>mtr-MIR2679a (-30.33)   [mtr-miR2679a:21-41]

a   c  -u   a   ucauaCUUUUC         C        guacuaucacuuuggaa 
 ugg gg  ccg aac           ACUUUCGAA GGGUGagu                 g
 ||| ||  ||| |||           ||||||||| ||||||||                  
 acc cc  ggc uug           uggagguuu uccauucg                 a
a   u  uc   a   -----uuaacu         -        gcucauuguauaucugc 

>mtr-MIR2679b (-29.63)   [mtr-miR2679b:21-41]

a   c  -u   a   ccauaCUUUUC         C        guacuaucacuuuggaa 
 ugg gg  ccg aac           ACUUUCGAA GGGUGagu                 g
 ||| ||  ||| |||           ||||||||| ||||||||                  
 acc cc  ggc uug           uggagguuu uccauucg                 a
a   u  uc   a   -----uuaacu         -        gcucauuguauaucugc 

>mtr-MIR2679c (-32.10)   [mtr-miR2679c:21-41]

a   c  -u   aaacccau  UU    -        C        guacuaucacuuuggaa 
 ugg gg  ccg        aC  UUCA CUUUCGAA GGGUGagu                 g
 ||| ||  |||        ||  |||| |||||||| ||||||||                  
 acc cc  ggc        ug  aagu ggagguuu uccauucg                 a
a   u  uc   ------au  uu    u        -        gcucauuguauaucugc 

>mtr-MIR2680a (-42.70)   [mtr-miR2680a:130-149]

a     ucu   ccu   a    uu      -   augcaaaaauauccggauauucccggaggaguuggaugaucuucuguuu 
 uaggg   aga   ggc uauc  cauagg acc                                                 a
 |||||   |||   ||| ||||  |||||| |||                                                  
 guccu   ucu   ucg aUAG  GUAUCC UGG                                                 a
g     -uc   aac   a    UU      A   CUCCUuuuguucgcucuuuaguucuaaccacgaugagaucuccuucccc 

>mtr-MIR2680b (-45.11)   [mtr-miR2680b:131-150]

a     ucu   c u   a    uu      -   augcaaaaauaucuggauauucccggagggaguuggaugaucuucuguu 
 uaggg   aga c ggc uauc  cauagg acc                                                 u
 |||||   ||| | ||| ||||  |||||| |||                                                 a
 guucu   ucu g ucg aUAG  GUAUCC UGG                                                 a
g     -uc   a c   a    UU      A   CUCCUuuuguucgcucuuuaguucuaaccacggugagaucuccuucccc 

>mtr-MIR2680c (-42.70)   [mtr-miR2680c:130-149]

a     ucu   ccu   a    uu      -   augcaaaaauauccggauauucccggaggagcuggaugaucuucuguuu 
 uaggg   aga   ggc uauc  cauagg acc                                                 a
 |||||   |||   ||| ||||  |||||| |||                                                  
 guccu   ucu   ucg aUAG  GUAUCC UGG                                                 a
g     -uc   aac   a    UU      A   CUCCUuuuguucgcucuuuaguucuaaccacgaugagaucuccuucccc 

>mtr-MIR2680d (-40.00)   [mtr-miR2680d:130-149]

a     ucu   ccu   a    uu      -   augcaaaaauauccggauauucccggaggaguuggaugaucuucuguuu 
 uaggg   aga   ggc uauc  cauagg acc                                                 a
 |||||   |||   ||| ||||  |||||| |||                                                  
 guucu   ucu   ucg aUAG  GUAUCC UGG                                                 a
g     -uc   aac   a    UU      A   CUCCUuuuguucgcucuuuaguucuaaccacgaugagaucuccuucccc 

>mtr-MIR2680e (-40.00)   [mtr-miR2680e:130-149]

a     ucu   ccu   a    uu      -   augcaaaaauauccggauauucccggaggaguuggaugaucuucuguuu 
 uaggg   aga   ggc uauc  cauagg acc                                                 a
 |||||   |||   ||| ||||  |||||| |||                                                  
 guucu   ucu   ucg aUAG  GUAUCC UGG                                                 a
g     -uc   aac   a    UU      A   CUCCUuuuguucgcucuuuaguucuaaccacgaugagaucuccuucccc 

>aqc-MIR156b (-44.80)   [aqc-miR156b:1-20]

--         -              u  -   u     u  a 
  UGACAGAAG AUAGAGAGCACaga ga uga augca gg g
  ||||||||| |||||||||||||| || ||| ||||| ||  
  acugucuuc uaucucucguguuu cu acu uacgu cu a
cu         g              c  c   c     -  g 

>aqc-MIR156a (-43.40)   [aqc-miR156a:1-20]

--         -              -  a   au    ug 
  UGACAGAAG AUAGAGAGCACaga ug cga  ugca  g
  ||||||||| |||||||||||||| || |||  ||||  a
  acugucuuc uaucucucguguuu au gcu  acgu  g
cc         g              c  a   cu    uu 

>aqc-MIR159 (-18.80)   [aqc-miR159:50-70]

--    -     c   c     a   ----c   uu a 
  ggag ucuuu cag ccaaa cag     uuc  g u
  |||| ||||| ||| ||||| |||     |||  | c
  UCUC AGGGA GUC GGUUU guc     aag  c u
aA    G     A   A     -   uucaa   uu u 

>aqc-MIR160a (-45.60)   [aqc-miR160a:1-21]

--   C         G       u   ag   cu      g 
  UGC UGGCUCCCU GAUGCCA cua  aag  ugucaa a
  ||| ||||||||| ||||||| |||  |||  |||||| a
  acg acugagggg cuacggu gau  uuc  acaguu u
ag   c         a       u   cu   cc      g 

>aqc-MIR160b (-48.10)   [aqc-miR160b:1-21]

--   C       C           ug uu  u       g 
  UGC UGGCUCC UGUAUGCCAuu  c  ag ccauuua u
  ||| ||||||| |||||||||||  |  || |||||||  
  acg accgagg gcgugcgguag  g  uc gguagau a
au   u       a           gu uu  c       u 

>aqc-MIR166e (-62.40)   [aqc-miR166e:121-141]

--     a      uu           g c   u   uu     cucuuaauugaaacucaaucuauaaccggu 
  uugag ggaaug  gucugguucga g cac aac  aacaa                              u
  ||||| ||||||  ||||||||||| | ||| |||  |||||                               
  aacuC CCUUAC  CGGACCAGGCU c gug uug  uuguu                              a
uu     C      UU           g u   u   -u     uguggucgcucgcguucgcgaaagugaacg 

>aqc-MIR166a (-50.50)   [aqc-miR166a:86-106]

--        g   uu     u                 a  ug  --------u    u 
  ugaggggg aug  gucug uucgaggucauuuagag uu  au         cuuc a
  |||||||| |||  ||||| ||||||||||||||||| ||  ||         |||| a
  acuCUCCU UAC  CGGAC AGGCUccaguaaaucuu aa  ua         gagg a
cg        -   UU     C                 -  gu  uuuuuaugu    u 

>aqc-MIR166b (-44.80)   [aqc-miR166b:68-88]

--   u        uu             c   u  u      - au 
  uug ggggagug  gucugguucgaga cau ca uugaua c  a
  ||| ||||||||  ||||||||||||| ||| || |||||| |  u
  aac CCCCUUAC  CGGACCAGGCUuu gua gu aacugu g  u
uu   c        UU             a   u  c      c au 

>aqc-MIR166c (-46.74)   [aqc-miR166c:89-108]

--     uu             ag  a      u    --gucauc  --a    uuuaa 
  ggugu  ggaaugagguuug  cc agaucc ucca        ca   aaug     u
  |||||  |||||||||||||  || |||||| ||||        ||   ||||      
  ccaca  CCUUACUUCGGAC  GG Ucuagg aggu        gu   uuac     u
ga     uU             CA  C      u    accuugau  aug    uuucu 

>aqc-MIR166d (-45.50)   [aqc-miR166d:105-125]

--   u          -    g  -    gcuagcuaccugcugguagagauguuaggaggaaug 
  gag ggaauggagu uggu ug ugug                                    u
  ||| |||||||||| |||| || ||||                                    u
  cuC CCUUACUUCG ACCA GC auac                                    g
aa   U          G    G  U    guaacuuguguuuuccaagauuucgaagcucgguuu 

>aqc-MIR167 (-31.50)   [aqc-miR167:1-21]

---UC       C          A a        c 
     AAGCUGC AGCAUGAUCU a aaucucug a
     ||||||| |||||||||| | ||||||||  
     uuugacg ucguacuaga u uuaggggu u
uccaa       -          c a        g 

>aqc-MIR168 (-42.73)   [aqc-miR168:2-22]

--    CU      -AG        cugauggcccaccagggccagcagcaaaaccacc 
  uUGG  UAGUGC   CUCGGGGA                                  a
  ||||  ||||||   ||||||||                                   
  aacc  aucaug   gaguuccu                                  a
ua    uu      ggg        caaguuggugcccccuaaguuucacgaccagcac 

>aqc-MIR169c (-47.10)   [aqc-miR169c:5-25]

--    C    -     UG           cgu    aac   g       a    gu 
  aaug AGCC AAGGA  ACUUGCCGGaa   uguu   cau cauauga uaau  g
  |||| |||| |||||  |||||||||||   ||||   ||| ||||||| ||||   
  uuac ucgg uuccu  ugaacggucuu   acaa   gua guguauu auua  a
uu    a    c     gu           uau    ---   -       a    gu 

>aqc-MIR169a (-76.10)   [aqc-miR169a:26-46]

--      -a           u   u   -A        U    U    ----    ----     cu  uuuua g         u 
  gcauga  aguaggaggcg guu agU  GCCAAGGA GACU GCCU    Acca    agggu  ca     a gcauuaucu c
  ||||||  ||||||||||| ||| |||  |||||||| |||| ||||    ||||    |||||  ||     | ||||||||| c
  cguacu  uuauccuccgu cag uca  cgguuccu cuga cgga    uggu    uccua  gu     u cguaauagg u
au      ca           -   u   ac        -    -    uaau    cagc     ag  ----c g         u 

>aqc-MIR169b (-81.10)   [aqc-miR169b:1-21]

--------------------------------UAGCCAAGGAUGACUUGCCUGuauccucu       c   cu  g       cucuauauu        uu   aua 
                                                             uagaggc ggc  gc cgccugu         aucauaca  gga   u
                                                             ||||||| |||  || |||||||         ||||||||  |||    
                                                             aucucug ccg  cg gcggaua         uggugugu  ccu   a
caaucgguuccucugacggauaauugguguguuccuacuauauaagguuacauacuauuau       u   uc  g       -------au        -u   acu 

>aqc-MIR171f (-41.10)   [aqc-miR171f:62-82]

--   a      a ug             a     uu     ua 
  acg gauauu g  cgguucaauuaga aacag  gcuca  a
  ||| |||||| |  ||||||||||||| |||||  |||||  g
  ugc CUAUAA C  GCCGAGUUAAUuu uuguu  cgagu  u
gu   a      C GU             a     -u     uu 

>aqc-MIR171a (-46.34)   [aqc-miR171a:80-100]

--         u       u      uuauauaua      caa        g 
  gauguuggc cgguuca ucagac         uaccac   uguuuaca a
  ||||||||| ||||||| ||||||         ||||||   ||||||||  
  CUAUAACCG GCCGAGU AGUuug         guggug   auaaaugu g
uu         U       U      ----uugac      aaa        a 

>aqc-MIR171b (-36.60)   [aqc-miR171b:55-75]

--        a            a  g    cu    a 
  gguguugg auggcucaauca au aaag  cuca a
  |||||||| |||||||||||| || ||||  |||| g
  CUAUAACC UGCCGAGUUAGU ua uuuc  gggu a
ca        G            c  a    cu    u 

>aqc-MIR171c (-27.30)   [aqc-miR171c:58-78]

--        ca   c       aau    -aa     aa 
  gauauugg  cgg ucaauua   aaca   gcuca  a
  ||||||||  ||| |||||||   ||||   |||||  c
  CUAUAAUC  GCC AGUUAAU   uugu   cgagu  u
cu        AC   A       cuu    caa     au 

>aqc-MIR171d (-39.90)   [aqc-miR171d:84-104]

--         cg             acaagcauuuguaaaagaaugcuauag 
  gauguuggu  gguucaaucagaa                           a
  |||||||||  |||||||||||||                            
  CUAUAACCG  CCGAGUUAGUuuu                           u
uu         UG             cauguggucauuauaccgagacaucuu 

>aqc-MIR171e (-30.99)   [aqc-miR171e:80-100]

--   a     a   c   a   a  ----aacugc      uu a      u 
  gau uuggc cgg uca uca ac          accacu  u uuuaca c
  ||| ||||| ||| ||| ||| ||          ||||||  | ||||||  
  CUA AACCG GCC AGU AGU ug          uggugg  a aaaugu u
ca   C     A   A   A   c  aauauauaua      uu c      c 

>aqc-MIR172a (-44.60)   [aqc-miR172a:98-118]

--    g  cu   ga  c           u  -   -----g    ----ug  g   --au  gc        
  guug cu  uug  ga gcagcaucauc ag uuc      caca      au aug    ag  agugauu 
  |||| ||  |||  || ||||||||||| || |||      ||||      || |||    ||  |||||| a
  cagc ga  gac  cU CGUCGUAGUAG UC AAG      gugu      ua uac    uc  ucacuga 
au    g  uu   ga  A           U  U   Aguaua    ugaaga  g   gcau  ac        

>aqc-MIR172b (-43.70)   [aqc-miR172b:86-106]

--                    a aaa c   -    c       u    uuu   a 
  gugcagcaucauuaagauuc c   c cua agag cuuauga gggu   gau u
  |||||||||||||||||||| |   | ||| |||| ||||||| ||||   |||  
  UACGUCGUAGUAGUUCUAAG G   g gau uuuc ggauauu cuca   cua u
gc                    - gua a   a    a       -    ---   g 

>aqc-MIR319 (-78.60)   [aqc-miR319:155-175]

--  a                 cuc     u    guc          -ug  g   ac        c   g    c    -ua   a a 
  ag gagcucucuucagucca   auagg agua   agauucaauu   cu ccg  ucauucau cau uacc aagu   gua g u
  || |||||||||||||||||   ||||| ||||   ||||||||||   || |||  |||||||| ||| |||| ||||   ||| | g
  UC CUCGAGGGAAGUCAGGU   uguuc ucgu   ucuagguuaa   ga ggc  aguaagua gua augg uuca   uau c g
ca  C                 Uca     u    -au          uua  g   cu        a   a    -    uua   a u 

>aqc-MIR395b (-37.70)   [aqc-miR395b:54-74]

--  ug          -u   g      g  cg  c    g 
  cc  gaguuucucc  gcc cuucag aa  au aauu c
  ||  ||||||||||  ||| |||||| ||  || ||||  
  gg  CUCAAGGAGG  UGG GAAGUC uu  ug uuaa a
gu  gu          UU   -      a  au  u    a 

>aqc-MIR395a (-43.59)   [aqc-miR395a:76-96]

--            -u   g          gaucuauuaauuccu      u 
  uggaguuccucc  gcc cuucaguaau               agcuag u
  ||||||||||||  ||| ||||||||||               ||||||  
  auCUCAAGGAGG  UGG GAAGUCauua               uugauc a
ga            UU   -          --auucuaacaguuu      a 

>aqc-MIR396a (-47.50)   [aqc-miR396a:1-21]

--            C          ugguaaucuaaucuaauacagauaaaauuaagcuug 
  UUCCACAGCUUU UUGAACUGca                                    u
  |||||||||||| ||||||||||                                     
  agggugucgaaa aacuuggcgu                                    u
aa            u          uuccgcuauauggugguaccgugguacaugaacuuc 

>aqc-MIR396b (-38.60)   [aqc-miR396b:1-21]

--          U            -   -cg     uac     gu 
  UUCCACAGCU UCUUGAACUUuu uau   auaca   ucuua  u
  |||||||||| |||||||||||| |||   |||||   |||||   
  agggugucga agaacuugaaaa gua   uaugu   agaau  u
aa          u            u   aaa     ---     au 

>aqc-MIR398a (-42.90)   [aqc-miR398a:66-86]

--  ug    a     a  a            -guu       uucg 
  cc  gagg guggc cu agaacacaggug    gugcgau    a
  ||  |||| ||||| || ||||||||||||    |||||||     
  gg  UUCC CACUG GA UCUUGUGUuuac    uacguua    a
ag  gu    C     -  C            guuu       cuau 

>aqc-MIR398b (-39.20)   [aqc-miR398b:72-92]

--     ua  a           ----     a       u   a agu 
  ggggg  ac ugagaauacau    gaaau gauacua cag g   c
  |||||  || |||||||||||    ||||| ||||||| ||| |    
  UCCCC  UG ACUCUUGUGUa    cuuug cuaugau guu c   a
cG     GC  G           ccuu     a       -   a cuu 

>aqc-MIR399 (-49.80)   [aqc-miR399:72-92]

--          uu   -   g            -  u   -uua u  uu 
  gucguagggc  cuc ccu uuggcagaugau aa ggc    g uc  u
  ||||||||||  ||| ||| |||||||||||| || |||    | ||   
  caguAUCCCG  GAG GGA AACCGUcuauua uu ccg    c ag  c
au          UU   A   -            a  u   ugag u  uc 

>aqc-MIR408 (-46.50)   [aqc-miR408:65-85]

--  c      a       u        a    --aa     au 
  ag caggga gaggcag gcauggaa gagc    caaca  a
  || |||||| ||||||| |||||||| ||||    |||||  u
  UC GUUCCU CUCCGUC CGUaccuu cuug    guugu  u
ug  U      A       U        a    guua     gu 

>aqc-MIR477g (-40.40)   [aqc-miR477g:4-23]

--               UU        -ua    -   a 
  ucgCUCUCCCUCAAG  CUUCUAgu   caua aga u
  |||||||||||||||  ||||||||   |||| |||  
  agugagagggaguuc  gaagauua   guau ucu u
cu               cc        cca    a   c 

>aqc-MIR477f (-40.60)   [aqc-miR477f:8-27]

--   a           C         U   a      gcc 
  uug ucaCUCUCCUU AAAGGCUUC Aac uugccg   a
  ||| ||||||||||| ||||||||| ||| ||||||    
  aac agugaggggaa uuucugaag uug aacggu   a
uu   a           -         c   -      auc 

>aqc-MIR477e (-36.40)   [aqc-miR477e:8-27]

--   a   C           GG      uuagu    u  ag 
  uug uca UCUCCCUCAAG  CUUCUA     caug ag  a
  ||| ||| |||||||||||  ||||||     |||| ||   
  aac agu agagggaguuc  gaagau     guau uc  a
ca   a   a           aa      -caau    -  uu 

>aqc-MIR477a (-38.00)   [aqc-miR477a:1-20]

--        C         U    uug      uauu 
  CUCUCCCU AAGGGCUUC Accu   cccauu    a
  |||||||| ||||||||| ||||   ||||||    a
  ggggggga uucucgaag uggg   ggguaa    g
gg        c         -    ---      ucug 

>aqc-MIR477b (-28.10)   [aqc-miR477b:2-21]

--    U    -    G        cagu     a aa 
  aCUC CCCU CAAG GCUUCUAa    cauuu g  a
  |||| |||| |||| ||||||||    ||||| |   
  ugag ggga guuc cgaagauu    guaga c  a
ua    -    c    a        -aau     - gu 

>aqc-MIR477c (-40.40)   [aqc-miR477c:4-23]

--               UU        -ua    -   a 
  ucgCUCUCCCUCAAG  CUUCUAgu   caua aga u
  |||||||||||||||  ||||||||   |||| |||  
  agugagagggaguuc  gaagauua   guau ucu u
cu               cc        cca    a   c 

>aqc-MIR477d (-24.40)   [aqc-miR477d:1-20]

--        C         U   a    ---a  a 
  CUCUUCUU AAAGGCUUC Aac uugc    ag c
  |||||||| ||||||||| ||| ||||    || c
  gaggggaa uuucugaag uug aacg    uc a
gu        -         c   -    guua  a 

>aqc-MIR482a (-82.90)   [aqc-miR482a:117-138]

--        --u      u  uu   uu          uug      a    -       u   au    au  u     ugau  u  ug 
  ggggaugg   ggaaag ga  gag  augagaagcc   gguaug gagg gucggca ggu  gaug  ga gauga    ga ga  a
  ||||||||   |||||| ||  |||  ||||||||||   |||||| |||| ||||||| |||  ||||  || |||||    || ||  u
  ccccuauu   ccuuuc cu  cuc  uacucuuugg   CCAUAC CUCC CAGCCGU CUa  uuau  cu uuacu    cu cu  g
uc        uuu      c  -u   uu          uaa      C    U       U   au    cu  u     --uu  u  ua 

>aqc-MIR482b (-64.20)   [aqc-miR482b:102-123]

--   uu   uu          uug      a    -       u   au    au  u     ugau  u  ug 
  gga  gag  augagaagcc   gguaug gagg gucggca ggu  gaug  ga gauga    ga ga  a
  |||  |||  ||||||||||   |||||| |||| ||||||| |||  ||||  || |||||    || ||  u
  ccu  cuc  uacucuuugg   CCAUAC CUCC CAGCCGU CUa  uuau  cu uuacu    cu cu  g
uc   -u   uu          uaa      C    U       U   au    cu  u     --uu  u  ua 

>aqc-MIR482c (-81.80)   [aqc-miR482c:117-138]

--     -uggu    a    uu   uu          uug      a    -       u   au    au  u     ugau  u  ug 
  gggga     ggaa ggga  gag  augagaagcc   gguaug gagg gucggca ggu  gaug  ga gauga    ga ga  a
  |||||     |||| ||||  |||  ||||||||||   |||||| |||| ||||||| |||  ||||  || |||||    || ||  u
  ccccu     ccuu cccu  cuc  uacucuuugg   CCAUAC CUCC CAGCCGU CUa  uuau  cu uuacu    cu cu  g
uc     uuuuu    c    --   uu          uaa      C    U       U   au    cu  u     --uu  u  ua 

>aqc-MIR529 (-60.00)   [aqc-miR529:22-42]

--     u       ------   u           -          -A    u  uc  cu    a 
  agaga gagagau      aug ugacAGAAGAG AGAGAGCACA  CCCa ca  ag  aaag g
  ||||| |||||||      ||| ||||||||||| ||||||||||  |||| ||  ||  |||| a
  ucucu cucucua      uac acugucuucuc uuucucgugu  gggu gu  uc  uuuc g
uc     -       aaccac   u           g          ga    u  uu  -u    u 

>aqc-MIR530 (-64.40)   [aqc-miR530:12-31]

--      a              C    A  ----       auacaagauaugaagauauccauaugguuuu 
  uggcau cgucUGCAUUUGCA CUGC UC    UCucaac                               c
  |||||| |||||||||||||| |||| ||    |||||||                                
  accgua gcagacguaaacgu gacg ag    aggguug                               u
cu      a              a    c  aaga       agguugccguuuuauuagccguucuucuucu 

>aqc-MIR535 (-49.16)   [aqc-miR535:1-22]

--                      a  c    u    gcagag 
  UGACAACGAGAGAGAGCACGCG gu ggca ucau      g
  |||||||||||||||||||||| || |||| ||||      a
  acuguugcucucuuucgugcgu ca cugu agua      u
au                      a  u    c    aauaua 

>cte-mir-2e (-42.80)   [cte-miR-2e:61-84]

gcuugcuuuu  -          c    u    ---              cagu 
          gc gaauauucug gcuc gagu   ggcugugauauguu    u
          || |||||||||| |||| ||||   ||||||||||||||     
          cg cuuauaagaC CGGG UUCG   CUGACACUAUacga    g
------cucu  u          U    U    UAA              cuga 

>cte-mir-2f (-27.40)   [cte-miR-2f:53-74]

uuu        c    u   g    uu        -    ug 
   ugagaagu aacc aau cacu  gugaugug cuuu  a
   |||||||| |||| ||| ||||  |||||||| ||||   
   auucuuUA UUGG UUA GUGA  CACUAUgc gagg  a
uac        U    U   G    --        u    uu 

>cte-mir-993 (-22.62)   [cte-miR-993:49-69]

cgc       c      c c      a    uucau 
   auguacc uguaga c ggguuu ugug     g
   ||||||| |||||| | |||||| ||||     u
   uaUAUGG ACAUCU G CUCGAA acau     u
-uu       -      U U      G    ucaau 

>cte-mir-36 (-34.10)   [cte-miR-36:55-76]

-acu    -   ac    -u                 ca    cu  u 
    uaug ucu  uccc  guggguguuaacucggu  gaug  aa u
    |||| |||  ||||  |||||||||||||||||  ||||  ||  
    auac gga  aggG  UACUUACAAUUGGGCCA  CUac  uu u
aaac    c   --    CC                 --    cu  a 

>cte-mir-277a (-37.70)   [cte-miR-277a:74-95]

cua        -  gc        cc        c    ---u   cua  ugcuu 
   cgucacug gu  cguaucag  aaugcauu uaca    guc   gc     c
   |||||||| ||  ||||||||  |||||||| ||||    |||   ||      
   gcagugac ca  GUAUGGUC  UUACGUAA AUgu    uag   cg     u
ucc        u  AU        UA        -    cuuc   cug  ucaca 

>cte-mir-2685 (-29.30)   [cte-miR-2685*:11-33] [cte-miR-2685:54-75]

gcu     au           U GA         uu   gug 
   ugcga  CUUGUGAUCUU C  GGGUUGUAg  gac   u
   |||||  ||||||||||| |  |||||||||  |||    
   acguu  GGACACUAGAA G  CUCAAUauu  uug   u
uuu     CC           U -A         --   guu 

>cte-mir-10c-as (-28.30)   [cte-miR-10c-as:9-29]

uaa    gU  A         -A        auuu a 
   ccau  AC CUGUAGAAU  GGCUUGUg    c a
   ||||  || |||||||||  ||||||||    | u
   ggua  ug gacaucuug  ucgaacac    g u
acg    ac  g         gc        aacu a 

>cte-mir-2686a (-32.00)   [cte-miR-2686a*:14-36] [cte-miR-2686a:49-70]

ga -         -uA         C   U     A   uuu 
  c cgauuugag   CCUAUAUUG GAA CAUCU UCc   c
  | |||||||||   ||||||||| ||| ||||| |||   a
  g gcugaauuc   GGAUGUAAC CUU GUAGA Agg   a
-a c         UUC         U   -     -   cua 

>cte-mir-2686b (-20.20)   [cte-miR-2686b:45-67]

uuu   -u    u    u     c    a   uuau 
   uag  gccu uaua ggaac aucu ucc    a
   |||  |||| |||| ||||| |||| |||    u
   guC  CGGA GUAU UCUUG UAGA Agg    c
cuu   CU    U    U     -    -   uuag 

>cte-mir-2686c (-28.30)   [cte-miR-2686c:55-75]

uau        -        u      g  c  -    -aa u 
   cacaagaa ccuauauu gggaca cu uc augg   c c
   |||||||| |||||||| |||||| || || ||||   |  
   guguucuU GGAUGUAA UCUUGU GA ag uacu   g u
guc        U        U      A  A  a    aua u 

>cte-mir-2687 (-45.50)   [cte-miR-2687:9-30]

     c      UA   G            -  --c    cg 
cccuu gaUAGG  GUC CUCUGGGUUACU gu   gggu  u
||||| ||||||  ||| |||||||||||| ||   ||||   
gggaa cuaucc  cag gggacucgguga cg   ccca  u
     c      cc   g            a  uuu    ua 

>cte-mir-2688 (-37.30)   [cte-miR-2688*:15-37] [cte-miR-2688:52-72]

ucg   u   g      C      U     A       ccaa 
   gag cag augGCG UGGUUU ACUGA GUUGUGg    c
   ||| ||| |||||| |||||| ||||| |||||||     
   cuc guc uACCGC ACCAGA UGACU CAAUacu    a
uca   -   a      -      C     -       ccaa 

>cte-mir-2689 (-44.80)   [cte-miR-2689:54-76]

auu    uu       c  -  -  c  u         u    cuu 
   gucg  uccgaau ag gc cu gc ggccaggau cggg   a
   ||||  ||||||| || || || || ||||||||| ||||    
   cagc  aggcuua UC CG GA CG CCGGUCCUA gcuc   u
uuc    --       C  A  U  A  U         U    cuu 

>cte-mir-2690 (-38.60)   [cte-miR-2690:58-80]

cau          g   a  u    a  -     c      -a   ca 
   uagagguugu uac ac cugg cc cacuu cauaca  uga  g
   |||||||||| ||| || |||| || ||||| ||||||  |||   
   gucuucaaca aUG UG GACC GG GUGAA GUGUgu  gcu  c
ucc          a   G  U    -  A     A      aa   ua 

>cte-mir-2691 (-38.30)   [cte-miR-2691*:13-34] [cte-miR-2691:57-79]

c          c A G    G    C         g   c   u 
 uacugcaggc G C GUGA ACUU UGCAAAGCc ugu auu g
 |||||||||| | | |||| |||| ||||||||| ||| |||  
 auggcgucUG C G CACU UGAA ACGUUUUgg aca uaa c
u          U C A    A    -         -   a   a 

>cte-mir-1990a (-29.60)   [cte-miR-1990a:7-28]

cgca    U        A       A   ccaa   ca 
    guUG AAGUUGAC UAGUCCC GGg    gua  g
    |||| |||||||| ||||||| |||    |||   
    cgac uucaauug aucaggg ccc    cgu  c
-cuc    c        c       -   --aa   ag 

>cte-mir-1990b (-36.00)   [cte-miR-1990b:19-40]

cuc      c      u U            U  -    GUuuucaca 
   ugcuca acagug c AAGUUGACGUAG CC CAGG         a
   |||||| |||||| | |||||||||||| || ||||         u
   acgggu uguuac g uucgacugcauu gg guuc         c
guc      -      c u            -  u    agaacuuau 

>cte-mir-1990c (-30.70)   [cte-miR-1990c*:50-71]

  a  c  g     a          -    ----    u 
cg gg ug aaguu acguaguccc gggu    ugca c
|| || || ||||| |||||||||| ||||    ||||  
gc uC AC UUCAA UGUAUCAGGG cccg    augu g
  g  A  A     C          U    guuc    c 

>cte-mir-2692 (-30.30)   [cte-miR-2692:50-72]

-   uag  a   u   c   cu        uua    uuu 
 uca   ca gcg ugg guc  cguugacu   guga   c
 |||   || ||| ||| |||  ||||||||   ||||   u
 agu   gu CGC ACC CAG  GUAACUGA   Cacu   u
g   uca  c   C   A   UU        --C    uag 

>cte-mir-2693 (-37.22)   [cte-miR-2693:48-69]

cg  -       ga                   ucgaa 
  ug ggucuca  aauuguauacuagacuagu     g
  || |||||||  |||||||||||||||||||     u
  ac cuagGGU  UUGACAUGUGAUCUGAUcg     c
-g  u       AC                   uuuau 

>cte-mir-1991 (-28.42)   [cte-miR-1991:12-35]

cca         --    C   U      U       uuguu 
   ucaauucuU  UACC UGU ACAUUG AGAAUGC     a
   |||||||||  |||| ||| |||||| |||||||     u
   gguuaagaa  augg aca uguaac ucuuaug     u
-ga         uu    a   -      -       uuucc 

>cte-mir-996 (-42.50)   [cte-miR-996:44-65]

auu                c        g    u u 
   ggcggaggcgggugug ugucuggu cgug g u
   |||||||||||||||| |||||||| |||| | u
   ccgucUCUGCUUACAC AUAGAUCA GUac c c
ucu                A        -    - a 

>cte-mir-2694 (-50.60)   [cte-miR-2694:49-70]

uag  -  a           ag                  cc 
   gc gc cucgagugagg  uaauguuucaaagcaguu  u
   || || |||||||||||  ||||||||||||||||||   
   cg cg ggguucACUCC  GUUACGGAGUUUCGUcag  u
uaa  u  g           CU                  uu 

>cte-mir-2720 (-39.80)   [cte-miR-2720*:17-38] [cte-miR-2720:64-85]

cu      c g    uC       U G      AC    u a   c  a 
  gacugc u ucug  UGGGUAA C CUCUAG  CAUg g ugu gc u
  |||||| | ||||  ||||||| | ||||||  |||| | ||| || g
  cugaug a agaC  ACUCAUU G GAGAUC  GUac c gcg cg c
cu      - g    CU       U A      -A    u -   a  u 

>cte-mir-2695 (-36.19)   [cte-miR-2695:17-39]

gaa     ug c       G     A    -A        aaacuuu 
   ggugg  u ugguGAG ACUUG GGGA  CAGUUAGU       g
   |||||  | ||||||| ||||| ||||  ||||||||        
   ccacc  a guuacuc ugaac cucu  gucaauca       c
gca     cu c       -     -    cg        aaguuaa 

>cte-mir-2696 (-40.01)   [cte-miR-2696:13-33]

cag     g      -G      A        -------   uc 
   agcgg gcgUGG  UUUGUA UGUGGUCA       UGc  a
   ||||| ||||||  |||||| ||||||||       |||   
   ucgcc cguacc  aaacgu acaccagu       acg  a
uug     a      ga      g        ccccuuu   uc 

>cte-mir-2697 (-30.60)   [cte-miR-2697:14-35]

   u    gg   A C        U C C      uugc 
aag agcu  cug G UAUGUCCA C G CAUCCG    a
||| ||||  ||| | |||||||| | | ||||||     
uuc ucga  gac c auacaggu g c guaggc    a
   -    aa   a u        c a u      uagu 

>cte-mir-2g (-38.40)   [cte-miR-2g:48-70]

ugu   -    u   c c     c    -           cu 
   gca uggc cac g ggucu agcg ucuguggugcg  g
   ||| |||| ||| | ||||| |||| |||||||||||  a
   ugu gucg gug C CUAGG UCGC AGACACUAUgc  a
uag   u    c   A A     U    C           uu 

>cte-mir-2698 (-23.10)   [cte-miR-2698:48-71]

-  a       aac   u    -   u       c   u 
 ug cugcaug   ugu gaag gag uucaugc ucg g
 || |||||||   ||| |||| ||| ||||||| ||| u
 ac ggCGUGU   GUA CUUC CUU GAGUacg agu a
a  -       -CA   C    U   C       -   c 

>cte-mir-2699 (-30.80)   [cte-miR-2699*:15-36] [cte-miR-2699:51-72]

ucu  c   -a    AAC     C              uuau 
   cg gug  aauc   GGCCG AUAUUAUAAAUCAc    u
   || |||  ||||   ||||| ||||||||||||||     
   gc cac  uuAG   CCGGC UAUAGUGUUUGgug    u
aau  u   ca    AAU     U              uaag 

>cte-mir-2700 (-37.86)   [cte-miR-2700:16-37]

aug  g         U        U  C          ucaaac 
   ca ggguucuga UUUGCAAA UU AGAUUCAUUg      u
   || ||||||||| |||||||| || ||||||||||      g
   gu cccaggauu agacguuu aa ucuaaguaac      c
ucg  g         u        u  u          ccucag 

>cte-mir-2701 (-31.10)   [cte-miR-2701:9-30]

 ug     CC   A   C   C        guc  a 
u  cauug  CGC UUG CAU GGCGCCUG   ug u
|  |||||  ||| ||| ||| ||||||||   ||  
a  guaac  gcg aac gua cuguggac   ac u
 gu     au   a   u   a        -ac  u 

>cte-mir-2702 (-37.09)   [cte-miR-2702:22-43] [cte-miR-2702*:60-80]

aca       uu        c        C            Cuuuaua 
   auuugug  uaagcgcu UAUAUUUC AUUACCUGAAUG       a
   |||||||  |||||||| |||||||| ||||||||||||        
   uaaacau  guucguga AUGUAAAG UAAUGGACUUGc       c
cuc       --        C        A            accacgg 

>cte-mir-2703 (-34.60)   [cte-miR-2703*:17-40] [cte-miR-2703:54-75]

gac       -  gac                UC   C   g uc 
   ggaacca gu   uUGAGCUUACGAAUCA  AGC AUU c  g
   ||||||| ||   ||||||||||||||||  ||| ||| |  c
   cuuuggu cg   GACUCGAAUGUUUAGU  UCG Uaa g  u
aaa       g  gaC                -U   -   a uu 

>cte-mir-2704 (-25.80)   [cte-miR-2704:17-38]

aac  a u     uu    U   A  U  A C       u      
   ga g ccauu  aACA GCA AA UG C CGGGUUu aguug 
   || | |||||  |||| ||| || || | ||||||| |||| a
   cu c gguag  uugu cgu uu ac g gcccaag uuaga 
uca  c -     uc    u   c  u  c a       -      

>cte-mir-216c (-32.50)   [cte-miR-216c:58-79]

uag    c          u     aa       -c  cu  c 
   ucgu uaaucucaac gguaa  uugagcu  ug  gc u
   |||| |||||||||| |||||  |||||||  ||  || g
   agcG AUUAGGGUUG UCAUU  AACucgg  ac  cg u
uga    U          U     -G       aa  cu  c 

>cte-mir-2705 (-38.10)   [cte-miR-2705:56-78]

aca      u g        -       -   guu    a   --u  c 
   ugcgcu u agguuggg agcacuu gcc   ugca aug   ug c
   |||||| | |||||||| ||||||| |||   |||| |||   ||  
   gcguga a uucaACCU UCGUGAA UGG   ACGU Uac   ac u
caa      u g        G       A   --A    C   uuu  u 

>cte-mir-210b (-29.70)   [cte-miR-210b:51-72]

ug  a ug  ---       c  c       a   --     u 
  uc c  ca   guugcug uu augcaca gca  uuaug a
  || |  ||   ||||||| || ||||||| |||  |||||  
  ag g  gu   CAGCGAC AA UGCGUGU Cgu  aauac a
-g  - gu  UUC       A  A       -   cc     u 

>cte-mir-2706 (-34.80)   [cte-miR-2706:53-74]

gau      g     u     c ug     ---     ugua 
   gggguc agugc ggaag u  uaucu   auguc    a
   |||||| ||||| ||||| |  |||||   |||||    u
   uuccag UCACG CCUUC A  AUAGA   uauag    u
guc      g     U     C GU     AGu     uaac 

>cte-mir-2707 (-32.00)   [cte-miR-2707:52-75]

cug    u   g gc      --      u        g  gca 
   ugug aaa u  cuguca  agcuga uaaguauu au   a
   |||| ||| |  ||||||  |||||| |||||||| ||    
   acac uuu g  GACAGU  UCGACU AUUCAUAa ua   c
uca    c   g UU      CU      U        g  gca 

>cte-mir-277b (-30.60)   [cte-miR-277b:52-73]

 ug   c    g         a        -   cgu  u 
c  ggu agug cagggugug cauuugca aug   ua g
|  ||| |||| ||||||||| |||||||| |||   ||  
g  cuA UCAC GUCUUAUAC GUAAAUgu uac   au a
 gu   A    G         -        c   --u  u 

>cte-mir-2708 (-32.10)   [cte-miR-2708:50-70]

  u  c    g               a     gg  cuu 
cg gc gcuc ccaauuuuauuaaau uucua  ug   u
|| || |||| ||||||||||||||| |||||  ||    
gc cg ugaG GGUUAGAAUAAUUUA AAGau  ac   g
  u  u    G               G     -a  aaa 

>cte-mir-2721 (-21.40)   [cte-miR-2721:10-31]

agauugaaaG        A  C  UC  G     ug  uc 
          UGGUUUUG UG CA  UU GAuug  gc  a
          |||||||| || ||  || |||||  ||   
          gccggaac gc gu  ag uuaac  ug  a
---gagugaa        -  a  ca  g     gu  uu 

>cte-mir-2709 (-24.30)   [cte-miR-2709:7-28]

cucu    U UG  U           --U     a 
    aaUG U  AA UAGCUGUGAUG   Gcuuu g
    |||| |  || |||||||||||   ||||| u
    uuac a  uu aucgacacuau   ugaag u
-auu    u gu  u           ucu     u 

>cte-mir-2710 (-34.20)   [cte-miR-2710:9-29]

cag      -  AC            G    uuau 
   cagggU CC  UGUACCGUAUUG CCCu    u
   |||||| ||  |||||||||||| ||||     
   guccca gg  acauggugugac ggga    c
gga      a  ga            -    uagu 

>cte-mir-2711 (-28.30)   [cte-miR-2711:16-38]

caa     c    uaU        UU          C uac  a 
   gcaga agug   UGGUGUAA  AUGAUGUCUU G   gu a
   ||||| ||||   ||||||||  |||||||||| |   ||  
   ugucu uuac   accacauu  ugcuacggaa c   ca a
ggc     -    ugc        --          u -ua  u 

>cte-mir-2712 (-38.10)   [cte-miR-2712:13-33]

u    u   ga       GGA     -A      ga    
 gguu agu  gGACGUU   CCGGC  GCCGGC  ggu 
 |||| |||  |||||||   |||||  ||||||  || u
 cuag uca  cuugcag   ggcug  cggucg  ccu 
a    u   ag       aag     aa      ag    

>cte-mir-2713 (-28.60)   [cte-miR-2713:10-33]

gua     a    U   GGG     ---         -a  c  a 
   gaugc UGCG CGC   CUUCA   UUGAAGGUu  gg ag u
   ||||| |||| |||   |||||   |||||||||  || ||  
   uuaug augc gcg   ggagu   gacuuccaa  cc uc g
-cc     -    u   ---     uga         ca  c  u 

>cte-mir-2714 (-47.60)   [cte-miR-2714:59-79]

gcg       -c      -  -     -     --g     g     a 
   gcagcgg  agcacu cu cagcg uuugu   gcugc gcgag g
   |||||||  |||||| || ||||| |||||   ||||| |||||  
   cgucguc  uCGUGA GA GUUGC GAGCG   cgacg cguuc c
caa       ua      C  C     C     Ugg     a     g 

>cte-mir-2715 (-32.80)   [cte-miR-2715:14-37]

-c a       -   UU      U       ---  --C     cg g 
  g ggauuuu guu  UCCUCU CGUCUUU   UG   CUCUG  u a
  | ||||||| |||  |||||| |||||||   ||   |||||  |  
  c ccuagag cag  aggaga gcagaag   ac   gagac  g a
ga -       u   uc      c       gua  auu     ug a 

>cte-mir-2716 (-29.90)   [cte-miR-2716:56-77]

uga  c          a    ac     ------gaa   aa 
   cc ugaucuuccc gcau  cucau         guc  c
   || |||||||||| ||||  |||||         |||  a
   gG ACUGGAAGGG UGUA  GAGug         cag  a
aga  C          C    GA     accaauaaa   cu 

>cte-mir-2717 (-25.99)   [cte-miR-2717:9-31]

cau   -  -     A     --G  GA    A  gagauac 
   ggu gc AGACG CGUCU   GU  UGCG UG       a
   ||| || ||||| |||||   ||  |||| ||        
   cca cg ucugc gcaga   cg  acgu ac       g
auu   a  g     -     aga  -a    g  aagaaca 

>cte-mir-2718 (-31.40)   [cte-miR-2718:8-31]

ccc  -              GA     GUCC    gc a 
   cg gaUGCCAACGGCUC  GGAAU    Uggg  c c
   || ||||||||||||||  |||||    ||||  |  
   gc uugugguuguugag  ucuug    accc  g u
caa  a              -g     --aa    aa u 

>cte-mir-2719 (-36.40)   [cte-miR-2719:14-35]

gaa  g         - C      AG    A       cgcg 
   ga cgcucauUG G UUUUGU  GAUG UCAUUgg    u
   || ||||||||| | ||||||  |||| |||||||    g
   cu gcgggugac c aaaaca  cuac aguaacc    c
-uc  g         u c      cu    a       uauu 

>hsv1-mir-H7 (-46.80)   [hsv1-miR-H7:14-34] [hsv1-miR-H7*:51-71]

--             AA       U CAA       -   uc 
  gaagaggggggag  AGGGGUC G   CCAAAGG ugg  u
  |||||||||||||  ||||||| |   ||||||| |||  g
  cuucucccuuCUU  UCCCCAG C   GGUUUcc gcc  g
cu             -C       C CUA       u   ug 

>hsv1-mir-H8 (-35.60)   [hsv1-miR-H8:10-29] [hsv1-miR-H8*:48-67]

-gucc              U A      U   caccc 
     cuguaUAUAUAGGG C GGGGGU Ccg     c
     |||||||||||||| | |||||| |||      
     gauAUAUAUGUCCC G CCCCCG ggu     c
cuguu              U G      c   acaau 

>lgi-mir-2722 (-42.50)   [lgi-miR-2722:50-71]

guu    c      ag         aua        a  gg 
   gacc cacugg  agguguuuc   ggcgcuac gu  a
   |||| ||||||  |||||||||   |||||||| ||  a
   uugg gugauC  UCUACAAAG   CCGCGGUg ca  g
aug    c      CA         GUG        -  gu 

>bmo-mir-2723 (-24.60)   [bmo-miR-2723:52-70]

-   ga  ca   -a      caauc    -ug   a    uggg 
 cug  ua  agc  gcagac     guuc   gcu ggcu    g
 |||  ||  |||  ||||||     ||||   ||| ||||     
 gau  au  ucg  UGUCUG     CAGG   CGA Cuga    u
a   ag  ag   gG      -----    UGA   C    ugga 

>bmo-mir-2724 (-37.00)   [bmo-miR-2724:8-27]

cc    a   CCC  U  GAU       u   g  uau    uu     
  gagc UCC   GG GU   AGCUCCc gcc ga   cugc  caca 
  |||| |||   || ||   ||||||| ||| ||   ||||  ||| c
  cuug agg   cc ca   ucgaggg cgg cu   gacg  guga 
-a    c   --u  u  gcc       -   a  ---    -u     

>bmo-mir-2753 (-22.20)   [bmo-miR-2753:52-71]

-------------------------------------------aacugaagucc    --     ccc     uu 
                                                      cucc  gcaga   agagg  c
                                                      ||||  |||||   |||||  c
                                                      gagg  ugucu   ucucc  g
auggccgaagaagguaaugguuuaugguaaguuuAUGGUCGAAGAAGGUAAACU    ua     ---     cg 

>bmo-mir-2729 (-26.60)   [bmo-miR-2729:31-50]

a     cauuuau c g   u a    c     UU   A  U   --    Uc 
 gcaag       g u gag g guaa agAUU  AUG GG CGG  UCCA  g
 |||||       | | ||| | |||| |||||  ||| || |||  ||||   
 cguuc       c a cuc c cguu ucuag  ugc cc gcu  aggu  u
a     --ccuuu - g   - -    u     --   g  u   ag    ug 

>bmo-mir-2731-1 (-29.40)   [bmo-miR-2731:13-33]

aa    -aac     C A  C --A    AU      --         a 
  accu    agaUG G GA C   UGGU  GUGGAa  auaaaagcc c
  ||||    ||||| | || |   ||||  ||||||  |||||||||  
  ugga    ucuac c cu g   acca  caccuu  uauuuuugg c
-g    gccc     a -  a aaa    --      uc         c 

>bmo-mir-2731-2 (-26.80)   [bmo-miR-2731:13-33]

aa    -aac     C A  C --A    AU      --         a 
  accu    agaUG G GA C   UGGU  GUGGAa  auaaaagcc c
  ||||    ||||| | || |   ||||  ||||||  |||||||||  
  ugga    uuuac c cu g   acca  caccuu  uauuuuugg c
-g    gccc     a -  a aaa    --      uc         c 

>bmo-mir-2733a-1 (-31.00)   [bmo-miR-2733a:52-73]

uu     c  a           ca u      u    -u     
  ucucu ua uacagucauca  c cucagu gaua  gugu 
  ||||| || |||||||||||  | |||||| ||||  ||| a
  agaga au gUGUUAGUAGU  G GGGUCA CUau  uaca 
-u     c  g           AC U      -    cu     

>bmo-mir-2734 (-25.40)   [bmo-miR-2734:13-33]

c   uuu   -  -       UGU     A UC  --   u     u 
 agu   aga gc UUUGUCG   CUGGU G  GC  guu uccuu u
 |||   ||| || |||||||   ||||| |  ||  ||| |||||  
 ucg   ucu cg gaacagc   ggcca u  ug  cga aggag a
c   uuu   u  u       ---     a uu  au   u     g 

>bmo-mir-2736 (-24.40)   [bmo-miR-2736:4-29]

u  UA  ---AAAA          A  AGCA     uu  a  ua 
 gu  CC       CGUCGAUGGU CC    Gagcc  gu uc  c
 ||  ||       |||||||||| ||    |||||  || ||   
 ca  gg       gcaguugcua gg    uucgg  cg gg  g
u  gg  cgcgacc          -  --gc     --  a  uc 

>bmo-mir-2737 (-19.80)   [bmo-miR-2737:16-36]

cu   ---     uaugu        U   C   UU    c  c 
  gug   gcguc     UUUUAUAC GUC AGA  UGUg ug c
  |||   |||||     |||||||| ||| |||  |||| ||  
  cac   cgcag     aaaaugug uag uuu  auac au u
-c   uua     ---uu        u   c   uu    c  u 

>bmo-mir-2738 (-15.93)   [bmo-miR-2738:61-84]

-      --------------    c  aau    aa      uuaccauu      -  --    u 
 auucuc              ugau ua   gaug  uguucu        aaaaga cu  gaua g
 ||||||              |||| ||   ||||  ||||||        |||||| ||  ||||  
 uaaggg              acua GU   CUAC  GCAAGA        UUUUCU ga  uuau a
a      uuuaaaucaaaaau    a  AGU    CG      --------      A  ag    a 

>bmo-mir-2739 (-37.20)   [bmo-miR-2739:13-38]

  ug     c  --GAG   U    AU         GA Gg  a   a  g 
gc  caccu gg     AUG GGAU  UAUGGUGUG  G  au gaa cc c
||  ||||| ||     ||| ||||  |||||||||  |  || ||| ||  
cg  gugga cc     ugc ucug  guaccauac  c  ua uuu gg g
  gu     -  aucaa   -    --         aa uu  a   c  u 

>bmo-mir-2733b-1 (-34.90)   [bmo-miR-2733b:50-71]

uc      a            a u      u    -u     
  ucucua uauagucaucac c cucagu gaua  gugu 
  |||||| |||||||||||| | |||||| ||||  ||| a
  agagau gUGUUAGUAGUG G GGGUCA CUau  uaca 
-u      g            C U      -    cu     

>bmo-mir-2742 (-12.80)   [bmo-miR-2742:43-61]

u    augu      acu  ug  u     a   u 
 gaga    cauuag   uc  au gaaaa cuu g
 ||||    ||||||   ||  || ||||| |||  
 uucu    GUGAUU   AG  UA CUUUU gaa u
u    -gUU      ---  GU  -     a   a 

>bmo-mir-9c (-54.00)   [bmo-miR-9c*:27-44] [bmo-miR-9c:61-82]

ca   -  - c  -gg            cU          C     G    c  g 
  gcg cg c ga   gucgcgggccgu  CUUUGGUAUC UAGCU uagg gu c
  ||| || | ||   ||||||||||||  |||||||||| ||||| |||| || g
  ugc gc g cu   cagugcucggcA  GAAGCCAUGG AUUGA AUcc cg c
-c   a  u a  aug            UU          U     A    -  g 

>bmo-mir-2744 (-36.90)   [bmo-miR-2744:86-103]

uc   a  -    c  cc  g   uc   au         ---gug   gg    aag 
  ggc gc agcu ag  uu uca  guc  cgaaugccg      guu  ccug   g
  ||| || |||| ||  || |||  |||  |||||||||      |||  ||||    
  ccg uG UCGA UC  GA AGU  Uag  gcuuauggc      cgg  ggac   c
-a   c  A    -  CU  G   -U   --         augaua   ag    aug 

>bmo-mir-2745 (-43.00)   [bmo-miR-2745:47-65]

a     g      -        uu        u   uuu 
 gugcc uugaug gcccgaaa  ccgaauuu agc   a
 ||||| |||||| ||||||||  |||||||| |||   u
 cacgg aacuau CGGGCUUU  GGCUUAAA Ucg   u
c     a      a        CU        -   uaa 

>bmo-mir-2748 (-30.71)   [bmo-miR-2748:26-47]

ucggaaac     ccacuga    aU -       -----A       G       
        gcgac       gaag  C CGGCGAG      AAACUCA UGGGcu 
        |||||       ||||  | |||||||      ||||||| ||||| g
        cgcug       cuuc  g gccgcuc      uuugggu aucugu 
---gcgaa     -------    cc a       cuacaa       -       

>bmo-mir-306 (-61.90)   [bmo-miR-306:29-49] [bmo-miR-306**:63-83]

cc     agac ga      c g    -  C      U     A       --  g 
  gcggg    g  ggcggg g ccgc cU AGGUAC AGGUG CUCUGAg  ug u
  |||||    |  |||||| | |||| || |||||| ||||| |||||||  ||  
  cgccu    c  ccgccu c ggcg GA UCCGUG UCCGC GAGACuc  gc g
-c     -gca ag      - g    c  C      C     C       ug  c 

>bmo-mir-2751 (-37.40)   [bmo-miR-2751:80-99]

a   auc   u     -a  c     cuc  cg     g     aa  -ac   a 
 ccu   gag augcu  gc gccua   ac  cagcg agcgc  cu   ucu c
 |||   ||| |||||  || |||||   ||  ||||| |||||  ||   ||| u
 gga   cUU UGCGA  UG CGGGU   UG  gucgu ucgcg  gg   aga a
c   ---   -     GG  C     --C  au     -     aa  gca   c 

>bmo-mir-2752 (-69.20)   [bmo-miR-2752:20-39]

gg  -a     ---     c  uC    CA     --------   A         - ga        --au    c 
  gu  acgcc   gcgga ug  UCAA  CGAUG        GCC CGGAgccgu c  cguccccg    ccag a
  ||  |||||   ||||| ||  ||||  |||||        ||| ||||||||| |  ||||||||    |||| g
  ca  ugugg   cgccu ac  aguu  gcugc        cgg gccucggca g  gcaggggu    gguc u
-g  gg     uac     c  -c    -a     agcgacag   c         u aa        ggcu    c 

>bmo-mir-989 (-37.80)   [bmo-miR-989:56-76]

g       g    a  gg       c     -gu     g  - au 
 guucagg uuga au  ccauuac ucaca   cacgu gu c  g
 ||||||| |||| ||  ||||||| |||||   ||||| || |   
 uaggucc agcu ug  GGUGAUG AGUGU   GUGca ca g  a
a       -    c  AA       C     AGU     a  u gu 

>bta-mir-1388 (-43.26)   [bta-miR-1388-5p:17-37] [bta-miR-1388-3p:56-77]

-ccu      ug    - A  A   U C         A  gugagc 
    gggcgg  ccuu c GG CUG C AACCUGAGA Ug      a
    ||||||  |||| | || ||| | ||||||||| ||      u
    ccugcc  ggaA G CC GAC G UUGGACUCU ac      c
cucc      gu    C C  -   U U         A  agggac 

>bta-mir-1468 (-39.40)   [bta-miR-1468:21-42]

guugaaga        gu  C         C           -----u   c 
        ggugggug  uu UCCGUUUGC UGUUUUGCUGA      guu a
        ||||||||  || ||||||||| |||||||||||      ||| u
        cuaccuac  aa agguaaacg auaaaacgacu      cag u
-----caa        uu  a         a           cuuauu   u 

>bta-mir-194-1 (-45.20)   [bta-miR-194:21-42]

uucuuaac   -        uU         A      G    cu  gc 
        ggc gucaucga  GUAACAGCA CUCCAU UGGA  gu  g
        ||| ||||||||  ||||||||| |||||| ||||  ||   
        ccg cgguaguu  cauugucgu gaggug accu  ua  u
ucacuuaa   u        uu         a      -    -u  ac 

>bta-mir-19b-2 (-33.20)   [bta-miR-19b:56-78]

acugcuacu               -   -      uuu    -    g 
         uacaguuaguuuugc ugg uuugca   cagc gugu g
         ||||||||||||||| ||| ||||||   |||| ||||  
         guguuAGUCAAAACG ACC AAACGU   GUcg uaua a
---------               U   U      ---    g    u 

>bta-mir-219-2 (-46.00)   [bta-miR-219-5p:13-34] [bta-miR-219-3p:56-76]

-      c     U   U     AA           uac a  c 
 gagcuu gccac GAU GUCCA  CGCAAUUCUUg   g gu u
 |||||| ||||| ||| |||||  |||||||||||   | || g
 cucgag cgguG CUA CAGGU  GUGUUAAGAgc   c cg c
u      u     U   -     CG           caa -  g 

>bta-mir-320-1 (-42.30)   [bta-miR-320:56-77]

cccgcggcgucucgcuccccuc         uu       c      g 
                      cgccuucuc  cccgguu uucccg a
                      |||||||||  ||||||| ||||||  
                      GCGGGAGAG  GGGUCGA AAgggc g
----------------gaaaaA         UU       A      u 

>bta-mir-424 (-45.90)   [bta-miR-424:21-41] [bta-miR-424*:58-78]

ucguuga   -       a  C      AA             g  cu 
       cuc cgagggg ug AGCAGC  UUCAUGUUUUGAa ug  u
       ||| ||||||| || ||||||  ||||||||||||| ||  u
       gag guucccc aU UCGUCG  GAGUGCAAAACuu gc  a
--ugaag   c       c  A      CG             g  aa 

>bta-mir-450-1 (-25.90)   [bta-miR-450:6-27]

-----------------     UUU     U              cag 
                 acuau   UGCGA GUGUUCCUAAUAUg   u
                 |||||   ||||| ||||||||||||||   a
                 uggua   acguu uacgaggguuauau   u
gacauauaacuauguuu     cgu     u              aaa 

>bta-mir-542 (-35.00)   [bta-miR-542-5p:21-42]

--au  aca ac       auc    GG    UCA         -a   c 
    gc   g  cucagac   UCGG  AUCA   UGUCACGAG  uac a
    ||   |  |||||||   ||||  ||||   |||||||||  |||  
    cg   c  gggucug   aguc  uagu   acaguguuc  gug c
uacu  --c ga       gaa    aa    uag         ac   u 

>dpu-bantam (-36.20)   [dpu-bantam:61-83]

----uc    uuuaaa  u     c        u         gc    u   a 
      ggcu      cc cgaga uaguuuuc cagugaucu  caga auu u
      ||||      || ||||| |||||||| |||||||||  |||| ||| u
      ccga      gg guuUU GUCGAAAG GUUACUAGA  GUcu uaa u
ucagcu    ----ua  u     A        U         --    u   g 

>dpu-mir-1 (-43.30)   [dpu-miR-1:58-79]

-- c    u     gg            c    uuc     ------   a 
  g gccu ggcgu  guuccgugcuuc uuac   ccaua      guc a
  | |||| |||||  |||||||||||| ||||   |||||      |||  
  c cggg ccgua  cGAGGUAUGAAG AAUG   GGUau      cag a
ua -    -     aa            A    UAA     gcaaaa   u 

>dpu-mir-10 (-42.40)   [dpu-miR-10:20-41]

----   cauc           cU   -  G    U          ag   c 
    guu    augcucuacau  ACC CU UAGA CCGAAUUUGU  uug a
    |||    |||||||||||  ||| || |||| ||||||||||  ||| u
    cga    uacggggugug  ugg ga aucu ggcuuaaaca  aac c
acau   caaa           cu   a  g    u          -g   a 

>dpu-mir-100 (-25.20)   [dpu-miR-100:21-43]

aacuuacguugacucgcuc A    G    UC  A       -----------        ca 
                   g ACCC UAGA  CG ACUUGUG           Ugugaauu  c
                   | |||| ||||  || |||||||           ||||||||  c
                   c uggg aucu  gc ugaacac           auacuuaa  c
-----------------aa c    a    ua  a       uacaguaguua        ac 

>dpu-mir-12 (-36.90)   [dpu-miR-12:21-43]

--   uuu      -u    cc U    A     UCA         ug   g 
  gau   gguguu  ccgu  g GAGU UUACA   GGUACUGGU  uau u
  |||   ||||||  ||||  | |||| |||||   |||||||||  |||  
  cug   uuacaa  ggca  c cuca aaugu   ccaugacca  gua g
aa   ucu      cu    -a u    c     -ua         ua   c 

>dpu-mir-124 (-28.00)   [dpu-miR-124:61-83]

-----aagacacaca     ccuc           u       u  u   auu a 
               guucu    guguucauugu gugccuu ug auu   g a
               |||||    ||||||||||| ||||||| || |||   |  
               cgaGA    CGUAAGUGGCG CACGGAA ac uag   c u
gcuuacaacccggca     --AC           -       U  -   --g u 

>dpu-mir-133 (-40.30)   [dpu-miR-133:61-82]

---aaa    --   cu   u       c    ucc         u   a     
      caga  gcc  gcu uagcugg ugaa   gggccaaau guu uuca 
      ||||  |||  ||| ||||||| ||||   ||||||||| ||| ||| u
      gucu  cgg  uga GUCGACC ACUU   CCUGGUUua cga gaga 
caacga    ua   -u   U       A    -CC         -   c     

>dpu-mir-137 (-30.00)   [dpu-miR-137:61-82]

--gaaaaugccu     ccu     g           ug  u    - guga 
            uuaga   cggcg guauucucagg  au aaca c    u
            |||||   ||||| |||||||||||  || |||| |     
            aaucu   GUUGC CAUAAGAGUUC  UA Uugu g    a
gccaacaaaaac     -au     A           GU  -    u aaga 

>dpu-mir-153 (-39.24)   [dpu-miR-153:61-82]

auauca    ug cu     c              uu       uaaauu 
      ucug  g  caccu ucauuuuugugauu  ugcaauu      a
      ||||  |  ||||| ||||||||||||||  |||||||       
      agac  u  guggG AGUGAAAACACUGA  ACGUUaa      a
uguuua    gu uc     U              -U       uuaaca 

>dpu-mir-193 (-34.10)   [dpu-miR-193:52-73]

aau            c         ug au   c    gauu 
   guuuuuacuuuu gggauuuag  g  cag uguu    u
   |||||||||||| |||||||||  |  ||| ||||    a
   uaaaagugaaAA CCCUGAAUC  C  GUC AUaa    u
acu            A         GU CG   -    aaug 

>dpu-mir-283 (-43.96)   [dpu-miR-283:25-44]

cugcugauggcuucuga       AA        A    AU      cag  auua      gacuug 
                 uacggcc  AUAUCAGC GGUA  UCUggg   uu    uccuug      a
                 |||||||  |||||||| ||||  ||||||   ||    ||||||      u
                 gugccgg  uauggucg ccgu  agaccc   ag    aggaac      u
-----------------       ac        g    -c      --a  ---a      auaaaa 

>dpu-mir-219 (-34.44)   [dpu-miR-219:21-42]

---uucuaaa    u      cc    U    AA     A      uacaaa 
          acgu gcaggc  UGAU GUCC  ACGCA UUCUUg      u
          |||| ||||||  |||| ||||  ||||| ||||||       
          ugca cguucg  gcua cggg  ugugu aagaac      a
cuacuaaaua    -      uu    -    ga     a      uauaau 

>dpu-mir-745 (-41.20)   [dpu-miR-745:56-77]

-    u   g  uc        c g     c     -----    a 
 ccug guu gg  gguccuuc c gggca cuugc     ugau g
 |||| ||| ||  |||||||| | ||||| |||||     |||| g
 ggac uaa cc  UCGGGAAG G CCCGU GAGcg     acug u
a    -   g  UU        U A     C     cacga    a 

>dpu-mir-252a (-38.00)   [dpu-miR-252a:21-42]

agaugau        cguucC    U   C U  C       a  ---    uu 
       uccuaccc      UAAG ACU G GC GCAGGAG ga   ugua  a
       ||||||||      |||| ||| | || ||||||| ||   ||||   
       aggguggg      auuc uga c cg cguccuc cu   acgu  a
------g        uaacca    u   a u  u       -  uga    cu 

>dpu-mir-252b (-29.69)   [dpu-miR-252b:21-42]

uaaauuu     u   gu  C        AG  C G        ugcuauu 
       gguua gag  cg UAAGUAGU  UG C CAGGUAau       a
       ||||| |||  || ||||||||  || | ||||||||        
       ucaau uuc  gc auucaucg  ac g guccauua       a
--aaauu     u   uu  a        ga  a -        uacucua 

>dpu-mir-263a (-24.34)   [dpu-miR-263a:20-40]

guuguuggccgauucccgcAAUGGCACUG     A         cgcaauuaa    ga    uuu 
                             GAAGA UUCACgggu         auuu  caga   g
                             ||||| |||||||||         ||||  ||||    
                             cuucu aggugcuca         uaaa  gucu   a
----------------------------a     -         ----cacag    ag    uua 

>dpu-mir-263b (-29.00)   [dpu-miR-263b:7-28]

 ug   C       UG AA        A  g --g a 
g  auc UUGGCAC  G  GAAUUCAC ga u   c u
|  ||| |||||||  |  |||||||| || |   | u
c  uag gaccgug  c  cuugggug cu g   g a
 gu   a       gu -c        -  g aca c 

>dpu-mir-275 (-53.70)   [dpu-miR-275:61-83]

---auauua   -        c        ga         cc    g   uaa 
         cug gccacucc cgugcugc  caggugcuu  ggcu ugu   u
         ||| |||||||| ||||||||  |||||||||  |||| |||    
         ggc cggugagG GCGCGAUG  GUCCAUGGA  CUga gcg   a
cucuagcaa   u        C        AA         --    -   uua 

>dpu-mir-276 (-38.80)   [dpu-miR-276:61-82]

----------gac      cu    a     ag         gucuu   -   ga 
             gugucg  agcg gguau  aguuccuac     guc acu  a
             ||||||  |||| |||||  |||||||||     ||| |||  u
             cgcagc  UCGU CCAUA  UCAAGGAUg     uag uga  u
cugauagccuaac      UC    G     CU         ---gu   c   ac 

>dpu-mir-278 (-24.50)   [dpu-miR-278:61-82]

aaaaaguuuucucuguuuucgaga           ug acaa  --aa   a 
                        gacggaagucu  c    ga    uuu a
                        |||||||||||  |    ||    |||  
                        CUGCUUUCAGG  G    CU    aaa a
cacaacaguucacguagugUGUGC           GU ---G  ggac   a 

>dpu-mir-279 (-17.30)   [dpu-miR-279:60-81]

----------------------------------       c   uuaacuu    ugg     g   uga 
                                  ucugguc aug       gauu   cgacc aac   a
                                  ||||||| |||       ||||   ||||| |||    
                                  AGAUCAG Uac       uuaa   guugg uug   a
gcuuaaugguugacacagugACCUACUCACACCU       -   ------u    -ua     -   uua 

>dpu-mir-281 (-31.82)   [dpu-miR-281:61-83]

agagcuuga -   c         -ua       a    -augcug  u 
         g ccg aaagagagc   uccguga cagu       ug g
         | ||| |||||||||   ||||||| ||||       ||  
         c ggU UUUCUCUCG   AGGUACU GUca       gc u
--------a a   A         UCG       -    cuuaaaa  g 

>dpu-mir-285 (-33.50)   [dpu-miR-285:62-83]

--acagagg   ug  -auc          uu  a   c    -- g       
         agc  gg    acugaauucu  ug ugc uaga  u uaguuu 
         |||  ||    ||||||||||  || ||| ||||  | ||||| g
         ucg  cc    UGACUUAAGG  AC ACG AUcu  a aucagu 
uuaacgcgg   gu  caUU          UU  C   -    ca g       

>dpu-mir-2a (-42.80)   [dpu-miR-2a:61-83]

----    --u    g       -     -       c     ucccaauuuc 
    cuac   acgu ccgcucg caaag uggcugu augug          a
    ||||   |||| ||||||| ||||| ||||||| |||||          a
    ggug   ugca ggCGAGU GUUUC ACCGACA UAUac          g
uucc    uuu    g       A     G       C     uuugcgauuu 

>dpu-mir-2b (-47.00)   [dpu-miR-2b:61-83]

   g  u    u     uua   ug      -          ----     uc 
caa gg gucg gugua   gcu  ucagag ugguugugau    gugcg  a
||| || |||| |||||   |||  |||||| ||||||||||    |||||   
guu uu cagc cgcau   CGA  AGUUUC ACCGACACUA    caugu  u
   g  -    u     -cg   GU      G          Ugcu     ug 

>dpu-mir-31 (-41.60)   [dpu-miR-31:21-43]

---gaau    -    ucg    aA    A     C          Acgu   aa 
       ggag gguu   cgcg  GGCA GAUGU GGCAUAGCUG    gcu  u
       |||| ||||   ||||  |||| ||||| ||||||||||    |||   
       ccuc ccaa   gugc  ccgu cuaca uugugucgau    uga  c
caguaac    g    ---    aa    g     -          ---g   gc 

>dpu-mir-315 (-21.30)   [dpu-miR-315:21-42]

uauauaauagcucccaauguUUUUGA     G   A       gugccauuucacauuuuugg 
                          UUGUU CUC GAAAGCc                    c
                          ||||| ||| |||||||                     
                          aauaa gag cuuucgg                    u
--------------------------     a   -       ucaacacuaaaaaacugcag 

>dpu-mir-317 (-47.50)   [dpu-miR-317:61-85]

aaau     ----   c     g    -      --   c         uu uug 
    uucca    cac gggac ggga accacc  cug guucgccug  g   g
    |||||    ||| ||||| |||| ||||||  ||| |||||||||  |    
    aaggu    gug uccUG CUCU UGGUGG  GAC CAAGUggac  u   a
----     uaua   u     A    A      UC   A         cu uua 

>dpu-mir-33 (-42.80)   [dpu-miR-33:21-42]

acacacu  -g    g    -uG        AGUU       A  uugu   u 
       gg  ggua cccg   UGCAUUGU    GCAUUGC Cg    caa u
       ||  |||| ||||   ||||||||    ||||||| ||    |||  
       cc  ccgu gggc   acgugacg    cguaacg gc    guu c
----ucg  aa    a    uca        gcuu       c  -uuu   u 

>dpu-mir-34 (-40.63)   [dpu-miR-34:22-45]

gggcaaaa    -         U      G   U   C        aaauauu 
        gugu auugauggu GGCAGU UGG UAG UGGUUGUG       u
        |||| ||||||||| |||||| ||| ||| ||||||||       a
        caca uagcuguca cuguca acc auc accgacac       c
------ag    g         c      a   u   -        cuaaguu 

>dpu-mir-375 (-20.90)   [dpu-miR-375:61-82]

-----------------------------------------------c g       -   ug -aaa  g  g 
                                                g gagugug ucg  a    aa uc c
                                                | ||||||| |||  |    || ||  
                                                c uuuacac ggc  u    uu ag c
gcgauaaacugacaguuugAUUGAGUUCGGCUUGCUUGUUUggcuuga g       u   gu guag  g  g 

>dpu-mir-307 (-19.20)   [dpu-miR-307:61-80]

------------------------------uuu       gu uaguuuucc     -  ua     aa 
                                 gguugug  g         aaaca aa  ugauc  u
                                 |||||||  |         ||||| ||  |||||   
                                 CCAACAC  c         uuugu uu  acugg  u
cuuaauagaaagcgaugaaguGAGUGAGUUCCU       Ug --------u     c  uc     cu 

>dpu-mir-7 (-31.90)   [dpu-miR-7:21-43]

ggccuccgg    ug     U  AA      U      G    --    cau 
         cugu  uggua GG  GACUAG GAUUUU UUGU  ucgg   a
         ||||  ||||| ||  |||||| |||||| ||||  ||||    
         gacg  accau cc  uugauc cuaaaa aaca  ggcc   a
---------    ga     -  ac      u      -    au    aga 

>dpu-mir-71 (-38.00)   [dpu-miR-71:22-44]

gcguugu     -   u    c    A    U           UGuu  ccu  u 
       gaaag gca cggc UGAA GACA GGGUAGUGAGA    gg   gg a
       ||||| ||| |||| |||| |||| |||||||||||    ||   || g
       uuuuc cgu gcug acuu cugu uucaucacucu    cc   cc u
-----cc     a   -    u    g    -           ----  acu  u 

>dpu-mir-79 (-34.60)   [dpu-miR-79:61-83]

ggucgucau  c  u c    uu       u        g     g    a 
         gg gc g uuuu  cuuuggu aucuagcu uauga uguu g
         || || | ||||  ||||||| |||||||| ||||| ||||  
         cc cg c agaA  GAAACCA UGGAUCGA AUAcu gcag a
--uacuucu  c  u a    UU       U        A     -    a 

>dpu-mir-8 (-26.90)   [dpu-miR-8:61-83]

--------au   uuuc      -   g     c      ------uug    uu 
          cgg    caucuu acc ggcag auuaga         gcuu  u
          |||    |||||| ||| ||||| ||||||         ||||  a
          gcc    GUAGAA UGG CUGUC UAAUcu         cgaa  a
aaguguucgu   ucCU      A   A     A      uuagugcua    ca 

>dpu-mir-9 (-34.60)   [dpu-miR-9:21-43]

--ucgucau  c  u c    uU       U        G     g    a 
         gg gc g uuuu  CUUUGGU AUCUAGCU UAUGA uguu g
         || || | ||||  ||||||| |||||||| ||||| ||||  
         cc cg c agaa  gaaacca uggaucga auacu gcag a
gcuacuucu  c  u a    uu       u        a     -    a 

>dpu-mir-92 (-23.52)   [dpu-miR-92:61-82]

accuuga     aacc   uga     uu   uu g    c    uuuaa 
       uaguc    uua   aggcu  gac  g gcaa uucg     a
       |||||    |||   |||||  |||  | |||| ||||     u
       aucag    aau   UCCGG  CUG  C CGUU AAgc     g
caaaaaa     -guc   uCG     CC   CU A    -    uguuu 

>dpu-mir-96 (-7.90)   [dpu-miR-96:21-42]

aaguaggaucaaauuuucaaUUUGGCACUGGCACAAUUU   caacu      u 
                                       UGC     uuaaaa a
                                       |||     |||||| u
                                       acg     aauuuu g
-----aaacaaauuguaaaaaauuucggguucccccucu   -----      u 

>dpu-mir-965 (-36.10)   [dpu-miR-965:55-76]

----     u   aa   a         ug  g u       --c  a 
    aagug gca  gca gggaaaggu  ua c cuuaugu   uc u
    ||||| |||  ||| |||||||||  || | |||||||   || u
    uucac ugu  cGU CCCUUUUCG  AU G GAAUacg   ag u
guag     -   ga   C         GU  - C       auu  u 

>dpu-mir-981 (-42.80)   [dpu-miR-981:61-82]

aauu   -      -u   c         -     cu      --cc  uua 
    gug ccgugc  ugu cggguuucg cgacg  cgaacg    gu   c
    ||| ||||||  ||| ||||||||| |||||  ||||||    ||    
    cac ggcacg  auA GUCCAAAGC GCUGU  GCUUgc    ca   u
-ucu   u      cu   C         A     -U      cuga  cuu 

>dpu-mir-993 (-35.40)   [dpu-miR-993:61-83]

---caaagcc    a   cc      c     cuc          u   guu 
          ugcc gua  gauacc uguag   cgggcuuuug uug   u
          |||| |||  |||||| |||||   |||||||||| |||    
          augg cau  CUAUGG ACAUC   GCUCGAAGac aau   c
aagaaagcaa    g   -U      -     UUU          u   aau 

>dpu-mir-iab-4 (-33.20)   [dpu-miR-iab-4-5p:20-41] [dpu-miR-iab-4-3p:55-78]

--    u  uuaa  c    -g            U    -  U   cuu 
  ugga gu    cc ccug  ACGUAUACUGAA GUAU CC GAg   c
  |||| ||    || ||||  |||||||||||| |||| || |||   a
  acuu ca    gg ggaC  UGCAUAUGACUU CAUA GG cuu   u
ca    u  caac  a    AA            C    U  C   acu 

>isc-bantam (-37.53)   [isc-bantam:61-83]

gcc    -aaacgcca       cu                guc     gga 
   gaag         gacaaaa  gguuuucacaaugauc   cagau   c
   ||||         |||||||  ||||||||||||||||   |||||   c
   cuuc         uuguuUU  UCGAAAGUGUUACUAG   GUcug   u
---    gagacuuag       AG                --A     aag 

>isc-let-7 (-38.70)   [isc-let-7:21-41]

gucucugugu u        U   G                  agaa  aca   g 
          g accugaag GAG UAGUAGGUUGUAUAGUug    cu   ucu c
          | |||||||| ||| ||||||||||||||||||    ||   ||| c
          c ugggcuuc uuc aucguucaacaugucaau    ga   agg a
---------g -        u   a                  ---c  --g   a 

>isc-mir-1 (-32.00)   [isc-miR-1:56-77]

-uc    ---    u a         c    uuc      g  uc c 
   cguu   cgga c ccgugcuuc uuac   ccauau ug  c c
   ||||   |||| | ||||||||| ||||   |||||| ||  | u
   gcag   gccu G GGUAUGAAG AAUG   GGUaug gc  g c
aca    gug    u A         A    UAA      -  ga a 

>isc-mir-10 (-26.60)   [isc-miR-10:8-29]

      cU -  -  G    U        ---    gc 
cuacau  A CC CU UAGA CCGAAUUU   GUcu  a
||||||  | || || |||| ||||||||   ||||   
ggugug  u gg ga aucu ggcuuaaa   caga  a
      uu c  a  g    u        cau    ac 

>isc-mir-100 (-51.50)   [isc-miR-100:21-43]

aagauc  --    -  c    uA         UCC          -cc  g 
      gg  agcg cc gccc  ACCCGUAGA   GAACUUGUGU   gc c
      ||  |||| || ||||  |||||||||   ||||||||||   || g
      cc  ucgc gg cggg  ugggcgucu   cuugaacacg   cg a
--cuua  gu    u  u    uc         ccc          aaa  u 

>isc-mir-12 (-52.00)   [isc-miR-12:21-43]

---gaucgc        u   ac           U           -  g u 
         guuggggc ggg  UGAGUAUUACA CAGGUACUGGU cu g u
         |||||||| |||  ||||||||||| ||||||||||| || |  
         cggccccg ucc  acuuauagugu gucuaugacca gg u g
gcgucaaau        c   cc           -           u  g c 

>isc-mir-124 (-43.80)   [isc-miR-124:61-83]

--gaccccuu     aacg    cc            c      au    cc 
          gcgug    cucu  guauucacugcg gccuug  gugc  a
          |||||    ||||  |||||||||||| ||||||  ||||   
          cgcac    gaGA  CGUAAGUGGCGC CGGAAU  uaug  a
acuaaucguu     ---g    AC            A      ac    ca 

>isc-mir-133 (-38.40)   [isc-miR-133:61-82]

-------------------u       c     cc         c  --caua      au 
                    uagcugg ugaag  gggccaaau gu      auuccu  g
                    ||||||| |||||  ||||||||| ||      ||||||   
                    GUCGACC ACUUC  CCUGGUUua ca      uaagga  a
aacaacucgauacgguuggU       A     -C         -  uaacuc      aa 

>isc-mir-137 (-32.50)   [isc-miR-137:61-82]

----ug   gau    uc    - c         aauu  g       cu   a 
      gug   ucug  cugg g cguguauuc    gc aauaaca  cuu c
      |||   ||||  |||| | |||||||||    || |||||||  ||| c
      cgc   agac  ggcc C GCACAUAAG    CG UUAUugu  gaa u
uucuua   ---    ca    G U         AGUU  -       -c   a 

>isc-mir-153 (-53.10)   [isc-miR-153:61-82]

cuu   cucu          cu                 g       g   a 
   ggc    cuccguugcg  caucauuuuugugauug ugcaauu ugc c
   |||    ||||||||||  ||||||||||||||||| ||||||| |||  
   ucg    ggggcggcgc  GUAGUGAAAACACUGAU ACGUUaa acg c
-uc   --uc          ug                 -       -   a 

>isc-mir-184 (-39.00)   [isc-miR-184:61-82]

cggccuucc  uu     uu         -   ga        -a  g ug 
         gu  ccacg  uccuuauca uuc  cuguccag  cu c  u
         ||  |||||  ||||||||| |||  ||||||||  || |   
         cg  ggugu  GGGAAUAGU AAG  GGCAGGUc  ga g  u
aacucauua  uu     uC         C   -A        ca  g uu 

>isc-mir-219 (-48.70)   [isc-miR-219:21-42]

----a  g  c            g    U    AA     A      --u  g 
     cg aa caguuccaagcu UGAU GUCC  ACGCA UUCUUg   gc a
     || || |||||||||||| |||| ||||  ||||| ||||||   ||  
     gc uu gucaagguuugg acua cagg  ugugu aagaac   ug u
acaca  g  a            g    -    gc     c      cau  c 

>isc-mir-252b (-32.10)   [isc-miR-252b:20-41]

caug         ------------    cuUUA      A   CC       -a  -    
    uguguuuua            aguc     AGUAGU GUG  GCAGGUA  gg gcu 
    |||||||||            ||||     |||||| |||  |||||||  || || u
    acgcaaagu            ucag     ucguca cac  cguccau  uc cgg 
--ca         caccuaaaguag    -----      a   -a       gg  a    

>isc-mir-263a (-45.10)   [isc-miR-263a:21-41]

uugccuu    c  u     A           A   U      --gg   u 
       ccua cu ccguc AUGGCACUGGA GAA UCACgg    ucu g
       |||| || ||||| ||||||||||| ||| ||||||    |||  
       ggau gg gguag ugucguggccu cuu agugcc    aga a
-ucagcc    c  c     g           -   c      auaa   u 

>isc-mir-275 (-51.00)   [isc-miR-275:61-83]

gucuuu  --     uu    - ua        a         ug     acg g 
      cc  ucccg  gccu c  cgugcugc ucaggugcu  ugacu   c u
      ||  |||||  |||| |  |||||||| |||||||||  |||||   |  
      gg  ggggc  cgga g  GCGCGAUG AGUCCAUGG  ACUga   g u
-----u  uc     uu    a GC        A         --     -aa c 

>isc-mir-279 (-30.70)   [isc-miR-279:52-73]

------ccua     g    u     c    cc       c   u aa 
          ucguu cuau gauga ugug  ucuaguc aug g  u
          ||||| |||| ||||| ||||  ||||||| ||| |  c
          ggcga gauA CUACU ACAC  AGAUCAG Uac c  u
gcuguuucaa     a    C     C    CU       -   u ga 

>isc-mir-285 (-30.90)   [isc-miR-285:61-82]

auccaaaucca  c      -c          uu     --  u    g  u 
           uc uugggu  acugaguucg  uggug  gg agaa ug g
           || ||||||  ||||||||||  |||||  || |||| ||  
           ag aaccua  UGACUUAAGU  ACCAC  Uc ucuu ac u
------gcuug  a      CU          UU     GA  -    a  c 

>isc-mir-2a (-46.92)   [isc-miR-2a:61-83]

uuuc    ac u c    u             -     c       ugucu 
    guag  g c cacc cuguucgucaaag uggcu ugaugug     c
    ||||  | | |||| ||||||||||||| ||||| |||||||     u
    cauc  c g gugg ggCGAGUAGUUUC ACCGA ACUAUac     u
---u    cu u a    u             G     C       uuuuu 

>isc-mir-2b (-43.10)   [isc-miR-2b:61-83]

cuaau   ---   c        -         - a      a    cuc  u 
     guu   uuc ugugcagc cgucaaagg g cuguga augu   cc u
     |||   ||| |||||||| ||||||||| | |||||| ||||   || c
     cag   aag acauguCG GUAGUUUCC C GACACU Uacg   gg u
---cu   gcu   c        A         A C      A    acu  u 

>isc-mir-315 (-36.80)   [isc-miR-315:21-42]

--------cu   gua    uucu   cU      U  UG   A      g  gca 
          gcg   cucc    cag  UUUGAU GU  CUC GAAGGC ug   a
          |||   ||||    |||  |||||| ||  ||| |||||| ||   u
          cgc   gagg    guu  aaacua ca  gag cuuccg ac   c
acugcuuaac   --a    ---u   cu      u  gu   -      a  agu 

>isc-mir-317 (-42.50)   [isc-miR-317:61-85]

uucgacaug   u  c     -a          --   a    c   -gu  g 
         gcc cg cugac  guguaccacc  cug guuc cac   gc u
         ||| || |||||  ||||||||||  ||| |||| |||   ||  
         cgg gc gacUG  UAUAUGGUGG  GAC CAAG gug   cg u
---caucua   c  u     AC          UC   A    U   acc  u 

>isc-mir-375 (-41.96)   [isc-miR-375:61-82]

cacaaaa   -    a  -g             cc  u       uggaac 
       cca gccg gu  cugacucgagcug  cg gcaaaac      c
       ||| |||| ||  |||||||||||||  || |||||||      a
       ggu uggc ca  gAUUGAGCUCGGC  GC UGUUUug      c
-aacaca   g    -  aa             UU  U       uugcgu 

>isc-mir-307 (-49.10)   [isc-miR-307:61-80]

  u  ag    -a      uc         uuu  c       uaa   g 
gc ug  ucgg  gggccu  cucacucag   gg uguggug   cgg c
|| ||  ||||  ||||||  |||||||||   || |||||||   |||  
cg ac  agcc  uccgga  GAGUGAGUU   CC ACACUac   gcu g
  c  cg    gc      gu         CCU  A       cca   c 

>isc-mir-7 (-25.30)   [isc-miR-7:15-37]

ggggcccuc    c    A  C          GUUG     uc 
         ccgu UGGA GA UAGUGAUUUU    Uucug  a
         |||| |||| || ||||||||||    |||||  a
         ggca gccu cu aucacuaaag    aaggu  a
-------gu    a    -  -          aaca     uc 

>isc-mir-71 (-47.30)   [isc-miR-71:22-44]

gagu     -      a    cUG       U             a  -u  a 
    uugca guguug uucc   AAAGACA GGGUAGUGAGAUG gu  ug c
    ||||| |||||| ||||   ||||||| ||||||||||||| ||  ||  
    gacgu cacgau aagg   uuucugu uccaucacucuac cg  ac u
---u     g      a    uug       -             -  uu  g 

>isc-mir-750 (-41.50)   [isc-miR-750:61-83]

gguug    --u  -   uc          ---------   g   -      - uu 
     gccg   cc cac  gaguuggaag         ugg auc cugaca c  g
     ||||   || |||  ||||||||||         ||| ||| |||||| |   
     uggc   gg gug  CUCGACCUUC         ACC ugg ggcugu g  a
-uuua    cau  a   gA          UCAAUCUAG   g   u      c cg 

>isc-mir-79 (-35.40)   [isc-miR-79:61-83]

agaggaugaa   ---    a  uuuu       u        g     -  ga 
          ggc   gcug ua    cuuuggu aucuagcu uauga gu  u
          |||   |||| ||    ||||||| |||||||| ||||| ||  a
          ccg   cgac AU    GAAACCA UGGAUCGA AUAcu ca  u
---cguaaug   uca    a  ---U       U        A     a  au 

>isc-mir-8 (-36.90)   [isc-miR-8:58-80]

-     accgagca     ca       -   a     c      uugag 
 cagcg        cccgu  acaucuu acc gacag auuaga     c
 |||||        |||||  ||||||| ||| ||||| ||||||      
 gucgc        gggcg  UGUAGAA UGG CUGUC UAAUcu     c
u     ------aa     cC       A   A     A      uuagu 

>isc-mir-87 (-31.00)   [isc-miR-87:61-81]

cacacauc  g    uu   u  c         a    u   aa    uuca 
        uc cuuc  gac gc ugccugaaa uuug cuc  accu    u
        || ||||  ||| || ||||||||| |||| |||  ||||     
        ag gagg  cug uG GUGGACUUU AAAC GAG  UGga    a
-gucacac  -    uu   u  U         G    -   --    ugug 

>isc-mir-96 (-32.30)   [isc-miR-96:21-42]

----- u  a    gcc    -   u          G    -       -  uuc 
     g ca acuc   uucc guu UUUGGCACUA CACA UUUUUGU gu   g
     | || ||||   |||| ||| |||||||||| |||| ||||||| ||   a
     c gu ugag   aagg uaa gaacugugau gugu aaaaaca ca   u
cguaa -  c    ---    a   c          g    u       g  ucg 

>isc-mir-993 (-34.80)   [isc-miR-993:61-83]

cacgagccc       uc    c       c          -u  acua 
         uucguaa  uacc uguagaa cgggcuuuug  ag    g
         |||||||  |||| ||||||| ||||||||||  ||     
         aagcguU  AUGG ACAUCUU GCUCGAAGac  uc    c
------cua       CU    -       U          uu  ccag 

>bmo-mir-100 (-33.70)   [bmo-miR-100:21-42]

cauuaagccucuuuaa    -   CCG    UC   AC    Gc       --uc    gggacuccguccaa 
                cugg AAC   UAGA  CGA  UUGU  gcuauug    guug              u
                |||| |||   ||||  |||  ||||  |||||||    ||||               
                ggcc uug   aucu  gcu  aaca  cgguaac    cagc              c
--aaaccaaaacuaac    g   aaa    ua   au    -a       uuau    gauagcaaugcgcg 

>bmo-mir-316 (-25.40)   [bmo-miR-316*:11-33] [bmo-miR-316:51-72]

--ug      uuU U       C         C    uuuu 
    cauaaa   G CUUUUUC GCUUUGCUG UGau    u
    ||||||   | ||||||| ||||||||| ||||    u
    guauuu   C GGAAAAG UGAAACGGC acug    c
aaga      CCU U       -         A    caug 

>bmo-mir-33 (-24.90)   [bmo-miR-33:11-31] [bmo-miR-33*:49-70]

--   ag  a  -G   A        GC       cg   c 
  uaa  cg ga  UGC UUGUAGUU  AUUGCAc  guu c
  |||  || ||  ||| ||||||||  |||||||  ||| a
  auu  gc CU  ACG AACAUCAG  UAACgug  caa u
ug   aa  c  AA   G        UA       --   u 

>bmo-mir-11 (-33.40)   [bmo-miR-11*:11-32] [bmo-miR-11:45-66]

---  uu         C    -   A     CC    uuc 
   gu  uguggcUAG ACUC GAC UGUGA  UGUg   g
   ||  ||||||||| |||| ||| |||||  ||||   g
   cg  acaUCGAUC UGAG CUG ACACU  ACac   u
gcg  gc         U    A   -     --    uaa 

>bmo-mir-998 (-45.50)   [bmo-miR-998:44-63]

cu      c      cc       cg      -  g 
  cggucg gagcug  ucccgug  gcugca gu c
  |||||| ||||||  |||||||  |||||| ||  
  gccggc cUCGAC  AGGGUAC  CGAUgu cg u
uc      a      UU       CA      g  c 

>bmo-mir-308 (-31.50)   [bmo-miR-308*:11-33] [bmo-miR-308:45-66]

--   uu    g  UG       U       A   -  u 
  cgu  ccac CG  GUAUUAU CUUGUGA UGU gu u
  |||  |||| ||  ||||||| ||||||| ||| ||  
  gug  gguG GC  CAUAAUA GGACACU Aca cg u
cu   gc    A  GU       -       A   u  a 

>bmo-mir-279d (-30.30)   [bmo-miR-279d*:11-32] [bmo-miR-279d:45-66]

--u   u    c         CC       U    uug 
   ucc caga GAUGAGUGA  GUUUAGU CAAg   u
   ||| |||| |||||||||  ||||||| ||||   c
   ggg gucU CUAUUCACU  UAGAUCA GUuc   a
cac   c    C         UU       -    uua 

>bmo-mir-279b (-29.30)   [bmo-miR-279b*:11-29] [bmo-miR-279b:46-67]

---uuu   g         A         UA    c   c 
      gua uuaAUGGGU UAGGUCUAG  Ucac ggg u
      ||| ||||||||| |||||||||  |||| |||  
      cgu AGUUACUCA AUCUAGAUC  AGUg cuu g
gguauu   g         C         --    u   a 

>bmo-mir-279c (-32.80)   [bmo-miR-279c*:11-32] [bmo-miR-279c:49-70]

-    au   uG       U  CU      U    u  ua 
 ugau  uug  GGCGAGU UG  UCUGGU CAug uu  u
 ||||  |||  ||||||| ||  |||||| |||| ||   
 acua  gac  CUGCUCA AC  AGAUCA GUac ag  a
a    cc   GU       U  CU      -    u  uu 

>bmo-mir-1175 (-26.90)   [bmo-miR-1175-5p:11-32] [bmo-miR-1175-3p:49-72]

-guga   -a      -     -UG   UC   U      uua 
     cag  uuAAGU GGAGG   UGA  UCU CAcuuu   u
     |||  |||||| |||||   |||  ||| ||||||    
     guc  AAUUCA CCUCC   ACU  AGA GUgaaa   g
gcuag   cc      A     UCA   -U   -      uuu 

>bmo-mir-2754 (-28.63)   [bmo-miR-2754:68-87]

u   uu     a      uacg         ---ucaaaag    uu uu 
 ggg  uggac uguugc    caaugccgg          cgcg  g  a
 |||  ||||| ||||||    |||||||||          ||||  |   
 ccu  auuuG AUAAUG    GUUAUGGUC          gcgu  c  a
a   cu     -      -UCA         Ucacucuaca    gu ua 

>bmo-mir-2755 (-26.00)   [bmo-miR-2755*:11-32] [bmo-miR-2755:47-69]

-u     -        -    C  AG   A    Uuu aa 
  uuggu gaagCAAG GUGG CU  CAG GUGU   c  c
  ||||| |||||||| |||| ||  ||| ||||   |   
  aauca uuUUGUUC UACC GA  GUC CACg   g  a
cc     a        A    A  CU   C    uuc aa 

>bmo-mir-2733e-2 (-28.50)   [bmo-miR-2733e:68-89]

uuugcuggacugucuauaaugucuuucaac            -   u    aa    uuc 
                              aauagcuauuac uuc ccag  gaca   a
                              |||||||||||| ||| ||||  ||||   c
                              uUAUCGAUAAUG AAG GGUC  CUgu   a
---------------------uuaaaaccu            U   -    -A    cuu 

>bmo-mir-2733e-1 (-27.30)   [bmo-miR-2733e:67-88]

acugucuacaacaaugucucucaac         c  -    u    c    ---   u 
                         aauaguuau ac uucc cagu gaca   ugu u
                         ||||||||| || |||| |||| ||||   |||  
                         uUAUCGAUA UG AAGG GUCA CUgu   aca u
----------------agauagguc         A  U    -    -    cuu   c 

>bmo-mir-2733d (-33.00)   [bmo-miR-2733d:51-72]

c        au      a      u a    u    ---  u 
 ucucugua  gcaguc ucauac c cagu gaua   ug u
 ||||||||  |||||| |||||| | |||| ||||   || u
 agagacau  UGUUAG AGUAUG G GUCA CUau   ac g
-        gg      A      U G    -    cuu  a 

>bmo-mir-2733c (-43.00)   [bmo-miR-2733c:51-72]

g          u    ug     a  g      u   uguc 
 auugucacug cagu  ucacu uc ccagug cag    g
 |||||||||| ||||  ||||| || |||||| |||     
 uagcaguggc GUUA  AGUGA AG GGUCAC guc    u
-          C    GU     G  -      U   uuaa 

>bmo-mir-9d (-29.50)   [bmo-miR-9d:54-75]

g       g       ug    uuc    ga     -ug   a 
 cucaauu gaguauu  guga   agcu  uguga   aaa c
 ||||||| |||||||  ||||   ||||  |||||   |||  
 gaguuga cuUGUGA  CACU   UCGA  AUAcu   uuu u
-       g       GU    UAA    -A     uaa   u 

>bmo-mir-2807c (-38.30)   [bmo-miR-2807c:11-34] [bmo-miR-2807c*:47-67]

-    c      A           CA            u 
 uaac agacgU CGACGAUGCGA  AAUAUGACAugu u
 |||| |||||| |||||||||||  ||||||||||||  
 guug uuuGCA GUUGUUACGCU  UUAUACUgugca a
u    u      -           --            c 

>bmo-mir-2756 (-40.40)   [bmo-miR-2756:11-32] [bmo-miR-2756*:46-67]

--     u   c  CC      U   A       cagc 
  ucagu gca AC  UGUAGC GCC AGGGGCG    u
  ||||| ||| ||  |||||| ||| |||||||    u
  aguca cgU UG  ACAUCG CGG UCCCCgc    a
ua     u   A  UU      U   C       cuua 

>bmo-mir-745 (-33.90)   [bmo-miR-745*:11-34] [bmo-miR-745:47-69]

--      g   CG    A    GU       U  Uagg 
  uaguug uug  GCUC UCGU  GGCAGUU GC    u
  |||||| |||  |||| ||||  ||||||| ||    u
  gucaac aGC  CGGG AGCG  CCGUCGA cg    a
ga      a   AA    A    AU       C  uaag 

>bmo-mir-2757 (-30.10)   [bmo-miR-2757:11-32] [bmo-miR-2757*:48-68]

-aau   ug            U     A  A   uuuu 
    uau  aaACGGGAAUGG CACUU CA CUg    u
    |||  |||||||||||| ||||| || |||    u
    aua  uUUGCCUUUACC GUGAA GU gau    c
uauc   gu            U     A  C   cuuu 

>bmo-mir-2758 (-37.00)   [bmo-miR-2758:11-32] [bmo-miR-2758*:45-66]

--  uu    a                   UA  cagg 
  ag  uaga gACUUGGUAGAACACGUAG  AG    u
  ||  |||| |||||||||||||||||||  ||     
  uu  aucu UUGAACCAUCUUGUGCGUC  uc    g
gg  gg    A                   CC  uaag 

>bmo-mir-2759 (-20.60)   [bmo-miR-2759:46-67]

uu   u   ucuc        uua   ac      - u 
  caa gac    cguguucu   auc  ucaaga c u
  ||| |||    ||||||||   |||  |||||| |  
  guu cug    GCGUAAGA   UAG  AGUucu g a
au   c   uAAA        UAC   AA      u u 

>bmo-mir-2760 (-28.20)   [bmo-miR-2760*:11-34] [bmo-miR-2760:60-81]

--c         C AG       UG           --------     c 
   cgaaugaaa G  GCUUAAU  AACCAAAAAGC        gcauc a
   ||||||||| |  |||||||  |||||||||||        ||||| c
   guuuauuUU C  UGAAUUG  UUGGUUUUUug        uguag u
gau         A CU       --           acaaaauu     u 

>bmo-mir-2761 (-39.20)   [bmo-miR-2761*:11-30] [bmo-miR-2761:45-67]

--auagacgcug      -                -     
            CAUCGA GACGGUUCCAUACAag cugc 
            |||||| |||||||||||||||| ||| a
            GUAGCU CUGCCAAGGUGUGUuc gacc 
uuaauaaaaaAG      G                a     

>bmo-mir-2762 (-39.70)   [bmo-miR-2762:52-73]

uuuac           c        uu          ga  g 
     uauuuuaccgu acauuucu  auguaucacg  ug a
     ||||||||||| ||||||||  ||||||||||  ||  
     auaaaAUGGCA UGUAAAGG  UGCAUGgugc  ac g
uuagu           -        GC          --  a 

>bmo-mir-2763 (-22.24)   [bmo-miR-2763*:11-34] [bmo-miR-2763:54-75]

--g        c G     U     A      ----------UU   g 
   gcaaugua U CAAAG AGUGA CAUAAU            AUc u
   |||||||| | ||||| ||||| ||||||            |||  
   uguuguaU A GUUUC UUACU GUAUUA            uag g
gca        - G     U     C      Uagauuauuauu   a 

>bmo-mir-2764 (-35.30)   [bmo-miR-2764:49-71]

caguuc                          cgu    u 
      uucuuuaguagcuacaauaucuauga   ugau c
      ||||||||||||||||||||||||||   ||||  
      aagaGGUCAUUGAUGUUAUAGAUGCU   auua g
ucuauu                          -Uu    a 

>bmo-mir-2765 (-36.20)   [bmo-miR-2765:11-32]

ua      ccU  U     -C   A         uua 
  ucuggg   GG AACUC  ACC CCGUUGGCg   u
  ||||||   || |||||  ||| |||||||||   c
  agaucc   cc uugag  ugg ggcaaccgc   a
gc      uuu  c     aa   -         cua 

>bmo-mir-2766 (-34.30)   [bmo-miR-2766*:11-32] [bmo-miR-2766:45-63]

cauu    gu     C    U UU     GC  ugu 
    acuc  CCGCC UUCG C  GACUG  Gc   c
    ||||  ||||| |||| |  |||||  ||    
    ugag  gGUGG AAGC G  CUGAC  cg   g
-cuu    ug     U    U UU     Ua  uuc 

>bmo-mir-2767 (-34.80)   [bmo-miR-2767:11-32]

-  c  ug   C                     ucu 
 ac gu  uuu AAGUAAAUCUCGUGCGGUUUG   c
 || ||  ||| |||||||||||||||||||||    
 ug ua  aaa uucauuuagaguaugccaagc   a
g  u  gu   a                     cuu 

>bmo-mir-750 (-33.10)   [bmo-miR-750*:12-33] [bmo-miR-750:50-69]

c       c         C   -      U A    uuca 
 uucaugu ugAGUUGGA AGG GGAUCU G CAgu    u
 ||||||| ||||||||| ||| |||||| | ||||     
 aggugcg acUCGACCU UCU UCUAGA C gucg    g
-       c         U   A      C -    cuug 

>bmo-mir-2768 (-40.54)   [bmo-miR-2768*:11-32] [bmo-miR-2768:66-87]

-         c     A                 uauauauc    uga 
 gucgggcga CGGUG AAUAUUUUGACCAAUUu        gguc   u
 ||||||||| ||||| |||||||||||||||||        ||||    
 uagcucguu GCUAC UUAUAGAAUUGGUUAag        ucag   c
c         U     G                 --uggaac    uug 

>bmo-mir-375 (-40.10)   [bmo-miR-375:11-32] [bmo-miR-375*:47-69]

--ca  aa      C     -  UC           u  c 
    gc  ggcgAC CGAGC GG  UGAGCAAACUg ga a
    ||  |||||| ||||| ||  ||||||||||| || a
    cg  ccGCUG GCUCG CC  GCUUGUUUgau cu u
acug  aa      U     G  CC           -  a 

>bmo-mir-2769 (-31.70)   [bmo-miR-2769:47-68]

u    u  a        c             c   aug 
 aaau ac cgaccgaa aucugauaauaua uau   a
 |||| || |||||||| ||||||||||||| |||    
 uuua ug gCUGGCUU UAGACUAUUAUAU aua   u
u    u  c        U             A   gua 

>bmo-mir-2770 (-24.90)   [bmo-miR-2770:11-34] [bmo-miR-2770*:40-59]

uca    u   A     AAUU  U   U         
   gucu ccU GAUAG    CG CGG GGAUAAcc 
   |||| ||| |||||    || ||| ||||||| u
   cggg ggG UUGUC    GU GCC CCUAUUgg 
gca    u   A     --AU  -   -         

>bmo-mir-2772b (-21.80)   [bmo-miR-2772b:66-86]

uucuu   -   -auc    -        -gu   ----     ca   ugg 
     ugc cuu    ucua aacucaaa   ggu    accag  gug   a
     ||| |||    |||| ||||||||   |||    |||||  |||    
     aug gAG    AGGU UUGAGUUU   ccg    ugguc  uac   u
ggugu   c   GUCU    C        GUg   uugc     --   ugg 

>bmo-mir-2771 (-24.40)   [bmo-miR-2771*:11-36] [bmo-miR-2771:67-88]

u     cuuuUA      C A -GA  G  -U  --G        guc   ac 
 cccaa      ACAUUA G G   UG GU  UA   UUAgggga   cca  u
 |||||      |||||| | |   || ||  ||   ||||||||   |||   
 ggguu      UGUAAU C C   AC UA  AU   aguccccu   ggu  g
-     -accca      - A AAG  G  UU  Aga        ---   ga 

>bmo-mir-2772a-1 (-24.10)   [bmo-miR-2772a:66-86]

uucuu   -   -auc    -        -gu   ----     ca   ugg 
     ugc cuu    ucca aacucaaa   ggu    accag  gug   a
     ||| |||    |||| ||||||||   |||    |||||  |||    
     aug gAG    AGGU UUGAGUUU   ccg    ugguc  uac   u
ggugu   c   GUCC    C        GUg   uugc     --   ugg 

>bmo-mir-2774a-1 (-31.40)   [bmo-miR-2774a:43-62]

aa  c   -      u  ccgg          aaua 
  ga gau aaggga cg    ucuaccgagc    u
  || ||| |||||| ||    ||||||||||     
  cu cua uUCCCU GC    AGGUGGCUCg    c
ca  u   a      -  UAGA          ccca 

>bmo-mir-2774a-3 (-26.50)   [bmo-miR-2774a:44-63]

aaaaaaacauuc    c   gg          aaua 
            ggac auc  ucuaccgagc    u
            |||| |||  ||||||||||     
            CCUG UAG  AGGUGGCUCg    c
aauugcugccUC    C   -A          ccca 

>bmo-mir-2775a (-61.70)   [bmo-miR-2775a:11-32]

cau                  A            c    a 
   ugugcacCGCGGGAGAAA GUAGGACAUUuc uccc c
   |||||||||||||||||| |||||||||||| ||||  
   acacguggcgcccuuuuu cauccuguagag aggg g
cau                  -            u    c 

>bmo-mir-2776 (-18.50)   [bmo-miR-2776:11-31]

cuccuauuagA    AC        A      -  uu 
           GAGU  GCAAAAAA CAAUUu gg  u
           ||||  |||||||| |||||| ||   
           cucg  cguuuuuu guuaaa cc  u
aucuacuauua    aa        c      g  ca 

>bmo-mir-2774b-1 (-25.60)   [bmo-miR-2774b:46-67]

gaaca  a   ccc   cc   gg          aaua 
     ac aca   gga  guc  ucuaccgagc    u
     || |||   |||  |||  ||||||||||     
     ug ugU   CCU  UAG  AGAUGGCUCg    c
auaua  c   UUC   UC   -A          ccca 

>bmo-mir-2777 (-38.90)   [bmo-miR-2777:11-30] [bmo-miR-2777*:45-66]

cgaaa   -     G     G    G  UA     gug 
     ccc cuAGG ACCUU CCUG GU  Ucucg   u
     ||| ||||| ||||| |||| ||  |||||    
     ggg GAUUC UGGAG GGAC CG  AGAgc   c
cgcag   u     G     G    G  --     agg 

>bmo-mir-2774a-4 (-31.60)   [bmo-miR-2774a:44-63]

aca  a   uuc    c   gg           aua 
   ac aca   ggac guc  ucuaccgagca   u
   || |||   |||| |||  |||||||||||    
   ug ugu   CCUG UAG  AGGUGGCUCgu   u
aua  c   uUC    C   -A           cca 

>bmo-mir-2778a-1 (-25.40)   [bmo-miR-2778a*:11-30] [bmo-miR-2778a:46-67]

--    g     --          A  UC    Ac  uuu 
  cacg caaaa  GUUUUUUUGC UA  CUGC  ag   c
  |||| |||||  |||||||||| ||  ||||  ||    
  gugc guuUU  CAAAAAAACG AU  GACg  uc   a
ga    a     AA          C  GA    -c  uug 

>bmo-mir-2778c (-23.00)   [bmo-miR-2778c:11-30] [bmo-miR-2778c*:46-67]

--    g     --GU        A  UC    Ac  uuu 
  cacg caaaa    UUUUUUGC UA  CUGC  ag   c
  |||| |||||    |||||||| ||  ||||  ||    
  gugc guuUU    AAAAAACG AU  GACg  uc   a
ga    a     AACU        C  GA    -c  uug 

>bmo-mir-2778a-3 (-19.80)   [bmo-miR-2778a*:11-30] [bmo-miR-2778a:46-67]

-----c  gg   aa          A  UC    Ac  uuu 
      ac  caa  GUUUUUUUGC UA  CUGC  ag   c
      ||  |||  |||||||||| ||  ||||  ||    
      ug  gUU  CAAAAAAACG AU  GACg  uc   a
cauuua  -a   AA          C  GA    -c  uug 

>bmo-mir-2774b-2 (-21.80)   [bmo-miR-2774b:46-67]

gagca  a   uuc   cc   gg    g     aauu 
     ac aca   gga  guc  ucua cgagc    a
     || |||   |||  |||  |||| |||||     
     ug ugU   CCU  UAG  AGAU GCUCg    c
ccaaa  c   UUC   UC   -A    G     ccca 

>bmo-mir-2779 (-20.20)   [bmo-miR-2779:11-30]

uugcugguu    -    -      AGG      ugu 
         uAUA UCCG GCUCGA   ACCAua   u
         |||| |||| ||||||   ||||||    
         augu aggu cgaguu   uggugu   g
uuauuguuu    c    g      -aa      ugc 

>bmo-mir-2780a-1 (-19.42)   [bmo-miR-2780a:11-33] [bmo-miR-2780a*:66-87]

-   cggu  aAA      -       AGA   AUuaggg      g 
 cca    ga   GGGUGU UAAAUGA   CUU       cuucgg c
 |||    ||   |||||| |||||||   |||       |||||| a
 ggu    CU   CUCGUA GUUUGCU   gga       gaagcu u
a   -AAU  --G      A       AAa   -caaaaa      a 

>bmo-mir-2808c (-22.60)   [bmo-miR-2808c:49-70]

cac     ---uuc   ac      -    g  u      c 
   agagu      ucg  ggaucu ucgc gg uugggu g
   |||||      |||  |||||| |||| || ||||||  
   ucucg      AGC  CUUAGA GGUG Uc agcuua c
uuu     uaACAA   GA      U    G  u      u 

>bmo-mir-2774a-2 (-27.90)   [bmo-miR-2774a:44-63]

acaaca   uuc    c   gg          aaua 
      aca   ggac guc  ucuaccgagc    u
      |||   |||| |||  ||||||||||     
      ugu   CCUG UAG  AGGUGGCUCg    c
uauuac   uUC    C   -A          ccca 

>bmo-mir-2781 (-19.10)   [bmo-miR-2781:11-33]

a   -    -----    -  A A   U  AU   AG      a 
 ugg cuga     uuUA CC G UGU AG  UGA  GAGguc g
 ||| ||||     |||| || | ||| ||  |||  ||||||  
 acc ggcu     agau gg c aca uc  acu  uuccag u
a   u    uuauu    u  g c   u  --   --      c 

>bmo-mir-2778d (-23.00)   [bmo-miR-2778d:11-30] [bmo-miR-2778d*:46-66]

--    g     -GU        A  UC    Ac  uuu 
  cacg caaaa   UUUUUUGC UA  CUGC  ag   c
  |||| |||||   |||||||| ||  ||||  ||    
  gugc guuUU   AAAAAACG AU  GACg  uc   a
ga    a     AAC        C  GA    -c  uug 

>bmo-mir-2772a-2 (-22.40)   [bmo-miR-2772a:66-86]

uucuu   -   -auc    -        -gu    - c g   -  ugg 
     ugc cuu    ucca aacucaaa   ggua c a cag ug   a
     ||| |||    |||| ||||||||   |||| | | ||| ||    
     aug gAG    AGGU UUGAGUUU   ccgu g u guc gc   u
ggugu   c   GUCC    C        GUg    u c g   u  ugg 

>bmo-mir-2778b (-25.40)   [bmo-miR-2778b*:11-30] [bmo-miR-2778b:46-67]

--    g     --          A  UC    Ac  uuu 
  cacg caaaa  GUUUUUUUGC UA  CUGC  ag   c
  |||| |||||  |||||||||| ||  ||||  ||    
  gugc guuUU  CAAAAAAACG AU  GACg  uc   a
ga    a     AA          G  GA    -c  uug 

>bmo-mir-2778a-2 (-28.30)   [bmo-miR-2778a-2*:14-32] [bmo-miR-2778a:49-70]

a      g     --         UA  UC    ac  uuu 
 cucacg caaaa  GUUUUUUUG  UA  CUGC  ag   c
 |||||| |||||  |||||||||  ||  ||||  ||    
 gagugc guuUU  CAAAAAAAC  AU  GACg  uc   a
-      a     AA         GC  GA    -c  uug 

>bmo-mir-2778a-4 (-21.90)   [bmo-miR-2778a-4*:11-30] [bmo-miR-2778a:46-67]

--    g     --   A      A  UC    Ac  uuu 
  cacg caaaa  GUU UUUUGC UA  CUGC  ag   c
  |||| |||||  ||| |||||| ||  ||||  ||    
  gugc guuUU  CAA AAAACG AU  GACg  uc   a
ga    a     AA   A      C  GA    -c  uug 

>bmo-mir-2782 (-21.26)   [bmo-miR-2782:50-72]

auc    g    -     ug  ug    c      ucuaaa 
   uacg auug cguca  uu  uaua guaagu      u
   |||| |||| |||||  ||  |||| ||||||      u
   gugc uagC GCGGU  AA  AUGU CGUUCA      a
cgc    -    A     UA  GU    -      cuuaaa 

>bmo-mir-2783 (-35.80)   [bmo-miR-2783:11-33]

-  ug  g -a   G   AGG     G    G  G ---a  a       
 ga  ac u  aCG GCG   GUGUG GUGU GC c    gc agccgg 
 ||  || |  ||| |||   ||||| |||| || |    || ||||| a
 cu  ug a  ugc ugu   cgcgu cgcg cg g    cg ucggcg 
g  ug  g gg   g   --g     g    g  g cagg  g       

>bmo-mir-2784 (-36.20)   [bmo-miR-2784:11-32]

-  c cu   c  U   C    A           ggg 
 ag g  ucg AC CGG GGCG GUGUGUGUGUg   a
 || |  ||| || ||| |||| |||||||||||   g
 uc c  agc ug gcc ccgc cacacgcgcgc   g
a  u au   -  -   u    -           gac 

>bmo-mir-2785 (-41.20)   [bmo-miR-2785:48-68]

acc      c    g      a        a     ua 
   ggaugu uuag ccucgu ccgcacug auuaa  u
   |||||| |||| |||||| |||||||| |||||  a
   ccugca AAUC GGAGCA GGCGUGAC Uaauu  a
uac      a    -      A        G     uu 

>bmo-mir-2786 (-31.70)   [bmo-miR-2786:11-32]

u  u   u          C      AG  A   cag 
 ca uuc ucAGGUUAUG AGGCGA  GA UAu   c
 || ||| |||||||||| ||||||  || |||    
 gu aag gguccaguac uccgcu  cu aug   u
u  u   u          u      cu  c   cga 

>bmo-mir-2787 (-20.70)   [bmo-miR-2787*:11-35] [bmo-miR-2787:65-88]

-----aaa  -aaa      -UU      GA     -  UAAAu   u      
        ga    caUAUC   GAAUUU  UUAGC AC     gug ugaua 
        ||    ||||||   ||||||  ||||| ||     ||| |||| a
        cu    GUGUAG   CUUGAA  AGUcg ug     cac auuau 
uaaguaaa  GUAC      CAC      AG     c  -uaau   u      

>bmo-mir-2788 (-28.80)   [bmo-miR-2788:11-32]

-   -   gaac         A   C     G   cuuc 
 gcc gua    UGGGGUUUC AAG GGUAU UGc    g
 ||| |||    ||||||||| ||| ||||| |||     
 cgg cgu    acccuaaag uuc ccgua acg    a
g   u   gcaa         g   -     -   uauu 

>bmo-mir-2789 (-24.90)   [bmo-miR-2789:63-83]

c  -   uuauu  ug a    uu        uc    -uug    g 
 cg ugu     uc  u cucu  auuuucug  acag    uucu u
 || |||     ||  | ||||  ||||||||  ||||    |||| c
 gc aca     AG  G GAGG  UGAAAGAU  uguc    aagg g
-  g   ugcuU  GU -    UU        Gc    ugua    u 

>bmo-mir-2790 (-29.10)   [bmo-miR-2790*:11-32] [bmo-miR-2790:64-85]

--caa                A   A      AAaau       aau  u 
     uucuauuUGGAUAAAG ACA UUCUUA     auauaau   ag u
     |||||||||||||||| ||| ||||||     |||||||   ||  
     aagauAAACCUGUUUU UGU AAGAAU     uguguug   uc g
guuaa                A   C      -----       acu  a 

>bmo-mir-2791 (-20.50)   [bmo-miR-2791:11-32]

-   ga  uau          A CU    CA  cga 
 cuc  ug   UUUUCAUAAC G  CUGU  GC   c
 |||  ||   |||||||||| |  ||||  ||    
 gag  ac   aaaaguauug c  gaca  cg   g
u   ac  uau          c ug    ca  aaa 

>bmo-mir-2792 (-21.56)   [bmo-miR-2792-5p:11-32] [bmo-miR-2792-3p:50-71]

-uga    -cu    U      C       A   cuuuaa 
    acug   gUGG AUCGUU UUUAAUC ACA      u
    ||||   |||| |||||| ||||||| |||      u
    ugac   UACC UAGCGA AGAUUAG Ugu      u
cgug    auU    U      U       A   aauaag 

>bmo-mir-2794 (-33.00)   [bmo-miR-2794:64-83]

a g    c   acuc   gc   --    aa      u    uc  -   u 
 g ggca gcg    cgc  cga  aguc  uuguga gcgg  gg cuu u
 | |||| |||    |||  |||  ||||  |||||| ||||  || |||  
 c ccgu cgu    GCG  GCU  UCAG  GGCAcu ugcc  cc ggg u
g g    -   ---A   AU   UU    -C      -    --  a   a 

>bmo-mir-2795 (-18.30)   [bmo-miR-2795:11-33]

-   cc cacaC   UU  -     ACG     G  gu 
 cgu  c     AAG  UG GUGAU   CGGGC Ca  u
 |||  |     |||  || |||||   ||||| ||  u
 gca  g     uuc  gc cgcua   gcccg gu  u
u   uu cuucu   uc  u     -ca     -  ga 

>bmo-mir-2796 (-35.30)   [bmo-miR-2796-5p:11-31] [bmo-miR-2796-3p:47-69]

--uac    a     -       U       U   -   c 
     gguc gcAGG GGUUUCU UCGGCCU CAg aug g
     |||| ||||| ||||||| ||||||| ||| ||| u
     ucag CGUUC UCAAAGG GGCCGGA Guc uau c
ucauc    c     A       C       U   c   a 

>bmo-mir-2797a (-28.00)   [bmo-miR-2797a:11-32]

-u  u  g    U       U     U      u uuc 
  gu gu aucA AAGUAGG UUUAU CGACUU g   u
  || || |||| ||||||| ||||| |||||| |    
  cg ca uagu uucaucc aagug gcugaa u   a
ag  u  g    u       u     c      c uau 

>bmo-mir-2797b (-26.20)   [bmo-miR-2797b:11-32]

ua    a  cA          CUU  U     a  uuu 
  ucgu ag  UAAGUAGGUU   AU CGGCU ug   u
  |||| ||  ||||||||||   || ||||| ||   c
  agcg uc  auucauccga   ua gccga ac   a
ac    g  ag          -au  c     -  uua 

>bmo-mir-2797c (-20.70)   [bmo-miR-2797c:11-32]

-   g    a  U       U     U A     ugu 
 uau auua cA AAGUAGG UUUAU C GUUUg   u
 ||| |||| || ||||||| ||||| | |||||   u
 aua uagu gu uucaucc aaaua g caaac   c
a   g    c  u       c     u c     uua 

>bmo-mir-2797d (-29.80)   [bmo-miR-2797d:11-32]

-----------------ugucguguuuA        CAU   C       uug 
                            UAAGUAGA   UGU CGGCUUg   u
                            ||||||||   ||| |||||||    
                            auucgucu   aca gcugaac   u
gcggcgcgugacguagagcagugccaac        aau   a       uac 

>bmo-mir-2798 (-49.60)   [bmo-miR-2798:44-65]

uuca  c    aa                     uau 
    gc acgu  agcgcuaucucugucgcacac   g
    || ||||  |||||||||||||||||||||    
    cg ugua  UCGCGAUAGAGACAGCGUGUg   u
auaa  -    GC                     uag 

>bmo-mir-2799 (-49.00)   [bmo-miR-2799:11-32]

aua                              uu 
   uggaauuAGAGGUUUAUGAACAUGAUGAGu  a
   ||||||||||||||||||||||||||||||  c
   accuuaaucuccaaauacuuguacuacuca  g
caa                              ua 

>bmo-mir-2800 (-18.00)   [bmo-miR-2800:11-33]

aau    a   -      U  G     U      aa    -  u 
   uugu guA GAAUAU GU UCUUG AAACUU  uuca gu g
   |||| ||| |||||| || ||||| ||||||  |||| || a
   aaca cgu uuuaua ca aggac uuuggg  aagu ca g
uuu    -   g      c  -     -      aa    a  c 

>bmo-mir-2801 (-26.90)   [bmo-miR-2801:11-34]

-          GUG      -   G -  - UG  -AA       c 
 cacauguuua   GAAUCU UGU A CU U  UA   Gugcuug a
 ||||||||||   |||||| ||| | || |  ||   |||||||  
 guguacgaau   uuugga aca u gg a  gu   uacggac a
g          ---      g   g c  u gu  gcg       u 

>bmo-mir-2803 (-27.80)   [bmo-miR-2803:11-32]

ccau     a    C U   -      C     ca a    
    ggcuu UGGA G UAC CAAUGC AGGGA  g gcc 
    ||||| |||| | ||| |||||| |||||  | || a
    ccgga gccu u aug guuacg uccuu  c cga 
ugcu     c    c c   a      a     cg -    

>bmo-mir-2804-1 (-23.70)   [bmo-miR-2804*:13-34] [bmo-miR-2804:41-62]

gaagacauuacaG              A      g 
             UAGUGUAUUACAAU CAAAGU u
             |||||||||||||| ||||||  
             GUCACAUAAUGUUA GUUUca g
aguucauuauAUU              C      a 

>bmo-mir-2808a-2 (-54.00)   [bmo-miR-2808a:11-32] [bmo-miR-2808a*:44-67]

-------gga                             ga 
          cgugcuuCGUAGAAUCUACCAUCGGAUCG  a
          |||||||||||||||||||||||||||||   
          GCAUGAAGCGUCUUAGAUGGUGGCcuagc  a
aucguucucg                             gc 

>bmo-mir-2805 (-24.90)   [bmo-miR-2805:40-59]

c       cuc  ag   -a   -     u    - u 
 uguugga   ua  ucc  ggu cguca ggag g c
 |||||||   ||  |||  ||| ||||| |||| |  
 acaaccu   au  AGG  CCA GCAGU CCUU c g
a       ---  AA   CA   A     -    g a 

>bmo-mir-2807a-1 (-39.30)   [bmo-miR-2807a:65-86]

u        ag c           a          cu     -au  u 
 aaaaguua  u aaauuuguaug aguuggaacg  ugccu   gu u
 ||||||||  | ||||||||||| ||||||||||  |||||   || g
 uuuucaau  A UUUAAACAUAC UCGACCUUgu  acggg   cg c
-        gg C           G          -c     gau  c 

>bmo-mir-2780a-2 (-19.40)   [bmo-miR-2780a:11-33]

-   cggu  aAA      -       A A   --AUgg      g 
 cca    ga   GGGUGU UAAAUGA G CUU      cuucgg c
 |||    ||   |||||| ||||||| | |||      |||||| a
 ggu    cu   cucgua guuugcu c gga      gaagcu u
a   -aau  --g      a       a a   caaaaa      g 

>bmo-mir-2808a-1 (-22.71)   [bmo-miR-2808a:11-32]

-    g    -------    A A    A -  UC      ga 
 agcc ugcu       uCGU G AUCU C CA  GGAUCG  a
 |||| ||||       |||| | |||| | ||  ||||||   
 ucgg guga       agcg c uaga g gu  ccuagc  a
g    -    cucaaag    g c    a a  ca      gc 

>bmo-mir-2809 (-18.20)   [bmo-miR-2809:11-34]

ua  cg     AAA         ---G UC  -  G -Ug  aac g 
  cu  aagcG   CAGCGAACG    A  AC CU A   cg   c g
  ||  |||||   |||||||||    |  || || |   ||   |  
  ga  uuugu   guuguuugu    u  ug ga u   gc   g a
ac  au     -ga         gaaa uu  a  g uaa  gaa a 

>bmo-mir-2810 (-19.30)   [bmo-miR-2810:11-32]

aa    -aga   -      -GA -        AUU  g 
  guaa    gAG AUUUUC   G AACAGCUA   cg c
  ||||    ||| ||||||   | ||||||||   ||  
  cguu    cuc uagaag   c uugucggu   gc u
uc    gcga   g      acg g        ---  g 

>bmo-mir-2804-2 (-26.60)   [bmo-miR-2804*:19-40] [bmo-miR-2804:47-68]

uucgggugugucauuacaG              A      a 
                   UAGUGUAUUACAAU CAAAGU u
                   |||||||||||||| ||||||  
                   GUCACAUAAUGUUA GUUUca g
------aguucauuauAUU              C      a 

>bmo-mir-2812 (-38.19)   [bmo-miR-2812:60-79]

c      ccug    aau gag   c             agauuau 
 ccuggc    ucag   c   uua uacagccuggacg       g
 ||||||    ||||   |   ||| |||||||||||||        
 gggccg    agUC   G   GAU AUGUCGGACcugc       g
-      --ug    --G AAA   A             cacgccg 

>bmo-mir-2813-1 (-20.90)   [bmo-miR-2813:11-31]

ccaag c     -     UUA      U   Aaga     c 
     c aaaUU CUAGA   AGCCGU GGA    cguca c
     | ||||| |||||   |||||| |||    |||||  
     g uuuga gauuu   uuggca ccu    gcagu a
uugua u     c     ---      u   -aaa     g 

>bmo-mir-2807a-5 (-32.40)   [bmo-miR-2807a:64-85]

aaaa    ag c           g          uuu    a  uu 
    guua  u aaauuuguaug aguuggaaug   gccu ug  u
    ||||  | ||||||||||| ||||||||||   |||| ||  g
    caau  A UUUAAACAUAC UCGACCUUgu   uggg gc  c
uuuc    gg C           G          uac    g  cc 

>bmo-mir-2807a-2 (-38.90)   [bmo-miR-2807a:64-85]

aaa     ag c           g          uu     -au  u 
   aguua  u aaauuuguaug aguuggaacg  ugccu   gu u
   |||||  | ||||||||||| ||||||||||  |||||   || g
   ucaau  A UUUAAACAUAC UCGACCUUgu  acggg   cg c
uuc     gg C           G          -c     gau  c 

>bmo-mir-2816-1 (-21.80)   [bmo-miR-2816:11-30]

c    -cug        -   G  AGA      uuauu 
 ucaa    ucCUCGAG UGA GU   GUCGUg     g
 ||||    |||||||| ||| ||   ||||||      
 aguu    aggaguuu acu cg   cagcac     c
u    uaaa        g   a  --a      cacug 

>bmo-mir-2817 (-18.90)   [bmo-miR-2817:11-31]

u  g      AA       G  UA A   A - u 
 uc uuucca  CAAGACU CG  G CCG G c u
 || ||||||  ||||||| ||  | ||| | | u
 ag gaaggu  guucuga gc  c ggu c g a
c  -      -c       -  cg -   c a u 

>bmo-mir-2818-1 (-19.80)   [bmo-miR-2818:11-30]

cga    --c   -AA GG       C     G 
   aucc   gcC   G  AAGAUAU UGUAU a
   ||||   |||   |  ||||||| ||||| u
   uagg   ugg   c  uucugua auaua a
aug    uau   gac uu       a     a 

>bmo-mir-2819 (-20.30)   [bmo-miR-2819:56-77]

auaaa     uga         cuua     ucca   --ac  uu 
     uuggg   ggauugaua    cgggu    uga    gc  a
     |||||   |||||||||    |||||    |||    ||  c
     gaccc   CUUGGCUAU    GUCCG    ACU    cg  u
cgggc     ---         -CUC     --UA   gccu  cu 

>bmo-mir-2820-1 (-33.40)   [bmo-miR-2820:61-81]

cgucaa    -       a   -      --au     au   a  ug 
      gccu auucaug ucc uuuugc    cgugc  cgu ca  g
      |||| ||||||| ||| ||||||    |||||  ||| ||   
      cgga UAAGUGC AGG AGAACG    gcacg  gcg gu  c
aauucg    A       A   U      ACac     --   -  uc 

>bmo-mir-2821 (-19.07)   [bmo-miR-2821:58-77]

a   ua    auauu    c      -  a  agaaaucgauau 
 guc  guag     ccgg gcuuua gu ac            a
 |||  ||||     |||| |||||| || ||             
 cag  cauc     GGCC CGGGAU CA UG            a
-   ua    -cAGU    A      G  C  cguaauuucauu 

>bmo-mir-2780a-3 (-25.10)   [bmo-miR-2780a:11-33]

-   cgg   aAA      -       A A   --A            
 cca   uga   GGGUGU UAAAUGA G CUU   Uggcuucgguc 
 |||   |||   |||||| ||||||| | |||   |||||||||| a
 ggu   acu   cucgua guuugcu c gga   auugaagcuau 
a   -aa   --g      a       a a   caa            

>bmo-mir-2780b-2 (-19.90)   [bmo-miR-2780b:11-33]

-   cggu  aAA      -       A A   -AAgag      g 
 cca    ga   GGGUGU UAAAUGA G CUU      cuucgg c
 |||    ||   |||||| ||||||| | |||      |||||| a
 ggu    cu   cucgua guuugcu c gga      gaggcu u
a   -aau  --g      a       a a   caaaaa      a 

>bmo-mir-2822-1 (-24.80)   [bmo-miR-2822:40-59]

ggucuua       uuu          a    au 
       ugcaagu   guaaaguguc ccuu  u
       |||||||   |||||||||| ||||   
       acgUUCG   CAUUUUAUAG GGAa  c
guauuaa       CCU          -    gu 

>bmo-mir-2814-2 (-24.10)   [bmo-miR-2814:63-84]

acuugucagcucugcaacaagaaagggca  -       --u         agcuc 
                             cu uugccac   guuuguaga     u
                             || |||||||   |||||||||      
                             GA GAUGGUG   UAAACAUcu     u
-----------------cuagaagucaUG  U       UCU         aaauc 

>bmo-mir-2804-3 (-26.00)   [bmo-miR-2804*:19-40] [bmo-miR-2804:47-68]

u       uuucau  c                A      a 
 ucgggug      ua aGUAGUGUAUUACAAU CAAAGU u
 |||||||      || |||||||||||||||| ||||||  
 aguucau      au UUGUCACAUAAUGUUA GUUUca g
-       -----u  A                C      a 

>bmo-mir-2816-2 (-21.50)   [bmo-miR-2816:11-30]

c    -cug        -   G  AGA      uuauu 
 ucaa    ucCUCGAG UGA GU   GUCGUg     g
 ||||    |||||||| ||| ||   ||||||      
 aguu    aggaguuu acu ca   cagcac     c
u    uaaa        g   a  --a      cacug 

>bmo-mir-2816-3 (-19.40)   [bmo-miR-2816:11-30]

cucaacug        -   G  AGA      uuauu 
        ucCUCGAG UGA GU   GUCGUg     g
        |||||||| ||| ||   ||||||      
        aggaguuu acu ca   cagcac     c
auuuuaaa        g   a  --a      cacug 

>bmo-mir-2818-2 (-20.30)   [bmo-miR-2818:11-30]

c  -    --c   -AA GG       C     G 
 ga aucc   gcC   G  AAGAUAU UGUAU a
 || ||||   |||   |  ||||||| ||||| u
 cu uagg   ugg   c  uucugua auaua a
u  g    uau   gac uu       a     a 

>bmo-mir-2780b-1 (-20.00)   [bmo-miR-2780b:11-33]

-   cggu  aAA      -       A A   --AAgg      g 
 cca    ga   GGGUGU UAAAUGA G CUU      cuucgg c
 |||    ||   |||||| ||||||| | |||      |||||| a
 ggu    cu   cucgua guuugcu c gga      gaagcu u
a   -aau  --g      a       a a   caaaaa      a 

>bmo-mir-2807a-6 (-35.20)   [bmo-miR-2807a:64-85]

agcguaa    a           g          uu     -au  u 
       aacu aaauuuguaug aguuggaacg  ugcuu   gu u
       |||| ||||||||||| ||||||||||  |||||   || g
       uugA UUUAAACAUAC UCGACCUUgu  gcggg   ca c
uuuucaa    C           G          -c     gau  c 

>bmo-mir-2824 (-27.20)   [bmo-miR-2824:67-90]

ca  -    c    --a     c a aaa     ucg  c   gaa    a a 
  cg agag uggu   cugug c g   uugga   uc ugu   gccg g u
  || |||| ||||   ||||| | |   |||||   || |||   |||| |  
  gc ucuc aCCA   GACAC G C   AACUU   Ag gcg   cggu c g
ua  g    -    AUG     C C --A     -CA  u   -ac    a u 

>bmo-mir-2825 (-24.40)   [bmo-miR-2825:61-80]

a     u  -agc      caga   g   aa   -    a  ga  g 
 agugc gg    agcuuu    uug gau  uga ggau cu  ug a
 ||||| ||    ||||||    ||| |||  ||| |||| ||  ||  
 uuaug cc    UCGAAG    AGC CUA  ACu ccug ga  gc g
g     -  guUA      ---A   A   GG   a    -  -a  a 

>bmo-mir-2826 (-25.60)   [bmo-miR-2826:11-33]

---------gaucgcu  aAAA   U    -     G  -AU   ga 
                ga    AGA CGAG GAUCC AU   UGg  c
                ||    ||| |||| ||||| ||   |||   
                cu    ucu gcuc cuagg ug   gcc  c
gcuggggguuagcccg  --cg   -    u     g  auu   gg 

>bmo-mir-2827 (-19.20)   [bmo-miR-2827:11-32]

uuuuauuac   --GA       U   UAC   G  u  ga 
         uCA    CUAUCAG ACG   GCU cg gc  u
         |||    ||||||| |||   ||| || ||   
         agu    ggugguc ugc   cga gc cg  c
------aaa   accc       -   --c   -  -  ac 

>bmo-mir-2808b (-18.10)   [bmo-miR-2808b:48-68]

cuuuu       cua      c   uaa   -   cu   u 
     uuuuugg   ccgaug ugg   ucu cgg  agu a
     |||||||   |||||| |||   ||| |||  |||  
     aaagaCU   GGCUAC AUC   AGA GCu  ucg g
cgcgc       --A      C   -UA   U   --   u 

>bmo-mir-2828 (-20.10)   [bmo-miR-2828:11-31]

--------------uucacaacug   U  GA      AA    Ucc   aa   a 
                        AUA UC  UAUGUG  CGGU   gag  cgu g
                        ||| ||  ||||||  ||||   |||  |||  
                        ugu ag  auacgc  gcua   uuc  gcg u
aucagcuacaagcaccuugugcaa   c  ag      --    uuc   ag   u 

>bmo-mir-2807b (-42.10)   [bmo-miR-2807b:53-74]

u                 c           cguu    g  g 
 uaacucaaauuuguaug aguuggaacag    ccua cg c
 ||||||||||||||||| |||||||||||    |||| || a
 auugaguuuaAACAUAC UCAACUUUGUC    ggau gc a
-                 C           -AAC    -  a 

>bmo-mir-2830-1 (-47.80)   [bmo-miR-2830:45-66]

ga    -         g      gc  c           
  augg aggagugcg ccuggg  ag cgcugaaccc 
  |||| ||||||||| ||||||  || ||||||||| u
  ugcu uucUCGCGC GGACUC  UC GCGAcuuggu 
ug    a         G      UA  A           

>bmo-mir-2831-1 (-43.60)   [bmo-miR-2831:44-65]

g       a                a         u 
 cacagau gucaagcaaaugcuuu uuuguaugu u
 ||||||| |||||||||||||||| ||||||||| c
 gugucua cAGUUUGUUUACGAAA AAACAUaca c
a       c                C         u 

>bmo-mir-2775b (-54.80)   [bmo-miR-2775b:11-33]

aa                     C          aaaa 
  gggagaaaAGUAGGACGUUUC UCCCGCGUGu    u
  ||||||||||||||||||||| ||||||||||     
  cccuuuuuucauccuguagag agggcgcaca    u
cg                     u          aacu 

>bmo-mir-2832 (-21.10)   [bmo-miR-2832:11-33]

-    u    ---      U  -  CG        ---  C  guua     a 
 uuua gaag   gUUGGA AG UG  UUUUGGAU   GU cc    gguua c
 |||| ||||   |||||| || ||  ||||||||   || ||    ||||| u
 aaau cuuc   caacuu uc ac  agagcuug   ca gg    ccagu a
g    -    acu      c  u  ug        acc  u  --aa     g 

>bmo-mir-2833-1 (-18.20)   [bmo-miR-2833:43-65]

aaga      gg    c    g -aa ug   -    u 
    auucgc  uaaa agug a   c  guc cuca a
    ||||||  |||| |||| |   |  ||| |||| u
    uaagug  GUUU UCAU U   G  UAG GAgu g
gaaa      --    U    G AAA GU   A    u 

>bmo-mir-2831-2 (-48.80)   [bmo-miR-2831:43-64]

g   a                              u 
 cac gauggucaagcgaauguuuuguuuguaugu c
 ||| ||||||||||||||||||||||||||||||  
 gug cuaccAGUUUGUUUACGAAACAAACAUaca u
a   g                              u 

>bmo-mir-2834-1 (-18.10)   [bmo-miR-2834:11-30]

uccag      AA      GA  A  C   g 
     uggauU  UAUCGG  CU GA GAC g
     ||||||  ||||||  || || ||| c
     gccuga  guaguc  ga cu cug c
gcaaa      -a      uc  -  u   a 

>bmo-mir-2813-2 (-20.60)   [bmo-miR-2813:11-31]

ccaagcc     -     UUA      U   Aaga     c 
       aaaUU CUAGA   AGCCGU GGA    cguca c
       ||||| |||||   |||||| |||    |||||  
       uuuga gauuu   uuggca ccu    gcagu a
uuguaau     c     ---      u   -aaa     g 

>bmo-mir-2835 (-23.20)   [bmo-miR-2835:53-74]

a    -       ca   ca       -aa     c uc      
 guau ugucucc  uaa  uucauga   guggg a  ccgga 
 |||| |||||||  |||  |||||||   ||||| |  |||| c
 uaug acagAGG  AUU  GAGUAUU   CACUu u  ggucc 
a    g       --   UC       ACA     - uu      

>bmo-mir-2836 (-23.30)   [bmo-miR-2836:11-30]

u     uu      CC   G   --   -  - C   ----    ua 
 gagau  gaCAUC  GCU UAG  ACG AC G gcc    caug  a
 |||||  ||||||  ||| |||  ||| || | |||    ||||   
 cucug  cuguag  ugg auc  ugu ug c cgg    gugu  g
g     --      -u   g   ca   a  u a   uuca    ua 

>bmo-mir-2822-2 (-20.90)   [bmo-miR-2822:43-62]

acg     uau c    uuu          a    au 
   ggucu   g aagu   guaaaguguc ccuu  u
   |||||   | ||||   |||||||||| ||||   
   cuaga   c UUCG   CAUUUUAUAG GGAa  c
aua     --- a    CCU          -    gu 

>bmo-mir-2820-2 (-33.90)   [bmo-miR-2820:61-81]

cgucaa    -       a   -      auc    a  g   aug 
      gccu auucaug ucc uuuugc   gugc uc ugc   g
      |||| ||||||| ||| ||||||   |||| || |||   c
      cgga UAAGUGC AGG AGAACG   Caug ag gcg   c
auuucg    A       A   U      --A    c  g   auu 

>bmo-mir-2837 (-18.40)   [bmo-miR-2837:11-31]

c       auA       C  C         ---u   guuc 
 aaaauga   GAUGGUA UA GUGGGAAUG    ggc    g
 |||||||   ||||||| || |||||||||    |||    c
 uuuuauu   uuauuau au uaccuuuac    ccg    u
u       --a       u  -         uuuu   gucc 

>bmo-mir-2807a-3 (-34.10)   [bmo-miR-2807a:65-86]

u        ag c         g g          uu     -au  u 
 aaaaguua  u aaauuugua g aguuggaacg  ugccu   gu a
 ||||||||  | ||||||||| | ||||||||||  |||||   || g
 uuuuuaau  A UUUAAACAU C UCGACCUUgu  gcggg   cg c
-        gg C         A G          -c     gau  c 

>bmo-mir-2838 (-18.10)   [bmo-miR-2838:11-33]

aaau     ---a   U    AA  U      AUAAa   g     gu 
    gauuu    AAU CAGC  AC CACGGG     cuc cuaug  u
    |||||    ||| ||||  || ||||||     ||| |||||   
    cuaaa    uua gucg  ug gugucu     gag gguau  u
gcuu     cuuc   c    -a  -      ----a   -     au 

>bmo-mir-2839 (-53.90)   [bmo-miR-2839*:11-32] [bmo-miR-2839:44-65]

----aau               A              a 
       cauaccgUCAAACAG GCGCCAGCGCUAUg g
       ||||||||||||||| |||||||||||||| c
       guaUGGCAGUUUGUC CGCGGUCGCgauau g
ugccauu               A              c 

>bmo-mir-2840 (-39.40)   [bmo-miR-2840:11-32]

a uc     gU     CU  A             u 
 g  uccag  AGGAA  GG AGAAGAGGAGGau u
 |  |||||  |||||  || |||||||||||||  
 c  agguc  uucuu  cc ucuucuccuucug u
g ga     uc     cu  c             g 

>bmo-mir-2841 (-18.57)   [bmo-miR-2841:52-72]

u  g   -u   a  -ua       cg  u   uaggaagg 
 gc gcc  guu ug   uuuuagc  ug uac        a
 || |||  ||| ||   |||||||  || |||         
 ug cgg  cAA AC   AGAAUUG  AC Aug        a
c  g   uc   A  UCG       AU  U   ugugagag 

>bmo-mir-2774c (-18.30)   [bmo-miR-2774c:45-65]

aac   a  auuc   cc   gg     a    aaua 
   aac ac    gga  guc  ucuau gagc    u
   ||| ||    |||  |||  ||||| ||||     
   uug ug    CCU  CAG  AGGUG CUCg    c
cua   c  cUUC   UC   -A     G    ccca 

>bmo-mir-2780c (-20.30)   [bmo-miR-2780c:11-33]

-   cggu  aAA      -       AGACUUAGggcuucgggc 
 cca    ga   GGGCGU UAAAUGA                  a
 |||    ||   |||||| |||||||                  u
 ggu    cu   cucgua guuugcu                  a
a   -aau  --g      a       acaggacaaaaagaaccu 

>bmo-mir-2807a-4 (-34.70)   [bmo-miR-2807a:65-86]

u     c  a  c         g g          uu     -au  u 
 aaaag ua cu aaauuugua g aguuggaacg  ugccu   gu u
 ||||| || || ||||||||| | ||||||||||  |||||   || g
 uuuuc au gA UUUAAACAU C UCGACCUUgu  acggg   cg u
-     a  g  C         A G          -c     gau  c 

>bmo-mir-2833-2 (-18.20)   [bmo-miR-2833:43-65]

aaga      gg    c    g -aa ug   -    u 
    auucgc  uaaa agug a   c  guc cuca a
    ||||||  |||| |||| |   |  ||| |||| u
    uaagug  GUUU UCAU U   G  UAG GAgu g
uaaa      --    U    G AAA GU   A    u 

>bmo-mir-2842 (-23.12)   [bmo-miR-2842:11-34]

-     -uuucuU    -A   U  UA   G     Cc 
 ucgac       GAAG  UCC CG  CUG UGGCG  a
 |||||       ||||  ||| ||  ||| |||||   
 agcug       cuuc  agg gu  ggc gcugc  u
g     cugucuu    cg   u  ga   -     cc 

>bmo-mir-2806-2 (-37.40)   [bmo-miR-2806:43-64]

aac          u   -      g           g 
   uuuauucuau gca ugucgg uuagagaagcu u
   |||||||||| ||| |||||| ||||||||||| g
   aaauaagGUA CGU AUAGCC AAUCUCUUCga c
gau          -   C      -           a 

>bmo-mir-2843-1 (-24.80)   [bmo-miR-2843:11-34] [bmo-miR-2843-1*:49-73]

-    uug  gUCUA G   AU   -    G U      ga 
 ggcu   ga     A GAA  UAG GUCG A ACAuac  a
 ||||   ||     | |||  ||| |||| | ||||||   
 ccgA   CU     U CUU  GUC CAGC U Ugugug  u
u    --A  ---AG G   CU   G    G U      au 

>bmo-mir-2814-3 (-48.40)   [bmo-miR-2814:48-69]

a                      --u         agcuc 
 gaucuucaguaccuacuaccac   guuuguaga     u
 ||||||||||||||||||||||   |||||||||      
 cuagaagucaUGGAUGAUGGUG   UAAACAUcu     u
-                      UCU         aaauc 

>bmo-mir-2834-2 (-19.90)   [bmo-miR-2834:11-30]

uccag      AA      GA  A  C   g 
     cggauU  UAUCGG  CU GA GAC g
     ||||||  ||||||  || || ||| c
     gccuga  guaguc  ga cu cug c
gcaaa      -a      uc  -  u   a 

>bmo-mir-2830-2 (-50.70)   [bmo-miR-2830:45-66]

ga    -         g      gc  c           
  augg aggagugcg ccuggg  ag cgcugaaccc 
  |||| ||||||||| ||||||  || ||||||||| u
  ugcc uucUCGCGC GGACUC  UC GCGAcuuggu 
ug    a         G      UA  A           

>bmo-mir-2780d (-18.80)   [bmo-miR-2780d:11-33]

a   cggu  AA  GUG        A A   --AGgg      g 
 cca    ga  AG   UUAAAUGA G CUU      cuucga c
 |||    ||  ||   |||||||| | |||      |||||| a
 ggu    cu  uc   aguuugcu c gga      gaagcu u
a   -aau  gc  gua        a a   caaaaa      a 

>bmo-mir-2804-4 (-24.80)   [bmo-miR-2804*:19-40] [bmo-miR-2804:47-68]

u      uuuucau  c                A      a 
 ucgggu       ua aGUAGUGUAUUACAAU CAAAGU u
 ||||||       || |||||||||||||||| ||||||  
 aguuca       au UUGUCACAUAAUGUUA GUUUca g
-      -----uu  A                C      a 

>bmo-mir-2843-2 (-25.90)   [bmo-miR-2843:11-34] [bmo-miR-2843-2*:63-88]

ggc     -  UC     AAA      CG   ACA      -u   -    u 
   uuugg ag  UAAGG   UUAGGU  GAU   uacgaa  uag ugcg a
   ||||| ||  |||||   ||||||  |||   ||||||  ||| ||||  
   aggcu uc  AUUCC   AGUCCG  CUA   GUGCUU  guc gugc u
-aa     a  UA     -CC      AA   ---      cu   u    g 

>bmo-mir-2845 (-23.92)   [bmo-miR-2845:53-74]

u     g ag  au -    uu    -     a    cccac 
 gccaa a  ua  c cggc  cugg gaugg ucgu     u
 ||||| |  ||  | ||||  |||| ||||| ||||     c
 ugguu u  AU  G GUCG  GACC UUGCC agua     u
u     g ga  GC U    UC    G     -    caaca 

>bmo-mir-2846 (-28.50)   [bmo-miR-2846:11-33]

aauaua    -      A  AA G   UA      acg   gaa   a 
      ucgu GGGAUU CU  U GCG  GUGCGa   cgu   ccg g
      |||| |||||| ||  | |||  ||||||   |||   ||| a
      ggcg cccuga ga  a cgu  uaugcu   gca   ggu c
gacaga    g      a  -- g   gg      -ga   -aa   g 

>bmo-mir-2847 (-26.60)   [bmo-miR-2847:49-72]

a      -------u  -   c   uu g      uc   ug g 
 cccagc        uc cau ggc  g auaaua  cug  c u
 ||||||        || ||| |||  | ||||||  |||  | a
 gggucg        GG GUG CUG  U UGUUAU  gau  g g
-      uauaAUAU  C   A   UU G      uu   gu a 

>bmo-mir-2849-1 (-22.80)   [bmo-miR-2849:11-32]

gugga     -A      ---  A      AC  A      --a      a 
     cguuu  ACUUUA   CG UUAUGG  UC Guucca   aagaua c
     |||||  ||||||   || ||||||  || ||||||   |||||| u
     guaaa  uggagu   gc ggugcc  ag cagggu   uuuugu g
guaaa     gg      ugg  -      aa  -      gua      g 

>bmo-mir-2848 (-24.20)   [bmo-miR-2848:68-88]

ugccgcuaccaaccuugagauaugaguaaauggc    c  ccc   aaa   -   c   u 
                                  ugcc ua   uuc   ccg gaa gca u
                                  |||| ||   |||   ||| ||| |||  
                                  ACGG AU   AAG   GGC CUU cgu a
----------------------caugguggugAA    -  --A   -AC   G   -   c 

>bmo-mir-2849-2 (-25.30)   [bmo-miR-2849:11-32]

gugga     -A      ---  A      AC  A      --a      g 
     cguuu  ACUUUA   CG UUAUGG  UC Guucca   aagaua c
     |||||  ||||||   || ||||||  || ||||||   |||||| u
     guaaa  uggagu   gc ggugcc  ag cagggu   uucugu g
guaaa     gg      ugg  -      aa  -      gua      g 

>bmo-mir-2849-3 (-23.20)   [bmo-miR-2849:11-32]

gugga     -A      ---  A      AC  A      --a      a 
     cguuu  ACUUUA   CG UUAUGG  UC Guucca   aagaua c
     |||||  ||||||   || ||||||  || ||||||   |||||| u
     guaaa  uggagu   gc gguacc  ag cagggu   uuuugu g
guaaa     gg      ugg  -      aa  -      gua      a 

>hvt-mir-H1 (-32.40)   [hvt-miR-H1:48-69]

cuu   -  -a   uu      g     ccg   gcg 
   cgg gc  ccg  caucuc gcgcg   agc   c
   ||| ||  |||  |||||| |||||   |||    
   gCC CG  GGC  GUAGGG CGCGc   ucg   g
---   G  CG   -U      A     uag   auc 

>hvt-mir-H2 (-25.40)   [hvt-miR-H2:47-67]

--gc      uc    - g   -      ----ga  gg 
    ggccga  agcg c cgg cgggcc      cc  c
    ||||||  |||| | ||| ||||||      ||  u
    UUGGCU  UUGC G GCU GCCCgg      gg  c
ucuU      --    A -   U      gcaaua  ag 

>hvt-mir-H3 (-33.10)   [hvt-miR-H3-5p:4-25] [hvt-miR-H3-3p:54-71]

cug    AU GA  G  GG    C        --g  c 
   CGUC  G  UC CG  GGGA Gccgccgc   ga c
   ||||  |  || ||  |||| ||||||||   ||  
   GCGG  C  AG GC  CCCu uggcggug   cu g
cug    CU GG  -  AG    -        uaa  g 

>hvt-mir-H4 (-27.10)   [hvt-miR-H4:1-21] [hvt-miR-H4*:49-74]

--------     A  U   A   G  G  auau     ga 
        GGCGG GG GUG UAU GU Ug    ggugu  u
        ||||| || ||| ||| || ||    |||||  a
        CUGCC CC CAC GUG CG Gc    ccgua  u
caAUGAGG     G  -   G   G  G  guau     ag 

>hvt-mir-H5 (-33.40)   [hvt-miR-H5:3-25] [hvt-miR-H5*:51-73]

ccGCUGGU     -       C   ---      a u      
        GCCGA CGAUCGC GGG   Accggc c uucgc 
        ||||| ||||||| |||   |||||| | |||| g
        UGGCU GCUAGCG CUC   UGGucg g aggcg 
----guag     U       U   CAA      a c      

>hvt-mir-H7 (-26.40)   [hvt-miR-H7-5p:9-33] [hvt-miR-H7-3p:46-70]

    a  aUUU      A    UG  CG    Au  u 
gccu uc    UUCCUA AGCG  CC  GGUU  gc u
|||| ||    |||||| ||||  ||  ||||  ||  
cgga AG    AAGGAU UUGC  GG  CCAa  ug u
    A  GAUU      G    CU  --    ac  a 

>hvt-mir-H8 (-26.80)   [hvt-miR-H8:3-32]

-  -  A      U  C    GG       G G   guau 
 gg GC UGGAUC CU GCGG  UGCGUAG C Ugu    u
 || || |||||| || ||||  ||||||| | |||     
 cc ug gcuuag ga cgcc  auguauc g aca    c
c  a  a      -  -    ua       - -   auua 

>hvt-mir-H9 (-29.10)   [hvt-miR-H9-5p:7-31] [hvt-miR-H9-3p:43-67]

  a   UU          CC  G      GUcua 
gc uac  UCUCAUGGAC  CC AGUUGU     u
|| |||  ||||||||||  || ||||||      
cg AUG  GGAGUACCUG  GG UCGACa     u
  g   CU          CC  A      auugc 

>iltv-mir-I1 (-29.60)   [iltv-miR-I1:9-30] [iltv-miR-I1*:43-66]

cgcaga      U  UU        --     g ag 
      ggAGAC GA  GGGGAAUG  AUUGG a  c
      |||||| ||  ||||||||  ||||| |   
      CCUCUG CU  CUCCUUAC  UAAcc u  u
--gcca      U  UU        CU     g gu 

>iltv-mir-I2 (-37.60)   [iltv-miR-I2:5-28]

cc     A     -    A       C  -gu  ac 
  gcGGA GGCUG UGCG UAGGAGC GA   ac  u
  ||||| ||||| |||| ||||||| ||   ||   
  cgccu ccgau acgc auccucg cu   ug  u
ac     -     g    -       c  auu  aa 

>iltv-mir-I3 (-28.30)   [iltv-miR-I3:44-66]

-  gc   cu      -      c   uuacu  gu 
 cu  ccg  cccgcc ggagac gag     gc  u
 ||  |||  |||||| |||||| |||     ||  u
 ga  GGC  GGGUGG UCUCUG UUC     cg  a
u  gA   UU      G      -   --Uau  ag 

>iltv-mir-I4 (-33.70)   [iltv-miR-I4:8-31]

gu   g               AUGA     -   u 
  cgu uAUGUAUAGCGAGCA    CCGUG Ugg u
  ||| |||||||||||||||    ||||| ||| c
  gua auacguauugcucgu    ggcac acu c
cc   g               --ga     u   c 

>iltv-mir-I5 (-39.90)   [iltv-miR-I5*:6-29] [iltv-miR-I5:42-66]

--    u         CC              gag 
  ucgu CUUCUCGUC  CGUCUUCUUCAGAu   c
  |||| |||||||||  ||||||||||||||    
  agUA GAGGAGCAG  GCAGAAGAAGUcug   u
gg    C         CA              agg 

>iltv-mir-I6 (-31.60)   [iltv-miR-I6*:6-27] [iltv-miR-I6:43-65]

---  u       C  UA      UC U     uc  u 
   uc cuGUCUC UG  CCCUCA  G CGuug  gg c
   || ||||||| ||  ||||||  | |||||  ||  
   ag GACAGAG AC  GGGAGU  C GCAac  cc u
cug  U       U  CG      -- -     --  u 

>mdv2-mir-M32 (-24.20)   [mdv2-miR-M32*:6-28] [mdv2-miR-M32:41-62]

   c      A  C    A   GCG      u 
cug gAUUCC UC UUCG CUA   ACUugu a
||| |||||| || |||| |||   ||||||  
ggc CUGAGG AG AGGC GAU   Ugggcg u
   U      C  C    C   -AA      g 

>hsa-mir-711 (-35.10)   [hsa-miR-711:43-64]

-------a  g    uga         ca    g  g   gc 
        cu acuu   gucucuccu  gggu cu cag  a
        || ||||   |||||||||  |||| || |||   
        ga uGAA   CAGAGAGGG  CCCA GG guc  a
guagaggg  g    -UG         -A    -  G   ga 

>hsa-mir-718 (-38.90)   [hsa-miR-718:42-62]

g   g  -   -   aa a   c      ccc      
 gcc cg gcg cgc  g ugg ggcggg   gggca 
 ||| || ||| |||  | ||| ||||||   |||| c
 cgg gc cGC GCG  C GCC CCGCCU   cccgc 
-   a  a   U   GG C   -      -UC      

>mdo-mir-26-2 (-31.70)   [mdo-miR-26:5-25]

-----   uU         CC           uuu 
     ccg  UCAAGUAAU  AGGAUAGGCug   u
     |||  |||||||||  |||||||||||   c
     ggc  gguucauua  ucuuguccgac   u
ccggg   uu         cc           uuc 

>mdo-mir-26-3 (-28.40)   [mdo-miR-26:7-27]

a  u   U      A  C            accc 
 cc ggU CAAGUA UC AGGAUAGGCugg    a
 || ||| |||||| || ||||||||||||    u
 gg uca guucau ag ucuuauccggcu    u
-  c   c      c  c            acuc 

>mdo-mir-26-1 (-28.90)   [mdo-miR-26:1-21]

------------UU         C          -  guc 
              CAAGUAAUC AGGAUAGGCu gu   c
              ||||||||| |||||||||| ||    
              guucguuag uccuauccgg cg   a
cgguggaggucuuu         u          g  ucg 

>mdo-mir-148 (-28.10)   [mdo-miR-148:44-65]

              ---g a    ca    -   au 
gaggcaaaguucug    g cacu  gacu cug  u
||||||||||||||    | ||||  |||| |||  a
cucUGUUUCAAGAC    C GUGA  CUga gau  g
              AUCA -    --    a   ag 

>mdo-mir-153-2 (-40.00)   [mdo-miR-153:53-74]

a      g      -             gu       -a  aa 
 gcgguu ccggug ucauuuuugugau  ugcagcu  gu  u
 |||||| |||||| |||||||||||||  |||||||  ||  a
 ugucaa gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g      a      U             AU       cc  ag 

>mdo-mir-301 (-31.50)   [mdo-miR-301:51-73]

a     aa  a     c    ---u          ----a       
 cugcu  cg augcu ugac    uuauugcacu     cuguac 
 |||||  || ||||| ||||    ||||||||||     ||||| u
 gacga  gu uaCGA ACUG    GAUAACGUGA     gacauu 
-     aa  c     A    UUAU          Cgauc       

>mdo-mir-190a (-35.20)   [mdo-miR-190a:15-36]

u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cgucc g gaca c  uauacaaacuauaua  ucaac    u
c     u u    u cu               --     cuaa 

>mdo-mir-429 (-28.60)   [mdo-miR-429:45-64]

-   ug   u -          aa       cucgc 
 gau  gug c uuaccagaca  guuagau     u
 |||  ||| | ||||||||||  |||||||      
 cug  uaC G AAUGGUCUGU  UAAUcug     a
a   gu   C U          CA       ucuuu 

>mdo-mir-106 (-27.60)   [mdo-miR-106:7-29]

-- ug   -AA            U    G   guc 
  u  ugu   AAGUGCUUAUAG GCAG UAG   g
  |  |||   |||||||||||| |||| |||   u
  a  aca   uucacgaguguc cguc auc   g
cc gu   acc            c    -   aau 

>mdo-mir-126 (-27.70)   [mdo-miR-126:5-25]

---g   -           U       C cug   c 
    ggu CAUUAUUACUU UGGUACG G   uga a
    ||| ||||||||||| ||||||| |   |||  
    ccg guaauaaugag gccaugc c   acu c
guua   c           u       u -aa   a 

>mdo-mir-139 (-31.50)   [mdo-miR-139:6-23]

-   -      -   U  A            g ga 
 ugu auUCUA CAG GC UGUGUCUccagu u  c
 ||| |||||| ||| || |||||||||||| |  u
 aca uaaggu guc cg acauagagguca g  a
a   a      u   c  -            g ga 

>mdo-mir-140 (-39.30)   [mdo-miR-140:6-27]

    -  A             A       uu   uc 
ccug cC GUGGUUUUACCCU UGGUAGg  acg  a
|||| || ||||||||||||| |||||||  |||   
ggac gg caccaagauggga accaucu  ugu  u
    a  -             c       --   cg 

>mdo-mir-146a (-30.30)   [mdo-miR-146a:15-36]

---------u    c       uU         A  C        gucuu 
          guau uucagcu  GAGAACUGA UU CAUGGGUU     u
          |||| |||||||  ||||||||| || ||||||||      
          uaua aggucga  uucuugacu aa guauccag     g
cuacugucuc    -       -c         c  a        acuau 

>mdo-mir-146b (-27.00)   [mdo-miR-146b:8-29]

cugg    G        A    A    CU  ga  u 
    cucU AGAACUGA UUCC UAGG  gu  gc c
    |||| |||||||| |||| ||||  ||  ||  
    gagg ucuugacu aagg aucc  ua  cg a
----    -        g    -    cg  aa  u 

>mdo-mir-150 (-27.80)   [mdo-miR-150:1-23]

UC    A  -      --A   G     --   aga 
  UCCC AC CCUUGU   CCA AGUcc  auc   g
  |||| || ||||||   ||| |||||  |||    
  gggg ug ggggca   ggu ucggg  ugg   a
uc    c  a      ggg   g     ca   ccc 

>mdo-mir-153-1 (-48.70)   [mdo-miR-153:54-75]

c     g         -             -c       --   au 
 ucaca cugccagug ucauuuuugugau  ugcagcu  agu  u
 ||||| ||||||||| |||||||||||||  |||||||  |||   
 ggugu gacgguuaC AGUGAAAACACUG  ACGUUga  ucg  c
c     g         U             AU       cu   gu 

>mdo-mir-205a (-30.62)   [mdo-miR-205a:5-26]

-------     C           C        ucuca 
       cuugU CUUCAUUCCAC GGAGUCUG     u
       ||||| ||||||||||| ||||||||     a
       gaaua gaagugaggug cuuuagac     u
guacgga     c           a        uaauc 

>mdo-mir-210 (-38.20)   [mdo-miR-210:48-68]

-    cc   g  g    a   acua       u  c - u 
 ccgg  gca gg agcc cug    acgcaca ug g c c
 ||||  ||| || |||| |||    ||||||| || | |  
 ggcc  cgu cc UCGG GAC    UGCGUGU Ac c g a
c    aa   g  a    C   AGUG       C  c a g 

>mdo-mir-215 (-28.34)   [mdo-miR-215:23-44]

-   a aaau  ug      aa A  A     -   U         uuauau 
 gua g    gg  uguagg  a UG CCUAU GAA UGACAGACA      u
 ||| |    ||  ||||||  | || ||||| ||| |||||||||       
 cgu c    cu  auguuc  u ac ggaug cuu acugucugu      u
u   - gugu  gu      cg a  c     u   u         uugaaa 

>mdo-mir-455 (-43.20)   [mdo-miR-455:16-37]

-u  c   c ug  g          U      A   C   gaa 
  cc ugg g  ag gUAUGUGCCC UGGACU CAU Gug   g
  || ||| |  || |||||||||| |||||| ||| |||    
  gg acu c  uc cauauacggg accuga gua cac   c
uu  a   c gu  a          u      c   c   aac 

>mdo-mir-499 (-31.92)   [mdo-miR-499:14-34]

gggc   c      UA       CA          auucu 
    ggg agcugU  AGACUUG  GUGAUGUUUa     u
    ||| ||||||  |||||||  ||||||||||     c
    ccc uugaca  ucugaac  cacuacaagu     u
----   u      ua       aa          guauc 

>mdo-mir-33 (-31.20)   [mdo-miR-33:2-22]

--------          A UU          u g g 
        gGUGCAUUGU G  GCAUUGCAcg c u u
        |||||||||| |  |||||||||| | |  
        cuacgugaca c  uguaacgugc g g c
cggagacc          c uu          c g c 

>mdo-mir-363 (-27.97)   [mdo-miR-363:12-33]

-      u  -gu         CA  A     A    gauaaguu 
 uuuugc gu   CGGGUGGAU  CG UGCAA UUuu        u
 |||||| ||   |||||||||  || ||||| ||||         
 agaacg ca   gucuaccua  gc acguu aaaa        a
c      c  aau         ug  -     a    agaggaua 

>mdo-mir-190b (-27.10)   [mdo-miR-190b:9-29]

--  u     -U               G     -   ga 
  cu cugug  GAUAUGUUUGAUAUU GGUUg uuu  u
  || |||||  ||||||||||||||| ||||| |||   
  gg gacau  uuauacaaacuguaa ucaac aag  u
uu  c     uc               a     u   gg 

>mdo-mir-147b (-29.30)   [mdo-miR-147b:51-72]

u   u    c   ug   a  uc       aaacuagacu    a 
 cua gaau uag  gaa ca  uccgcac          acug a
 ||| |||| |||  ||| ||  |||||||          ||||  
 gau uuua AUC  CUU GU  AGGCGUG          UGac a
g   u    c   GU   C  GA       ----------    c 

>mdo-mir-460 (-29.40)   [mdo-miR-460:15-36]

c       -    aaC UG       CA A        uuuc 
 ugacuuu auag   C  CAUUGUA  C CUGUGUGu    a
 ||||||| ||||   |  |||||||  | ||||||||     
 acugaga uauc   g  guaacau  g gacacgua    u
c       a    aua gu       ac c        cccu 

>mdo-mir-28 (-27.90)   [mdo-miR-28:52-71]

-   ----g  -     ---    -   aug  ag   a     aaa 
 ggu     cu uccgu   gcug ggg   cc  gag ggcaa   u
 |||     || |||||   |||| |||   ||  ||| |||||   g
 ccg     ga agGUA   UGAC CUC   GG  cuc ccguu   g
a   uacaa  g     AGC    A   -GA  AA   -     ccu 

>mdo-mir-195 (-27.40)   [mdo-miR-195:10-31]

cc    cuuU        -AAA          ccugag  a 
  cugg    AGCAGCAC    AAUAUUGGCA      gg a
  ||||    ||||||||    ||||||||||      ||  
  gauc    ucgucgug    uuaugaccgu      cc a
--    ----        agag          -----a  g 

>mdo-mir-151 (-28.00)   [mdo-miR-151:17-37]

u  ug       aca        U     ---C    A 
 ac  ucucccu   uUAGACUG GAGCU    CUUG G
 ||  |||||||   |||||||| |||||    ||||  
 ug  ggggggg   gguuuggu uucgg    ggac G
-  gu       --g        u     ucaa    g 

>mdo-mir-497 (-35.30)   [mdo-miR-497:14-34]

cc    uc   c C    G    C         Uu agu  u 
  ugcc  cgc c AGCA CACA UGUGGUUUG  c   gu a
  ||||  ||| | |||| |||| |||||||||  |   ||  
  augg  gcg g uugu gugu acaccaaac  g   cg u
--    ga   a a    g    c         cu aac  g 

>mdo-mir-551a (-32.20)   [mdo-miR-551a:48-68]

---------u      g      c    g    gga     uu   c 
          gacccu gaaauc agaa gggu   gccug  gga a
          |||||| |||||| |||| ||||   |||||  |||  
          uugggA CUUUGG UCUU CCCA   CGgau  cuu g
aaagguaccg      A      U    A    --G     --   u 

>mdo-mir-551b (-31.00)   [mdo-miR-551b:46-66]

--    a         g      ga a   -cgu  g 
  cccc gaaaucaag augggu  g ccu    gu c
  |||| ||||||||| ||||||  | |||    ||  
  gggG CUUUGGUUC UACCCA  C Gga    ca a
uc    A         A      -G -   aagu  a 

>mdo-mir-599 (-35.60)   [mdo-miR-599:52-71]

cu      a    --         u       gg     a  uu 
  guccag gugu  guuugauaa cugacau  gacag gg  c
  |||||| ||||  ||||||||| |||||||  ||||| ||   
  uagguc caua  CAAACUAUU GACUGUG  UUGuc cu  u
--      -    cc         U       --     a  uu 

>mdo-mir-875 (-28.20)   [mdo-miR-875:12-32]

  u    u  aAU        C  A       uuaa 
uc gugg ac   ACCUCAGU UU UCAGGUG    u
|| |||| ||   |||||||| || |||||||    u
ag cacu ug   uggagucg aa gguccac    a
  u    u  cgu        u  a       uaaa 

>mdo-mir-885 (-30.10)   [mdo-miR-885:47-68]

         - ---a g  a      --   ug -      aag u 
gauuuuggg c    a uc guucac  cac  u cugccu   c u
||||||||| |    | || ||||||  |||  | ||||||   | c
cugaggcuc g    u ag UAGGUG  GUG  G GACGGA   g c
         a gucg g  A      AU   GU C      -ga u 

>mdo-mir-761 (-43.90)   [mdo-miR-761:12-33]

caag                       G GA  g 
    aggaggaGCAGCAGGGUGAAACU A  CA u
    ||||||||||||||||||||||| |  ||  
    uccuccucgucguuucacuuuga u  gu u
auag                       g -g  c 

>mdo-mir-759 (-27.10)   [mdo-miR-759:30-51]

ggauua             acc     u   AG         C    U  Cu 
      uaauaaauuaaau   uaaac gGC  AGUGCAAAC AUUU GA  u
      |||||||||||||   ||||| |||  ||||||||| |||| ||   
      guuguuuaauuua   auuug ucg  uuacguuug uaaa cu  a
-----g             caa     -   -g         -    u  ag 

>mdo-mir-739 (-28.60)   [mdo-miR-739:65-85]

  g        ----g    --g   --g    --     gug u    g 
cg guggagcc     ccgc   ggu   caga  ucuug   g agua c
|| ||||||||     ||||   |||   ||||  |||||   | |||| a
gu uaccUUGG     GGUG   CCG   guuu  agagc   c uuau a
  g        GAAGA    AAG   GAa    ca     aaa -    a 

>mmu-mir-432 (-27.10)   [mmu-miR-432:51-73]

ug   a    -   --cau    ---u     -  -    c 
  ggu gcuc uug     uucc    ggugg gg gcca u
  ||| |||| |||     ||||    ||||| || |||| g
  ucG CGGG GAC     GAGG    ucacc cc cggu g
--   A    U   UAGAU    UUCU     u  u    a 

>mmu-mir-599 (-27.60)   [mmu-miR-599:55-73]

ugcu     -ca   ua         a        ----      a 
    gucca   gug  uuugauaag ugacauag    gagagg a
    |||||   |||  ||||||||| ||||||||    ||||||  
    uaggu   uac  AAACUAUUU ACUGUGUU    cuuucu c
-cag     cca   cC         G        ucca      u 

>mmu-mir-767 (-28.64)   [mmu-miR-767:25-45]

-----   auccauau        ac   U C       UU  C      c    c 
     aga        agguuuuu  uca G ACCAUGG  GU UGAGCA auaa a
     |||        ||||||||  ||| | |||||||  || |||||| |||| u
     ucu        ucuaagga  agu c ugguauc  ca acucgu uguu g
cguca   --gucaau        ga   c u       -c  u      c    c 

>mmu-mir-664 (-28.00)   [mmu-miR-664:38-59]

----------cu         aaa   c         aa 
            ggcugggga   uga uggauagaa  c
            |||||||||   ||| |||||||||  a
            CCGACCCCU   AUU ACUUAUcuu  u
gaaaguacacAU         --C   U         au 

>mml-mir-129-2 (-49.00)   [mml-miR-129:16-36]

cu             -       C   CU      ---     acau 
  gcccuucgugaau CUUUUUG GGU  GGGCUU   GCugu    a
  ||||||||||||| ||||||| |||  ||||||   |||||     
  cgggaggcgcuua gaaaaac cca  cccgaa   cgaua    a
cg             c       c   uu      ggc     acuc 

>mml-mir-526b (-48.70)   [mml-miR-526b:14-36]

           c     U                -G    c 
ucaggcuguga cCUCU GAGGGAAGCACUUUCU  Uugu u
||||||||||| ||||| ||||||||||||||||  ||||  
agucuggcauu ggaga uuuccuucgugaaaga  aaua g
           c     u                aa    a 

>mml-mir-524 (-38.90)   [mml-miR-524:14-35]

--   u        c  A      C          ---    gu 
  uca gcugugac CU CAAAGG AAGCACUUUC   UCuu  c
  ||| |||||||| || |||||| ||||||||||   ||||   
  agu uggcauug ga guuucc uucguggaag   agaa  u
ag   u        u  c      c          aaa    aa 

>mml-mir-516 (-44.90)   [mml-miR-516:16-37]

       cu      A        UAA            g    g 
ucucagg  gugacc UCUGGAGG   GAAGCACUUUcu uuuu u
|||||||  |||||| ||||||||   |||||||||||| |||| g
agaguuu  cauugg agacuuuc   cuucgugaaaga aaga a
       cu      g        ---            a    a 

>mml-mir-571 (-36.82)   [mml-miR-571:78-97]

    cu  uucauaa  -     uaa       c     -  a    uuu u  u u 
ggaa  gc       uc cucag   ggccaac uccau gc ccau   c ug c g
||||  ||       || |||||   ||||||| ||||| || ||||   | || |  
cuuu  cg       AG GGGUC   CCGGUUG AGgug cg ggug   g ac g u
    uu  -uccggG  U     -CA       -     u  -    ucu u  c a 

>mml-mir-595 (-30.80)   [mml-miR-595:54-74]

-   g  u  guuua      --       -    auag   u 
 ccu ca gc     acacca  gcacacu cagu    ucu g
 ||| || ||     ||||||  ||||||| ||||    ||| u
 gga gU UG     UGUGGU  CGUGUGA Gucg    agg a
a   g  C  -----      GU       A    gacg   a 

>mml-mir-603 (-32.50)   [mml-miR-603:61-82]

gauugaugc      u    ucc           ug   cu       ua 
         uguugg uugg   aaaaguaauug  gug  ugccguu  u
         |||||| ||||   |||||||||||  |||  |||||||  a
         auaauu aauc   UUUUCAUUAAC  CAC  ACgguaa  a
---------      c    uCU           GU   AC       ug 

>mml-mir-622 (-39.20)   [mml-miR-622:61-81]

----ag  g    ggacaagua  gg             --a  a  g   c 
      ag agcu         cu  ucucagcagacug   gg ga cac g
      || ||||         ||  |||||||||||||   || || |||  
      uc uCGA         GG  GGAGUCGUCUGAC   cc cu gug c
guagag  g    ---------  UU             Aca  a  g   a 

>mml-mir-892b (-34.80)   [mml-miR-892b:46-67]

--u  aa   c             u    u u     g 
   gc  ugc cuacucagaaagg gcca u augua a
   ||  ||| ||||||||||||| |||| | ||||| u
   cg  aug GAUGGGUCUUUCC CGGU A uguau u
acu  ga   A             U    C C     a 

>mml-mir-541 (-31.20)   [mml-miR-541:10-34]

-   -u     AAA        C    G UC    U   aagug 
 acg  caggg   GGAUUCUG UGUC G  CCAC cca     c
 |||  |||||   |||||||| |||| |  |||| |||      
 ugu  gucuc   ccuaagac acgg u  ggug ggu     a
g   uc     agg        -    g --    -   aagau 

>mml-mir-708 (-44.10)   [mml-miR-708:11-33]

-aa        A           A     C  GGg  aa   ac 
   cugcccuc AGGAGCUUACA UCUAG UG   gu  aug  u
   |||||||| ||||||||||| ||||| ||   ||  |||  u
   gacgggag ucuucgagugu agauc ac   ca  uac  g
agg        a           c     a  --a  ag   ac 

>mml-mir-665 (-34.30)   [mml-miR-665:43-62]

-  u   -c          u      -acc  g  c 
 uc ccu  gaggggucuc gccucu    ca ga u
 || |||  |||||||||| ||||||    || || c
 gg gga  cUCCCCGGAG CGGAGG    gu cu u
c  c   ca          U      ACCA  a  u 

>mml-mir-543 (-27.30)   [mml-miR-543:49-70]

      u  u       u  -     ucuu     - uuu 
gguacu aa gagaagu gc ccgug    uuucg c   a
|||||| || ||||||| || |||||    ||||| |   u
cuauga uu UUCUUCA CG GGCGC    AAAgc g   u
      c  u       -  U     UUAC     a ugu 

>mml-mir-760 (-41.60)   [mml-miR-760:49-68]

--g   cg    c    u   ucca        c    acc 
   gcg  ucgc cccc cag    ccagagcc ggau   u
   |||  |||| |||| |||    |||||||| ||||   c
   cgu  agcg GGGG GUC    GGUCUCGG Cuua   a
caa   aa    A    U   --UG        -    aag 

>mml-mir-1233 (-50.00)   [mml-miR-1233:63-82]

guga        c      aggg    ggga    ca      uc 
    gugggagg cagggc    cagg    gcug  gggccu  g
    |||||||| ||||||    ||||    ||||  ||||||   
    CGCCCUCC GUCCCG    GUcu    cgac  cccggg  g
--GA        U      ---A    ---g    --      ga 

>mml-mir-1234 (-36.90)   [mml-miR-1234:35-56]

-------------         ---g    ga     u   c 
             ugggguggg    cagg  uggcu ggg c
             |||||||||    ||||  ||||| |||  
             ACCCCACCC    GUCC  GCUga ccc u
aggacccacggaC         ACCA    -G     -   g 

>mml-mir-762 (-49.70)   [mml-miR-762:48-69]

gccc     c  g  u      gua      g        
    ggcuc gg uc cggccc   cggucc gccggcc 
    ||||| || || ||||||   |||||| |||||| a
    cCGAG CC AG GCCGGG   GUCGGG cggucgu 
---c     -  G  -      ---      G        

>mml-mir-670 (-37.80)   [mml-miR-670:14-34]

---  u  -ac      UC        U     - UG    ug au 
   gg gg   cugaug  CCUGAGUG AUGUG G  AAcc  a  u
   || ||   ||||||  |||||||| ||||| |  ||||  |  u
   cc cc   gacugu  ggacuuac uauac c  uugg  u  g
cuu  -  guu      ga        u     u cu    gu cc 

>mml-mir-761 (-47.20)   [mml-miR-761:15-36]

uggcaag                       G  A  g 
       aggaggaGCAGCAGGGUGAAACU AC CA u
       ||||||||||||||||||||||| || ||  
       uccuccucgucguuucacuuuga ug gu u
-----ag                       g  -  c 

>mml-mir-764 (-39.80)   [mml-miR-764:14-32]

-----------    ua  a     G   U    -  U        -aug   g 
           aauc  gg ggcaG UGC CACU UG CCUCCUcc    guu g
           ||||  || ||||| ||| |||| || ||||||||    |||  
           uuag  cc cuguc acg guga ac ggaggggg    uaa a
gguugcuuuaa    ua  a     a   -    u  c        gaca   a 

>mml-mir-759 (-31.30)   [mml-miR-759:30-51]

ggauuau             cc     u   AG          A   U  Cu 
       aauaaauuaaaug  uaaac gGC  AGUGCAAACA UUU GA  c
       |||||||||||||  ||||| |||  |||||||||| ||| ||   
       uuguuuaauuuac  auuug ucg  ucacguuugu aaa cu  a
-------             aa     -   -g          -   u  ag 

>mml-mir-711 (-35.10)   [mml-miR-711:43-64]

-------a  g    uga         ca    g  g   gc 
        cu acuu   gucucuccu  gggu cu cag  a
        || ||||   |||||||||  |||| || |||   
        ga uGAA   CAGAGAGGG  CCCA GG guc  a
guagaggg  g    -UG         -A    -  G   ga 

>oan-mir-29b-2 (-31.24)   [oan-miR-29b:52-73]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuuU UGACUAAAGU UACCAC GA Ucua      u
         G          U      -  -    ugucuc 

>oan-mir-92c (-27.10)   [oan-miR-92c:44-65]

u   au       g    c    ga       uuu 
 ucu  gcagguu ggau agug  aaugcug   g
 |||  ||||||| |||| ||||  |||||||    
 aga  UGUCCGA CCUG UCAC  UUAUggu   c
u   gu       A    U    -G       uuc 

>oan-mir-9-2 (-27.30)   [oan-miR-9:8-29]

guug   UC               G      ug a 
    uua  UUUGGUUAUCUAGCU UAUGag  u u
    |||  ||||||||||||||| ||||||  |  
    aau  aagccaauagaucga auacuu  g u
----   ga               a      cu g 

>oan-mir-182 (-36.74)   [oan-miR-182:14-35]

-----------     cu      U       U -G      UCA      ugaggu 
           cccuc  gcugug UUGGCAA G  UAGAAC   CAcugg      a
           |||||  |||||| ||||||| |  ||||||   ||||||       
           gggag  cgguau aaccguu c  aucuug   guggcc      a
acggccgacuc     cc      c       - ag      ---      uagggu 

>oan-mir-218-2 (-37.80)   [oan-miR-218:12-32]

gg        uUU         CU        gg  gaaca 
  ggcuuucc   GUGCUUGAU  AACCAUGU  ug     a
  ||||||||   |||||||||  ||||||||  ||      
  ucggaagg   cacgaacug  uugguaca  ac     u
--        cac         uc        ag  aaaua 

>ptr-mir-500-2 (-39.80)   [ptr-miR-500:11-33]

u      cu -U         UAC       AG g   uuu 
 cccccu  c  AAUCCUUGC   CUGGGUG  A ugc   c
 ||||||  |  |||||||||   |||||||  | |||   u
 ggggga  g  uuaggaacg   gacccac  u acg   g
-      ac uc         ---       -g g   uaa 

>ptr-mir-892b (-29.10)   [ptr-miR-892b:10-31]

  ag   c             UGC    C  uuag 
gc  ugc cUAUUCAGAAAGG   CAGU AC    a
||  ||| |||||||||||||   |||| ||    u
cg  aug ggugagucuuucc   guca ug    u
  ga   a             uuu    c  uaca 

>ptr-mir-664b (-27.00)   [ptr-miR-664b:47-68]

a    aaaa      aa     au  u         ag 
 cauu    ugggcu  gggag  ga uggguagaa  u
 ||||    ||||||  |||||  || |||||||||  a
 guaa    AUCCGG  CCCUC  UU ACUUAUcuu  u
-    aaac      --     CG  U         au 

>ptr-mir-299 (-43.00)   [ptr-miR-299:7-28]

------     a                      uu 
      aagaa UGGUUUACCGUCCCACAUACAU  u
      ||||| ||||||||||||||||||||||  g
      uucuu gccaaauggcaggguguaugua  a
cuaugg     c                      ua 

>ptr-mir-373 (-38.74)   [ptr-miR-373:6-27]

         -     G            uuuuug 
gggauACUC AAAAU GGGGCGCUUUCC      u
||||||||| ||||| ||||||||||||       
cccuguggg uuuua ccucgugaaggg      c
         g     g            ucaugc 

>ptr-mir-497 (-28.20)   [ptr-miR-497:2-23]

-------cC    G    C         U  --   ac 
         AGCA CACA UGUGGUUUG Ac  ggc  u
         |||| |||| ||||||||| ||  |||   
         uugu gugu acaccaaac ug  ccg  g
ggagcgaga    g    c         c  ca   gu 

>ptr-mir-570 (-37.20)   [ptr-miR-570:52-73]

uuauu      a         a     c        c  cac 
     agguug ugcaaaggu auugc guuuuugc au   u
     |||||| ||||||||| ||||| |||||||| ||    
     uccaac aCGUUUCCA UAACG CAAAAGCg ua   u
-----      c         A     U        a  acu 

>ptr-mir-571 (-33.10)   [ptr-miR-571:61-81]

ccuc    a a  -aa      -  u    u   -cuu        cc 
    agua g cc   gcucag ug gcca uuc    gucuguag  a
    |||| | ||   |||||| || |||| |||    ||||||||   
    ucgu c gg   CGAGUC AC CGGU GAG    cggguauc  u
-uau    c -  GAG      U  -    U   Uucu        ug 

>ptr-mir-589 (-41.40)   [ptr-miR-589:24-45]

ucca   ugu  cca     cc   A     -A   C  C       u   u 
    gcc   gc   gcagc  cUG GAACC  UGU UG UCUGAGc ggg a
    |||   ||   |||||  ||| |||||  ||| || ||||||| ||| c
    cgg   cg   cgucg  gac cuugg  gca ac agacuug ucc u
---c   --u  -ac     ca   c     cc   a  a       -   g 

>ptr-mir-596 (-37.60)   [ptr-miR-596:16-36]

agca        cc    CCU  -C     -  --      ac 
    cggccucu  gAAG   GC  CGGCU CC  GCGGGa  c
    ||||||||  ||||   ||  ||||| ||  ||||||  u
    gccggaga  cuuc   cg  gucga gg  cgcccu  g
----        --    --c  uc     c  ua      cc 

>ptr-mir-602 (-42.30)   [ptr-miR-602:18-39]

---------c  u   a   cc     A  C   C A   CUG       cu  g 
          cu cuc ccc  gccuG CA GGG C CAC   CGGCCug  gu u
          || ||| |||  ||||| || ||| | |||   |||||||  ||  
          ga gag ggg  cggac gu cuc g gug   gccggac  ca u
guccccccga  c   a   aa     c  c   u c   --a       -u  c 

>ptr-mir-604 (-35.70)   [ptr-miR-604:61-79]

------a  -    c  g     ccu   a   -u        cacu   ag 
       ga gcau gu cuuga   ucc cgc  ccuguguc    agc  g
       || |||| || |||||   ||| |||  ||||||||    |||   
       cu cgug CA GGACU   AGG GCG  GGAcacag    uug  c
agaggua  a    a  -     --U   -   UC        ucuu   ga 

>ptr-mir-606 (-45.10)   [ptr-miR-606:61-81]

------------      c                 u         a    ug 
            uguauc uugguuuuuaguaguuu acuaugaug ggug  c
            |||||| ||||||||||||||||| ||||||||| ||||  c
            acaUAG AACUAAAAAUCAUCAAA ugauacuac ccac  a
accaguccguga      A                 -         c    cu 

>ptr-mir-623 (-34.20)   [ptr-miR-623:17-38]

-guacaca     ag    CCU       GC       Uu  a   ua     
        guaga  cgUC   UGCAGGG  UGUUGGG  gc ucc  agcu 
        |||||  ||||   |||||||  |||||||  || |||  ||| g
        cguuu  guag   augucuc  guagccc  cg agg  ucgu 
gucuucca     cu    ---       au       uu  -   --     

>ptr-mir-631 (-34.10)   [ptr-miR-631:16-36]

gu      cc    uA A      CG  A  -      a 
  ggggag  uggu  G CCUGGC  AG CC UCAGCu c
  ||||||  ||||  | ||||||  || || |||||| a
  ccucuc  accg  c ggacug  uc gg agucga c
--      ac    -- -      ag  a  u      a 

>ptr-mir-651 (-31.20)   [ptr-miR-651:18-39]

--------g   u  a   c              A   CGA       ucaaa 
         aaa cu uca ugcuuUUUAGGAUA GCU   CUUUUGu     u
         ||| || ||| |||||||||||||| |||   |||||||      
         uuu ga agu acggaaaauccuau uga   gaaaacg     a
uuuguguaa   -  c   a              g   aag       uaaaa 

>ptr-mir-661 (-46.80)   [ptr-miR-661:55-78]

-----   agga    cu    u     g  --   g     cug     ug 
     ccc    gagg  gugc guggg ca  gac caggc   agccc  g
     |||    ||||  |||| ||||| ||  ||| |||||   |||||  u
     ggg    uucc  UGCG CACCC GU  CUG GUCCG   Ucggg  u
ucggu   ---g    ag    -     G  CU   G     ---     cu 

>ptr-mir-762 (-59.70)   [ptr-miR-762:54-75]

  c         g         gua      g        
gc cggcuccgg ucucggccc   cagucc gccggcc 
|| ||||||||| |||||||||   |||||| |||||| a
CG GCCGGGGCC GGGGUCGGG   Gucggg cggucgu 
  A         -         ---      g        

>ptr-mir-670 (-37.80)   [ptr-miR-670:14-34]

---  u  -ac      UC        U     - UG    ug au 
   gg gg   cugaug  CCUGAGUG AUGUG G  AAcc  a  u
   || ||   ||||||  |||||||| ||||| |  ||||  |  u
   cc cc   gacugu  ggacuuac uauac c  uugg  u  a
cuu  -  guu      ga        u     u cu    gu cc 

>ptr-mir-761 (-46.00)   [ptr-miR-761:15-36]

uggcaagc                      G  A  g 
        ggaggaGCAGCAGGGUGAAACU AC CA u
        |||||||||||||||||||||| || ||  
        ccuccucgucguuucacuuuga ug gu u
-----agu                      g  -  c 

>ptr-mir-764 (-36.90)   [ptr-miR-764:14-32]

-----------    ua  ag    G   U    -  U        a  cu g 
           aauc  gg  gcaG UGC CACU UG CCUCCUcc ug  u g
           ||||  ||  |||| ||| |||| || |||||||| ||  | a
           uuag  cc  uguc acg guga ac ggaggagg ac  a a
gguugcuuuaa    ua  au    a   -    u  c        g  au a 

>ptr-mir-759 (-31.30)   [ptr-miR-759:30-51]

ggauuau             cc     u   AG          A   U  Cu 
       aauaaauuaaaug  uaaac gGC  AGUGCAAACA UUU GA  c
       |||||||||||||  ||||| |||  |||||||||| ||| ||   
       uuguuuaauuuac  auuug ucg  ucacguuugu aaa cu  a
-------             aa     -   -g          -   u  ag 

>ptr-mir-711 (-35.10)   [ptr-miR-711:43-64]

-------a  g    uga         ca    g  g   gc 
        cu acuu   gucucuccu  gggu cu cag  a
        || ||||   |||||||||  |||| || |||   
        ga uGAA   CAGAGAGGG  CCCA GG guc  a
guagaggg  g    -UG         -A    -  G   ga 

>ptr-mir-718 (-41.10)   [ptr-miR-718:48-68]

-------   c   g   -   c   caa  u  c     -  c 
       gcg gcg ccg cgg gcg   ga gg ggcgg gc c
       ||| ||| ||| ||| |||   || || ||||| ||  
       cGC UGC GGC GCC CGC   CU Cc ccgcc cg g
cggagcc   -   G   C   C   ---  U  -     a  g 

>rno-mir-202 (-35.30)   [rno-miR-202:9-29]

     u           -A          Ug       
guucc uuUUCCUAUGC  UAUACUUCUU  uggauc 
||||| |||||||||||  ||||||||||  ||||| u
cgagg aaaaggguacg  auauggagaa  aucugg 
     u           cg          --       

>rno-mir-490 (-32.30)   [rno-miR-490:59-80]

uggaaaguucauugu      c      --         g   cac  uua 
               ucgaca caugga  ucuccaggu ggu   gu   g
               |||||| ||||||  ||||||||| |||   ||    
               aguuGU GUACCU  GGAGGUCCA Cca   ca   a
---------------      C      CA         A   ---  uau 

>rno-mir-513 (-28.00)   [rno-miR-513:14-35]

gugugcagug          G    U   U      ggga 
          cuuUUCACAA AAGG GUC UUCAUg    u
          |||||||||| |||| ||| ||||||     
          gaggaguguu uucc cgg aaguac    u
----------          g    -   c      aaaa 

>rno-mir-105 (-30.30)   [rno-miR-105:5-26]

----------   u  A                    g ug 
          uag CA GUGCUCAGAUGUCUGUGGUg c  c
          ||| || |||||||||||||||||||| |  u
          auc gu uacgaguuuguaggcacuau g  u
caucuauggu   -  g                    - ua 

>rno-mir-220-1 (-30.50)   [rno-miR-220:14-34]

-------------       a    u  ACCA        GAGA    g 
             gcauuau gggc CC    CAGUGUCA    CCUu g
             ||||||| |||| ||    ||||||||    ||||  
             cguagua cuug gg    gucgcagu    ggag g
cucaugggucugg       -    u  --aa        -acg    u 

>rno-mir-1224 (-41.60)   [rno-miR-1224:1-21]

G      CU          ------    u   accau      c 
 UGAGGA  GGGGAGGUGG      AGgg agu     uagagc a
 ||||||  ||||||||||      |||| |||     ||||||  
 acuccu  cuucuccacc      uccc ucg     gucucg g
g      cu          ccccuc    -   acucu      a 

>rno-mir-362 (-29.30)   [rno-miR-362:5-28]

cuc           ACC        AA   u  u 
   gAAUCCUUGGA   UAGGUGUG  Ugc gc u
   |||||||||||   ||||||||  ||| ||  
   cuuaggaacuu   guccacac  acg ug c
aaa           ---        -a   -  a 

>rno-mir-511 (-28.20)   [rno-miR-511:11-31]

--   a    -  A  C        CU    UCAg    uaa 
  gau ccca cc UG CUUUUGCU  GCAC    uaca   u
  ||| |||| || || ||||||||  ||||    ||||    
  cua gggu gg ac gaaaacga  ugug    gugu   c
ac   g    a  -  a        --    -uaa    uua 

>rno-mir-504 (-48.00)   [rno-miR-504:9-30]

---    -            G     A    -G    gaa 
   cugu ugggAGACCCUG UCUGC CUCU  UCug   a
   |||| |||||||||||| ||||| ||||  ||||    
   gaca acccuuugggac ggacg gagg  agac   c
gga    u            g     a    ga    auu 

>rno-mir-544 (-27.32)   [rno-miR-544:47-68]

---   cua    u           -     u   gauug 
   cac   ggga cuuguuaaaaa gcaga ucu     a
   |||   |||| ||||||||||| ||||| |||     g
   gug   cuCU GAACGAUUUUU CGUCU Aga     g
gua   -aa    C           A     U   accag 

>rno-mir-568 (-27.80)   [rno-miR-568:15-34]

--       -----        U      A  U      ACuuc       g 
  guauaca     cuauauuA GUAUAA UG AUACAC     uauaugu c
  |||||||     |||||||| |||||| || ||||||     |||||||  
  cgugugu     gauauggu cauauu au uaugug     auauaca c
cg       uugug        -      -  c      -acau       c 

>rno-mir-582 (-33.94)   [rno-miR-582:11-32]

-----         aUA            CA     Uaaucu 
     acucuuugg   CAGUUGUUCAAC  GUUAC      a
     |||||||||   ||||||||||||  |||||       
     ugggaaacc   gucaacaaguug  caaug      a
aaacg         caa            uc     uuaauc 

>rno-mir-592 (-39.00)   [rno-miR-592:18-40]

u   --a     c     cA        A    C        gu    a 
 gau   uuaug caugg  UUGUGUCA UAUG GAUGAUGU  ugug u
 |||   ||||| |||||  |||||||| |||| ||||||||  ||||  
 cua   aaugc guacu  aacgcagu gugc cuacugcg  acac g
a   cag     a     ac        g    a        --    g 

>rno-mir-615 (-61.00)   [rno-miR-615:17-38]

uc    -    c          UC     U        Cu    g ug 
  ggga gggg gggagGGGGG  CCCGG GCUCGGAU  cgag g  c
  |||| |||| ||||||||||  ||||| ||||||||  |||| |  u
  cccu cccc ccuucucccu  ggguc cgagccug  gcuu u  u
--    a    -          cu     -        --    g ua 

>rno-mir-628 (-30.60)   [rno-miR-628:21-42]

agcuguugugucgc       U    A   A     G       gcaa 
              uuccucA GCUG CAU UUUAC AGAGGgu    u
              ||||||| |||| ||| ||||| |||||||     
              ggggagu ugac gug gaaug ucuucca    u
-------------u       -    g   a     g       auac 

>rno-mir-632 (-28.00)   [rno-miR-632:47-65]

g  g    --   gga   -         -    --g   g 
 gu gcug  acg   ggu ggagauaga acga   ggu u
 || ||||  |||   ||| ||||||||| ||||   |||  
 cg uggu  ugc   CCG CCUUUGUCU UGuu   ccg c
g  g    gg   AGG   U         G    uua   g 

>rno-mir-653 (-27.26)   [rno-miR-653:17-37]

-    uu  -     u     U       UU     C     caagcu 
 auuu  ca uucuu caGUG UGAAACA  CUCUA UGaac      c
 ||||  || ||||| ||||| |||||||  ||||| |||||      c
 ugaa  gu aagaa guuau acuuugu  ggggu acuug      a
a    uc  u     c     c       uu     c     aacaaa 

>rno-mir-668 (-34.10)   [rno-miR-668:43-66]

--    a   u   ---        g            
  ggua gug gcc   ucggguga caugcacuuaa 
  |||| ||| |||   |||||||| |||||||||| c
  CCAU CAC CGG   GGCUCACU GUauguggaug 
ac    -   C   CUC        -            

>rno-mir-802 (-31.60)   [rno-miR-802:17-38]

-----guc      u     g C   A          A   UU    c au 
        cuauua uugca U AGU ACAAAGAUUC UCC  gugu g  c
        |||||| ||||| | ||| |||||||||| |||  |||| |   
        gauaau aaugu a uca uguuucugag agg  cacg c  a
ccacuucc      u     g c   c          -   --    a au 

>rno-mir-675 (-57.50)   [rno-miR-675:15-36]

u  --              U    AA     CC      g    
 gc  ggcccagggacUGG GCGG  AGGGC  ACAGUg acu 
 ||  |||||||||||||| ||||  |||||  |||||| || u
 cg  cugggucccugacu cgcc  ucccg  ugucac ugg 
a  gu              -    aa     ua      g    

>rno-mir-875 (-28.40)   [rno-miR-875:11-32]

ucu    u  UAUA       U  A       uuca 
   gugg ac    CCUCAGU UU UCAGGUG    u
   |||| ||    ||||||| || |||||||    u
   cacc ug    ggaguca aa aguccac    c
--u    c  cguc       c  a       uaaa 

>rno-mir-876 (-33.70)   [rno-miR-876:9-30]

--   ug         U  C  UG         au  aa 
  aag  cugUGGAUU CU UG  AAUCACCAu  ca  u
  |||  ||||||||| || ||  |||||||||  ||  c
  uuc  gauacuuaa ga ac  uugguggug  gu  u
ac   gu         u  a  gu         gu  aa 

>rno-mir-665 (-42.50)   [rno-miR-665:55-74]

--agaaca     u   -           u      aucca  a    cu 
        ggguc ccu ugaggggccuc gccucu     gg uuau  u
        ||||| ||| ||||||||||| ||||||     || ||||   
        uccgg gga auUCCCUGGAG CGGAGG     CC Agua  u
ucucauuc     c   c           U      ----A  -    uu 

>rno-mir-935 (-55.60)   [rno-miR-935:56-78]

     c  c    g    a             ccc  c   caucc 
ggcgg gg gcgg cggc guggcgggagcgg   cu ggc     u
||||| || |||| |||| |||||||||||||   || |||      
ucgcc cu cgcc gcCG CAUCGCCUUCGCC   GA Ccg     c
     -  -    -    C             AUU  C   ucugc 

>rno-mir-201 (-28.10)   [rno-miR-201:13-33]

--     g   -  c  U   U     A      UUc   a 
  guaca uac cu AC CAG AAGGC UUGUUC   uau c
  ||||| ||| || || ||| ||||| ||||||   |||  
  cgugu aug ga ug guc uuccg gacaag   aua u
aa     a   c  -  u   u     c      uaa   a 

>rno-mir-293 (-28.20)   [rno-miR-293:8-29]

--cu        -      G    A      G    u 
    gugauACU CAAACU UGUG CACUUU uuuc u
    |||||||| |||||| |||| |||||| ||||  
    cauuguga guuuga acgc gugaag aagg u
uagc        c      a    c      -    u 

>rno-mir-294 (-28.80)   [rno-miR-294:10-30]

a    c    U            C  A   aa   u 
 uagc augC CAAAAUGGAGGC CU UCU  gcu u
 |||| |||| |||||||||||| || |||  |||  
 gucg ugug guuuuaccuucg ga aga  uga u
-    u    u            u  a   --   a 

>rno-mir-295-1 (-28.20)   [rno-miR-295:13-34]

--   uuu  u  g       U    -     AC     - au 
  cau   gg ga ACUCAAA GUGG GGCAC  UUCug g  u
  |||   || || ||||||| |||| |||||  ||||| |   
  gug   cc cu uggguuu cauc ucgug  aagau c  a
gg   --u  u  g       u    a     -a     g gu 

>rno-mir-465 (-30.60)   [rno-miR-465:11-32]

--u  ag   c          C  UG     GU   ga 
   gc  ugc cUAUUUAGAA GG  CUGGU  Gau  a
   ||  ||| |||||||||| ||  |||||  |||  u
   cg  aug gaugagucuu cc  gacua  uug  g
auu  ga   a          u  gu     gu   aa 

>rno-mir-547 (-27.10)   [rno-miR-547:50-69]

-     --a   a      c    u      cc   uuaau 
 gugug   ugu ucacuu agga guacca  cau     g
 |||||   ||| |||||| |||| ||||||  |||      
 cacac   aua AGUGAA UUCU CAUGGU  gua     g
u     gua   G      U    U      Ua   uaaaa 

>rno-mir-667 (-40.94)   [rno-miR-667:56-78]

      --acu     c  u     u ga    -  ag    ccauac 
gugggu     ggccu gg gcugg g  gcag ug  cacg      a
||||||     ||||| || ||||| |  |||| ||  ||||       
cacccg     ccgGA CC CGACC C  CGUC AC  GUgu      u
      gaucc     A  -     - AC    C  -A    cuauau 

>rno-mir-761 (-48.10)   [rno-miR-761:15-36]

u  c  -gu                      G  A  g 
 gg aa   ggaggaGCAGCAGGGUGAAACU AC CA u
 || ||   |||||||||||||||||||||| || ||  
 cc uu   ccuccucgucguuucacuuuga ug gu u
a  c  agu                      g  -  c 

>rno-mir-764 (-48.80)   [rno-miR-764:27-45]

u    ac     aa   uc  a     G   U   -   U           ccua 
 caac  aauca  auc  gg ggcaG UGC CAC AUG CCUCCUccaug    c
 ||||  |||||  |||  || ||||| ||| ||| ||| |||||||||||     
 guug  uuagu  uag  cc cuguc acg gug uac ggaggagguac    a
g    cu     --   ua  a     a   -   a   c           auac 

>rno-mir-666 (-46.60)   [rno-miR-666:19-40]

   -au  --ug    c   -        --A  -     GAG      -  ag 
cug   uc    ccug gug gAGCGGGC   CG GCUGU   AGCCcc cu  g
|||   ||    |||| ||| ||||||||   || |||||   |||||| ||   
gac   ag    ggac cgc cucguccg   gu cgacg   ucgggg ga  u
   agc  ugaa    a   a        cua  g     ---      c  ca 

>rno-mir-759 (-31.40)   [rno-miR-759:30-51]

ggauuau             cc     u   AG          A   U  Cu 
       aauaaauuaaaug  uaaac gGC  AGUGCAAACA UUU GA  c
       |||||||||||||  ||||| |||  |||||||||| ||| ||   
       uuguuuaauuuac  auuug ucg  ucacguuugu aaa cu  a
------c             aa     -   -g          -   u  ag 

>rno-mir-678 (-34.60)   [rno-miR-678:56-77]

gugga    g    g   ag  g      gguau    g    ccg 
     cugu gcuu ccg  cc ugcucc     gaga augg   a
     |||| |||| |||  || ||||||     |||| ||||    
     gacg uGGA GGU  GG ACGGGG     CUCU ugcc   g
-----    g    -   CA  A      -----    G    cac 

>rno-mir-711 (-29.20)   [rno-miR-711:43-64]

ccua    uga        g      g      gg 
    acuu   aucucuuc uagggu cuucag  a
    ||||   |||||||| |||||| ||||||   
    uGAA   UAGAGAGG GUCCCA GGGguc  a
-aac    -UG        -      -      ga 

>rno-mir-496 (-35.30)   [rno-miR-496:47-68]

     u    u        u     gu         uua 
agugu cgaa ggagguug ccaug  guguucauu   u
||||| |||| |||||||| |||||  |||||||||    
ucacg gcuu cCUCUAAC GGUAC  UAUGAGUag   u
     -    u        C     AU         uau 

>iltv-mir-I7 (-52.60)   [iltv-miR-I7:53-74]

                                   a   a 
agaacaaacauucgcaccucaguauuaaaaauaua uau g
||||||||||||||||||||||||||||||||||| |||  
ucuuguuuGUAAGCGUGGAGUCAUAAUUUUuauau aua a
                                   c   u 

>hvt-mir-H10 (-23.30)   [hvt-miR-H10:3-27]

       CUC        C    A   cucua 
ggUCCUU   GCGGAUAG GUAG UGU     u
|||||||   |||||||| |||| |||      
cuaggga   cgccuguu cauc aca     u
       ---        a    g   auugc 

>hvt-mir-H12 (-26.30)   [hvt-miR-H12-5p:4-29] [hvt-miR-H12-3p:40-64]

   UU          C   G  G   GUCua 
uac  UCUUAUGGAC GCC AG UGU     u
|||  |||||||||| ||| || |||      
AUG  GGAGUACCUG CGG UC ACa     u
   CU          C   A  G   auugc 

>hvt-mir-H13 (-31.00)   [hvt-miR-H13:7-30]

   guaUUU    -   UG           C  ua 
ggc      UCUC CGG  AGCGUAGCUGC ug  g
|||      |||| |||  ||||||||||| ||  u
ccg      aggg gcc  uugcaucgacg au  c
   -aucuu    c   ug           -  ug 

>hvt-mir-H14 (-38.00)   [hvt-miR-H14:6-30] [hvt-miR-H14*:43-65]

    cUC                  A    g     
cgga   AUUCAGCGGGCAAUGUAG CUGU uacc 
||||   |||||||||||||||||| |||| ||| a
guCU   UGGGUCGCCCGUUACAUC GAca guga 
    --U                  -    -     

>hvt-mir-H15 (-26.20)   [hvt-miR-H15*:4-25] [hvt-miR-H15:42-64]

       AA  G          U  -  a  u 
cucUCGG  CA GCGUAUUUUU GC gu uu u
|||||||  || |||||||||| || || ||  
GGGAGUC  GU CGCAUAGAAA Cg cg ag a
       GG  A          -  a  a  u 

>hvt-mir-H16 (-30.70)   [hvt-miR-H16-5p:5-25] [hvt-miR-H16-3p:42-62]

ac   -   U       G        -       
  ccU UCA GUCGGGG UGUUUGUG uguuug 
  ||| ||| ||||||| |||||||| ||||| u
  gGA AGU UAGCCCC AUAAAUac acgagg 
-u   C   U       G        g       

>hvt-mir-H17 (-32.50)   [hvt-miR-H17*:5-25] [hvt-miR-H17:42-64]

   cU   C       G        -    u 
gcc  UCA GUCGGGG UGUUUGUG uguu g
|||  ||| ||||||| |||||||| |||| u
UGG  AGU UAGCCCC ACAAAUac acga g
   AC   U       G        g    a 

>hvt-mir-H18 (-24.20)   [hvt-miR-H18-5p:6-28] [hvt-miR-H18-3p:44-67]

agcccA     C    G GG       U     u 
      UCAAA CGGG G  AUUUCAG auguu g
      ||||| |||| |  ||||||| ||||| u
      AGUUU GCCC C  UAGAGUC uacga g
uuAAGC     A    G -A       -     a 

>hvt-mir-H11 (-26.30)   [hvt-miR-H11:55-76]

         u  aaa     ggcag   aua    a     a 
gguggugaa gu   ccguu     cau   uucg cgcga u
||||||||| ||   |||||     |||   |||| |||||  
cUACCAUUU CG   GGUAA     GUA   Gggc gcgcu u
         -  ---     ----A   -GG    g     g 

>peu-MIR2910 (-16.00)   [peu-miR2910:1-21]

    U   G   C A     C g        
UAGU GGU GAG G UUUGU u guuaauu 
|||| ||| ||| | ||||| | |||||| c
aucg ccg cuc c gagca a caauugc 
    u   a   - a     - g        

>peu-MIR2911 (-61.50)   [peu-miR2911:76-95]

      u    aa   --      -  u  gu ga      ga     u 
ucccag cccg  ccc  gucggc ug cg  g  cugcuc  gcugc c
|||||| ||||  |||  |||||| || ||  |  ||||||  |||||  
AGGGUC GGGC  GGG  CGGccg gc gc  c  ggcgag  cggcg c
      -    AG   GC      u  -  ug ug      aa     c 

>peu-MIR2912a (-39.59)   [peu-miR2912a:1-21]

U      --  C          -     c  ugaaca   ucu  gu  c     -a       a  ucuccguu   gcua 
 CUAGAA  CU GAGAUAUGGG Cugaa ac      aug   gg  ug aggac  gauucug cu        guu    a
 ||||||  || |||||||||| ||||| ||      |||   ||  || |||||  ||||||| ||        |||    g
 gaucuu  ga uucuauaucc gauuu ug      uac   cc  ac uucug  uuaagau ga        cag    a
u      uc  -          a     -  --uaag   --u  uc  u     ag       -  uaaaccuu   auuu 

>peu-MIR2912b (-46.60)   [peu-miR2912b:1-21]

UC     --  C            g  c   ---gaau  u       cug        ---a      c   ucuu    u 
  UAGAA  CU GAGAUAUGGGCu aa acu       ag gucuagg   caggacag    uuucga uuc    uugu g
  |||||  || |||||||||||| || |||       || |||||||   ||||||||    |||||| |||    ||||  
  aucuu  ga uucuguaucugg uu uga       uc cagauuc   guuuuguc    aaaguu aag    aaca c
cu     uc  -            a  u   aaguacu  u       uaa        ggca      c   -uuu    u 

>peu-MIR2913 (-54.80)   [peu-miR2913:1-21]

   G C         A        -ca    aug   --ac   cac    au 
GAG U GGGGAUUGC AGGAGagc   acgc   ggc    gcg   ggca  u
||| | ||||||||| ||||||||   ||||   |||    |||   ||||   
cuc a ccccuaacg uccucucg   ugcg   ccg    cgc   ccgu  u
   g c         c        aua    --a   cacc   --a    aa 

>peu-MIR2914 (-24.50)   [peu-miR2914:41-63]

u    - -  ua   a  uu g        au 
 ucug c cc  uca cu  c augguagg  a
 |||| | ||  ||| ||  | ||||||||  g
 AGGC G GG  AGU GG  G UACcaucc  a
G    A U  GC   -  -U G        gg 

>peu-MIR2915 (-38.80)   [peu-miR2915:86-105]

   a   c    gc      - ---gaac  ga     - -    c        a 
ugc aac gagc  ggacgg c       ug  gggga c cacg auaauaua a
||| ||| ||||  |||||| |       ||  ||||| | |||| ||||||||  
AUG UUG CUCG  UCUGCC g       ac  ccccu g gugu uauuauau u
   G   A    -A      C aaccaac  aa     a c    a        a 

>peu-MIR2916 (-28.10)   [peu-miR2916:1-23]

U  -      ---    A   U   AUa   -    -a   ucaac   a 
 GG GGACUC   GAAG CGA CAU   cca uccu  guc     cau a
 || ||||||   |||| ||| |||   ||| ||||  |||     ||| a
 cc ccugag   cuuc guu gua   ggu aggg  cag     gua c
a  g      gau    -   -   ggc   u    ac   ---cc   g 

>bta-mir-2917 (-24.30)   [bta-miR-2917:11-26]

-aaga    ---c   GA       --        -----u  u 
     gcug    uAU  CUGACAU  GGACUucu      cc u
     ||||    |||  |||||||  ||||||||      || u
     cgau    aug  gacugua  ucugaaga      gg c
aagaa    ucac   gg       ga        cacacu  u 

>eca-mir-107b (-29.60)   [eca-miR-107b:50-72]

c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

>eca-mir-1179 (-32.90)   [eca-miR-1179:10-30]

---------        ---gAA         C        Gu u ua 
         gaaaggga      GCAUUCUUU AUUGGUUG  g g  u
         ||||||||      ||||||||| ||||||||  | |   
         cuuuuccu      cguaggaga uaaccgac  c c  u
ucgaucagu        auuuac         c        ug u cg 

>eca-mir-1244 (-20.80)   [eca-miR-1244:46-71]

      uc  --gu    uu  uug    u    uu 
aaccau  ca    aacu  cu   caua guac  a
||||||  ||    ||||  ||   |||| ||||   
UUGGUA  GU    UUGG  GG   Guau caug  g
      GA  AUGU    UU  UGA    -    uc 

>eca-mir-1282 (-39.40)   [eca-miR-1282:9-28]

ccuucu   CG          UC       ----   g   g     cgag   c 
      ucU  UUUGCCUUUU  UGCUUcu    gcu cau aucuc    ucc u
      |||  ||||||||||  |||||||    ||| ||| |||||    |||  
      agg  aaacgggaga  auggagg    cgg gua uagag    ggg g
-----c   aa          cc       guca   g   g     --au   g 

>eca-mir-1296 (-51.10)   [eca-miR-1296:16-37]

accua    a           C CU       U     uu     a 
     ccua cugggUUAGGG C  GGCUCCA CUCCu  aggaa a
     |||| ||||||||||| |  ||||||| |||||  |||||  
     gggu gacccaauccc g  ucggggu gaggg  uucuu c
-uguc    c           a cu       -     gu     c 

>eca-mir-146b (-31.40)   [eca-miR-146b-5p:9-30] [eca-miR-146b-3p:46-67]

  u   u  G        A    A    CU  ga  u 
cc ggc cU AGAACUGA UUCC UAGG  gu  gc c
|| ||| || |||||||| |||| ||||  ||  ||  
gg ccg GG UCUUGACU AGGG AUCC  Ua  cg c
  c   u  -        C    -    CG  aa  a 

>eca-mir-1839 (-22.60)   [eca-miR-1839:1-22]

--AA         AAC        uu gca 
    GGUAGAUAG   AGGUCUUG  u   a
    |||||||||   ||||||||  |   a
    ccaucuauu   uccagaac  a   a
acaa         -ca        uu aau 

>eca-mir-184 (-25.40)   [eca-miR-184:46-67]

acauc         c      ag     -    ug 
     uccuuauca uuuucc  ccagc uuug  a
     ||||||||| ||||||  ||||| ||||   
     GGGAAUAGU AAGAGG  GGUug gaau  c
-ggaU         C      CA     u    cu 

>eca-mir-1892 (-16.90)   [eca-miR-1892:49-69]

ug     -----a uu   cu   g   -a          aga 
  gauau      u  cua  cuu auu  aaguuuugua   a
  |||||      |  |||  ||| |||  ||||||||||    
  uuaua      A  GGU  GGG UGG  UUUAggacau   a
--     ggaggg GG   AG   G   GG          aac 

>eca-mir-190 (-23.60)   [eca-miR-190:6-27]

    - UG               UA     uuau 
cugu g  AUAUGUUUGAUAUAU  GGUug    u
|||| |  |||||||||||||||  |||||     
gaca c  uauacaaacuauaua  ucaac    u
    u cu               --     cuaa 

>eca-mir-1905a (-30.90)   [eca-miR-1905a:42-66]

g        -   au c     auc    c   c 
 ucugcugu ugg  g gcuug   gugg gcc u
 |||||||| |||  | |||||   |||| |||  
 gGAUGGCG ACC  C CGAGC   CACc cgg u
g        C   AU C     -AC    c   g 

>eca-mir-208a (-41.70)   [eca-miR-208a:50-71]

u    g    g           g  c  gg      c  a 
 uccu ugac ggcgagcuuuu gc cg  uuauac ug u
 |||| |||| ||||||||||| || ||  |||||| || g
 agga acug uUGUUCGAAAA CG GC  AAUAug ac c
g    g    g           A  A  AG      c  u 

>eca-mir-208b (-31.00)   [eca-miR-208b:46-67]

--c        g          c   cg        cu 
   cucucagg aagcuuuuug ucg  uuauguuu  c
   |||||||| |||||||||| |||  ||||||||  a
   gggagucU UUUGGAAAAC AGC  AAUAuaag  u
gac        G          A   AG        cc 

>eca-mir-211 (-41.20)   [eca-miR-211:15-36]

---u     uug     U         CA     U    agg  u 
    gugac   ugggc UCCCUUUGU  UCCUU GCCU   gc c
    |||||   ||||| |||||||||  ||||| ||||   || u
    cacug   acucg ggggaaacg  aggga cggg   ug g
ucuc     uug     u         uc     -    --g  a 

>eca-mir-346 (-50.20)   [eca-miR-346:20-42]

-g u      g ug    u    CU    -  AUG        U  guug 
  g cucugu u  ggcg cUGU  GCCC GC   CCUGCCUC cu    c
  | |||||| |  |||| ||||  |||| ||   |||||||| ||     
  c gagacg g  ccgu gacg  cggg cg   ggacggag ga    u
gg -      - gu    c    uc    u  --g        -  aguc 

>eca-mir-628a (-36.40)   [eca-miR-628a:23-44]

auagcugu  u   a      cA  -   A   A             aaaa 
        ug guc cuuccu  UG CUG CAU UUUACUAGAGGgu    u
        || ||| ||||||  || ||| ||| |||||||||||||     
        ac cgg gaaggg  gc gac gug gaaugaucuucca    u
-------u  u   -      aa  u   g   a             auaa 

>eca-mir-7 (-19.50)   [eca-miR-7:1-23]

U  A     A U     U       ucuu    
 GG AGACU G GAUUU GUUGUug    gcu 
 || ||||| | ||||| |||||||    || g
 cc ucuga c cugaa caacaac    cgc 
g  g     c -     -       ---c    

>eca-mir-124 (-23.62)   [eca-miR-124:45-64]

c   cc        a   ga        uaaau 
 ucu  guguucac gcg  ccuugauu     g
 |||  |||||||| |||  ||||||||     u
 aga  CGUAAGUG CGC  GGAAUuaa     c
-   aC        G   AC        cauac 

>eca-mir-1302-1 (-12.10)   [eca-miR-1302:33-53]

aauuuuuc    c  -         ugc 
        agua aa uaugucuca   a
        |||| || |||||||||   a
        UCAU UU AUACAGGGU   c
uuauaAAA    A  C         Uua 

>eca-mir-147b (-23.00)   [eca-miR-147b:49-70]

--         -ua     acca   u    aa     a  a 
  uaggaaugu   aggag    uuc gcac  acugg gu u
  |||||||||   |||||    ||| ||||  ||||| ||  
  auuuuuacA   UCUUC    AAG CGUG  UGacu ua g
gg         UCG     -GUA   C    --     a  g 

>eca-mir-200a (-45.20)   [eca-miR-200a:54-75]

c    - c   g        -             c    uuuc     
 uggg c ccu ugggcauc uuaccggacagug ugga    ucgg 
 |||| | ||| |||||||| ||||||||||||| ||||    ||| c
 accc g gga acuUGUAG AAUGGUCUGUCAC AUcu    agcu 
c    a u   a        C             A    ---c     

>eca-mir-200b (-32.60)   [eca-miR-200b:44-65]

       c   cu   ug     c      u ugu 
gccgucg cau  uac  ggcag auugga g   c
||||||| |||  |||  ||||| |||||| |    
cggcAGU GUA  AUG  CCGUC UAAUcu c   u
       A   --   GU     A      - ugg 

>eca-mir-302a (-30.60)   [eca-miR-302a:44-66]

ccac    u         u           gaa 
    cacu aaacgugga guacuugcuuu   a
    |||| ||||||||| |||||||||||   c
    GUGA UUUGUACCU CGUGAAUgaaa   u
-guA    U         U           aua 

>eca-mir-302b (-25.70)   [eca-miR-302b:50-72]

acucu    a   uu        c ug   u    gacu 
     cuuu acu  aacaugga g  cuu cugu    u
     |||| |||  |||||||| |  ||| ||||     
     gaaG UGA  UUGUACCU C  GAA gaua    g
----u    A   UU        U GU   U    aaac 

>eca-mir-302c (-32.30)   [eca-miR-302c:43-65]

    ug  uu             c    -g  u 
ccuu  cu  aacauggggguac ugcu  ug a
||||  ||  ||||||||||||| ||||  || a
ggaG  GA  UUGUACCUUCGUG AUga  ac a
    GU  CU             A    aa  g 

>eca-mir-302d (-26.63)   [eca-miR-302d:44-66]

  u u   uu                cugugac 
cc c acu  aacauggaggcacuug       u
|| | |||  ||||||||||||||||       u
gg G UGA  UUGUACCUUCGUGAAU       g
  U -   UU                aaaaaga 

>eca-mir-30c (-35.40)   [eca-miR-30c:17-39]

a     cu    ugu U       U   ACA         ---g  a 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    ug g
 |||||  ||||   | ||||||| |||   |||||||||    ||  
 gguac  cguc   c cauuugu ggg   gagggucgg    ac c
a     --    uuc u       u   --a         ugga  u 

>eca-mir-30e (-53.00)   [eca-miR-30e:17-38]

g        uu  ua            UU           g aag u 
 ggcagucu  gc  cUGUAAACAUCC  GACUGGAAGcu u   g g
 ||||||||  ||  ||||||||||||  ||||||||||| |   |  
 ccgucgga  cg  gacauuuguagg  cugacuuucga g   c u
a        --  gc            --           g aga u 

>eca-mir-34 (-29.40)   [eca-miR-34:1-22]

U        -   A          guga   a 
 GGCAGUGU CUU GCUGGUUGUu    gua u
 |||||||| ||| ||||||||||    |||  
 ccgucaua gaa cgacuaacga    cgu a
-        u   -          aggg   g 

>eca-mir-367 (-27.70)   [eca-miR-367:44-65]

  a             ua     c   -   ca 
cc ucacuguugcuaa  ugcaa ucu guu  a
|| |||||||||||||  ||||| ||| |||  u
gg AGUGGUAACGAUU  ACGUU Agg caa  a
  c             UC     A   u   ac 

>eca-mir-429 (-28.30)   [eca-miR-429:42-62]

--     u -          cg       cugcg 
  gggcg c uuaccagaca  guuagau     u
  ||||| | ||||||||||  |||||||      
  ccuGC G AAUGGUCUGU  UAAUcug     c
ua     C U          CA       ucuuc 

>eca-mir-492-1 (-26.62)   [eca-miR-492:2-24]

gAG  G           GAU        ccacc 
   GA CUGCGGGACAA   UCUUgggg     a
   || |||||||||||   ||||||||     u
   cu gacgucuuguu   agaaccuc     u
cag  a           ---        aagag 

>eca-mir-551a (-30.70)   [eca-miR-551a:42-62]

u       c         gag     ucuga 
 ggaaauc agagugggu   gccug     c
 ||||||| |||||||||   |||||      
 CCUUUGG UCUCACCCA   CGgau     c
A       U         --G     cuuua 

>eca-mir-598 (-27.10)   [eca-miR-598:46-67]

u    c    a     gc     gu cg -   gga 
 gaug uggc gugau  cgaug  g  g gcu   a
 |||| |||| |||||  |||||  |  | |||    
 cuac ACUG UACUG  GCUAC  C  c ugg   a
a    u    C     UU     UG AU g   ggu 

>eca-mir-761 (-46.80)   [eca-miR-761:8-29]

--                       G  A  g 
  aggaggaGCAGCAGGGUGAAACU AC CA u
  ||||||||||||||||||||||| || ||  
  uccuccucgucguuucacuuuga ug gu u
ag                       g  -  c 

>eca-mir-1261 (-22.00)   [eca-miR-1261:5-23]

u    ---    UU       GGCUUaagggaauauuguggcu 
 gcuG   UGGA  AGGCUUU                      g
 ||||   ||||  |||||||                      a
 cgac   accu  uucgaag                      u
-    uau    cu       ucaccagaccuaucuucuaguu 

>eca-mir-138 (-36.30)   [eca-miR-138:10-32]

c u   u  AG             UCA     -ac   c  ug 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg ug  gaccacagcacuu   ucggc   uuc uc  a
a u   u  -g             -ua     cca   -  cu 

>eca-mir-140 (-32.20)   [eca-miR-140-5p:2-23] [eca-miR-140-3p:41-61]

cCA             A       uu   uc 
   GUGGUUUUACCCU UGGUAGg  acg  a
   ||||||||||||| |||||||  |||   
   CACCAAGAUGGGA ACCAUcu  ugu  u
-GG             C       --   cg 

>eca-mir-218 (-28.40)   [eca-miR-218:1-21]

UU         CU        gg    -  g 
  GUGCUUGAU  AACCAUGU  uugc ca g
  |||||||||  ||||||||  |||| ||  
  cacgaacug  uugguaca  aaug gu u
ac         cc        -a    a  a 

>eca-mir-328 (-48.70)   [eca-miR-328:47-68]

  ag           ga     u     a aaa  g 
gg  cgggggggcag  ggggc caggg g   gu u
||  |||||||||||  ||||| ||||| |   ||  
cc  GCCUUCCCGUC  UCCCG GUCcc c   cg g
  cU           UC     -     - -ga  u 

>eca-mir-684 (-24.80)   [eca-miR-684:59-77]

guagg     c     -uuag       u      -   --uaaa g 
     gcaau ugucu     gaaggga agauua cuc      a a
     ||||| |||||     ||||||| |||||| |||      |  
     uguug acgGA     CUUCCCU UUUGAu gag      u a
-----     u     CUUAA       -      a   ccuaag a 

>eca-mir-95 (-34.50)   [eca-miR-95:49-70]

a   c     gc          ug           gaga 
 aca agugg  gcucaauaaa  uuuguugaauu    u
 ||| |||||  ||||||||||  |||||||||||    g
 ugu ucacc  CGAGUUAUUU  GGGCAACUUaa    c
g   c     aA          CU           auug 

>eca-mir-129a (-29.60)   [eca-miR-129a-5p:6-26] [eca-miR-129a-3p:50-71]

u    -       C   CU      G   uu cu  c 
 ggau CUUUUUG GGU  GGGCUU Cug  c  cu a
 |||| ||||||| |||  |||||| |||  |  ||  
 ucUA GAAAAAC CCA  CCCGAA gac  g  ga a
-    U       C   UU      g   -u au  c 

>eca-mir-1302b-2 (-49.80)   [eca-miR-1302b:74-94]

ga   c            c       a           auaauu     a c             ugc 
  aug ccgguuaaauuu aauuuca aucaacaauga      uuuua u uaaguauguccca   a
  ||| |||||||||||| ||||||| |||||||||||      ||||| | |||||||||||||   a
  ugc gguuaauuuaaa uuaaagu uaguuguuauu      aAGAU A AUUCAUACAGGGU   u
-c   a            c       a           ----ac     C U             Uua 

>eca-mir-148a (-28.20)   [eca-miR-148a:44-65]

              -  -a    cc    -   aa 
gaggcaaaguucug ag  cacu  gacu cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 

>eca-mir-153 (-25.90)   [eca-miR-153:42-63]

--   -             gu       -a  aa 
  gug ucauuuuugugau  ugcagcu  gu  u
  ||| |||||||||||||  |||||||  ||  a
  uaC AGUGAAAACACUG  ACGUUga  cg  u
gu   U             AU       cc  ag 

>eca-mir-182 (-27.44)   [eca-miR-182:7-31]

     uU       U -G      UCA      ugaggu 
accau  UUGGCAA G  UAGAAC   CACUGg      a
|||||  ||||||| |  ||||||   ||||||       
uggua  aaccguu c  aucuug   guggcc      a
     uc       - ag      ---      uagggu 

>eca-mir-183 (-23.70)   [eca-miR-183:6-27]

cu  g      --AC     GA        --   ac 
  gu UAUGGC    UGGUA  AUUCACUg  uga  a
  || ||||||    |||||  ||||||||  |||   
  ca auaccg    gccau  uaagugac  gcu  g
-a  a      ggaa     --        ug   cu 

>eca-mir-196b (-34.30)   [eca-miR-196b:15-36]

--     uc      uU       U  C           ucca 
  acugg  ggugau  AGGUAGU UC UGUUGUUGGGa    g
  |||||  ||||||  ||||||| || |||||||||||     
  ugacu  ucauua  uccguca ag acgacagcucu    c
gu     --      cu       c  c           cuuu 

>eca-mir-29a (-25.30)   [eca-miR-29a:43-64]

g            uuu       c    ucaa 
 augacugauuuc   ugguguu agag    u
 ||||||||||||   ||||||| ||||    a
 uAUUGGCUAAAG   ACCACGA Ucuu    u
-            UCU       -    uuaa 

>eca-mir-29b (-34.02)   [eca-miR-29b:51-73]

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucUU UGACUAAAGU UACCAC  GAUcug     g
g         G          U      --      uuagu 

>eca-mir-335 (-39.70)   [eca-miR-335:10-32]

-   c        A         C        U  gu 
 gag gggggUCA GAGCAAUAA GAAAAAUG uu  c
 ||| |||||||| ||||||||| |||||||| ||   
 cuc ccuccagu cucguuauu cuuuuugc aa  a
a   u        c         a        c  au 

>eca-mir-489 (-38.80)   [eca-miR-489:53-74]

       c     g            gc c     -auuu a 
guggcag uuggu gucguaugugug  g cauuu     g c
||||||| ||||| ||||||||||||  | |||||     |  
caucguc aauCG CGGCAUAUACAC  C GUGag     c c
       a     G            UA A     gauuu c 

>eca-mir-490 (-32.40)   [eca-miR-490-5p:7-26] [eca-miR-490-3p:44-65]

      C      --         G   cac   u 
ucgaca CAUGGA  UCUCCAGGU GGU   guu a
|||||| ||||||  ||||||||| |||   |||  
aguuGU GUACCU  GGAGGUCCA Cca   uag g
      C      CA         A   -ca   a 

>eca-mir-592 (-38.50)   [eca-miR-592:14-35]

u    c     ca        A    C       -     g 
 uaug cauga  UUGUGUCA UAUG GAUGAUG Ugugu a
 |||| |||||  |||||||| |||| ||||||| |||||  
 augc guacu  aacgcagu gugc cuacugc acacg u
a    a     ac        g    a       g     g 

>eca-mir-653 (-32.50)   [eca-miR-653:12-32]

      cuu              U    GC     -c  gcu 
ucauuc   caGUGUUGAAACAA CUCU  UGaac  ag   c
||||||   |||||||||||||| ||||  |||||  ||    
aguaag   guuauaacuuuguu gagg  acuug  uc   c
      aac              u    uc     ca  aaa 

>eca-mir-671 (-57.60)   [eca-miR-671-5p:14-36] [eca-miR-671-3p:53-73]

    a        A   A      GA           -u   g 
ggcc ggaagagg GGA GCCCUG  GGGGCUGGAGg  gau g
|||| |||||||| ||| ||||||  |||||||||||  |||  
ccgg ccuucuCC CCU CGGGAC  UCUUGGCCUcc  uug a
    g        A   -      --           uu   u 

>eca-mir-96 (-34.40)   [eca-miR-96:9-31]

ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCUu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg ua aaccguga cgugua  aacgag   cgc  c
aaa  g  u        -      cu      ucu   cu 

>eca-mir-101 (-31.40)   [eca-miR-101:39-59]

c                  a    gucag 
 ucaguuaucacagugcug ugcu     u
 |||||||||||||||||| ||||      
 AGUCAAUAGUGUCAUGAC AUgg     u
A                  -    aaauc 

>eca-mir-135b (-46.74)   [eca-miR-135b:15-37]

     --                   CAU          uugcug 
gcucu  gcuguggccUAUGGCUUUU   UCCUAUGUGA      u
|||||  |||||||||||||||||||   ||||||||||       
cgggg  ugacaucggguaccgaaaa   gggauguacu      u
     ag                   -uc          caaauc 

>eca-mir-137 (-32.40)   [eca-miR-137:45-67]

      ug   g           ug a     -  g 
cuucgg  acg guauucuuggg  g uaaua cg a
||||||  ||| |||||||||||  | ||||| || u
ggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
      GA   G           GU -     u  a 

>eca-mir-15b (-20.70)   [eca-miR-15b:4-25]

   U       C  C      UA   a  ac 
cug AGCAGCA AU AUGGUU  CAu cu  a
||| ||||||| || ||||||  ||| ||  g
gau ucgucgu ua uacuaa  gua ga  u
   c       u  u      gc   -  ac 

>eca-mir-16 (-33.00)   [eca-miR-16:10-31]

  uc    cU         UA        C  ag   aau 
gu  cgcu  AGCAGCACG  AAUAUUGG Gu  uga   a
||  ||||  |||||||||  |||||||| ||  |||    
cg  gcga  ucgucgugu  uuauaacc ca  auu   a
  gu    uu         ua        a  -a   aua 

>eca-mir-186 (-35.00)   [eca-miR-186:7-28]

                U     U      ucu  uu 
acuuucCAAAGAAUUC CCUUU GGGCUu   ga  u
|||||||||||||||| ||||| ||||||   ||   
ugaaggguuuuuuaag ggaaa cccgaa   uu  u
                u     -      --u  ua 

>eca-mir-1905b (-26.90)   [eca-miR-1905b:43-64]

       -   a  -c   u a    -u       
cugcugc ugg ug  gcu g uggu  gccccc 
||||||| ||| ||  ||| | ||||  ||||| u
GAUGGCG AUC AC  CGA C ACca  cggggu 
       C   -  CC   C -    cc       

>eca-mir-190b (-29.30)   [eca-miR-190b:11-31]

--u   u     -U               G     -   aa 
   gcu cugug  GAUAUGUUUGAUAUU GGUUg uuu  u
   ||| |||||  ||||||||||||||| ||||| |||   
   uga gacau  uuauacaaacuguaa ucaac aaa  u
ggg   c     uc               a     c   ga 

>eca-mir-197 (-42.40)   [eca-miR-197:48-69]

        c    a       ca    ga   -   a 
ggcugugc gggu gagaggg  gugg  ggu aag g
|||||||| |||| |||||||  ||||  ||| |||  
ccgguaCG CCCA CUCUUCC  CACU  cca uuc c
        A    C       AC    Uc   c   u 

>eca-mir-199a (-25.50)   [eca-miR-199a-5p:1-23] [eca-miR-199a-3p:40-61]

--C       U        C   --UCa  ac 
   CCAGUGU CAGACUAC UGU     gg  a
   ||||||| |||||||| |||     ||   
   GGUUACA GUCUGAUG ACA     cc  a
GAU       C        -   uguug  gu 

>eca-mir-205 (-34.72)   [eca-miR-205:7-28]

      UC           C        ucuca 
cucuug  CUUCAUUCCAC GGAGUCUG     u
||||||  ||||||||||| ||||||||     a
gaggac  gaagugaggug cuuuagac     c
      uu           a        caacc 

>eca-mir-214 (-36.82)   [eca-miR-214:44-65]

u          aca            aacau 
 cugccugucu   cuugcugugcag     c
 ||||||||||   ||||||||||||     c
 GACGGACAGA   GGACGACAuguc     g
U          CAC            cacuc 

>eca-mir-29b-2 (-31.24)   [eca-miR-29b:52-74]

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuUU UGACUAAAGU UACCAC GA Ucua      u
         G          U      -  -    uguuuc 

>eca-mir-29c (-35.40)   [eca-miR-29c:54-75]

a         -  ggc           ucc       ---     u 
 ucucuuaca ca   ugaccgauuuc   ugguguu   cagag c
 ||||||||| ||   |||||||||||   |||||||   ||||| u
 gggggaugu gu   AUUGGCUAAAG   ACCACGA   guuuu g
a         a  ---           UUU       Ucu     u 

>eca-mir-29c-2 (-32.80)   [eca-miR-29c:54-75]

a        acaggc           ucc       ---     u 
 ucucuuac      ugaccgauuuc   ugguguu   cagag c
 ||||||||      |||||||||||   |||||||   ||||| u
 gggggaug      AUUGGCUAAAG   ACCACGA   guuuu g
a        --cagu           UUU       Ucu     u 

>eca-mir-488 (-28.70)   [eca-miR-488:52-72]

    a  a   cu  c   u      a  c        g u 
gaga uc ucu  cc aga aauggc cu ucaaacaa u u
|||| || |||  || ||| |||||| || |||||||| | c
cucu ag aga  GG UCU UUAUCG GA AGUUuguu a c
    c  a   CU  U   -      -  A        g a 

>eca-mir-92b (-48.92)   [eca-miR-92b:49-70]

    g     ga       c            uucuu 
gggc ggagg  cgggacg ggugcaguguug     u
|||| |||||  ||||||| ||||||||||||     c
cccg CCUCC  GCCCUGC UCACGUUAUaac     c
    g     -G       -            cgccc 

>eca-mir-9a (-29.10)   [eca-miR-9a:11-33]

uug   g   UC               G      u  ug 
   guu uua  UUUGGUUAUCUAGCU UAUGAg gg  u
   ||| |||  ||||||||||||||| |||||| ||  g
   uaa aau  aagccaauagaucga auacuu cu  g
-aa   a   ga               a      -  ga 

>eca-mir-1291a (-41.60)   [eca-miR-1291a:14-37]

-  ug     --  --g U    -   A  GA                
 gg  ggaua  cc   g GGCC CUG CU  AGACCAGCAGUuaug 
 ||  |||||  ||   | |||| ||| ||  |||||||||||||| c
 cc  ucugu  gg   c ccgg gac ga  uuugguugucgauau 
a  cu     ca  aaa -    a   -  gc                

>eca-mir-1302d-4 (-37.40)   [eca-miR-1302d:58-78]

u    a      c  auaa   a                          ugc 
 ugga uuuaga aa    uga gaauuuuuuaguguaaguaugucuua   a
 |||| |||||| ||    ||| ||||||||||||||||||||||||||   a
 acuu aagucu uu    auu uuuaaaAAAUCGUAUUCAUACAGGGU   u
a    a      a  ---g   a                          Uua 

>eca-mir-141 (-34.90)   [eca-miR-141:48-69]

   u       --    u        -   ugg  ua 
ggg ccaucuu  ccag acaguguu gga   uc  a
||| |||||||  |||| |||||||| |||   ||  u
ccc GGUAGAA  GGUC UGUCACAA ccu   ag  u
   -       AU    -        U   cga  ug 

>eca-mir-148b (-33.30)   [eca-miR-148b-5p:13-34] [eca-miR-148b-3p:52-73]

   a       uG         U  A    CA    gugg u 
agc uuugagg  AAGUUCUGU AU CACU  GGcu    c c
||| |||||||  ||||||||| || ||||  ||||    | u
ucg aagcucU  UUCAAGACA UA GUGA  CUga    g c
   a       GU         C  C    --    --aa u 

>eca-mir-149 (-53.20)   [eca-miR-149:15-37]

g     -    a   U U G      G     A     -gug  u 
 ccggc gccc ggc C G CUCCGU UCUUC CUCCC    ug g
 ||||| |||| ||| | | |||||| ||||| |||||    ||  
 ggccg cggg ucg g c ggggca ggagg gaggg    gc u
a     u    g   u u g      g     -     agga  c 

>eca-mir-153-2 (-28.80)   [eca-miR-153:44-65]

c     -             -c       --   au 
 cagug ucauuuuugugau  ugcagcu  agu  u
 ||||| |||||||||||||  |||||||  |||   
 guuaC AGUGAAAACACUG  ACGUUga  ucg  c
-     U             AU       cc   cu 

>eca-mir-200c (-31.20)   [eca-miR-200c:42-64]

-     -      a        u   u   gg 
 ccguc uuaccc gcaguguu ggg gcu  u
 ||||| |||||| |||||||| ||| |||  u
 GGUAG AAUGGG CGUCAUAA cuc uga  g
A     U      C        U   -   gg 

>eca-mir-26a (-42.24)   [eca-miR-26a:14-35]

      gg ug  UU         C          guuucc 
ggcugu  c  ga  CAAGUAAUC AGGAUAGGCU      a
||||||  |  ||  ||||||||| ||||||||||       
ucgacg  g  cu  guucauuag ucuuauccgg      u
      ga gu  uu         u          aguguc 

>eca-mir-615 (-66.60)   [eca-miR-615-5p:19-40] [eca-miR-615-3p:62-83]

ac  --        c          UC     U        Cu    g ug 
  gc  gggagggg gggagGGGGG  CCCGG GCUCGGAU  cgag g  c
  ||  |||||||| ||||||||||  ||||| ||||||||  |||| |  u
  cg  uccucccc ccCUCUCCCU  GGGUC CGAGCCUg  gcuu u  u
--  ac        -          CU     -        --    g ua 

>eca-mir-763 (-58.00)   [eca-miR-763:38-59]

      gga   -gc           ga         a CA         AAC   U      
aaugac   ggu   aggcauuuccu  ggauuaaug C  GCUGGGAGG   CAG GGCcc 
||||||   |||   |||||||||||  ||||||||| |  |||||||||   ||| |||| u
uugcug   ucg   ucuguaaagga  cuuaauuac g  cggcccucc   guc ucggu 
      aag   uuu           ac         c ac         ---   -      

>eca-let-7a (-25.20)   [eca-let-7a:5-26]

   uU   G   U             uagaa ua a 
agg  GAG UAG AGGUUGUAUAGUU     u  c u
|||  ||| ||| |||||||||||||     |  | c
ucc  uuc auc uccgacaugucaa     a  g a
   -u   g   c             --uag gg a 

>eca-mir-100 (-20.40)   [eca-miR-100:1-22]

A   CG    UC   A      g  au 
 ACC  UAGA  CGA CUUGUG ug  a
 |||  ||||  ||| |||||| ||   
 ugg  aucu  guu gaacac ac  g
a   au    gu   c      -  cu 

>eca-mir-125b (-37.90)   [eca-miR-125b-5p:15-36]

u    uc   u  -a    U    C           Au     c 
 gcgc  cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
 ||||  ||| ||  |||| |||| |||||||||||  ||||| g
 cgug  gag gu  aggg uucu ggauugggcac  uaaau u
c    cu   c  cg    -    c           -c     u 

>eca-mir-1302c-5 (-39.60)   [eca-miR-1302c:67-87]

c     a           ug g      u aauaau                a  ccau   a 
 aguua auuugaauuuc  g aaacaa g      uuuuuaguguaaguau uc    gca u
 ||||| |||||||||||  | |||||| |      |||||||||||||||| ||    ||| a
 ucaau uagacuuaaag  u uuuguu c      aaAAAUCAUAUUCAUA AG    CGU u
-     g           uu g      - -guaau                C  ----   U 

>eca-mir-139 (-37.40)   [eca-miR-139-5p:4-25] [eca-miR-139-3p:41-62]

       -   U  A            -g  g 
uacUCUA CAG GC CGUGUCUCCAGu  ug c
||||||| ||| || ||||||||||||  ||  
aUGAGGU GUC CG GCGCAGAGGucg  gc u
       U   C  -            ga  c 

>eca-mir-1905c (-45.90)   [eca-miR-1905c:49-73]

c     c    -     -   a  -c   u a      c   c 
 gugug gucc gcugc ugg ug  gcu g uggugg gcc u
 ||||| |||| ||||| ||| ||  ||| | |||||| |||  
 cgcac cggG UGGCG ACC AC  CGA C ACCACc cgg u
a     a    A     C   -  CC   C -      c   g 

>eca-mir-23a (-34.00)   [eca-miR-23a:45-65]

  c   c     -       g    g      c  c 
gg cgg ugggg uuccugg gaug gauuug ug u
|| ||| ||||| ||||||| |||| |||||| || u
cc gcc aCCUU AGGGACC UUAC CUAaac ac g
  a   a     U       G    A      -  u 

>eca-mir-24 (-30.80)   [eca-miR-24:44-65]

    c  g   a         aaca     g  u 
cucc gu ccu cugagcuga    caguu gu u
|||| || ||| |||||||||    ||||| ||  
gagG CA GGA GACUUGACU    GUcag cg g
    A  A   C         --CG     a  u 

>eca-mir-27a (-43.40)   [eca-miR-27a:51-71]

cu    a  a         ug  u       -  g  ca 
  gggg gc gggcuuagc  cu gugagca gg uc  c
  |||| || |||||||||  || ||||||| || ||   
  cccc CG CUUGAAUCG  GA CACUUgu cu ag  a
-g    c  C         GU  -       a  g  cc 

>eca-mir-326 (-59.20)   [eca-miR-326:60-80]

cuc        g            c       uugu  a     guugu 
   gucugucu uugggcuggagg agggccu    ga ggcga     g
   |||||||| |||||||||||| |||||||    || |||||      
   uaggcgga gaccCGACCUCC UCCCGGG    CU CCgcu     c
acu        -            U       ---U  -     agggu 

>eca-mir-34b (-32.70)   [eca-miR-34b-5p:14-36] [eca-miR-34b-3p:51-72]

     cg    -guA       UAA    C        cu u 
gugcu  guuu    GGCAGUG   UUAG UGAUUGUa  c g
|||||  ||||    |||||||   |||| ||||||||  |  
cacgg  caaa    CCGUCAC   AAUC ACUAAcau  g g
     aa    aCUA       CUC    -        uc a 

>eca-mir-34c (-30.00)   [eca-miR-34c:13-35]

     ag     A   A    A     C      C  a 
agucu  uuacu GGC GUGU GUUAG UGAUUG ua u
|||||  ||||| ||| |||| ||||| |||||| ||  
uuaga  aaugg ccg caca caauc acuaac au a
     aa     a   g    c     -      c  a 

>eca-mir-492-2 (-24.92)   [eca-miR-492:1-23]

AGGAG           GAU        ccacc 
     CUGCGGGACAA   UCUUgggg     a
     |||||||||||   ||||||||     u
     gacgucuuguu   agaaccuc     u
--cua           ---        aagag 

>eca-mir-7-2 (-39.20)   [eca-miR-7:15-37]

      g       U     A  A       U      u  ac 
ggucua ugcugug GGAAG CU GUGAUUU GUUGUu ug  g
|||||| ||||||| ||||| || ||||||| |||||| ||   
ucggau gcgacac ccuuc gg cacuaaa caacag au  u
      -       u     -  -       -      u  ca 

>eca-mir-708 (-49.70)   [eca-miR-708:14-36]

   aa        A           A     C  G gg  aa  a 
ggu  cugcccuc AGGAGCUUACA UCUAG UG G  ua  ug c
|||  |||||||| ||||||||||| ||||| || |  ||  || u
ccg  gacgggag ucuucgagugu agauc ac c  gu  ac u
   gg        a           c     a  g aa  ac  g 

>eca-mir-1 (-27.74)   [eca-miR-1:50-71]

u   c                     ac     ugaaca 
 acu agaguacauacuucuuuaugu  ccaua      u
 ||| |||||||||||||||||||||  |||||       
 ugg uuuUAUGUAUGAAGAAAUGUA  GGUau      a
-   u                     -A     cguaac 

>eca-mir-122 (-33.10)   [eca-miR-122:6-27]

      GG       C           --u  c 
agcugU  AGUGUGA AAUGGUGUUUG   gu c
||||||  ||||||| |||||||||||   ||  
ucgaua  ucacacu uuaccgcaaac   ca a
      aa       a           uau  a 

>eca-mir-130b (-36.41)   [eca-miR-130b:50-71]

      c    ca       cc         acugugg   gc 
ggccug cuga  cucuuuc  uguugcacu       gcu  u
|||||| ||||  |||||||  |||||||||       |||   
ccggac ggcU  GGGAAAG  GUAACGUGA       Cga  g
      u    AC       UA         -------   ag 

>eca-mir-133a (-29.90)   [eca-miR-133a:43-64]

    g       aa  u  a        gccuc 
gcua agcuggu  aa gg accaaauc     u
|||| |||||||  || || ||||||||      
cgau UCGACCA  UU CC UGGUUUag     u
    G       AC  C  C        guaac 

>eca-mir-1597 (-40.50)   [eca-miR-1597:46-67]

u              c             ugug  u 
 uuuauuacgugcuu cagagcucuucau    gu u
 |||||||||||||| |||||||||||||    ||  
 aaauaAUGUACGAG GUCUCGAGGAGUa    cg c
a              C             -uaa  a 

>eca-mir-187 (-28.20)   [eca-miR-187:40-61]

ucg    a           - --c   -  cu 
   ggcu caacacgggac c   ggg cg  g
   |||| ||||||||||| |   ||| ||   
   CCGA GUUGUGUUCUG G   ccc gc  c
-GG    C           U CUc   a  cu 

>eca-mir-301b (-45.70)   [eca-miR-301b-5p:20-41] [eca-miR-301b-3p:55-77]

c    --u     -  g        G         ---      A  gug u 
 cucc   gcugg cc cagguGCU UGACGAUGU   UGCACU CU   c c
 ||||   ||||| || |||||||| |||||||||   |||||| ||   | u
 gggg   cgauc gg gucuaCGA ACUGUUAUA   ACGUGA ga   g g
-    uuc     a  -        A         GUA      C  --a a 

>eca-mir-703 (-10.90)   [eca-miR-703:2-22]

      CU   G AG     GA     u  u 
uAAAAC  UCA A  GAAAG  gaaug uu g
||||||  ||| |  |||||  ||||| ||  
auuuug  ggu u  uuuuu  uuuac ag u
      ac   g gu     gg     c  g 

>eca-mir-1204 (-31.50)   [eca-miR-1204:4-24]

-   U  U   CU     C    A       a a 
 gcc CG GGC  GGUCC CACU Uuugaga g g
 ||| || |||  ||||| |||| ||||||| | u
 ugg gc ccg  ccagg gugg aggcucu c c
a   u  u   --     a    -       a a 

>eca-mir-124-2 (-22.30)   [eca-miR-124:37-56]

-        a   ga        uaau 
 guguucac gcg  ccuugauu    g
 |||||||| |||  ||||||||    u
 CGUAAGUG CGC  GGAAUuaa    c
C        G   AC        caua 

>eca-mir-151 (-42.20)   [eca-miR-151-5p:8-28]

    c            CA          u ucu 
ccug ccUCGAGGAGCU  CAGUCUAGUa g   c
|||| ||||||||||||  |||||||||| |    
ggac ggaguuccucga  gucagaucau c   a
    a            -a          c ccu 

>eca-mir-30b (-25.20)   [eca-miR-30b:1-22]

U          U  -A        -ua u 
 GUAAACAUCC AC  CUCAGCUg   c a
 |||||||||| ||  ||||||||   | c
 cauuuguagg ug  gggucggu   g a
u          -  ga        uag u 

>eca-mir-30d (-31.20)   [eca-miR-30d:7-28]

u  g  U         CCC           gug  ac 
 gu gu GUAAACAUC   GACUGGAAGcu   ag  a
 || || |||||||||   |||||||||||   ||   
 ca cg cguuuguag   cugacuuucga   uc  u
-  g  u         --a           --a  gg 

>eca-let-7e (-37.90)   [eca-let-7e:8-29]

  c   cU   G                U  ----g a  a 
cc ggg  GAG UAGGAGGUUGUAUAGU ga     g gg c
|| |||  ||| |||||||||||||||| ||     | ||  
gg ccc  uuc auccuccggcauauca cu     c cc a
  a   cu   g                -  agagg a  c 

>eca-mir-125a (-34.70)   [eca-miR-125a-5p:6-29] [eca-miR-125a-3p:44-65]

 ug  UC  UG   C    UA        ----  a 
c  gg  CC  AGA CCUU  ACCUGUGA    gg c
|  ||  ||  ||| ||||  ||||||||    ||  
g  CC  GG  UCU GGAG  UGGACAcu    cc a
 gu  GA  GU   U    --        ggga  u 

>eca-mir-1302e-6 (-19.40)   [eca-miR-1302e:32-52]

u              cacc    u    
 uuaguauaaguaua    ccca gca 
 ||||||||||||||    |||| || a
 AAUCAUAUUCAUAU    GGGU ugu 
A              ---A    U    

>eca-mir-150 (-41.00)   [eca-miR-150:6-27]

            ACC          -U    u 
cccugUCUCCCA   CUUGUACCAG  Gcug g
||||||||||||   ||||||||||  |||| c
gggacggggggu   ggacaugguc  uggc c
            -ac          cc    u 

>eca-mir-330 (-26.54)   [eca-miR-330:1-22]

      --    -    U   AG    uucaaa 
UCUCUG  GGCC UGUG CUU  GCuc      g
||||||  |||| |||| |||  ||||       
agagac  ccgg acac gaa  cgag      a
      gu    c    -   aa    ccaacu 

>eca-mir-371 (-31.20)   [eca-miR-371-5p:1-20] [eca-miR-371-3p:38-60]

--       CU    G          g     
  ACUCAAA  GUGG GGCACUuucu ugcu 
  |||||||  |||| |||||||||| ||| a
  UGAGUUU  UACC CCGUGAAggg augc 
UG       UU    G          -     

>eca-mir-769 (-43.30)   [eca-miR-769-5p:12-33] [eca-miR-769-3p:51-73]

     cu   cG            U   G    g   cg 
gcccu  gcc  GAGACCUCUGGG UCU AGCU uga  u
|||||  |||  |||||||||||| ||| |||| |||  g
uggga  UGG  UUCUGGGGGCUC AGG UCga gcu  g
     cU   --            U   G    g   uc 

>eca-mir-769b (-44.60)   [eca-miR-769b:5-26]

        A   CU   UU UG        --  u          cu 
gcccGGAA CCU  GGG  C  AGCUguga  cg ggcuucugag  g
|||||||| |||  |||  |  ||||||||  || ||||||||||  g
cgggucuu ggg  cuc  g  uugguacu  gu cugggggcuc  g
        -   -u   ug gu        ug  u          ua 

>eca-mir-99b (-30.00)   [eca-miR-99b:7-28]

     cC         AC   C    C - -   c 
ggcac  ACCCGUAGA  CGA CUUG G g ggc u
|||||  |||||||||  ||| |||| | | |||  
cugug  ugggugucu  gcu gaac c c ccg u
     cc         gu   c    a a g   c 

>eca-mir-10a (-32.99)   [eca-miR-10a:22-44]

----aa  -   --c    uu        A    G     C          uaaggaa 
      ga ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
      || |||   ||||  |||||||| |||| ||||| ||||||||||        
      cu aca   acag  gauguaua gggg aucua gcuuaaacac       u
acucgc  c   aau    uu        a    -     u          ugguguu 

>eca-mir-1180 (-32.80)   [eca-miR-1180:42-63]

    g  u   c      -----           u  a 
gucu cc ggc caccca     gccgggaauag gc c
|||| || ||| ||||||     ||||||||||| ||  
cgga gg cUG GUGGGU     CGGCCUUUguu ug g
    -  -   U      GAGCU           -  a 

>eca-mir-132 (-31.00)   [eca-miR-132:42-63]

-  a a         uuc          -g     
 gg c accguggcu   gauuguuacu  uggg 
 || | |||||||||   ||||||||||  ||| a
 cc G UGGUACCGA   CUGACAAUgg  gcca 
c  - C         CAU          ag     

>eca-mir-142 (-27.50)   [eca-miR-142-5p:4-24] [eca-miR-142-3p:40-62]

-ac           A         Uaa ag a 
   cCAUAAAGUAG AAGCACUAC   c  c c
   ||||||||||| |||||||||   |  |  
   GGUAUUUCAUC UUUGUGAUG   g  g u
guA           C         -Ug ga g 

>eca-mir-144 (-27.90)   [eca-miR-144:43-62]

      g        a         -a    gc 
ggcugg auaucauc uauacugua  guuu  g
|||||| |||||||| |||||||||  ||||   
cugaUC UGUAGUAG AUAUGACAU  caga  a
      A        -         ca    gu 

>eca-mir-193a (-51.60)   [eca-miR-193a-5p:14-35] [eca-miR-193a-3p:48-69]

-   a             U     CG   G  A    ggu 
 ggg gcugagggcUGGG CUUUG  GGC AG UGAg   g
 ||| ||||||||||||| |||||  ||| || ||||    
 ccc cggcuucUGACCC GAAAC  CCG UC Acuu   u
g   c             U     AU   G  A    gac 

>eca-mir-195 (-47.70)   [eca-miR-195:21-41]

acaccca  uc     g  cU          -A         --   ggg 
       gc  cccug cu  AGCAGCACAG  AAUAUUGGC  acu   a
       ||  ||||| ||  ||||||||||  |||||||||  |||    
       ug  gggac ga  ucgucguguc  uuauaaccg  uga   a
-----ag  gu     g  cc          gg         uc   gag 

>eca-mir-196a (-28.40)   [eca-miR-196a:7-28]

      UA   A    C         - Gc u  a 
gugagu  GGU GUUU AUGUUGUUG G  c gg u
||||||  ||| |||| ||||||||| |  | ||  
cacuca  cca caaa uacagcaac c  g uc u
      gc   c    u         a aa -  u 

>eca-mir-21 (-35.80)   [eca-miR-21:8-29]

u     gU        A     A     A    u a 
 gucgg  AGCUUAUC GACUG UGUUG cugu g a
 |||||  |||||||| ||||| ||||| |||| | u
 caguc  ucggguag cugac acaac ggua c c
a     ug        -     g     -    - u 

>eca-mir-212 (-24.40)   [eca-miR-212:40-60]

--  u     cu      c      ccc     
  cc uggcu  agacug uuacug   gggc 
  || |||||  |||||| ||||||   ||| c
  GG ACUGA  UCUGAC AAUgac   cccg 
CC  C     CC      -      --u     

>eca-mir-22 (-39.80)   [eca-miR-22:53-74]

   u   cc               -     a      u  ccu 
ggc gag  gcaguaguucuucag uggca gcuuua gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

>eca-mir-301a (-32.80)   [eca-miR-301a:51-73]

a     aa  a     c    ---u          ----a       
 cugcu  cg augcu ugac    uuauugcacu     cuguac 
 |||||  || ||||| ||||    ||||||||||     ||||| u
 gacga  gu uaCGA ACUG    GAUAACGUGA     gacauu 
g     aa  c     A    UUAU          Cgauc       

>eca-mir-324 (-38.60)   [eca-miR-324-5p:16-38] [eca-miR-324-3p:51-72]

cu      gc     C   U C   A     U   U  aaag 
  gacuau  cuccc GCA C CCU GGGCA UGG GU    c
  ||||||  ||||| ||| | ||| ||||| ||| ||     
  cugaug  gggGG CGU G GGA CCCGU ACC ca    u
--      uu     U   C U   C     C   -  gagg 

>eca-mir-338 (-24.80)   [eca-miR-338-5p:2-23] [eca-miR-338-3p:38-59]

      U   -         -   Ga  a 
cAACAA AUC CUGGUGCUG AGU  ug c
|||||| ||| ||||||||| |||  || a
GUUGUU UAG GACUACGAC Uca  gc c
      U   U         C   ac  a 

>eca-mir-33b (-35.00)   [eca-miR-33b:1-20]

G          UU         g   g 
 UGCAUUGCUG  GCAUUGCac ugu u
 ||||||||||  ||||||||| ||| g
 acgugacggc  cgugacgug gcg a
-          uc         g   g 

>eca-mir-365 (-25.60)   [eca-miR-365:44-65]

aaug     c   c       -----    u   u 
    aggga uuu aggggca     gcug guu u
    ||||| ||| |||||||     |||| |||  
    UUCCU AAA UCCCCGU     ugac cag c
-uUA     A   A       AAUac    u   u 

>eca-mir-423 (-33.00)   [eca-miR-423-5p:5-27] [eca-miR-423-3p:41-63]

ag          -AG   G    A     cua 
  gcUGAGGGGC   AGA CGAG CUUUu   u
  ||||||||||   ||| |||| |||||   u
  UGACUCCCCG   UCU GCUC GAaaa   u
--          GAG   G    -     ccu 

>eca-mir-451 (-39.40)   [eca-miR-451:17-38]

c     a   u    gA                 U 
 uuggg aug cgag  AACCGUUACCAUUACUG G
 ||||| ||| ||||  |||||||||||||||||  
 gaccc ugu guuc  uuggcaaugguaaugau U
a     a   c    uc                 U 

>eca-mir-454 (-24.90)   [eca-miR-454:44-66]

          ---         cu     ----   u 
agaacccuau   cgauauugu  cugcu    gug a
||||||||||   |||||||||  |||||    ||| a
uuuUGGGAUA   GUUAUAACG  GAUga    cgc a
          UUC         -U     gucu   u 

>eca-mir-497 (-27.50)   [eca-miR-497:1-21]

C    G    C         U  --   ac 
 AGCA CACA UGUGGUUUG ac  ggc  u
 |||| |||| ||||||||| ||  |||   
 uugu gugu acaccaaac ug  ccg  g
-    g    c         c  ca   gu 

>eca-mir-632 (-29.40)   [eca-miR-632:47-65]

gugg  g           a   g    cgag   g 
    cu acgggaggcgg gca cgaa    ggc u
    || ||||||||||| ||| ||||    |||  
    GG UGUCCUUUGUC CGU Guuu    ccg c
---A  G           -   -    --ua   g 

>eca-mir-129b (-31.90)   [eca-miR-129b-5p:7-27] [eca-miR-129b-3p:49-70]

      -       C   CU      ---     acau 
gcgaau CUUUUUG GGU  GGGCUU   GCugu    a
|||||| ||||||| |||  ||||||   |||||     
cgcuUA GAAAAAC CCA  CCCGAA   cgaua    a
      C       C   UU      ggc     acuc 

>eca-mir-130a (-22.90)   [eca-miR-130a:43-64]

ga        c      ug  a   uc  ca 
  gcucuuuu acauug  cu cug  ug  c
  |||||||| ||||||  || |||  ||  c
  CGGGAAAA UGUAAC  GA gau  ac  u
UA        U      GU  C   -c  ca 

>eca-mir-1902 (-18.50)   [eca-miR-1902:48-69]

--    -   ug  ga         a   aa      uua 
  guuu cuu  gg  guguuugcu uau  uuggau   u
  |||| |||  ||  ||||||||| |||  ||||||   a
  uaga gag  UC  UACGGAUGA GUG  GAuuug   c
aa    u   uU  AG         C   GA      uaa 

>eca-mir-192 (-29.06)   [eca-miR-192:1-21]

CU        -     A       ugcucu 
  GACCUAUG AAUUG CAGCCag      u
  |||||||| ||||| |||||||      g
  cuggauac uuaac gucgguc      u
-a        c     c       ucccuc 

>eca-mir-194 (-53.30)   [eca-miR-194:15-36]

-g       a    cU         A      G    agu   c 
  ggcuccc cccc  GUAACAGCA CUCCAU UGGA   gcc a
  ||||||| ||||  ||||||||| |||||| ||||   |||  
  ccggggg gggg  uauugucgu ggggug accu   ugg c
ga       c    uc         c      -    ---   u 

>eca-mir-493a (-23.30)   [eca-miR-493a:49-70]

     g      gc  g     a   -----   uaa 
ccugg augcag  ga uuagg gaa     auc   c
||||| ||||||  || ||||| |||     |||    
GGACC UGUGUC  CU GGUUC cuu     uag   a
     G      AU  G     -   auaaa   cua 

>eca-mir-670 (-48.80)   [eca-miR-670:21-42]

   uu     u   u      UC        U     - UG    ug au 
ggu  agggg gga cugacG  CCUGAGUG AUGUG G  AAcc  a  u
|||  ||||| ||| ||||||  |||||||| ||||| |  ||||  |  u
uca  ucccc cuu gacugu  ggacuuac uauac c  uugg  u  g
   cu     -   -      ga        u     u cu    gu cc 

>eca-mir-675 (-55.40)   [eca-miR-675:10-32]

            C    A      CC      -     
cccaggggcUGG GCGG GAGGGC  ACAGUG cacu 
|||||||||||| |||| ||||||  |||||| ||| c
ggguccccgacu cgcc cuuccg  ugucac guga 
            -    a      ua      a     

>eca-mir-106b (-26.00)   [eca-miR-106b:1-21]

UA       G       A -AUa    uc 
  AAGUGCU ACAGUGC G    gugg  c
  ||||||| ||||||| |    ||||   
  uucaugg ugucacg c    uacc  u
cg       g       c aucg    uc 

>eca-mir-1302e-7 (-29.30)   [eca-miR-1302e:32-52]

u                      u    
 uuuuuaguauagguauguccca gca 
 |||||||||||||||||||||| || a
 aaAAAUCAUAUUCAUAUAGGGU ugu 
a                      U    

>eca-mir-1842 (-26.10)   [eca-miR-1842:1-21]

--UG      UG     G      g  ggg 
    GCUCUG  AGGUC GCUCAa gu   u
    ||||||  ||||| |||||| ||    
    cgggac  uccgg cgaguu ua   c
guug      ug     a      a  ggu 

>eca-mir-193b (-27.50)   [eca-miR-193b:44-65]

     u    gu    a    g  a  ag uua 
cagaa cggg  uuug gggc ag ug  u   u
||||| ||||  |||| |||| || ||  |   g
guuuU GCCC  AAAC CCCG UC Ac  a   u
     C    UG    A    G  A  cu uuu 

>eca-mir-25 (-37.80)   [eca-miR-25:52-73]

    a ug   ag    g     uu g     u   --  ac 
ggcc g  uug  aggc gagac  g gcaau gcu  gg  g
|||| |  |||  |||| |||||  | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg  cc  u
    c gu   AG    G     UU A     -   gu  cg 

>eca-mir-365-2 (-35.40)   [eca-miR-365:56-77]

acc      aa        ac           ----   -   uuu 
   gcaggg  aaugaggg  uuuugggggca    gau gug   c
   ||||||  ||||||||  |||||||||||    ||| |||   c
   cguucu  uUAUUCCU  AAAAUCCCCGU    cua cac   a
--a      cg        -A           AAUa   u   cuu 

>eca-mir-590 (-29.60)   [eca-miR-590-5p:12-33] [eca-miR-590-3p:52-72]

        a  G       U       G     ---   aa 
caaucaga ac AGCUUAU CAUAAAA UACAG   uau  u
|||||||| || ||||||| ||||||| |||||   |||   
guuagucu UG UCGAAUA GUAUUUU AUguc   aug  c
        c  A       U       A     caa   ac 

>eca-mir-93 (-22.40)   [eca-miR-93:1-23]

CA       -     U    G   u  g u 
  AAGUGCU GUUCG GCAG UAG gu a u
  ||||||| ||||| |||| ||| || | a
  uucacga cgagu cguc auc ca u c
cc       u     -    -   -  g c 

>eca-mir-107a (-26.01)   [eca-miR-107a:50-72]

c   cu     c gcuucuu           c   u g g 
 uca  gcccu g       uacagugcugc uug u c g
 |||  ||||| |       ||||||||||| ||| | |  
 AGU  CGGGA C       AUGUUACGACG Aac a g a
-   AU     - -------           -   u g u 

>eca-mir-1271 (-27.00)   [eca-miR-1271:1-22]

-        CUC   A           a 
 CUUGGCAC   GUA GCACUCAguaa u
 ||||||||   ||| |||||||||||  
 ggaccgug   cgu cgugaguuguu a
c        ugu   c           c 

>eca-mir-143 (-32.20)   [eca-miR-143:41-61]

g  c   g         g      u  -  ag 
 cc gag ugcagugcu caucuc gg uc  u
 || ||| ||||||||| |||||| || ||   
 gg CUC AUGUCACGA GUAGAG cu ag  u
-  a   G         A      U  g  gg 

>eca-mir-145 (-31.22)   [eca-miR-145:7-29]

    c  UC    U  C            uagau 
cuca gG  CAGU UU CCAGGAAUCCCU     g
|||| ||  |||| || ||||||||||||     c
gagu uc  guca aa gguccuuagggg     u
    -  uu    u  a            uagaa 

>eca-mir-146a (-27.80)   [eca-miR-146a:6-27]

    uU            C        --g  u 
agcu  GAGAACUGAAUU CAUGGGUU   ug c
||||  |||||||||||| ||||||||   ||  
ucga  uucuugacuuga guguccag   gc a
    -c            a        acu  g 

>eca-mir-218-2 (-25.40)   [eca-miR-218:1-21]

-UU         CU        gguggcacga  g 
   GUGCUUGAU  AACCAUGU          ug a
   |||||||||  ||||||||          ||  
   cacgaacug  uugguaca          gc a
cgc         uc        --------ag  a 

>eca-mir-340 (-23.90)   [eca-miR-340-5p:3-24] [eca-miR-340-3p:45-67]

          -CAA      U    g     ug 
ggUUAUAAAG    UGAGAC GAUU ucaug  u
||||||||||    |||||| |||| |||||  c
CCGAUAUUUC    ACUCUG CUag ggugu  g
          AUUG      C    -     uc 

>eca-mir-378 (-39.20)   [eca-miR-378:43-63]

   g  c              ugu      ccu 
agg cu cugacuccaggucc   guguua   c
||| || ||||||||||||||   ||||||    
ucc GA GACUGAGGUUCAGG   CAcgau   g
   G  A              --U      aaa 

>eca-mir-874 (-28.80)   [eca-miR-874:39-60]

g   c   a  ca        a   -a a 
 cgg ccc cg  ccagggua gag  g c
 ||| ||| ||  |||||||| |||  | u
 GCC GGG GC  GGUCCCGU cuu  c c
A   A   A  CC        C   cg u 

>eca-mir-9a-2 (-34.30)   [eca-miR-9a:10-32]

--     g   UC               G      ug a 
  gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
  ||||| |||  ||||||||||||||| ||||||  |  
  cucaa aau  aagccaauagaucga auacuu  g u
uc     a   ga               a      cu g 

>eca-mir-1301 (-35.50)   [eca-miR-1301:44-67]

u   g gg        -     - c      -  gu 
 gug g  gucacucu aggca c gcagca cu  g
 ||| |  |||||||| ||||| | |||||| ||  c
 cac C  UAGUGAGG UCCGU G CGUUgu gg  u
a   a UU        G     C A      a  gg 

>eca-mir-1461 (-24.50)   [eca-miR-1461:1-22]

      A       GU       u  uu 
AUCUCU CGGGUAA  GUGUGAu uc  u
|||||| |||||||  ||||||| ||   
uagaga guccguu  uacacua ag  a
      c       --       c  ug 

>eca-mir-216a (-22.70)   [eca-miR-216a:1-22]

         CU   A      -A   guu 
UAAUCUCAG  GGC ACUGUG  gau   c
|||||||||  ||| ||||||  |||    
auuaggguc  cug ugacac  cua   a
         -u   g      cc   aau 

>eca-mir-216b (-33.90)   [eca-miR-216b:14-35]

   g       gaA         A  --CAAA      g  ac 
gug cagacug   AAUCUCUGC GG      UGUGAu uc  u
||| |||||||   ||||||||| ||      |||||| ||   
uac gucugac   uuagagaug cc      acacua ag  a
   a       auc         c  auucac      a  aa 

>eca-mir-217 (-22.90)   [eca-miR-217:1-23]

UAC     C          U -   aag 
   UGCAU AGGAACUGAU G GAu   a
   ||||| |||||||||| | |||    
   acgua uccuugacua c cug   a
guu     a          c a   acu 

>eca-let-7g (-40.80)   [eca-let-7g:7-28]

  a   U        A            ugagg    -a  a    a 
cc ggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
|| ||| |||||||| ||||||||||||     ||||  || ||||  
gg ccg uuccguca cggacaugucaa     uaga  ac augg c
  a   -        c            -----    gg  -    c 

>eca-mir-128 (-40.50)   [eca-miR-128:52-72]

u ug       a          aug      ac    g gag 
 g  caguggg aggggggccg   cacugu  gaga u   u
 |  ||||||| ||||||||||   ||||||  |||| |    
 u  gucaucc UUUCUCUGGC   GUGACA  CUcu g   a
c gu       c          CAA      --    g acg 

>eca-mir-1289 (-28.00)   [eca-miR-1289:63-85]

u     u     -u          uacc    aucuaa    uu  ac 
 uaaaa gugca  uucuuggacu    ccag      ucug  ga  u
 ||||| |||||  ||||||||||    ||||      ||||  ||  a
 auUUU UACGU  AAGGACCUGA    GGUc      agac  cu  a
a     -     CU          ----    ----gg    -u  aa 

>eca-mir-135a (-25.92)   [eca-miR-135a:2-24]

          UU            uucua 
cUAUGGCUUU  AUUCCUAUGUGA     c
||||||||||  ||||||||||||     u
ggugccgagg  uagggauauacu     g
          -u            cacuc 

>eca-mir-138-2 (-31.40)   [eca-miR-138:1-23]

AG             UCA       gc a 
  CUGGUGUUGUGAA   GGCCGuu  c a
  |||||||||||||   |||||||  | u
  gaccacaacacuu   ucggcaa  g c
-g             -ca       ga a 

>eca-mir-191 (-37.90)   [eca-miR-191:7-29]

      C          C  AA       uu  -  c 
agcggg AACGGAAUCC AA  GCAGCUG  gu cu c
|||||| |||||||||| ||  |||||||  || ||  
ucgucc uugcuuuagg uu  cgucgac  ua ga a
      c          -  cg       cu  c  g 

>eca-mir-26a-2 (-33.70)   [eca-miR-26a:10-31]

   g  u   U         C          --g  ca 
gug cc cgU CAAGUAAUC AGGAUAGGCU   ug  g
||| || ||| ||||||||| ||||||||||   ||  g
cgc gg gca guucauugg ucuuauccgg   ac  u
   a  c   c         u          gua  cc 

>eca-mir-711 (-26.90)   [eca-miR-711:39-60]

    uaa         ca    g  a   gc 
acuu   gucucuuuu  gggu cc cag  a
||||   |||||||||  |||| || |||   
uGAA   CAGAGAGGG  CCCA GG guc  a
    -UG         -A    G  -   ga 

>eca-mir-885 (-49.30)   [eca-miR-885-5p:11-32] [eca-miR-885-3p:43-64]

--   c     c           A  -         cu 
  ccg gcucu UCCAUUACACU CC CUGCCUCUu  c
  ||| ||||| ||||||||||| || |||||||||   
  ggc cgagA AGGUGAUGUGG GG GACGGAgag  c
ug   a     U           -  C         ua 

>eca-mir-15a (-24.90)   [eca-miR-15a:1-22]

UA        UA          ga  u 
  GCAGCACA  AUGGUUUGUG  uu u
  ||||||||  ||||||||||  || g
  cgucgugu  uaccggacgu  aa a
uc        ua          gg  a 

>eca-mir-16-2 (-23.50)   [eca-miR-16:1-22]

         -  A        C u   gauu 
UAGCAGCAC GU AAUAUUGG G uaa    c
||||||||| || |||||||| | |||     
gucgucgug ca uuaugacc c auu    u
         u  a        u u   aaaa 

>eca-mir-17 (-22.20)   [eca-miR-17:1-23]

CA        A  G     G   -  aua 
  AAGUGCUU CA UGCAG UAG ug   u
  |||||||| || ||||| ||| ||   a
  uucacgga gu acguc auc ac   u
ug        a  g     -   u  gug 

>eca-mir-18a (-19.30)   [eca-miR-18a:1-23]

U    U   UC   U    A   -  aa u 
 AAGG GCA  UAG GCAG UAG ug  g a
 |||| |||  ||| |||| ||| ||  | g
 uucc cgu  auc cguc auc ac  u a
c    u   ga   c    -   u  ga u 

>eca-mir-19a (-36.50)   [eca-miR-19a:49-71]

    u  u                 --      ---    ag 
gcag cu cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

>eca-mir-19b (-25.52)   [eca-miR-19b:42-64]

g           -  -      uc    ugugu 
 uuaguuuugca gg uuugca  cagc     g
 ||||||||||| || ||||||  ||||     a
 AGUCAAAACGU CC AAACGU  GUcg     u
-           A  U      --    ucuug 

>eca-mir-20a (-31.00)   [eca-miR-20a:8-30]

    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAG ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uga  uucacgaguauuacguc auc au  a
    a   aa                 -   u  ug 

>eca-mir-92a (-35.10)   [eca-miR-92a:40-61]

            c   u           uu 
acagguugggau ggu gcaaugcugug  u
|||||||||||| ||| |||||||||||   
UGUCCGGCCCUG UCA CGUUAUgguau  c
            U   -           gu 

>eca-mir-10b (-24.50)   [eca-miR-10b:5-27]

     A    G     C          -ug  au 
uauaU CCCU UAGAA CGAAUUUGUG   gu  c
||||| |||| ||||| ||||||||||   ||   
auaua gggg aucuu gcuuagacac   ua  c
     a    -     a          uga  ca 

>eca-mir-128-2 (-29.70)   [eca-miR-128:44-64]

      uuc       uag      cu       u 
guugga   ggggccg   cacugu  gagaggu u
||||||   |||||||   ||||||  |||||||  
cgacuu   CUCUGGC   GUGACA  CUcuuua a
      UUU       CAA      --       c 

>eca-mir-1248 (-35.00)   [eca-miR-1248:1-27]

-UC        AUAA C   G     ---AA                u 
   CUUCUUGU    G ACU UGCUA     auugcagaaacuagga c
   ||||||||    | ||| |||||     |||||||||||||||| a
   gaagaaca    c uga acgau     uaauguuuuugguucu c
aaa        --ca a   g     cguaa                u 

>eca-mir-28 (-49.90)   [eca-miR-28-5p:14-35] [eca-miR-28-3p:54-75]

   c         A                U  ----    gcc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuu   u
||| ||||||||| |||||||||||||||| ||    ||||    
uca ggacgggAG UCCUCGAGUGUUAGAU AC    ucag   u
   c         G                C  ccuu    ucu 

>eca-mir-551b (-26.60)   [eca-miR-551b:42-62]

a          cg     - -aga    gug 
 ugaaaucaag  ugggu g    ccug   c
 ||||||||||  ||||| |    ||||    
 ACUUUGGUUC  ACCCA C    gggc   a
G          AU     G Ggaa    aag 

>eca-mir-568 (-17.70)   [eca-miR-568:1-20]

        A         ACuucc        u 
AUGUAUAA UGUAUACAC      uauauaua c
|||||||| |||||||||      ||||||||  
uacauauu auauaugug      auauauau c
        -         ------        a 

>eca-mir-1291b (-28.30)   [eca-miR-1291b:1-24]

A   -    AAUCA            ug 
 GGC CCUG     AGACCAGCAGUu  c
 ||| ||||     ||||||||||||   
 ccg ggac     uuugguugucgg  u
g   a    -gaac            ug 

>eca-mir-133b (-24.80)   [eca-miR-133b:40-61]

        ca  c  a      u  g      
uggcuggu  aa gg accaag cc ucuuc 
||||||||  || || |||||| || |||| c
AUCGACCA  UU CC UGGUUU gg agagu 
        AC  C  C      -  -      

>eca-mir-206-2 (-31.90)   [eca-miR-206:44-65]

-                     cc     -    u 
 aggccacaugcuucuuuauau  ccaua cgga u
 |||||||||||||||||||||  ||||| ||||  
 uuuGGUGUGUGAAGGAAUGUA  GGUau guuu a
c                     -A     c    c 

>eca-mir-219 (-50.00)   [eca-miR-219-5p:14-34]

    c       uU   U     A  G         a   ucu 
gggc gcggcuc  GAU GUCCA AC CAAUUCUcg guc   g
|||| |||||||  ||| ||||| || ||||||||| |||   g
cccg cgccgag  cug caggu ug guugagagc cgg   c
    c       cc   -     c  a         -   ccu 

>eca-mir-220b (-29.10)   [eca-miR-220b:1-21]

CGACC        -   -      g    a g 
     ACCGUGUC UGA CACCUu ggcg g g
     |||||||| ||| |||||| |||| | c
     uggcguag acu guggaa ucgc c a
--guc        u   u      g    a u 

>eca-mir-220b-2 (-34.40)   [eca-miR-220b:10-30]

ugu    cuCG   ---        -   -      g    a g 
   aggg    ACC   ACCGUGUC UGA CACCUu ggcg g g
   ||||    |||   |||||||| ||| |||||| |||| | c
   uccu    ugg   uggcguag acu guggaa ucgc c a
--c    --ca   guc        u   u      g    a u 

>eca-mir-30c-2 (-24.04)   [eca-miR-30c:1-23]

U       U   ACA         guggaa 
 GUAAACA CCU   CUCUCAGCu      a
 ||||||| |||   |||||||||       
 cauuugu gga   gagggucga      g
u       c   --a         aagagu 

>eca-mir-1898 (-25.90)   [eca-miR-1898:1-22]

          UC     GG  -      au 
AGGUCAAGGU  ACAGG  AU Caagaa  a
||||||||||  |||||  || ||||||   
uccaguuuca  ugucu  ua guucuu  u
          uu     aa  u      au 

>eca-mir-449a (-25.10)   [eca-miR-449a:1-22]

       GUA            uga  au 
UGGCAGU   UUGUUAGCUGGU   au  a
|||||||   ||||||||||||   ||   
aucguca   aacaaucgacua   ua  u
       acg            cgg  ag 

>eca-mir-582 (-30.54)   [eca-miR-582-5p:6-28] [eca-miR-582-3p:43-64]

-uuu    A             A     Uaaucu 
    ggUU CAGUUGUUCAACC GUUAC      a
    |||| ||||||||||||| |||||       
    CCAA GUCAACAAGUUGG CAAUg      a
aaac    -             C     uuaauc 

>eca-mir-1-2 (-30.80)   [eca-miR-1:49-70]

g    gg a                gc     ---   a 
 cuug  a acauacuucuuuauau  ccaua   ugg c
 ||||  | ||||||||||||||||  |||||   ||| c
 ggac  U UGUAUGAAGAAAUGUA  GGUau   auc u
-    uu A                -A     cga   g 

>eca-mir-103 (-28.40)   [eca-miR-103:48-70]

uc  g      --   u  u           ----    ua 
  gu cuuuca  gcu cu uacagugcugc    cuug  g
  || ||||||  ||| || |||||||||||    ||||  c
  ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
ac  a      AU   -  C           Aacu    uu 

>eca-mir-1255b (-16.90)   [eca-miR-1255b:3-24]

--     -  AAG  AA AA          uu 
  uaCGG AU   CA  G  AGUGGUUucu  a
  ||||| ||   ||  |  ||||||||||   
  guguc ua   gu  u  ucaucaaagg  a
aa     g  gaa  gg cc          ua 

>eca-mir-133a-2 (-27.60)   [eca-miR-133a:43-64]

    a       aa  u  a        aacug 
gcua agcuggu  aa gg accaaauc     u
|||| |||||||  || || ||||||||      
cgau UCGACCA  UU CC UGGUUUag     u
    G       AC  C  C        guaac 

>eca-mir-296 (-40.50)   [eca-miR-296:47-68]

a   cu    c        c  -         g   ugu 
 gga  cuuc ggagggcc cc cccaauccu uug   u
 |||  |||| |||||||| || ||||||||| |||   u
 ucu  gaag CCUUUCGG GG GGGUUGGGA Gac   g
-   cg    u        A  U         -   uua 

>eca-mir-499 (-56.92)   [eca-miR-499-5p:34-54] [eca-miR-499-3p:71-92]

u uu      ccu   c c    --    c   u  UA        A          acucc 
 g  cugucc   gca c uggg  cggg ggc gU  AGACUUGC GUGAUGUUUa     u
 |  ||||||   ||| | ||||  |||| ||| ||  |||||||| ||||||||||     c
 u  gacggg   cgu g accc  gccc ucg CG  UCUGAACG CACUACAAgu     u
- gg      -uc   c u    cu    u   U  UG        A          gcacc 

>eca-let-7d (-42.52)   [eca-let-7d:8-29]

       A              C      -------uua      g 
ccuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
||||||| |||||||||||||| ||||||          |||||| a
ggauucu uuccgucguccagc uaucaa          cccguu u
       -              a      uagaggaaca      u 

>eca-let-7f (-42.60)   [eca-let-7f:7-28]

    a UG                      ---------       u 
ucgg g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| |  ||||||||||||||||||||||         ||||||| a
aguc c  uccguuaucuaacauaucaaua         ucccauu u
    - cu                      gaggacuug       u 

>eca-mir-101-2 (-28.40)   [eca-miR-101:44-64]

--  -                    c a    guaua 
  cc uuuuucgguuaucaugguac g ugcu     u
  || |||||||||||||||||||| | ||||      
  gg aagAAGUCAAUAGUGUCAUG C AUgg     c
gu  u                    A -    aaagu 

>eca-mir-204b-2 (-33.16)   [eca-miR-204b:6-27]

u    U          A     U    gagaau 
 ggac UCCCUUUGUC UCCUA GCCU      a
 |||| |||||||||| ||||| ||||      u
 cuug agggaaacgg agggu cgga      a
a    c          a     -    ggaagu 

>eca-mir-23b (-28.94)   [eca-miR-23b:46-66]

  c   u   --          -  c      gugacu 
gg ugc ugg  guuccuggca ug ugauuu      u
|| ||| |||  |||||||||| || ||||||       
cc acg aCC  UAGGGACCGU AC ACUAaa      a
  a   c   AU          U  -      auuaga 

>eca-mir-24-2 (-26.32)   [eca-miR-24:44-65]

    g  g   a         ua     ucuca 
cucc gu ccu cugagcuga  ucagu     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacau 

>eca-mir-27b (-40.20)   [eca-miR-27b:49-69]

                  auug        ugac     
aggugcagagcuuagcug    gugaacag    uggu 
||||||||||||||||||    ||||||||    ||| u
uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
                  --GA        --uc     

>eca-mir-31 (-28.40)   [eca-miR-31:8-28]

ggaga   -     G   C         -U   gaa 
     ggA GGCAA AUG UGGCAUAGC  guu   c
     ||| ||||| ||| |||||||||  |||    
     ucu ccguu uac accguaucg  caa   u
-----   a     a   a         uc   gag 

>eca-mir-491 (-43.60)   [eca-miR-491-5p:16-37] [eca-miR-491-3p:50-71]

 ug      cu      U      CC   C          a 
u  acuuag  ggguAG GGGGAA  CUU CAUGAGGagu g
|  ||||||  |||||| ||||||  ||| |||||||||| a
g  uggguc  ucCAUC UCCCUU  GAA GUAUUCcuca a
 gu      ag      U      -A   C          c 

>eca-mir-544b (-24.10)   [eca-miR-544b:55-76]

ggcau          -c     --     -a    --g  g 
     cuuguuaaaa  gcaga  cuugg  uuca   ca g
     ||||||||||  |||||  |||||  ||||   ||  
     GAACAAUUUU  CGUCU  gaacc  gagu   gu u
--CUU          UA     UA     cg    agg  c 

>eca-mir-7-3 (-32.20)   [eca-miR-7:16-38]

uggucua  u        A     A       U      --ug   a 
       gu cugugUGG AGACU GUGAUUU GUUGUu    uag u
       || |||||||| ||||| ||||||| ||||||    |||  
       ca gguauacc ucuga cacuaaa caacag    auc a
----gga  c        g     -       -      cuaa   a 

>eca-mir-872 (-29.99)   [eca-miR-872:11-31]

--u   u     A        U  -U        accucgu 
   acu guuag AGGUUACU GU  AGUUCAGG       u
   ||| ||||| |||||||| ||  ||||||||        
   ugg caauc uccgauga cg  ucaagucc       a
cuc   u     c        -  uu        guucuuu 

>eca-mir-873 (-31.10)   [eca-miR-873:11-31]

--   u ca   G A      UG G        a  ga 
  gug g  uuu C GGAACU  U AGUCUCCU uu  a
  ||| |  ||| | ||||||  | |||||||| ||  a
  cac c  aag g ccuuga  a ucagagga aa  a
aa   c ac   g c      gu g        c  gu 

>eca-mir-876 (-42.70)   [eca-miR-876-5p:11-32] [eca-miR-876-3p:47-71]

u    ug         U                aucuga  u 
 gaag  cugUGGAUU CUUUGUGAAUCACCAu      gc a
 ||||  ||||||||| ||||||||||||||||      ||  
 cuuc  gauACUUAA GAAACAUUUGGUGGUG      Ug a
a    gu         U                -----G  u 

>eca-mir-1185 (-33.10)   [eca-miR-1185:15-35]

u       u    -     GA A              acu   u 
 uugguac ugaa gAGAG  U CCCUUUGUAUGUUc   uca u
 ||||||| |||| |||||  | ||||||||||||||   |||  
 aacuaug guuu uucuc  a gggggacauauaag   agu a
a       c    a     ag -              --c   a 

>eca-mir-1193 (-54.10)   [eca-miR-1193:80-100]

ugaagggacuguagugccauccacucugca    a     gg       -    c      g    cu   u 
                              gggu gcuga  ggauggu agac ggugac ugca  uca u
                              |||| |||||  ||||||| |||| |||||| ||||  |||  
                              ccca cgacu  cCUAUCA UUUG CCACUG AUgu  agu u
--------------------gucuaccuga    -     -a       G    C      G    --   a 

>eca-mir-1197 (-36.80)   [eca-miR-1197:80-100]

gggagagaggcugggucagcgucacuuca       u  a  u c   u       c  - g    - uuu 
                             ugguauu ga ga g ggu gaccaug ug u uacg c   a
                             ||||||| || || | ||| ||||||| || | |||| |   u
                             acuauaa cu cU C UCA CUGGUAC AC G AUgc g   u
--------------------ccgcucuac       -  c  - U   U       -  A G    a uau 

>eca-mir-127 (-34.90)   [eca-miR-127:43-64]

----      ugcug         g  c      --  a 
    ccagcc     aagcucaga gg ucugau  uc g
    ||||||     ||||||||| || ||||||  || a
    ggUCGG     UUCGAGUCU CC AGGCUa  ag a
ggcu      -----         G  U      cu  a 

>eca-mir-134 (-34.80)   [eca-miR-134:7-28]

     gU        U  -A   G    Gca   a 
agggu  GUGACUGG UG  CCA AGGG   agc c
|||||  |||||||| ||  ||| ||||   ||| u
uccca  cacugauc ac  ggu uccc   uug c
     ac        c  cg   g    -ac   u 

>eca-mir-136 (-28.40)   [eca-miR-136:5-26]

        C     UUU          uuc 
gaggACUC AUUUG   UGAUGAUGGa   u
|||||||| |||||   ||||||||||   u
cuucugag uaaac   gcuacuaccu   a
        -     ucu          cgc 

>eca-mir-154 (-19.60)   [eca-miR-154:4-25]

--        UAU      UGCC    - uuu 
  agaUAGGU   CCGUGU    UUCG c   a
  ||||||||   ||||||    |||| |   u
  uuuaucca   ggcaca    aagc g   c
uu        cuu      uacu    a ugu 

>eca-mir-299 (-40.50)   [eca-miR-299:39-60]

     a                      uu 
aagaa ugguuuaccgucccacauacau  u
||||| ||||||||||||||||||||||  g
uucUU GCCAAAUGGUAGGGUGUAUgua  a
     C                      ug 

>eca-mir-323 (-37.70)   [eca-miR-323-5p:16-37] [eca-miR-323-3p:51-71]

---uu      u g        G U     GCGC  U    uua 
     gguacu g agagAGGU G CCGUG    GU CGCu   u
     |||||| | |||||||| | |||||    || ||||    
     cuauga c uuUCUCCA C GGCAC    CA gcgg   u
cuaau      - g        G U     AUUA  C    uau 

>eca-mir-329 (-36.10)   [eca-miR-329:62-83]

guguuaaucag      cu           uu      uuc      uuuaa 
           ugguac  gaagagagguu  cugggu   uguuuc     u
           ||||||  |||||||||||  ||||||   ||||||      
           acuaug  cuUUUCUCCAA  GAUCCA   ACAAag     g
------ccuag      ac           UU      --C      uagaa 

>eca-mir-337 (-39.62)   [eca-miR-337-5p:23-43] [eca-miR-337-3p:61-82]

guagucaguag    -        -  C   U  A  C        augcg 
           gugg ggggugaG AA GGC UC UA AGGAGCUg     c
           |||| |||||||| || ||| || || ||||||||     a
           cacu ccccaCUC UU CCG AG GU UCCUCgac     g
-----------    u        C  U   U  A  A        ccauu 

>eca-mir-342 (-50.10)   [eca-miR-342-5p:19-40] [eca-miR-342-3p:61-83]

gaaccu    u        G      --UA      AUUGA      ugg a 
      gggc caaggugA GGGUGC    UCUGUG     Gggaca   c a
      |||| |||||||| ||||||    ||||||     ||||||   | a
      cccg guuccacU CCCACG    AGACAC     CUCUgu   g u
-auccg    -        G      CUAA      ----A      uaa a 

>eca-mir-345 (-48.20)   [eca-miR-345-5p:17-38] [eca-miR-345-3p:55-76]

--------acc   c         G U          C   U     ugau 
           caa cccaggucu C GACUCCUAGU CAG GCUCg    g
           ||| ||||||||| | |||||||||| ||| |||||     
           guu gggucCGGA G CUGGGGAUCA GUC cgggu    g
gaccgcuauaa   u         G U          A   C     gauc 

>eca-mir-369 (-28.40)   [eca-miR-369-5p:9-30] [eca-miR-369-3p:44-64]

u   ag               CA      Cuuua 
 uga  ggAGAUCGACCGUGU  UAUUCG     u
 |||  |||||||||||||||  ||||||      
 gcu  UUUCUAGUUGGUACA  AUAAgc     u
g   cu               UA      uucag 

>eca-mir-370 (-36.60)   [eca-miR-370:48-69]

agac   g         ca gu   u    u   a  g 
    aga aggccaggu  c  cuc gcag uac ca c
    ||| |||||||||  |  ||| |||| ||| || u
    ucu ucUGGUCCA  G  GGG CGUC Gug gu c
----   g         AG UG   U    C   a  a 

>eca-mir-376a (-16.61)   [eca-miR-376a:44-64]

u    g  a    c    u      guacaaua 
 aaaa gu gauu uccu cuauga        u
 |||| || |||| |||| ||||||        u
 uuuU CA CUAA AGGA GAUACU        u
c    G  C    A    -      Aauuagua 

>eca-mir-376b (-27.10)   [eca-miR-376b:51-71]

u      u    g      a     u     u   - guga 
 gguauu aaaa guggau uuccu cuaug uua c    u
 |||||| |||| |||||| ||||| ||||| ||| |     
 cuauga uuuU UACCUA AAGGA GAUAC Aau g    u
a      c    G      A     -     U   a auac 

>eca-mir-376c (-24.02)   [eca-miR-376c:43-63]

    g     ua     u         uguug 
aaaa gugga  uuccu cuauguuua     u
|||| |||||  ||||| |||||||||     u
uuuU CACCU  AAGGA GAUACAAau     u
    G     UA     -         uggua 

>eca-mir-377 (-27.80)   [eca-miR-377:45-66]

uu              c   -    a    - uuu 
  gagcagagguugcc uug guga uucg c   a
  |||||||||||||| ||| |||| |||| |   u
  uuUGUUUUCAACGG AAC CACU Aagu g   u
-g              A   A    -    u uau 

>eca-mir-379 (-26.60)   [eca-miR-379:6-26]

    a    A       GA       - uuuau 
agag UGGU GACUAUG  ACGUAGG c     g
|||| |||| |||||||  ||||||| |      
ucuc auca cugguac  uguaucc g     a
    a    c       aa       a uuuuu 

>eca-mir-380 (-27.40)   [eca-miR-380:40-61]

      guu       ga       -  gu 
aagacg   gaccaua  gcaugcg cu  c
||||||   |||||||  ||||||| ||  u
UUCUGC   CUGGUAU  UGUAUgc gg  c
      -AC       AA       u  au 

>eca-mir-381 (-36.10)   [eca-miR-381:49-70]

      a  c   g        u        --g   u 
uacuua ag gag uugcccuu guauauuc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   cag u
      G  U   G        -        aua   u 

>eca-mir-382 (-28.50)   [eca-miR-382:11-32]

    u       -A           UG      - uuu 
uacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuuuuuu  caacaggcacu  cuaagc g   u
    -       ca           ua      a uau 

>eca-mir-409 (-38.30)   [eca-miR-409-5p:15-37] [eca-miR-409-3p:47-68]

u     u  gg   A    AC         -    - AUc 
 gguac cg  gag GGUU  CCGAGCAAC UUUG C   u
 ||||| ||  ||| ||||  ||||||||| |||| |    
 cuaug gc  uUC CCAA  GGCUCGUUG AAGc g   g
a     -  uu   C    GU         U    a cag 

>eca-mir-410 (-32.10)   [eca-miR-410:43-63]

------      g    ug      a  a     - uuu 
      ugagga aggu  ucugug ug guucg c   a
      |||||| ||||  |||||| || ||||| |   u
      acuucU UCCG  AGACAC AU UAAgc g   u
accaug      G    GU      A  A     a uaa 

>eca-mir-411 (-30.00)   [eca-miR-411:16-36]

u      ug   a a    A      A A       - uuu 
 gguacu  gag g UAGU GACCGU U GCGUACG c   a
 ||||||  ||| | |||| |||||| | ||||||| |   u
 cuauga  cuc c auca cuggca a uguaugc g   c
a      --   c a    c      c a       a ugu 

>eca-mir-412 (-35.20)   [eca-miR-412:52-71]

      a   g  a    c      u   aa    -    u 
ggguac gga gg uggu gaccag ugg  agua auug u
|||||| ||| || |||| |||||| |||  |||| ||||  
cccaug ccu CC AUCA CUGGUC ACU  Ucau uaau u
      -   G  G    C      C   --    g    c 

>eca-mir-431 (-43.70)   [eca-miR-431:13-35]

---    c       U          C  U A     ----   aca 
   cguc ugcgagg GUCUUGCAGG CG C UGCAG    Gcc   c
   |||| ||||||| |||||||||| || | |||||    |||    
   gcag acgcucu cgggacguuc gc g acguu    ugg   u
aca    a       u          u  u g     gcaa   cag 

>eca-mir-432 (-34.10)   [eca-miR-432:18-40]

ugcgugacuccu     U U     UA       G     a   uu   uu 
            ccagg C UGGAG  GGUCAUU GGUGG ucc  uau  c
            ||||| | |||||  ||||||| ||||| |||  |||   
            gguuc g accuc  ucgguag ucacc ggg  gua  c
------------     u u     -c       g     -   -u   uc 

>eca-mir-433 (-45.70)   [eca-miR-433:67-88]

------------------------ugcccgg      gua   u           u   --------  g     cu 
                               ggagaa   cgg gagccugucau auu        ca agagg  a
                               ||||||   ||| ||||||||||| |||        || |||||   
                               ccucuU   GCU CUCGGGUAGUA UAg        gu ucucc  g
cccgacggaaguaccacaccacggcgaugga      GUG   C           C   gaagaauu  g     ua 

>eca-mir-485 (-34.50)   [eca-miR-485-5p:9-30] [eca-miR-485-3p:46-67]

   u         CU       -    A    auuc 
acu gaagAGAGG  GGCCGUG AUGA UUCg    a
||| |||||||||  ||||||| |||| ||||    u
uga uuUCUCUCC  UCGGCAC UACU Gagc    c
   u         UC       A    -    gaaa 

>eca-mir-487a (-30.90)   [eca-miR-487a:49-70]

      u     g   uua      c    -    cu  a 
gguacu gaaga ugg   ucccug ugug uucg  gu u
|||||| ||||| |||   |||||| |||| ||||  ||  
cuauga uuuUU ACC   AGGGAC AUAC AAgc  ua u
      c     G   UAC      -    U    ag  u 

>eca-mir-487b (-34.80)   [eca-miR-487b:51-72]

u       ug        uuau      c u     uuuua 
 ugguacu  gagagugg    cccugu c guucg     a
 |||||||  ||||||||    |||||| | |||||      
 acuauga  uuUUCACC    GGGACA G UAAgc     u
a       cu        UACU      U C     ugcau 

>eca-mir-493b (-45.70)   [eca-miR-493b:57-78]

     cuc        u        u           cauuc  u 
cuggc   cagggccu guacaugg aggcuuucauu     gu u
|||||   |||||||| |||||||| |||||||||||     ||  
gaccg   gucucGGA CGUGUGCC UCUGGAAGUgg     ca g
     --u        C        U           -cuua  c 

>eca-mir-494 (-34.10)   [eca-miR-494:48-69]

      c            gu      -   c   -  uuu 
gauacu gaaggagagguu  ccgugu ugu uuc uc   a
|||||| ||||||||||||  |||||| ||| ||| ||   u
cuauga uuuuuuCUCCAA  GGCACA ACA AAG ag   u
      -            AG      U   -   U  uau 

>eca-mir-495 (-31.00)   [eca-miR-495:50-71]

u   c  u          u  -       au     - uug 
 ggu cc gaaaagaagu gc ccauguu  uuucg c   a
 ||| || |||||||||| || |||||||  ||||| |   u
 cua gg uuuUUCUUCA CG GGUACAA  AAAgc g   a
a   u  c          -  U       AC     a ugu 

>eca-mir-496 (-37.60)   [eca-miR-496:57-78]

a   ---u  --cca      c   u        u     gu         uua 
 ccc    ag     gguacu gaa ggagguug ccaug  guguucauu   u
 |||    ||     |||||| ||| |||||||| |||||  |||||||||    
 ggg    uc     ucauga cuu cCUCUAAC GGUAC  UAUGAGUag   u
-   uucu  uuaaa      -   u        C     AU         uau 

>eca-mir-539 (-30.90)   [eca-miR-539:9-30]

     ug          A      C    ----U    uu 
auacu  aGGAGAAAUU UCCUUG UGUG     ucgc  u
|||||  |||||||||| |||||| ||||     ||||  a
uauga  uuuucuuuaa aggaac auac     agug  u
     gu          c      -    uaagu    uu 

>eca-mir-541 (-34.50)   [eca-miR-541:54-75]

-   -u      aa        c    g uc    u   gaguu 
 acg  caggga  ggauucug uguc g  ccac cca     c
 |||  ||||||  |||||||| |||| |  |||| |||      
 ugu  gucUCU  CCUAAGAC ACGG U  GGUg ggu     g
g   uc      GA        -    G --    -   aaaac 

>eca-mir-543 (-24.70)   [eca-miR-543:45-66]

  u          u  -     ---u    u    uu 
cu aaggagaagu gc ccgug    uuuu ucgc  u
|| |||||||||| || |||||    |||| ||||  a
ga uuuUUCUUCA CG GGCGC    AAAg agug  u
  c          -  U     UUAC    c    uu 

>eca-mir-544-2 (-35.30)   [eca-miR-544:55-76]

auuuu      cua    u           -     u   -ga  c 
     caucac   ggga cuuguuaaaag gcaga ucu   uu a
     ||||||   |||| ||||||||||| ||||| |||   ||  
     guagug   ccCU GAACGAUUUUU CGUCU Aga   ag g
-aauc      -aa    U           A     U   acc  g 

>eca-mir-655 (-35.20)   [eca-miR-655:61-82]

aacu   caag      ug           u      ua      cuuca 
    guu    gauauu  aggagagguua ccgugu  uguucg     u
    |||    ||||||  ||||||||||| ||||||  ||||||      
    cag    cuauaa  uUUUCUCCAAU GGUACA  AUAagu     u
--cu   ---a      gu           U      UA      acuac 

>eca-mir-656 (-23.20)   [eca-miR-656:43-63]

---------- u    u      c     ag       cuu  u 
          c gaaa agguug cugug  guguuca   uc a
          | |||| |||||| |||||  |||||||   || u
          g cuuU UCCAAC GACAU  UAUAAgu   ag a
cuaagcuaag c    C      U     AU       ---  c 

>eca-mir-758 (-28.80)   [eca-miR-758:52-73]

gcc       a    --a    u      aga   c   - uuu 
   uggguac ugag   uggu gaccag   gca acg c   a
   ||||||| ||||   |||| ||||||   ||| ||| |   u
   aucuaug acuc   AUCA CUGGUC   UGU Ugc g   u
--a       -    CCA    C      CAG   U   c ugu 

>eca-mir-770 (-62.80)   [eca-miR-770-5p:20-41]

---  --c     u  gu                GUC      -      gc 
   gc   gcccu cc  gccuccAGCACCACGU   UGGGCC AUGuga  a
   ||   ||||| ||  ||||||||||||||||   |||||| ||||||   
   cg   cggga gg  cgggggucguggugua   gcccgg uacacu  a
ucu  ucu     c  --                ---      g      gg 

>eca-mir-889 (-27.40)   [eca-miR-889:49-69]

-     u   g     c      uagua     u    a 
 gugcu aaa aaugg ugucug     ugguc ccau u
 ||||| ||| ||||| ||||||     ||||| ||||  
 uauga uuU UUACC ACAGGC     AUUag ggua u
c     u   G     A      -UAUA     u    c 

>eca-mir-126 (-34.40)   [eca-miR-126-5p:9-29] [eca-miR-126-3p:46-67]

      - a           U       C cug   c 
cgacgg g CAUUAUUACUU UGGUACG G   uga a
|||||| | ||||||||||| ||||||| |   |||  
gcugcc C GUAAUAAUGAG GCCAUGC c   acu c
      G -           U       U -aa   u 

>eca-mir-181a (-57.30)   [eca-miR-181a:39-61]

aagggcugccaggacccagccuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguucc ugu aguugc  cagccac caaa    u
------------------------a             a   c      --       -    aaag 

>eca-mir-181b (-35.00)   [eca-miR-181b:16-38]

cuga   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUu ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     guaaguaac  uagucacucaa cu  g
acaa   a     caaac         --           -  aa 

>eca-mir-199b (-28.30)   [eca-miR-199b-5p:6-28] [eca-miR-199b-3p:45-66]

     C       U       U    U  ----  a 
gucua CCAGUGU UAGACUA CUGU Ca    gg c
||||| ||||||| ||||||| |||| ||    ||  
cggAU GGUUACA GUCUGAU GACA gu    cc u
     U       C       -    u  uaaa  c 

>eca-mir-219-2 (-49.90)   [eca-miR-219-5p:19-39]

a   a       c     U   U     AA           uac a  c 
 cuc ggggcuu gccac GAU GUCCA  CGCAAUUCUug   g gu u
 ||| ||||||| ||||| ||| |||||  |||||||||||   | || g
 ggg ccucgag cggug cua caggu  guguuaagagc   c cg c
-   -       u     u   -     cg           caa -  g 

>eca-mir-32 (-33.30)   [eca-miR-32:6-27]

        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCAc g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuuuuaua  gugug ugauuuaacgug c  cg c
        gu     -            a uc  g 

>eca-let-7c (-24.60)   [eca-let-7c:4-25]

-  uU   G   U             ua  g ua a 
 gg  GAG UAG AGGUUGUAUGGUU  ga u  c c
 ||  ||| ||| |||||||||||||  || |  | c
 cc  uuc auc uccaacaugucaa  uu a  g c
u  -u   g   u             --  g gg u 

>eca-mir-125b-2 (-33.30)   [eca-miR-125b-5p:6-27]

-     UC  UG   C   A        -gg   u 
 ccuag  CC  AGA CCU ACUUGUGA   uau u
 |||||  ||  ||| ||| ||||||||   |||  
 ggauc  gg  ucu gga ugaacacu   aug u
c     ca  gu   c   c        aca   g 

>eca-mir-155 (-30.50)   [eca-miR-155:4-26]

             U    A        uuua c 
cugUUAAUGCUAA CGUG UAGGGGUu    c u
||||||||||||| |||| ||||||||    |  
gacaauuacgauu guac auccucag    g c
             -    -        -uca g 

>eca-mir-802 (-34.20)   [eca-miR-802:17-39]

----uu      u     auC   A          A       -  cc 
      cuauua uugca   AGU ACAAAGAUUC UCCUUGU gu  a
      |||||| |||||   ||| |||||||||| ||||||| ||  u
      gauaau aaugu   uca uguuucuaag aggaaca cg  c
cgcguc      u     gau   c          -       a  aa 

>eca-mir-99a-2 (-39.30)   [eca-miR-99a:13-34]

cc          A         UC   U       u aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUGg g   u
  |||||||||| |||||||||  ||| ||||||| |    
  gugacugugu uggguaucu  gcu gaacacu c   g
gu          c         uc   c       - cag 

>eca-mir-383 (-27.30)   [eca-miR-383:7-28]

   -c  A      AA    A        uug   gga 
cuc  uc GAUCAG  GGUG UUGUGGCU   ggu   u
|||  || ||||||  |||| ||||||||   |||    
gag  ag cugguc  ucac gacaccga   cua   a
   aa  a      cg    -        ---   auu 

>eca-mir-486 (-49.70)   [eca-miR-486-5p:4-25] [eca-miR-486-3p:46-66]

gg                      ----   c uu 
  aUCCUGUACUGAGCUGCCCCGA    Ggc c  c
  ||||||||||||||||||||||    ||| |   
  UAGGACAUGACUCGACGGGGCu    ccg g  a
--                      cgac   u uc 

>eca-let-7a-2 (-34.70)   [eca-let-7a:4-25]

   U   GU               Uuggggcuc      g 
ggg GAG  AGUAGGUUGUAUAGU         ugcccu c
||| |||  |||||||||||||||         |||||| u
ucc uuc  ucaucuaacauauca         augggg a
   u   ug               ---------      u 

>eca-mir-135a-2 (-35.10)   [eca-miR-135a:23-45]

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 

>eca-mir-331 (-42.32)   [eca-miR-331:61-81]

gaauuugguuuu         u        u    u       au ccaga 
            guuuggguu guucuagg augg cccaggg  c     u
            ||||||||| |||||||| |||| |||||||  |     c
            caaauccaa cAAGAUCC UAUC GGGUCCC  g     a
------------         c        -    C       CG accaa 

>eca-mir-33a (-36.50)   [eca-miR-33a:6-26]

              A UU          uucu  c 
cugugGUGCAUUGU G  GCAUUGCAug    gg g
|||||||||||||| |  ||||||||||    || g
gacacuacgugaca c  uguaacguac    cc u
              c uu          ----  a 

>eca-mir-181a-2 (-39.60)   [eca-miR-181a:24-46]

-u   ucu      u   ----u   u A   U      CU       A    g  au 
  gag   gagggu gcu     cag g ACA UCAACG  GUCGGUG GUuu ga  u
  |||   |||||| |||     ||| | ||| ||||||  ||||||| |||| ||  a
  cuc   cuccua cga     guc c ugu aguugc  cagcuac caaa cu  a
ac   -cu      c   ucggu   c g   u      --       -    a  aa 

>eca-mir-194-2 (-40.60)   [eca-miR-194:15-36]

a   - gu       U         A      G    --c     
 ugg g  caucaag GUAACAGCA CUCCAU UGGA   uggg 
 ||| |  ||||||| ||||||||| |||||| ||||   ||| u
 acc u  guaguuu cauugucgu gaggug accu   acca 
a   a ug       u         a      -    uua     

>eca-mir-215 (-37.00)   [eca-miR-215:27-47]

aucauua  aaau           a A  A     -   U          uaug 
       ag    gguauacagga a UG CCUAU GAA UGACAGACaa    a
       ||    ||||||||||| | || ||||| ||| ||||||||||    c
       uc    cuauaugucuu u ac ggaug cuu acugucuguu    u
aacuuca  gucu           a a  c     u   u          ugaa 

>eca-mir-350 (-32.82)   [eca-miR-350:61-84]

aaacccuuug      u         -   cac c      -     gugag 
          cuccua aagaguaaa gug   g gcuuug ggaca     g
          |||||| ||||||||| |||   | |||||| |||||     a
          gaggau uucuCAUUU CAC   C CGAAAC CUUgu     a
--------ga      -         U   AUA C      A     aguag 

>eca-mir-664 (-23.10)   [eca-miR-664:49-72]

gaacauugaaac         aaac   u        aaa 
            aggcuagga    uga uggauaga   u
            |||||||||    ||| ||||||||   a
            UCCGAUCCU    AUU ACUUAUcu   u
-------aaACA         --CU   U        cau 

>eca-mir-105 (-40.80)   [eca-miR-105:13-35]

ugu         U  A          UC        gccg 
   gcaucguag CA AUGCUCAGAC  CUGUGGUg    u
   ||||||||| || ||||||||||  ||||||||     
   ugugguauc gu uacgaguuug  ggcaccac    u
auc         -  g          ua        guac 

>eca-mir-106a (-27.10)   [eca-miR-106a:13-35]

  u   cc    -CA        A  G     G   c  u 
cc ugg  augu   AAGUGCUU CA UGCAG UAG uu c
|| |||  ||||   |||||||| || ||||| ||| || u
gg acc  uaca   uucacgaa gu acguc auc ag g
  u   au    uuc        c  a     -   u  a 

>eca-mir-1264 (-19.16)   [eca-miR-1264:42-64]

--------    c     -    u        aaagaa 
        aggu cucaa uaag auuuguug      u
        |||| ||||| |||| ||||||||      a
        UCCA GAGUU AUUC UGAACaac      a
guguaUUG    C     U    -        caagua 

>eca-mir-1298 (-50.90)   [eca-miR-1298:19-40]

---aag         u         U    C             ------       cc 
      augaggagu aagagUUCA UCGG UGUCCAGAUGUAu      ccaagua  c
      ||||||||| ||||||||| |||| |||||||||||||      |||||||   
      uacuuuucg uuuucaagu aguc acgggucuacaua      gguuuau  a
acucag         c         u    a             aauaac       ug 

>eca-mir-1468 (-39.00)   [eca-miR-1468:13-33]

        gu  C         C           ---  -u  u 
ggugggug  uu UCCGUUUGC UGUUUUGCUGa   ug  uc u
||||||||  || ||||||||| |||||||||||   ||  ||  
cuaccuac  aa agguaaacg auaaaacgacu   ac  ag u
        uu  a         a           cuu  uu  u 

>eca-mir-188 (-30.30)   [eca-miR-188-5p:6-26] [eca-miR-188-3p:45-65]

   ca  UC         GU      -ugag u 
ucu  CA  CCUUGCAUG  GGAGGG     c u
|||  ||  |||||||||  ||||||     | u
agg  GU  GGGACGUAC  CCUCcc     g c
   AC  UU         AC      caaaa u 

>eca-mir-18b (-17.60)   [eca-miR-18b:1-23]

UA   U    C   U     UA  --g     
  AGG GCAU UAG GCAGU  Gu   aagc 
  ||| |||| ||| |||||  ||   ||| a
  ucc cgua auc cguca  ua   uucg 
--   c    a   c     uc  aga     

>eca-mir-1912 (-30.00)   [eca-miR-1912:46-67]

---     gg    g u         gg   u    auuu 
   cucua  augu c cauugcaug  cug guau    u
   |||||  |||| | |||||||||  ||| ||||    u
   gagau  uacA G GUGACGUGC  GAC CAUa    a
uua     aa    A U         GA   C    acuu 

>eca-mir-19b-2 (-37.50)   [eca-miR-19b:62-84]

acacugcuac                 -  -      uuu    g      u 
          uuacgauuaguuuugca gg uuugca   cagc uauaua g
          ||||||||||||||||| || ||||||   |||| ||||||  
          aguguuAGUCAAAACGU CC AAACGU   GUcg guauau u
----uguaau                 A  U      ---    -      a 

>eca-mir-20b (-28.10)   [eca-miR-20b:6-28]

     -CA           G     G   uuuu gc 
aguac   AAGUGCUCAUA UGCAG UAG    g  a
|||||   ||||||||||| ||||| |||    |   
ucaug   uucacgggugu auguc auc    c  u
     acc           g     -   ---u au 

>eca-mir-221 (-44.00)   [eca-miR-221:65-87]

-----ccaaca       cugg   a    -  ug   u         auuu    -   u 
           uccaggu    ggc ugaa cc  gca acaauguag    cugu guu c
           |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
           aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
cucuuguacaa       ----   g    U  GU   C         ----    a   g 

>eca-mir-222 (-49.00)   [eca-miR-222:69-89]

gcu      aagugu    a  c   au              -     auc   ucuu 
   gcugga      aggu cc uca  ggcucaguagccag uguag   cug    u
   ||||||      |||| || |||  |||||||||||||| |||||   |||    u
   cgaucu      ucua gg agu  cUGGGUCAUCGGUC ACAUC   gac    g
--u      ------    c  u   cu              U     GAc   uaau 

>eca-mir-223 (-43.30)   [eca-miR-223:69-90]

gcccagccuccu   -     a    cc u              gaguug       cau 
            gca gugcc cgcu  g guauuugacaagcu      gacacuc   g
            ||| ||||| ||||  | ||||||||||||||      |||||||   u
            cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
------------   a     c    AC C              ------       aug 

>eca-mir-224 (-36.90)   [eca-miR-224:8-28]

       CA         U   U      a u   ug  u 
gggcuuu  AGUCACUAG GGU CCGUUu g aga  gu g
|||||||  ||||||||| ||| |||||| | |||  || u
cccgaaa  ucagugauc ccg gguaaa c uuu  ua g
       ca         -   u      a -   gu  c 

>eca-mir-361 (-30.42)   [eca-miR-361-5p:6-27] [eca-miR-361-3p:44-66]

     UU         --U  A    U   gauaa 
ggagc  AUCAGAAUC   CC GGGG ACu     u
|||||  |||||||||   || |||| |||     u
cuucg  UAGUCUUAG   GG CCCC Uga     u
     UU         UGC  A    C   aaaau 

>eca-mir-362 (-29.80)   [eca-miR-362-5p:6-29] [eca-miR-362-3p:43-64]

ucuc           ACC        AG   - au 
    gAAUCCUUGGA   UAGGUGUG  Ugc c  u
    |||||||||||   ||||||||  ||| |   
    CUUAGGAACUU   AUCCACAC  Acg g  u
-aaA           ---        -A   u ac 

>eca-mir-363 (-25.00)   [eca-miR-363:50-71]

u   gu         ca  a         --ga   gu 
 guu  cggguggau  cg ugcaauuuu    uua  a
 |||  |||||||||  || |||||||||    |||   
 caa  GUCUACCUA  GC ACGUUAAaa    gau  u
c   AU         UG  -         agag   aa 

>eca-mir-374a (-41.80)   [eca-miR-374a:12-33]

     c   c                        u 
uacau ggc aUUAUAAUACAACCUGAUAAGUGu a
||||| ||| ||||||||||||||||||||||||  
augug cug uaauguuauguuggacuauucacg c
     u   u                        a 

>eca-mir-374b (-34.80)   [eca-miR-374b:11-32]

--  u    ug AU             C       c 
  ac cgga  g  AUAAUACAACCUG UAAGUGu c
  || ||||  |  ||||||||||||| |||||||  
  ug gccu  u  uauuauguuggac auucacg u
uc  u    gu ac             u       a 

>eca-mir-384 (-29.40)   [eca-miR-384:57-76]

u    aau    a     a       c     c    -ug    a 
 guua   cagg guugu aacaauu cuagg aaug   uaua u
 ||||   |||| ||||| ||||||| ||||| ||||   |||| g
 caau   gucc uaACA UUGUUAA GAUCC UUAc   augu u
a    ---    g     C       A     -    uga    u 

>eca-mir-421 (-33.90)   [eca-miR-421:10-30]

    uu      -    UUA            a   aaa 
caca  guaGGC CUCA   AAUGUUUGUUGa uga   a
||||  |||||| ||||   |||||||||||| |||   a
gugu  cguccg gggu   uuacagacaacu acu   u
    cu      c    uaa            -   aag 

>eca-mir-424 (-42.60)   [eca-miR-424:11-32]

---------------------       a  C      AA             g  au 
                     cgagggg ug AGCAGC  UUCAUGUUUUGAA ug  u
                     ||||||| || ||||||  ||||||||||||| ||  u
                     gcucccc au ucgucg  gagugcaaaacuu gc  a
gggguggaagguugaaggggc       c  a      cg             g  aa 

>eca-mir-448 (-64.10)   [eca-miR-448:73-94]

------           u a            g   u     ga au    a       
      ggcggggaggu g acauccugcaua ugc gccag  a  cccc uuuuau 
      ||||||||||| | |||||||||||| ||| |||||  |  |||| ||||| a
      ccgccccucUA C UGUAGGAUGUAU ACG Ugguc  u  gggg agaauc 
cuucgc           C C            -   U     gg cg    -       

>eca-mir-450a (-33.30)   [eca-miR-450a:18-39]

--gaaa     u       UUU     U              cag 
      gaugc aaacugu   UGCGA GUGUUCCUAAUAUg   u
      ||||| |||||||   ||||| ||||||||||||||   a
      cuaug uuuggua   acguu uacgaggguuauau   u
auauaa     u       cgu     u              aaa 

>eca-mir-450b (-28.40)   [eca-miR-450b-5p:12-33] [eca-miR-450b-3p:49-70]

-           UUU     U        G    ug aa 
 uacaaaauuau   UGCAA AUGUUCCU AAUA  u  u
 |||||||||||   ||||| |||||||| ||||  |  a
 auguuuugAUA   ACGUU UACAAGGG UUau  g  u
u           CCU     U        -    gu aa 

>eca-mir-451a (-37.40)   [eca-miR-451a:18-39]

gaaa     uc      UUU     U               aa 
    gaugc  aacuau   UGCGA GUGUUCCUAAUACgu  u
    |||||  ||||||   ||||| |||||||||||||||  a
    cuaug  uugaua   acguu uacaaggguuaugua  u
auaa     uu      cuu     u               aa 

>eca-mir-500 (-35.90)   [eca-miR-500:13-35]

    c c     -U         UAC UG    -AGA     g 
gcuc c cucuc  AAUCCUUGC   C  GGUG    guguu u
|||| | |||||  |||||||||   |  ||||    ||||| c
cgag g gagag  uuaggaacg   g  ccac    cguaa u
    a c     cc         --- gu    guaa     g 

>eca-mir-500-2 (-43.50)   [eca-miR-500:13-35]

    c       -U         UAC UG    AGAg   uuu 
gcuc cccucuc  AAUCCUUGC   C  GGUG    ugc   c
|||| |||||||  |||||||||   |  ||||    |||   u
ugag gggagag  uuaggaacg   g  ccac    acg   g
    a       cc         --- gu    -gua   uaa 

>eca-mir-501 (-37.50)   [eca-miR-501-5p:15-35]

-g   u      cuc      C    CU     AGAg   uuu 
  cuc cccucu   AUCCUU GUCC  GGGUG    ugc   c
  ||| ||||||   |||||| ||||  |||||    |||   c
  gag gggaga   uaggaa cggg  uccac    acg   g
cg   c      ccu      -    --     -gua   uaa 

>eca-mir-502 (-43.60)   [eca-miR-502-5p:16-36] [eca-miR-502-3p:52-73]

ugcucc        -         UAU UG     UAg   ugu 
      cccucucu aAUCCUUGC   C  GGUGC   ugc   c
      |||||||| |||||||||   |  |||||   |||   u
      gggagagA UUAGGAACG   G  CCACG   Acg   c
------        C         --- GU     -UA   uaa 

>eca-mir-503 (-48.50)   [eca-miR-503:6-28]

u    UA                 G   u g  g 
 gccc  GCAGCGGGAACAGUACU CAG g gc a
 ||||  ||||||||||||||||| ||| | || u
 cggg  cgucguccuuguuauga guc c ug c
a    cc                 g   u g  g 

>eca-mir-504 (-48.40)   [eca-miR-504:13-34]

   -g    -            G     A    -A  u   u 
gcu  cugu ugggAGACCCUG UCUGC CUCU  UC gua g
|||  |||| |||||||||||| ||||| ||||  || |||  
cgg  gaca acccuuugggac ggacg gagg  ag cau c
   ga    u            g     c    ga  u   u 

>eca-mir-505 (-44.90)   [eca-miR-505:51-72]

     ac    u           g    a        ucug 
gaugc  ccag gggggagccag aagu uugauguu    c
|||||  |||| ||||||||||| |||| ||||||||    c
cuacg  gguc cUCCUUUGGUC UUCA AACUGCga    a
     -a    u           G    C        uuug 

>eca-mir-507 (-40.50)   [eca-miR-507:57-77]

caug    -     g    c    uc    a      uc     ggc 
    uugu gugca ugcu cacu  agga gugcca  caugu   u
    |||| ||||| |||| ||||  |||| ||||||  |||||    
    gaca cacgu augA GUGA  UUCU CACGGU  guaua   a
caug    a     a    A    GA    C      UA     aag 

>eca-mir-508 (-44.94)   [eca-miR-508-5p:27-49] [eca-miR-508-3p:62-84]

---     -----  -  agc   -     g   c               U  U   CAuaga 
   accac     uc uc   ugg gugua ugc cUACUCCAGAGGGUG CA UCA      c
   |||||     || ||   ||| ||||| ||| ||||||||||||||| || |||       
   uggug     ag ag   acu cacau aug GAUGAGGUUUUCCAC GU AGU      u
cgg     uauau  c  -gu   a     a   A               U  U   acgaaa 

>eca-mir-509 (-29.80)   [eca-miR-509-5p:20-40]

----   ac   -     g   cc    -     CA   G       --g  u 
    cau  ugu gugug uac  UACU GCAGA  GUG CAAUCAu   ua a
    |||  ||| ||||| |||  |||| |||||  ||| |||||||   ||  
    gua  aca uacac aug  guga cgucu  cac guuagua   au a
uaga   -c   g     a   au    a     -c   a       aaa  u 

>eca-mir-514 (-25.40)   [eca-miR-514:55-75]

uucuuuu   gg  cc      -     aa  g         aua 
       ugu  ua  cuacuc cagag  ug caaucaugu   a
       |||  ||  |||||| |||||  || |||||||||    
       acg  au  GGUGAG GUCUC  AC GUUAgugua   c
-uucagu   ua  aA      U     -C  A         aau 

>eca-mir-532 (-33.72)   [eca-miR-532-5p:19-40] [eca-miR-532-3p:56-77]

gauuu    u       a  U      A    A   CC  uggca 
     gcuu cucucuu CA GCCUUG GUGU GGA  GU     u
     |||| ||||||| || |||||| |||| |||  ||     c
     cgaa gggaggA GU CGGAAC CACA CCU  ca     u
---uc    c       C  U      C    C   CC  uuaau 

>eca-mir-542 (-36.60)   [eca-miR-542-5p:15-36] [eca-miR-542-3p:53-74]

a  ac       auC    GG    UCA         -a   c 
 gg  cucagac   UCGG  AUCA   UGUCACGAg  uac a
 ||  |||||||   ||||  ||||   |||||||||  |||  
 cc  gggucug   AGUC  UAGU   ACAGUGUuc  gug c
-  ga       gAA    AA    UAG         ac   u 

>eca-mir-545 (-38.02)   [eca-miR-545:63-84]

cccag    ------g   a         - u            auug     auaaa 
     ccug       cac uuaguaggc c caguaaauguuu    gauga     u
     ||||       ||| ||||||||| | ||||||||||||    |||||     g
     ggac       gug aaucgucCG G GUUAUUUACAAA    CUacu     a
-----    accucua   c         U U            -CAA     cagua 

>eca-mir-652 (-55.20)   [eca-miR-652:61-81]

acgaau  cua                  gagag           ca  g 
      gg   ugcacugcacaacccuag     ggugccauuca  ua a
      ||   ||||||||||||||||||     |||||||||||  || c
      cc   acgugacGUGUUGGGAUC     CCGCGGUAAgu  au u
-cacau  aac                  ----A           ua  a 

>eca-mir-660 (-40.60)   [eca-miR-660:16-37]

----------cu    c          -C    U      C    U   gaau 
            gcuc uucuccugUA  CCAU GCAUAU GGAG UGu    u
            |||| ||||||||||  |||| |||||| |||| |||    c
            cgag gggaggacau  ggua cgugug ccuc acg    u
guacuacuguuc    c          ua    -      u    c   aaag 

>eca-mir-672 (-34.42)   [eca-miR-672:25-47]

gau    aucua  -      g   UG   UUGG   A          guaua 
   ggcg     gc ccuuua uuu  AGG    UGU CUGUGUGUGA     u
   ||||     || |||||| |||  |||    ||| ||||||||||     a
   cugc     cg gggagu aaa  uuc    acg gauacacacu     u
---    ----a  u      g   gu   uaua   -          auuua 

>eca-mir-764 (-39.10)   [eca-miR-764-5p:27-45] [eca-miR-764-3p:67-88]

-----auuu      uaaaaucua  a     G   U    -  U        a  cu g 
         ucgauc         gg ggcaG UGC CACU UG CCUCCUcc ug  u g
         ||||||         || ||||| ||| |||| || |||||||| ||  | g
         aguuag         cc cUGUC ACG GUGA AC GGAGGAgg ac  a a
gguuccuuu      -------ua  a     A   -    U  C        g  au a 

>eca-mir-767 (-46.40)   [eca-miR-767-5p:27-49] [eca-miR-767-3p:61-83]

gcuuuu   uuau             U C       UU  C      U    c 
      gua    agguuuuugcuca G ACCAUGG  GU UGAGCA Gcag a
      |||    ||||||||||||| | |||||||  || |||||| |||| u
      cgu    uccaaggacgagU C UGGUACC  CA ACUCGU Uguu g
gucauc   uacu             C U       -U  U      C    c 

>eca-mir-92a-2 (-34.00)   [eca-miR-92a:48-69]

  a    ug   g     uu  u   u     -      
uc uccg  ggu gggau  gu gca uacuu guguu 
|| ||||  ||| |||||  || ||| ||||| |||| a
ag aggU  CCG CCCUG  CA CGU AUgaa uauau 
  a    GU   G     UU  -   U     a      

>eca-mir-98 (-57.00)   [eca-miR-98:22-43]

a    uc    -          U                 U    ---------      aggg 
 ggau  ugcu caugccaggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||||  |||| |||||||||| ||||||||||||||||| ||||         ||||||    u
 cuua  acgg gugugguccc uuucaucauucaacaua caau         accccg    u
a    -u    u          -                 u    agaagauua      gauu 

>bmo-mir-306-as (-36.10)   [bmo-miR-306-as:11-31]

- a  --    g  G   C  G   C         accg 
 g gc  ccgc cU AGG AC AGG GGCUCUGAg    g
 | ||  |||| || ||| || ||| |||||||||     
 c cg  ggcg ga ucc ug ucc cugagacuc    c
g c  cc    -  g   a  a   a         acca 

>bmo-mir-2851-2 (-33.70)   [bmo-miR-2851:68-89]

--ugugguga        uc   a         a c    -     aaug 
          ucucucua  aca ucaucaugc c cagu gauau    u
          ||||||||  ||| ||||||||| | |||| |||||     
          AGAGAGAU  UGU AGUAGUGUg g guca cuaua    u
gagaagauaa        UA   C         a a    a     caca 

>bmo-mir-2851-1 (-28.30)   [bmo-miR-2851:68-89]

--ugugauaa     g  cc   a         a c    -    gaaug 
          ucucu ua  aca ucaucaugc c cagu gaua     u
          ||||| ||  ||| ||||||||| | |||| ||||      
          AGAGA AU  UGU AGUAGUGUg g guca cuau     u
gagaagauaa     G  UA   C         a a    a    acaca 

>bmo-mir-2852 (-18.50)   [bmo-miR-2852:11-30]

-        ----a -    --U   GG    U     uaaau    g 
 agcauaga     c CAGA   UUC  AUUU UUGUA     ugcu u
 ||||||||     | ||||   |||  |||| |||||     |||| a
 ucguaucu     g guuu   aag  uaga aacau     gcga u
a        gccaa a    uuu   --    c     caagu    g 

>bmo-mir-1-as (-29.72)   [bmo-miR-1-as*:11-32] [bmo-miR-1-as:48-69]

-cc     - c   AUA         A       ugauu 
   gcgca g uCC   CUUCUUUAC UUCCAUA     a
   ||||| | |||   ||||||||| |||||||     c
   cgcgu c AGG   GAAGGAAUG AGGGUau     a
gaa     u A   CAC         A       cagua 

>bmo-mir-2854 (-18.20)   [bmo-miR-2854:11-31]

-     -    ----uU  UUCA      C    C    uuu 
 aagcc cuuu      CU    AAACUG AGGA GGcc   a
 ||||| ||||      ||    |||||| |||| ||||   u
 uuugg gaag      ga    uuugac uuuu ccgg   a
c     u    uaaauc  cgca      c    -    ugc 

>bmo-mir-2855 (-20.10)   [bmo-miR-2855:11-33]

uguu  -     GG   -ACU   CA   CU    g  c 
    gu gugaC  GUA    UUG  UCG  GGCA ug a
    || |||||  |||    |||  |||  |||| ||  
    ca cacug  cgu    aac  agc  ccgu ac a
---g  g     -a   cucu   -c   -u    a  g 

>bmo-mir-2833b (-18.50)   [bmo-miR-2833b:42-62]

aga      gg    c    g -aa ug   -    u 
   auucgc  uaaa agug a   c  guc cuca a
   ||||||  |||| |||| |   |  ||| |||| u
   uaagug  auUU UCAU U   G  UAG GAgu g
aaa      --    U    G AAA GU   A    u 

>bmo-mir-2856-1 (-19.60)   [bmo-miR-2856*:12-31] [bmo-miR-2856:57-78]

ac    c  uc      -GU     GA     ag   g  acag 
  ugua ua  UUGUCU   GGUUC  GGGUG  auu uc    c
  |||| ||  ||||||   |||||  |||||  ||| ||    a
  auau au  AACAGA   CCAAG  CUUAC  ugg gg    g
aa    a  -u      AUG     AG     -A   g  auau 

>bmo-mir-2856-2 (-20.90)   [bmo-miR-2856*:11-30] [bmo-miR-2856:56-77]

cugugcuauc      -GU     GA     ag  ug  acag 
          UUGUCU   GGUUC  GGGUG  au  uc    c
          ||||||   |||||  |||||  ||  ||    a
          AACAGA   CCAAG  CUUAC  ug  gg    c
aaauauaauu      AUG     AG     -A  gu  auau 

>bmo-mir-2857 (-26.40)   [bmo-miR-2857:11-32]

-       a  U A      -  A     AA  U   ggag 
 cuguaug cc G UGGGAC AC UACGG  CA gcu    c
 ||||||| || | |||||| || |||||  || |||    u
 gacauac gg c acucug ug gugcu  gu cga    a
g       a  u -      c  -     -a  -   agaa 

>bmo-mir-2859 (-21.90)   [bmo-miR-2859:51-73]

cgca   g  ga -    g g  c    -ua  uuac   g 
    ccu ag  g ccug c ga cagu   ug    gau a
    ||| ||  | |||| | || ||||   ||    ||| a
    ggg uc  C GGAC G CU GUUA   AC    cua c
cuca   g  AA A    G G  A    UCA  cccc   a 

>bmo-mir-2860 (-19.10)   [bmo-miR-2860:11-32]

gaag   a  --C     --A G     -  GAG    --g  a 
    gac cc   GCUGU   U AUUGU CC   GUAc   ag g
    ||| ||   |||||   | ||||| ||   ||||   ||  
    cug gg   cggua   g uagca gg   cgug   uc a
cgca   a  aaa     gga g     a  --a    gca  g 

>hsa-mir-2861 (-55.20)   [hsa-miR-2861:54-72]

-gg       gca    - g    -  -  u      uc    acu 
   cgccucu   gcuc c gcuc cc cc ggccuc  ggga   a
   |||||||   |||| | |||| || || ||||||  ||||    
   gcggaga   cggg G CGGG GG GG CCGGGG  cccu   c
ggg       agg    c G    U  C  U      ga    gaa 

>mmu-mir-2861 (-47.30)   [mmu-miR-2861:52-70]

   c    cag     g  c  -  u       c    acu 
cuc ucug   cuccg cu cc cc ggccucc ggga   a
||| ||||   ||||| || || || ||||||| ||||    
gag aggc   gaGGC GG GG GG CCGGGGg cccu   c
   a    -ca     G  C  C  U       a    gaa 

>ola-mir-430a-1 (-30.60)   [ola-miR-430a:50-70]

      -       a   ug   -ca      g   - uuuc 
ggacau aaagaug ccu  aca   ggcacu acu c    u
|||||| ||||||| |||  |||   |||||| ||| |     
ccugug uuuuuAU GGG  UGU   UCGUGA Uga g    u
      g       -   GU   UCA      A   u uuuc 

>ola-mir-430c-1 (-34.20)   [ola-miR-430c:51-72]

--c      uc    g          -a      g   -    u 
   agacau  agau accuuaacau  ggcacu acu ugaa a
   ||||||  |||| ||||||||||  |||||| ||| ||||  
   ucugug  ucuG UGGGGUUGUA  UCGUGA Uga guuu u
cga      gu    A          CA      A   c    c 

>ola-mir-430b-1 (-31.52)   [ola-miR-430b:50-71]

      a     g    ug   -ca      g   uuuuc 
ggacau aagau accu  aca   ggcacu acu     u
|||||| ||||| ||||  |||   |||||| |||     u
ccugug uuuuA UGGG  UGU   UCGUGA Uga     c
      g     A    GU   ACA      A   uguuu 

>ola-mir-430c-2 (-35.20)   [ola-miR-430c:53-74]

  cg     uc    g          -a      g   -    u 
gu  gacau  agau accuuaacau  ggcacu acu ugaa u
||  |||||  |||| ||||||||||  |||||| ||| ||||  
cg  cugug  ucuG UGGGGUUGUA  UCGUGA Uga guuu u
  au     gu    A          CA      A   c    c 

>ola-mir-430c-3 (-35.60)   [ola-miR-430c:53-74]

-au       uc    g          -a      g   -    u 
   cagacau  agau accuuaacau  ggcacu acu ugaa u
   |||||||  |||| ||||||||||  |||||| ||| ||||  
   gucugug  ucuG UGGGGUUGUA  UCGUGA Uga guuu u
agu       uu    A          CA      A   c    c 

>ola-mir-430d-1 (-27.80)   [ola-miR-430d:51-72]

      - uuc     c        c   ga    gau  uuu 
gaaucg c   gagac aucucaaa aga  cacu   gg   u
|||||| |   ||||| |||||||| |||  ||||   ||   g
uuuggu g   cucuG UGGGGUUU UCU  GUGA   cc   a
      u uaa     U        C   UC    -AU  uuu 

>ola-mir-430a-2 (-36.90)   [ola-miR-430a:50-70]

            g    ug   -ca      g   - uuuc 
ggacaucaagau accu  aca   ggcacu acu c    u
|||||||||||| ||||  |||   |||||| ||| |     
ccugugguuuua UGGG  UGU   UCGUGA Uga g    u
            A    GU   UCA      A   u uuuc 

>ola-mir-430c-4 (-13.85)   [ola-miR-430c:60-81]

ccuuuc    -     uuuccu   caaa  aua      cnnnnnnnnnnucuuu   g 
      uuag cacua      gac    ac   ccaaca                gca U
      |||| |||||      |||    ||   ||||||                ||| A
      gauc guggu      cuG    UG   GGUUGU                CGU A
---aac    u     -----u   ---A  --G      ------------ACAU   G 

>ola-mir-430d-2 (-29.80)   [ola-miR-430d:51-72]

      - uuc     c        c   ga    gau  uuu 
gaaucg c   gaggc accucaaa aga  cacu   gg   u
|||||| |   ||||| |||||||| |||  ||||   ||   g
uuuggu g   cucuG UGGGGUUU UCU  GUGA   cc   a
      u uaa     U        C   UC    -AU  uuu 

>ola-mir-430a-3 (-36.90)   [ola-miR-430a:50-70]

            g    ug   -ca      g   - uuuc 
ggacaucaagau accu  aca   ggcacu acu c    u
|||||||||||| ||||  |||   |||||| ||| |     
ccugugguuuua UGGG  UGU   UCGUGA Uga g    u
            A    GU   UCA      A   u uuuc 

>ola-mir-430a-4 (-36.90)   [ola-miR-430a:50-70]

            g    ug   -ca      g   - uuuc 
ggacaucaagau accu  aca   ggcacu acu c    u
|||||||||||| ||||  |||   |||||| ||| |     
ccugugguuuua UGGG  UGU   UCGUGA Uga g    u
            A    GU   UCA      A   u uuuc 

>ola-mir-430c-5 (-34.20)   [ola-miR-430c:53-74]

guc      uc    g          -a      g   -    u 
   ggacau  agau accuuaacau  ggcacu acu ugaa u
   ||||||  |||| ||||||||||  |||||| ||| ||||  
   ucugug  ucuG UGGGGUUGUA  UCGUGA Uga guuu u
uga      gu    A          CA      A   c    c 

>ola-mir-430d-3 (-27.20)   [ola-miR-430d:51-72]

      - uuc     c        c   ga    gau  uuu 
gaaucg c   gaggc aucucaaa aga  cacu   gg   u
|||||| |   ||||| |||||||| |||  ||||   ||   g
uuuggu g   cucuG UGGGGUUU UCU  GUGA   cc   a
      u uaa     U        C   UC    -AU  uuu 

>ola-mir-430b-2 (-28.70)   [ola-miR-430b:50-71]

      a     g    ug   -ca      g   - uuuc 
ggacau aagau accu  aca   ggcacu acu c    u
|||||| ||||| ||||  |||   |||||| ||| |     
cuugug uuuuA UGGG  UGU   UCGUGA Uga g    u
      g     A    GU   ACA      A   u uuuc 

>ola-mir-430c-6 (-11.20)   [ola-miR-430c:58-79]

aaaaaaauuuucaaa  -uuuu   uuugg     nnnnnnnnnna    -  u 
               cu     ccu     gcccc           auuu cu u
               ||     |||     |||||           |||| ||  
               ga     ggg     UGGGG           UGAA ga g
------------aac  ucugu   ucuGA     -UUGUACAUCG    U  c 

>ola-mir-430c-7 (-14.90)   [ola-miR-430c:47-68]

aaaagaaauguguuucuccuc   -  -    uu  auu   uu   gUAAG 
                     ugc gg uacc  ga   ucu  gca     U
                     ||| || ||||  ||   |||  |||      
                     acg uc gugg  cu   GGG  UGU     G
--------------------a   a  u    uu  GAU   GU   ACAUC 

>osa-MIR2862 (-128.30)   [osa-miR2862:26-46]

-----------        c a                    A   U                                     c   uaaaacu       c    ------       u 
           gugaaucu g cccuccaaaacaaaUCCAAC GCU AGAUUCGUCCacgucaucaugaguaaaaauuuuauuc cag       uuuacuc agga      auuuuac c
           |||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||       ||||||| ||||      ||||||| c
           cacuuaga c gggagguuuuguuuagguug cga ucuaagcaggugcaguagugcucauuuuuaaaaugag guc       aaaugag uccu      uaaaaug u
ccacuguaucc        a c                    c   c                                     c   ------u       -    cauuuu       a 

>osa-MIR2863a (-59.20)   [osa-miR2863a:11-31]

u            U                     g     cu  agggaguaaauucua 
 ggguacccaUUG CCCAUUCUAGUUUAGCUaaau aacua  ac               u
 |||||||||||| ||||||||||||||||||||| |||||  ||                
 uccauggguaac ggguaagaucgaguugauuua uugau  ug               g
-            u                     a     uu  agugaaaaggaccag 

>osa-MIR2864 (-45.30)   [osa-miR2864.1:11-31] [osa-miR2864.2:22-42]

ucuauucag      C  C                 U     uagcaaua      uc 
         cUUUUG UG CCUUGUUUUGCAUUGUA AGGUA        ugccau  u
         |||||| || ||||||||||||||||| |||||        ||||||   
         gagaac ac ggaacaaaacgugacau uccau        acggug  g
---------      a  a                 c     --------      au 

>osa-MIR2865 (-59.50)   [osa-miR2865:11-32]

----   c   -      A      G                g        cc 
    gau uga aucCUC GCAGUC ACUGUACCGUGccuuu ucauugau  a
    ||| ||| |||||| |||||| |||||||||||||||| ||||||||   
    cua acu uaggag cgucag ugacguggcacggaaa agugauug  c
aggc   -   c      a      -                a        ua 

>osa-MIR2866 (-58.10)   [osa-miR2866:11-30]

------                               a     -acua  acg 
      acccuuuuucUCUAGUUUGUGUUCAGCAUCu uguca     ug   c
      ||||||||||||||||||||||||||||||| |||||     ||    
      ugggaaaaagagaucaaacacgagucguaga acagu     ac   u
uuauac                               c     caaac  aag 

>osa-MIR2867 (-60.70)   [osa-miR2867:13-34]

caau                       A   C A  a        g   caa 
    ugacggcgUGUGCCAUCCCACAC UCC G uc uggcgugu aca   c
    ||||||||||||||||||||||| ||| | || |||||||| |||    
    acuguuguacacgguagggugug agg c ag accgugcg ugu   u
----                       c   a c  c        -   agg 

>osa-MIR2868 (-36.30)   [osa-miR2868:11-30]

-------ucu   g                        ugccc 
          uuu uccUUGGUUUUGUGUAGUAGAAAa     a
          ||| ||||||||||||||||||||||||      
          aaa aggaaccaaaacacguuaucuuuu     c
auacacaugu   g                        uacuu 

>osa-MIR2869 (-82.10)   [osa-miR2869:131-151]

gggaggaggag   -             u                        gaa   u  g   uu    u   ag ag  g 
           cuu cccaggauuuaau uugggagguggugaguacuaagga   cag au uug  cagc ggc  g  cu c
           ||| ||||||||||||| ||||||||||||||||||||||||   ||| || |||  |||| |||  |  ||  
           gga GGGUCUUAAAUUA AGCCCUccauuacucaugguuccu   guu ug gac  gucg ccg  c  gg a
----ugaauua   C             C                        --a   -  g   cg    -   aa ga  a 

>osa-MIR2870 (-59.50)   [osa-miR2870:132-152]

cuu   c                     a      c          cu  uuacaaaugaguaaccacuaacuucugaguu 
   gua uucaguuugucucuccaaacu auuagu caaugaacuu  ga                               c
   ||| ||||||||||||||||||||| |||||| ||||||||||  ||                                
   cgu aagucAAACAGAGGGGUUUGA UAAUca guuacuugaa  cu                               u
---   a                     C      c          ac  uucuuuaacguuaucaauauagagguauuag 

>osa-MIR2863b (-40.20)   [osa-miR2863b:71-91]

ucuuuu      a         c           a      c    a a 
      acccac cuaguucaa uaaaugaacua auuuca uuuu g a
      |||||| ||||||||| ||||||||||| |||||| |||| | u
      ugggUG GAUCAGGUU AUUUGCUUgau uaaagu aaaa c c
auuaac      A         U           g      a    a a 

>osa-MIR2905 (-60.80)   [osa-miR2905:51-71]

-      c                           cauug 
 acugca ugugccuuugucacugacaugugggcc     a
 |||||| |||||||||||||||||||||||||||      
 ugacgu gcACGGAAACAGUGACUGUACAUccgg     u
c      a                           accuc 

>osa-MIR2871a (-45.80)   [osa-miR2871a:92-112]

-----  u                  c        aa    --------a        -    cuuu 
     ca ggugaccguagaaacuag auagaaaa  guag         uaucucaa guga    g
     || |||||||||||||||||| ||||||||  ||||         |||||||| ||||     
     gu uCACUGGUAUCUUUGAUU UAUcuuuu  cauc         auaggguu cauu    u
cggug  u                  U        -c    aaugaacag        g    uacu 

>osa-MIR2871b (-74.40)   [osa-miR2871b:106-126]

         c                       c      aaa       auaucucaagugacuuuguuc 
auggcugcc accauggugaccguagaaacuaa auagaa   gagguag                     a
||||||||| ||||||||||||||||||||||| ||||||   |||||||                     u
uaccgacgg ugguauCACUGGUAUCUUUGAUU UAUcuu   uuccauc                     u
         -                       U      ---       aaugaacagauaagguugcau 

>osa-MIR2872 (-130.30)   [osa-miR2872:331-351]

cuuaga     uca                 ua   u        u  ugauu     c             auggcaacaggaugcucgaucuuccaucagguaaagauaacucuugauuuggcgaaaacuugucacacaugauuugacuuucgaucaacacgaucuaaacuugcaauuucag 
      uuauu   uaguucgguuuguagaa  cca cuucgagu cu     aauca ucaucugcaauug                                                                                                                c
      |||||   |||||||||||||||||  ||| |||||||| ||     ||||| |||||||||||||                                                                                                                 
      agugg   aUCAAGCCAAACAUCUU  GGU gaagcuca ga     uuagu aguagacguuaac                                                                                                                a
-----a     -ug                 GG   u        c  ----u     a             ucgauguuagauggaaaaagaacgaacauaagaagcuaagcguacguuccuaaucggaagagucacuuccgguuagucuaaagccgugccaaccauugaucuuuucuguacc 

>osa-MIR2873 (-43.30)   [osa-miR2873:75-98]

aauauauuc           c           c           u     uu 
         uuaccaaauuu aaguucaaacu aacuuuauuug gagaa  u
         ||||||||||| ||||||||||| ||||||||||| |||||  u
         AAUGGUUUAAA UUCAGGUUUGA uugaaguaaac cucuu  u
-----uaaC           -           A           u     ug 

>osa-MIR2874 (-64.60)   [osa-miR2874:69-92]

       guuu          ga                    c     u 
acacuau    gcacuguuug  acuguucacauguugguucc ggcag a
|||||||    ||||||||||  |||||||||||||||||||| ||||| a
ugugaua    UGUGACAAAC  UGACAAGUGUAcaaucaagg ucguc a
       -aaC          UG                    -     a 

>osa-MIR2875 (-8.10)   [osa-miR2875:40-63]

--------u         uaugaacuguagaugacuguaaaua 
         gaucaaaua                         u
         |||||||||                         a
         cuaguuuau                         c
auguuugug         AUAUUUGACAUAUACUGACAUUUAa 

>osa-MIR2876 (-58.20)   [osa-miR2876:151-171]

uuuuugagg               c           a            auaauugcuccugagcuuguguuugucauaaauguuaguuguua 
         aaauugcuggcagca uguuuauauag aauuucuguaaa                                            c
         ||||||||||||||| ||||||||||| ||||||||||||                                            u
         uuuaacgacCGUUGU ACAAGUAUAUC UUaaggacauuu                                            g
--------g               C           C            guucguucuuacaaaucccuuugaaaauuccuuucuuuguagau 

>osa-MIR2877 (-191.30)   [osa-miR2877:292-315]

------------aaucuugguuuaauguaucauccgauguccaaagugcagaugacgcagcuugggugcugauguggcaa         gu                -   c c  au    c         uc     u     c     u        --uuuug      gg    aacuaugaauuu  u 
                                                                                uccacggug  gagaauuuugcauuua gcc c uc  gcua aguaugccu  aaguc acucc accac cccaaauc       gugcau  cuua            gc g
                                                                                |||||||||  |||||||||||||||| ||| | ||  |||| |||||||||  ||||| ||||| ||||| ||||||||       ||||||  ||||            || g
                                                                                aggugucac  cucuuaaaacgugaau cgg g ag  ugau ucauacggg  uuuag ugagg uggug ggguuuag       uacgua  gagu            cg a
aaagggagauuuuuugugggaauuagaaccaaauuacauagugagcUCCGGGUUUCACGUCUCCUACGUUgaguccgaac         ug                g   a a  --    a         gc     c     a     -        uuguuua      aa    ------------  u 

>osa-MIR2878 (-57.90)   [osa-miR2878-5p:21-44] [osa-miR2878-3p:63-86]

-       uuc                                      a 
 auaaugu   uuuaguucuuUACAUGUAUAAAAUUCUGAGGAUGuuau u
 |||||||   ||||||||||||||||||||||||||||||||||||||  
 uauuaca   aaauUAAGAAAUGUACAUAUUUUAGGACuccuacagua a
a       uac                                      u 

>osa-MIR1863c (-101.10)   [osa-miR1863c:259-282]

--------------------------------------agcaaugcaucaguuauguuuccuggaucauuaaauca     u  uuau       c    ug        ----------     ugu        aaagcacuuuaugaucugaaagugcuggcuguau 
                                                                            uugaa gu    cuagcac aauc  cugcugau          cuguu   agucauga                                  g
                                                                            ||||| ||    ||||||| ||||  ||||||||          |||||   ||||||||                                   
                                                                            ggcuu ca    gguugug uuag  gaugacua          gauaa   ucagugcu                                  c
cagagguuuUCAUUACGUAGUCGGUUCAAAGAUuuaguuauuguaccauagucucgauuauugauacuaggauuug     -  ucuc       c    gu        auaacguagu     --u        aacguuauuauugguaucuuaccccuuuugguac 

>osa-MIR2879 (-86.21)   [osa-miR2879:269-292]

ugcccag   cg  c           c         c  a    c        --       ua   a  a     g   a     -   a  ugu  a    u  caaucagaucacaaaagauuauacugacacuaaauucaucugaucuagua 
       acg  cu uggucauuauu uaacauauc gg ucaa uggagaga  gaauuuu  gaa gg uguuu ugc cuugu uca cc   uu acaa ca                                                  c
       |||  || ||||||||||| ||||||||| || |||| ||||||||  |||||||  ||| || ||||| ||| ||||| ||| ||   || |||| ||                                                   
       ugu  ga aCCAGUAAUAA AUUGUGUAG CC aguu accucucu  uuuaaaa  uuu cc gcgaa aug gagca ggu gg   aa uguu gu                                                  u
-------   au  u           A         A  G    a        aa       ua   a  -     a   g     c   a  --u  c    u  agauuuuuacuaguucaucaguuuuguucuccguaauacgccuuuuuauu 

>osa-MIR2880 (-113.80)   [osa-miR2880:11-34]

       a       A            A       a c  a         u         ag  augccaauaccuaguagguauuggc 
augcuac ggACGGU UCCCGUUCGGAC GGAUGau c uc gagguaucg cugauaccc  gu                         g
||||||| ||||||| |||||||||||| ||||||| | || ||||||||| |||||||||  ||                          
uacgaug ccugcca agggcaagucug ccuacua g ag uuccauagc gacuauggg  ca                         a
       c       a            c       - u  a         c         -g  aaccuguacuacuauggaguuccau 

>osa-MIR396g (-85.80)   [osa-miR396g:151-171]

--     cguc   g   gg     -   gag      c  ga aggag g   g     g      ----a   g -g     ---------  g     u 
  ggcga    gag cgu  aagga guc   guggag ug  g     c ccg cgccg cgccgu     gcu g  cgcgu         cg cgucg g
  |||||    ||| |||  ||||| |||   |||||| ||  |     | ||| ||||| ||||||     ||| |  |||||         || ||||| c
  ccguu    cuu GCA  UUCUU CGG   CACCUu ac  c     g ggc gcggc gcggca     cgg c  gcgcg         gc gcggc g
cg     ----   G   AG     U   --A      u  gg ---gg g   g     g      gaugg   g ag     agagguaga  g     g 

>osa-MIR396h (-68.20)   [osa-miR396h:111-131]

ag   ----    -gg        -g    ug   guggg   g      g  ga g     ---ga   g  g 
  ggc    gccg   gaggaggu  gugg  gug     ggc acgccg cg  g uguuc     cgc gc g
  |||    ||||   ||||||||  ||||  |||     ||| |||||| ||  | |||||     ||| ||  
  ccg    uGGC   UUCUUUCG  CACC  uac     ccg ugcggc gc  c gcagg     gcg ug a
ca   uucu    AAG        GA    Uu   aggaa   g      g  gg g     aggag   g  g 

>osa-MIR396i (-60.60)   [osa-miR396i:91-111]

--uaca    g g    u       -g         a    --gg  g  gg   -  ug  g 
      gcga u guuc ggaaggc  guggaggug cggc    cg cc  cgc cg  gc g
      |||| | |||| |||||||  ||||||||| ||||    || ||  ||| ||  || g
      cguu G CAAG UCUUUCG  CACCUucgc gucg    gc gg  gug gc  cg g
cgccgg    - G    U       GA         -    agca  g  gg   a  gu  g 

>osa-MIR1863b (-142.30)   [osa-miR1863b:304-327]

-----   u  c             c     c  c       -                 -------a     a    aaugaau  uuau       caauccccugcugcuaggagcuguagcucucggggcaguaccuaauccgcugcugaucuguuucuagucaugaaaagcacugugaucug 
     caa ag aaugcaucaguua guuuc ua auaguua caugguaucagagcuga        auccu aacc       gu    ccagcac                                                                                         u
     ||| || ||||||||||||| ||||| || ||||||| |||||||||||||||||        ||||| ||||       ||    |||||||                                                                                         a
     guu uc uuacguagucggu cagag au UGUCAAU GUACCAUAGUCUCGAuu        uagga uugg       ca    gguugug                                                                                         a
caaag   u  a             u     -  U       U                 gucgauuc     g    ---gguu  ucuc       uuuagguagugacuaauaacguagugacaguccagugcuuagguugcuaccgguaucuuaacccguuuugguaccguacgucguucgug 

>bta-mir-193a-2 (-18.40)   [bta-miR-193a:33-51]

au     -   c         g a    
  ggcug ccu acaagguuu g gcu 
  ||||| ||| ||||||||| | || g
  UUGAC GGA UGUUUCAGG u cgu 
ac     C   -         G c    

>bta-mir-378-2 (-14.80)   [bta-miR-378:8-29]

  -ag  cA  GG   UGG   C   A   u  a   uac 
gg   ag  CU  ACU   AGU AGA GGC gg gcu   a
||   ||  ||  |||   ||| ||| ||| || |||    
cc   uc  ga  ugg   uca ucu cug cc cga   g
  gca  aa  gg   ---   -   a   -  a   cgg 

>bta-mir-669 (-25.20)   [bta-miR-669:7-28]

ag   --gU    G  UG             g 
  agu    GUGG UG  UGCAUGUGCGUGu u
  |||    |||| ||  |||||||||||||  
  ucg    uauc gu  guguauacguaca g
ug   auuc    g  gu             c 

>bta-mir-2881 (-31.10)   [bta-miR-2881:16-33]

      ug  a   g -   C          G     
uguguu  gg guu G GGG GGGGGGGCGG UGga 
||||||  || ||| | ||| |||||||||| ||| u
auacag  uc cag u cuc cccuucuguc accu 
      ug  a   g g   -          g     

>bta-mir-2882 (-23.40)   [bta-miR-2882:2-20]

cA    -    -CCC    C  --   ccg 
  GCCC GGGC    UCCC UG  gcu   c
  |||| ||||    |||| ||  |||    
  cggg cccg    aggg ac  cga   c
uc    a    accc    u  ua   cac 

>bta-mir-2883 (-29.20)   [bta-miR-2883:43-60]

gag     -   acca   g  c c   -    c 
   gcggc cag    gca gg g agg ggac a
   ||||| |||    ||| || | ||| |||| u
   cgCCG GUU    UGU CC C UCc ccug g
gug     A   ---G   G  - U   u    u 

>bta-mir-2884 (-20.10)   [bta-miR-2884:15-33]

----  c   --g -  c    CUA    CG       G      ugu 
    gc acu   c cc auuG   CUAC  AUUGGAU Guuuag   u
    || |||   | || ||||   ||||  ||||||| ||||||    
    ug uga   g gg uaau   gaug  uaaccua uagguu   g
cgag  u   aaa u  a    uaa    aa       a      ccc 

>bta-mir-2885 (-31.00)   [bta-miR-2885:30-48]

     ---         - ---a   g  gg 
ucugg   ggcgccccg c    ccg cg  c
|||||   ||||||||| |    ||| ||  a
aggcu   ccGCGGGGC G    GGC GC  g
     cug         C CGAC   G  ag 

>bta-mir-2886 (-20.40)   [bta-miR-2886:40-57]

cc   -  --acu   -   --uc  a    c  c   aua 
  ggc cu     ugg ggc    cg gccg ug cgc   c
  ||| ||     ||| |||    || |||| || |||    
  ucg ga     acu ccg    GC CGGC GC GCG   a
--   c  cuucc   g   CCAC  -    C  C   Auu 

>bta-mir-2887-1 (-29.70)   [bta-miR-2887:4-23]

c    G -A   G GU    UG     a 
 guCG G  CCG G  CCGG  CGgag g
 |||| |  ||| |  ||||  |||||  
 cggc c  ggc c  ggcc  gcuuc c
c    g gg   a ag    cu     c 

>bta-mir-2887-2 (-29.70)   [bta-miR-2887:4-23]

c    G -A   G GU    UG     a 
 guCG G  CCG G  CCGG  CGgag g
 |||| |  ||| |  ||||  |||||  
 cggc c  ggc c  ggcc  gcuuc c
c    g gg   a ag    cu     c 

>bta-mir-2888-1 (-29.20)   [bta-miR-2888:47-65]

-----      u   ug ag -au      g     
     ccucuc ccc  c  c   cucagg cacu 
     |||||| |||  |  |   |||||| ||| g
     GGGGGG GGG  G  g   ggguuc gugu 
GGUUG      U   GU Gg gcu      a     

>bta-mir-2888-2 (-34.40)   [bta-miR-2888:43-61]

      u   ucua      a  ug   ug   guc 
ggaggg gcc    agccuc cu  ucc  ccu   a
|||||| |||    |||||| ||  |||  |||    
ccuuuc cGG    UUGGGG GG  GGG  GGg   a
      -   ----      -  GU   GU   gua 

>bta-mir-2889 (-33.80)   [bta-miR-2889:3-23]

g  -     GG       --G    C g  uu 
 cG UCCCC  GGCUCCC   CCGG g ag  c
 || |||||  |||||||   |||| | ||   
 gc agggg  ccggggg   ggcc c uu  g
g  u     --       agg    a g  ug 

>bta-mir-2890 (-44.20)   [bta-miR-2890:53-72]

-cggc        aa   --    ug   u     g ccc 
     ggccggga  ggu  gggc  ggc ccggg c   u
     ||||||||  |||  ||||  ||| ||||| |    
     CCGGCCCU  CCG  CCCG  ucg ggccc g   c
guguU        CG   GC    --   u     - ccc 

>bta-mir-2891 (-18.50)   [bta-miR-2891:5-24]

aaaaA       -------G   G  UA     a   ua         a 
     UCUUUGG        CUA GU  GUUcu uuu  ugaucuguu u
     |||||||        ||| ||  ||||| |||  |||||||||  
     agagacu        ggu ua  uagga aag  auuggguaa g
-----       agaaagaa   g  cc     a   ga         a 

>bta-mir-2892 (-44.89)   [bta-miR-2892:3-24]

gu    --A   A    C   --C    cccc -    cccccccc   c   gu 
  GGCG   CGG GGCG GAC   CCCC    c cccc        cgc ccg  c
  ||||   ||| |||| |||   ||||    | ||||        ||| |||   
  ccgc   gcc ccgc cug   gggg    g gggg        gcg ggc  c
-c    ccc   -    -   aca    ucuc c    accgccca   u   ag 

>bta-mir-2893 (-32.20)   [bta-miR-2893:2-21]

-c U       ---AAU      GG  ug  g 
  G GGAGGAG      GCCCGG  cg  cu g
  | |||||||      ||||||  ||  ||  
  c ccuccuc      cggguc  gc  gg g
cu -       gacggu      gg  gu  c 

>bta-mir-2894 (-34.50)   [bta-miR-2894:60-80]

c   a   g   uc   aca   cccu   uc      c   u a 
 gca cga ggc  ggg   cag    gcu  cuggcc acg c c
 ||| ||| |||  |||   |||    |||  |||||| ||| |  
 uGU GCU CCG  CCC   GUC    CGA  gaccgg ugc g c
c   -   A   -U   --G   ---C   --      -   u c 

>bta-mir-2895 (-11.60)   [bta-miR-2895:17-39]

cc  ga    c    cCCU  U   -    CAU  A   A   u 
  cu  guug aauu    GC GAU CUCA   UA UUC ucu u
  ||  |||| ||||    || ||| ||||   || ||| ||| g
  ga  uaac uugg    ug cug gagu   au aag aga c
cc  aa    -    -uuu  u   u    -cu  a   -   u 

>bta-mir-2896 (-18.50)   [bta-miR-2896:34-51]

aca     c   - g   a  -    aca 
   cccgg ugg c uca cu cuga   g
   ||||| ||| | ||| || ||||    
   gggCU ACC G AGU GA GGCu   a
gaa     -   U A   A  C    cuu 

>bta-mir-2897 (-35.50)   [bta-miR-2897:1-20]

G    G     -     CGAGcac    uc      c 
 GUGG AGGGU CCCAC       ccug  ggcugg a
 |||| ||||| |||||       ||||  |||||| g
 cacc ucucg gggug       ggac  ccggcc c
a    g     u     -----au    --      c 

>bta-mir-2898 (-13.82)   [bta-miR-2898:50-67]

-gguuua   -     cu   ag    uu    uucuu 
       aug cucug  guc  cgcu  gaaa     a
       ||| |||||  |||  ||||  ||||     c
       ugc GGGGC  UAG  GUGG  uuuu     u
uuaauaa   A     CG   AG    Uu    ucuaa 

>bta-mir-2899 (-21.10)   [bta-miR-2899:40-57]

aggg    ag  g      a  aa   -gg   a 
    ggag  uu cggcuc ug  cug   ucc g
    ||||  || |||||| ||  |||   |||  
    ccuu  aA GUUGGG GC  GGC   agg g
ucga    gg  G      -  CG   GGA   u 

>bta-mir-2900 (-22.20)   [bta-miR-2900:33-52]

agucaagugagcg     a   g       
             gccgc ccg cucucc 
             ||||| ||| ||||| c
             CGGCG GGC GGGAgg 
---gaAAGGUCAG     -   -       

>bta-mir-2901 (-49.30)   [bta-miR-2901:62-82]

ac     u u   c cu         -gc     --u     a 
  gcgcu c cgg g  cacucggcg   accac   gccgc a
  ||||| | ||| |  |||||||||   |||||   |||||  
  CGCGA G GCC C  GUGAGCCgc   uggug   cggcg a
uU     - C   - UC         guc     cuu     u 

>bta-mir-2902-1 (-32.70)   [bta-miR-2902:41-61]

ucac    g       u a  g       g gg 
    ccca ucucuag g ga agccaug c  c
    |||| ||||||| | || ||||||| |   
    GGGU GGAGGUC C CU UCGGUGc g  a
guca    -       - -  G       g gg 

>bta-mir-2902-2 (-32.70)   [bta-miR-2902:41-61]

ucac    g       u a  g       g gg 
    ccca ucucuag g ga agccaug c  c
    |||| ||||||| | || ||||||| |   
    GGGU GGAGGUC C CU UCGGUGc g  a
guca    -       - -  G       g gg 

>bta-mir-2903 (-64.40)   [bta-miR-2903:18-36]

c   -   cc   -            CU  A          - u 
 gcc gcu  gcu cccggUUCCGCG  CU CGCCAGCccg c g
 ||| |||  ||| ||||||||||||  || |||||||||| | c
 cgg cgg  cgg gggccgaggcgc  ga guggucgggc g c
a   a   cc   c            cg  c          c u 

>bta-mir-2904-1 (-38.20)   [bta-miR-2904:14-32]

     ag     -    AG CU   UU  CC    a 
acggc  cgccg cGGG  C  CGG  GG  UCgg u
|||||  ||||| ||||  |  |||  ||  ||||  
ugccg  gcggc gccc  g  gcc  cc  ggcc a
     -g     c    cu cc   --  cu    g 

>bta-mir-2904-2 (-38.20)   [bta-miR-2904:14-32]

     ag     -    AG CU   UU  CC    a 
acggc  cgccg cGGG  C  CGG  GG  UCgg u
|||||  ||||| ||||  |  |||  ||  ||||  
ugccg  gcggc gccc  g  gcc  cc  ggcc a
     -g     c    cu cc   --  cu    g 

>bta-mir-2904-3 (-38.20)   [bta-miR-2904:14-32]

     ag     -    AG CU   UU  CC    a 
acggc  cgccg cGGG  C  CGG  GG  UCgg u
|||||  ||||| ||||  |  |||  ||  ||||  
ugccg  gcggc gccc  g  gcc  cc  ggcc a
     -g     c    cu cc   --  cu    g 

>hsa-mir-2909 (-25.80)   [hsa-miR-2909:4-24]

--         -GC     -  -      ucuuu  c 
  gguGUUAGG   CAACA UC UCUUGG     cc c
  |||||||||   ||||| || ||||||     || u
  ccgcaauuc   guugu gg agaacc     gg g
ua         aac     c  u      ---cu  u 

>ssc-mir-206 (-32.70)   [ssc-miR-206:50-71]

uucc    gc                 cc     c gauu 
    cgag  cacaugcuucuuuauau  ccaua g    a
    ||||  |||||||||||||||||  ||||| |     
    gcuc  GUGUGUGAAGGAAUGUA  GGUau c    c
aauu    uA                 -A     - aguu 

>ssc-let-7a (-34.60)   [ssc-let-7a:8-29]

-      uU   G   U            Uuagaauug    aa 
 cccagg  GAG UAG AGGUUGUAUAGU         uauc  g
 ||||||  ||| ||| ||||||||||||         ||||   
 ggguuc  uuc auc uccgacauguca         auag  g
u      cu   g   c            ---------    ag 

>ssc-let-7e (-37.00)   [ssc-let-7e:10-31]

gcccc   cU   G                U  ----g a  a 
     ggg  GAG UAGGAGGUUGUAUAGU ga     g gg c
     |||  ||| |||||||||||||||| ||     | ||  
     ccc  uuc auccuccggcauauca cu     c cc a
---ga   cu   g                -  agagg a  c 

>ssc-let-7g (-34.70)   [ssc-let-7g:4-25]

ggcU        A            ugagg    -a  a    a 
    GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
    |||||||| ||||||||||||     ||||  || ||||  
    uuccguca cggacaugucaa     uaga  ac augg c
---g        c            -----    gg  -    c 

>ssc-mir-378 (-49.70)   [ssc-miR-378:49-70]

--    c    g  c              ugu      ccu 
  ccac cagg cu cugacuccaggucc   guguug   g
  |||| |||| || ||||||||||||||   ||||||    
  ggug gucC GA GACUGAGGUUCAGG   CAcgau   g
ga    c    G  A              --U      aaa 

>ssc-mir-133b (-37.90)   [ssc-miR-133b:47-69]

-----      c        ca  c  a      u  g      
     ccugcu uggcuggu  aa gg accaag cc ucuuc 
     |||||| ||||||||  || || |||||| || |||| c
     ggacga AUCGACCA  UU CC UGGUUU gg agagu 
ggucg      U        AC  C  C      -  -      

>ssc-mir-29a (-33.54)   [ssc-miR-29a:52-74]

    uuagagg            uuu       c    ucaa 
cccc       augacugauuuc   ugguguu agag    u
||||       ||||||||||||   ||||||| ||||    a
gggg       uAUUGGCUAAAG   ACCACGA UCuu    u
    uuaguaa            UCU       -    uuaa 

>ssc-mir-30d (-28.80)   [ssc-miR-30d:8-31]

-----cu  u  U         CCC           gua  ac 
       gu gu GUAAACAUC   GACUGGAAGCU   ag  a
       || || |||||||||   |||||||||||   ||   
       ca cg cguuuguag   cugacuuucga   uc  u
ucucagc  c  u         --a           --a  ga 

>ssc-mir-30e (-45.90)   [ssc-miR-30e-5p:9-32] [ssc-miR-30e-3p:51-72]

--u     a            UU           g ga  c 
   uugcc cUGUAAACAUCC  GACUGGAAGCU u  gg g
   ||||| ||||||||||||  ||||||||||| |  ||  
   gacgg GACAUUUGUAGG  CUGACUUUCga g  cc u
ucg     C            --           g ac  u 

>ssc-mir-199a (-37.10)   [ssc-miR-199a-5p:10-32] [ssc-miR-199a-3p:51-72]

-   c   aaC       U        C   ------     g 
 ccc gcc   CCAGUGU CAGACUAC UGU      UCagg g
 ||| |||   ||||||| |||||||| |||      |||||  
 ggg cgg   GGUUACA GUCUGAUG ACA      agucu g
c   u   AUU       C        -   ugugua     c 

>ssc-mir-128-2 (-39.90)   [ssc-miR-128:49-69]

--        a          agg      cc    g gag 
  gcaguggg aggggggccg   cacugu  gaga u   u
  |||||||| ||||||||||   ||||||  |||| |    
  ugucaucc UUUCUCUGGC   GUGACA  CUcu g   a
ug        c          CAA      --    g acg 

>ssc-mir-191 (-37.30)   [ssc-miR-191:9-31]

--ac      C          C  AA       uu  -  c 
    agcggg AACGGAAUCC AA  GCAGCUG  gu cu c
    |||||| |||||||||| ||  |||||||  || ||  
    ucgucc uugcuuuagg uu  cgucgac  ua ga a
ucuc      c          -  ca       cu  c  g 

>ssc-mir-499 (-36.82)   [ssc-miR-499:15-35]

u   c       cgUUA        A          acucc 
 ggg gggcggc     AGACUUGC GUGAUGUUUa     u
 ||| |||||||     |||||||| ||||||||||     c
 ccc uucgucg     ucugaacg cacuacaagu     u
-   -       ---ug        a          gcacc 

>ssc-mir-320 (-49.60)   [ssc-miR-320:43-65]

gc       ---------         uu       c      g 
  uccccuc         cgccuucuc  cccgguu uucccg a
  |||||||         |||||||||  ||||||| ||||||  
  aggggag         GCGGGAGAG  GGGUCGA AAgggc g
-c       aaggaaaAA         UU       A      u 

>ssc-mir-143 (-41.80)   [ssc-miR-143:49-69]

g  c   ag  g   g         g      u  -  ag 
 uc ccc  cc gag ugcagugcu caucuc gg uc  c
 || |||  || ||| ||||||||| |||||| || ||   
 ag ggg  gg CUC AUGUCACGA GUAGAG cu ag  u
-  a   aa  g   G         A      U  g  gg 

>ssc-mir-423 (-40.10)   [ssc-miR-423-5p:10-32] [ssc-miR-423-3p:46-68]

-----    u            -AG   G    A     cua 
     aagu aggcUGAGGGGC   AGA CGAG CUUUu   u
     |||| ||||||||||||   ||| |||| |||||   u
     uucg ucUGACUCCCCG   UCU GCUC GAaaa   u
caucc    u            GAG   G    -     ccu 

>ssc-mir-151 (-45.30)   [ssc-miR-151-5p:12-32] [ssc-miR-151-3p:48-69]

---uu      c            CA          c ucu 
     uuccug ccUCGAGGAGCU  CAGUCUAGUa g   c
     |||||| ||||||||||||  |||||||||| |    
     agggac GGAGUUCCUCGA  GUCAGAUCau c   a
cugcu      A            -A          c ccu 

>ssc-mir-10a (-26.69)   [ssc-miR-10a:9-30]

---u        A    G     C          uaaggaa 
    cuguauaU CCCU UAGAU CGAAUUUGUg       u
    |||||||| |||| ||||| ||||||||||        
    gauguaua gggg aucua gcuuaaacac       u
aguu        a    -     u          ugguguu 

>ssc-mir-10b (-31.60)   [ssc-miR-10b:10-31]

-- u        A    G     C          -ug  au 
  g cuauauaU CCCU UAGAA CGAAUUUGUg   gu  c
  | |||||||| |||| ||||| ||||||||||   ||   
  c gguauaua gggg aucuu gcuuagacac   ua  c
ag u        a    -     a          uga  ca 

>ssc-mir-486 (-40.40)   [ssc-miR-486:46-67]

-----gcu        a    c       -  cucu     cc 
        ggggcuuc gggc agcucgg ac    gaccu  c
        |||||||| |||| ||||||| ||    |||||  u
        ucccgGAG CCCG UCGAGUC UG    CUggg  g
cgugucac        C    -       A  --UC     ca 

>ssc-mir-152 (-38.70)   [ssc-miR-152:45-65]

-----------c              g  a    cc    cgg   c 
            ggcccagguucugu au cacu  gacu   gcu u
            |||||||||||||| || ||||  ||||   |||  
            ccgGGUUCAAGACA UA GUGA  CUga   cga g
uuccaggcaggc              G  C    --    ---   g 

>ssc-mir-103-2 (-28.50)   [ssc-miR-103:47-69]

----u  g      --   u  u           ----    ua 
     gu cuuuca  gcu cu uacagugcugc    cuug  g
     || ||||||  ||| || |||||||||||    ||||  c
     ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
agaau  a      AU   -  C           Aacu    uu 

>ssc-mir-181a-2 (-38.70)   [ssc-miR-181a:10-33]

----         A   U      CU       A    ggga 
    acuccaagg ACA UCAACG  GUCGGUG GUUu    u
    ||||||||| ||| ||||||  ||||||| ||||    u
    ugggguucc ugu aguugc  cagccac caaa    u
uucu         a   c      --       -    aaag 

>ssc-mir-181b-1 (-33.30)   [ssc-miR-181b:11-34]

-       aucAA         CUG          gaa  g 
 ggucaca     CAUUCAUUG   UCGGUGGGUU   cu u
 |||||||     |||||||||   ||||||||||   ||  
 ccggugu     guaaguaac   agucacucga   ga g
c       -caac         --a          aca  u 

>ssc-mir-181d (-30.10)   [ssc-miR-181d:9-32]

----     aucA         G UG          g  a a g 
    ucaca    ACAUUCAUU U  UCGGUGGGUU ug g c g
    |||||    ||||||||| |  |||||||||| || | |  
    ggugu    uguaaguag g  agccacccag ac c g a
gguc     -cac         g --          -  - - g 

>ssc-mir-27b (-41.30)   [ssc-miR-27b*:10-32] [ssc-miR-27b:52-72]

-acg                  AUUG        ugac     
    aggugcAGAGCUUAGCUG    GUGAACAg    uggu 
    ||||||||||||||||||    ||||||||    ||| u
    uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
gaag                  --GA        --uc     

>ssc-mir-340 (-22.60)   [ssc-miR-340:13-34]

uaccugg    aU       -CAA      U    g     ug 
       ugug  UAUAAAG    UGAGAC GAUU ucaua  u
       ||||  |||||||    |||||| |||| |||||  c
       auac  auauuuc    acucug cuag ggugu  g
-------    cg       auug      c    -     uu 

>ssc-mir-24-2 (-27.92)   [ssc-miR-24:52-73]

gacc  cc    g  g   a         ua     ucuca 
    cg  cucc gu ccu cugagcuga  ucagu     u
    ||  |||| || ||| |||||||||  |||||     u
    gc  gagG CA GGA GACUUGACU  GGUca     u
---a  -u    A  A   C         -C     cacau 

>ssc-mir-23b (-37.74)   [ssc-miR-23b:50-71]

cuc       u   --          -  c      gugacu 
   uggcugc ugg  guuccuggca ug ugauuu      u
   ||||||| |||  |||||||||| || ||||||       
   accgacg ACC  UAGGGACCGU AC ACUAaa      a
--c       c   AU          U  -      auuaga 

>ssc-mir-193a (-49.10)   [ssc-miR-193a-5p:16-37] [ssc-miR-193a-3p:50-71]

gcg  a             U     CG   G  A    ggu 
   gg gcugagggcUGGG CUUUG  GGC AG UGAg   g
   || ||||||||||||| |||||  ||| || ||||    
   cc cggcuccUGACCC GAAAC  CCG UC Acuu   u
---  -             U     AU   G  A    ggu 

>ssc-mir-99a (-39.60)   [ssc-miR-99a:12-33]

-c          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu uggguaucu  gcu gaacac gc   g
gu          c         uc   c      -  cag 

>ssc-mir-125a (-33.80)   [ssc-miR-125a:11-33]

-----g   ucu a UC  UG   C    UA        ----  a 
      gcc   g g  CC  AGA CCUU  ACCUGUGa    gg c
      |||   | |  ||  ||| ||||  ||||||||    ||  
      cgg   c c  gg  ucu ggag  uggacacu    cc a
ggccug   --u - ga  gu   u    --        ggga  u 

>ssc-mir-1308 (-20.90)   [ssc-miR-1308:41-66]

-------ga  -     a    g     ccaaaaua    -    uca 
         gg gagaa ucua ucacu        gaac acca   g
         || ||||| |||| |||||        |||| ||||    
         cc uuCUU AGAU GGUGA        CUUG UGGU   G
caagaccgg  g     A    -     --------    G    UAC 

>ssc-mir-345 (-48.40)   [ssc-miR-345-5p:12-32] [ssc-miR-345-3p:49-69]

--           G U          C   U   ug g u 
  aacccaggucu C GACUCCUAGU CAG GCU  u a g
  ||||||||||| | |||||||||| ||| |||  | |  
  uuggguccgGA G CUGGGGAUCA GUC Cgg  g u g
gu           G U          A   C   gu g c 

>ssc-mir-148b (-30.00)   [ssc-miR-148b:49-70]

---a       ug         u  a    ca    gugg u 
    uuugagg  aaguucugu au cacu  ggcu    c c
    |||||||  ||||||||| || ||||  ||||    | u
    aagcucU  UUCAAGACA UA GUGA  CUga    g c
ucga       GU         C  C    --    --aa u 

>ssc-mir-885 (-48.40)   [ssc-miR-885-5p:19-40] [ssc-miR-885-3p:51-71]

cacucggc   c     c           A  -         cu 
        ccg gcucu UCCAUUACACU CC CUGCCUCUu  c
        ||| ||||| ||||||||||| || |||||||||   
        ggc cgaga AGGUGAUGUGG GG GACGGAgag  c
--------   a     U           -  C         ca 

>ssc-mir-365-2 (-26.60)   [ssc-miR-365:47-68]

--------aaa        ac   c       -----    u   u 
           aaugaggg  uuu aggggca     gcug guu u
           ||||||||  ||| |||||||     |||| |||  
           uUAUUCCU  AAA UCCCCGU     ugac cag c
ugacguucuug        AA   -       AAUac    u   u 

>ssc-mir-365-1 (-27.50)   [ssc-miR-365:54-75]

-c    ggaaaaug     c           ----   -   uuu 
  gcag        aggga uuuugggggca    gau gug   c
  ||||        ||||| |||||||||||    ||| |||   c
  cguU        UUCCU AAAAUCCCCGU    cua cac   a
cu    -------A     A           AAUa   u   cuu 

>ssc-mir-98 (-31.30)   [ssc-miR-98:4-25]

gggU                 U    ---------      aggg 
    GAGGUAGUAAGUUGUAU GUUg         uggggu    a
    ||||||||||||||||| ||||         ||||||    u
    uuucaucauucaacaua caau         accccg    u
----                 u    agaagauua      gauu 

>ssc-mir-664 (-24.90)   [ssc-miR-664-5p:12-34] [ssc-miR-664-3p:49-72]

gaacauugaaaC     A     AG   U         aa 
            AGGCU GGAGA  UGA UGGAUagaa  u
            ||||| |||||  ||| |||||||||  g
            UCCGA CCUCU  AUU ACUUAUcuu  g
-aaagaaaaACA     C     --   U         au 

>ssc-mir-92a-2 (-35.80)   [ssc-miR-92a:51-72]

cu   a    ug   g     uu  u   u     guggu 
  uuc uccg  ggu gggau  gu gca uacuu     g
  ||| ||||  ||| |||||  || ||| |||||      
  aag aggU  CCG CCCUG  CA CGU AUgaa     u
-a   a    GU   G     UU  -   U     auaug 

>ssc-mir-92a-1 (-36.20)   [ssc-miR-92a:48-69]

-----cu   uac            c   u           uu 
       uuc   acagguugggau ggu gcaaugcugug  u
       |||   |||||||||||| ||| |||||||||||   
       gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gugguuu   --u            U   -           gu 

>ssc-mir-92b (-50.02)   [ssc-miR-92b:51-72]

-gc    g     ga       c            uucuu 
   gggc ggagg  cgggacg ggugcaguguug     u
   |||| |||||  ||||||| ||||||||||||     c
   cccg CCUCC  GCCCUGC UCACGUUAUaac     c
ccc    g     -G       -            cgucc 

>ssc-mir-192 (-31.69)   [ssc-miR-192:11-31]

gca  g g  C         -     A       ugcucuc 
   ca g cu UGACCUAUG AAUUG CAGCCag       a
   || | || ||||||||| ||||| |||||||        
   gu u ga acuggauac uuaac gucgguc       u
---  a g  c         c     c       uccccuc 

>ssc-mir-100 (-25.30)   [ssc-miR-100:16-37]

aggccuguugc    A   CG    UC   A      c  au 
           caca ACC  UAGA  CGA CUUGUG ug  a
           |||| |||  ||||  ||| |||||| ||   
           gugu ugg  aucu  guu gaacac ac  g
-----gugucu    a   au    gu   c      -  gu 

>ssc-mir-208b (-30.70)   [ssc-miR-208b:45-66]

-------        g          c   cg        cu 
       cucucagg aagcuuuuug ucg  uuauguuu  c
       |||||||| |||||||||| |||  ||||||||  a
       gggagucU UUUGGAAAAC AGC  AAUAuaag  u
gugagac        G          A   AG        cc 

>ssc-mir-374a (-39.40)   [ssc-miR-374a:10-31] [ssc-miR-374a*:40-61]

------------   c   c                        u 
            cau ggc aUUAUAAUACAACCUGAUAAGUGu a
            ||| ||| ||||||||||||||||||||||||  
            gug cug UAAUGUUAUGUUGGACUAUUCacg c
ccguauauauau   u   U                        a 

>ssc-mir-374b (-33.40)   [ssc-miR-374b:9-30]

--------------u    ug AU             C       c 
               cgga  g  AUAAUACAACCUG UAAGUGu c
               ||||  |  ||||||||||||| |||||||  
               gccu  u  uauuauguuggac auucacg u
gcucucgguaucugu    gu ac             u       a 

>ssc-mir-34c (-30.10)   [ssc-miR-34c:13-35]

---     ag     A   A    A     C      C ga 
   agucu  uuacu GGC GUGU GUUAG UGAUUG u  u
   |||||  ||||| ||| |||| ||||| |||||| |   
   uuaga  aaugg ccg caca caauc acuaac a  a
ggu     aa     a   g    c     -      c aa 

>ssc-mir-425 (-32.40)   [ssc-miR-425-5p:12-34] [ssc-miR-425-3p:53-74]

a  ug  uu  AAU       U  C    ----    Ag   g 
 ag  cu  gg   GACACGA CA UCCC    GUUG  ugg c
 ||  ||  ||   ||||||| || ||||    ||||  |||  
 uc  ga  CC   CUGUGCU GU AGGG    cgau  acc a
-  gu  -C  -GC       -  A    CUAc    ga   c 

>ssc-mir-142 (-38.90)   [ssc-miR-142:12-32]

-     g   c           A         Uaa ag a 
 gugca uca cCAUAAAGUAG AAGCACUAC   c  c c
 ||||| ||| ||||||||||| |||||||||   |  |  
 caugu agu gguauuucauc uuugugaug   g  g u
u     g   a           c         -ug ga g 

>ssc-mir-424 (-40.80)   [ssc-miR-424:13-34] [ssc-miR-424*:50-70]

uc       a  C      AA            Agg   uu 
  cgagggg ug AGCAGC  UUCAUGUUUUGA   gcu  a
  ||||||| || ||||||  ||||||||||||   |||   
  gcucccc aU UCGUCG  GAGUGCAAAACu   ugg  a
-c       c  A      CG            ---   ua 

>ssc-mir-130b (-35.00)   [ssc-miR-130b:50-71]

     c    ca       cc         a  guggg  a 
gccug cuga  cucuuuc  uguugcacu cu     cc c
||||| ||||  |||||||  ||||||||| ||     ||  
cggac gacU  GGGAAAG  GUAACGUGA ga     gg u
     u    AC       UA         C  ----a  g 

>ssc-mir-196b (-32.50)   [ssc-miR-196b:14-35]

    uc      uU       U  C           ucca 
cugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
||||  ||||||  ||||||| || |||||||||||     
gacu  ucauua  uccguca ag acgacagcucu    c
    --      cu       c  c           cuuu 

>ssc-mir-542 (-35.30)   [ssc-miR-542-5p:12-32] [ssc-miR-542-3p:49-70]

-c       g c    GG    UCA         a -  c 
  cucagac u UCGG  AUCA   UGUCACGAg g ac a
  ||||||| | ||||  ||||   ||||||||| | ||  
  gggucug A AGUC  UAGU   ACAGUGUuc c ug c
ga       g A    AA    UAG         a g  u 

>ssc-mir-497 (-39.80)   [ssc-miR-497:8-28]

       - -----    G    C         U  --   ac 
cccgccc C     AGCA CACA UGUGGUUUG ac  ggc  u
||||||| |     |||| |||| ||||||||| ||  |||   
ggguggg g     uugu gugu acaccaaac ug  ccg  g
       a cgaga    g    c         c  ca   gu 

>ssc-mir-450b (-22.40)   [ssc-miR-450b:9-30]

--------        UUU     U       UG -    gua 
        aaaauuau   UGCAA AUGUUCC  A AUAu   a
        ||||||||   ||||| |||||||  | ||||   u
        uuuugaua   acguu uacaagg  u uaug   a
uagcuaug        ccu     u       gu a    aau 

>ssc-mir-195 (-38.90)   [ssc-miR-195:16-36]

cagcccc     cucUA         -A          ccg   g 
       ccugg     GCAGCACAG  AAUAUUGGCa   ggc g
       |||||     |||||||||  ||||||||||   ||| a
       ggacc     cgucguguc  uuaugaccgu   cug g
-----ac     ----c         gg          ---   a 

>ssc-mir-331 (-38.92)   [ssc-miR-331-5p:15-35] [ssc-miR-331-3p:51-71]

uugu       u        U    U       AU ccaga 
    uuggguu guUCUAGG AUGG CCCAGGG  c     u
    ||||||| |||||||| |||| |||||||  |     c
    aauccaa cAAGAUCC UAUC GGGUCCC  g     a
----       c        -    C       CG accaa 

>ssc-mir-504 (-45.80)   [ssc-miR-504:10-32]

----g    -            G     A    -A  U   u 
     cugu ugggAGACCCUG UCUGC CUCU  UC gua g
     |||| |||||||||||| ||||| ||||  || |||  
     gaca acccuuugggac ggacg gagg  ag cau c
cggga    c            g     c    ga  u   u 

>ssc-mir-127 (-36.70)   [ssc-miR-127:53-74]

aucg   ucu      ugcug         g  c      --  a 
    cug   ccagcc     aagcucaga gg ucugau  uc g
    |||   ||||||     ||||||||| || ||||||  || a
    ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
----   --u      -----         G  U      cu  a 

>ssc-mir-361 (-32.10)   [ssc-miR-361-5p:6-27] [ssc-miR-361-3p:45-68]

---------     UU         --U  A    U    auaa 
         ggagc  AUCAGAAUC   CC GGGG ACuu    u
         |||||  |||||||||   || |||| ||||    u
         cuuCG  UAGUCUUAG   GG CCCC ugaa    u
cuccuccuc     UU         UGU  A    C    aaag 

>ssc-mir-1277 (-35.70)   [ssc-miR-1277:49-70]

u    uc     u            g        ug au 
 agcc  ccaaa auauauauauau uacguaug  u  a
 ||||  ||||| |||||||||||| ||||||||  |   
 uugg  gguUU UAUGUAUAUAUA AUGCAUau  a  u
u    gu     U            G        gu ag 

>ssc-mir-1307 (-30.44)   [ssc-miR-1307:49-70]

------      aucu       -a  u  a   gc   ucuaug 
      cuacca    cgaccgg  cc cg ccg  ucg      u
      ||||||    |||||||  || || |||  |||       
      gaugGU    GCUGGCU  GG GC GGC  Agc      u
cggaua      ----       GC  U  -   UC   uaaccg 

>ssc-mir-1306 (-31.60)   [ssc-miR-1306-5p:8-29] [ssc-miR-1306-3p:48-68]

---------    -c       UCCCCU  A        guga   a 
         gucu  caCCACC      GC AACGUCCA    ugc g
         ||||  |||||||      || ||||||||    |||  
         cagG  GUGGUGG      CG UUGCAggu    aug a
caagccgga    UA       ---UCU  G        ---a   g 

>ssc-mir-339 (-39.80)   [ssc-miR-339:11-32]

----    c   c U C   U    C          uua c 
    gcag cgc g C CUG CCUC AGGAGCUCAC   c u
    |||| ||| | | ||| |||| ||||||||||   |  
    cguc gug c g gac ggag uccucgagug   g u
ucuc    u   c c a   c    c          ccg g 

>ssc-mir-532 (-29.40)   [ssc-miR-532-5p:16-37] [ssc-miR-532-3p:52-73]

uugcuuu       a  U      A    A   CC  ugg a 
       cucucuu CA GCCUUG GUGU GGA  GU   c u
       ||||||| || |||||| |||| |||  ||   |  
       gggaggA GU CGGAAC CACA CCU  ca   g c
------c       C  U      C    C   CC  uaa u 

>ssc-mir-222 (-38.50)   [ssc-miR-222:51-74]

ug  c   au              -     auc   ucau 
  cc uca  ggcucaguagccag uguag   cug    u
  || |||  |||||||||||||| |||||   |||    u
  gg agu  CUGGGUCAUCGGUC ACAUC   gac    g
--  u   CU              U     GAu   uaau 

>ssc-mir-676 (-30.60)   [ssc-miR-676:46-66]

-------      u     uu      c     uc    aauu 
       aacgcg gacuc  caaucu aggac  gcau    a
       |||||| |||||  |||||| |||||  ||||     
       uugcgu UUGAG  GUUGGA UCCUG  Cgua    g
cgggucu      c     UU      A     -C    agac 

>ssc-mir-342 (-34.30)   [ssc-miR-342:48-72]

----       -      --ua      acuga      ugg g 
    aagguga gggugc    ucugug     gggaca   c c
    ||||||| ||||||    ||||||     ||||||   | a
    uuccACU CCCACG    AGACAC     CUCUgu   g u
ccgg       G      CUAA      ----A      caa a 

>ssc-mir-708 (-35.80)   [ssc-miR-708:6-28]

---     A           A     C  G ----g   aau 
   cccuc AGGAGCUUACA UCUAG UG G     gug   g
   ||||| ||||||||||| ||||| || |     |||   a
   gggag ucuucgagugu agauc ac c     cac   c
gac     a           c     a  g aagua   guu 

>ssc-mir-432 (-40.00)   [ssc-miR-432:7-27]

-        U     UA       G     a   uu   uu 
 uccaggUC UGGAG  GGUCAUU GGUgg ucc  uau  c
 |||||||| |||||  ||||||| ||||| |||  |||   
 agguucgg accuc  ucgguag ucacc ggg  gua  c
g        u     -c       g     -   -u   uc 

>ssc-mir-935 (-47.10)   [ssc-miR-935:50-72]

ggc  a      a             ccc  c   caucc 
   gc ggcggc guggcgggagcgg   cu ggc     u
   || |||||| |||||||||||||   || |||      
   cg ccgcCG CAUCGCCUUCGCC   GA Ccg     c
-cu  -      C             AUU  C   ucugc 

>ssc-mir-202 (-43.10)   [ssc-miR-202:13-33]

-  c       cc         A           g   gu 
 cg cguuccg  UUCCUAUGC UAUACUUCUUU agg  c
 || |||||||  ||||||||| ||||||||||| |||   
 gc gcggggc  aaggguacg auguggagaag ucc  u
a  a       ca         g           -   gg 

>ssc-mir-328 (-51.31)   [ssc-miR-328:47-68]

--          -------     ga     u     a aaa  g 
  ggagcggggg       ggcag  ggggc caggg g   gu u
  ||||||||||       |||||  ||||| ||||| |   ||  
  ccuugccccc       CCGUC  UCCCG GUCcc c   cg g
gu          UGCCUUC     UC     -     - -gc  u 

>ssc-mir-19b-2 (-36.90)   [ssc-miR-19b:51-73]

--                -  -      uuu    g      u 
  uacaguuaguuuugca gg uuugca   cagc uaugua g
  |||||||||||||||| || ||||||   |||| ||||||  
  guguuAGUCAAAACGU CC AAACGU   GUcg guauau u
ua                A  U      ---    -      g 

>ssc-mir-19b-1 (-34.42)   [ssc-miR-19b:52-74]

cuguu                 -  -      uc    ugugu 
     cuaugguuaguuuugca gg uuugca  cagc     g
     ||||||||||||||||| || ||||||  ||||     a
     ggugucAGUCAAAACGU CC AAACGU  GUcg     u
-----                 A  U      --    ucuua 

>ssc-mir-574 (-57.10)   [ssc-miR-574:51-72]

uggg            a u                 ug  gc 
    ugcgggcgugug g gugugugugugagugug  uc  u
    |||||||||||| | |||||||||||||||||  ||   
    acgcccgcACAC C CACACACGUACUCGCAC  gg  c
----            - -                 cu  gc 

>ssc-mir-1839 (-20.40)   [ssc-miR-1839:11-32]

--ccuaaaugaaAA      U   AC        uuug a 
              GGUAGA AGA  AGGUCUUG    c a
              |||||| |||  ||||||||    | g
              ccaucu uuu  uccagaac    g a
cacauuaacgacaa      -   ca        uuaa u 

>ssc-mir-628 (-32.00)   [ssc-miR-628:14-35]

guguca      cA  -   A   A             aaag 
      cuuccu  UG CUG CAU UUUACUAGAGGgu    u
      ||||||  || ||| ||| |||||||||||||     
      gaaggg  gc gac gug gaaugaucuucca    u
-----g      aa  u   g   a             acaa 

>ssc-mir-1285 (-20.50)   [ssc-miR-1285:49-72]

gcugauc  u  -    a  g   c    aaua   ---a   u 
       ag ag uggg uc cgc ugug    gcc    cug a
       || || |||| || ||| ||||    |||    ||| c
       uc uc GCCC AG GCG AUAC    CGG    gac u
---guuu  -  U    C  A   -    --AA   GUCc   c 

>ssc-mir-335 (-38.90)   [ssc-miR-335:15-36]

cuuu    c        A         C        u  gu 
    uggg gggggUCA GAGCAAUAA GAAAAAUG uu  c
    |||| |||||||| ||||||||| |||||||| ||   
    acuc ccuccagu cucguuauu cuuuuugc aa  a
----    u        c         a        c  au 

>ssc-mir-500 (-32.50)   [ssc-miR-500:48-68]

----ccc     -u         uac ug    agag   ugu 
       cucuc  aauccuugc   c  ggug    ugc   g
       |||||  |||||||||   |  ||||    |||   u
       gagag  UUAGGAACG   G  CCAC    acg   g
cgagagu     UC         --- GU    -GUA   uaa 

>ssc-mir-324 (-34.70)   [ssc-miR-324:12-34]

---    gc     C   U C   A     U   U  gaag 
   cuau  cuccc GCA C CCU GGGCA UGG GU    c
   ||||  ||||| ||| | ||| ||||| ||| ||     
   gaug  ggggg cgu g gga cccgu acc ca    u
ucu    uu     u   c u   c     c   -  gagg 

>ssc-mir-769 (-38.80)   [ssc-miR-769:52-74]

ugc       c ug       u   u   g    gu  ug 
   gcucuga c  agaccuc ggg ucu agcu  ga  u
   ||||||| |  ||||||| ||| ||| ||||  ||  u
   ugggacU G  UCUGGGG CUC AGG UCga  cu  g
---       U GU       U   U   G    ac  uc 

>ssc-mir-129 (-33.80)   [ssc-miR-129:53-74]

cuu       -       c   cu      ---     acau 
   cgugaau cuuuuug ggu  gggcuu   gcugu    a
   ||||||| ||||||| |||  ||||||   |||||     
   gcgcuUA GAAAAAC CCA  CCCGAA   cgaua    a
--g       C       C   UU      ggc     acuc 

>ssc-mir-455 (-37.80)   [ssc-miR-455:50-70]

--   c ug  g          u      a   c   gaa 
  ugg g  ag guaugugccu uggacu cau gug   g
  ||| |  || |||||||||| |||||| ||| |||    
  acu c  uC CAUAUACGGG ACCUGA Gua cac   c
ga   c gu  A          U      C   c   gac 

>ssc-mir-505 (-40.10)   [ssc-miR-505:50-71]

--  a u   u           g    a        -u  g 
  gc c cag gggggagccag aagu uugauguu  cu c
  || | ||| ||||||||||| |||| ||||||||  ||  
  cg g guc CUCCUUUGGUC UUCA AACUgcga  gg c
ua  a -   U           G    C        uu  a 

>ssc-mir-125b-1 (-35.80)   [ssc-miR-125b:9-30]

----c   u   UC  UG   C           Au     c 
     cuc cag  CC  AGA CCUAACUUGUG  guuua c
     ||| |||  ||  ||| |||||||||||  ||||| g
     gag guc  gg  ucu ggauugggcac  uaaau u
gugcc   c   ga  gu   c           -c     u 

>bhv1-mir-B1 (-41.30)   [bhv1-miR-B1:2-22]

   -     -AU   ------    AC   -   -c   -    u      -c  c  g 
gAC ACGAG   CUG      GACG  GAG guc  ucg gcgu ggcggc  gc gg a
||| |||||   |||      ||||  ||| |||  ||| |||| ||||||  || || a
cug uguuc   gac      cugu  cuc cgg  agc cgcg ccgcug  cg cc c
   a     gac   acgaaa    aa   a   ac   a    c      cc  a  g 

>bhv1-mir-B2 (-49.80)   [bhv1-miR-B2:1-20]

       C  -U   G  ACG    --         -a   -a   a 
GCCGGCG AU  GUG AG   ggca  gcgcggacg  gcu  cgg g
||||||| ||  ||| ||   ||||  |||||||||  |||  |||  
cggccgc ua  cac uc   ucgu  cgcgccugc  cgg  gcc a
       a  uc   g  --g    ag         ac   ga   g 

>bhv1-mir-B3 (-29.70)   [bhv1-miR-B3:48-67]

    ----    -   aa  c  aa  u    a   u 
gcca    cggc cgc  cg gg  ca gcgc cgc g
||||    |||| |||  || ||  || |||| ||| g
cGGU    GUCG GCG  GC CC  gu cgcg gcg a
    AGUA    U   --  A  ac  -    -   c 

>bhv1-mir-B4 (-42.70)   [bhv1-miR-B4:8-28]

       C C   A   AGA   U       ---a      
gcgcggc G GUG UGU   GGG GACGcga    cggca 
||||||| | ||| |||   ||| |||||||    |||| g
cgcgccg c cac gcg   ccu cugcgcu    gccgc 
       a -   a   --g   u       cagg      

>bhv1-mir-B5 (-38.80)   [bhv1-miR-B5:6-29]

    aC       ------    G  G          ggucg 
ucgg  UCGGAGG      GCUC GA GACGACUCuu     g
||||  |||||||      |||| || ||||||||||      
aguc  agccucc      cggg cu cugcugagaa     a
    -c       acgacu    g  g          gacug 

>bhv1-mir-B6 (-64.20)   [bhv1-miR-B6:11-33] [bhv1-miR-B6*:53-75]

          A  UG    A   G  GA       ---   g 
cgcggagggc AG  CCCG CGC GG  ACGUGgc   ggc g
|||||||||| ||  |||| ||| ||  |||||||   |||  
gcgccuccCG UC  GGGC GCG CC  UGCgccg   ccg a
          G  CU    C   G  UC       cga   c 

>bhv1-mir-B7 (-62.50)   [bhv1-miR-B7:51-73]

          c  ga        c  ag   c    c     
cgcggagggc ag  cccggcgc gg  acg ggcg uggc 
|||||||||| ||  |||||||| ||  ||| |||| ||| g
gcgccucccg UC  GGGCUGCG CC  UGC Ccgc gccu 
          U  AC        C  CU   A    c     

>bhv1-mir-B8 (-33.50)   [bhv1-miR-B8-5p:7-28] [bhv1-miR-B8-3p:43-65]

       GCG   -A      C       ggaua 
cccccgC   GGC  AAAAAU CAAUGGC     a
|||||||   |||  |||||| |||||||      
ggGGGCG   CCG  UUUUUA GUUAUcg     u
       --A   CG      U       agagc 

>bhv1-mir-B9 (-25.82)   [bhv1-miR-B9:47-67]

  c u    c        -aaa  u      guuua 
gg c ccag guucgcac    gc caauaa     u
|| | |||| ||||||||    || ||||||     a
cc g gGUC CGAGCGUG    CG GUUauu     u
  a -    C        AGCC  -      auaua 

>mmu-mir-2134-5 (-27.60)   [mmu-miR-2134:5-23]

guu   CU    AAAC    U      gga 
   cGU  UGGG    GGGG GCggcc   a
   |||  ||||    |||| ||||||    
   gca  gccc    cucc cgccgg   a
---   cu    -gcu    -      ggg 

>mmu-mir-2134-6 (-27.60)   [mmu-miR-2134:5-23]

guu   CU    AAAC    U      gga 
   cGU  UGGG    GGGG GCggcc   a
   |||  ||||    |||| ||||||    
   gca  gccc    cucc cgccgg   a
---   cu    -gcu    -      ggg 

>zma-MIR156l (-60.80)   [zma-miR156l:2-21] [zma-miR156l*:68-89]

--        -    -         a      g cgga       cgg 
  gUGACAGA AGAG AGUGAGCAC cggccg g    acggcac   c
  |||||||| |||| ||||||||| |||||| |    |||||||    
  CACUGUCU UCUC UCACUCGug gccggc c    ugccgug   g
cC        A    G         c      g ----       uag 

>zma-MIR159e (-58.00)   [zma-miR159e*:2-22] [zma-miR159e:106-126]

-- C       -G   C   U  UCga    c    c  u   a     -    agcgcaaguccg 
  g AGCUCCU  CAG AUC GU    ggcu gccg gu cug ugauc cggc            g
  | |||||||  ||| ||| ||    |||| |||| || ||| ||||| ||||            c
  C UCGAGGG  GUU UGG UA    ccgg cggc cg ggc gcugg gccg            g
cA C       AA   -   U  --ug    u    -  c   g     a    gcggcggcagcg 

>zma-MIR159f (-95.00)   [zma-miR159f*:2-22] [zma-miR159f:194-214]

--        UC   U     U  ag  u  uuc  aa    -   u c   g    u     guuc    uau         uccauguuugcgugucuucgagagga 
  gGAGCUCC  UCA UCCAA GA  gg cc   cg  gggu ggu c gcu cucg ucaug    ccac   ccuaucuca                          a
  ||||||||  ||| ||||| ||  || ||   ||  |||| ||| | ||| |||| |||||    ||||   |||||||||                           
  UCUCGAGG  AGU AGGUU cu  cc gg   gu  ccca cca g cga gagc aguac    ggug   ggauagagu                          g
cG        GA   U     U  cg  -  -uc  gc    g   c u   g    c     guuu    uuc         uuuccgcugguguccuuagagaaggc 

>zma-MIR159g (-105.00)   [zma-miR159g*:54-74] [zma-miR159g:231-251]

aguuugauucacuagaccugauccccuagacuagacggucuggucuuaag    U           A    UAAa        cu  -u   -   ua     g    u     guuc    ugu        aucagagagagagaagauc 
                                                  gcgG GCUCCCUUCAC CCAA    cggucgau  ga  ggg ugg  cagcu cucg ucaug    ccac   cccaucuc                   a
                                                  |||| ||||||||||| ||||    ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   ||||||||                    
                                                  cGUC UGAGGGAAGUG GGUU    gccaguug  cu  ccc gcu  gucga gagc aguac    ggug   ggguagag                   u
--------------------------------------------------    U           A    Uguc        --  uc   u   cc     g    c     guuu    uuc        uucguagagagcgagagag 

>zma-MIR159h (-94.10)   [zma-miR159h*:2-22] [zma-miR159h:179-199]

--  U           A    UAAa        cu  -u   -   ua     g    u     guuc    ugu         ucagagagagagaagauc 
  gG GCUCCCUUCAC CCAA    cggucgau  ga  ggg ugg  cagcu cucg ucaug    ccac   cccaucuca                  g
  || ||||||||||| ||||    ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   |||||||||                   
  UC CGAGGGAAGUG GGUU    gccaguug  cu  ccc gcu  gucga gagc aguac    ggug   ggguagagu                  u
cG  U           A    Uguc        --  uc   u   cc     g    c     guuu    uuc         ucguagagagcgagagag 

>zma-MIR159i (-107.30)   [zma-miR159i*:54-74] [zma-miR159i:231-251]

aguuugauucacuagaccugauccccuagacuagacggucuggucuuaag    U           A    UAAa        cu  -u   -   ua     g    u     guuc    ugu        aucagagagagagaagauc 
                                                  gcgG GCUCCCUUCAC CCAA    cggucgau  ga  ggg ugg  cagcu cucg ucaug    ccac   cccaucuc                   a
                                                  |||| ||||||||||| ||||    ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   ||||||||                    
                                                  cGUC CGAGGGAAGUG GGUU    gccaguug  cu  ccc gcu  gucga gagc aguac    ggug   ggguagag                   u
--------------------------------------------------    U           A    Uguc        --  uc   u   cc     g    c     guuu    uuc        uucguagagagcgagagag 

>zma-MIR159j (-106.70)   [zma-miR159j*:54-74] [zma-miR159j:231-251]

aguuugauucacuagaccugauccccuagacuagacggucuggucuuaag    U           A    UAAa        cu  -u   -   ua     g    u     guuc    ugu         ucagagagagagaagauc 
                                                  gcgG GCUCCCUUCAA CCAA    cggucgau  ga  ggg ugg  cagcu cucg ucaug    ccac   cccaucuca                  g
                                                  |||| ||||||||||| ||||    ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   |||||||||                   
                                                  cGUC CGAGGGAAGUU GGUU    gccaguug  cu  ccc gcu  gucga gagc aguac    ggug   ggguagagu                  u
--------------------------------------------------    U           A    Uguc        --  uc   u   cc     g    c     guuu    uuc         ucguagagagcgagagag 

>zma-MIR159k (-87.40)   [zma-miR159k*:2-22] [zma-miR159k:179-199]

--  U           A    UAAa        cu  -u   -    a  a  g    u     guuc    ugu         ucagagagagagaagauc 
  gG GCUCCCUUCAA CCAA    cggucgau  ga  ggg uggu ca cu cucg ucaug    ccac   cccaucuca                  g
  || ||||||||||| ||||    ||||||||  ||  ||| |||| || || |||| |||||    ||||   |||||||||                   
  UC CGAGGGAAGUU GGUU    gccaguug  cu  ccc gcua gu ga gagc aguac    ggug   ggguagagu                  u
cG  U           A    Uguc        --  uc   u    c  c  g    c     guuu    uuc         ucguagagagcgagagag 

>zma-MIR160g (-43.80)   [zma-miR160g:2-22] [zma-miR160g*:65-85]

--    C       C          a   -   gc    c cgu 
  aUGC UGGCUCC UGUAUGCCAc cau gua  ccaa c   g
  |||| ||||||| |||||||||| ||| |||  |||| |    
  UACG ACCGAGG ACGUGCGgug gug cgu  gguu g   a
uG    A       A          g   u   -a    a ugu 

>zma-MIR164e (-73.90)   [zma-miR164e:2-22] [zma-miR164e*:95-115]

--       -A  A                      uuc    --c       cuc   g 
  gUGGAGA  GC GGACACGUGAGcgaccauccag   cacu   ccgcugg   gcu c
  |||||||  || ||||||||||||||||||||||   ||||   |||||||   ||| u
  CACCUCU  CG CCUGUGUACuugcugguggguu   gugg   ggcggcc   cga g
gC       CC  -                      uga    uuc       -cu   g 

>zma-MIR164f (-58.90)   [zma-miR164f:2-22] [zma-miR164f*:87-107]

--c        C  G         -  c    -aa  -  ----a    u    g a 
   UGGAGAAG AG GCACGUGCU cg cgac   gu cg     agcc uagg c g
   |||||||| || ||||||||| || ||||   || ||     |||| |||| | c
   ACCUCUUC UC CGUGCACga gc gcug   ca gc     ucgg gucc g u
aCA        C  G         c  u    gug  u  gcacg    u    g u 

>zma-MIR164g (-94.60)   [zma-miR164g:2-22] [zma-miR164g*:150-170]

--u        CA            a  cacgcc     --     cgccgccgaucuaccgaccucccaaaccugccuuaugguguggg 
   UGGAGAAG  GGGCACGUGCAg ga      ggagc  acggc                                            g
   ||||||||  |||||||||||| ||      |||||  |||||                                             
   ACCUCUUC  CUCGUGCACguc cu      ccucg  uguug                                            g
aCC        CC            -  ------     au     uagcuucguuguugcugucgauagcgaagguggcugcuggaggu 

>zma-MIR164h (-114.80)   [zma-miR164h:2-22] [zma-miR164h*:198-218]

--         C            aauucauu   u -      -   u     --   gacucacgcaucgccggcgcggcgagcugagcgcgugacacggaaagcagguccgcc 
  gUGGAGAAG AGGGCACGUGUG        cgu c caucga cgg cuggc  gcc                                                         g
  ||||||||| ||||||||||||        ||| | |||||| ||| |||||  |||                                                          
  UACCUCUUC UCCCGUGUACgu        gcg g guagcu gcc ggccg  cgg                                                         c
gC         U            --------   u c      a   -     ac   accgaaacgaagcaccucgaugucaaucggccagcuagccggucgcgcccgcggccg 

>zma-MIR166n (-66.30)   [zma-miR166n*:2-22] [zma-miR166n:75-95]

--       UU      CU  GU            -      cuug   g 
  gGGAUUG  GUCUGG  CG  Gucuccggucga gacggc    ccg c
  |||||||  ||||||  ||  |||||||||||| ||||||    |||  
  CCCUAAC  CGGACC  GC  uagaggccagcu cugucg    ggc g
uU       UU      AG  Uc            g      ---a   c 

>zma-MIR167j (-47.70)   [zma-miR167j:2-22] [zma-miR167j*:89-108]

--            G          aa  aua  u      --   uuc   --   ga 
  aUGAAGCUGCCA CAUGAUCUGa  cc   cg guucuu  uga   cca  ucu  a
  |||||||||||| ||||||||||  ||   || ||||||  |||   |||  |||   
  UACUUUGACGGU GUACUAGacu  gg   gc caagag  acu   ggu  aga  g
uU            -          --  -ca  -      gu   uuc   ug   aa 

>zma-MIR169l (-44.40)   [zma-miR169l:2-22] [zma-miR169l*:69-88]

--     C                   uuccu    uu  ca   caa 
  gUAGC AGGGAUGAUUUGCCUGugg     gucg  gc  ugc   u
  ||||| |||||||||||||||||||     ||||  ||  |||    
  CAUCG UCCCUACUAAACGGgcauc     uagc  ug  aug   g
gC     -                   -----    -u  uc   ucc 

>zma-MIR169m (-57.90)   [zma-miR169m:2-22] [zma-miR169m*:81-100]

--              CU    U   -     u    ug        a    g 
  uUAGCCAAGAAUGG  UGCC Auc uccau auuu  uucaucgc ggaa c
  ||||||||||||||  |||| ||| ||||| ||||  |||||||| ||||  
  AAUCGGUUCUUACC  ACGG uag aggug uaaa  agguagug ccuu c
uG              -U    -   u     -    gu        -    c 

>zma-MIR169n (-53.20)   [zma-miR169n:2-22] [zma-miR169n*:84-103]

--           U        U   -     --u  uug uu    - ug  ag 
  uUAGCCAAGAA GGCUUGCC Auc uccac   gu   g  cguc u  gg  a
  ||||||||||| |||||||| ||| |||||   ||   |  |||| |  ||  c
  AAUCGGUUCUU CCGGACGG uag aggug   ca   u  guag a  cc  c
cG           -        -   u     ugu  -ug gg    u gu  ca 

>zma-MIR169o (-63.21)   [zma-miR169o:2-22] [zma-miR169o*:117-136]

--------------------gUAGCCAAGAAUGACUUGCCU  g      -------   - g   -    uu     c g  g 
                                         Au cacgcc       cuc u uug gcag  ccguc g ca c
                                         || ||||||       ||| | ||| ||||  ||||| | ||  
                                         ua gugcgg       gag g aac cguu  ggcag c gu c
acCGAUCGGUUCUUCUGGACGGcuacgucgguguaacguag  g      cguuuuu   u g   a    --     - g  a 

>zma-MIR169p (-41.80)   [zma-miR169p:2-22] [zma-miR169p*:44-64]

--      AA               auua  u 
  gUAGCC  GGAUGACUUGCCGGc    ua u
  ||||||  |||||||||||||||    || u
  CAUCGG  UCUACUGAACGGccg    gu c
cG      GG               cccg  u 

>zma-MIR169q (-54.50)   [zma-miR169q:2-22] [zma-miR169q*:87-105]

--       A   U        U   -     u    g      -  ucuu    g 
  uUAGCCA GAA GGCUUGCC Auc uccau auuu guccau cu    ggga a
  ||||||| ||| |||||||| ||| ||||| |||| |||||| ||    ||||  
  AAUCGGU CUU CCGGACGG ugg aggug uaag uaggug gg    cccu c
uG       -   -        -   u     -    g      u  uacu    c 

>zma-MIR169r (-57.50)   [zma-miR169r:2-22] [zma-miR169r*:105-125]

-- C         UG          uauuuu a    -     u  cag   ag  --ua g   u 
  g AGCCAAGGA  ACUUGCCGGg      g gcau gcaug ua   ggg  ca    u caa c
  | |||||||||  ||||||||||      | |||| ||||| ||   |||  ||    | ||| u
  C UCGGUUCCU  UGAACGGccu      c cgug cgugc au   ccc  gu    a guu g
uA A         GU          -ucugu -    g     c  --a   ga  uuua g   u 

>zma-MIR171l (-49.20)   [zma-miR171l*:2-22] [zma-miR171l:57-77]

--           C          ag         a     
  gUAUUGGCGUG CUCAAUCCGA  gcguggcug cugg 
  ||||||||||| ||||||||||  ||||||||| ||| c
  UAUAACUGCGC GAGUUAGGuu  uguaccgac ggcg 
uC           C          cu         -     

>zma-MIR171m (-49.00)   [zma-miR171m*:2-22] [zma-miR171m:61-81]

--           C          ag         aua au 
  gUAUUGGCGCG CUCAAUCCGA  gcguggcug   g  u
  ||||||||||| ||||||||||  |||||||||   |  g
  UAUAACUGCGC GAGUUAGGuu  uguaccgac   c  g
uC           C          cu         -gg gc 

>zma-MIR171n (-36.50)   [zma-miR171n*:2-22] [zma-miR171n:57-77]

--         A         C      a         a 
  aUAUUGGUG GGUUCAAUC GAuguu gguuuuaca a
  ||||||||| ||||||||| |||||| ||||||||| a
  UAUAACCGC CCGAGUUAG cuauga cuaaaaugu g
uC         G         U      -         c 

>zma-MIR390a (-93.30)   [zma-miR390a:2-22] [zma-miR390a*:160-180]

-- A         G         Cua   aaacac     u        -   --gc        --a     --        ga      u   g 
  g AGCUCAGGA GGAUAGCGC   gga      auaga cggagccg gcc    gaggagaa   gaaag  agccaaga  uaugug gau a
  | ||||||||| |||||||||   |||      ||||| |||||||| |||    ||||||||   |||||  ||||||||  |||||| ||| a
  C UCGAGUCCU UCUAUCGCg   ucu      uaucu gucuuggu cgg    cuccucuu   uuuuc  ucgguucu  guacau cua u
cA C         A         aag   ---aac     -        g   aggu        gug     ga        ag      -   a 

>zma-MIR393b (-53.50)   [zma-miR393b:2-23] [zma-miR393b*:86-107]

--g                         auuccuuccauuuuuucaugcauggc 
   UCCAAAGGGAUCGCAUUGAUCCauc                          u
   |||||||||||||||||||||||||                           
   AGGUUUUCCUAGCGUAACUAgguag                          g
cGG                         cuguucaggaacgucugcugcuucug 

>zma-MIR393c (-40.10)   [zma-miR393c:2-23] [zma-miR393c*:75-96]

--c           C        CUaac    ---cga   ac  -  -  g 
   UCCAAAGGGAU GCAUUGAU     cugc      ucg  gc cg ac u
   ||||||||||| ||||||||     ||||      |||  || || ||  
   AGGUUUCCCUA CGUGACUG     gacg      agc  cg gc ug a
uUA           A        -acua    aacagg   -c  u  a  c 

>zma-MIR395d (-28.00)   [zma-miR395d*:2-23] [zma-miR395d:45-65]

--      AUG               -  a  gu 
  aGUUCU   CAAGCACUUCACGAg gc uu  u
  ||||||   ||||||||||||||| || ||   
  UCAAGG   GUUUGUGAAGUGuuu cg ga  u
uC      -GG               u  a  ac 

>zma-MIR395e (-38.86)   [zma-miR395e*:2-23] [zma-miR395e:63-83]

--        U              gag     -au  aauaac 
  aGUUCCCU CAAGCACUUCACAU   gcacc   uc      a
  |||||||| ||||||||||||||   |||||   ||      c
  UCAAGGGG GUUUGUGAAGUGua   cgugg   ag      a
uC        -              ---     auu  aacuuu 

>zma-MIR395f (-26.20)   [zma-miR395f*:2-23] [zma-miR395f:49-69]

--    A  UA       G  U    accu      a 
  aGUU CC  CAAGCAC UC CGAu    uggcuu a
  |||| ||  ||||||| || ||||    |||||| u
  UCAA GG  GUUUGUG AG Guug    accgga a
uC    -  GG       A  U    ----      a 

>zma-MIR395g (-28.00)   [zma-miR395g*:2-23] [zma-miR395g:45-65]

--      AUG               -  a  gu 
  aGUUCU   CAAGCACUUCACGAg gc uu  u
  ||||||   ||||||||||||||| || ||   
  UCAAGG   GUUUGUGAAGUGuuu cg ga  u
uC      -GG               u  a  ac 

>zma-MIR395h (-38.79)   [zma-miR395h*:2-23] [zma-miR395h:64-84]

--        U              gag     -au  aaauaac 
  aGUUCCCU CAAGCACUUCACAU   gcacc   uc       a
  |||||||| ||||||||||||||   |||||   ||        
  UCAAGGGG GUUUGUGAAGUGua   cgugg   ag       c
uC        -              ---     auu  aacuuua 

>zma-MIR395i (-39.60)   [zma-miR395i*:2-23] [zma-miR395i:49-69]

--        A               accu      a 
  aGUUCCCU CAAGCACUUCACGAu    uggcuu a
  |||||||| |||||||||||||||    |||||| u
  UCAAGGGG GUUUGUGAAGUGuug    accgga a
uC        -               ----      a 

>zma-MIR395j (-38.79)   [zma-miR395j*:2-23] [zma-miR395j:64-84]

--        U              gag     -au  aaauaac 
  aGUUCCCU CAAGCACUUCACAU   gcacc   uc       a
  |||||||| ||||||||||||||   |||||   ||        
  UCAAGGGG GUUUGUGAAGUGua   cgugg   ag       c
uC        -              ---     auu  aacuuua 

>zma-MIR395k (-34.74)   [zma-miR395k*:2-23] [zma-miR395k:63-83]

--        U             ----------Ug    a    gu 
  aGUUUCCU CAAGCACUUCACA            gagc uucu  c
  |||||||| |||||||||||||            |||| ||||  u
  UCAAAGGA GUUUGUGAAGUGu            uucg aaga  u
uC        -             uacguuauuuaa    a    ga 

>zma-MIR395l (-36.80)   [zma-miR395l*:2-23] [zma-miR395l:60-80]

--       U             C    aggccaugcacaa 
  aGUUCCU CCAAACACUUCAC Agcu             g
  ||||||| ||||||||||||| ||||              
  UCAAGGA GGUUUGUGAAGUG ucgg             a
uC       -             a    auuacacccaagu 

>zma-MIR395m (-41.90)   [zma-miR395m*:2-23] [zma-miR395m:61-81]

--        U                a cu     uu    g 
  aGUUCCUU CAAACACUUCACAUgg g  ucuca  ggug a
  |||||||| |||||||||||||||| |  |||||  ||||  
  UCAAGGAG GUUUGUGAAGUGugcc c  agagu  uuau u
uC        -                - --     uc    a 

>zma-MIR395n (-33.70)   [zma-miR395n*:2-23] [zma-miR395n:45-65]

--        A               -    cgu 
  aGUUCUCU CAAGCACUUCACGAg gcuu   a
  |||||||| ||||||||||||||| ||||    
  UCAAGGGG GUUUGUGAAGUGuuu cgag   c
uC        -               u    agu 

>zma-MIR395o (-98.30)   [zma-miR395o*:2-23] [zma-miR395o:205-225]

-----aGUUCUCUUCAAGCACUUCACGAggcaucacacuga   c   ug           -               u     aucauuugcauuugcuugauguuagucaugca 
                                         gag uuu  ugaaguguuug ggggaacucuuggug cacaa                                c
                                         ||| |||  ||||||||||| ||||||||||||||| |||||                                 
                                         uuc aga  acuucacgaac ucccuugaggaucau guguu                                c
uCUCAAGUGGGUUUGUGAAGUGuuaccgggaaauaauucag   c   gu           a               u     uugcaacgguacaggaaauagaguauagugua 

>zma-MIR395p (-38.80)   [zma-miR395p*:2-23] [zma-miR395p:68-88]

--        U              gag    -cau  --     ac 
  aGUUCCCU CAAGCACUUCACAU   gcac    uc  aaaug  a
  |||||||| ||||||||||||||   ||||    ||  |||||  a
  UCAAGGGG GUUUGUGAAGUGua   ugug    ag  uuuac  c
uC        -              --a    uauu  aa     cu 

>zma-MIR396e (-46.30)   [zma-miR396e:2-22] [zma-miR396e*:145-165]

--       A          A       uucuucucucucuuagaagggccguauagcuucuuugaaccucucucucucucuc 
  uUUCCAC GCUUUCUUGA CUUcuuc                                                       u
  ||||||| |||||||||| |||||||                                                        
  AAGGGUG CGAAAGAACU Gaagaag                                                       c
aG       C          G       ccucuagucucucgcucuccgucucuuacuucuuucacaagcacaugugaaaacu 

>zma-MIR396f (-46.20)   [zma-miR396f:2-22] [zma-miR396f*:96-116]

--                  A    u     uucuucucucuuggaacggcagcuuuc 
  uUUCCACAGCUUUCUUGA CUUc ucuuc                           u
  |||||||||||||||||| |||| |||||                           u
  AAGGGUGUCGAAAGAACU Gaag agaag                           c
aG                  G    c     ccucuacucucucucucucugucuaag 

>zma-MIR396g (-49.50)   [zma-miR396g:2-22] [zma-miR396g*:93-113]

--uUC          A         cc  u   u   uuggaucaauugaaacucga 
     CCACAGCUUU UUGAACUGc  uc ugc ugc                    u
     |||||||||| |||||||||  || ||| |||                    c
     GGUGUCGAAA AACUUGacg  ag acg acg                    a
uAGAA          G         -u  u   u   ucguccgacacgacaccugg 

>zma-MIR396h (-56.54)   [zma-miR396h:2-22]

-------------------------uUC          A           gcaccugcugaugcggguggagg 
                            CCACAGCUUU UUGAACUGcau                       a
                            |||||||||| |||||||||||                       g
                            ggugucgaaa aacuugacgua                       u
cauuagucuaccggaagaaacacuagaa          g           gagagucuccucgccgucgaagu 

>zma-MIR397a (-43.44)   [zma-miR397a:2-22] [zma-miR397a*:122-143]

-  CAU       -    UUG     g ggagcauguacgucuucccgggcuucacuuucagcuugaacgu 
 gU   UGAGCGC AGCG   AUGau c                                           g
 ||   ||||||| ||||   ||||| |                                           u
 CA   ACUCGCG UUGC   Uacua g                                           c
U  AUU       A    CGA     a aaauaugauugaguauagguaugaauacuauacguacgugcgu 

>zma-MIR397b (-50.50)   [zma-miR397b:2-22] [zma-miR397b*:63-83]

--aUC      C         A      a     cgu   ucc 
     AUUGAG GCAGCGUUG UGagcc gccgc   gcc   c
     |||||| ||||||||| |||||| |||||   |||   c
     UAACUC CGUCGCGAC acucgg cggcg   cgg   u
cGCAU      A         C      -     --u   cug 

>zma-MIR398a (-70.20)   [zma-miR398a*:2-22] [zma-miR398a:119-139]

------------gGGGGCGAACUGAGAACACAUGagaaua ug       auugcuc  cu  -    ac      u c 
                                        a  agaugag       gc  cg cggu  gguucg g u
                                        |  |||||||       ||  || ||||  |||||| |  
                                        u  ucuacuu       cg  gc gcca  ccaggu c g
cGCCCCCGCUGGACUCUUGUGUacgucguaauaauacgca gu       -----gc  cu  u    --      c g 

>zma-MIR398b (-61.80)   [zma-miR398b*:2-22] [zma-miR398b:87-107]

--       GA             ggaaugaga        u   u  g   u  u   c 
  gGGGGCG  CUGGGAACACAUG         ugagauca ugc cg ucg gc ggc u
  |||||||  |||||||||||||         |||||||| ||| || ||| || |||  
  CCCCCGC  GACUCUUGUGUac         guucuagu gcg gc ggc ug ccg g
gG       UG             ---------        u   c  -   -  -   g 

>zma-MIR399g (-38.00)   [zma-miR399g*:2-22] [zma-miR399g:47-67]

--a      CC    G        ----ugcg   g 
   GGGCAA  CCCC UUGGCAGG        acg c
   ||||||  |||| ||||||||        |||  
   CCCGUU  GGGG AACCGUcc        ugc g
cGG      UA    A        caucccca   a 

>zma-MIR399h (-41.00)   [zma-miR399h*:2-22] [zma-miR399h:73-93]

--  U           C     -C   ccaa     -a -ca   u   c 
  aG GCAGUUCUCCU UGGCA  Gaa    ggcug  g   gcu gcc c
  || ||||||||||| |||||  |||    |||||  |   ||| |||  
  UC CGUUAAGAGGA ACCGU  cuu    ccggc  c   cga cgg a
cG  C           A     uc   ---c     ag acc   u   u 

>zma-MIR399i (-45.00)   [zma-miR399i*:2-22] [zma-miR399i:70-90]

--  U           C      Gag    cgacu    -   ac   c 
  aG GCGGCUCUCCU UGGCAU   ggcg     gaga ggc  gaa a
  || ||||||||||| ||||||   ||||     |||| |||  |||  
  UC CGUUGAGAGGA ACCGUa   ccgu     cucu ccg  cuu g
cG  C           A      --a    ----c    u   gu   u 

>zma-MIR399j (-93.80)   [zma-miR399j*:1-21] [zma-miR399j:154-174]

---A            C       - ag       gucaucgucgccaucgacgacgguugcuuggcucugcuaugcuguguucguuc 
    GGCAGCUCUCCU UGGCAGG c  gcgcgcg                                                     g
    |||||||||||| ||||||| |  |||||||                                                     u
    CCGUUGAGAGGA ACCGUcc g  ugcgcgc                                                     c
cGUC            A       u ca       acguacgugcguacaaugugacguuacguacgugccgaucgaucgugugguac 

>zma-MIR408b (-62.00)   [zma-miR408b*:3-23] [zma-miR408b:125-145]

--ga      C       A   U   u       cau    agaauuccaaauuugauuucuguuugcucgcuc 
    CAGGGA GAGGCAG GCA GGg agggggc   caac                                 a
    |||||| ||||||| ||| ||| |||||||   ||||                                 c
    GUCCCU CUCCGUC CGU ccc ucccucg   guug                                 a
cuCG      U       A   C   -       -uu    cggacucacacaaacaccacucagggagguaaa 

>zma-MIR482 (-38.00)   [zma-miR482*:3-21] [zma-miR482:101-120]

--        - UG      CCUU  --au   --u   accgccggaggagcgcucgccuucu 
  agUGGGAG A  AAGGAG    gc    cga   guc                         u
  |||||||| |  ||||||    ||    |||   |||                         c
  UUACCCUC U  UUCCUU    cg    gcu   cag                         g
uu        C UG      --CU  cucc   ccc   gcucccgccgauaacgccgccacgc 

>zma-MIR528a (-60.94)   [zma-miR528a:2-22] [zma-miR528a*:103-123]

-            U   G     g  cac   c    uguggcuggaagaagcagccggggcc 
 gUGGAAGGGGCA GCA AGGAG ag   gag gagg                          u
 |||||||||||| ||| ||||| ||   ||| ||||                           
 UACCUUCUCCGU CGU UCCuc uc   cuc cucc                          g
U            C   G     -  ---   a    ucucgaacgcuccccauauaucgugu 

>zma-MIR528b (-47.00)   [zma-miR528b:2-22] [zma-miR528b*:58-78]

-            U   G     cacg       u  g 
 gUGGAAGGGGCA GCA AGGAG    aacgagg gu g
 |||||||||||| ||| |||||    ||||||| || u
 UACCUUCUCCGU CGU UCCuc    uugcucc cg u
U            C   G     ucga       c  g 

>zma-MIR529 (-50.50)   [zma-miR529:2-22] [zma-miR529*:105-125]

--            A          -   gc   guac     -----   a  uc      cucu 
  gAGAAGAGAGAG GUACAGCCUu guu  cau    acacu     cag ua  aacagu    u
  |||||||||||| |||||||||| |||  |||    |||||     ||| ||  ||||||    a
  UUCUUCUCUCUC CAUGUCGgaa uag  gug    uguga     guc au  uugucg    u
uC            C          g   ua   -acc     uuauu   c  ca      uuua 

>zma-MIR827 (-61.20)   [zma-miR827*:3-23] [zma-miR827:101-121]

-gu                           gcuucgaucgauggauuggugcaugcaugg 
   UUUGUUGGUGGUCAUUUAACCaugcau                              a
   |||||||||||||||||||||||||||                              u
   AAACGACUACCAGUAGAUUgguacgug                              u
uAC                           acuacgcgguguacguagugugauacguua 

>zma-MIR1432 (-56.30)   [zma-miR1432:2-22] [zma-miR1432*:68-89]

-   -    A           G  gc         -----    c a 
 gCU CAGG GAGAUGACACC AC  cagacggac     cggu c u
 ||| |||| ||||||||||| ||  |||||||||     |||| |  
 CGA GUCC CUCUACUGUGG ug  gucugccug     gccg g c
A   A    G           G  aa         ucugu    c c 

>zma-MIR390b (-106.00)   [zma-miR390b:2-22] [zma-miR390b*:171-191]

-- A         G         Cua   ------a    c c      u      ac  a  -   --a       u a                       
  g AGCUCAGGA GGAUAGCGC   gga       auca a auagau ggagcc  ga ga gga   gggagaa g gagagagagagacagagcagcu 
  | ||||||||| |||||||||   |||       |||| | |||||| ||||||  || || |||   ||||||| | ||||||||||||||||||||| a
  C UCGAGUCCU UCUAUCGCg   ccu       uagu u uaucug ucuugg  cu cu ccu   uucucuu c cucucucucucugucucgucgu 
cA C         A         aag   agcuaag    a a      -      aa  -  a   agg       u a                       

>osa-MIR2906a (-102.51)   [osa-miR2906a:175-195]

   g     cu    ug       cauagau   cc      --   aaguugcguaguugggccggcggggcuugagcgaaagcucuggccucacguuucccuagag 
gcu cgggc  gggu  gcagugc       ggc  gcccgu  ucc                                                             u
||| |||||  ||||  |||||||       |||  ||||||  |||                                                             g
ugg guucg  cccG  CGUCACG       CCG  CGGGCA  agg                                                             g
   -     --    GU       -------   -C      Au   aagguggcaaccuucgccugucauaagcgacgagacacuucggucggagugcguuacggac 

>osa-MIR2906b (-30.70)   [osa-miR2906b:52-72]

   u    uca   a  a   aauacu     -----      a 
ggc gguu   cag gc gcg      gcccg     cuucca c
||| ||||   ||| || |||      |||||     ||||||  
ucg ccGG   GUC CG CGC      CGGGC     gaaggu g
   c    -UC   A  C   ------     AAuag      g 

>osa-MIR2907a (-26.70)   [osa-miR2907a:36-57]

    a     cucucc    --a      ca  a 
gagc gcucu      gccc   cuuggc  cc c
|||| |||||      ||||   ||||||  ||  
uucg cggGG      CGGG   GAGCCG  GG g
    a     ---CUC    AGC      AC  c 

>osa-MIR2907b (-32.30)   [osa-miR2907b:36-57]

    accuc    ucc    --       ca  a 
gagc     uccc   gccc  gcucggc  cc c
||||     ||||   ||||  |||||||  ||  
cucg     ggGG   CGGG  CGAGCCG  GG g
    ---ac    CUC    AG       AC  u 

>osa-MIR2907c (-55.20)   [osa-miR2907c:5-26]

      CAGCC   C -A             aagccgcgggagagc 
gcgcGG     GAG G  GGGCCUCGGggcg               c
||||||     ||| |  |||||||||||||                
cgcgcc     cuc c  cccggagccccgu               c
      -----   c cc             acugcagugggggag 

>osa-MIR2907d (-30.20)   [osa-miR2907d:37-58]

   gc     uaucucca   a   --   c   a 
gag  acccc        ccc cgc  ggc gcc c
|||  |||||        ||| |||  ||| |||  
cuc  uggGG        GGG GCG  CCG CGG a
   aa     ----CUCC   A   AG   A   u 

>sbi-MIR162 (-51.70)   [sbi-miR162:107-127]

--  gc    u            uc     u  c    ---  u   ccagaa    ug    uuc 
  gg  gcag gguuuaucgauc  uuccu gc uugu   gc agu      guag  gugg   a
  ||  |||| ||||||||||||  ||||| || ||||   || |||      ||||  ||||   a
  CC  CGUC CCAAAUAGCUag  aaggg cg aaca   cg uca      cguc  uauu   g
GA  UA    U            cu     -  c    aaa  u   --auaa    gu    ugc 

>sbi-MIR169o (-65.30)   [sbi-miR169o:2-22]

a     AA              ---u    a  u  ga         -    c 
 UAGCC  GGAUGAUUUGCCUG    agca cc cu  gugcuccug cugc a
 |||||  ||||||||||||||    |||| || ||  ||||||||| ||||  
 aucgg  ucuacuaaacgggc    ucgu gg ga  cgcgaggac gacg u
g     -g              cucu    g  u  ac         u    g 

>sbi-MIR169p (-55.40)   [sbi-miR169p:2-22]

--       A   U    U   U   -     u    g        -      cc 
  uUAGCCA GAA GGCU GCC Auc uccau auuu guucauca gaggga  u
  ||||||| ||| |||| ||| ||| ||||| |||| |||||||| ||||||  c
  aaucggu cuu ccga cgg uag aggug uaaa uagguagu cucccu  u
ug       -   c    -   -   u     -    g        a      ag 

>sbi-MIR169q (-50.20)   [sbi-miR169q:2-22]

--              CU    U   -     u    ug     --    g agg 
  uUAGCCAAGAAUGG  UGCC Auc uccau auuu  uucau  cgau c   c
  ||||||||||||||  |||| ||| ||||| ||||  |||||  |||| |    
  aaucgguucuuacc  acgg uag aggug uaaa  aggua  gcua g   c
ug              -u    -   u     -    gu     cu    g gau 

>sbi-MIR172f (-59.80)   [sbi-miR172f:98-118]

--                  a   -      aacaccguugggugggugcaguuaccca 
  gcggcaucaucaggauuc cac cgggua                            u
  |||||||||||||||||| ||| ||||||                            g
  CGUCGUAGUAGUCCUAAG gug guucgu                            c
CA                  A   c      ugucuaucucggucuggacguauauaca 

>sbi-MIR398 (-58.40)   [sbi-miR398:88-108]

--       ga             g a ug  -    g  ---auu    --    g 
  gggggcg  cugggaacacaug g a  ag agau ag      gcuc  gguc u
  |||||||  ||||||||||||| | |  || |||| ||      ||||  |||| g
  CCCCCGC  GACUCUUGUGUac u u  uc ucua uu      cggg  ccgg c
cG       UG             g a gu  g    g  gaugcu    uc    u 

>sbi-MIR399k (-30.60)   [sbi-miR399k:42-62]

--a      cc    a        -  c acc 
   gggcaa  cucc uuggcagg ug g   u
   ||||||  |||| |||||||| || |    
   CCCGUU  GGGG AACCGUcc au c   a
cGG      UA    A        c  c cac 

>sbi-MIR528 (-49.90)   [sbi-miR528:1-21]

--           U   G     ---  -      -----     u 
  UGGAAGGGGCA GCA AGGAG   ca cgaggc     uuggc g
  ||||||||||| ||| |||||   || ||||||     ||||| g
  accuucuccgu cgu uccuc   gu gcuccg     agccg a
uu           c   g     ucg  c      caucc     a 

>rlcv-mir-rL1-14-2 (-49.60)   [rlcv-miR-rL1-14-5p:20-42] [rlcv-miR-rL1-14-3p:58-78]

caccu   -    gg        GA          C  UU    u  uu 
     gcc cucc  cugggUCG  CGGUCUGGUG GC  GAUg gu  u
     ||| ||||  ||||||||  |||||||||| ||  |||| ||  u
     cgg gagg  gacuCAGC  GUCGGACUAC CG  CUac ca  a
guucc   u    -a        AA          A  --    -  ug 

>rlcv-mir-rL1-17 (-38.90)   [rlcv-miR-rL1-17:58-79]

   g  -    g    c       c  c  g    ug acuug   u 
cau cc cgug uguu ugaugga ag gg gaag  c     ugc u
||| || |||| |||| ||||||| || || ||||  |     |||  
gua gg gcac auAA ACUACCU UC CC CUUC  g     aug a
   -  a    a    U       C  -  G    GU -gcua   u 

>rlcv-mir-rL1-18 (-39.40)   [rlcv-miR-rL1-18:53-74]

        g   u       u     c   guau      au 
aggugugg guu agaugau ggggg ggc    cuuuug  u
|||||||| ||| ||||||| ||||| |||    ||||||   
uuuacacc caG UCUACUA CCCUC CCG    gaaaau  u
        a   U       C     C   -AUU      gg 

>rlcv-mir-rL1-19 (-40.40)   [rlcv-miR-rL1-19:14-35]

     u      uUA       C U     U    - c    uu 
ucagg guggaa   UAGAUAG G GGGUG GUGA c uugu  g
||||| ||||||   ||||||| | ||||| |||| | ||||  u
agucc caccuu   gucuguc c cccac cacu g aaca  u
     u      -uc       - -     -    a a    ca 

>rlcv-mir-rL1-20 (-40.70)   [rlcv-miR-rL1-20-5p:23-44] [rlcv-miR-rL1-20-3p:61-82]

  a  g      uu      -  UA     U   GU         ca    g 
gc uu accuug  gguuac cu  AAGGG AGU  GGUUCACAG  guuu u
|| || ||||||  |||||| ||  ||||| |||  |||||||||  |||| g
cg ag ugggac  ccaaug GA  UUCCC UCA  CUAGGUGUc  caaa a
  -  g      --      U  --     U   AU         --    a 

>rlcv-mir-rL1-21 (-48.70)   [rlcv-miR-rL1-21:54-75]

    ------        c    uu               g    --   a 
ggcu      gagcugug aguu  gauuguggggggagg cucu  cuu u
||||      |||||||| ||||  ||||||||||||||| ||||  |||  
ccga      cucgacac uuAA  UUAACACUCUUCUCC GAga  gga c
    agaccu        u    UC               G    uc   u 

>rlcv-mir-rL1-22 (-42.90)   [rlcv-miR-rL1-22:60-81]

au   u  cu     u    u         -            uu   u 
  agu au  aggcu gaua ucguggggg gaaacgguggau  ugg g
  ||| ||  ||||| |||| ||||||||| ||||||||||||  ||| u
  ucg ua  uuugg uuaU AGCACCCCU CUUUGCCACUua  auu a
uc   u  ac     c    U         A            uu   g 

>rlcv-mir-rL1-23 (-42.30)   [rlcv-miR-rL1-23-5p:21-42] [rlcv-miR-rL1-23-3p:55-76]

u    gug gg           A       U    C    G uaac 
 ggcu   g  gcuggguauUC CUAGUGC GGCA CUAA A    u
 ||||   |  ||||||||||| ||||||| |||| |||| |     
 cuga   c  uggcuuaUGAG GGUCACG CUGU GAUU u    a
a    aga uu           A       U    U    g uaag 

>rlcv-mir-rL1-24 (-37.30)   [rlcv-miR-rL1-24-5p:17-38] [rlcv-miR-rL1-24-3p:54-75]

   g      cc    -C         C      A     --   u 
cgu cgggug  cugg  UCAAGUUCU AUUUCC AUACa  guu g
||| ||||||  ||||  ||||||||| |||||| |||||  |||  
gua gcccgu  gacC  AGUUCAGGA UAGAGG UAUgu  caa a
   -      uu    AU         -      C     uc   g 

>rlcv-mir-rL1-25 (-38.90)   [rlcv-miR-rL1-25:62-83]

    augaugu      u   ggu         uaaauuggaaacaauaaua 
gggg       ggcugc gcu   gcuagaccc                   g
||||       |||||| |||   |||||||||                    
cccc       cugacg ugA   UGAUCUGGG                   u
    ----ggu      u   ---         UAAUUUAACAGUgucuuag 

>rlcv-mir-rL1-26 (-33.60)   [rlcv-miR-rL1-26:46-67]

   u   -    c      -  u   a     ucau 
cgc ggc gcua acccgg ga ucg agcag    u
||| ||| |||| |||||| || ||| |||||    g
gcg uuG CGAU UGGGCC CU AGC Ucguc    g
   -   A    U      U  U   A     uccg 

>rlcv-mir-rL1-27 (-39.20)   [rlcv-miR-rL1-27:49-70]

  ag  ac   g          u     c   c  -  uu 
gg  ug  ccg agccgccucc ugguu ugu ca ca  u
||  ||  ||| |||||||||| ||||| ||| || ||   
cc  ac  ggc UUGGUGGAGG ACCAA ACA gu gu  u
  -g  gu   G          U     U   C  c  ug 

>rlcv-mir-rL1-28 (-37.30)   [rlcv-miR-rL1-28:56-77]

      ccgga     -ug   u        u    ----         u 
guggac     gaguc   ucu ggaaggcg ugcu    uucagcugu u
||||||     |||||   ||| |||||||| ||||    |||||||||  
uaccug     uucgg   AGA UCUUCCGC AUGA    AGguuggua a
      -----     uua   -        U    AAGG         u 

>rlcv-mir-rL1-29 (-51.50)   [rlcv-miR-rL1-29:57-78]

gcu    --c          aac        -             -a ua 
   gagu   cguguccuaa   caguccca gcagacaaaacau  g  u
   ||||   ||||||||||   |||||||| |||||||||||||  |   
   cuca   gcgcgggauu   GUCAGGGU CGUUUGUUUUgug  c  g
-ug    aau          GAC        U             ag ug 

>rlcv-mir-rL1-30 (-44.70)   [rlcv-miR-rL1-30:56-77]

ca    ---g  -    uc      -    u         u        uug 
  ggaa    cc cgug  cuggca ccgg ccuuugagg acgaaaca   u
  ||||    || ||||  |||||| |||| ||||||||| ||||||||   g
  cuuu    gg guac  gacuGU GGCU GGAAGCUUU UGCUUUgu   a
-g    uaga  u    gu      C    -         -        uug 

>rlcv-mir-rL1-31 (-59.30)   [rlcv-miR-rL1-31-5p:18-39] [rlcv-miR-rL1-31-3p:54-75]

u       aau       C       C    -   G    uugug 
 gccgggu   gcccggU GCUUACG CGAC CGC UAAC     g
 |||||||   ||||||| ||||||| |||| ||| ||||      
 cggccca   cgggcCG CGAAUGC GCUG GCG AUug     u
g       --g       A       U    U   G    uuaua 

>rlcv-mir-rL1-32 (-37.70)   [rlcv-miR-rL1-32-5p:11-32] [rlcv-miR-rL1-32-3p:46-67]

        u UAA           -   -      uaac 
uggugucc g   CUUACUACUGC CGC UUUACa    g
|||||||| |   ||||||||||| ||| ||||||     
aucgcagg c   GGAUGAUGACG GCG AAAUgu    u
        u uGC           A   U      ucga 

>rlcv-mir-rL1-33 (-33.90)   [rlcv-miR-rL1-33:15-36]

     -  uc   a C   G           - C     u  a 
gugga cu  cag c AUU UCUUCAUUUGC C UUGCg gu c
||||| ||  ||| | ||| ||||||||||| | ||||| || a
cgccu ga  guc g uaa ggggguaaacg g aacgu ca u
     u  gu   c a   g           a a     -  g 

>ctr-MIR156 (-76.73)   [ctr-miR156:35-54]

-------------------------------------------ugaagaggaagaggaaacauaacgagagagcua            -         a   ag    uu     a 
                                                                            cUGACAGAAGAG AGUGAGCAC cgc  guaa  guauu g
                                                                            |||||||||||| ||||||||| |||  ||||  |||||  
                                                                            gacugucuucuc ucgcucgug gug  cguu  uauaa a
acuaucuuccuucucguuuucucccgacccccaaugcugcacgaccccaacacuccuucgugaacguuuuuacugc            c         c   ga    uc     a 

>csi-MIR160 (-63.20)   [csi-miR160:33-53]

auuauac     uc        -    -auu      C       CU          ug a   -   a    a 
       cuaug  uauauauu uaua    augUGC UGGCUCC  GUAUGCCAuu  c gag uca ucga a
       |||||  |||||||| ||||    |||||| |||||||  ||||||||||  | ||| ||| ||||  
       gauac  auauauaa augu    uauacg accgagg  uaugcgguag  g cuc ggu agcu c
---uaua     cc        u    accu      u       ag          gu c   c   -    a 

>csi-MIR164 (-71.15)   [csi-miR164:14-34]

------------------------------------------------------------------------------------gugua ag  a     A    C          CAuuac         cgcacauacau   c      aaauuaauuaauccacacauuuugaaga 
                                                                                         g  ca gaUGG GAAG AGGGCACGUG      uaacucaac           cua uaacaa                            a
                                                                                         |  || ||||| |||| ||||||||||      |||||||||           ||| ||||||                            a
                                                                                         c  gu cuacc cuuc ucccguguac      auugaguug           gau auuguu                            c
accguguacuuaaaacgauucuucuuuaagucuagaacucgacuagggacuacuaugugucuguguguguguguguguguuccacggcg ca  a     c    u          uucuuu         aguacugacuc   -      gucuuucucgaacgacgaagaacuaaac 

>csi-MIR166 (-63.60)   [csi-miR166:139-159]

-g      uuuu   u   a        uu      cu   g   a   --cuu     -   auuaauuuuacguauucucucauagau 
  gggagc    ugu uug ggggaaug  gucugg  cga gac cua     guuga ucc                           c
  ||||||    ||| ||| ||||||||  ||||||  ||| ||| |||     ||||| |||                           u
  ucuucg    aua aac CCCCUUAC  CGGACC  GCU cug ggu     cgacu agg                           a
ua      --uu   u   c        UU      AG   g   c   uuauu     u   cauauaacaauaggugguaagucuacg 

>ctr-MIR166 (-95.01)   [ctr-miR166:191-212]

gguuugucugaaggaucuaggguuaauugggaagcuuuuucuuuugaggggaauguugucuggcucgaggccacuaacuagaucuuugauuuaaucucaguugaucauauauuuguuucauuuuucuuccauaaaauuuaauuauauugagauacccaucauugaucuuaagauaauuaaguuagugacgUCGGACCAGGCUUCAUUCCCCCcaauaauugcuucuaucugcuaugauaucaucuucauuucuuggaggugcugugaucaguucucaaacuu    ug -u       ca   -uu  uu        auuuauugaucuuguguuguguauauuugu 
                                                                                                                                                                                                                                                                                          uagu  a  uuuuuca  auu   uc  uuuguuua                              a
                                                                                                                                                                                                                                                                                          ||||  |  |||||||  |||   ||  ||||||||                               
                                                                                                                                                                                                                                                                                          guca  u  agaaagu  uaa   gg  agacgagu                              u
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    gu uu       ag   ugu  uu        accgguuacugguucuagagaggcaacugg 

>ccl-MIR167a (-61.10)   [ccl-miR167a:24-45]

cauau      -    g      u            C        Aa        -  ccu 
     ucgugc acua uaguag UGAAGCUGCCAG AUGAUCUG  cuuuccuu ga   c
     |||||| |||| |||||| |||||||||||| ||||||||  |||||||| ||    
     gguacg uggu guuauc acuuugacgguc uacuagac  gaaaggga cu   c
agacc      a    a      c            -        cg        u  cua 

>ccl-MIR168 (-70.90)   [ccl-miR168:20-40]

gu    gg       ua     C          U     A ug   g  uagu       ug -a   uu  gac    a gu   guguu 
  uacc  cggucuc  auUCG UUGGUGCAGG CGGGA c  auu gc    uuuuuuu  a  auu  uu   agcg g  ggc     g
  ||||  |||||||  ||||| |||||||||| ||||| |  ||| ||    |||||||  |  |||  ||   |||| |  |||      
  gugg  gccagag  uaagu aacuacguuc gcccu g  uaa cg    aaaaaaa  u  uaa  aa   uugc c  cug     u
--    -a       gc     c          c     a gu   g  ---u       gu ag   uu  -au    a ug   guuaa 

>csi-MIR169 (-198.81)   [csi-miR169:94-114]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aucaagugcuaccuuauauacagaauagaaagaauaacaa       --aaauug    -        uuau    ag     a u  a   ucua   C        A       -Ac gc    a 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  agguugg        gucu aggguuuc    auga  ggaua a ag gga    GAG CAAGAAUG CUUGCCG   g  auug c
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  |||||||        |||| ||||||||    ||||  ||||| | || |||    ||| |||||||| |||||||   |  ||||  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  uccaacc        cagg ucucagag    uacu  ucuau u uc ccu    cuc guucuuac ggacggc   c  uaau c
cuauacauguuuuaauaauuuuaaaguacuauuacgucuacuccucuccaaggagugaggaacaguuuuaacuacgugcuaauuaauaaaauuaaacaagcuauuaguucgauagauaaggaagcgagaucaagaacguacuugucuccuagcugcucggacgauaacacacguauuauuuaugucguauuuuagugugagguugguuucuaacacaguagggguuaagauguugacaaacguauuuuccaacauguuuacgguccucuuugcgguuucgagguucuuuuuugaaaauuaauaaagauugaucuaauaacguuuuauauacggugggauuuuauucgaauacuaauucuugucguaacgaauugagacaaccaacauuaucucuaaaacaugacaaguaccuagaccuuuuuaccgaguuccuccucuucagucuuuuuacccccuuuuuauuuuuacacugcgucucgaguaaucuacucguaucauaguaucuaguggacucuuaucuuucuuaguagaccacgacguaacgac       aacaguca    c        --uc    cu     c c  g   -caa   u        c       aua ua    a 

>ccl-MIR171 (-94.00)   [ccl-miR171:122-142]

gauc  uu        --aa        u      ac     ---     gauggauggguacucacgggauauuggugcgguucaauaagaaaacggugcucaauacuuuuugagcuccgcuuuuUGAUUGAGCCGCGCCAAUAUCacgugccacucgcucu 
    uc  ggggguua    augaagau guggug  cauuu   uggag                                                                                                                 c
    ||  ||||||||    |||||||| ||||||  |||||   |||||                                                                                                                 u
    ag  uucccagu    uauuuuug uacuac  guaga   accuc                                                                                                                 a
-uua  cu        auug        u      --     uuu     gguuaacuugucauuuuaaauuugucuucguuauucgaucuuaaaauuaaauuuggggaugaauggacuggaguuguauuaaugcgcgaggggacacgaauuuucuuucguua 

>csi-MIR172 (-63.30)   [csi-miR172:115-134]

gucaccuuaaaac        c       a        c         a   --c   -ucua      aa     c   uuu 
             agucguug ucgcugu gcagcguc ucaagauuc cau   cag     aaggca  agcag aau   u
             |||||||| ||||||| |||||||| ||||||||| |||   |||     ||||||  ||||| |||    
             ucaguaau agcggca CGUCGUAG AGUUCUAAG gug   guu     uuccgu  ucguu uua   c
-aacaaccaucga        u       A        U         A   acu   uuugg      --     u   cuu 

>ctr-MIR319 (-80.71)   [ctr-miR319:157-176]

-uua   --        uu          cu      u   aa            a -  g   ac       uc  aa    uaguaaa    cgaa 
    agc  ugggagcu  cuucggucca  uauggg ggc  uaggauuuaauu g cu cug  ucauuca  ca  uacu       gggu    a
    |||  ||||||||  ||||||||||  |||||| |||  |||||||||||| | || |||  |||||||  ||  ||||       ||||     
    ucg  aCCCUCGA  GAAGUCAGGU  gugucc ucg  auucuaaguuaa c ga ggc  aguaagu  gu  auga       ccca    u
ucgc   uu        GG          Uc      u   -a            a a  g   gu       ga  aa    -------    uagg 

>ccl-MIR396 (-70.30)   [ccl-miR396:143-163]

agagugguccuugaaauagccucuuuguaugggcuuccugcuuaauucuuccucucuaacaucgaguguaaaaugaauggaagaucaucaagccacagauaugagaucugaacauuauuauuauuaaguccuggucaugcuuUUCCACAGCUUUCUUGAACUUccacuguuugcugauuaauac     --     cu    ----a     -  ua  u 
                                                                                                                                                                                        acggc  ucuug  agcu     ggcgc cg  ug a
                                                                                                                                                                                        |||||  |||||  ||||     ||||| ||  ||  
                                                                                                                                                                                        ugucg  agaac  ucga     ccgcg gc  ac g
-----------------------------------------------------------------------------------------------------------------------------------------------------------guuuaggacuuccacacgguacaagaggg     aa     --    gggua     c  -c  a 

>csi-MIR398 (-83.80)   [csi-miR398:132-152]

------------------------------------------------------caacagaug    ac        a    u          g      g        uaaauuugauuugcauugcugcugccugcu 
                                                               ugaa  cccagagg guga ccugagaaca agggug cguuggcu                              c
                                                               ||||  |||||||| |||| |||||||||| |||||| ||||||||                              c
                                                               acuu  ggguUUCC CACU GGACUCUUGU Uuccac gcaaccgg                              u
acuuagucuucgucgcuuacaaucucguuaacucauugaacuacugugcacgacuaacuguua    aa        C    -          G      -        uguauguuagaaaaacuaaauuacauaccg 

>ctr-MIR164 (-81.55)   [ctr-miR164:22-42]

---------------------------------------------------------------------------------------gaagguguguguagag  a     A    C          CAuuac         cgcacauacau   c     aaaauuaauuaauccacacauuuugaaga 
                                                                                                       ca gaUGG GAAG AGGGCACGUG      uaacucaac           cua uaaca                             a
                                                                                                       || ||||| |||| ||||||||||      |||||||||           ||| |||||                             a
                                                                                                       gu cuacc cuuc ucccguguac      auugaguug           gau auugu                             c
aaaccauccgaaaucuaaccguguacuuaaaacgauucuucuuuaagucuagaacucgacuagggacuacuaugugugugugugugcguguuccacggcgcca  a     c    u          uucuuu         aguacugacuc   -     ugucuuucucggaggacgaagaacuaaac 

>ctr-MIR167 (-61.10)   [ctr-miR167:24-45]

cauau      -    g      u            C        Aa        -  ccu 
     ucgugc acua uaguag UGAAGCUGCCAG AUGAUCUG  cuuuccuu ga   c
     |||||| |||| |||||| |||||||||||| ||||||||  |||||||| ||    
     gguacg uggu guuauc acuuugacgguc uacuagac  gaaaggga cu   c
agacc      a    a      c            -        cg        u  cua 

>ctr-MIR171 (-92.10)   [ctr-miR171:104-124]

aucgacgguugaaggggagaguuguaaaaugaaaucaucaagguauuggcgcgccucaauuuaaagacgugguuaaaugggcaugauuagccauguauuuucaUUGAGCCGCGUCAAUAUCUCCuuaauuauuuuguaacucucuccucuauauccucgccuucgguaugcagcugcuccucgauacauaugaggauucagaaacagacaaaggcgguagaaguaaucuucaucaauauuauugaagcaggaaacauaacggcaaguuuuaagaccc        ---c   ug  guc       gau 
                                                                                                                                                                                                                                                                                     guuugggg    aug  gg   ucauuuu   g
                                                                                                                                                                                                                                                                                     ||||||||    |||  ||   |||||||   u
                                                                                                                                                                                                                                                                                     caaacucc    uau  uc   agugaag   u
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------caacaaggacggccggaccucacucacuua        cuuu   gu  aaa       uaa 

>ccl-MIR167b (-71.50)   [ccl-miR167b:21-42]

---------------------------------------------------------------------------------------auu     -    g      u            C        Aa        -  ccu 
                                                                                          cgugc acua uaguag UGAAGCUGCCAG AUGAUCUG  cuuuccuu ga   c
                                                                                          ||||| |||| |||||| |||||||||||| ||||||||  |||||||| ||    
                                                                                          guacg uggu guuauc acuuugacgguc uacuagac  gaaaggga cu   c
cuauggacaaagaucccaaaaaguagacgguuuuggaugacccaaacaacucuugcuagaccaccuccucuucuuuaaucccaaagaccg     a    a      c            -        cg        u  cua 

>crt-MIR166a (-75.25)   [crt-miR166a:161-182]

uucccuucagaaucaaauucauuguuugauuuuuuuu      ---uua               uu      cu     g    c     ---uuu  a       uc   cuuucuuucu 
                                     gagagg      ugguugaugggaaug  guuugg  cgagg ucau uaggu      ca aauuuuc  gga          u
                                     ||||||      |||||||||||||||  ||||||  ||||| |||| |||||      || |||||||  |||           
                                     cucucu      gccaacUGCCCUUAC  CGGACC  GCUcu agug auccg      gu uuaaaag  ccu          g
-----------------------------------uu      uuggca               UU      AG     -    u     uuuauu  a       ga   uuuuauuuuc 

>crt-MIR166b (-70.52)   [crt-miR166b:161-182]

uauauguucucaucuggguuagcuuaggguuuugagagcaggaagccaugaaagucgauggaugggagaaa     --   u           c  uu      cu      -----auua  a            a 
                                                                       aauga  uug uucugagggga ug  gucugg  cgaugc         au auaauuauaauu u
                                                                       |||||  ||| ||||||||||| ||  ||||||  ||||||         || ||||||||||||  
                                                                       uuacu  aac aagacUUCCCU AC  CGGACC  GCUaug         ua uauuaauauuaa a
-------------------------------------------------------------------uuug     ua   u           U  UU      AG      ggaaaaaag  c            u 

>crt-MIR168 (-73.00)   [crt-miR168:21-41]

---------------------ag     gg       ua     C          U     A ug   g  uagu       ug -a   uu  gac    a gu   guguu 
                       uuacc  cggucuc  auUCG UUGGUGCAGG CGGGA c  auu gc    uuuuuuu  a  auu  uu   agcg g  ggc     g
                       |||||  |||||||  ||||| |||||||||| ||||| |  ||| ||    |||||||  |  |||  ||   |||| |  |||      
                       agugg  gccagag  uaagu aacuacguuc gcccu g  uaa cg    aaaaaaa  u  uaa  aa   uugc c  cug     u
uuccauuuauagguagguuagag     -a       gc     c          c     a gu   g  ---u       gu ag   uu  -au    a ug   guuaa 

>crt-MIR171 (-81.80)   [crt-miR171:161-181]

aauaugacaggaauaugcaggaugcuggaaucuuguuuccuaucuuuuggggguuaaaaugaagauuguggugaccauu      ga  ga   guaca   g        ug         a     a   u      ua 
                                                                               uuggag  ug  ugg     acg gauauugg  cgguucaau agaaa cgg gcucaa  c
                                                                               ||||||  ||  |||     ||| ||||||||  ||||||||| ||||| ||| ||||||   
                                                                               aaucuc  gc  acc     ugc CUAUAACC  GCCGAGUUA Uuuuu gcc cgaguu  u
-------------------------------------------------------------------------------      uc  uc   ----g   a        GU         G     c   u      uu 

>csi-MIR162 (-61.00)   [csi-miR162.5:161-181] [csi-miR162:161-181]

aaacuguuuacacugaucugugcugcugauaaaucuuaauuuuuuuuuuugaauuuuuauuuaacagaa       --a      a u a     g    c    c       ac  ug  caa       u  gaa 
                                                                     aauagag   gaguga g c cugga gcag gguu aucgauc  uu  ug   auuuugu gu   a
                                                                     |||||||   |||||| | | ||||| |||| |||| |||||||  ||  ||   ||||||| ||    
                                                                     uuaucuc   cucacu c g GACCU CGUC CCAA UAGCUag  aa  ac   uaaaaca ca   a
--------------------------------------------------------------------c       aac      - - c     A    U    A       cu  gu  --a       -  aua 

>csi-MIR166a (-66.41)   [csi-miR166a:161-182]

-------     uu  ucuu   a        uu      cu   g c        -----------     uu    -uua        -    ca  u    guuucauu 
       gaagc  uu    uug ggggaaug  gucugg  cga g cacuaacu           agauc  ugau    aucucagu ugau  ua auuu        u
       |||||  ||    ||| ||||||||  ||||||  ||| | ||||||||           |||||  ||||    |||||||| ||||  || ||||        u
       cuucg  aa    aac CCCCUUAC  CGGACC  GCU c gugauuga           ucuag  acua    uagaguua auua  au uaaa        u
cgucuau     uu  ---u   C        UU      AG   g a        auuaauagaau     uu    ccca        u    --  u    auaccuuc 

>csi-MIR166b (-69.65)   [csi-miR166b:151-172]

cacgcguccgauuguuugauuuuuuuu      ---uua               uu      cu     g    c     ---uuu  a       uc   cuuucuuucu 
                           gagagg      ugguugaugggaaug  guuugg  cgagg ucau uaggu      ca aauuuuc  gga          u
                           ||||||      |||||||||||||||  ||||||  ||||| |||| |||||      || |||||||  |||           
                           cucucu      gccaacUGCCCUUAC  CGGACC  GCUcu agug auccg      gu uuaaaag  ccu          g
-------------------------uu      uuggca               UU      AG     -    u     uuuauu  a       ga   uuuuauuuuc 

>csi-MIR390 (-63.90)   [csi-miR390:21-41]

------------------aa     a      u    u          G           ugg     augaauauggga    ucu 
                    aguaa gaagaa cugu AAGCUCAGGA GGAUAGCGCCa   gugcc            auga   a
                    ||||| |||||| |||| |||||||||| |||||||||||   |||||            ||||   g
                    ucauu cuucuu ggua uuugaguccu ccuaucgcggu   cacgg            uacu   g
cucggcuagagcucucucuc     -      c    c          a           ---     -guaauaaauag    uug 

>bma-bantam (-38.90)   [bma-bantam:54-74]

-----      -     ua   c     c       a    aug uau 
     gguggg ggcag  ggc uucac augaucu caga   c   c
     |||||| |||||  ||| ||||| ||||||| ||||   |   a
     ccaucu ccguu  UCG AAGUG UACUAGA GUcu   g   u
cucug      u     UA   A     U       -    -ga uuu 

>bma-let-7 (-44.20)   [bma-let-7:33-54]

augcuaac   ccu  a      -     u  aU   G          U      ---a   -gu    
        gac   ga ugauag cuugc cg  GAG UAGUAGGUUG AUAGUU    uga   ugu 
        |||   || |||||| ||||| ||  ||| |||||||||| ||||||    |||   || a
        cug   cu acuauc gggcg gc  uuc aucguccgac ugucaa    gcu   acc 
-----ccc   --c  -      u     u  cg   g          c      agag   aau    

>bma-lin-4 (-38.80)   [bma-lin-4:21-41]

aaa     cuugc     ucU       -AC    -    C   a  a 
   gaaag     gaccu   CCCUGAG   CUCU GCUG GAc gu c
   |||||     |||||   |||||||   |||| |||| ||| || g
   cuuuc     cugga   gggacuc   gaga cgac cug cg u
-ag     -----     ccu       cau    a    a   -  g 

>bma-mir-2a (-31.70)   [bma-miR-2a:50-70]

------------uucuc             -    ca        --ucg a 
                 cgacacgucaaag uggu  gugaugug     c a
                 ||||||||||||| ||||  ||||||||     | a
                 guugUGUAGUUUC ACCG  CACUAUac     g a
uacccagcuguucgcgu             G    -A        uuaaa u 

>bma-mir-2b-1 (-34.20)   [bma-miR-2b:52-72]

--------------ga     a          --       a  uu   ugau 
                gcggu guuguaucgg  cugugau ug  gua    u
                ||||| ||||||||||  ||||||| ||  |||    g
                cgucA CGACGUAGCC  GACACUA ac  cgu    g
gcccucaucguguuca     G          CA       c  -u   uguu 

>bma-mir-2b-2 (-30.82)   [bma-miR-2b:52-72]

--------------ga     a        --         a  uu  murru 
                gcggu guuguauc  gucugugau ug  gu     u
                ||||| ||||||||  ||||||||| ||  ||     g
                cgucA CGACGUAG  CAGACACUA ac  cg     g
gcccucaucguguuca     G        CC         c  -u  uuguu 

>bma-mir-2c (-32.60)   [bma-miR-2c:51-71]

----------caaauc          u    -   uu     a   uguaa 
                ucgugagccg aucg gcu  guggu cau     u
                |||||||||| |||| |||  ||||| |||      
                agcgCUCGGC UAGC CGA  CACUA gua     u
uacuuuuuaauuguga          U    A   --     C   uuggc 

>bma-mir-7 (-30.60)   [bma-miR-7:21-43]

aaaaguuaaa   ga  a      A  -    U     --       uaua 
          gcu  cc ggUGGA GA CUUG GAUUU  UGUUGUu    c
          |||  || |||||| || |||| |||||  |||||||    a
          cgg  gg ccaccu cu gagc cuaaa  acaacga    u
--------ua   -a  c      -  c    -     cg       cuuu 

>bma-mir-9 (-31.60)   [bma-miR-9:15-36]

      caa   ua       U        G     -  a    
guauug   cuu  CUUUGGU AUCUAGCU UAUGA gu agu 
||||||   |||  ||||||| |||||||| ||||| || || u
cauaac   gaa  gaaacca uggaucga auacu cg uca 
      -ac   uc       u        a     u  g    

>bma-mir-34 (-44.80)   [bma-miR-34:23-45]

---------ccaaau  --g    uuu      -        -    U     G     agc 
               ac   ggga   accggg UGGCAGUG UGGU AGCUG UUGUc   a
               ||   ||||   |||||| |||||||| |||| ||||| |||||   u
               ug   uccu   uggucc gccgucac acua ucggc aacag   a
uguccuucuacgacu  aaa    -uu      u        u    -     -     gcu 

>bma-mir-36a (-35.70)   [bma-miR-36a:49-70]

---------------uag    u         c    a    a    ---   a 
                  cuau cgggauagu ucuc cggu gagc   uug a
                  |||| ||||||||| |||| |||| ||||   ||| a
                  gauA GCCUUGUUA AGAG GCCA CUcg   aac a
cugccuuuacauggcaug    C         C    -    -    uuu   u 

>bma-mir-36b (-34.50)   [bma-miR-36b:52-73]

------------uaa    u         c    a    a    ---    ga 
               cugu cgggauagu ucuc cggu gagc   uuga  a
               |||| ||||||||| |||| |||| ||||   ||||   
               gauA GCCUUAUUA AGAG GCCA CUcg   aacu  u
cccuuacaugguaug    C         C    -    -    uua    aa 

>bma-mir-50 (-36.20)   [bma-miR-50:23-46]

gcacuuccugca         -             U  U  UG     ugc 
            uaugcagug uUGAUAUGUCUGA AU CU  GGUUg   a
            ||||||||| ||||||||||||| || ||  |||||    
            augugucac ggcuaugcagacu ua ga  ccaac   a
----------uu         c             c  c  --     uga 

>bma-mir-57 (-32.70)   [bma-miR-57:20-44]

cuuuuu    -uu    guc     U   GU     GC     C  agu 
      gagc   guuc   UACCC GUG  ACCGA  UGUGU Ug   g
      ||||   ||||   ||||| |||  |||||  ||||| ||   a
      cucg   cagg   auggg cac  uggcu  gcaca ac   u
-----u    uuc    -aa     u   --     -a     a  gaa 

>bma-mir-71 (-32.90)   [bma-miR-71:21-39]

agcaugcu   ugu   u           U         ---   g  a a 
        gug   cgg ggUGAAAGACA GGGUAGUGA   gac uu g a
        |||   ||| ||||||||||| |||||||||   ||| || | u
        cac   gcu ccgcuuuuugu cuuaucacu   cug aa c u
--------   uau   -           -         aug   g  - u 

>bma-mir-72 (-46.10)   [bma-miR-72:18-40]

ucaugggacacgggacaA   AA     U     A     acaugauaacgauuaggcucuaguu 
                  GGC  GAUGU GGCAU GCUGA                         u
                  |||  ||||| ||||| |||||                          
                  ccg  uuaca ccgug cgacu                         a
----------------ua   ga     -     a     ucgagauacguuuaacuaauccgag 

>bma-mir-79 (-31.60)   [bma-miR-79:53-74]

      caa   ua       u        g     -  a    
guauug   cuu  cuuuggu aucuagcu uauga gu agu 
||||||   |||  ||||||| |||||||| ||||| || || u
cauaac   gaa  GAAACCA UGGAUCGA AUAcu cg uca 
      -ac   UC       U        A     u  g    

>bma-mir-87a (-39.70)   [bma-miR-87a:51-71]

------------a        -      gg    c a    a    ag auu 
             gugcucgg cgccug  acuu g cuca ccua  u   u
             |||||||| ||||||  |||| | |||| ||||  |    
             cgcgagcU GUGGAC  UGAA C GAGU Ggau  g   u
ccuuuuacgcuuc        U      UU    A -    -    gu aac 

>bma-mir-87b (-32.50)   [bma-miR-87b:48-67]

-----------        cc       c   ca u    a   -  ga 
           uucgcaau  cgccuga acu  g cuca ccu cu  u
           ||||||||  ||||||| |||  | |||| ||| ||  g
           aggcguua  GUGGACU UGA  C GAGU Gga gg  u
caaaccauuga        cU       C   AA -    -   a  au 

>bma-mir-92 (-34.40)   [bma-miR-92:67-86]

cauacu   -    u  g        a u  uu    c    caga    a u 
      gca cuaa ca ucaggucg g cg  ugca uauu    caga g u
      ||| |||| || |||||||| | ||  |||| ||||    |||| | c
      cgu gauu gu agUCCGGC C GC  ACGU AUag    guuu c a
uauuau   c    -  g        C U  UC    U    --cg    a u 

>bma-mir-100a (-30.10)   [bma-miR-100a:21-42]

cggcauggcggcugu     A     U  UU    A         a au 
               cgguu ACCCG AG  UCGA CAUGUGuug u  a
               ||||| ||||| ||  |||| ||||||||| |   
               guuaa ugggc uc  ggcu guacacaau g  u
-------gaucauuc     c     -  uu    -         a au 

>bma-mir-100b (-36.60)   [bma-miR-100b:21-42]

gugugaggua    a     A     UAGAU    A  UG    ga  uu 
          gcac cgguc ACCCG     CCGA CU  UGuu  ga  u
          |||| ||||| |||||     |||| ||  ||||  ||   
          ugug gucag ugggc     ggcu ga  acaa  cu  u
----------    c     a     -uuac    g  gu    gc  uc 

>bma-mir-100c (-29.10)   [bma-miR-100c:11-32]

guuuu     A     U     U   A       u au 
     cgauc ACCCG AGAAC GAA UCGUGuu g  u
     ||||| ||||| ||||| ||| ||||||| |  u
     guuag ugggc ucuug cuu agcacaa c  u
cguuc     c     -     u   -       - gu 

>bma-mir-100d (-37.60)   [bma-miR-100d:16-37]

--u  ug       a cUA     A CU    A       g ga a 
   gu  gugugug c   CCCGU G  CCGA UAUGUGu g  c a
   ||  ||||||| |   ||||| |  |||| ||||||| |  | a
   ca  uacacac g   gggca c  ggcu auacaca c  g u
agu  gu       c aaa     - cu    -       a ac u 

>bma-mir-124 (-34.40)   [bma-miR-124:51-72]

--------   -       cuc  u       -   a       -   uu 
        caa aggacgu   gc uucaccg gug ccuuggu uug  a
        ||| |||||||   || ||||||| ||| ||||||| |||  u
        guu ucuugca   CG AAGUGGC CAC GGAAUca gau  g
uccauauc   c       AAC  U       G   -       u   uu 

>bma-mir-133 (-33.16)   [bma-miR-133:81-101]

u        caag  a   uau  c   cauuu     c       u  uc  a    a   uuauau 
 ugauugga    gu ugc   ga gga     acaua cugguug ag  ga ccaa uug      u
 ||||||||    || |||   || |||     ||||| ||||||| ||  || |||| |||      u
 auugaucu    ca aug   cu ccu     uguAU GACCAAC UC  CU GGUU aac      u
a        ---a  a   -uc  -   --cuu     C       U  CC  -    -   uaaaau 

>bma-mir-137 (-35.20)   [bma-miR-137:55-72]

------------     g   -  g   ag        c          -   aaa 
            gguuc cuu gg aau  guauucuc aguaaugaca uug   u
            ||||| ||| || |||  |||||||| |||||||||| |||   u
            ccaag gaa cu uua  CAUAAGAG UCGUUAUUgu agc   g
accguccaugag     a   a  g   aA        U          u   gaa 

>bma-mir-153 (-33.20)   [bma-miR-153:50-71]

-----uuc    ---    g            g    -      --   u 
        cgcu   cguc aucauuuuugug auua gcaauu  uug u
        ||||   |||| |||||||||||| |||| ||||||  |||  
        gcga   gcag UAGUGAAAACAC UGAU CGUUaa  agc c
uguuugcu    agu    G            -    A      ua   u 

>bma-mir-228 (-30.54)   [bma-miR-228:16-38]

    g     ua   A    C   A A     U     uucacc 
ugcu gcaca  cuc AUGG ACU G UGAAU CACGG      u
|||| |||||  ||| |||| ||| | ||||| |||||       
auga cgugu  gag uacc uga c gcuua gugcc      c
    a     -c   a    u   c -     u     uauccu 

>bma-mir-236 (-33.60)   [bma-miR-236:51-73]

gaau   u      -        a  c       -gug  a 
    ggc gucguc uuaccuga ca uauuaga    uc u
    ||| |||||| |||||||| || |||||||    ||  
    ccg UAGCAG AAUGGACU GU AUAAUcu    ag a
----   u      U        -  C       auaa  u 

>bma-mir-279 (-37.70)   [bma-miR-279:51-70]

--------------   uu          c        u       ugg aug 
              uca  cguagcugag augguucu agucaug   c   u
              |||  |||||||||| |||||||| |||||||   |    
              agu  guauCGACUC UACCAAGA UCAGUac   g   a
aauucuuacggccc   --          A        -       uua aga 

>bma-mir-281 (-34.60)   [bma-miR-281:53-74]

-ggu        a  -ac         -ca     u      --  u 
    gaacgcag cg   aaagagagc   ucugu gacagu  ca a
    |||||||| ||   |||||||||   ||||| ||||||  || u
    cuuguguc gu   UUUCUCUCG   AGGUA CUGUca  gu a
gaau        c  acA         UUA     -      ac  u 

>api-mir-137 (-28.10)   [api-miR-137:52-73]

a     g ug  cc  c       ug  ac      cauau 
 acuug u  gc  cg guauucu  gg  auaaca     u
 ||||| |  ||  || |||||||  ||  ||||||      
 ugaac a  uG  GC CAUAAGA  UC  UAUugu     u
-     - gu  AU  A       GU  GU      cagaa 

>api-mir-190 (-27.02)   [api-miR-190:7-30]

uuc                AU         uuaua 
   gugAGAUAUGUUUGAU  UCUUGGUUG     u
   ||||||||||||||||  |||||||||     u
   cauuuuauacaggcua  agagccagc     u
---                --         caaag 

>api-mir-10 (-37.60)   [api-miR-10:14-34]

-    u      cu   -  G    U           ugaa 
 augc cuacau  ACC CU UAGA CCGAAUUUGUu    a
 |||| ||||||  ||| || |||| |||||||||||    a
 uacg ggugug  ugg ga aucu ggcuuaaacag    a
a    u      uu   a  g    u           cggc 

>api-mir-iab-4 (-23.10)   [api-miR-iab-4:7-28]

c     -         A  U    C   A u   uua 
 ccugu ACGUAUACU AA GUAU CUG g gca   u
 ||||| ||||||||| || |||| ||| | |||   a
 ggaca ugcauauga uu caua ggc c ugu   a
-     a         c  c    u   - -   caa 

>api-bantam (-22.86)   [api-bantam:48-70]

cgaagc          uu     ug     uuuauc 
      ugguuuucac  ugauc  ucaga      a
      ||||||||||  |||||  |||||      u
      AUCGAAAGUG  ACUAG  AGUcu      u
--uUUA          UU     --     uacuug 

>api-mir-1923 (-16.10)   [api-miR-1923:58-84]

aacu      uuaaaau    -  uu  aua    ---uuu   a   u 
    ugccau       gcug gc  cg   acgu      uca uaa a
    ||||||       |||| ||  ||   ||||      ||| |||  
    gCGGUG       UGAC CG  GC   UGCG      agu auu u
---g      ------C    A  UU  -CA    CUAAuc   a   u 

>api-mir-184 (-23.70)   [api-miR-184:38-59]

--------        -       -  uug   gca 
        ccuuauca uucuucg cc   ugu   a
        |||||||| ||||||| ||   |||   u
        GGAAUAGU AAGAGGC GG   aca   u
uaugguCG        C       A  Uca   aau 

>api-mir-276 (-31.90)   [api-miR-276:52-73]

ga   cu    a     ag          uuca   ua 
  cca  agcg gguau  aguuccuacg    aau  u
  |||  |||| |||||  ||||||||||    |||  u
  ggu  UCGU CCAUA  UCAAGGAUgc    uug  a
-a   UC    G     CU          -uca   ua 

>api-mir-281 (-25.30)   [api-miR-281:40-60]

---        -ua     c      a  auu 
   aagagagc   uccgu gacagu ua   u
   ||||||||   ||||| |||||| ||   u
   UUCUCUCG   AGGUA CUGUca au   u
uaU        UUG     -      c  caa 

>api-mir-993 (-41.40)   [api-miR-993:55-77]

---         uc    c      uc          uaga   a 
   cauccguga  uacc uguaga  cgggcuuuug    aua u
   |||||||||  |||| ||||||  ||||||||||    ||| c
   guaggcauU  AUGG ACAUCU  GCUCGAAGac    uau g
aag         CU    -      CU          -uug   a 

>ath-MIR2933a (-35.20)   [ath-miR2933a:59-80]

gaaa   g  gg        ag        ga a g     - g  gg       g 
    uuc uu  cgauuuug  ugaaaucg  g g gaauu c uc  cgauuuu a
    ||| ||  ||||||||  ||||||||  | | ||||| | ||  |||||||  
    aag ag  gcuaaagu  guuuuagc  C C CUUAA G AG  GCUAAAG g
cuaa   g  ag        ga        gg - G     A G  AG       u 

>ath-MIR2933b (-33.90)   [ath-miR2933b:59-80]

gaaa   g  gg        ag        ga a g     - g  gg       g 
    uuc uu  cgauuuug  ugaaaucg  g g gaauu c uc  ugauuuu a
    ||| ||  ||||||||  ||||||||  | | ||||| | ||  |||||||  
    aag ag  gcuaaagu  guuuuagc  C C CUUAA G AG  GCUAAAG g
cuaa   g  ag        ga        gg - G     A G  AG       u 

>ath-MIR2934 (-49.96)   [ath-miR2934:10-30]

uuuau     C                    u      -------------u    ucau       a 
     aaccU UUUCUGCAAACGCCUUGGAu uucuuu              ggcu    guuguuc u
     ||||| |||||||||||||||||||| ||||||              ||||    |||||||  
     uugga aaagauguuuguggaaccua aagaaa              ccga    uaauaag u
aaacu     a                    c      uuuauucuacuuuu    ----       a 

>ath-MIR2935 (-39.10)   [ath-miR2935:20-41]

    ucuc      agg     A     AC   CG        cuuuu  uuu  ua     g   ag      a 
cuug    uacuua   cuUGG AUCAC  GGU  UCAUUCau     ga   gg  gucug cga  uuagaa u
||||    ||||||   ||||| |||||  |||  ||||||||     ||   ||  ||||| |||  |||||| c
gaac    augagu   gaauu uagug  ccg  ggugggua     cu   cc  uaggu guu  aguuuu a
    --uu      -ga     a     au   au        --aau  --u  ua     g   -g      a 

>ath-MIR2936 (-61.56)   [ath-miR2936:15-36]

           --------agc       -       C      Gauaccaa   ---u    aauc            -----uauaau     cau 
ccauuuucgaa           CUUGAGA GAGAGAA ACAGAC        cuu    cuuc    ucguugccgcag           uaucu   u
|||||||||||           ||||||| ||||||| ||||||        |||    ||||    ||||||||||||           |||||    
gguaaaagcuu           gaacuuu cucucuu ugucug        gaa    gaag    agcggcggcguc           auagg   c
           cauucaccaaa       u       u      aaaaauaa   cauc    -aac            uuccucucuau     cuc 

>ath-MIR2937 (-218.40)   [ath-miR2937:254-274]

       ------   -ua     c       c       a   c       g  u   c                               a      a                      c        c    cuacaaaaca       c            aa   -aa                gcuagugaggccaguaccguaguuaauauu 
cauuuuc      cgu   guaac uauuggc auuugau acu caacaag ac aau aaacgagaaccauuugaugauguuaauggug aacaca gacccaucagcaaacucuccuc aaugguca acca          uuagauc uuuaaugacucc  caa   cucuuaugaugugggu                              g
|||||||      |||   ||||| ||||||| ||||||| ||| ||||||| || ||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||          ||||||| ||||||||||||  |||   ||||||||||||||||                              a
guaaaag      gua   cauug auaaccg uaaacua uga guuguuu ug uua uuugcucuugguaaacuacuauaauuacuac uugugu cuggguaguuguuugggaggag uuacuagu uggu          aaucuag aaauuaCUGAGG  GUU   GAGAAUAcuacaccua                              u
       caccau   ucg     u       a       c   u       a  c   a                               g      g                      a        u    ----------       a            AA   GUC                aagaaaacaucugucagucugguuuuugug 

>ath-MIR2938 (-36.70)   [ath-miR2938:75-95]

          c         uu     ucuaau  g        cu  ucca 
aaaaacugga cccucuuaa  agauc      uu uuuucuuu  uc    a
|||||||||| |||||||||  |||||      || ||||||||  ||     
uuuuuGACCU GGGAGAGUU  UCUAG      aa aaaagaaa  ag    a
          U         -U     ----uu  g        -c  uuua 

>ath-MIR2939 (-48.90)   [ath-miR2939:79-99]

gu     --cc   a    u c   a     a    u        --         a      a 
  uguca    guu gucu u acu cgaug cuua uguugugu  uaccaaaga aacaua g
  |||||    ||| |||| | ||| ||||| |||| ||||||||  ||||||||| |||||| g
  acggu    caa caga a uga gcUAC GAAU ACAACACG  AUgguuucu uugugu c
-c     aaaa   -    c u   c     C    C        CA         g      u 

>rco-MIR156a (-48.30)   [rco-miR156a:6-26]

----    gU      -    A           u    uucuu    aucg 
    gggc  GACAGA AGAG GUGAGCACAca gguu     gcau    a
    ||||  |||||| |||| ||||||||||| ||||     ||||    u
    cccg  cugucu ucuc cacucgugugu ucga     cgua    a
ucca    --      a    c           c    -uuuu    guuc 

>rco-MIR156b (-48.50)   [rco-miR156b:6-26]

-   -a         -    -        A        uuu     a 
 gaa  uUGACAGAA GAGA GUGAGCAC cagaggca   guaua a
 |||  ||||||||| |||| |||||||| ||||||||   |||||  
 cuu  aacugucuu cucu cacucgug guuuucgu   cauau u
c   cg         u    u        c        ucc     c 

>rco-MIR156c (-56.70)   [rco-miR156c:6-26]

---  a         -             A  u   acu   cu     a 
   gg ggUGACAGA AGAGAGUGAGCAC ca ggu   uuc  gcaug a
   || ||||||||| ||||||||||||| || |||   |||  |||||  
   cc ccacugucu ucucucauucgug gu ccg   aag  cguac u
ccg  -         a             c  u   ---   cu     u 

>rco-MIR156d (-51.20)   [rco-miR156d:6-26]

--  ga         -     -       A   ag   auu        
  ga  cUGACAGAA GAGAG UGAGCAC cgc  gca   guaugga 
  ||  ||||||||| ||||| ||||||| |||  |||   |||||| a
  cu  gacugucuu cucuc acucgug gug  cgu   cauaccg 
ac  uc         u     c       c   ga   cac        

>rco-MIR156e (-55.70)   [rco-miR156e:6-26]

--a   u           -          -a       uu    u      
   aug UGACAGAAGAG AGAGAGCACA  cccggca  aggc aaaga 
   ||| ||||||||||| ||||||||||  |||||||  |||| |||| g
   uac acugucuucuc ucucucgugu  ggguugu  uccg uuucu 
cac   u           c          ga       -u    -      

>rco-MIR156f (-44.30)   [rco-miR156f:6-26]

--uuuu            -U          --    a      c   cga 
      gUUGACAGAAGA  AGAGAGCACa  acuu acauac caa   c
      ||||||||||||  ||||||||||  |||| |||||| |||    
      caacugucuucu  uuucucgugu  ugaa uguaug guu   a
uauauu            uu          uu    g      u   uag 

>rco-MIR156g (-44.20)   [rco-miR156g:6-26]

--  u  U           -         u  c  -   a     u  ug 
  ug ug UGACAGAAGAU AGAGAGCAC ga ga uga augca ga  g
  || || ||||||||||| ||||||||| || || ||| ||||| ||   
  ac ac acugucuucug ucucucgug uu cu acu uacgu cu  g
cc  u  u           a         u  c  c   c     -  ca 

>rco-MIR156h (-45.70)   [rco-miR156h:6-26]

--ugu  U         -              u  -   u     auga 
     ug UGACAGAAG AUAGAGAGCACaga ga uga gugca    c
     || ||||||||| |||||||||||||| || ||| |||||    u
     ac acugucuuc uaucucucguguuu cu acu uacgu    u
cuucc  u         g              c  c   c     cuuu 

>rco-MIR159 (-85.60)   [rco-miR159:155-175]

--ga            ga       ua        --ugau      auu     g     c    g uc      c     aag     au 
    guggagcuccuu  aguccaa  gaggaucu      ggguag   gagcu cugag uaug a  ccacag ccuau   cagag  u
    ||||||||||||  |||||||  ||||||||      ||||||   ||||| ||||| |||| |  |||||| |||||   |||||  a
    cAUCUCGAGGGA  UUAGGUU  uuccuaga      uccauu   uucga gacuc auac u  gguguu ggaua   guuuu  u
ucua            AG       Ug        uuaugu      -ac     g     u    g uc      c     --g     aa 

>rco-MIR160a (-55.40)   [rco-miR160a:6-26]

--uu      C       C               a  uu      a 
    gugUGC UGGCUCC UGUAUGCCAuuugug ag  caucag a
    |||||| ||||||| ||||||||||||||| ||  ||||||  
    cguacg accgagg acguacgguagacgc uc  gugguu g
ucgu      u       a               c  ug      c 

>rco-MIR160b (-48.20)   [rco-miR160b:6-26]

-- gu     C       C          aa  uag   u  u   cu 
  g  uaUGC UGGCUCC UGUAUGCCAc  gc   agu ca ucc  u
  |  ||||| ||||||| ||||||||||  ||   ||| || |||  c
  c  auacg accgagg gcgugcggug  cg   ucg gu agg  c
cu uc     a       a          gc  uua   -  u   ua 

>rco-MIR162 (-35.50)   [rco-miR162:76-96]

--uca     g    c    c       ucuuccuggaagauuuuguugu 
     cugga gcag gguu aucgauc                      g
     ||||| |||| |||| |||||||                      a
     GACCU CGUC CCAA UAGCUag                      a
uucgc     A    U    A       cuaaguacgcaaaauaaaaaca 

>rco-MIR164a (-38.29)   [rco-miR164a:6-26]

--cu  c        CA               cuuucuu 
    ug UGGAGAAG  GGGCACGUGCAauuc       u
    || ||||||||  |||||||||||||||        
    ac accucuuc  cucgugcacguuaag       c
gggu  a        ac               ccucucc 

>rco-MIR164b (-44.35)   [rco-miR164b:6-26]

-  -  c        CA             --ccccaacac   -     uuc 
 cc ug UGGAGAAG  GGGCACGUGCAaa           ucc uuggu   u
 || || ||||||||  |||||||||||||           ||| |||||   u
 gg ac accucuuc  cucgugcacguuu           agg aaccg   g
u  u  a        cc             ucucauaucaa   u     uaa 

>rco-MIR164c (-39.40)   [rco-miR164c:6-26]

--  a     A    CA         CAuu      -  augcauaauugaacauaca 
  ca gaUGG GAAG  GGGCACGUG    acuaac uc                   u
  || ||||| ||||  |||||||||    |||||| ||                   a
  gu cuacc cuuc  cccguguac    ugauug ag                   c
ca  a     c    ug         uucu      g  gucguucuuuuuacgcaua 

>rco-MIR164d (-43.70)   [rco-miR164d:6-26]

--  u         GC           U      a    aa g 
  ca gcUGGAGAA  AGGGCACAUGC agauuu ucag  u a
  || |||||||||  ||||||||||| |||||| ||||  |  
  gu cgaccucuu  uuccguguacg uuuaag aguc  a a
ag  u         gu           u      -    ca a 

>rco-MIR166a (-56.90)   [rco-miR166a:124-144]

--           uu         a   ccua    ----u     uguuucaguuucauucaauauacugaaaaa 
  uaaggggaaug  gucugguuc agg    ccua     ugauc                              u
  |||||||||||  ||||||||| |||    ||||     |||||                              c
  auuCCCCUUAC  CGGACCAGG Ucc    ggau     acuag                              u
ua           UU         C   ucua    ucuuu     uuuagcugguguccuaucaaaggguauaug 

>rco-MIR166b (-58.00)   [rco-miR166b:94-114]

--  a        uu      cu   g         ---ua    u       u     ug 
  ug ggggaaug  gucugg  cga gucacuaau     gauc augauuu auuuu  c
  || ||||||||  ||||||  ||| |||||||||     |||| ||||||| |||||  u
  ac CCCCUUAC  CGGACC  GCU cagugauug     cuag ugcuaga uagaa  u
ua  c        UU      AG   g         uuaug    u       -     uu 

>rco-MIR166c (-38.50)   [rco-miR166c:66-86]

--  a  u     uu           u        u  u   aag 
  ug gg gaaug  gucugguucga gucauuca uu gug   c
  || || |||||  ||||||||||| |||||||| || |||   u
  ac CC CUUAC  CGGACCAGGCU uaguaagu aa uac   g
ca  c  C     UU           u        c  u   aaa 

>rco-MIR166d (-51.20)   [rco-miR166d:67-87]

--  a        cu             c     ----   -     c 
  ug ggggaaug  gucugguucgaga cauuc    gcu ugaug c
  || ||||||||  ||||||||||||| |||||    ||| ||||| a
  ac CCCCUUAC  CGGACCAGGCUcu guaag    cga acuac c
ca  c        UU             a     ucuu   c     c 

>rco-MIR166e (-56.10)   [rco-miR166e:106-126]

--  a        uu      cu   g   u  c  --u     --   uucaauuuu    auag    a 
  ug ggggaaug  gucugg  cga gac cu uu   ugauc  ccu         cucc    aucc a
  || ||||||||  ||||||  ||| ||| || ||   |||||  |||         ||||    |||| u
  ac CCCCUUAC  CGGACC  GCU cug ga ag   acuag  ggg         gagg    uagg a
ua  c        UU      AG   g   u  c  uuu     au   --------u    guua    c 

>rco-MIR167a (-51.30)   [rco-miR167a:6-26]

--aaa     A    - -C              uu        agaca   gaaagaa      agaua 
     ggUGA GCUG C  AGCAUGAUCUAgcu  gguuagug     gcu       agauac     a
     ||||| |||| |  ||||||||||||||  ||||||||     |||       ||||||      
     ucacu cgac g  ucguacuggaucga  ccaaucgu     cga       ucuaug     c
cuucc     c    a uc              uc        gauaa   ------a      guaca 

>rco-MIR167b (-37.40)   [rco-miR167b:6-26]

--ucagu           G        Aa    -     cc 
       UGAAGCUGCCA CAUGAUCU  aucu uccuc  u
       ||||||||||| ||||||||  |||| |||||  c
       acuuugacggu guacuaga  uaga aggag  g
guugccc           -        -c    g     uu 

>rco-MIR167c (-41.30)   [rco-miR167c:6-27]

--    u           G          ag       a 
  auag UGAAGCUGCCA CAUGAUCUGG  cuuuucu u
  |||| ||||||||||| ||||||||||  |||||||  
  uguc acuuugacggu guacuagauc  gagagga c
gu    c           -          -a       c 

>rco-MIR168 (-51.40)   [rco-miR168:6-26]

--cua     C          U     A ug   g       uauu      gauuu    gc   g 
     auUCG UUGGUGCAGG CGGGA c  auu gcuuuuc    ucuaau     ccag  ggc a
     ||||| |||||||||| ||||| |  ||| |||||||    ||||||     ||||  ||| a
     uaagu aacuacguuc gcccu g  uaa ugaaagg    agauua     gguu  uug a
gaagc     c          c     a gu   g       ---u      gaacu    -a   a 

>rco-MIR169a (-40.90)   [rco-miR169a:6-26]

--     C          GA        cauc   u          u 
  gaaua AGCCAAGGAU  CUUGCCGG    aau uauauauaua a
  ||||| ||||||||||  ||||||||    ||| ||||||||||  
  cuuau ucgguucuug  gaacggcu    uua auauauauau u
ua     a          uc        --au   u          a 

>rco-MIR169b (-37.04)   [rco-miR169b:6-26]

--uaauuC         UG         cac   cuauaua   cuu 
        AGCCAAGGA  ACUUGCCGG   agc       ugu   c
        |||||||||  |||||||||   |||       |||   u
        ucgguucuu  ugaacggcc   ucg       aca   a
auguuaca         gu         --a   aucgucg   cuc 

>rco-MIR169c (-45.60)   [rco-miR169c:6-26]

--   ccU            A         cauauauaaaauucuuucugucgccag 
  gga   GAGCCAAGGAUG CUUGCCGcg                           c
  |||   |||||||||||| |||||||||                            
  cuu   cucgguucuuac gaacggugc                           a
ca   cau            a         cuuuugggaaaaguccgauagcuacua 

>rco-MIR171a (-42.50)   [rco-miR171a:67-87]

--aa   g        uc         a     a   u     aaa 
    acg gauauugg  cgguucaau agaaa cag gcuca   u
    ||| ||||||||  ||||||||| ||||| ||| |||||    
    uGC CUAUAACC  GCCGAGUUa uuuuu guc cgggu   g
cacg   A        GU         g     c   c     auu 

>rco-MIR171b (-54.10)   [rco-miR171b:66-86]

--     a        ug             g u  -uu      u 
  guacg gauauugg  cgguucaaucaga a ca   gcucua a
  ||||| ||||||||  ||||||||||||| | ||   ||||||  
  cguGC CUAUAACC  GCCGAGUUaguuu u gu   cgagau u
ua     A        GU             g u  uuu      a 

>rco-MIR171c (-52.10)   [rco-miR171c:62-82]

--ucu                     a  cg   c       u 
     gauguuggcaugguucaauca au  aag acucagc g
     ||||||||||||||||||||| ||  ||| ||||||| c
     CUAUAACCGUGCCGAGUUAGU ua  uuc ugagucg c
uaccg                     c  au   u       u 

>rco-MIR171d (-43.40)   [rco-miR171d:99-119]

--ugu         c       c     caaaaacgauguguuuucucaagcauuuguuuuu 
     gauguuggc cgguuca ucaga                                  c
     ||||||||| ||||||| |||||                                   
     CUAUAACCG GCCGAGU AGUuu                                  g
ugauu         U       U     ccgguaauacgaacacaauuguauaguucgcaaa 

>rco-MIR171e (-46.20)   [rco-miR171e:59-79]

--           a            a  c   ucu     a 
  ggggauguugg auggcucaauca au aaa   cccaa g
  ||||||||||| |||||||||||| || |||   |||||  
  cccCUAUAACC UGCCGAGUUAGU ua uuu   ggguu u
ac           G            c  a   ccu     u 

>rco-MIR171f (-42.40)   [rco-miR171f:86-106]

--  u         c       c     -    ---a   cuau    uc  cu  u 
  ug gauauuggc ugguuca ucaga caug    aac    cccu  uc  gc u
  || ||||||||| ||||||| ||||| ||||    |||    ||||  ||  || a
  ac CUAUAACCG GCCGAGU AGUuu guau    uug    ggga  ag  cg u
ug  u         U       U     u    aucg   uugu    ua  uc  u 

>rco-MIR171g (-38.30)   [rco-miR171g:64-84]

--  c          a         c  a  -  -ga      cau 
  ag gauguuggug gguucaauc ga ga cg   uuuaca   u
  || |||||||||| ||||||||| || || ||   ||||||    
  uc CUAUAACCGC CCGAGUUAG cu cu gc   aaaugu   c
uu  a          G         A  -  a  agg      ugu 

>rco-MIR172 (-51.18)   [rco-miR172:119-139]

--   a  g                a  aacuu    -u    -   g       uu ug ucccuuuucuuuuu 
  cug ug agcaucaucaagauuc ca     uauc  aggg cua uggguug  g  g              c
  ||| || |||||||||||||||| ||     ||||  |||| ||| |||||||  |  |              u
  ggc AC UCGUAGUAGUUCUAAG gu     auag  uccc gau accuaac  c  u              u
ac   G  G                G  -----    uu    u   a       uu gu cucuuuuucuuuuu 

>rco-MIR319a (-80.50)   [rco-miR319a:186-206]

--uu   a     uu          cuc     u   gg            a -  g   ac       uc  aauacugaguuaaaaaguucagaaaacaaaagg 
    aag gagcu  cuucagucca   auggg ggc  uaggauuuaauu g cu ccg  ucauuca  ca                                 g
    ||| |||||  ||||||||||   ||||| |||  |||||||||||| | || |||  |||||||  ||                                 g
    uUC CUCGA  GAAGUCAGGU   ugucc ucg  auucuaaguuaa c ga ggc  aguaagu  gu                                 c
ucau   C     GG          Uca     u   -a            a a  g   gu       ga  aaaugacccauuuggaagaaaagaugucguggg 

>rco-MIR319b (-86.50)   [rco-miR319b:154-174]

--aa  a                   uc  a       gag       acu     g u ac       u       cu    a  aucaa 
    ga ggagcucucuucaguccag  ca ggcgguu   ggcuggg   uagcu c g  ucguugg ucaagag  cauc uc     u
    || |||||||||||||||||||  || |||||||   |||||||   ||||| | |  ||||||| |||||||  |||| ||      
    cU CCUCGAGGGAAGUCAGGUU  gu cugucgg   uugacuu   gucga g c  agcaacc aguuuuu  guag ag     g
uaac  C                   cu  a       -ua       -gu     g u ga       u       cu    -  aaugu 

>rco-MIR319c (-78.10)   [rco-miR319c:163-183]

--uu   a                 cu      cg  c    guuu    --      g   ac        u  aa    c   aaa  ggag au 
    aag gagcucucuucagucca  cauggg  gg gaag    ugaa  uuaucu ccg  ucauucau ca  caca uag   ag    c  u
    ||| |||||||||||||||||  ||||||  || ||||    ||||  |||||| |||  |||||||| ||  |||| |||   ||    |   
    uUC CUCGAGGGAAGUCAGGU  gugucu  uc cuuc    acuu  aauaga ggc  aguaagug gu  gugu auc   uc    g  a
cgau   C                 Uc      cu  u    --au    ua      g   gu        u  aa    u   --g  gaua aa 

>rco-MIR319d (-89.40)   [rco-miR319d:162-182]

--cca                      --a   a   cuu  a  c  c  a  ---   g    cu         a   aau      caagu     a 
     aaggagcuccuuucaguccaau   ugg ggg   ag ag gg aa ga   gcu ccau  caugcauua ggc   acuuga     uuuuc c
     ||||||||||||||||||||||   ||| |||   || || || || ||   ||| ||||  ||||||||| |||   ||||||     ||||| a
     UUCCUCGAGGGAAGUCAGGUUa   acc ccc   uc uc cc uu cu   cga ggug  guacguggu ccg   ugaacu     aaaag g
cuuuc                      ccc   -   --u  c  -  -  c  caa   g    ug         -   guu      ---cu     u 

>rco-MIR390a (-52.50)   [rco-miR390a:6-26]

--    u          G           -       cauug      -ua    c 
  cugu AAGCUCAGGA GGAUAGCGCCg ugaagau     auauau   uugu c
  |||| |||||||||| ||||||||||| |||||||     ||||||   ||||  
  gaca uuugaguccu ccuaucgcggu auuucug     uguaua   aaca a
ug    c          a           g       --aua      caa    a 

>rco-MIR390b (-48.20)   [rco-miR390b:6-26]

-     -          G         C     -u     uguguuuuuaugaauaugacu 
 cuaau AAGCUCAGGA GGAUAGCGC augga  ggaua                     c
 ||||| |||||||||| ||||||||| |||||  |||||                     g
 gguua uuugaguccu ccuaucgcg uaucu  ucuau                     u
u     c          a         a     uc     uuuuuucguucgguucuuuuc 

>rco-MIR393 (-43.06)   [rco-miR393:6-26]

--aaag    A            U         uc       ---accuaa    g 
      uUCC AAGGGAUCGCAU GAUCuaaug  guugggu         auga u
      |||| |||||||||||| |||||||||  |||||||         |||| u
      aagg uucccuagcgua cuagguuac  uaaccua         uauu a
ccucug    a            -         -u       auaucuaaa    a 

>rco-MIR395a (-40.00)   [rco-miR395a:49-69]

-- u          ug         cug   c   aa 
  c agaguucccu  aacacuuca   gga gaa  u
  | ||||||||||  |||||||||   ||| |||   
  g uCUCAAGGGG  UUGUGAAGU   ccu cuu  c
ug u          GU         Caa   u   ac 

>rco-MIR395b (-47.56)   [rco-miR395b:72-92]

--            ug c       u      -uauuau    ccuuaa 
  cuggaguucccc  g cgcuuca uggggc       auac      u
  ||||||||||||  | ||||||| ||||||       ||||       
  gauCUCAAGGGG  U GUGAAGU aucccg       ugug      u
ug            GU U       C      uccuuau    uacaua 

>rco-MIR395c (-40.52)   [rco-miR395c:57-77]

-    -        ug         c     -u   aaaag 
 cuag aguucccu  agcacuuca uggga  gaa     g
 |||| ||||||||  ||||||||| |||||  |||     u
 gguc UCAAGGGG  UUGUGAAGU auccu  cuu     c
u    C        GU         C     uc   cugac 

>rco-MIR395d (-41.40)   [rco-miR395d:62-82]

-    -        ug c       u         uu    aag 
 cuag aguucccu  a cacuuca uguggauua  cuuc   c
 |||| ||||||||  | ||||||| |||||||||  ||||    
 gguc UCAAGGGG  U GUGAAGU acauuuggu  gagg   u
u    C        GU U       C         -u    aac 

>rco-MIR395e (-40.00)   [rco-miR395e:49-69]

-- u          ug         cug   c   aa 
  c agaguucccu  aacacuuca   gga gaa  u
  | ||||||||||  |||||||||   ||| |||   
  g uCUCAAGGGG  UUGUGAAGU   ccu cuu  c
ug u          GU         Caa   u   ac 

>rco-MIR396 (-49.40)   [rco-miR396:6-26]

--  c                       c    ucuucuucuucuucuucuuagauuucuuu 
  ug uuUUCCACAGCUUUCUUGAACUU uucu                             c
  || ||||||||||||||||||||||| ||||                              
  ac agagggugucgaaagaacuugaa aaga                             u
gu  a                       u    cacgguguaguucuuucuauauccguuac 

>rco-MIR397 (-54.50)   [rco-miR397:6-26]

--      C                A    u  cccuacaugacauauuucuguugguuaauucauuaccaauauccc 
  aaacaU AUUGAGUGCAGCGUUG UGaa uc                                             u
  |||||| |||||||||||||||| |||| ||                                             u
  uuugua uaacuuacgucgcgac acuu ag                                             c
uu      c                c    u  uagguuuugguagauaaggguuuuuccaaaugaagaaaaaaauuu 

>rco-MIR398a (-49.20)   [rco-miR398a:66-86]

--       a    cuc            c     u   cu  -  c 
  ccagagg gugg   ccugagaacaca gugca ugg  cu ca c
  ||||||| ||||   |||||||||||| ||||| |||  || || u
  gguUUCC CACU   GGACUCUUGUGU cacgu acc  ga gu u
gg       C    ---            c     c   uu  u  u 

>rco-MIR398b (-51.55)   [rco-miR398b:101-121]

--cua    a            u      --u       cuu  c    -uau    uuaucaucu 
     cagg gcgaccugagaa cacaug   ggacauu   ag uaua    accc         u
     |||| |||||||||||| ||||||   |||||||   || ||||    ||||          
     GUCC CGCUGGACUCUU GUGUac   cuugugg   uc augu    uggg         c
gggcc    C            -      uuu       -uu  -    uauu    uuuuauucu 

>rco-MIR399a (-39.60)   [rco-miR399a:68-88]

-- ug       c     gc           ----ag    cac  gc 
  u  uagggca cucuu  uuggcagguaa      ggga   ua  u
  |  ||||||| |||||  |||||||||||      ||||   ||  a
  a  GUCCCGU GAGAG  AACCGUucguu      cccu   au  g
uc gu       U     GA           caauaa    aca  ac 

>rco-MIR399b (-43.56)   [rco-miR399b:81-101]

--uuaca       a     a      u  a  -     -a  u    aaacca 
       gggcaaa ucucc uuggca gg ac cacua  ga aucc      a
       ||||||| ||||| |||||| || || |||||  || ||||      u
       CCCGUUU AGAGG AACCGU cc ug gugau  cu uagg      c
auaacGG       -     A      c  g  u     aa  u    accgaa 

>rco-MIR399c (-37.40)   [rco-miR399c:71-91]

--uuaca       ac    a        c   cag  uaa    u    c 
       gggcaaa  cuuc uuggcaug ugc   ac   gaug ggga g
       |||||||  |||| |||||||| |||   ||   |||| ||||  
       CCCGUUU  GAGG AACCGUac acg   ug   cuau ccuu c
auagcGG       -A    A        u   ---  -ug    -    a 

>rco-MIR399d (-45.10)   [rco-miR399d:78-98]

--          u     gc         ---aau   a    g   a    a 
  ucguagggca cucuc  uuggcaggc      gau ugaa uga gcua a
  |||||||||| |||||  |||||||||      ||| |||| ||| |||| u
  aguGUCCCGU GAGAG  AACCGUucg      cua guuu auu cgau u
uc          C     GA         guaacc   -    g   a    u 

>rco-MIR399e (-43.80)   [rco-miR399e:83-103]

--uuaca      au      a        ua  -    -     -c    a  uaa 
       gggcaa  aucucc uuggcagg  gc cacu uuaga  augc uu   a
       ||||||  |||||| ||||||||  || |||| |||||  |||| ||    
       CCCGUU  UAGAGG AACCGUcu  cg guga aauuu  uacg ag   u
uuaacGA      --      A        uc  u    c     au    -  uuu 

>rco-MIR399f (-36.80)   [rco-miR399f:62-82]

--   c                 a    -cu     caag gac 
  uua ugagcaagucuucuuug caga   uccac    c   a
  ||| ||||||||||||||||| ||||   |||||    |    
  aau ACUCGUUUAGAGGAAAC GUcu   aggug    g   u
uc   C                 C    auu     caaa gua 

>rco-MIR403a (-36.10)   [rco-miR403a:70-90]

--  u u                    ucaggccauccaugucaggg 
  uc c aguuugugugugaaucuaau                    c
  || | ||||||||||||||||||||                    c
  ag G UCAAACACGCACUUAGAUUg                    c
cu  u C                    ugguacccuauccuaaucau 

>rco-MIR403b (-39.00)   [rco-miR403b:73-93]

--  u u                g   c    ---ca  --aa    guuc 
  uc c aguuugugcgugaauc agc ccau     uc    ggcc    a
  || | |||||||||||||||| ||| ||||     ||    ||||    u
  ag G UCAAACACGCACUUAG UUg ggua     ag    ccgg    u
cu  u C                A   u    accua  cacc    aguu 

>rco-MIR408 (-49.60)   [rco-miR408:67-87]

--a   acu     c          u  a        cu      a 
   aag   gggaa aggcagugca gg uggggcua  aacaga a
   |||   ||||| |||||||||| || ||||||||  |||||| a
   uuC   CCCUU UCCGUCACGU cc aucucggu  uugucu c
gcc   GGU     C          C  c        -u      a 

>rco-MIR535 (-46.00)   [rco-miR535:6-26]

--  ug          G  A         u  ua  cu      a 
  uu  uUGACAACGA AG GAGCACGCu gu  gc  ucaugu a
  ||  |||||||||| || ||||||||| ||  ||  |||||| g
  ga  aacuguugcu uc cucgugcga ca  cg  gguaca g
ua  gu          a  c         c  ca  uu      a 

>rco-MIR160c (-45.60)   [rco-miR160c:6-26]

-- ua     C         GA      uc  a    c       ac 
  g  ucUGC UGGCUCCCU  AUGCCA  ua gaag uugucaa  a
  |  ||||| |||||||||  ||||||  || |||| |||||||   
  c  ggacg acugagggg  uacggu  au cuuu aacgguu  g
ug cc     u         ag      uu  c    u       gu 

>aae-mir-184 (-36.80)   [aae-miR-184:55-76]

cc    u     ua         -     g  c  c  -    ua 
  ggug auucg  cccuuauca uucuu cg cc gu guua  u
  |||| |||||  ||||||||| ||||| || || || ||||   
  ccac ugggc  GGGAAUAGU AAGAG GC GG ca cggu  u
uu    -     cC         C     -  A  U  g    ug 

>aae-mir-275 (-35.80)   [aae-miR-275*:16-37] [aae-miR-275:56-75]

auccuuuc    u         -AG    A   GA    -   u a 
        gauu cgCGCGCUA   CAGG ACC  GACu uug c u
        |||| |||||||||   |||| |||  |||| ||| |  
        cuag gcgCGCGAU   GUCC UGG  CUga gau g u
--------    u         GAA    A   -A    c   c u 

>aae-mir-277 (-41.90)   [aae-miR-277*:14-34] [aae-miR-277:62-83]

ua           -   GU    -            ua      u cc 
  guuuuggagug CGU  CAGA AGUGCAUUUACA  gguauu c  g
  ||||||||||| |||  |||| ||||||||||||  |||||| |  u
  uaagaccuuaC GCA  GUCU UCACGUAAAUgu  uuauga g  u
ac           A   UG    A            --      c au 

>aae-mir-9 (-24.70)   [aae-miR-9:6-27] [aae-miR-9*:56-77]

---c  a            CU    G     u  uga   uug 
    ug aUCUUUGGUAUU  AGCU UAGAa gu   gcu   u
    || ||||||||||||  |||| ||||| ||   |||   g
    ac UGGAGACCAUGA  UCGA AUcuu ua   ugg   a
guca  C            UU    A     c  ---   uau 

>aae-mir-8 (-23.50)   [aae-miR-8*:10-31] [aae-miR-8:49-71]

gucu    -----       -   G     C      --    u 
    guuc     aCAUCUU ACC GGCAG AUUAGA  uauu u
    ||||     ||||||| ||| ||||| ||||||  |||| u
    caag     UGUAGAA UGG CUGUC UAAUcu  auaa g
----    ccugC       A   A     A      uc    a 

>aae-mir-252 (-25.12)   [aae-miR-252:12-32] [aae-miR-252*:45-65]

ga       ac        A U  C     AGaga 
  auucuuu  UAAGUACU G GC GCAGG     u
  |||||||  |||||||| | || |||||     u
  ugagaaG  AUUCGUGA C CG CGUCc     u
--       CU        A C  U     ccaag 

>aae-bantam (-20.30)   [aae-bantam-5p:5-27] [aae-bantam-3p:47-68]

agaaC         UUUUC     G    au   au 
     CGGUUUUCA     GAUCU ACuu  uug  u
     |||||||||     ||||| ||||  |||   
     GUCGAAAGU     CUAGA Ugag  aac  u
uuuUA         -UUUA     G    --   aa 

>aae-mir-71 (-39.21)   [aae-miR-71:6-27] [aae-miR-71*:51-72]

--     A        U            aguuuca   uau 
  cggca GAAAGACA GGGUAGUGAGAU       ccc   u
  ||||| |||||||| ||||||||||||       |||   g
  gucGU CUUUCUGU UCCAUCACUCUa       ggg   c
ua     A        -            -------   uca 

>aae-mir-276-1 (-40.90)   [aae-miR-276*:17-37] [aae-miR-276:57-77]

-acu   gauu    uc    A     AG         ----g    g 
    ggu    gcca  AGCG GGUAU  AGUUCCUAC     uugc u
    |||    ||||  |||| |||||  |||||||||     ||||  
    ccg    cggu  UCGU CCAUA  UCAAGGAUg     agcg g
agug   --au    uC    G     CU         guuaa    u 

>aae-mir-317-1 (-37.34)   [aae-miR-317:55-75]

ga   a  uc      c       -   --     c     uugcau 
  gga uu  ggcuac gggauac acc  cugug ucgcu      u
  ||| ||  |||||| ||||||| |||  ||||| |||||       
  ccu aa  ccggug cUCUAUG UGG  GACAC AGUga      c
ag   -  uc      a       G   UC     A     ucaaag 

>aae-mir-2a (-43.50)   [aae-miR-2a*:15-35] [aae-miR-2a:59-81]

---u            cA    -     -         A     uuac  uu 
    gggaacuguuuc  CUCU CAAAG UGGUUGUGA Augag    uc  g
    ||||||||||||  |||| ||||| ||||||||| |||||    ||   
    ucuuuggcaaag  GAGA GUUUC ACCGACACU Uacuc    ag  a
acgc            -C    A     G         A     ---u  ca 

>aae-mir-998 (-46.40)   [aae-miR-998:59-77]

aa           c  a     c        gu      ----    u 
  gaaccaauacc ga cugaa ucucgugg  cugcag    uuga a
  ||||||||||| || ||||| ||||||||  ||||||    ||||  
  cuugguugugg cu GACUU AGAGUACC  GAUguu    agcu u
-g           c  C     -        AC      cgaa    u 

>aae-mir-92a (-33.90)   [aae-miR-92a*:12-33] [aae-miR-92a:52-72]

aa         C   AC       G    C   -  -ga a 
  ucuacgcau GGU  GGACAGG GCAA AUU gu   c u
  ||||||||| |||  ||||||| |||| ||| ||   |  
  aggugcguA CCG  CCUGUUC CGUU Uaa cg   g u
ug         U   GC       A    A   u  aaa u 

>aae-mir-306 (-54.70)   [aae-miR-306:20-41] [aae-miR-306*:94-115]

ca       uuu   c    C          -  A       augugcauuucucaagcaaucucg 
  uucgcaa   cac gguU AGGUACUGAG UG CUCUCAG                        u
  |||||||   ||| |||| |||||||||| || |||||||                         
  aagcguu   gug cCGA UCUAUGGCUC AC GAGAGuc                        c
aa       ---   a    A          C  -       ccaaaaaguuggaguccaggacuc 

>aae-mir-281 (-36.90)   [aae-miR-281:21-39] [aae-miR-281*:58-79]

u  -uu      a  aaa           -UA     C      ag ga 
 gg   ucgaau ug   auaAAGAGAGC   UCCGU GACagu  g  u
 ||   |||||| ||   |||||||||||   ||||| ||||||  |  a
 cu   agcuua ac   uAUUUCUCUCG   AGGUA CUGUca  u  u
a  uau      -  aug           UUA     -      cu ag 

>aae-mir-1889 (-42.70)   [aae-miR-1889*:5-26] [aae-miR-1889:105-126]

ga  U        A       A      ugauuuuccuggugaaucccggccuuguccuccgu 
  gg AAUCUCAA UUGUAAC GUGGgu                                   c
  || |||||||| ||||||| ||||||                                   a
  CC UUGGGGUU GACAUUG CACcca                                   c
cc  U        A       -      uaucgcuugugcaaaagcucugugaacagugugaa 

>aae-mir-980 (-31.80)   [aae-miR-980*:10-33] [aae-miR-980:50-68]

acu     uCG   G         U  U      c  gu 
   acaau   GCC UUCAUUGGG CA CUAGCu gu  u
   |||||   ||| ||||||||| || |||||| ||  g
   uguua   CGG AAGUGAUCC GU GAUuga ca  g
---     uaa   G         -  C      -  aa 

>aae-mir-278 (-41.70)   [aae-miR-278:9-31] [aae-miR-278*:51-72]

--u   -            U     U  G      -ug auu 
   ggu gcgaACGGACGA AGUCU CA CGGCCg   c   u
   ||| |||||||||||| ||||| || ||||||   |    
   cca ugUUUGCCUGCU UCAGG GU GCUggu   g   g
ccg   a            U     -  G      uaa aua 

>aae-mir-989 (-37.23)   [aae-miR-989:68-88]

-----uucaucauac     u      -cc        c    uu    u   uaccgau 
               gguca ggggga   gccgcuac ucgc  ucac ugg       u
               ||||| ||||||   |||||||| ||||  |||| |||       u
               ucggu ucccuu   UGGUGAUG AGUG  AGUG acc       c
uccuucacaacauua     -      cCA        C    -U    U   uaauacc 

>aae-mir-14 (-56.07)   [aae-miR-14:95-116]

------     --     accucaac       a    ugcucu  -   a  a   u       c    uu      u   ggucauuu 
      gugga  auuac        gaauuug acuc      ac ccg ua gcc gugggag gaga  aaggcu gcu        a
      |||||  |||||        ||||||| ||||      || ||| || ||| ||||||| ||||  |||||| |||        u
      caccu  ugaug        cuugagc ugag      ug ggc au ugg UAUCCUC CUCU  UUCUGA Uga        u
cuacua     ac     -ccacgcc       c    caacuu  u   a  a   u       U    UU      C   agcucaca 

>aae-mir-11 (-46.79)   [aae-miR-11*:27-48] [aae-miR-11:67-88]

----aaca     --      agug   c          C        CC    uacacuu 
        uugau  gcgagu    ccg gcgAGAACUC GGCUGUGA  UGUG       u
        |||||  ||||||    ||| |||||||||| ||||||||  ||||        
        aacua  ugcucg    ggu CGUUCUUGAG CUGACACU  ACac       a
agguaauc     gc      --ga   U          U        --    uaaaccu 

>aae-mir-190 (-36.30)   [aae-miR-190:15-38]

----------g      uc      -            AU      U  u   auu 
           ggugau  cggugA GAUAUGUUUGAU  UCUUGG UG uaa   u
           ||||||  |||||| ||||||||||||  |||||| || |||    
           cuacug  gucauu uuauacaaacua  aggacc ac auu   u
gcuucagagua      gu      a            --      c  u   aua 

>aae-mir-1 (-32.30)   [aae-miR-1:48-69]

-   aa            c        a   -  gauu 
 cga  guuccaugcuuc uugcauuc aua gu    c
 |||  |||||||||||| |||||||| ||| ||     
 gcu  cGAGGUAUGAAG AAUGUAAG Uau cg    u
g   cg            A        G   a  aaag 

>aae-mir-34 (-67.10)   [aae-miR-34:16-37] [aae-miR-34*:94-116]

caa    aua   ua      U    U   C        uagaacu  ggg           -    u 
   ggca   cgc  UGGCAG GUGG UAG UGGUUGug       uu   gggcuuccgug gcgu c
   ||||   |||  |||||| |||| ||| ||||||||       ||   ||||||||||| ||||  
   ccgu   gcg  GCCGUC CGCC AUC ACCAACac       ag   cucgggggcac cgcg g
gga    gga   CC      C    U   -        -----uu  --a           a    c 

>aae-mir-1890 (-33.70)   [aae-miR-1890:57-78]

aucg  a          g     ug    g   u    ua  gu 
    ac uacggcuaga cuaau  gaga uuc ugaa  gu  u
    || |||||||||| |||||  |||| ||| ||||  ||  g
    ug gugcuGGUCU GAUUA  UUCU AAG acuu  ca  u
---g  -          G     GU    A   U    -c  ag 

>aae-mir-957 (-39.90)   [aae-miR-957:52-73]

-u     g              g       -guau   g 
  ccggc uuaguuuugggcgg uuuuagu     uuc a
  ||||| |||||||||||||| |||||||     ||| u
  ggcCG AGUCAAAACCUGCC AAAGUua     gag u
gc     G              -       acuau   a 

>aae-mir-305 (-30.80)   [aae-miR-305:15-38] [aae-miR-305*:53-75]

aa     -     cu U         U  G     -CUG    u 
  uguca caugu  A UGUACUUCA CA GUGCU    Guug u
  ||||| |||||  | ||||||||| || |||||    ||||  
  acagu gugua  U ACAUGAGGU GU CACGG    uagc u
ug     c     AU C         U  A     Ccca    u 

>aae-mir-996 (-38.70)   [aae-miR-996:64-84]

aa        u   c    u     -        g     uuuuccagu 
  cucaauuu cgu ggcg gcaug aaucuggu cacgg         u
  |||||||| ||| |||| ||||| |||||||| |||||         g
  gaguugaa gua CUGC CGUAC UUAGAUCA GUgcu         u
ua        -   u    U     A        -     ucgcuauaa 

>aae-mir-87 (-36.02)   [aae-miR-87:66-87]

----acca      - a     ca        -      aa    ---g   guauu 
        gauugu c cuggc  gccugaaa uuugcu  accu    ugu     u
        |||||| | |||||  |||||||| ||||||  ||||    |||     g
        cuaaca g ggcUG  UGGACUUU AAACGA  UGga    aca     a
uacuaacg      a a     UG        U      -G    acua   aacuu 

>aae-mir-12 (-38.40)   [aae-miR-12:8-30] [aae-miR-12*:78-99]

uu    cU      U    C          ------     ---u      a  ac 
  cgga  GAGUAU ACAU AGGUACUGGU      gucga    auucga uc  c
  ||||  |||||| |||| ||||||||||      |||||    |||||| ||   
  gccU  CUCGUA UGUA UUCAUGACca      uaguu    ugggcu ag  a
--    CU      U    -          uucaau     uccu      a  ca 

>aae-mir-13 (-32.40)   [aae-miR-13*:13-34] [aae-miR-13:54-76]

guc u       -    A            C    uu   a g 
   g gaucgga UCGU AAAAUGGUUGUG UGUG  guu c c
   | ||||||| |||| |||||||||||| ||||  ||| |  
   c cuagcUU AGCA UUUUACCGACAC AUac  uaa g u
-gu -       G    G            U    -u   a c 

>aae-mir-999 (-34.10)   [aae-miR-999:46-67]

--------              g     ga   u      cau 
        gcagggacgcgguc ugcag  aau auuugg   u
        |||||||||||||| |||||  ||| ||||||    
        cguuUCUGUGUCAG AUGUC  UUG Uaaacu   a
cuaguggg              A     AA   -      uag 

>aae-mir-125 (-31.10)   [aae-miR-125:21-42] [aae-miR-125*:21-42]

uu       uuu        UC  U    C CU         --  aua 
  aguuuug   cugcugau  CC GAGA C  AACUUGUGA  cu   g
  |||||||   ||||||||  || |||| |  |||||||||  ||    
  uuagagc   ggcgauua  gg cucu g  uugaacacu  ga   u
ac       --u        -u  c    a uu         uu  agu 

>aae-mir-308 (-31.60)   [aae-miR-308:11-32] [aae-miR-308*:52-69]

agcgcug                    GC    u cau  g 
       uuuCGCGGUAUAUUCUUGUG  UUGa g   uu a
       ||||||||||||||||||||  |||| |   ||  
       agaguGUCAUAUGAGGACAC  Aacu c   aa a
-----ag                    UA    - --u  a 

>aae-mir-315 (-30.30)   [aae-miR-315:16-37] [aae-miR-315*:58-79]

-a      c   aaa                A      ----   gca 
  guguuu uau   aUUUUGAUUGUUGCUC GAAAGC    cgu   u
  |||||| |||   |||||||||||||||| ||||||    |||   u
  cacaaa aua   UGAAACUAAUGACGAG CUUUCg    gca   u
ac      -   aaC                -      cugg   aag 

>aae-mir-1891-1 (-33.10)   [aae-miR-1891:16-37]

-     uc        UGA         UU        uugua 
 cuuuu  cgucaugu   GGAGUUAAU  GCGUGUUU     u
 |||||  ||||||||   |||||||||  ||||||||      
 gaaaa  guaguaca   ucucaauua  ugcacaaa     u
c     ua        ugg         cc        uuagu 

>aae-mir-1891-2 (-33.20)   [aae-miR-1891:18-39]

--au     uc        UGA         UU        uugua 
    cuuuu  cgucaugu   GGAGUUAAU  GCGUGUUU     u
    |||||  ||||||||   |||||||||  ||||||||      
    gaaaa  guaguaca   ucucaauua  ugcacaaa     u
aacc     ua        ugg         cc        uuagu 

>aae-mir-1175 (-33.20)   [aae-miR-1175:13-34] [aae-miR-1175*:51-74]

ac        a     -    U     UC  A      agua 
  gauaugaa uAAGU GGAG AGUGG  UC UCGcuu    u
  |||||||| ||||| |||| |||||  || ||||||     
  cuauacuu AUUCA CCUC UCAUC  AG AGUgaa    u
au        A     G    U     UU  -      aaga 

>aae-mir-1174 (-34.90)   [aae-miR-1174:97-117]

acuccaauuc        --u      cu     uaguuacgu      a   ac     uucu    u 
          uggguauu   uagauc  uggca         gauuga ugc  uguuc    uugg u
          ||||||||   ||||||  |||||         |||||| |||  |||||    |||| u
          ACCCAUAA   AUCUAG  ACUgu         cuaacu gcg  acaag    gacc a
--------aU        UUC      --     ---------      -   -c     cuau    c 

>aae-mir-993 (-36.90)   [aae-miR-993:18-39]

ag   u   cc    cc    -      UUC          -     ucuuu 
  cgc ccu  guga  UACC CUGUAG   CGGGCUUUUg ugguu     u
  ||| |||  ||||  |||| ||||||   |||||||||| |||||      
  gug gga  cacu  augg gauauc   gcucgaagac auuaa     a
aa   -   --    cu    a      uuu          u     uuguu 

>aae-mir-981 (-35.64)   [aae-miR-981:58-79]

aaa      -c  gau         -    g        u caccau 
   ccuugc  ug   cggguuucg cggc aacgggcu c      g
   ||||||  ||   ||||||||| |||| |||||||| |       
   ggaacg  ac   GUCCAAAGC GCUG UUGCUUga g      a
-ac      uu  -AC         A    -        c auaagu 

>aae-mir-965 (-29.10)   [aae-miR-965:52-73]

gauu     gg      uc         g    uug   u 
    cugaa  gggaaa  cuguacgcu uaug   uau u
    |||||  ||||||  ||||||||| ||||   |||  
    ggcUU  CCCUUU  GAUAUGCGA AUac   aua g
-ugc     -A      UC         -    cua   a 

>aae-mir-932 (-35.40)   [aae-miR-932*:18-39] [aae-miR-932:56-77]

-gua     --     a      A       G   A       g  - u 
    aucau  agaau gcuUCA UUCCGUA UGC UUGCAGu ug c u
    |||||  ||||| |||||| ||||||| ||| ||||||| || |  
    uagua  ucuua cGAAGU AAGGUGU ACG AACGUca gc g u
cuac     ac     g      G       A   -       a  a a 

>aae-mir-927 (-26.00)   [aae-miR-927:50-71]

gg    c          cu       a   u     g 
  uuug uuuagaauuc  acgcuuu ccg gauuu u
  |||| ||||||||||  ||||||| ||| ||||| u
  aagC AAGUCUUGGG  UGCGAAA ggu uugaa g
ca    A          UU       C   -     a 

>aae-mir-309a-1 (-28.92)   [aae-miR-309a:65-85]

auccaccgaaug         u     c       uu    -----ucau  g 
            uuaugcgac aacuu guucagu  ggug         ac a
            ||||||||| ||||| |||||||  ||||         ||  
            aauaCGCUG UUGAA CGGGUCA  CUac         ug a
---------gua         U     A       --    uuugaccuu  g 

>aae-mir-309a-2 (-28.92)   [aae-miR-309a:64-84]

uccaccgaaug         u     c       uu    -----ucau  g 
           uuaugcgac aacuu guucagu  ggug         ac a
           ||||||||| ||||| |||||||  ||||         ||  
           aauaCGCUG UUGAA CGGGUCA  CUac         ug a
--------gua         U     A       --    uuugaccuu  g 

>aae-mir-285 (-30.10)   [aae-miR-285:57-78]

---------guu       -  --a       gc   c  a    ag    -  gcau 
            aaucuuc cu   aguacug  uuc aa ggug  uaga ug    u
            ||||||| ||   |||||||  ||| || ||||  |||| ||     
            uuagaag gg   uCAUGAC  AAG UU CCAC  AUcu ac    c
agugcgucuugu       c  aag       UA   C  A    -G    c  auag 

>aae-mir-137-1 (-34.70)   [aae-miR-137:63-84]

-uucauc     a    g ug  c   c       ug   uau     c  ug 
       gagca cuug u  gc acg guauucu  ggu   uaaca ac  u
       ||||| |||| |  || ||| |||||||  |||   ||||| ||  u
       uuugu gaac a  uG UGC CAUAAGA  UCG   AUugu ug  u
gcuacac     -    - gu  A   A       GU   -UU     -  ua 

>aae-mir-137-2 (-34.70)   [aae-miR-137:65-86]

uauucauc     a    g ug  c   c       ug   uau     c  ug 
        gagca cuug u  gc acg guauucu  ggu   uaaca ac  u
        ||||| |||| |  || ||| |||||||  |||   ||||| ||  u
        uuugu gaac a  uG UGC CAUAAGA  UCG   AUugu ug  u
----acac     -    - gu  A   A       GU   -UU     -  ua 

>aae-mir-133 (-40.71)   [aae-miR-133:81-102]

--cucg a       aa             cuuc  gu     --cg   -------       g 
      g aucgcug  uauagcugguuga    gg  caaau    uca       aauauuu c
      | |||||||  |||||||||||||    ||  |||||    |||       |||||||  
      c uagugac  aUGUCGACCAACU    CC  GUUua    agu       uuauaga a
acauua g       -g             -UCC  UG     cuaa   gacuccu       a 

>aae-mir-31 (-40.92)   [aae-miR-31:51-73]

cgag   u       u  -aagg    guuug   agug       -caacuU       U     C         agu 
    auu ugggaga ug     ucgu     cag    aaauugg       GGCAAGA GUUGG AUAGCUGAa   u
    ||| ||||||| ||     ||||     |||    |||||||       ||||||| ||||| |||||||||   u
    uag gccuuuu gc     agca     guu    uuuaacc       cuguucu caacu uaucgauuu   u
----   u       u  ggaga    --aca   ---a       uuuuuau       u     -         gag 

>aae-mir-10 (-36.99)   [aae-miR-10:15-36]

uu          cu   -  G    U           ugaauau 
  uguucuacau  ACC CU UAGA CCGAAUUUGUU       u
  ||||||||||  ||| || |||| |||||||||||        
  acggggugug  ugg ga aucu ggcuuaaacag       u
uu          uu   a  g    u           cgaacaa 

>aae-mir-iab-4-1 (-28.60)   [aae-miR-iab-4-5p:10-31] [aae-miR-iab-4-3p:44-67]

     a  -a            U    C   Ag  c 
gcuuc ug  ACGUAUACUGAA GUAU CUG  ug u
||||| ||  |||||||||||| |||| |||  || a
cggag aC  UGCAUAUGACUU CAUA GGC  au u
     g  AA            C    U   cu  c 

>aae-mir-283 (-40.85)   [aae-miR-283:16-39]

------g              CA       C   U         Cuuaccccac 
       uucgacugaaaggu  AUAUCAG UGG AAUUCUGGG          c
       ||||||||||||||  ||||||| ||| |||||||||           
       gagcugauuuuuca  uauaguc acc uuaaggccc          g
acuggua              cc       a   -         uucgcauauu 

>aae-mir-988 (-30.30)   [aae-miR-988*:10-30] [aae-miR-988:47-68]

            U C    UG    --U  -   -     
gcugcggguGUG G UUUG  ACAA   GA GAu ucgg 
|||||||||||| | ||||  ||||   || ||| ||| u
uggcguuCGCAC C AAAC  UGUU   Cu cua agcu 
            U C    GU    CCC  a   u     

>aae-mir-124 (-30.30)   [aae-miR-124:50-68]

uuuu   c      c      cg    a    ---u  ua 
    cuc ugguau cacugc  gccu uaug    cc  u
    ||| |||||| ||||||  |||| ||||    ||   
    gag acCGUA GUGGCG  CGGA AUac    gg  u
--gc   a      A      CA    -    ucau  cu 

>aae-mir-2940 (-38.63)   [aae-miR-2940:4-26] [aae-miR-2940*:87-108]

  u           A       AG     uuauuuuacc        uuucuuuuc    g 
ca UGGUUUAUCUU UCUGUCG  GCaag          ggauagug         guga c
|| ||||||||||| |||||||  |||||          ||||||||         ||||  
gU ACUAAAUAGAG GGACAGC  UGuuc          ccuaucac         cacu a
  C           -       --     ---uucucga        ---------    a 

>aae-mir-2765 (-38.30)   [aae-miR-2765:17-38]

-a      uc   a  c   U       - CA        gaua 
  aacguu  cgg gc UGG AACUCCA C  CCGUUGGC    u
  ||||||  ||| || ||| ||||||| |  ||||||||    u
  uugcaa  gcc ug gcc uugaggu g  gguaaccg    u
ac      --   g  c   c       c ag        acag 

>aae-mir-2941-1 (-34.27)   [aae-miR-2941:65-86]

aug     a     acc  u       -ug     a         ugauuuuu 
   gauua guugu   ac uucgugg   uuuag cguauuaca        u
   ||||| |||||   || |||||||   ||||| |||||||||         
   cugau uaacg   ug aGGCACC   AGAUC GCAUGAUgu        g
cua     a     -gu  u       UCA     G         caauacaa 

>aae-mir-2941-2 (-32.30)   [aae-miR-2941:59-80]

caa     gc           a  c  -     c      c aua  g 
   gaaug  gauuguucgug ag uc agcug auuaca g   ug a
   |||||  ||||||||||| || || ||||| |||||| |   || a
   uuuac  uuaacaGGCAC UC AG UCGGC UGAUgu u   gc u
aug     -a           C  A  A     A      u --g  a 

>aae-mir-33 (-35.90)   [aae-miR-33:9-29]

     c  -G          UU C        uuu c   c 
ccacc gg  UGCAUUGUAG  G AUUGCAcu   g guu g
||||| ||  ||||||||||  | ||||||||   | |||  
ggugg cc  acguaacguc  c uaacgugg   c caa a
     a  ga          uu a        --- a   u 

>aae-mir-279 (-33.40)   [aae-miR-279:61-82]

acaucc    gg    cg         a      uguu     u auuu 
      caac  uugu  augggugug aucuag    ucaca g    u
      ||||  ||||  ||||||||| ||||||    ||||| |    c
      guug  aacA  UACUCACAC UAGAUC    AGUgu c    g
--ggcc    aa    AU         C      ----     c gaua 

>aae-mir-263a (-33.10)   [aae-miR-263a:14-36] [aae-miR-263a*:54-75]

----------u   -     ac uA   G     GA    UU      u  auu 
           ccu aguac  g  AUG CACUG  AGAA  CACGGg au   u
           ||| |||||  |  ||| |||||  ||||  |||||| ||    
           gga ucaug  C  UAC GUGAC  UCUU  GUGCcc ua   u
gacuacuuagu   a     gu CC   G     GG    --      c  aag 

>aae-mir-7 (-29.70)   [aae-miR-7:16-38]

uc    u        U        A U     --       -   c 
  gcaa auuuugua GGAAGACU G GAUUU  UGUUGUu uug u
  |||| |||||||| |||||||| | |||||  ||||||| |||  
  cguu ugaaacau cuuucuga c cuaaa  acaauaa agc u
gu    -        -        a u     ua       u   a 

>aae-mir-100 (-45.10)   [aae-miR-100:31-52]

   uag      ------      cc    u      A      G     AA      - -  ccg 
gcg   ugguug      uaguua  cauu gcaggA CCCGUA AUCCG  CUUGUG c ug   u
|||   ||||||      ||||||  |||| |||||| |||||| |||||  |||||| | ||    
ugu   gcuagc      aucggu  guag cgucuu ggguau uaggc  gaacau g ac   u
   uua      uacgaa      au    c      a      g     aa      u u  acu 

>aae-mir-970 (-37.90)   [aae-miR-970:65-85]

aac   -a   cg       u        u    u       gc       gaau 
   ggu  uug  gcuuuca agguagcu gcgu ugucuua  ugguauu    g
   |||  |||  ||||||| |||||||| |||| |||||||  |||||||     
   cua  aac  ugagagu uuUAUCGG CGCA ACAGAAU  ACUaugg    u
guu   cg   ua       u        -    C       --       auag 

>aae-mir-210 (-22.60)   [aae-miR-210:44-62]

cucauugc     c  ac   -         -   g 
        agcug ug  cac ugcacaaga uua a
        ||||| ||  ||| ||||||||| ||| u
        ucGGC AC  GUG GCGUGUUCu agu u
----guua     A  -A   U         c   a 

>aae-mir-79 (-37.94)   [aae-miR-79:16-38] [aae-miR-79*:56-77]

----gaa    --ucg            CGC       G     uagaau 
       ccca     uccauGCUUUGG   UUUAGCU UAUGA      u
       ||||     ||||||||||||   ||||||| |||||       
       gggu     aggUACGAAACC   AGAUCGA AUacu      u
cuguggc    ucgga            AUU       A     uuauaa 

>aae-mir-307 (-37.80)   [aae-miR-307:59-80]

cuaguuuc   g      a  a         ccu  g       c  a 
        ccg cagucg uc cucacucaa   gg ugugaug uu u
        ||| |||||| || |||||||||   || ||||||| || u
        ggu guuagc AG GAGUGAGUU   CC ACACuac aa u
--------   a      c  C         CCU  A       u  g 

>aae-mir-1000-1 (-32.60)   [aae-miR-1000:23-43]

-c   uuuu       ac    uAUAU       UC         cuguu 
  gau    gcuagaa  cgau     UGUCCUG  ACAGCAGUa     a
  |||    |||||||  ||||     |||||||  |||||||||      
  cug    cgaucuu  guua     acagggc  uguugucau     c
ca   ---c       -a    cauuu       uu         uuaaa 

>aae-mir-1000-2 (-32.60)   [aae-miR-1000:23-43]

-c   uuuu       ac    uAUAU       UC         cuguu 
  gau    gcuagaa  cgau     UGUCCUG  ACAGCAGUa     a
  |||    |||||||  ||||     |||||||  |||||||||      
  cug    cgaucuu  guua     acagggc  uguugucau     c
ca   ---c       -a    cauuu       uu         uuaaa 

>aae-mir-375 (-43.60)   [aae-miR-375:78-99]

---u           aguu   ua    c    u   ga    ugaa    -aau    uuc 
    ggaagaauccg    acu  agcc aacg aca  aacu    ucug    gccg   u
    |||||||||||    |||  |||| |||| |||  ||||    ||||    ||||    
    ucuucuuaggc    UGA  UCGG UUGC UGU  UUga    agau    cggu   a
cuag           guAU   GC    U    U   --    ----    cguu    uag 

>aae-let-7 (-28.56)   [aae-let-7:6-26]

    u    G    U             ugacug 
cacg UGAG UAGU GGUUGUAUAGUag      a
|||| |||| |||| |||||||||||||      u
gugc guuc aucg cuaacguaucguc      u
    u    g    u             uauaaa 

>aae-mir-2942 (-23.19)   [aae-miR-2942:53-75]

    -uu  c      c  u        ac     uacauug 
aaug   au aauucg ug ggucucga  guacc       g
||||   || |||||| || ||||||||  |||||        
uuac   UA UUGAGC AC UCAGAGCU  UAUgg       a
    ccu  A      -  U        --     uuuuuau 

>aae-mir-2943-1 (-25.82)   [aae-miR-2943:12-34]

    a ug    UAA     CACUU    G    guuuc 
ccca u  augU   GUAGG     GCAG CAAA     a
|||| |  ||||   |||||     |||| ||||     u
gggu a  uaca   caucc     cguc guuu     u
    g gu    uuc     uuuuu    a    aacac 

>aae-mir-2943-2 (-19.90)   [aae-miR-2943:5-27]

     U       CACUU    G   Au ug  gc 
gaugU AAGUAGG     GCAG CAA  u  ua  u
||||| |||||||     |||| |||  |  ||  u
uuaca uucaucc     cguc guu  a  au  u
     u       uuuuu    a   -- gu  aa 

>aae-mir-2944a (-21.50)   [aae-miR-2944a:5-28] [aae-miR-2944a*:39-60]

        GA  UU          C  Agu 
cguuGAAG  AC  CUGCUGUGAU UG   u
||||||||  ||  |||||||||| ||   a
guAAUUUC  UG  GAUGACACUA ac   g
        -A  UU          U  aua 

>aae-mir-2944b (-17.50)   [aae-miR-2944b:4-26] [aae-miR-2944b*:38-59]

aucGA   -    C C G         uga 
     AGG AACU C G UGUGAUAUA   c
     ||| |||| | | |||||||||   u
     UCC UUGA G C ACACUAUau   c
uauAG   A    U A G         uag 

>aae-mir-193 (-40.60)   [aae-miR-193:72-93]

        --   ---aauu       u   ac        u    a    a  auuucc  c 
gcuugcua  ugu       uuuucaa cga  ugggauuu gugg ccag ag      uc a
||||||||  |||       ||||||| |||  |||||||| |||| |||| ||      || u
cgaacgau  aca       aaagguu guu  ACCCUGAA CAUC GGUC Uc      ag u
        ag   gccuguu       u   CA        U    C    A  gauaau  c 

>aae-mir-2b (-45.60)   [aae-miR-2b:52-75]

  -     u     a   -      -         a   -  uuu 
gg gcgua ucuag cuc ucaaag uggcuguga aug gu   a
|| ||||| ||||| ||| |||||| ||||||||| ||| ||    
cc cgcgu aggUC GAG AGUUUC ACCGACACU Uac cg   u
  a     c     -   U      G         A   u  uuu 

>aae-mir-219 (-31.60)   [aae-miR-219:11-33]

u   u    c  AU      AA           --uu    uc 
 uuc agcu UG  UGUCCA  CGCAAUUCUUG    uuau  g
 ||| |||| ||  ||||||  |||||||||||    ||||   
 aag ucgg gc  acaggu  guguugagaac    agua  a
a   c    u  cu      ca           cuau    ua 

>aae-mir-2c (-28.61)   [aae-miR-2c:50-72]

u      -g       u        uu   uacgaccu 
 gcguug  caucaaa uugguugu  uag        c
 ||||||  ||||||| ||||||||  |||        u
 cgcaaC  GUAGUUU GACCGACA  AUc        u
a      GA       C        CU   cccaaagu 

>aae-mir-263b (-32.30)   [aae-miR-263b:15-37] [aae-miR-263b*:59-79]

    -    ac    CU      UG     A        -----c  u 
gacc aauu  gaac  UGGCAC  GGAGA UUCACAGg      gc a
|||| ||||  ||||  ||||||  ||||| ||||||||      || u
cugg uuaa  uuUG  ACCGUG  UUUCU AGGUgucu      cg u
    c    -a    CU      CU     -        uacuau  u 

>aae-mir-276-2 (-60.91)   [aae-miR-276:106-126]

---ggugaagugugcaguaauuagugccagguagguuagauuuccaguguc      u      uc    a     ag          cguuc       
                                                   ucgagu aauccg  agcg gguau  aguuccuaug     ggauaa 
                                                   |||||| ||||||  |||| |||||  ||||||||||     ||||| a
                                                   gguucg uuaggu  UCGU CCAUA  UCAAGGAUac     cuuaua 
cuacuaaauguuuaaucggugcuugaaggugguaaugggagagcuacugaa      -      uC    G     CU          -----       

>aae-mir-282-1 (-45.20)   [aae-miR-282:29-55] [aae-miR-282*:85-106]

aucguc     -ca    -c  ---a     guA           CC      U      uuac  uccu   g 
      aucgu   ucgu  gc    caggu   AUCUAGCCUCU  UAGGCU UGUCUG    cu    ugg a
      |||||   ||||  ||    |||||   |||||||||||  |||||| ||||||    ||    ||| a
      uggca   ggca  ug    gucua   uGGAUUGGAGA  GUCCGA ACAgac    ga    acc u
------     acc    ac  aaaa     aag           CA      U      ---c  --uc   u 

>aae-mir-282-2 (-45.20)   [aae-miR-282:29-55] [aae-miR-282*:85-106]

aucguc     -ca    -c  ---a     guA           CC      U      uuac  uccu   g 
      aucgu   ucgu  gc    caggu   AUCUAGCCUCU  UAGGCU UGUCUG    cu    ugg a
      |||||   ||||  ||    |||||   |||||||||||  |||||| ||||||    ||    ||| a
      uggca   ggca  ug    gucua   uGGAUUGGAGA  GUCCGA ACAgac    ga    acc u
------     acc    ac  aaaa     aag           CA      U      ---c  --uc   u 

>aae-mir-286b-1 (-40.86)   [aae-miR-286b:66-90]

   u      --    u   -   cu         uaucauuuc        
aag ccuggg  gcga ugu cgg  uagucgcug         aacugcu 
||| ||||||  |||| ||| |||  |||||||||         |||||| g
uuc ggaCCC  UGCU ACA GCC  AUCAGUgau         uugacgu 
   c      UA    C   A   AG         ---cgcuuc        

>aae-mir-286b-2 (-40.86)   [aae-miR-286b:66-90]

   u      --    u   -   cu         uaucauuuc        
aag ccuggg  gcga ugu cgg  uagucgcug         aacugcu 
||| ||||||  |||| ||| |||  |||||||||         |||||| g
uuc ggaCCC  UGCU ACA GCC  AUCAGUgau         uugacgu 
   c      UA    C   A   AG         ---cgcuuc        

>aae-mir-286a (-36.10)   [aae-miR-286a:63-87]

     ua         --au   -   a          cguacaaaacg 
aucgu  uuuggggcg    ugu cgg cuagucgcug           g
|||||  |||||||||    ||| ||| ||||||||||            
uagca  aaaUCCUGC    ACA GCC GAUCAGUgau           a
     cg         GCUC   A   A          caacuuuauca 

>aae-mir-2945 (-35.30)   [aae-miR-2945*:10-33] [aae-miR-2945:52-73]

-   -              C       GU      ugc   au 
 ucu gaucugAGCGGGUC GUUUCUA  GUCAUG   ugu  u
 ||| |||||||||||||| |||||||  ||||||   |||   
 ggg cuggAUUUGCUCAG CGGAGAU  CAGUac   aua  c
a   u              A       --      --u   ag 

>aae-mir-316 (-23.30)   [aae-miR-316:19-40]

ccaacauu        uu          ----C   UACUGCCGguggc 
        uugauuga  UGUCUUUUUC     GCU             a
        ||||||||  ||||||||||     |||             u
        aacuaacu  gcggaaaaag     cga             u
------uu        cc          ccaaa   cagcucuuaaagu 

>aae-mir-317-2 (-35.44)   [aae-miR-317:53-73]

   a  uc      c       -   --     c     uugcau 
gga uu  ggcuac gggauac acc  cugug ucgcu      u
||| ||  |||||| ||||||| |||  ||||| |||||       
ccu aa  ccggug cUCUAUG UGG  GACAC AGUga      c
   -  uc      a       G   UC     A     ucaaag 

>aae-mir-309b (-28.40)   [aae-miR-309b*:6-28] [aae-miR-309b:47-68]

u      U      CC       --   --     u 
 uaugCG CAAACU  GUUCAGU  UGG  UGgag c
 |||||| ||||||  |||||||  |||  ||||| a
 auACGC GUUUGA  CGGGUCA  acu  accuu u
a      U      UA       CU   ga     u 

>aae-mir-92b (-33.20)   [aae-miR-92b*:12-34] [aae-miR-92b:52-73]

    -cgaa         U   UU    CC     -  gaau 
gcuc     uguAGGUCG GAC  GUGC  GUUUG cu    u
||||     ||||||||| |||  ||||  ||||| ||     
cgag     aCGUCCGGC CUG  CACG  UAAac gg    u
    aaccg         C   UU    -U     u  uaau 

>aae-mir-9a-1 (-26.90)   [aae-miR-9a:11-33]

     -a   cU       UAU      G     -  gaa 
gucaa  guu  CUUUGGU   CUAGCU UAUGA gu   u
|||||  |||  |||||||   |||||| ||||| ||   u
caguu  uaa  gaagcca   gaucga auacu ca   u
     ga   uu       uac      a     a  aga 

>aae-mir-9a-2 (-26.90)   [aae-miR-9a:11-33]

     -a   cU       UAU      G     -  gaa 
gucaa  guu  CUUUGGU   CUAGCU UAUGA gu   u
|||||  |||  |||||||   |||||| ||||| ||   u
caguu  uaa  gaagcca   gaucga auacu ca   u
     ga   uu       uac      a     a  aga 

>aae-mir-9b (-36.90)   [aae-miR-9b:15-38]

    -         aUC         UUU          ----u  ua 
ucac guuuauugg   UUUGGUGAU   AGCUGUAUGC     ga  c
|||| |||||||||   |||||||||   ||||||||||     ||   
agug uaaguaauc   aaaccacua   ucgauauacg     cu  g
    g         caa         -uu          uuagu  uu 

>aae-mir-iab-4-2 (-28.60)   [aae-miR-iab-4-5p:10-31] [aae-miR-iab-4-3p:44-67]

     a  -a            U    C   Ag  c 
gcuuc ug  ACGUAUACUGAA GUAU CUG  ug u
||||| ||  |||||||||||| |||| |||  || a
cggag aC  UGCAUAUGACUU CAUA GGC  au u
     g  AA            C    U   cu  c 

>aae-mir-2946 (-36.86)   [aae-miR-2946:55-76]

       aa     g          a   c       uuucau 
uaugaac  ugauc ccauauuuuu ccg uacugca      u
|||||||  ||||| |||||||||| ||| |||||||      g
auacuug  guuAG GGUAUAGAAA GGC AUGAUgu      u
       gg     G          A   -       uaauaa 

>bmo-mir-1000 (-53.80)   [bmo-miR-1000:15-35]

    -          AUA      U U A        -  u 
ggcg cgucgcggcc   UUGUCC G C CAGCAGUa cu g
|||| ||||||||||   |||||| | | |||||||| ||  
ccgc gcggcgccgg   aacagg c g gucgucau ga g
    c          ccg      u u c        c  a 

>bmo-mir-iab-4as (-39.40)   [bmo-miR-iab-4as:14-36]

     au       U            G    A  G  -caa a 
guguc  cuucugU ACGUAUACUGAA GUAU CC ga    g a
|||||  ||||||| |||||||||||| |||| || ||    | u
cgcag  gaagaca ugcauaugacuu caua gg cu    c c
     cg       -            a    -  a  cacg g 

>gra-MIR398 (-56.30)   [gra-miR398:66-86]

-----------------  c      -guu               cc    a          uc  cccu 
                 gc aagaug    uaccccagaggggug  accu agaacacagg  au    u
                 || ||||||    |||||||||||||||  |||| ||||||||||  ||    a
                 cg uucuau    augggguUUCCCCAC  UGGA UCUUGUGUuc  ua    a
cguuuguuuucccuuac  c      auac               --    C          ga  aacc 

>gra-MIR482 (-68.79)   [gra-miR482:93-114]

     -       -      acc  uu         uuc       -                  ga   uucucug 
gaagg aggaaaa ggagag   gu  cuggaaauu   ggaaugg aggaguuggaaagauuuu  auu       u
||||| ||||||| ||||||   ||  |||||||||   ||||||| ||||||||||||||||||  |||        
uuucc uucuuuu ccucuc   ca  gaccuuuag   CCUUACC UCCUUAACCUUUCUaaaa  uaa       a
     a       a      cuu  -c         uca       C                  ag   uaauuuu 

>gar-MIR2947 (-59.42)   [gar-miR2947:81-102]

    u  ua  c  a     -                  a        uu   ugauu 
agcu gu  ag ga guuac guuaugggcaugguaugg uugcuguu  uga     u
|||| ||  || || ||||| |||||||||||||||||| ||||||||  |||     g
ucga cg  uc cu cGAUG CAGUACCCGUGCCAUAUu aacgacaa  acu     u
    -  gc  a  a     U                  a        uu   uucgu 

>ghr-MIR164 (-53.40)   [ghr-miR164:19-39]

        uau   u  u        CA            -    -  au 
ggggugag   cuc ug UGGAGAAG  GGGCACGUGCAa guuc cu  g
||||||||   ||| || ||||||||  |||||||||||| |||| ||  u
ucuuacuc   gag gc accucuuc  cucgugcacguu caag ga  u
        uuu   u  c        cc            u    u  au 

>ghr-MIR167 (-49.20)   [ghr-miR167:10-30]

     aa     A    - -            u  ucc        -gau  g 
gggaa  agUGA GCUG C CAGCAUGAUCUA cu   guuaguaa    gc g
|||||  ||||| |||| | |||||||||||| ||   ||||||||    ||  
uccuu  ucacu cgac g gucguacuggau ga   caaucguu    cg a
     cc     c    a c            c  ucc        auau  u 

>ghr-MIR172 (-57.41)   [ghr-miR172:90-110]

       gu    ug   g          a     a     ---uu     ucuuuuu          
agucacu  uugc  uug agcaucauca gauuc caauu     agggu       ugauugauu 
|||||||  ||||  ||| |||||||||| ||||| |||||     |||||       |||||||| u
ucgguga  aacg  GAC UCGUAGUAGU CUAAG guuag     uuccg       acuaacuag 
       au    gu   G          C     A     uauuu     -------          

>ghr-MIR393 (-57.00)   [ghr-miR393:11-32]

         c   A            U         -uuga   ugggcuuccuugaaaaccuuaacga 
gguggagag UCC AAGGGAUCGCAU GAUCUaaug     uga                         a
||||||||| ||| |||||||||||| |||||||||     |||                         u
cuaccuuuu agg uucccuagcgua cuagguuac     acu                         u
         a   c            -         ccaug   ugacuuaguuguuuuuaguuauuaa 

>ghr-MIR394b (-63.92)   [ghr-miR394b:35-54]

     g          cuuug        c a         U   U  A       ugaug      uucuuaccuacccaacu 
uaggg uucuuagagg     uugcagag c auUUGGCAU CUG CC CCUCCau     uacuuc                 u
||||| ||||||||||     |||||||| | ||||||||| ||| || |||||||     ||||||                  
auccc aagagucucu     aaugucuc g uaaacugua gac gg ggaggua     augaag                 a
     a          cuuua        a a         u   c  c       -----      uuucuguuuaguaaaau 

>ghr-MIR394a (-74.40)   [ghr-miR394a:43-62]

u  uu   ug       a        cuu  u       u  -      U C           --------   ucau       gu 
 gc  uca  gggguuu gcaaaggg   cu acagagu ua UUGGCA U UGUCCACCUCC        cca    ggaaaaa  c
 ||  |||  ||||||| ||||||||   || ||||||| || |||||| | |||||||||||        |||    |||||||  c
 cg  agu  uccuaaa uguuucuc   gg ugucucg gu aaccgu a acggguggagg        ggu    ccuuuuu  g
a  -u   gu       a        uuc  u       u  c      c u           uacuuuuu   cucc       au 

>ghr-MIR398 (-55.50)   [ghr-miR398:66-86]

  c      -guu               cc    a          uc  cccu 
gc aagaug    uaccccagaggggug  accu agaacacagg  au    u
|| ||||||    |||||||||||||||  |||| ||||||||||  ||    a
cg uucuau    augggguUUCCCCAC  UGGA UCUUGUGUuc  ua    a
  c      auac               --    C          ga  aacc 

>ghr-MIR479 (-42.60)   [ghr-miR479:17-38]

g        g   c  C                  AU   auu  gau 
 gaggagua aca ga GUGAUAUUGGUUCGGCUC  Cuu   gu   u
 |||||||| ||| || ||||||||||||||||||  |||   ||    
 uuuuucgu ugu cu cacuauaacuaagccgag  gaa   ua   a
u        a   a  -                  cg   cuu  aaa 

>ghr-MIR482a (-61.90)   [ghr-miR482a:107-128]

    -uu    ag    ag     aa   uu  c      uua   aa      u    -            a   u uc     ag 
auug   aaag  ggaa  ggaga  gag  gc gggagu   ugg  guggga gggu ggaaagauuugu uuu c  ucuug  u
||||   ||||  ||||  |||||  |||  || ||||||   |||  |||||| |||| |||||||||||| ||| |  |||||   
uagc   uuuc  ucuu  ccucu  uuc  ug ccuuua   aCC  UACCCU CUCA CCUUUCUaaacg aaa g  agaau  u
    ucu    au    ca     cc   -u  a      uuc   -A      C    U            -   u ua     cu 

>ghr-MIR482b (-83.20)   [ghr-miR482b:118-139]

      -gau    a     cuua    u    a     c    g       -  gg         a     uguuu        -----------  g 
agagac    ggag aggag    ggau cuag aagcu gugg augggug ag  gguaagaca uggac     cagucuuu           ug a
||||||    |||| |||||    |||| |||| ||||| |||| ||||||| ||  ||||||||| |||||     ||||||||           ||  
ucucug    ccuc uccuc    cuug gguc uuugg caCC UACCCAC UC  CCGUUCUgu auuug     gucggaag           ac a
      aaau    c     ----    u    c     u    G       C  AU         -     -----        aagaaauaaag  a 

>ghr-MIR827a (-48.10)   [ghr-miR827a:118-138]

     u  --u    ug        u              --       - aucucgccaauucuuuguucaagcaguu 
augca ug   ugaa  uguuuguu auggucaucuaagc  cauuuuu c                            u
||||| ||   ||||  |||||||| ||||||||||||||  ||||||| |                             
uacgu au   acuu  ACAAACAA UACCAGUAGAUUug  guaaaga g                            u
     u  ucu    ca        C              ua       c cccacaucagauagccaagcuaauaggu 

>ghr-MIR827b (-53.20)   [ghr-miR827b:136-156]

   -uu    -uu   gaaa     u  --u    ug        u              --       - aucucgccaauucuuuguucaagcaguu 
cuu   ucuu   cau    augca ua   ugaa  uguuuguu auggucaucuaagc  cauuuuu c                            u
|||   ||||   |||    ||||| ||   ||||  |||||||| ||||||||||||||  ||||||| |                             
gaa   agaa   gug    uacgu au   acuu  ACAAACAA UACCAGUAGAUUug  guaaaga g                            u
   uuu    cuu   -aac     u  ucu    ca        C              ua       c cccacauaagauagccaagcuaauaggu 

>ghr-MIR827c (-46.40)   [ghr-miR827c:118-138]

     --uu uu   ug        u              --       - aucucgccaauucuuuguucaagcaguu 
augca    g  gaa  uguuuguu auggucaucuaagc  cauuuuu c                            u
|||||    |  |||  |||||||| ||||||||||||||  ||||||| |                             
uacgu    c  cuu  ACAAACAA UACCAGUAGAUUug  guaaaga g                            u
     uauu uc   ca        C              ua       c cccacaucagauagccaagcuaauaggu 

>ghr-MIR2948 (-69.20)   [ghr-miR2948-5p:39-60]

-guaa   aa      --a    gg  -        ug a          -A     GC       auga      uu 
     gag  agggag   gagu  ug uugggagu  g ggUGUGGGAG  GUUGG  AAGAAUu    ccuuug  c
     |||  ||||||   ||||  || ||||||||  | ||||||||||  |||||  |||||||    ||||||  a
     uuc  ucccuu   cucg  gc aaccuuua  u ccauacccuc  caacc  uucuuaa    ggaaac  a
cuagg   cg      ccc    uu  c        gu c          cc     -a       -cgg      cu 

>ghr-MIR2949a (-46.50)   [ghr-miR2949a:19-40] [ghr-miR2949a*:79-99]

           c  c           A          C A    aacugcguuguug 
gucuuaguuug gu uugACUUUUGA CUGGAUUUGC G cuug             a
||||||||||| || ||||||||||| |||||||||| | ||||              
uagagucgggc ca aAUUGAAAACU GACCUAAACG c gagc             u
           -  a           -          U c    ccaaaaccuuugg 

>ghr-MIR2949b (-58.76)   [ghr-miR2949b:55-76]

         g        uuua   cu  -ucuuacu           c  c   U       A          C A    aacugcguuguug 
caugaugcu cucaguau    aua  gg        gucuuaguuug gu uug CUUUUGA CUGGAUUUGC G cuug             a
||||||||| ||||||||    |||  ||        ||||||||||| || ||| ||||||| |||||||||| | ||||              
guauuaugg ggguuaua    uau  uc        uagagucgggc ca aau gaaaacu gaccuaaacg c gagc             a
         a        ----   ag  uaagcauu           -  -   u       -          u c    ccaaaacauuugg 

>ghr-MIR2949c (-58.76)   [ghr-miR2949c:55-76]

         g        uuua   cu  -ucuuacu           c  c   U       A          C A    aacugcguuguug 
caugaugcu cucaguau    aua  gg        gucuuaguuug gu uug CUUUUGA CUGGAUUUGC G cuug             a
||||||||| ||||||||    |||  ||        ||||||||||| || ||| ||||||| |||||||||| | ||||              
guauuaugg ggguuaua    uau  uc        uagagucgggc ca aau gaaaacu gaccuaaacg c gagc             a
         a        ----   ag  uaagcauu           -  -   u       -          u c    ccaaaacauuugg 

>ghr-MIR2950 (-49.30)   [ghr-miR2950:72-92]

     -   u   uua                   ug a  --------       u 
caugg guu aug   uauuccaucucuugcacac  g cu        agccagc u
||||| ||| |||   |||||||||||||||||||  | ||        ||||||| u
guacu uag uac   AUAAGGUGGGGGACGUGUG  u ga        ucgguug u
     a   u   uac                   GU g  cuucgacu       u 

>ghr-MIR399c (-31.70)   [ghr-miR399c:54-74]

      -u    g a         ----- g     aac 
agggcu  cucu c uuggcaggu     a augau   u
||||||  |||| | |||||||||     | |||||    
UUCCGG  GAGA G AACCGUcca     u uacua   c
      UU    G A         auuga g     cac 

>ghr-MIR399d (-47.30)   [ghr-miR399d:67-87]

u   -    ua        c       aa      a     -    uuu 
 gag gaau  cagggcaa ucuccuu  gcaaaa uggau gugc   u
 ||| ||||  |||||||| |||||||  |||||| ||||| ||||    
 cuc cuua  GUCCCGUU AGAGGAA  CGUuuu gcuua uacg   c
a   a    cc        U       AC      a     a    uuu 

>hsv2-mir-H7 (-37.10)   [hsv2-miR-H7-5p:7-27] [hsv2-miR-H7-3p:40-60]

       -A       C UAA       -  g 
ggggagA  AGGGGUC G   CCAAAGG ug u
|||||||  ||||||| |   ||||||| || c
ccccuCU  UCCCCAG C   GGUUUcc gc u
       GC       C UUA       u  g 

>hsv2-mir-H9 (-36.50)   [hsv2-miR-H9-5p:1-20] [hsv2-miR-H9-3p:39-60]

        U    -   C    aa    g  g 
CUCGGAGG GGAG UCG GGUg  gguc uc u
|||||||| |||| ||| ||||  |||| ||  
gagcCUCC CCUC GGC CCAC  UUag ag c
        U    U   U    CC    -  a 

>hsv2-miR-H10 (-27.30)   [hsv2-miR-H10:43-60]

u       -     aa a   ------ ug    u 
 uuccccc ccuac  c gug      u  uccg u
 ||||||| |||||  | |||      |  |||| g
 aagggGG GGGUG  G CGU      g  gggu g
g       C     GG G   GGGguu gu    u 

>cqu-mir-1174 (-21.30)   [cqu-miR-1174:3-24]

-          UUU   UC    --    aguu 
 uuCUGGGUAU   AGA  AUCG  GCau    u
 ||||||||||   |||  ||||  ||||     
 gagacccaug   ucu  uagc  cgua    a
g          ccu   -u    ag    agag 

>cqu-mir-125 (-31.10)   [cqu-miR-125:21-42] [cqu-miR-125*:57-79]

uu       uuu        UC  U    C CU         --  aua 
  aguuuug   cugcugau  CC GAGA C  AACUUGUGA  cu   g
  |||||||   ||||||||  || |||| |  |||||||||  ||    
  uuagagc   ggcgauUA  GG CUCU G  UUGAACACU  ga   u
ac       --u        -U  C    A UU         uu  agu 

>cqu-mir-iab-4 (-39.80)   [cqu-miR-iab-4:17-38]

gc          a  -a            U    C   Ag  c 
  guacugcuuc ug  ACGUAUACUGAA GUAU CUG  ug u
  |||||||||| ||  |||||||||||| |||| |||  || a
  cauggcggag ac  ugcauaugacuu caua ggc  au u
ua          g  aa            c    u   cu  c 

>cqu-mir-281 (-40.00)   [cqu-miR-281:26-47] [cqu-miR-281*:63-83]

uu   --c   u      -   aaa           -UA     C      ag ga 
  cug   agu ucgaau gug   auaAAGAGAGC   UCCGU GACAGU  g  u
  |||   ||| |||||| |||   |||||||||||   ||||| ||||||  |  a
  gac   uua agcuua cau   uaUUUCUCUCG   AGGUA CUGUca  u  u
-u   aac   u      a   --g           UUA     -      cu ag 

>cqu-mir-124 (-35.00)   [cqu-miR-124:50-68]

  uu   c             cg    g    ---u   a 
uu  cuc ugguguucacugc  gccu uaug    ccu u
||  ||| |||||||||||||  |||| ||||    |||  
ag  gag acCGUAAGUGGCG  CGGA AUac    gga u
  gc   a             CA    -    uuuu   g 

>cqu-mir-1 (-32.80)   [cqu-miR-1:49-70]

g   aa            c        a   -  gauc 
 cga  guuccaugcuuc uugcauuc aua gu    u
 |||  |||||||||||| |||||||| ||| ||     
 gcu  cGAGGUAUGAAG AAUGUAAG Uau ca    u
g   cg            A        G   g  aagu 

>cqu-mir-988 (-40.30)   [cqu-miR-988*:14-35] [cqu-miR-988:54-74]

ga               U C    UG    --C  -    - ag 
  cccgcugcgggUGUG G UUUG  ACAA   GA GAuu c  c
  ||||||||||||||| | ||||  ||||   || |||| |   
  ggguggcguuCGCAC C AAAC  UGUU   cu cuaa g  u
gg               U C    GU    CCC  a    a uu 

>cqu-mir-275 (-54.40)   [cqu-miR-275:62-81]

cc   aauc        a          -ag    a   gg    --    c 
  cgg    cuuccgau gcgcgcgcua   cagg acc  gacu  uggu a
  |||    |||||||| ||||||||||   |||| |||  ||||  |||| u
  gcc    gaaggcua ugcgCGCGAU   GUCC UGG  CUga  aucg u
cc   --gu        g          GAA    A   -A    cg    c 

>cqu-mir-315 (-29.40)   [cqu-miR-315:17-38]

- a      c   aaa                A      --c   cau 
 g guguuu uau   aUUUUGAUUGUUGCUC GAAAGC   gug   u
 | |||||| |||   |||||||||||||||| ||||||   |||   c
 c cacaaa aua   ugagacuaaugacgag cuuucg   uac   g
a -      -   aac                -      ccu   aaa 

>cqu-let-7 (-35.29)   [cqu-let-7:16-36] [cqu-let-7*:56-77]

uc  u    c   --      G    U            uuaaaaa 
  gc gcuc cac  guUGAG UAGU GGUUGUAUAGUa       u
  || |||| |||  |||||| |||| ||||||||||||        
  cg cggg gug  CAAUUC AUCG CUAACGUAUCau       u
uc  -    a   uu      G    C            cuauaac 

>cqu-mir-13 (-28.40)   [cqu-miR-13:55-76]

     -gu    a            cc     uacau    a 
guuca   ucgu aaaaugguugug  gugug     uuga c
|||||   |||| ||||||||||||  |||||     ||||  
caagu   AGCA UUUUACCGACAC  UAUac     aacu a
     uUG    G            --     -uuau    u 

>cqu-mir-957 (-46.80)   [cqu-miR-957:61-82]

aa      uu     g              g       -guau   g 
  ggccau  ccggc uuaguuuugggcgg uuuuagu     uuc a
  ||||||  ||||| |||||||||||||| |||||||     ||| u
  uuggug  gguCG AGUCAAAACCUGCC AAAGUua     gag g
gc      gc     G              -       acuau   a 

>cqu-mir-999 (-43.00)   [cqu-miR-999:56-77]

cc    a   g              g    ga    a     cau 
  gguc ccc cagggacgcggucu gcag  aaua uuugg   u
  |||| ||| |||||||||||||| ||||  |||| |||||    
  cuag ggg guuUCUGUGUCAGA UGUC  UUGU aaacu   a
uc    c   a              A    AA    -     uag 

>cqu-mir-277 (-41.30)   [cqu-miR-277:63-84]

ua           -   gu    -            ua      uuccc 
  guuuuggagug cgu  caga agugcauuuaca  gguauu     g
  ||||||||||| |||  |||| ||||||||||||  ||||||      
  uaagaccuuaC GCA  GUCU UCACGUAAAUgu  uuauga     u
ac           A   UG    A            --      cgauu 

>cqu-mir-965 (-39.10)   [cqu-miR-965:58-79]

cu    g  u     gg      uc         c    uug auu 
  ggca au cugaa  gggaaa  cugugcgcu uaug   c   u
  |||| || |||||  ||||||  ||||||||| ||||   |    
  ccgu ug gacUU  CCCUUU  GAUAUGCGA AUac   g   u
ac    g  c     -A      UC         -    cca cua 

>cqu-mir-252 (-25.12)   [cqu-miR-252:11-32] [cqu-miR-252*:44-65]

ga       aC        A U  C     AGaga 
  auucuuu  UAAGUACU G GC GCAGG     u
  |||||||  |||||||| | || |||||     u
  ugagaaG  AUUCGUGA C CG CGUCC     u
--       CU        A C  U     ccaag 

>cqu-mir-993 (-36.00)   [cqu-miR-993:18-39] [cqu-miR-993*:64-83]

ag   u   cc    cc    -      UUC          -    uaaca 
  cgc ccu  guga  UACC CUGUAG   CGGGCUUUUg uggu     a
  ||| |||  ||||  |||| ||||||   |||||||||| ||||      
  gug gga  cacu  auGG GAUAUC   GCUCGAAGac auua     a
aa   -   --    cu    A      UUU          u    uauaa 

>cqu-mir-278 (-47.10)   [cqu-miR-278:67-88]

aa  -u     cuu   -            u     u  g     gugccauuu 
  gu  cuggu   ggu gcggacggacga agucu ca cgacc         g
  ||  |||||   ||| |||||||||||| ||||| || |||||         a
  cg  gaccg   cca ugUUUGCCUGCU UCAGG GU GCUgg         a
aa  uu     ---   a            U     -  G     guuucccaa 

>cqu-mir-970 (-26.40)   [cqu-miR-970:54-74]

au       a    g    u    u       gu     ugcau 
  accuuuu aaga aguu gcgu ugucuua  uggua     u
  ||||||| |||| |||| |||| |||||||  |||||      
  uggaaaa uuuU UCGG CGCA ACAGAAU  ACUau     u
uc       c    A    -    C       --     uaaaa 

>cqu-mir-283 (-44.70)   [cqu-miR-283:23-45]

ca    ug              CA       C   U         -cuuuc   a 
  gauu  uucggcugaaaggu  AUAUCAG UGG AAUUCUGGG      caa c
  ||||  ||||||||||||||  ||||||| ||| |||||||||      ||| c
  cugg  aagcugauuuuuca  uauaguc acc uuagggccc      guu c
-a    ua              cc       a   -         uucgcu   g 

>cqu-mir-9 (-41.60)   [cqu-miR-9:23-44] [cqu-miR-9*:70-91]

au   ua          c  a            CU    G     u  uga   ug 
  gcg  uaauuuccgg ug aUCUUUGGUAUU  AGCU UAGAa gu   gcu  u
  |||  |||||||||| || ||||||||||||  |||| ||||| ||   |||   
  cgu  guuaaggguc ac UGGAGACCAUGA  UCGA AUcuu ua   ugg  u
gu   uc          a  C            UU    A     c  ---   ca 

>cqu-mir-305 (-30.60)   [cqu-miR-305:15-36] [cqu-miR-305*:53-72]

aa     -     cu U         U  G     CU   ugcu 
  uguca caugu  A UGUACUUCA CA GUGCU  ggu    u
  ||||| |||||  | ||||||||| || |||||  |||     
  acagu gugua  u ACAUGAGGU GU CACGG  cca    u
ug     c     au C         U  A     -C   uagc 

>cqu-mir-317 (-37.74)   [cqu-miR-317*:17-42] [cqu-miR-317:55-75]

ga   a  uc      C       -   --     C     UUGCau 
  gga uu  ggcuac GGGAUAC ACC  CUGUG UCGCU      u
  ||| ||  |||||| ||||||| |||  ||||| |||||       
  ccu ag  ccggug cUCUAUG UGG  GACAC AGUga      c
ag   -  uc      a       G   UC     A     ucaaag 

>cqu-mir-981 (-39.77)   [cqu-miR-981:62-83]

aa   -      -c  gau         -      a       uacugauu 
  aca ccuugu  ug   cggguuucg cggcaa cgggcug        c
  ||| ||||||  ||   ||||||||| |||||| |||||||         
  ugu ggaacg  ac   GUCCAAAGC GCUGUU GCUUgac        g
aa   u      uc  -AC         A      -       uaaaaagu 

>cqu-mir-100 (-44.90)   [cqu-miR-100:23-44] [cqu-miR-100*:64-84]

-aaca  a   ----      u      A      G     AA      c  cccu 
     gc uuu    cccauu gcgggA CCCGUA AUCCG  CUUGUG ug    u
     || |||    |||||| |||||| |||||| |||||  |||||| ||    u
     cg aaa    ggguag cgucCU GGGUAU UAGGC  GAACau gc    u
agcua  a   aggu      c      A      A     CG      u  acau 

>cqu-mir-989 (-38.30)   [cqu-miR-989:65-85]

-acuc     u      -ac        c    uu    u   u  ccaua a 
     gguca ggggaa   gccgcuac ucgc  ucac ugg gg     g u
     ||||| ||||||   |||||||| ||||  |||| ||| ||     |  
     ucggu ucccuu   UGGUGAUG AGUG  AGUG acc cu     c u
ccuua     -      cCA        C    -U    U   -  -auag u 

>cqu-mir-1175 (-30.50)   [cqu-miR-1175:23-44] [cqu-miR-1175*:61-81]

aaaaauuaucac        a     -    U     UC  A      agua 
            gauaugaa uAAGU GGAG AGUGG  UC UCGcuu    u
            |||||||| ||||| |||| |||||  || ||||||     
            uuauacuu auUCA CCUC UCAUC  AG AGUgaa    u
-caaagcucgau        a     G    U     UU  -      aaga 

>cqu-mir-276-1 (-38.90)   [cqu-miR-276*:22-40] [cqu-miR-276:66-87]

------   uuu      u  c   cu    A     AG          c  --   uu 
      gag   gaaagu ca ccg  AGCG GGUAU  AGUUCCUaug gu  uga  g
      |||   |||||| || |||  |||| |||||  |||||||||| ||  |||   
      cuu   cuuucg gu ggu  UCGU CCAUA  UCAAGGAUac ua  gcu  g
agacua   -gc      -  a   UC    G     CU          c  uc   ua 

>cqu-mir-276-2 (-42.20)   [cqu-miR-276*:23-41] [cqu-miR-276:63-84]

---c  --gugg     gauu    uc    A     AG         --   g  a 
    gu      uuggu    gcca  AGCG GGUAU  AGUUCCUac  guu cg g
    ||      |||||    ||||  |||| |||||  |||||||||  ||| ||  
    ca      agccg    cggu  UCGU CCAUA  UCAAGGAUg  uaa gc u
aaaa  acuuaa     --au    UC    G     CU         gc   a  u 

>cqu-mir-276-3 (-38.90)   [cqu-miR-276*:22-40] [cqu-miR-276:66-87]

-----caguuu      u  c   cu    A     AG          c  u  uuc 
           gaaagu ca cca  AGCG GGUAU  AGUUCCUaug gu gu   g
           |||||| || |||  |||| |||||  |||||||||| || ||    
           cuuucg gu ggu  UCGU CCAUA  UCAAGGAUac ua cg   a
agacuacuugc      -  a   UC    G     CU          c  u  cuu 

>cqu-mir-12 (-15.10)   [cqu-miR-12*:39-65] [cqu-miR-12:66-88]

aagauaaccugcuggugcucacgugucccgaaaagaagAAGAAUGAAAAUCCUGCCCUGUCGGAUU       -         
                                                                  GAGUAUU ACAUCAGG 
                                                                  ||||||| ||||||| U
                                                                  cuuauag ugUGGUCA 
------------------------------------------------------------------       c         

>cqu-mir-210 (-22.60)   [cqu-miR-210*:9-30] [cqu-miR-210:44-66]

cucauugc     C  AC   -         -   g 
        AGCUG UG  CAC UGCACAAGA uua a
        ||||| ||  ||| ||||||||| ||| u
        UCGGC AC  GUG GCGUGUUCu agu u
----guUA     A  -A   U         c   a 

>cqu-mir-263 (-28.00)   [cqu-miR-263:9-31]

    ac uA   G     GA    UU      uau   u 
guac  g  AUG CACUG  AGAA  CACGGg   gau u
||||  |  ||| |||||  ||||  ||||||   ||| a
caug  c  uac gugac  ucuu  gugccc   cua a
    gu cc   g     gg    --      ---   u 

>cqu-mir-92-1 (-34.16)   [cqu-miR-92:55-73]

a    -         c   ac       g    c   uugaca 
 ucaa ucuacgcau ggu  ggacagg gcaa auu      u
 |||| ||||||||| |||  ||||||| |||| |||      u
 gguu aggugcgua CCG  CCUGUUC CGUU uaa      u
c    g         U   GC       A    A   ucgaag 

>cqu-mir-92-2 (-32.66)   [cqu-miR-92:52-70]

aa         c   ac       g    c   uugaca 
  ucuacgcau ggu  ggacagg gcaa auu      u
  ||||||||| |||  ||||||| |||| |||      u
  aggugcgua CCG  CCUGUUC CGUU uaa      u
ug         U   GC       A    A   ucgaag 

>cqu-mir-71 (-38.15)   [cqu-miR-71:6-27] [cqu-miR-71*:56-77]

--     A        U            aguuuua   ugcauu 
  cggca GAAAGACA GGGUAGUGAGAU       ccc      c
  ||||| |||||||| ||||||||||||       |||       
  gucGU CUUUCUGU UCCAUCACUCUa       ggg      g
ua     A        -            -------   ccaaaa 

>cqu-mir-190-2 (-34.60)   [cqu-miR-190:15-38]

g      uc      -            AU      U  u   auu 
 ggugau  cggugA GAUAUGUUUGAU  UCUUGG UG uaa   u
 ||||||  |||||| ||||||||||||  |||||| || |||    
 cuacug  gucauu uuauacaaacua  aggacc ac auu   u
-      gu      a            --      c  u   aua 

>cqu-mir-190-1 (-35.30)   [cqu-miR-190:15-38]

g      uc      -            AU      U  u   auu 
 ggugau  cagugA GAUAUGUUUGAU  UCUUGG UG uaa   u
 ||||||  |||||| ||||||||||||  |||||| || |||    
 cuacug  gucauu uuauacaaacua  aggacc ac auu   u
-      gu      a            --      c  u   aua 

>cqu-mir-1000 (-31.60)   [cqu-miR-1000:19-39]

--uuuu       aa    uAUAU       UC         --  uu 
      gcuagaa  cgau     UGUCCUG  ACAGCAGUa  cu  u
      |||||||  ||||     |||||||  |||||||||  ||  c
      cgaucuu  guua     acagggc  uguugucau  ga  c
cacugc       -a    cauuu       uu         uc  uu 

>cqu-mir-10 (-37.10)   [cqu-miR-10*:13-34] [cqu-miR-10:52-74]

--          cu   -  G    U           ---  aau 
  uguucuacau  ACC CU UAGA CCGAAUUUGUU   ug   a
  ||||||||||  ||| || |||| |||||||||||   ||    
  acggggugug  UGG GA AUCU GGCUUAAACag   ac   u
uu          UU   A  G    U           cga  aaa 

>cqu-mir-11 (-33.53)   [cqu-miR-11*:9-28] [cqu-miR-11:52-73]

gug   c          C        CC    ugccccg 
   ccg gCGAGAACUC GGCUGUGA  ugug       u
   ||| |||||||||| ||||||||  ||||       g
   ggu CGUUCUUGAG CUGACACU  ACac       u
---   U          U        --    uucaagu 

>cqu-mir-8 (-23.30)   [cqu-miR-8*:10-31] [cqu-miR-8:49-70]

guc  uu -       -   G     C      --    u 
   ug  c aCAUCUU ACC GGCAG AUUAGA  uauu u
   ||  | ||||||| ||| ||||| ||||||  |||| u
   gc  g UGUAGAA UGG CUGUC UAAUcu  auaa u
--a  cu c       A   A     A      uc    a 

>cqu-mir-285 (-19.80)   [cqu-miR-285*:5-27] [cqu-miR-285:46-67]

aa      GC   C  A    AG    ug  auuc 
  guACUG  UUC AA GGUG  UAGA  gc    g
  ||||||  ||| || ||||  ||||  ||     
  CAUGAC  AAG UU CCAC  AUcu  cg    a
--      UA   C  A    -G    --  cuau 

>cqu-mir-2 (-40.82)   [cqu-miR-2:53-75]

         ca    -     -         a     uccuc 
aacuguauc  cucu caaag uggcuguga auggu     c
|||||||||  |||| ||||| ||||||||| |||||     a
uuggcauag  GAGA GUUUC ACCGACACU Uaccg     g
         -C    A     G         A     cuaaa 

>cqu-mir-137 (-31.90)   [cqu-miR-137:53-74]

-------a     g ug  c   c       ug   uac     c  ug 
        acuug u  gc acg guauucu  ggu   uaaca ac  u
        ||||| |  || ||| |||||||  |||   ||||| ||  u
        ugaac a  uG UGC CAUAAGA  UCG   AUugu ug  u
acaccuug     - gu  A   A       GU   -UU     -  ua 

>cqu-mir-932 (-26.40)   [cqu-miR-932*:4-25] [cqu-miR-932:43-62]

      A       G   A        uauuu 
gcuUCA UUCCGUA UGC UUGCAGug     u
|||||| ||||||| ||| ||||||||      
cgaAGU AAGGUGU ACG AACGUcau     u
      G       A   -        ccacu 

>cqu-mir-14 (-37.70)   [cqu-miR-14:57-78]

-----------c   a  a   u       c    uu      u   ggu   ac 
            ccg ua gcc gugggag gaga  aaggcu gcu   uuc  g
            ||| || ||| ||||||| ||||  |||||| |||   |||   
            ggc au ugg UAUCCUC CUCU  UUCUGA Uga   gag  u
gagcaacuucgu   a  a   u       U    UU      C   aau   cu 

>cqu-mir-279 (-28.41)   [cqu-miR-279*:6-28] [cqu-miR-279:49-70]

u   cG         A       -------------     a 
 ugu  AUGGGUGUG AUCUAGU             GGUUC c
 |||  ||||||||| |||||||             |||||  
 acA  UACUCACAC UAGAUCA             ucgag a
a   AU         C       GUgucaaaccguu     u 

>cqu-mir-996 (-34.80)   [cqu-miR-996:63-82]

aacu      u   c    u       -      g     uuuuc     c 
    caauuu cgu ggcg gcaugua ucuggu cacgg     aguug a
    |||||| ||| |||| ||||||| |||||| |||||     ||||| a
    guugaa gua cUGC CGUACAU AGAUCA GUgcu     ucgau u
----      -   u    U       U      -     -----     a 

>cqu-bantam (-19.12)   [cqu-bantam:5-27] [cqu-bantam*:46-66]

agaaC         UUUUC     G    auuug 
     CGGUUUUCA     GAUCU ACuu     a
     |||||||||     ||||| ||||     u
     GUCGAAAGU     CUAGA Ugag     u
uuuuA         -UUUA     G    acaau 

>cqu-mir-1891 (-29.30)   [cqu-miR-1891:15-36]

--    uc        UGA         UU        uug a 
  uuuu  ugucaugu   GGAGUUAAU  GCGUGUUU   c u
  ||||  ||||||||   |||||||||  ||||||||   |  
  aaaa  guaguaca   ucucaauua  ugcacaaa   g u
cg    ua        ugg         cc        uua c 

>cqu-mir-7 (-27.40)   [cqu-miR-7:16-38]

uc    u  u     U        A U     U      ug   ua 
  gcaa au uugua GGAAGACU G GAUUU GUUGUu  gcu  a
  |||| || ||||| |||||||| | ||||| ||||||  |||   
  cguu ug aacau cuuucuga c cuaaa uaacaa  uga  g
gu    -  c     -        c u     -      --   ua 

>cqu-mir-184 (-30.80)   [cqu-miR-184:52-73]

---   u     ca         -     u  -  --c    u  u 
   gug auucg  cccuuauca uucuu cg cc   cgug ac g
   ||| |||||  ||||||||| ||||| || ||   |||| ||  
   cac ugggc  GGGAAUAGU AAGAG GC GG   gcgu ug u
uuc   -     cC         C     -  A  Uca    u  u 

>cqu-mir-31 (-27.02)   [cqu-miR-31:12-34] [cqu-miR-31*:48-69]

--------      -caacuU       U     C         agu 
        aauugg       GGCAAGA GUUGG AUAGCUGAa   u
        ||||||       ||||||| ||||| |||||||||   u
        uuaacc       CUGUUCU CAACU UAUCGAuuu   u
acaguuau      uuuuUAU       U     -         gag 

>cqu-mir-1890-1 (-33.70)   [cqu-miR-1890:50-71]

-          g     ug    c   u   auc  gu 
 uacggccaga cuaau  gaga uuc uga   gu  u
 |||||||||| |||||  |||| ||| |||   ||  g
 guguuGGUCU GAUUA  UUCU AAG acu   ca  u
g          G     GU    A   U   -ga  ag 

>cqu-mir-1890-2 (-34.10)   [cqu-miR-1890:54-75]

-------guu           g     ug    c   u   auc  gu 
          uuacggccaga cuaau  gaga uuc uga   gu  u
          ||||||||||| |||||  |||| ||| |||   ||  g
          gguguuGGUCU GAUUA  UUCU AAG acu   ca  u
agguucuagc           G     GU    A   U   -ga  ag 

>cqu-mir-980 (-31.90)   [cqu-miR-980:50-68]

acu     ucg             a  u      c  ac 
   acaau   gccuuucauuggg cg cuagcu gu  u
   |||||   ||||||||||||| || |||||| ||  u
   uguua   CGGGAAGUGAUCC GU GAUuga ca  g
---     uaa             -  C      -  aa 

>cqu-mir-308 (-35.90)   [cqu-miR-308:47-64]

--                    gc    u ug u g 
  uuucgcaguauauucuugug  uuga g  u a a
  ||||||||||||||||||||  |||| |  | |  
  agaguGUCAUAUGAGGACAC  Aacu c  g u a
ag                    UA    - gu c a 

>cqu-mir-79 (-31.74)   [cqu-miR-79:9-31]

ucg            CGC       G     uagaau 
   uccauGCUUUGG   UUUAGCU UAUGA      u
   ||||||||||||   ||||||| |||||       
   agguacgaaacc   agaucga auacu      u
-ga            auu       a     uuauaa 

>cqu-mir-33 (-27.00)   [cqu-miR-33:3-23]

------  -G          -----        C  g     c 
      gg  UGCAUUGUAG     UUGCAUUG Ac uuuug g
      ||  ||||||||||     |||||||| || |||||  
      cc  acguaacguc     gacgugac ug aaagc u
ggugga  aa          uucau        c  a     u 

>cqu-mir-2951 (-20.80)   [cqu-miR-2951:4-26] [cqu-miR-2951*:32-64]

-gg    -GC    C    A ----      -   ac 
   gAGA   UCAG ACGC G    GGGUGG Cgc  u
   ||||   |||| |||| |    |||||| |||  A
   uuuU   GGUC UGUG C    CCCAUC GCG  C
cug    AAA    A    C UUGG      U   CC 

>cqu-mir-2941-1 (-29.20)   [cqu-miR-2941-1*:5-25] [cqu-miR-2941:43-64]

uac      -UG          G    uug      
   cCGUGG   UUUAGUCGUA UGCa   guuuu 
   ||||||   |||||||||| ||||   |||| u
   GGCACC   AGAUCGGCAU AUgu   caaga 
aua      UCA          G    ---      

>cqu-mir-2941-2 (-35.49)   [cqu-miR-2941-2*:3-27] [cqu-miR-2941:51-72]

       -    C         -    G      uugacga 
guUGAAU UUCG UGGAGUUCU GCCG Auugca       u
||||||| |||| ||||||||| |||| ||||||        
cagcuua aGGC ACCUCAAGA CGGC UGAUgu       u
       c    -         U    A      uuaaagg 

>cqu-mir-2952 (-30.00)   [cqu-miR-2952:41-62]

-ga   a      c     g       --   g 
   ucc caguca ggcug uacugca  uug c
   ||| |||||| ||||| |||||||  |||  
   GGG GUCAGU CCGGC AUGAUgu  agc u
cuC   A      A     -       cu   a 

>cqu-mir-133 (-38.70)   [cqu-miR-133:77-98]

----cu   -   aa  g           cuuc  gu    ucgacaaauauuugcaaa 
      uca ccg  ca uagcugguuga    gg  caaa                  g
      ||| |||  || |||||||||||    ||  ||||                  a
      agu ggc  gU GUCGACCAACU    CC  GUUu                  u
uuaguu   u   ag  -           -UCC  UG    acuaaagaguuuccuuua 

>cqu-mir-306 (-29.80)   [cqu-miR-306:6-27]

uu    C          -  A   U   c ugau  cau 
  ggcU AGGUACUGAG UG CUC CAG g    ac   u
  |||| |||||||||| || ||| ||| |    ||    
  ccgg uccauggcuc ac gag guc c    ug   u
--    u          c  -   u   - ---u  acc 

>cqu-mir-87 (-39.50)   [cqu-miR-87:49-70]

aa      -       ca        -      aa    ggu 
  gauugu cucuggc  gccugaag uuugcu  accu   u
  |||||| |||||||  |||||||| ||||||  ||||   c
  cuaaca gaggcUG  UGGACUUU AAACGA  UGga   g
ca      a       UG        U      -G    acu 

>cqu-mir-1889 (-55.40)   [cqu-miR-1889:17-38] [cqu-miR-1889*:104-125]

-uu    c u     a U        A       A      uuuuucaacggcaaagcacaaacuuugaa 
   gcac g cccgg g AAUCUCAA UUGUAAC GUGGgu                             a
   |||| | ||||| | |||||||| ||||||| ||||||                              
   cgug c gggcc C UUGGGGUU GACAUUG CACcca                             c
ugc    - u     C U        A       -      uaucguuuacaagagagcuugccucccug 

>cqu-mir-316 (-30.79)   [cqu-miR-316:36-57]

-------uu   c  cc   -aa  aaccccuu        uu          C C  A   C   u  uguu g 
         cac aa  ugg   cg        uugauuga  UGUCUUUUUC G UU CUG CGg gg    c a
         ||| ||  |||   ||        ||||||||  |||||||||| | || ||| ||| ||    |  
         gug uu  acu   gc        aacuaacu  gcggaaaaag c aa gac gcc cu    g a
aagaacccc   a  aa   gcc  aagacauu        cc          a a  c   a   -  ---- a 

>cqu-mir-375 (-39.60)   [cqu-miR-375:69-90]

gu   uaac      au   aguu    a         u   cg      ggc   g 
  gcc    aggagc  ccg    acuc agccggacg aac  aaacuu   ucu c
  |||    ||||||  |||    |||| ||||||||| |||  ||||||   ||| u
  ugg    ucuucg  ggc    UGAG UCGGUUUGC UUG  UUUgag   agg g
-g   ---u      --   guAU    C         -   --      --a   u 

>cqu-mir-309 (-32.40)   [cqu-miR-309:54-74]

-  -gc      --      u      cg       uug  g  cu 
 gc   ucgguu  uaugcg caaacu  gcucagu   gu aa  u
 ||   ||||||  |||||| ||||||  |||||||   || ||  u
 cg   aguuag  auaCGC GUUUGA  CGGGUCA   ca uu  g
a  gaa      ua      U      UA       CUa  g  ua 

>cqu-mir-998 (-43.70)   [cqu-miR-998:65-83]

aca  -uguu     auu    ga     c        gu     -  g  uu 
   ga     ggcca   ccgg  cugaa ucucgugg  cugca gu cu  u
   ||     |||||   ||||  ||||| ||||||||  ||||| || ||  c
   cu     cuggu   ggcc  GACUU AGAGUACC  GAUgu ca gg  g
--g  uuguu     cgu    uC     -        AC     u  a  uu 

>cel-mir-2953 (-19.40)   [cel-miR-2953-5p:1-21] [cel-miR-2953-3p:40-61]

--        U   C    AA     uaug 
  UACAGAAG GUU GUGA  AUaaa    u
  |||||||| ||| ||||  |||||    g
  AUGUCUUC CGA CACU  Uauuu    u
CG        U   U    AG     uuuu 

>gga-mir-2954 (-30.10)   [gga-miR-2954:37-58]

cug        -ug     a   u  ua -   a 
   agagggcu   gggag gga ug  g ugg g
   ||||||||   ||||| ||| ||  | |||  
   ucucucgA   UCCUC CCU AC  C ACc c
cgg        CGA     A   U  CC U   u 

>tgu-mir-1329 (-36.79)   [tgu-miR-1329:15-37]

  u   ug   a    CA               U  Auuucuc 
uc ggu  uag gaUA  GUGAUCAGGUUACGA GG       a
|| |||  ||| ||||  ||||||||||||||| ||        
ag uca  auc cuau  cacuaguucgaugcu cc       a
  u   gu   c    ag               -  aacaaug 

>tgu-mir-2955 (-56.50)   [tgu-miR-2955:75-95]

   c    a uuc    ug    a            ac        cu  aua   uu 
gug gagu c   cagc  cuuu gugcaaagucca  agcuuagc  ga   guc  c
||| |||| |   ||||  |||| ||||||||||||  ||||||||  ||   |||   
uac cuca g   gucg  gaaa UACGUUUCAGGU  UCGAAUcg  cu   cag  u
   a    c --u    gu    C            CU        ac  cga   uc 

>tgu-mir-1451 (-67.50)   [tgu-miR-1451:24-46]

   ca   g                G           A    C   uuca 
gag  agc caggagcugcugccUC CACAGGAGCAA UUAC GCG    g
|||  ||| |||||||||||||||| ||||||||||| |||| |||    c
cuc  ucg guccucggcgauggag guguccucguu aaug cgc    u
   -c   -                a           c    a   cuaa 

>tgu-mir-1677 (-37.70)   [tgu-miR-1677:11-29]

      - u        A  -GC            aag 
uagggu c gaUCCUGC CC   UGAAGUCAaugg   c
|||||| | |||||||| ||   ||||||||||||    
auucca g uuaggacg gg   acuucaguuacu   u
      a u        a  aua            guu 

>tgu-mir-1805 (-34.00)   [tgu-miR-1805*:16-36] [tgu-miR-1805:55-74]

gu    ua   u            C      -    --Agc   a 
  ggaa  uuc gggAGUUGUAGU UUUCAA ACAG     uuc c
  ||||  ||| |||||||||||| |||||| ||||     |||  
  ccuu  aag cccUCGACAUCA AAGGUU UGUc     agg a
cu    -c   u            C      A    cauac   a 

>tgu-mir-2956-1 (-50.80)   [tgu-miR-2956:14-35]

            a                       cug 
aagugggaauaa UAGGAAACCAGGCUUUAUUAGUu   a
|||||||||||| |||||||||||||||||||||||   u
uucauccuuauu auccuuugguccgaaauaaucaa   u
            c                       aua 

>tgu-mir-2956-2 (-52.40)   [tgu-miR-2956:14-35]

    a                                au 
aagu ggaauaagUAGGAAACCAGGCUUUAUUAGUuu  a
|||| ||||||||||||||||||||||||||||||||  a
uuca ccuuauuuauccuuugguccgaaauaaucaag  u
    c                                ac 

>tgu-mir-2957 (-35.20)   [tgu-miR-2957:47-68]

     ga           ag   a      g  auc 
ccgga  caaaguucugu  ugc cugacu cu   g
|||||  |||||||||||  ||| |||||| ||   u
ggccu  GUUUCAAGACA  GUG GGCUga ga   a
     uC           CU   A      -  ccc 

>tgu-mir-2958 (-51.80)   [tgu-miR-2958:22-44]

      -cu      a   ugaU        AGAU      C    cau  c 
gggagc   ggcugg gcc    GCUGGUGU    GUGUCA AGUg   cc c
||||||   |||||| |||    ||||||||    |||||| ||||   || a
cccucg   cugacc cgg    ugaccaca    cacggu ucac   gg g
      ucc      c   -uuu        --ac      c    --c  u 

>tgu-mir-1784 (-45.90)   [tgu-miR-1784:55-76]

uga         g                  g  a      agag 
   uuucuuggg cccaauucugcucuuauu aa ucagug    u
   ||||||||| |||||||||||||||||| || ||||||     
   ggagaaucc gggUUAAGACGAGGGUAA UU AGUuac    c
aca         a                  A  C      cguc 

>tgu-mir-2959 (-50.70)   [tgu-miR-2959:16-37]

u    --     ag           -        --AAG    -ug a 
 gggg  gguga  gagUUCCUGGA GUGAGCUG     GUUc   g g
 ||||  |||||  ||||||||||| ||||||||     ||||   |  
 cccc  ccacu  cucgaggaccu cacucgac     uagg   c c
a    gu     --           a        acuaa    uga u 

>tgu-mir-1662 (-36.40)   [tgu-miR-1662:6-27]

u             U AUA        guaug 
 gggcUUGACAUCA C   CUUGGGAU     a
 ||||||||||||| |   ||||||||      
 cccggacuguagu g   gaacccug     c
a             c gac        aagca 

>tgu-mir-2960 (-49.49)   [tgu-miR-2960:60-80]

  cc    c  u    g  g       gg      u     uccccuc 
gg  agag gg ggag ug aggcagc  cggguc ccucc       c
||  |||| || |||| || |||||||  |||||| |||||        
cc  ucuc uc ccuc AC UCCGUCG  GCUCAG GGAgg       c
  uc    -  -    G  G       --      C     uccucga 

>tgu-mir-2961 (-128.70)   [tgu-miR-2961:57-79]

      cc     c        - -      ------         ---  cc  u    ga     A       A G          CU   c 
cccggg  ccgcc gccgccuc c ccgucg      cccuucccc   gg  gc cgcg  ccggg GGAAGGU G GCGGGCGUCG  ccc c
||||||  ||||| |||||||| | ||||||      |||||||||   ||  || ||||  ||||| ||||||| | ||||||||||  |||  
gggccc  ggcgg cggcggag g ggcggu      gggaagggg   cc  cg gcgc  ggccc ccuuccg c cgcucgcggc  ggg a
      -u     -        c u      gccucg         aau  -c  u    -g     c       - g          uc   c 

>tgu-mir-2962 (-68.90)   [tgu-miR-2962:15-36] [tgu-miR-2962*:53-73]

    ug             C    A          --A   g 
gccc  ggaaggggAGGAG GAGG AGGGGAUGGG   ugg c
||||  ||||||||||||| |||| ||||||||||   ||| u
cggg  ccuuucCCUCUUC CUCC UCCCCUACcu   acc a
    gu             U    G          ggg   a 

>tgu-mir-2963 (-79.50)   [tgu-miR-2963:99-120]

    g  -    u   -g     -  a    u  g  c    uuggaa      ----        ga u      -c      g        g a 
ccag ag guuu ggg  uggcc uc ccuc ca ca ggau      uugagu    cacugggu  c ucccag  aucccu uuuccuuu g u
|||| || |||| |||  ||||| || |||| || || ||||      ||||||    ||||||||  | ||||||  |||||| |||||||| |  
gguc uc cgag ccu  gccgg gg ggag gu gu ucug      aacucg    gugacuuA  G AGGGUU  UAGGGA AAAggagg c c
    g  g    u   ag     u  a    -  g  -    -uagga      agcu        GA U      UU      -        g u 

>tgu-mir-2964 (-74.40)   [tgu-miR-2964:91-111]

    ga   cc      -      cgcc   gga  u   ac       aca   -        a         guu  uac g 
cccc  gaa  guccug gagccc    gga   gg gaa  cucugcu   gau guccagac caauucuug   cg   g c
||||  |||  |||||| ||||||    |||   || |||  |||||||   ||| |||||||| |||||||||   ||   |  
gggg  cuu  uagggc cucggg    ccu   cc cuu  gaggcga   cua CAGGUUUG GUUAAGAAC   gc   c u
    ac   -c      g      ---c   --a  -   -a       gga   A        C         -AC  -ua c 

>tgu-mir-146a (-54.80)   [tgu-miR-146a*:29-50] [tgu-miR-146a:71-92]

u    c aa  uug    uu  c    cU           U           uuc  gu 
 guga g  ug   gcag  cc agcu  GAGAACUGAAU CCAUGGACUgg   ca  u
 |||| |  ||   ||||  || ||||  ||||||||||| |||||||||||   ||   
 cacu c  ac   cguc  gg ucga  CUCUUGACUUA GGUACCUGAcu   gu  c
a    u aa  -ua    --  u    -U           U           ugu  ac 

>tgu-mir-458 (-36.80)   [tgu-miR-458:49-70]

     cg   a   c        c        ca       
ggugc  aug cag gccauuuc agagcuau  acagug 
|||||  ||| ||| |||||||| ||||||||  ||||| u
ucacg  uac GUC UGGUAAGG UCUCGAUA  uguuac 
     aa   C   U        U        -c       

>tgu-mir-1729 (-52.40)   [tgu-miR-1729:22-44]

     aca  -  ug       -    C        G    C    g   cua 
gguag   gg cc  auccugc AUCC UUACUCAC UGAG AGUC ucu   u
|||||   || ||  ||||||| |||| |||||||| |||| |||| |||   g
ccauc   cc gg  uaggacg uagg aaugagug gcuc ucag gga   u
     --a  a  gu       c    -        -    a    -   aac 

>tgu-mir-2965 (-34.40)   [tgu-miR-2965:33-53]

    --   -       g         --   ag 
cugu  gcu gccuguu cucuggggc  ucc  c
||||  ||| ||||||| |||||||||  |||  u
gaca  ugg cgGACGA GAGACUCCG  AGG  g
    ag   u       -         UC   AC 

>tgu-mir-456 (-33.40)   [tgu-miR-456:51-71]

gu        g   g     uc       acau ug    c 
  guguguga cag caucu  ucagccu    g  gauu c
  |||||||| ||| |||||  |||||||    |  ||||  
  uacguaCU GUU GUAGA  GGUCGGA    C  cuaa u
cu        -   G     UU       ---- gu    a 

>tgu-mir-425 (-43.40)   [tgu-miR-425-5p:16-37] [tgu-miR-425-3p:56-76]

      ug         U       U  CU    C  a  cag a 
gagaga  gcuuuggAA GACACGA CA  CCCG UG gc   c g
||||||  ||||||||| ||||||| ||  |||| || ||   | c
cuuucu  cgaaaccUU CUGUGCU GU  GGGC AC cg   g c
      --         U       -  AG    U  -  aga a 

>tgu-mir-1803 (-45.60)   [tgu-miR-1803:52-73]

  -acuu     a         g   au  u            a 
gg     agggc ugauccaga ccc  ug agucaaugggag c
||     ||||| ||||||||| |||  || ||||||||||||  
cc     uuccg acuAGGUUU GGG  AC UCAGUUAccuuu u
  aucau     g         G   CU  U            u 

>tgu-mir-2966 (-48.50)   [tgu-miR-2966:52-72]

     cg  g  -    u -g   -    ca     g    u 
ccccg  cc cg cccg g  cug cccg  gcgcu cccg g
|||||  || || |||| |  ||| ||||  ||||| |||| c
ggggc  GG GC GGGC C  GGC GGGC  Cgcga gggc u
     aa  -  A    - AG   A    --     -    c 

>tgu-mir-2954 (-32.80)   [tgu-miR-2954*:9-31] [tgu-miR-2954:46-68]

     ag     A   -  CU      GA   uu  ag 
ggagc  uGCUG GAG GG  UGGGGA  GGA  gu  u
|||||  ||||| ||| ||  ||||||  |||  ||   
ucucG  ACGAU CUC CC  ACCCCU  Ccu  cg  g
     --     C   A  UU      -A   --  ag 

>tgu-mir-2967 (-25.40)   [tgu-miR-2967:38-59]

      au        g         u  ua 
gacugc  guuuucua gauuuugau gu  a
||||||  |||||||| ||||||||| ||  u
uugacG  CAGGAGAU UUAAAACUA Ca  g
      AU        G         -  cc 

>tgu-mir-460b (-44.00)   [tgu-miR-460b:25-46] [tgu-miR-460b*:61-81]

    -----u   c  u        cg  C  U       CA         aauu 
ccuc      cca ug ggcucuau  ug CC CAUUGUA  UGCUGUGUG    u
||||      ||| || ||||||||  || || |||||||  |||||||||    g
ggag      ggu ac ucgaggua  AC GG GUAACGU  GCGACAcau    u
    uccacc   a  -        au  A  U       AC         acac 

>tgu-mir-2968 (-50.60)   [tgu-miR-2968:59-81]

    ----c    --c        a  -   c        cu     cc     cg 
gcug     ccug   gaguugcu uc cuc aggucgcu  ggcag  cucgu  u
||||     ||||   |||||||| || ||| ||||||||  |||||  |||||   
cgac     ggac   uucgacga AG GGG UCCAGUGG  UCGUC  gagcg  u
    ccgcu    cac        c  C   U        -U     UC     ag 

>tgu-mir-2969 (-45.90)   [tgu-miR-2969:23-45]

    cu        uu       CA    U       A   A   aagaa  gu 
guuu  gugggagu  cuggguG  GCUG AGGAGCC GUG UGG     cg  u
||||  ||||||||  |||||||  |||| ||||||| ||| |||     ||   
cgaa  cauucucg  gaccuac  cggc uccucgg cgc acc     gu  u
    cc        --       -a    -       a   -   ---gg  au 

>tgu-mir-2970 (-79.30)   [tgu-miR-2970:50-70]

          u ug    g  agg   ucu   ca     -   c ug gG        C  U        ----   g 
agcauguccc c  gcca gc   ggu   ggg  gcucc ugc c  c  ACAGUCAG AG UGGUCUGG    ugu a
|||||||||| |  |||| ||   |||   |||  ||||| ||| |  |  |||||||| || ||||||||    ||| g
uuguacaggg g  cggu cg   cca   ccc  cgagg acg g  g  ugucgguu uc acuagacu    acg c
          - gu    a  gua   ---   ca     g   u gu gg        c  c        cuua   a 

>tgu-mir-2188 (-79.54)   [tgu-miR-2188:54-75]

              cu ug       -cuu  -   ---      ca   c       A     CA   U  C       guauag 
gagguuagauggca  u  ggguuuc    cu gag   gaauau  gac uguggga AGGUC  ACC CA AUGUCCU      a
||||||||||||||  |  |||||||    || |||   ||||||  ||| ||||||| |||||  ||| || |||||||       
uucuagucuaccgu  a  uccagag    ga cuc   cuuaug  cug acacccu uccag  ugg gu uauaggg      a
              ac gu       acuu  a   auu      uc   a       a     ac   u  a       agaaau 

>tgu-mir-2971 (-34.84)   [tgu-miR-2971:16-38]

gc     -u    uuaUA     U  AG   -       Uguu   uauuua 
  cugcu  gcug     AAGCC GU  GAU UGGGUCG    gga      a
  |||||  ||||     ||||| ||  ||| |||||||    |||       
  gacgg  cgac     uucgg ca  cua gucuagc    ccu      c
-c     uc    uaaag     u  cu   c       --uc   ucucuu 

>tgu-mir-2972 (-44.50)   [tgu-miR-2972:19-39]

       ug  a     a C   U  UC    C     -     ac   cc 
ccagacc  ca aggua U AGG GC  AACU CUAUU Uaggc  cag  u
|||||||  || ||||| | ||| ||  |||| ||||| |||||  |||  c
ggucugg  gu ucuau a ucc cg  uuga gauaa gucug  guc  c
       gu  c     a a   c  ga    a     a     aa   ac 

>tgu-mir-2973 (-51.10)   [tgu-miR-2973:11-32]

                              -GCa  ga 
aauucagaagCAUGGGAUAAUCGGAACAAG    cu  a
||||||||||||||||||||||||||||||    ||   
uuaagucuucguacccuauuagccuuguuc    gg  g
                              auaa  au 

>tgu-mir-2974 (-90.60)   [tgu-miR-2974:13-32]

        -g   -  G  A  G                      a  -  u  -       a   cg 
ggggcggg  gcg GC GG UG GCUGGGCCGGGcugggcugggc cg gc cg gcucggc cgg  g
||||||||  ||| || || || |||||||||||||||||||||| || || || ||||||| |||   
ccucgcuc  cgc cg uc gc cggcucggcucggcucggcucg gc cg gc cggguug gcu  g
        ga   a  g  g  a                      -  u  -  a       -   ug 

>tgu-mir-2975 (-38.30)   [tgu-miR-2975:11-31]

      - uua          U           a  gggaa 
ggagca c   AAAGGAAAGG GUGGAUCCAUc ga     g
|||||| |   |||||||||| ||||||||||| ||      
cuucgu g   uuuccuuucc uaccuagguag cu     c
      c uac          -           -  aaggg 

>tgu-mir-2976-1 (-91.20)   [tgu-miR-2976:92-112]

        -     -     g    g    g    g    g  g     ug   c g a   g   a 
cgugccgu gccgu gccgu ccgu ccgu ccgu ccgu cc ugccg  ccg g g gcc ccc g
|||||||| ||||| ||||| |||| |||| |||| |||| || |||||  ||| | | ||| ||| c
guacggcg uggcg uggcG GGCG GGCG GGCG GGCG gg gcggc  ggc c c cgg ggg g
        g     g     G    A    A    A    a  -     gu   - g -   -   c 

>tgu-mir-2976-3 (-83.00)   [tgu-miR-2976:44-64]

  c   g  -gc   a     -cc    c c -gg     -          -----A    -A     G      uc 
gc gga cg   ggg gcggc   cggg c g   cggag gugggaGCGG      GCGG  GCGGA CGGGGa  c
|| ||| ||   ||| |||||   |||| | |   ||||| ||||||||||      ||||  ||||| ||||||   
cg ccu gu   ccc cgccg   gccc g c   gucuc uacccucguc      cgcc  cgucu gcuccu  a
  u   g  auc   c     acc    c a aua     g          augucg    gg     g      cu 

>tgu-mir-2976-2 (-50.70)   [tgu-miR-2976:76-96]

   -   -aca  a  a    ga u g      a   ga   a  ga gg    -     
ccg cuc    ug cc ccgu  c c cugcuc cgu  ccg gc  c  gccg ggcc 
||| |||    || || ||||  | | |||||| |||  ||| ||  |  |||| ||| g
ggc ggg    gc GG GGCG  G G GGCGAG GCG  ggc cg  g  cggc ccgg 
   a   ccgg  c  -    AG C A      -   -a   -  ag --    g     

>tgu-mir-2977 (-28.70)   [tgu-miR-2977:56-76]

caagcug      au    -      gu   c   aa    -g   c 
       gcuaca  gugu ggguuu  ggg uca  gcuu  ucg u
       ||||||  |||| ||||||  ||| |||  ||||  |||  
       uggugu  cACG UCCGAG  CCC AGU  CGag  agc u
---guua      --    G      AU   A   --    ga   u 

>tgu-mir-2978 (-35.90)   [tgu-miR-2978:6-30]

 g   G     -    GAA      -    GU 
g ucu UGGGC UGGG   GGGCUG CUGG  g
| ||| ||||| ||||   |||||| ||||   
c aga gcccg gccc   uccgac gacc  g
 g   -     u    -ac      c    au 

>tgu-mir-2979-1 (-40.90)   [tgu-miR-2979:14-36]

     uu   u   -C       UUU           a  ga a 
cagga  agc ggU  CAGAACC   CAAGGGACUGA gu  g c
|||||  ||| |||  |||||||   ||||||||||| ||  | u
guccu  ucg ucg  gucuugg   guuccuugacu cg  c g
     uu   u   uc       ---           c  ac a 

>tgu-mir-2980-1 (-56.80)   [tgu-miR-2980:49-68]

               uc           g        ca 
aguuuuucagcuuga  cugcuccagug uaagguuu  c
|||||||||||||||  ||||||||||| ||||||||   
ucaaaaagucgaACU  GACGAGGUCAC AUUccaaa  u
               GA           G        aa 

>tgu-mir-2981 (-65.60)   [tgu-miR-2981:69-86]

     cg  a      -     gcguca    c    c -     ---c   g 
gccgc  cc ccgccc cccgg      cccg gccg g cccgc    ccc c
|||||  || |||||| |||||      |||| |||| | |||||    |||  
cggcg  gG GGCGGG GGGCC      GGGC Cggc c gggcg    ggg c
     -a  -      C     ------    -    - a     ccac   c 

>tgu-mir-2982 (-56.40)   [tgu-miR-2982:14-33]

   ---g            G A      GCUU     --  c   a    ccca   cc 
ccu    guagguggcUGU G GGGAGG    GGGAu  gc ggg ccau    gga  c
|||    |||||||||||| | ||||||    |||||  || ||| ||||    |||   
gga    cauccaccgacg c cccuuu    cccug  cg ccc ggua    ccu  c
   agug            g a      --ac     uu  u   -    ----   ug 

>tgu-mir-2983 (-62.20)   [tgu-miR-2983:45-65]

                             ca  a g 
ccggacuggcuccaucaagccuguuggaa  gc g a
|||||||||||||||||||||||||||||  || |  
ggucugaccGAGGUAGUUCGGACGACCUU  cg c a
                             Uc  g c 

>tgu-mir-2984 (-56.70)   [tgu-miR-2984:15-35]

u            - A        A           auaaa  aca  a 
 gcuucaccugcg g GCCUGCUG GAGUGAAAUUG     gg   gc c
 |||||||||||| | |||||||| |||||||||||     ||   ||  
 cgaaguggacgu c cgggcgac cucacuuuaac     cc   cg c
a            u a        a           --gga  ---  a 

>tgu-mir-2985-1 (-38.60)   [tgu-miR-2985:17-38]

      cuu     a         A   G           g 
aaggau   cauua gGUGGGUGG AUA UAUAACAAUau c
||||||   ||||| ||||||||| ||| ||||||||||| u
uuucua   guagu ccauccacc uau auauuguugua a
      --u     c         c   g           a 

>tgu-mir-2985-2 (-39.10)   [tgu-miR-2985:17-38]

    uucuc     a  U          G           a 
aggg     cauua gG GGGUGGAAUA UAUAACAAUau a
||||     ||||| || |||||||||| ||||||||||| a
uccc     guagu cc uccaccuuau auauuguugug a
    ----u     c  u          g           u 

>tgu-mir-2986 (-57.40)   [tgu-miR-2986:101-121]

u  a   -           uc              a aacu  ug -    c    gg    --ca  ug     
 uc ucu gaggaucuuca  uggggaucuucugg g    uc  g agaa uucu  agaa    uc  gaga 
 || ||| |||||||||||  |||||||||||||| |    ||  | |||| ||||  ||||    ||  ||| a
 ag agg cuucuaggggu  ACUUCUAGAGGACC C    AG  c ucuu aaga  ucuu    ag  cuuc 
a  -   u           cU              A ----  GU g    c    aa    caag  gu     

>tgu-mir-2987 (-37.10)   [tgu-miR-2987:49-70]

      - gaa         ag      cc   aaug    u 
uuaggc c   agagcagcc  agccuu  cuc    ucug u
|||||| |   |||||||||  ||||||  |||    |||| u
aguccg g   UCUUGUCGG  UCGGAA  GAG    Agac u
      a -ac         AG      -C   ----    a 

>tgu-mir-2988 (-51.60)   [tgu-miR-2988:2-24]

        ------      G  AGG     agag     aaug   a       agg 
cCCUCUUC      UCUGGA CC   CUGGg    cuggg    uuc ccuggag   a
||||||||      |||||| ||   |||||    |||||    ||| |||||||   a
gggagagg      ggaccu gg   gaucc    gacuc    gag ggaccuc   a
        ucgaga      a  gga     --ga     --ga   -       gua 

>tgu-mir-129 (-39.49)   [tgu-miR-129*:11-31] [tgu-miR-129:54-75]

          -       C   CU      G   uacauaa 
cuucgcgaau CUUUUUG GGU  GGGCUU Cug       c
|||||||||| ||||||| |||  |||||| |||        
gaggcgcuUA GAAAAAC CCA  CCCGAA ggc       u
          C       C   UU      g   ccaucca 

>tgu-mir-139 (-41.40)   [tgu-miR-139:14-36] [tgu-miR-139*:50-72]

   -    c   -      -   U  A            guga 
ggc cugg ugu auUCUA CAG GC UGUGUCUCCAGU    g
||| |||| ||| |||||| ||| || ||||||||||||    u
ccg gacc aca UAAGGU GUC CG GCGUAGAGGUca    a
   u    u   a      U   C  -            guga 

>tgu-mir-363 (-33.80)   [tgu-miR-363:57-77]

       u   gu         ca  a         ga  aguu 
guuuugc guu  cggguggau  cg ugcaauuuu  uu    u
||||||| |||  |||||||||  || |||||||||  ||     
cagaacg caa  GUCUACCUA  GC ACGUUAAaa  ag    a
       c   aU         UG  -         ag  gaug 

>tgu-mir-9-2 (-28.10)   [tgu-miR-9:11-33] [tgu-miR-9*:48-69]

cgaguug   UC               G      ug u 
       uua  UUUGGUUAUCUAGCU UAUGAg  u u
       |||  ||||||||||||||| ||||||  |  
       aaU  AAGCCAAUAGAUCGA AUAcuu  g u
-----aa   GA               A      cu g 

>tgu-mir-9-1 (-30.40)   [tgu-miR-9:11-33] [tgu-miR-9*:50-71]

gauguuu   UC               G     gu   g 
       cug  UUUGGUUAUCUAGCU UAUGA  guu u
       |||  ||||||||||||||| |||||  |||  
       gaU  AAGCCAAUAGAUCGA AUAcu  cga g
-------   GA               A     ac   g 

>tgu-mir-148 (-55.00)   [tgu-miR-148:81-102]

ccccggcgccgguaccggcggaggacugga   u     ag            --a    cc    -   gg 
                              gcc ccgga  caaaguucugug   cacu  gacu cug  u
                              ||| |||||  ||||||||||||   ||||  |||| |||  a
                              cgg ggccu  GUUUCAAGACAU   GUGA  CUga gau  c
------------------------------   c     cU            CAC    --    c   ag 

>tgu-let-7i (-43.00)   [tgu-let-7i:11-32]

gggcc     U                 U   --------  u     ugu 
     cuggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
     ||||| ||||||||||||||||| |||        || |||||   a
     gaucg uuccgucaucgaacgcg caa        uc gcccg   c
---gu     -                 u   uagaggug  -     uua 

>tgu-mir-125-1 (-28.00)   [tgu-miR-125:11-32] [tgu-miR-125-1*:51-72]

cuuuuccua     U    C   A        ----g   u 
         gUCCC GAGA CCU ACUUGUGA     guu u
         ||||| |||| ||| ||||||||     |||  
         CAGGG UUCU GGA UGAACAcu     cga u
-------UC     -    C   C        aacaa   u 

>tgu-mir-125-2 (-25.90)   [tgu-miR-125:11-32] [tgu-miR-125-2*:51-71]

ccccucucaa    U    C           Au        
          UCCC GAGA CCUAACUUGUG  guuuagc 
          |||| |||| |||||||||||  |||||| u
          AGGG UUCU GGAUUGGGCAc  uaaauuu 
-------uCG    -    C           -c        

>tgu-mir-30b (-32.80)   [tgu-miR-30b-5p:11-33] [tgu-miR-30b-3p:53-73]

agugagcga            UC           g gaagc 
         cUGUAAACAUCC  GACUGGAAGCu u     a
         ||||||||||||  ||||||||||| |      
         GACGUUUGUAGG  CUGACUUUCgg g     g
---------            --           g uagac 

>tgu-mir-124-1 (-38.80)   [tgu-miR-124*:44-64] [tgu-miR-124:81-101]

agagagagagagcgagacagagcacucuaaggc    a    cC        A   GA        uaau 
                                 ucug cucu  GUGUUCAC GCG  CCUUGAuu    g
                                 |||| ||||  |||||||| |||  ||||||||    u
                                 aggc gaga  CGUAAGUG CGC  GGAAUuaa    c
-------------------------------cu    -    AC        G   AC        caua 

>tgu-mir-124-2 (-22.42)   [tgu-miR-124*:2-22] [tgu-miR-124:41-61]

----------cC        A   GA        uaaau 
            GUGUUCAC GCG  CCUUGAuu     g
            |||||||| |||  ||||||||     u
            CGUAAGUG CGC  GGAAUuaa     c
cggagcaagaAC        G   AC        cauac 

>tgu-mir-124-3 (-60.20)   [tgu-miR-124*:63-83] [tgu-miR-124:101-121]

ucccgcaagccccgcucgccgccugcccugcuccgagcggggacagcccga  c       - C        A   GA        uaaug 
                                                   gc ccucucu g GUGUUCAC GCG  CCUUGAuu     u
                                                   || ||||||| | |||||||| |||  ||||||||      
                                                   cg ggagaga C CGUAAGUG CGC  GGAAUuaa     c
---------------------------------------------------  a       A -        G   AC        cauac 

>tgu-mir-101-1 (-28.90)   [tgu-miR-101:41-62]

-------                    cg     guaua 
       uuuuucgguuaucaugguac  gugcu     c
       ||||||||||||||||||||  |||||      
       aagAAGUCAAUAGUGUCAUG  CAUGg     g
ugguggu                    -A     aaagu 

>tgu-mir-101-2 (-31.80)   [tgu-miR-101*:5-26] [tgu-miR-101:41-62]

-------uggc                  A    --gu u 
           UCAGUUAUCACAGUGCUG UGCu    c c
           |||||||||||||||||| ||||    |  
           AGUCAAUAGUGUCAUGAC AUGg    g u
cgacgguaggA                  -    aaau u 

>tgu-let-7b (-44.70)   [tgu-let-7b:11-32]

ucuaa    aU                     ucaggguagugauuu 
     cagg  GAGGUAGUAGGUUGUGUGGUU               u
     ||||  |||||||||||||||||||||                
     gucc  uuccgucauccaacauaucaa               g
---ua    -c                     uagaggacuaacccc 

>tgu-mir-7-1 (-25.00)   [tgu-miR-7:11-33] [tgu-miR-7*:53-73]

uaguucugu    A     A       U      uu  gau 
         gUGG AGACU GUGAUUU GUUGUu  uu   a
         |||| ||||| ||||||| ||||||  ||    
         UACC UCUGA CACUAAA CAACag  aa   a
---------    G     -       -      uu  auc 

>tgu-mir-7-2 (-21.90)   [tgu-miR-7:11-33]

ugcuucccugU  -A     A       U     u  au  cu 
           GG  AGACU GUGAUUU GUUGU gu  gg  c
           ||  ||||| ||||||| ||||| ||  ||   
           cc  ucuga cacugaa caaca ca  cc  a
----------u  cg     -       -     c  --  cu 

>tgu-mir-7-3 (-21.90)   [tgu-miR-7:11-33]

ugcuucccugU  -A     A       U     u  au  cu 
           GG  AGACU GUGAUUU GUUGU gu  gg  c
           ||  ||||| ||||||| ||||| ||  ||   
           cc  ucuga cacugaa caaca ca  cc  a
----------u  cg     -       -     c  --  cu 

>tgu-mir-7-4 (-35.90)   [tgu-miR-7:11-33]

--------------u  cu        A  A   G      U     ug g  u 
               gg  cugugUGG AG CUA UGAUUU GUUGU  u uu g
               ||  |||||||| || ||| |||||| |||||  | ||  
               cc  gacauacc uc gau acuaaa caaca  g aa u
cccgacaccgucgga  -c        g  c   -      -     gu g  a 

>tgu-mir-100-1 (-48.60)   [tgu-miR-100:11-31] [tgu-miR-100*:45-67]

-----------------------------------u   -      A   CG     C   A      cuca 
                                    gcu gccaca ACC  UAGAU CGA CUUGUg    u
                                    ||| |||||| |||  ||||| ||| ||||||    a
                                    cgg cgguGU UGG  AUCUA GUU GAACAc    u
ccccuucacgucgucguggggccccacgagaacggu   u      C   AU     U   C      accu 

>tgu-mir-100-2 (-48.60)   [tgu-miR-100:11-31] [tgu-miR-100*:45-67]

-----------------------------------u   -      A   CG     C   A      cuca 
                                    gcu gccaca ACC  UAGAU CGA CUUGUg    u
                                    ||| |||||| |||  ||||| ||| ||||||    a
                                    cgg cgguGU UGG  AUCUA GUU GAACAc    u
ccccuucacgucgucguggggccccacgagaacggu   u      C   AU     U   C      accu 

>tgu-mir-221 (-26.00)   [tgu-miR-221:41-63]

-------------   ug   u         auuu    -   u 
             acc  gca acaauguag    cugu guu g
             |||  ||| |||||||||    |||| ||| u
             UGG  CGU UGUUACAUC    GAca cga u
guccgucgacCUU   GU   C         ----    a   a 

>tgu-mir-128-2 (-49.80)   [tgu-miR-128*:11-29] [tgu-miR-128:67-87]

----     c  cg   CCCGU     U             uua      aa    g gag 
    guggc gu  GAC     GCGGC GGAAGgggggccg   cacugu  gaga u   u
    ||||| ||  |||     ||||| |||||||||||||   ||||||  |||| |    
    caccg ca  cug     ugucg ccuUUUCUCUGGC   GUGACA  CUcu g   a
gccu     -  --   -----     u             CAA      --    g acg 

>tgu-mir-128-1 (-25.10)   [tgu-miR-128:41-61]

-------   uuc       uaa      cu       u 
       gga   ggggccg   cacugu  gagaggu u
       |||   |||||||   ||||||  |||||||  
       cuu   CUCUGGC   GUGACA  CUcuuua a
ucgucga   UUU       CAA      --       c 

>tgu-mir-222-1 (-28.40)   [tgu-miR-222:41-64]

-----------uc             -     auu   ucuu 
             gcucaguagucag uguag   cug    u
             ||||||||||||| |||||   |||     
             UGGGUCAUCGGUC ACAUC   gac    a
cuacaguaguCUC             U     GAc   uaac 

>tgu-mir-222-2 (-28.40)   [tgu-miR-222:41-64]

-----------uc             -     auu   ucuu 
             gcucaguagucag uguag   cug    u
             ||||||||||||| |||||   |||     
             UGGGUCAUCGGUC ACAUC   gac    a
cuacaguaguCUC             U     GAc   uaac 

>tgu-mir-138-1 (-33.20)   [tgu-miR-138:11-33]

gcugugcaacAG             UCA      - a  a 
            CUGGUGUUGUGAA   GGCCGu c cc g
            |||||||||||||   |||||| | ||  
            gaccacaacacuu   ucggca g gg u
-------gcugg             -ca      a a  c 

>tgu-mir-138-2 (-30.35)   [tgu-miR-138:11-33]

-------u  u   u  AG       U     UCA     acgacaagcg 
        ug ugc gc  CUGGUGU GUGAA   GGCCG          c
        || ||| ||  ||||||| |||||   |||||           
        ac acg ug  gaccaca cacuu   ucggc          u
cucaccau  u   u  -g       u     -ua     cuaacauccu 

>tgu-mir-26-1 (-25.50)   [tgu-miR-26:11-32]

uguggccu   U         C         -U  aucc 
        ggU CAAGUAAUC AGGAUAGGC  gu    a
        ||| ||||||||| |||||||||  ||     
        uca guucauugg ucuuauccg  ca    u
-------g   c         u         cu  aucu 

>tgu-mir-26-2 (-25.50)   [tgu-miR-26:11-32]

uguggccu   U         C         -U  aucc 
        ggU CAAGUAAUC AGGAUAGGC  gu    a
        ||| ||||||||| |||||||||  ||     
        uca guucauugg ucuuauccg  ca    u
-------g   c         u         cu  aucu 

>tgu-mir-19b-1 (-26.60)   [tgu-miR-19b:41-63]

----------           -  -      uc    --u     
          uuaguuuugca gg uuugca  cagc   guau 
          ||||||||||| || ||||||  ||||   ||| g
          AGUCAAAACGU CC AAACGU  GUcg   caua 
ugacgguguc           A  U      --    ucu     

>tgu-mir-19b-2 (-31.20)   [tgu-miR-19b:41-63]

---------            -  -      ucc    uuac 
         gucaguuuugca gg uuugca   cagc    u
         |||||||||||| || ||||||   ||||    a
         cAGUCAAAACGU CC AAACGU   GUcg    a
ugguggugu            A  U      ---    uuaa 

>tgu-let-7e (-35.70)   [tgu-let-7e:11-32]

----     g   cU   GU         A      -  --    ucu  u 
    uccuu agg  GAG  AGUAGAUUG AUAGUU gu  ggag   gg c
    ||||| |||  |||  ||||||||| |||||| ||  ||||   ||  
    aggaa ucc  uuc  ucaucuaac uaucaa cg  ucuc   cc c
acag     -   -u   ug         a      u  ag    ---  u 

>tgu-let-7a-1 (-40.40)   [tgu-let-7a:11-32]

--  -   ug   U   GU                ---------u        
  uc cuu  ggg GAG  AGUAGGUUGUAUAGUU          uagggcu 
  || |||  ||| |||  ||||||||||||||||          |||||| a
  gg gaa  ccu uuc  ucaucuaacauaucaa          gucccgu 
uc  u   gu   -   ug                uagacugucc        

>tgu-let-7a-3 (-26.20)   [tgu-let-7a:61-82]

--     gucuu     aa     aauc     c  g   uga  a  c 
  gacuu     gacug  gcagc    cugcc ca cuc   ag ug c
  |||||     |||||  |||||    ||||| || |||   || ||  
  cuggg     UUGAU  UGUUG    GAUGG GU ggg   uc ac u
ua     --auu     -A     -GAU     A  a   -ug  -  g 

>tgu-let-7a-2 (-34.90)   [tgu-let-7a:11-32] [tgu-let-7a*:56-76]

----   ---      uU   G   U             uagaa ua a 
    gca   uccagg  GAG UAG AGGUUGUAUAGUU     u  c c
    |||   ||||||  ||| ||| |||||||||||||     |  | c
    cgu   ggguuc  UUC AUC UCCAACAUGUCaa     a  g a
caca   ucu      CU   G   C             --uag gg a 

>tgu-let-7a-4 (-39.10)   [tgu-let-7a:11-32]

ucugug    U          GU         ---ugg  gg -       
      gagg GAGGUAGUAG  UGUAUAGUU      ug  a gggauu 
      |||| ||||||||||  |||||||||      ||  | ||||| u
      uucc uuccguuauc  acauaucaa      ac  u cccuag 
----aa    -          ug         uagugg  uu a       

>tgu-let-7c-1 (-35.20)   [tgu-let-7c:11-32]

--------  a      uU   G   U             ua  g ua a 
        gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
        || ||||||  ||| ||| |||||||||||||  || |  | c
        cg agguuc  uuc auc uccaacaugucaa  uu a  g c
aguucaca  -      cu   g   u             --  g gg u 

>tgu-let-7c-2 (-35.20)   [tgu-let-7c:11-32]

--------  a      uU   G   U             ua  g ua a 
        gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
        || ||||||  ||| ||| |||||||||||||  || |  | c
        cg agguuc  uuc auc uccaacaugucaa  uu a  g c
aguucaca  -      cu   g   u             --  g gg u 

>tgu-mir-30c (-26.10)   [tgu-miR-30c-5p:1-24] [tgu-miR-30c-3p:41-62]

------------U       U   ACA         ----gu g 
             GUAAACA CCU   CUCUCAGCU      g a
             ||||||| |||   |||||||||      |  
             CAUUUGU GGA   GAGGGUCga      c a
guuccgucucUCU       C   --A         aagaau a 

>tgu-mir-218-1 (-43.85)   [tgu-miR-218:11-31]

-----------------------------a   u      U         CU        gguugugag 
                              gau uucugU GUGCUUGAU  AACCAUGU         g
                              ||| |||||| |||||||||  ||||||||          
                              cug aaggua cacgaacug  uugguaca         u
ucgucgaacgguacgacaucuuucgacgca   c      c         uc        aaaugagua 

>tgu-mir-218-2 (-51.60)   [tgu-miR-218:11-31]

-------------------------------------------------ggguu    uUU         CU        ------g   ga 
                                                      uucc   GUGCUUGAU  AACCAUGU       gua  a
                                                      ||||   |||||||||  ||||||||       |||   
                                                      aagg   cacgaacug  uugguaca       cau  c
gaagacggggucgucuucauagguccguacgguacgacgucccucauacgucgg    uac         uc        agguaaa   aa 

>tgu-mir-103-1 (-43.50)   [tgu-miR-103:81-103]

gggcugaagaugaaaggcacaucugucaugucuuac       --    u  u           c   u g a 
                                    ugccuuc  ggcu cu uacagugcugc uug u c u
                                    |||||||  |||| || ||||||||||| ||| | |  
                                    acggaAG  UCGG GA AUGUUACGACG Aac a g a
-------------------------------gaguu       UA    -  C           -   u g u 

>tgu-mir-103-2 (-24.20)   [tgu-miR-103:41-63]

-----------uuc    u  u           c   uu   u 
              agcu cu uacagugcugc uug  gca u
              |||| || ||||||||||| |||  |||  
              UCGG GA AUGUUACGACG Aac  ugu c
gagacgagaaAGUA    -  C           -   --   a 

>tgu-mir-103-3 (-43.50)   [tgu-miR-103:81-103]

gggcugaagaugaaaggcacaucugucaugucuuac       --    u  u           c   u g a 
                                    ugccuuc  ggcu cu uacagugcugc uug u c u
                                    |||||||  |||| || ||||||||||| ||| | |  
                                    acggaAG  UCGG GA AUGUUACGACG Aac a g a
-------------------------------gaguu       UA    -  C           -   u g u 

>tgu-mir-99-1 (-29.40)   [tgu-miR-99:11-31] [tgu-miR-99*:48-68]

aauugg    A         UC   U       ugaa 
      caua ACCCGUAGA  CGA CUUGUgu    a
      |||| |||||||||  ||| |||||||    c
      gugU UGGGUAUCU  GCU GAACacg    g
------    C         UC   C       ucac 

>tgu-mir-99-2 (-29.40)   [tgu-miR-99:11-31] [tgu-miR-99*:48-68]

aauugg    A         UC   U       ugaa 
      caua ACCCGUAGA  CGA CUUGUgu    a
      |||| |||||||||  ||| |||||||    c
      gugU UGGGUAUCU  GCU GAACacg    g
------    C         UC   C       ucac 

>tgu-mir-2989-1 (-32.91)   [tgu-miR-2989:11-30]

-----ca          A  U    AGAACUC        -ggga     g 
       uaugcucaGC CG GAUG       UGUuggua     caucu a
       |||||||||| || ||||       ||||||||     |||||  
       gugcgggucg gu cuau       gcaaccgu     guggg g
ucauaag          a  -    -------        aagua     a 

>tgu-mir-2989-2 (-32.91)   [tgu-miR-2989:11-30]

-----ca          A  U    AGAACUC        -ggga     g 
       uaugcucaGC CG GAUG       UGUuggua     caucu a
       |||||||||| || ||||       ||||||||     |||||  
       gugcgggucg gu cuau       gcaaccgu     guggg g
ucguaag          a  -    -------        aagua     a 

>tgu-mir-1559 (-45.90)   [tgu-miR-1559:101-122]

----ca  aa     -cc  g   -   ca    a  ----     -  u   ca aa         ----  u 
      cc  gggag   ca gca gca  gaga gg    uggau uc gca  c  acacucggc    gc g
      ||  |||||   || ||| |||  |||| ||    ||||| || |||  |  |||||||||    ||  
      gg  cCCUC   GU UGU CGU  CUUu cc    aucug ag cgu  g  ugugagccg    cg u
ccguaa  -a     AUC  A   U   AG    -  ucag     g  u   ag -g         gugc  a 

>tgu-mir-21 (-31.70)   [tgu-miR-21:11-32] [tgu-miR-21*:50-71]

uccugu             A     A     A    ugg 
      cggaUAGCUUAUC GACUG UGUUG cugu   a
      ||||||||||||| ||||| ||||| ||||    
      gUCUGUCGGAUGG CUGAC ACAAc ggua   u
------             -     A     -    cuc 

>tgu-let-7g-1 (-46.20)   [tgu-let-7g:11-32]

gauu      U        A            ugagg    -a  a    a 
    ccaggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
    |||||| |||||||| ||||||||||||     ||||  || ||||  
    gguccg uuccguca cggacaugucaa     uaga  ac augg c
----      -        c            -----    gg  -    c 

>tgu-let-7g-2 (-46.20)   [tgu-let-7g:11-32]

gauu      U        A            ugagg    -a  a    a 
    ccaggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
    |||||| |||||||| ||||||||||||     ||||  || ||||  
    gguccg uuccguca cggacaugucaa     uaga  ac augg c
----      -        c            -----    gg  -    c 

>tgu-mir-122 (-34.00)   [tgu-miR-122:11-32]

ccca       GG       C           uguc 
    gagcugU  AGUGUGA AAUGGUGUUUG    c
    |||||||  ||||||| |||||||||||    a
    cuugaua  ucacacu uuaccgcaaac    u
---c       aa       a           uauc 

>tgu-let-7f (-44.30)   [tgu-let-7f:11-32]

ucug    a UG                      ---------       u 
    ucag g  AGGUAGUAGAUUGUAUAGUUgu         aggguag u
    |||| |  ||||||||||||||||||||||         ||||||| a
    aguc c  uccguuaucuaacauaucaaua         ucccauu u
---g    - cu                      gaggacuug       u 

>tgu-mir-383 (-26.10)   [tgu-miR-383:11-32]

ccugcuccucA      AA    A        --    gu 
           GAUCAG  GGUG UUGUGGCU  uuga  a
           ||||||  |||| ||||||||  ||||  a
           cugguc  ucac gacaccga  aauu  a
--------aga      cg    -        cg    au 

>tgu-mir-29a-1 (-24.40)   [tgu-miR-29a:41-61]

---------           uuu       c    ucaa 
         ugacugauuuc   ugguguu agag    u
         |||||||||||   ||||||| ||||    a
         aUUGGCUAAAG   ACCACGA Ucuu    a
guuagugau           UUU       -    uaau 

>tgu-mir-29a-2 (-25.60)   [tgu-miR-29a:41-61]

---------           ucu       ---     uc 
         ugaccgauuuc   ugguguu   cagag  u
         |||||||||||   |||||||   |||||  c
         aUUGGCUAAAG   ACCACGA   guuuu  a
ggauguagu           UUU       Ucu     ug 

>tgu-mir-451 (-40.70)   [tgu-miR-451:11-33]

--------------gccggcgg    A              GA 
                      ggAA CCGUUACCAUUACU  G
                      |||| ||||||||||||||   
                      ucuu ggcaaugguaauga  U
acggcggaacggccggcagccg    -              UU 

>tgu-mir-27 (-44.40)   [tgu-miR-27:61-81]

aucu    gg g                  auug        u  uug 
    cucu  c aggugcagagcuuagcug    gugaacag ga   u
    ||||  | ||||||||||||||||||    |||||||| ||   u
    gaga  g uccaCGUCUUGAAUCGGU    CACUUguu cu   u
----    -a -                  --GA        u  ccu 

>tgu-mir-30a (-44.36)   [tgu-miR-30a-5p:20-43] [tgu-miR-30a-3p:61-82]

uuggg      ag   cu            UU           ggaagg 
     gcaguc  ugc  cUGUAAACAUCC  GACUGGAAGCU      g
     ||||||  |||  ||||||||||||  |||||||||||      c
     cgucgg  acg  GACAUUUGUAGG  CUGACUUUCga      u
-----      --   aC            --           ggaagg 

>tgu-let-7d (-43.11)   [tgu-let-7d:11-32]

  u       A              C      -------  a      g 
gc ccuagga GAGGUAGUAGGUUG AUAGUU       uu gggcag g
|| ||||||| |||||||||||||| ||||||       || |||||| a
cg ggauucu uuccgucguccaac uaucaa       ag cucguu u
  -       -              a      uggagga  a      u 

>tgu-mir-34b (-25.80)   [tgu-miR-34b:41-63]

aaaauuug   ug aa    --    cau a        
        ggg  a  ggcu  cugc   c gccuggu 
        |||  |  ||||  ||||   | |||||| u
        ccC  U  UCGA  GAUG   G CGGAccg 
caacgaaa   GU AG    UU    --U A        

>tgu-mir-33 (-30.60)   [tgu-miR-33:11-30]

ggcagcuguaG          UU         -  ug g 
           UGCAUUGUAG  GCAUUGCau gu  u g
           ||||||||||  ||||||||| ||  |  
           acgugacguc  uguaacgug ca  g c
---------ug          uu         u  gu a 

>tgu-mir-24 (-47.10)   [tgu-miR-24:101-122]

ccagucggaaacaacuuacagcugcugcuguuguuccaggcuguugau  a c  uc    g  g   a         ua     uc  au 
                                                gg c cg  cucc gu ccu cugagcuga  ucagu  ug  u
                                                || | ||  |||| || ||| |||||||||  |||||  ||   
                                                cc g gc  gagG CA GGA GACUUGACU  GGUca  ac  u
------------------------------------------------  - a  -u    A  A   C         -C     -c  au 

>tgu-mir-551 (-26.90)   [tgu-miR-551*:1-21] [tgu-miR-551:41-61]

------------         GG     AAGA   ggu   c 
            GAAAUCAAG  UGGGU    Ccu   gag a
            |||||||||  |||||    |||   |||  
            CUUUGGUUC  ACCCA    Gga   cuc a
gggugucgggGA         AU     --GC   -au   a 

>tgu-mir-338 (-27.20)   [tgu-miR-338:41-62]

--------       cu   -         uca    aagu 
        agcaaca  auc cugaugcug   gagu    g
        |||||||  ||| |||||||||   ||||     
        uuGUUGU  UAG GACUACGAC   CUcg    g
aaugguga       UU   U         ---    aaau 

>tgu-mir-137 (-26.60)   [tgu-miR-137:41-63]

--------  ug   g           ug a     -  g 
        gg  acg guauucuuggg  g uaaua cg a
        ||  ||| |||||||||||  | ||||| || u
        cu  UGC CAUAAGAAUUC  U AUUgu gc u
gagaggag  GA   G           GU -     u  a 

>tgu-mir-126 (-65.40)   [tgu-miR-126*:64-83] [tgu-miR-126:101-122]

auccucguuccugcagggcgggucuggagccacgaggagcggcgggcgccgcu   g     c           U       C cug   c 
                                                     ggu acggc CAUUAUUACUU UGGUACG g   uga a
                                                     ||| ||||| ||||||||||| ||||||| |   |||  
                                                     ccg ugucG GUAAUAAUGAG GCCAUGC c   acu c
---------------------------------------------------ga   g     C           U       U -aa   u 

>tgu-mir-200a (-37.04)   [tgu-miR-200a*:23-43] [tgu-miR-200a:61-83]

ggacuugcugguccu  g        -             C    uuugcu 
               cu ugggCAUC UUACUAGACAGUG UGGa      g
               || |||||||| ||||||||||||| ||||       
               ga auUUGUAG AAUGGUCUGUCAC AUcu      c
----------agugg  a        C             A    caucuc 

>tgu-mir-181a-1 (-21.20)   [tgu-miR-181a:11-33] [tgu-miR-181a*:51-72]

ugcuucagugA   U      CU       A    gga  u 
           ACA UCAACG  GUCGGUG GUuu   au a
           ||| ||||||  ||||||| ||||   ||  
           UGU AGUUGC  CAGCUAC CAaa   ug a
-------cCCA   U      --       -    -ag  a 

>tgu-mir-181a-2 (-20.50)   [tgu-miR-181a:11-33]

agcuucagugA   U      CU       A    gagaa 
           ACA UCAACG  GUCGGUG GUuu     c
           ||| ||||||  ||||||| ||||      
           ugu aguugc  cagcuac caaa     u
------uucca   c      --       -    aaaga 

>tgu-mir-2991 (-18.80)   [tgu-miR-2991:41-59]

-----uaga  ug  ca     uc    c  ag  c 
         gg  ac  gcugc  ugca ca  gc c
         ||  ||  |||||  |||| ||  ||  
         uC  UG  UGAUG  AUGU gu  cg u
cuacaaaug  GU  UC     CU    A  ga  u 

>tgu-mir-490-1 (-36.93)   [tgu-miR-490:61-83]

ucaugaguucaugc       c      --         g   caagaua 
              uucgaca caugga  ucuccaggu ggu       a
              ||||||| ||||||  ||||||||| |||       u
              gagcUGU GUACCU  GGAGGUCCA Cca       a
--------cuuguc       C      CA         A   cauagag 

>tgu-mir-490-2 (-37.90)   [tgu-miR-490:61-83]

ucaugaguucaugc       c      --         g   caag   a 
              uucgaca caugga  ucuccaggu ggu    auu u
              ||||||| ||||||  ||||||||| |||    ||| a
              gagcUGU GUACCU  GGAGGUCCA Cca    uag g
--------cuuguc       C      CA         A   --ca   a 

>tgu-mir-2992 (-41.90)   [tgu-miR-2992:11-31]

ggcggcagggC                 -U     u g g 
           CCCGGCAGGACAAAGUC  CUcug g a g
           |||||||||||||||||  ||||| | |  
           gggccguccuguuucgg  gagac c u g
----------c                 cc     u g c 

>tgu-mir-2993 (-24.50)   [tgu-miR-2993:11-28]

guagcugga     CU       A   -    cauu 
         uCCGG  GUGGAGA GGA Ggug    c
         |||||  ||||||| ||| ||||     
         gggcu  uaccucu ccu ccgc    a
----caaga     cc       -   a    cccc 

>tgu-mir-2994 (-43.70)   [tgu-miR-2994:11-32]

gggugu    C  C         -   G      --  aa 
      ggag GU GGGCUGAUC CCC CUGCGg  gc  a
      |||| || ||||||||| ||| ||||||  ||   
      ccuc ca cccgacugg ggg ggcgcc  cg  g
------    a  c         a   -      ac  cc 

>tgu-mir-153-1 (-26.60)   [tgu-miR-153:41-62]

----------u              gu       -a  aa 
           gucauuuuugugau  ugcagcu  gu  u
           ||||||||||||||  |||||||  ||  a
           UAGUGAAAACACUG  ACGUUga  cg  u
ucaaagguuaC              AU       cc  ag 

>tgu-mir-153-2 (-28.80)   [tgu-miR-153:41-62]

--------   -              -       --   aa 
        gcg ucauuuuugugauu ugcagcu  agu  u
        ||| |||||||||||||| |||||||  |||   
        ugC AGUGAAAACACUGA ACGUUga  ucg  c
ccgacggu   U              U       cc   gu 

>tgu-mir-20a (-29.90)   [tgu-miR-20a:11-33]

cuug   c   -A                 ----G    g 
    uag acU  AAGUGCUUAUAGUGCAG     UAGu u
    ||| |||  |||||||||||||||||     ||||  
    guc uga  uucacgaauauuacguc     auca u
----   a   aa                 aucua    c 

>tgu-mir-142 (-27.50)   [tgu-miR-142:9-28]

ugcagucaC           A         u aa a    
         CCAUAAAGUAG AAGCACUac a  c gca 
         ||||||||||| ||||||||| |  | || c
         gguauuucauc uuugugaug u  g cgu 
-------ua           c         - gg a    

>tgu-mir-15a (-26.00)   [tgu-miR-15a:11-31]

uggcauaac UA        UA         gggu   g 
         g  GCAGCACA  AUGGUUUGU    uuu a
         |  ||||||||  |||||||||    |||  
         c  cgucgugu  uaccggacg    gga a
------aaa uc        ua         ---u   a 

>tgu-mir-107 (-22.40)   [tgu-miR-107:41-63]

-----------uuc    u  u           c   u   a 
              agcu cu uacaguguugc uug ggc u
              |||| || ||||||||||| ||| ||| g
              UCGG GA AUGUUACGACG Aac uug g
gagguacgaaACUA    -  C           -   -   a 

>tgu-mir-140 (-34.20)   [tgu-miR-140:11-32] [tgu-miR-140*:50-72]

cgu    ugcCA             A       uu   uc 
   gucc     GUGGUUUUACCCU UGGUAGg  acg  a
   ||||     ||||||||||||| |||||||  |||   
   CAGG     CACCAAGAUGGGA ACCAUcu  ugu  u
---    -----             C       --   cg 

>tgu-mir-194-1 (-28.50)   [tgu-miR-194:11-32]

ug  c   uaU         A      G    cuac 
  cu uca   GUAACAGCA CUCCAU UGGA    a
  || |||   ||||||||| |||||| ||||    c
  gg agu   cauugucgu gaggug accu    u
--  u   uuu         a      -    ucag 

>tgu-mir-194-2 (-28.50)   [tgu-miR-194:11-32]

ug  c   uaU         A      G    cuac 
  cu uca   GUAACAGCA CUCCAU UGGA    a
  || |||   ||||||||| |||||| ||||    c
  gg agu   cauugucgu gaggug accu    u
--  u   uuu         a      -    ucag 

>tgu-mir-135a-1 (-29.30)   [tgu-miR-135a:11-33] [tgu-miR-135a*:50-69]

ucuag               U            u g a 
     uguuuUAUGGCUUUU AUUCCUAUGUGA a u a
     ||||||||||||||| |||||||||||| | | u
     auaaAGUACCGAAGG UAGGGAUGUacu u a a
-----               -            c g a 

>tgu-mir-135b (-30.34)   [tgu-miR-135b:11-33]

ugccguc            UU            uuauac 
       uugUAUGGCUUU  AUUCCUAUGUGA      a
       ||||||||||||  ||||||||||||       
       gacgugccgaag  uagggauauacu      u
------u            -u            ucaccc 

>tgu-mir-184 (-51.50)   [tgu-miR-184:81-102]

cccgcggcuccccgccggucuccugaggcc    u  ug         c      a c     -u  ugc 
                              gcuc cg  cccuuauca uuuucc g ccagc  uc   a
                              |||| ||  ||||||||| |||||| | |||||  ||    
                              ugag gc  GGGAAUAGU AAGAGG C GGUug  ag   c
----------------------------ag    c  gU         C      - A     uc  ucu 

>tgu-mir-1-2 (-20.74)   [tgu-miR-1:41-62]

-----------c                ac     ugaaca 
            acauacuucuuuaugu  ccaua      u
            ||||||||||||||||  |||||       
            UGUAUGAAGAAAUGUA  GGUau      a
ggacgguuuuUA                -A     cguaac 

>tgu-mir-1-1 (-23.44)   [tgu-miR-1:41-62]

-----------g                gc     ugaacc 
            acauacuucuuuauau  ccaua      u
            ||||||||||||||||  |||||       
            UGUAUGAAGAAAUGUA  GGUau      g
ggguggacuuUA                -A     cgaacg 

>tgu-mir-181b-1 (-24.00)   [tgu-miR-181b:11-34]

ggucacaaugAA         CUG           aa  a 
            CAUUCAUUG   UCGGUGGGUUu  cu u
            |||||||||   |||||||||||  ||  
            guaaguaac   agucacucgaa  gg g
------gucaac         --a           ca  u 

>tgu-mir-181b-2 (-24.70)   [tgu-miR-181b:11-34]

ggcu   aucAA         CU           uucau 
    gca     CAUUCAUUG  GUCGGUGGGUU     u
    |||     |||||||||  |||||||||||      
    cgu     guaaguaac  cagucacucaa     u
----   caaac         --           cuauc 

>tgu-mir-17a (-22.30)   [tgu-miR-17a:41-62]

---------  -ca        a  g     gua  gaua 
         gu   aagugcuu ca ugcag   gu    u
         ||   |||||||| || |||||   ||     
         cG   UUCACGGA GU ACGUC   ca    a
guuguauua  AUG        A  G     Auc  agau 

>tgu-mir-202-1 (-29.70)   [tgu-miR-202:41-60]

------cu           -a           g    u 
        uuuuccuaugc  uauacuucuuu agaa u
        |||||||||||  ||||||||||| ||||  
        aaAAGGGUACG  AUAUGGAGAaa ucuu g
aacggggu           GG           -    c 

>tgu-mir-202-2 (-29.70)   [tgu-miR-202:41-60]

------cu           -a           g    u 
        uuuuccuaugc  uauacuucuuu agaa u
        |||||||||||  ||||||||||| ||||  
        aaAAGGGUACG  AUAUGGAGAaa ucuu g
aacggggu           GG           -    c 

>tgu-mir-23 (-22.54)   [tgu-miR-23*:3-23] [tgu-miR-23:41-61]

-------uu   --          -  A      gugacu 
         UGG  GUUCCUGGCA UG UGAUUu      u
         |||  |||||||||| || ||||||       
         aCC  UAGGGACCGU AC ACUAaa      a
uaccgacgc   AU          U  -      auuaga 

>tgu-mir-187 (-35.60)   [tgu-miR-187:41-60]

------   c    a                a c  u 
      cuc ggcu caacacaggacauggg g uu u
      ||| |||| |||||||||||||||| | ||  
      gag CCGA GUUGUGUUCUGUGCUc c ag c
cacggg   a    C                c a  u 

>tgu-mir-219 (-28.60)   [tgu-miR-219:11-32]

ucuccgcuccUGAU      A            -ug  -   g 
              UGUCCA ACGCAAUUCUUg   cg aug a
              |||||| ||||||||||||   || |||  
              acaggu uguguuaagaac   gc ugc g
--------------      c            caa  a   c 

>tgu-mir-2995 (-21.10)   [tgu-miR-2995:11-31]

uugccuuugu        -UUC U         a   ca 
          UGGCACUG    G AACCUGUUa cag  c
          ||||||||    | ||||||||| |||  c
          aucgugac    c uuggguaau guc  u
---------c        cuua c         c   cu 

>tgu-mir-204-1 (-30.26)   [tgu-miR-204:11-32]

acccgu    U          AU    U    gagaau 
      ggac UCCCUUUGUC  CCUA GCCU      a
      |||| ||||||||||  |||| ||||      u
      cuug agggaaacgg  gggu cggg      a
------    c          ag    -    ggaagu 

>tgu-mir-204-2 (-33.70)   [tgu-miR-204:11-32]

accug     U         CA    A     g aga 
     ugggc UCCCUUUGU  UCCU UGCCU g   u
     ||||| |||||||||  |||| ||||| |   c
     acucg agggaaacg  aggg acgga u   a
----g     u         ac    -     g gac 

>tgu-mir-204-3 (-44.00)   [tgu-miR-204:11-32]

----------------cccu   a         U   A     U    --ga    
                    gug gcUUCCCUU GUC UCCUA GCCU    gcg 
                    ||| ||||||||| ||| ||||| ||||    || a
                    cac cggagggaa cgg agggu cgga    cgu 
ccccgacacccaccgucggg   c         c   c     -    gguc    

>tgu-mir-204-4 (-44.00)   [tgu-miR-204:11-32]

----------------cccu   a         U   A     U    --ga    
                    gug gcUUCCCUU GUC UCCUA GCCU    gcg 
                    ||| ||||||||| ||| ||||| ||||    || a
                    cac cggagggaa cgg agggu cgga    cgu 
ccccgacacccaccgucggg   c         c   c     -    gguc    

>tgu-mir-133-1 (-23.00)   [tgu-miR-133:41-61]

-------uaa       aa  u  a        accuc 
          agcuggu  aa gg accaaauc     u
          |||||||  || || ||||||||      
          UCGACCA  UU CC UGGUUUag     u
cguaucgaug       AC  C  C        guaac 

>tgu-mir-133-2 (-27.10)   [tgu-miR-133:41-61]

--------c        ca  c  a        cg   u 
         uggcuggu  aa gg accaagcc  ucu c
         ||||||||  || || ||||||||  ||| c
         aUCGACCA  UU CC UGGUUUgg  agg u
ugugacgau        AC  C  C        --   c 

>tgu-mir-133-3 (-23.00)   [tgu-miR-133:41-61]

-------uaa       aa  u  a        aacug 
          agcuggu  aa gg accaaauc     u
          |||||||  || || ||||||||      
          UCGACCA  UU CC UGGUUUag     u
cgugucgaug       AC  C  C        guaac 

>tgu-mir-375 (-27.30)   [tgu-miR-375:41-62]

--------       u      cc   u    u  c ga 
        ccuggcg cgagcc  acg gcaa ac u  c
        ||||||| ||||||  ||| |||| || |  c
        ggAUUGC GCUCGG  UGC UGUU ug a  u
accuggac       -      CU   U    U  c ag 

>tgu-mir-130a (-25.20)   [tgu-miR-130a:41-62]

---------aga        uc         a  g -  a 
            gcccuuuu  uguuguacu cu g ca u
            ||||||||  ||||||||| || | ||  
            CGGGAAAA  AUAACGUGA ga u gu u
gacggucgguUA        UU         C  g a  a 

>tgu-mir-92-1 (-34.50)   [tgu-miR-92:41-62]

---------c            c   u       ug gug 
          acagguugggau agu gcaaugc  u   u
          |||||||||||| ||| |||||||  |    
          UGUCCGGCCCUG UCA CGUUAUg  g   g
ugguuggagu            U   -       gu ucu 

>tgu-mir-92-2 (-41.90)   [tgu-miR-92:61-82]

ccuugcacuga             g     uu  u   u     gua  u 
           uuucuccaugggu gggau  gu gca uacuu   gc g
           ||||||||||||| |||||  || ||| |||||   || u
           aaggaggUGUCCG CCCUG  CA CGU AUgag   ug a
--------gga             G     UU  -   U     --a  u 

>tgu-mir-199-1 (-24.60)   [tgu-miR-199-5p:2-23] [tgu-miR-199-3p:41-61]

------   ----      U        C   U   gacu 
      gCC    CAGUGU CAGACUAC UGU cag    a
      |||    |||||| |||||||| ||| |||     
      cgg    GUUACA GUCUGAUG ACA guu    c
ucgugu   aUUG      C        -   u   agag 

>tgu-mir-216a (-35.20)   [tgu-miR-216a:11-32]

ugaguug  u            G          -c   u 
       gc UAAUCUCAGCUG CAACUGUGAg  agu a
       || |||||||||||| ||||||||||  ||| a
       cg auuagggucgau guugacacuc  uca u
-------  u            -          uc   a 

>tgu-mir-215 (-15.80)   [tgu-miR-215:11-31]

guccaggaaaA  A     -   U      A ---   c 
           UG CCUAU GAA UGACAG C   ugu u
           || ||||| ||| |||||| |   ||| u
           ac ggaua cuu acuguc g   acg u
------uuaua  c     u   c      c uuu   u 

>tgu-mir-130b (-57.60)   [tgu-miR-130b*:62-83] [tgu-miR-130b:101-122]

cccccagcccggcagccgccgcagcugcugugccagcgcugggaccaccggccgggcugccCCU     CC         A  -  ca g 
                                                                CUUUC  UGUUGCACU CU gu  c g
                                                                |||||  ||||||||| || ||  |  
                                                                GAAAG  AUAACGUGA ga cg  g u
-------------------------------------------------gccgcgugacUGCGG     UA         C  g  ac c 

>tgu-mir-217 (-24.04)   [tgu-miR-217:10-31]

auguc    AUAC     C          U  auaaua 
     gcag    UGCAU AGGAACUGAU Gg      a
     ||||    ||||| |||||||||| ||       
     cguu    acgua uccuugacua cc      u
acuuc    ----     a          -  acucac 

>tgu-mir-454 (-29.30)   [tgu-miR-454:41-63]

---------        ---         -  -       ug 
         gacccuau   caauauugc cu cugcuuu  u
         ||||||||   ||||||||| || |||||||  g
         cUGGGAUA   GUUAUAACG GA gauggga  a
uuuucuuuu        UUC         U  U       cu 

>tgu-mir-130c (-48.10)   [tgu-miR-130c:81-102]

uccugcaccuccucugucccugaguggugu   u             u          a  ---g   au 
                              cug ccagugcccuuuu auguuguacu cu    gug  g
                              ||| ||||||||||||| |||||||||| ||    |||   
                              gac gguUACGGGAAAA UGUAACGUGA ga    cac  a
---------------------------aac   c             U          C  aaaa   gu 

>tgu-mir-365-1 (-28.80)   [tgu-miR-365:41-62]

------------     c           ----   -    uu 
            aggga uuuugggggca    gau gugu  c
            ||||| |||||||||||    ||| ||||  c
            UUCCU AAAAUCCCCGU    cua caca  a
acguucucguUA     A           AAUa   u    uu 

>tgu-mir-365-2 (-45.30)   [tgu-miR-365:81-102]

ugcccuccuggggaccgacugagcggca       a        ac   c       -----    u   u 
                            gcaagaa aaugaggg  uuu aggggca     gcug guu u
                            ||||||| ||||||||  ||| |||||||     |||| ||| a
                            cguucuu uUAUUCCU  AAA UCCCCGU     ugac caa c
---------------------------a       g        AA   -       AAUac    c   u 

>tgu-mir-16a (-34.89)   [tgu-miR-16a:11-32] [tgu-miR-16a*:51-72]

-----------u   a              -  A        U uuaagac 
            guc uacuuUAGCAGCAC GU AAUAUUGG G       u
            ||| |||||||||||||| || |||||||| |        
            cgg augaAGUCGUCGUG CA UUAUGACC c       g
gucuucaccgau   a              U  A        u uauaaau 

>tgu-mir-32 (-28.26)   [tgu-miR-32:11-31]

cugguggaga          U            guucuc 
          UAUUGCACAU ACUAAGUUGCac      a
          |||||||||| ||||||||||||      c
          auagcgugug ugauuuaacgug      g
---------c          -            acuccg 

>tgu-mir-193a (-25.00)   [tgu-miR-193a:41-62]

----------  u    gu    g    g  a  -----   u 
          ag cggg  uuug gggc ag ug     agc u
          || ||||  |||| |||| || ||     |||  
          UC GCCC  AAAC CCCG UC Ac     uug a
cuggugguuu  -    UG    A    G  A  cuauu   u 

>tgu-mir-16c (-27.60)   [tgu-miR-16c:11-32]

agcagugcucU       CGUA          ---uu    a 
           AGCAGCA    AAUACUGGAG     uggg u
           |||||||    ||||||||||     ||||  
           ucgucgu    uuaugaccuc     gucc u
-----------       uacg          ucguu    g 

>tgu-mir-18a (-19.30)   [tgu-miR-18a:11-32]

cuuuuuguacU    U   UC   U    A   -  aa u 
           AAGG GCA  UAG GCAG UAg ug  g a
           |||| |||  ||| |||| ||| ||  | g
           uucc cgu  auc cguc auc ac  u a
---------uc    u   ga   c    -   u  ga u 

>tgu-mir-16b (-24.80)   [tgu-miR-16b:11-32] [tgu-miR-16b*:52-72]

cguuccgcccU         UA        A u  ca   a 
           AGCAGCACG  AAUAUUGG G gu  aag a
           |||||||||  |||||||| | ||  |||  
           UCGUCGUGU  UUAUAACC C ca  uuc a
----------U         UA        - -  ac   c 

>tgu-mir-190 (-23.70)   [tgu-miR-190:11-32]

agacu    - UG               UA     uuau 
     cugu g  AUAUGUUUGAUAUAU  GGUug    u
     |||| |  |||||||||||||||  |||||     
     gaca c  uauacaaacuauaua  ucaac    u
-----    u cu               --     cuaa 

>tgu-mir-106 (-28.80)   [tgu-miR-106:11-33]

caa  u    -AA         C G     G    guu 
   gu gugc   AAGUGCUUA A UGCAG UAGa   c
   || ||||   ||||||||| | ||||| ||||    
   ca uacg   uucacgaau u acguc aucu   a
---  u    guc         u g     -    agg 

>tgu-mir-20b (-22.60)   [tgu-miR-20b:11-33]

cuagca    -CA           G     G   c  gg 
      guau   AAGUGCUCAUA UGCAG UAG uu  a
      ||||   ||||||||||| ||||| ||| ||  a
      caug   uucacgggugu auguc auc ag  a
------    aca           a     -   c  gu 

>tgu-mir-200b (-26.80)   [tgu-miR-200b*:5-25] [tgu-miR-200b:41-63]

---------  g    -    UG     C      -  auc 
         ca cAUC UUAC  GGCAG AUUGGA ug   c
         || |||| ||||  ||||| |||||| ||    
         gU GUAG AAUG  CCGUC UAAUcu gc   a
uucucggaa  A    U    GU     A      c  cgu 

>tgu-mir-216b (-24.30)   [tgu-miR-216b:11-31]

acagacug    A          C  G     ---  u  u 
        ggAA UCUCUGCAGG AA UGUGa   ug cu u
        |||| |||||||||| || |||||   || ||  
        ucuu agagaugucc uu acacu   ac ga a
--------    -          a  a     cua  -  u 

>tgu-mir-1388 (-38.20)   [tgu-miR-1388:61-82]

gccccagugaggggcac    a  a   u u         a   ---   a 
                 cucg gg cug c aaccugaga ugg   uga a
                 |||| || ||| | ||||||||| |||   |||  
                 gaGU CC GAC G UUGGACUCU acu   acu c
---------cuuccgua    A  C   U C         A   gga   a 

>tgu-mir-301 (-23.90)   [tgu-miR-301:41-63]

-------a     c    ---u          a  g a  a 
        gugcu ugac    uuauugcacu cu u cu u
        ||||| ||||    |||||||||| || | ||  
        uaCGA ACUG    GAUAACGUGA ga a ga a
cgagaguc     A    UUAU          C  g -  c 

>tgu-mir-144 (-22.10)   [tgu-miR-144*:4-26] [tgu-miR-144:41-60]

--  -a  -----        G         -A   ggc 
  gc  GG     AUAUCAUC UAUACUGUA  GUu   u
  ||  ||     |||||||| |||||||||  |||    
  cg  cc     UGUAGUAG AUAUGACAU  cag   a
gu  gg  ccUCA        -         ca   agu 

>tgu-mir-15b (-36.80)   [tgu-miR-15b:11-31]

cgaagug           C              g  cu 
       cugUAGCAGCA AUCAUGGUUUGCau cu  g
       ||||||||||| |||||||||||||| ||   
       gaugucgucgu uaguacuaaacgug ga  c
-------           u              g  cu 

>tgu-mir-34a (-25.00)   [tgu-miR-34a:11-32]

aguguuucuuUG       -   A          ---g   gc 
            GCAGUGU CUU GCUGGUUGUu    uga  a
            ||||||| ||| ||||||||||    |||  a
            cgucaua gaa cgacuaacga    acu  u
------------       u   -          agga   ga 

>tgu-mir-223 (-26.50)   [tgu-miR-223:41-61]

-----------gu              gagucc       agu 
             guauuugacaagcu      gacacuc   g
             ||||||||||||||      |||||||    
             CAUAAACUGUUUGA      CUGUgag   u
acggagugaaCCC              ------       acg 

>tgu-mir-2996-1 (-18.20)   [tgu-miR-2996:41-62]

-------agcag    gcu     a    ucuu      c 
            cagg   gaaau ucug    gggcau u
            ||||   ||||| ||||    |||||| c
            GUCU   CUUUG AGAC    UCCgua u
caaguuacaaGA    --U     G    --CU      u 

>tgu-mir-2996-2 (-18.20)   [tgu-miR-2996:41-62]

------agcagc    cu     a    ucuu      c 
            cggg  gaaau ucug    gggcau u
            ||||  ||||| ||||    |||||| c
            GUCU  CUUUG AGAC    UCCgua u
caaguuacaaGA    -U     G    --CU      u 

>tgu-mir-29b-1 (-21.82)   [tgu-miR-29b:41-61]

------------         u      gu      uuaac 
            cugguuuca auggug  uuagau     u
            ||||||||| ||||||  ||||||     a
            GACUAAAGU UACCAC  GAUcug     u
ggagguucuuGU         U      --      uuacu 

>tgu-mir-29b-2 (-21.92)   [tgu-miR-29b*:2-23] [tgu-miR-29b:41-61]

------------         C      G  U    uuucc 
            cUGGUUUCA AUGGUG CU AGAu     c
            ||||||||| |||||| || ||||     a
            GACUAAAGU UACCAC GA Ucua     c
cgaggaucuuGU         U      -  -    uguuu 

>tgu-mir-146b (-29.40)   [tgu-miR-146b:11-32] [tgu-miR-146b*:48-69]

ugcuuggcu   -          U       -    gaag 
         cUG AGAACUGAAU CCAUAGG CGuu    c
         ||| |||||||||| ||||||| ||||    c
         gaC UCUUGACUUA GGUAUCC GUaa    u
--------c   G          -       C    aacc 

>tgu-mir-214 (-53.32)   [tgu-miR-214:61-82]

gacggag          u          aca            aacau 
       uugucaugug cugccugucu   cuugcugugcag     c
       |||||||||| ||||||||||   ||||||||||||     c
       aacaguacgc GACGGACAGA   GGACGACAuguc     u
-------          U          CAC            cacuc 

>tgu-mir-2997 (-32.00)   [tgu-miR-2997*:2-23] [tgu-miR-2997:41-58]

--------cA                 CA   u    g 
          AACAUGUCCAAGUUCCU  CAg gcug c
          |||||||||||||||||  ||| ||||  
          UUGUACAGGUUCGAGGA  guc ugau a
cuuacgugga                 -C   -    g 

>tgu-mir-203 (-60.90)   [tgu-miR-203:101-122]

gcgggcggggagcgcgcccccgccccgcugcgcuccccgcggacccucag    c     gc         u    g    a     cuc 
                                                  ccuc uuggu  agugguucu aaca uuca caguu   u
                                                  |||| |||||  ||||||||| |||| |||| |||||   a
                                                  ggag gacca  UCACCAGGA UUGU AAGU Guuaa   g
--------------------------------------------------    c     GU         U    A    -     uac 

>tgu-mir-147 (-26.10)   [tgu-miR-147:41-60]

--------   ug   u           aaacuugacu    a 
        uag  gaa cauuucugcac          acug a
        |||  ||| |||||||||||          ||||  
        auC  CUU GUAAAGGCGUG          UGac a
auuuuuac   GU   C           ----------    u 

>tgu-mir-18b (-42.90)   [tgu-miR-18b:101-122]

--------------------------acuucuggcauuacuguggcgauuc      -ggu     g   cgg    aac 
                                                   cguggu    ggcag gca   acaa   c
                                                   ||||||    ||||| |||   ||||    
                                                   gcaccg    ccguc ugu   uguu   a
cgauguagugAUUGACGUGAUCUACGUGGAAUuguguuccuggaaaacguc      gauu     g   ---    agg 

>tgu-mir-193b (-30.20)   [tgu-miR-193b*:3-24] [tgu-miR-193b:41-62]

--------      U     CG   G  A    ---  g 
        gcUGGG CUUUG  GGC AG UGAg   ag u
        |||||| |||||  ||| || ||||   ||  
        UGACCC GAAAC  CCG UC acuu   uc u
ucggcucU      U     AU   G  A    cug  c 

>tgu-mir-146c (-28.40)   [tgu-miR-146c:11-32]

uucucagcuuU         A           guaau   auc 
           GAGAACUGA UUCCAUGGGUU     uga   u
           ||||||||| |||||||||||     |||    
           uucuugacu gggguacccag     acu   g
-----------         c           -----   guc 

>tgu-mir-455 (-32.90)   [tgu-miR-455*:4-25] [tgu-miR-455:41-61]

---------gg          U      A   C   gaa 
           gUAUGUGCCC UGGACU CAU Gug   g
           |||||||||| |||||| ||| |||    
           CAUAUACGGG ACCUGA GUa cac   c
aacuccguucA          U      C   c   gac 

>tgu-mir-19a (-28.40)   [tgu-miR-19a:41-60]

----                 --      u  aagaa 
    cuguuaguuuugcauag  uugcac ac     g
    |||||||||||||||||  |||||| ||      
    gguaguCGAAACGUAUC  AACGUG ug     a
cggu                 UA      U  gugag 

>tgu-mir-155 (-29.32)   [tgu-miR-155:11-31] [tgu-miR-155*:50-71]

cuguaugu            U    A        uuuac 
        ugUUAAUGCUAA CGUG UAGGGguu     c
        |||||||||||| |||| ||||||||     u
        ACAAUUACGAUU GCAC AUCCUCag     a
--------            -    -        ucagu 

>tgu-mir-30d (-31.90)   [tgu-miR-30d-5p:3-26] [tgu-miR-30d-3p:41-62]

-----------  U         CCC            uac 
           gc GUAAACAUC   GACUGGAAGCUg   c
           || |||||||||   ||||||||||||   u
           CG CGUUUGUAG   CUGACUUUcgac   g
guaucgguccA  U         --A            cuc 

>tgu-mir-460a (-24.90)   [tgu-miR-460a:11-31] [tgu-miR-460a*:47-68]

-----   -     caC UG       CACACUGUGUgugugg 
     cuu uauag   C  CAUUGUA                c
     ||| |||||   |  |||||||                 
     gaa auguc   G  GUAACAU                u
ucgcu   c     UUA GU       ACGCGACACguaaagg 

>tgu-mir-31 (-52.40)   [tgu-miR-31:25-46]

       -a      ---  u      gA     G             -U   gau 
uuccuuu  ugcaga   gc ggagag  GGCAA AUGUUGGCAUAGC  Guu   c
|||||||  ||||||   || ||||||  ||||| |||||||||||||  |||    
agggaga  gcguuu   ug ccuuuc  cuguu uacaaccguaucg  caa   u
       cg      guc  u      ua     a             uc   aaa 

>tgu-mir-205 (-30.70)   [tgu-miR-205:13-34]

     c    u CC       C   C        ---  ga 
gccuu cugg g  CUUCAUU CAC GGAAUCUG   uc  u
||||| |||| |  ||||||| ||| ||||||||   ||   
cggaa gacu c  gaaguaa gug cuuuaggc   ag  g
     a    c cc       a   a        cca  ac 

>tgu-mir-199-2 (-55.40)   [tgu-miR-199-5p:26-47] [tgu-miR-199-3p:65-85]

      ---gg  a   u  u       ---   AG       A   -  --   U    acaa     u 
gcgucc     ag ucc gc ccgucgc   CCC  UGUUCAG CUA CC  UGU cagg    ugcug u
||||||     || ||| || |||||||   |||  ||||||| ||| ||  ||| ||||    ||||| g
cgcagg     uc agg ug ggcggcg   ggg  acggguc gaU GG  ACA GUCU    AUGAC u
      gguua  -   -  c       aaa   -a       a   U  UU   C    ---G     A 

>tgu-mir-135a-2 (-44.20)   [tgu-miR-135a:15-37]

      c                  AU          uug uu 
ccucug ugugguuUAUGGCUUUUU  UCCUAUGUGA   c  u
|||||| ||||||||||||||||||  ||||||||||   |   
ggagac acaucggguaccgaaaag  gggauguacu   g  c
      -                  -c          caa cc 

>tgu-mir-489 (-43.00)   [tgu-miR-489:58-79]

u   --ac ug ug c    ug             c      ua     a 
 guc    g  g  g uugg  gucguauguauga gucauu  cuugg c
 |||    |  |  | ||||  ||||||||||||| ||||||  |||||  
 cag    c  c  c aauC  CGGCAUGUAUACU CAGUGa  ggauu u
a   ggua gu gu a    GU             A      --     u 

>tgu-mir-15c (-37.90)   [tgu-miR-15c:14-34]

        a    UA     A  UC          gggac 
cuuugagg gaug  GCAGC CA  AUGGUUUGUa     a
|||||||| ||||  ||||| ||  ||||||||||      
ggaacucc uuac  cgucg gu  uaccagacau     a
        a    uc     g  cu          agagg 

>tgu-mir-2979-2 (-40.90)   [tgu-miR-2979:14-36]

     uu   u   -C       UUU           a  ga a 
cagga  agc ggU  CAGAACC   CAAGGGACUGA gu  g c
|||||  ||| |||  |||||||   ||||||||||| ||  | u
guccu  ucg ucg  gucuugg   guuccuugacu cg  c g
     uu   u   uc       ---           c  ac a 

>tgu-mir-2980-2 (-56.80)   [tgu-miR-2980:49-68]

               uc           g        ca 
aguuuuucagcuuga  cugcuccagug uaagguuu  c
|||||||||||||||  ||||||||||| ||||||||   
ucaaaaagucgaACU  GACGAGGUCAC AUUccaaa  u
               GA           G        aa 

>bmo-mir-2998 (-22.40)   [bmo-miR-2998:1-23]

        GA  A   -  -   AA    uu    ag  g     --  a 
AAGAACAG  UG GGU AG AUA  cagg  aagg  ug cugga  ac a
||||||||  || ||| || |||  ||||  ||||  || |||||  || g
uucuuguu  ac ccg uc uau  gucu  uuuc  au ggcuu  ug g
        -a  -   a  a   aa    --    ga  g     au  a 

>bmo-mir-2999 (-31.73)   [bmo-miR-2999:12-32]

 g      -  -----    C   --G        --------------     -uu   cu   g 
c cccgcg cg     gCUG GAC   GACUAGAC              GCGCA   uuc  cgg c
| |||||| ||     |||| |||   ||||||||              |||||   |||  |||  
g gggugu gc     ugau uug   uugauuug              cgcgu   aag  guc u
 g      u  auuau    u   uua        uuuauugacuuuga     ucc   uu   g 

>bmo-mir-2733f (-39.20)   [bmo-miR-2733f:66-87]

    ---c   au   uaauc       aaaa   a        ua       a      u 
acgu    uac  ugc     ugucuau    gac guuauuac  acucggu gacacg c
||||    |||  |||     |||||||    ||| ||||||||  ||||||| ||||||  
ugca    aug  gcg     auagaua    cUG CAGUAAUG  UGGGUCA CUgugu a
    aacc   cu   --cua       guug   A        UA       -      c 

>bmo-mir-2733g (-27.31)   [bmo-miR-2733g:3-23]

     -  G  U C    A      gg  c     ucauc   -------------     c 
uaUCA CU GG G AUGA GAUUGu  ua agaga     aca             ucacg c
||||| || || | |||| ||||||  || |||||     |||             |||||  
auagu ga uc c uacu cugacg  au ucucu     ugu             agugc g
     u  g  u a    a      ua  c     cuuuc   cgaucuucucuac     c 

>bmo-mir-2733a-2 (-40.20)   [bmo-miR-2733a:5-26]

       -     U C            a        -------ucaccaca     c  cc 
uauaUCA CUGGG G AUGAUGAUUGUg uagagaga               ucacg ug  a
||||||| ||||| | |||||||||||| ||||||||               ||||| ||   
guauagu gacuc c uacuacugacgu aucucucu               agugu ac  u
       u     u a            a        cuauaucuucucuac     -  au 

>bmo-mir-2733h (-38.00)   [bmo-miR-2733h:50-70]

        au             u  g   u    -u  g 
ucucucua  gcagucaucauac cu agu gaua  gu g
||||||||  ||||||||||||| || ||| ||||  || a
agagagau  uGUUAGUAGUAUG GG UCA CUau  ua a
        gg             U  G   -    cu  a 

>bmo-mir-3000 (-39.40)   [bmo-miR-3000:35-56]

   ag     ---c     aauag     ugggucuaCU       G   -AA     U      u 
aua  guacu    guagu     ucugu          GCGCUUA AUG   GACAC Acauua g
|||  |||||    |||||     |||||          ||||||| |||   ||||| |||||| u
ugu  cguga    cguca     agaca          cgcgaau uac   uugug ugugau a
   ga     aacu     -guaa     ---------u       g   cac     u      u 

>bmo-mir-3001 (-22.40)   [bmo-miR-3001:21-46]

guaugugauuca    -   uU   U        UU   --       Auuccg   ucg 
            gaug cgu  AAG UGAAAGAA  GUA  GAUUUUG      uuu   c
            |||| |||  ||| ||||||||  |||  |||||||      |||    
            cuac gcg  uuc guuuucuu  uau  uuaagac      aaa   c
cgauuaccggaa    u   gu   u        uu   ag       gacuua   uaa 

>hma-mir-3002 (-22.20)   [hma-miR-3002:9-30]

uucu u       -       UUGU     Gag 
    g agUAGAA GAUAAGA    GGCCA   a
    | ||||||| |||||||    |||||   a
    c ucgucuu cuauucu    ucggu   u
cccu u       a       cugu     aau 

>hma-mir-3003a (-31.90)   [hma-miR-3003a-5p:16-36] [hma-miR-3003a-3p:45-66]

a  c       a         AA       C      u 
 ag uauuuau ucaUUACCA  UUGCACA UUAACa a
 || ||||||| |||||||||  ||||||| ||||||  
 uc auaaaua AGUAAUGGU  AACGUGU AAUugu a
g  -       a         CA       A      c 

>hma-mir-3003b (-39.10)   [hma-miR-3003b-5p:15-35] [hma-miR-3003b-3p:43-64]

ugc       a           G             u 
   uauuuau ucaUUACCAGU UGCACAUUUAACa u
   ||||||| ||||||||||| |||||||||||||  
   auaaaua aGUAAUGGUCA GCGUGUAAAUUgu a
guc       a           A             u 

>hma-mir-3004 (-23.60)   [hma-miR-3004:43-63]

uga   a        cau      a        uaa 
   aua ccaccaag   ucagaa aaauaguu   c
   ||| ||||||||   |||||| ||||||||   u
   ugu gguGGUUC   GGUUUU UUUAUCAA   u
-aa   a        --U      G        uua 

>hma-mir-3005 (-40.80)   [hma-miR-3005:45-66]

aua        a        c      gu        a 
   aacugaaa uuuaggaa cgguca  cgccaacc u
   |||||||| |||||||| ||||||  |||||||| g
   uugacuuu aAAUCCUU GUUAGU  GUGGUUgg u
uaa        a        A      AG        u 

>hma-mir-3006 (-24.20)   [hma-miR-3006:51-77]

gug        -       cu       gcaa        --g     u 
   guauauua gcuaauu  gugugcu    uuuuguua   gucga u
   |||||||| |||||||  |||||||    ||||||||   |||||  
   uauauaau uggUUAG  UAUACGA    AGGAUAAU   UAGUu c
ucg        g       --       ---G        AUU     g 

>hma-mir-3007 (-46.30)   [hma-miR-3007-5p:12-32] [hma-miR-3007-3p:42-62]

uug            C            UG   u 
   ugucaacaUGUU GGCGUUUUUACC  CAg g
   |||||||||||| ||||||||||||  ||| u
   acaguuGUACAA CCGCAAAAAUGG  guc a
aaa            A            GU   a 

>hma-mir-3008 (-39.40)   [hma-miR-3008:10-31]

uug              AG          A 
   uugucgUCAGCUGU  UUGACGACAA U
   ||||||||||||||  ||||||||||  
   aacagcagucgacg  aacugcuguu a
aua              -g          a 

>hma-mir-3009 (-24.40)   [hma-miR-3009:37-57]

uca         cu           a       
   aacuuuuau  gugacuuugau aaaaug 
   |||||||||  ||||||||||| ||||| a
   uugaaAAUA  CACUGAAACUA UUUuaa 
cua         AU           C       

>hma-mir-3010 (-33.00)   [hma-miR-3010:41-62]

aaaa    g            a        g   u 
    ucua gcaaauuuauuu ugcgcucu auu a
    |||| |||||||||||| |||||||| |||  
    agau cGUUUAAAUAAA ACGCGAGA Uaa a
-uua    a            A        G   a 

>hma-mir-3011 (-27.50)   [hma-miR-3011:44-65]

au    c                -uu      g    g 
  gauu uuucguaaaucauuuu   gaauca aggg a
  |||| ||||||||||||||||   |||||| ||||  
  uuaa aaagCAUUUAGUAAGG   UUUAGU Uccu a
ag    a                UAU      -    g 

>hma-mir-3012a (-30.20)   [hma-miR-3012a:41-63]

aa  a   a                 a   cuu 
  gg aaa cuuucugcaaauccacu aug   u
  || ||| ||||||||||||||||| |||    
  cc UUU GAAAGAUGUUUAGGUGA Uac   u
ga  a   C                 C   uua 

>hma-mir-3012b (-26.20)   [hma-miR-3012b:38-61]

gaa  a             u       a   c 
   gg aaaacuuucugua auccacu aug u
   || ||||||||||||| ||||||| |||  
   cc UUUUGAAAGAUGU UAGGUGA Uac u
uaa  A             U       C   u 

>hma-mir-3013 (-21.00)   [hma-miR-3013:7-31]

aaa      UC  AC   --         -AAUGu     -  a 
   ugaUGG  UG  UUC  GCUAUAGAG      aagcu cc c
   ||||||  ||  |||  |||||||||      ||||| ||  
   acuacc  ac  aag  ugauauuuu      uuuga gg c
aua      -u  cc   uu         guaguc     c  a 

>hma-mir-3014 (-25.10)   [hma-miR-3014:40-60]

-gcu         cugaa        u a  au 
    gaacgucgg     ugucuguu g cc  u
    |||||||||     |||||||| | ||  c
    uuuGCAGCC     ACAGACAA C gg  a
ccac         AAAAC        C -  cu 

>hma-mir-2030 (-33.60)   [hma-miR-2030:40-60]

auu   a          a  u       aa  u 
   ccc ggguagcaua ca uguaaga  ca u
   ||| |||||||||| || |||||||  || u
   ggg ccCAUCGUGU GU ACAUUCU  gu a
gau   a          C  C       GC  u 

>hsv1-mir-H11 (-117.00)   [hsv1-miR-H11:73-92]

                                                               u 
gggcguggccgcuauuauaaaaaaagugagaacgcgaagcguucgcacuuuguccuaauaaua a
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
cccgcaccggcgauaauauuuuuuucacucuugcgcuuCGCAAGCGUGAAACAGGAUUauuau u
                                                               a 

>hsv1-mir-H12 (-39.90)   [hsv1-miR-H12:53-74]

     c   c   g  cc    c          c       aua 
ggagu ggg acg cg  agug ucgcacuucg ccuaaua   u
||||| ||| ||| ||  |||| |||||||||| |||||||   a
cuuca cuc ugc gc  UCGC AGCGUGAAGC GGGUUau   u
     -   u   -  -U    A          A       aua 

>hsv1-mir-H13 (-34.70)   [hsv1-miR-H13:39-61]

   -a  c               c    uau 
gcg  ag guucgcacuucgucc aaua   a
|||  || ||||||||||||||| ||||   u
cgc  UC CGAGCGUGAAGCGGG UUau   a
   GG  A               A    uau 

>hsv1-mir-H14 (-56.94)   [hsv1-miR-H14-5p:13-36] [hsv1-miR-H14-3p:56-76]

          -  A       U  U   U   U     - gcgaac 
gccgugugcc cc GUCGCAC CG CCC GGC CAGGc c      c
|||||||||| || ||||||| || ||| ||| ||||| |       
cggcgcgcgg gg CAGCGUG GC GGG CCG GUCUg g      a
          u  -       C  -   -   U     a acaaga 

>hsv1-mir-H15 (-76.20)   [hsv1-miR-H15:62-83]

   -a     caugc     g  g      -     c  g          uug  u 
acc  cagcg     gccgg cc uugugg ggccc gg ccggggcccc   gg c
|||  |||||     ||||| || |||||| ||||| || ||||||||||   ||  
ugg  guugc     cggcc gg gGCACC CCGGG CC GGCCCCGGgg   cc c
   cg     -----     -  g      G     -  G          ---  g 

>hsv1-mir-H16 (-41.10)   [hsv1-miR-H16:23-44]

   c    ag     uua  -   CA      U   ---A    AG  - ac 
gcg agag  ccucg   ag agC  GGAGGC GGG    UCGA  GC c  a
||| ||||  |||||   || |||  |||||| |||    ||||  || |   
cgc ucuc  ggggc   uc ucg  cuuccg ccc    agcu  cg g  u
   u    ag     -cg  g   ac      c   cgca    cg  c ca 

>hsv1-mir-H17 (-62.91)   [hsv1-miR-H17:63-83]

    cacu   a        g     g ug g   -------     g   c 
ggcc    cgc cgccgccu cgcgc c  g gcc       ugggc cgc g
||||    ||| |||||||| ||||| |  | |||       ||||| |||  
ccgg    gcg guGGCGGA GCGCG G  C CGG       gcccg gcg c
    --cc   c        -     G GU G   Ugcaugu     -   u 

>hsv1-mir-H18 (-81.10)   [hsv1-miR-H18:5-27]

                A  CC   ACCaa   g c           c 
cgguCCCGCCCGCCGG CG  GGG     cgg a ggcgggcggcc a
|||||||||||||||| ||  |||     ||| | |||||||||||  
gccagggcgggcggcc gu  ccc     gcc u ccgcccgccgg a
                g  ua   -cccc   g u           g 

>hsv2-mir-H11 (-129.60)   [hsv2-miR-H11*:45-65] [hsv2-miR-H11:81-102]

    c                                                               a  u 
ucgg agggggcguggccgcccuucuaaaaaaagugagaacgcgAAGCGUUCGCACUUUGUCCUAaua ua a
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  
aguu ucccccgcaccggcgggaagauuuuuuucacucuugcgcUUCGCAAGCGUGAAACAGGAUUau au u
    -                                                               c  a 

>hsv2-mir-H12 (-34.60)   [hsv2-miR-H12:43-64]

      -c    c          c       a  u 
gggcgc  agug ucgcacuuug ccuaaua ua a
||||||  |||| |||||||||| ||||||| ||  
cuugcg  UCGC AGCGUGAAGC GGAUUau au u
      cU    A          A       c  a 

>hsv2-mir-H13 (-36.20)   [hsv2-miR-H13:41-62]

   ga  c          c            u 
cgc  ag guucgcacuu guccuaauagua a
|||  || |||||||||| ||||||||||||  
gcg  UC CGAGCGUGAA CGGGAUUauuau u
   -G  A          A            a 

>hsv2-mir-H19 (-45.00)   [hsv2-miR-H19:14-35]

    a    u         A    A   C G  -  gc 
cggg cggg gagUUCGCU GGCA GCA G AC UG  g
|||| |||| ||||||||| |||| ||| | || ||  g
gccc gccc cucaaguga ccgu cgu c ug ac  u
    c    u         g    g   a g  c  au 

>hsv2-mir-H20 (-53.60)   [hsv2-miR-H20:49-69]

   c           c        g aau       acgc 
gga agggggggaga gagggguc g   ccaaagg    a
||| ||||||||||| |||||||| |   |||||||     
ccu ucccccccUCU UUCCCCAG C   GGUUUcc    g
   -           -        G AUU       acca 

>hsv2-mir-H21 (-14.50)   [hsv2-miR-H21:36-56]

     -      cc  acc    -  ---c   c 
guuug uuucgu  ga   caug cg    cuc a
||||| ||||||  ||   |||| ||    |||  
cagac aaGGCA  CU   GUAC GC    gag u
     c      -U  GUC    U  AAUA   c 

>hsv2-mir-H22 (-52.30)   [hsv2-miR-H22:5-26]

         UCU     U   U    g   gga  g   gg 
ccccAGGGG   GGACG GGG GGGC cgg   gc cgg  a
|||||||||   ||||| ||| |||| |||   || |||   
ggggucccc   ccugc cuc uccg gcc   cg gcc  c
         ---     -   u    a   ---  g   ag 

>hsv2-mir-H23 (-42.90)   [hsv2-miR-H23:13-32] [hsv2-miR-H23*:57-77]

     -gac    -  -             C    gaga   uca 
cgucc    ggag AG GCCGUGGAGCUUG CAGC    cgc   u
|||||    |||| || ||||||||||||| ||||    |||   g
gcggg    cCUC UC UGGCGCUUCGAGC guug    gcg   a
     accc    A  A             A    ---a   caa 

>hsv2-mir-H24 (-57.00)   [hsv2-miR-H24:44-66]

    c         c     g   c    g g c 
gcgg ggcgggggg aggcg cgg aggc c g g
|||| ||||||||| ||||| ||| |||| | |  
cgcU CCGCCCCCC UCCGC GCC UCcg g c u
    C         U     G   -    g g g 

>hsv2-mir-H25 (-48.30)   [hsv2-miR-H25:40-60]

---  c g          g       ac   --  g 
   gc g cgucccgguc ccgccgc  cag  gg c
   || | |||||||||| |||||||  |||  || a
   cg c gCAGGGCCAG GGCGGCG  GUC  cc c
cgg  a g          A       -C   gg  a 

>mmu-mir-3072 (-47.20)   [mmu-miR-3072*:16-37] [mmu-miR-3072:51-72]

      uu     c     -AC  C AG  A       cu     
gggcug  gagug gAGGG   CC G  GG GGGCAGG  gccc 
||||||  ||||| |||||   || |  || |||||||  ||| c
cccgac  cucgu CUUCC   GG C  CC CCCGUcc  cgga 
      --     U     GAA  A CU  -       --     

>hsa-mir-3115 (-25.00)   [hsa-miR-3115:6-25]

    a    --       C         ----   a 
ucug AUAU  GGGUUUA UAGUUGGUg    gug a
|||| ||||  ||||||| |||||||||    |||  
agac ugua  uccggau aucaaccgc    uac u
    c    uu       u         ugag   u 

>hsa-mir-3116-1 (-57.60)   [hsa-miR-3116:45-66]

                                gggu 
cuuuauugagucccuacuauguuccaggcacu    a
||||||||||||||||||||||||||||||||     
gaaauaacUCAGGGAUGAUACAAGGUCCGUgg    u
                                augc 

>hsa-mir-3116-2 (-51.10)   [hsa-miR-3116:42-63]

                            cuacg 
uauugagucccuacuauguuccaggcac     a
||||||||||||||||||||||||||||      
auaacUCAGGGAUGAUACAAGGUCCGUg     u
                            accca 

>hsa-mir-3117 (-29.30)   [hsa-miR-3117:46-66]

   -     g   a a       c     a     ggg 
ccc uaaag gcc g cacuaua gaguc uauaa   a
||| ||||| ||| | ||||||| ||||| |||||   a
ggg guuuu ugG C GUGAUAU CUCAG AUAuu   g
   u     g   A C       A     G     acg 

>hsa-mir-3118-1 (-37.30)   [hsa-miR-3118:44-66]

          u               a     caua 
cacacuacaa aauuuucauaaugca ucaca    a
|||||||||| ||||||||||||||| |||||    u
gugugauguU UUAAAAGUAUUACGU AGUGU    c
          C               C     auca 

>hsa-mir-3118-2 (-34.70)   [hsa-miR-3118:43-65]

         u               a     caua 
acacuacaa aauuuucauaaugca ucaca    a
||||||||| ||||||||||||||| |||||    u
ugugauguU UUAAAAGUAUUACGU AGUGU    c
         C               C     auca 

>hsa-mir-3118-3 (-37.30)   [hsa-miR-3118:44-66]

          u               a     caua 
cacacuacaa aauuuucauaaugca ucaca    a
|||||||||| ||||||||||||||| |||||    u
gugugauguU UUAAAAGUAUUACGU AGUGU    c
          C               C     auca 

>hsa-mir-3119-1 (-49.40)   [hsa-miR-3119:9-28]

       c                         g    cua 
auuaacu UGGCUUUUAACUUUGAUGGCaaagg guag   a
||||||| ||||||||||||||||||||||||| ||||   a
uaauuga accgaaaauugaaacuaccguuucu uauc   c
       u                         g    uaa 

>hsa-mir-3119-2 (-44.20)   [hsa-miR-3119:9-28]

       a                        aca   auu 
auuaacu UGGCUUUUAACUUUGAUGGCaaag   uag   g
||||||| ||||||||||||||||||||||||   |||   u
uaauuga accgaaaauugaaacuaccguuuc   auc   u
       g                        ccc   gau 

>hsa-mir-3120 (-49.60)   [hsa-miR-3120:51-71]

        a           ug c      a    ugag 
gucaugug cugccugucug  c ugcugu cagg    c
|||||||| |||||||||||  | |||||| ||||    g
caguacac gACGGACAGAU  G ACGACA gucu    g
        a           GU A      C    ugua 

>hsa-mir-3121 (-39.90)   [hsa-miR-3121:47-68]

     guua                        --  a 
aaaug    uguccuuugccuauucuauuuaag  ac c
|||||    ||||||||||||||||||||||||  || c
uuuac    ACAGGAAACGGAUGAGAUAAAUuc  ug c
     aaag                        ca  u 

>hsa-mir-3122 (-47.80)   [hsa-miR-3122:10-31]

         G  G        G  C         u 
accagcucu UU GGACAAGA GA GGUCUUcuu u
||||||||| || |||||||| || ||||||||| g
uggucgaga aa ccuguucu cu ccagaagga g
         g  g        a  a         a 

>hsa-mir-3123 (-31.10)   [hsa-miR-3123:49-65]

      --u        ug      ccau      au 
auggau   ugauugaa  auucuc    uuccac  g
||||||   ||||||||  ||||||    ||||||  g
uaccua   aCUAAUUU  UAAGAG    gaggug  a
      ugu        GU      ACcc      ag 

>hsa-mir-3124 (-32.50)   [hsa-miR-3124:7-27]

  g           C -A   C      g    c 
gc ggcUUCGCGGG G  AGG AAAGUC auuu c
|| ||||||||||| |  ||| |||||| ||||  
cg cugaagugccc c  ucc uuucag ugaa a
  g           u ac   -      -    a 

>hsa-mir-548s (-39.70)   [hsa-miR-548s:52-74]

u  c                     u         uuuaa 
 ug ugcaaaaauaauugcaguuuu gccauuauu     u
 || ||||||||||||||||||||| |||||||||      
 ac acguUUUUAUUGACGUCAAAA CGGUAauaa     a
a  c                     C         uauua 

>hsa-mir-3125 (-32.40)   [hsa-miR-3125:10-29]

   aau   UA       C  U   --GA    u       
gag   ggg  GAGGAAG UG GGA    GAac cacggu 
|||   |||  ||||||| || |||    |||| ||||| g
cuc   ucc  cuccuuc gc ccu    cuug gugucc 
   cuu   uc       c  c   agag    -       

>hsa-mir-3126 (-27.90)   [hsa-miR-3126-5p:10-31] [hsa-miR-3126-3p:46-67]

        a  A G   A         A   cuggu 
augauuau UG G GAC GAUGCCAGA GCA     u
|||||||| || | ||| ||||||||| |||      
uauuaauA AC C CUG CUACGGUCU Cgu     a
        G  A A   C         A   uuagu 

>hsa-mir-3127 (-46.60)   [hsa-miR-3127:11-33]

     g     UCA       UG   U      - aga 
ggcca gcccA   GGGCUUG  GAA GGGAAG g   a
||||| |||||   |||||||  ||| |||||| |    
ucggu ugggu   uccggac  cuu cccuuc c   g
     g     -cg       gu   c      g agg 

>hsa-mir-3128 (-35.10)   [hsa-miR-3128:5-27]

u    CUG                      cc 
 uccU   GCAAGUAAAAAACUCUCAUuuu  u
 ||||   ||||||||||||||||||||||   
 agga   cguucauuuuuugagaguaaaa  u
a    uaa                      aa 

>hsa-mir-3129 (-49.10)   [hsa-miR-3129:9-30]

gua                            ccu   a 
   cuuggGCAGUAGUGUAGAGAUUGGUUUg   guu a
   ||||||||||||||||||||||||||||   |||  
   gaacccgucgucacaucucuaaucaaac   uaa u
cga                            --u   g 

>hsa-mir-3130-1 (-71.20)   [hsa-miR-3130-5p:13-33] [hsa-miR-3130-3p:44-64]

                                  gu 
cuugucaugucuUACCCAGUCUCCGGUGCAGCCu  u
||||||||||||||||||||||||||||||||||  g
gaacaguacagAAUGGGUCAGAGGCCACGUCGga  u
                                  ac 

>hsa-mir-3130-2 (-69.90)   [hsa-miR-3130-5p:13-33] [hsa-miR-3130-3p:44-64]

                                  ug 
cuugucaugucuUACCCAGUCUCCGGUGCAGCCu  a
||||||||||||||||||||||||||||||||||  c
gaacaguacagAAUGGGUCAGAGGCCACGUCGga  a
                                  ca 

>hsa-mir-3130-3 (-67.80)   [hsa-miR-3130-5p:11-31] [hsa-miR-3130-3p:42-62]

u                               gu 
 gucaugucuUACCCAGUCUCCGGUGCAGCCu  u
 |||||||||||||||||||||||||||||||  g
 caguacagAAUGGGUCAGAGGCCACGUCGga  u
a                               ac 

>hsa-mir-3130-4 (-66.50)   [hsa-miR-3130-5p:11-31] [hsa-miR-3130-3p:42-62]

u                               ug 
 gucaugucuUACCCAGUCUCCGGUGCAGCCu  a
 |||||||||||||||||||||||||||||||  c
 caguacagAAUGGGUCAGAGGCCACGUCGga  a
a                               ca 

>hsa-mir-3131 (-30.50)   [hsa-miR-3131:4-26]

   UC    A    U  -A        --  cc 
gag  GAGG CUGG GG  AGGGCCUU  uc  c
|||  |||| |||| ||  ||||||||  ||   
cuc  cuuc gacc cc  ucccggaa  ag  u
   uu    -    -  gg        cc  ac 

>hsa-mir-3132 (-41.40)   [hsa-miR-3132:8-31]

           U    -A   A      A   ----c  u 
ggugggaUGGG AGAG  AGG GCUCAG GGA     gg g
||||||||||| ||||  ||| |||||| |||     ||  
ccacccuacuc ucuc  ucc cgaguu ccu     cc c
           -    cc   -      c   uuguu  g 

>hsa-mir-3133 (-33.10)   [hsa-miR-3133:10-31]

     au                   C      uaaaa 
cagaa  ugUAAAGAACUCUUAAAAC CAAUag     a
|||||  ||||||||||||||||||| ||||||      
gucuu  auauuucuugagaauuuug guuguc     g
     au                   a      caaca 

>hsa-mir-378b (-24.90)   [hsa-miR-378b:34-52]

    a  ga         g      ga 
gguc uu  gucuucaag cuagug  a
|||| ||  ||||||||| ||||||  a
ccag AA  CGGAGGUUC GGUCAc  g
    a  GA         A      ga 

>hsa-mir-3134 (-41.70)   [hsa-miR-3134:45-67]

u                         c   c  gga 
 guauccaauguguagucuuuuaucc uca au   g
 ||||||||||||||||||||||||| ||| ||    
 caugggUUAUACAUCAGAAAAUAGG AGU ua   u
a                         U   a  aaa 

>hsa-mir-3135 (-33.30)   [hsa-miR-3135:10-31]

      u  U       ---C    A         u  aa 
ucacuu gg GCCUAGG    UGAG CUGCAGUGg gc  u
|||||| || |||||||    |||| ||||||||| ||  c
agugga cu cgggucc    guuc gacgucacu ug  u
      -  -       ucca    c         -  ac 

>hsa-mir-466 (-49.40)   [hsa-miR-466:52-74]

                     a       a        uau 
guguguguauauguguguugc ugugugu uaugugug   a
||||||||||||||||||||| ||||||| ||||||||    
cguacauauaUACACACAACG ACAUACA AUAcacau   u
                     C       C        gua 

>hsa-mir-3136 (-40.40)   [hsa-miR-3136:10-32]

      a                A      UUuuuc    a 
aauaug aaCUGACUGAAUAGGU GGGUCA      ugug c
|||||| |||||||||||||||| ||||||      ||||  
uuauac uugauugacuuaucca cccggu      acac u
      c                a      ------    g 

>hsa-mir-544b (-23.40)   [hsa-miR-544b:48-69]

  a         -       g    -  uu    uag u 
gg auuuuguua aaaugca aauc ca  ucug   c c
|| ||||||||| ||||||| |||| ||  ||||   | u
cc ugaaacAAU UUUACGU UUGG GU  Agau   g g
  g         C       G    A  CC    -ca a 

>hsa-mir-3137 (-45.09)   [hsa-miR-3137:7-30]

       C       UG      A      guauggu 
uacaggU UGUAGCC  GGAGCA UGGGGU       a
||||||| |||||||  |||||| ||||||        
augucca acaucgg  ccucgu gcuccg       u
       a       gu      -      augggga 

>hsa-mir-3138 (-59.90)   [hsa-miR-3138:48-71]

                 c c         -  -   --g  c 
cccuccucggcacuucc c accucacug cc cgg   ug c
||||||||||||||||| | ||||||||| || |||   ||  
gggaggagccgUGAGGG G UGGAGUGAC GG GUc   ac c
                 A A         A  U   aga  a 

>hsa-mir-3139 (-32.40)   [hsa-miR-3139:10-32]

   u  gag         AACA          gacug 
ggc ca   UAGGAGCUC    GAUGCCUGUU     a
||| ||   |||||||||    ||||||||||      
ccg gu   guuuucgag    cuauggacaa     a
   u  auu         gacg          auaau 

>hsa-mir-3140 (-43.00)   [hsa-miR-3140:60-81]

-c        g          a           a   a   ugaa 
  cucuugag uaccugaauu ccaaaagcuuu ugu uuc    g
  |||||||| |||||||||| ||||||||||| ||| |||     
  gaggacuU AUGGACUUAA GGUUUUCGAga aua aag    u
gu        G          G           -   a   uuau 

>hsa-mir-548t (-40.20)   [hsa-miR-548t:10-30]

   g               C          ca   u 
agg uggugCAAAAGUGAU GUGGUUUUUG  auu u
||| ||||||||||||||| ||||||||||  |||  
ucc accacguuuucauua caccaaaaac  uaa u
   a               a          ag   u 

>hsa-mir-3141 (-37.90)   [hsa-miR-3141:10-28]

---uca            G     A  A  A 
      cccgguGAGGGC GGUGG GG GG g
      |||||||||||| ||||| || || g
      gggucacuuccg cuacc cc cc g
agggca            a     a  -  u 

>hsa-mir-3142 (-49.00)   [hsa-miR-3142:49-70]

u    aaa            cc            --g    a 
 ucag   ggccuuucugaa  uucagaaaggcu   cuga u
 ||||   ||||||||||||  ||||||||||||   ||||  
 aguc   ucggaaAGACUU  AAGUCUUUCCGG   gacu c
a    --g            CC            AAa    u 

>hsa-mir-3143 (-21.10)   [hsa-miR-3143:4-28]

    U            ---C     UUUC  gg 
uagA AACAUUGUAAAG    GCUUC    Gc  u
|||| ||||||||||||    |||||    ||   
aucu uuguaacauuuc    cgagg    cg  u
    -            ucaa     ---u  gg 

>hsa-mir-548u (-36.30)   [hsa-miR-548u:49-71]

      a               - ug      u  u   c 
auuagg uggugcaaaaguaau g  guuuuu uc uua u
|||||| ||||||||||||||| |  |||||| || |||  
uaaucc accGCGUUUUCAUUA C  CAGAAA gg aau u
      a               A GU      C  u   u 

>hsa-mir-3144 (-37.10)   [hsa-miR-3144-5p:13-34] [hsa-miR-3144-3p:48-69]

                    A  G  A       auau 
aacuacacuuuaAGGGGACC AA AG UAUAUAG    c
|||||||||||||||||||| || || |||||||    a
uugaugugaaAUUUCUCUGG UU UC AUAUAuc    g
                    C  G  C       cauc 

>hsa-mir-3145 (-43.20)   [hsa-miR-3145:49-72]

             c               ---      g u 
uauaugaguucaa uccaaacacucaaaa   cucauu u g
||||||||||||| |||||||||||||||   |||||| | a
auaugcucaaGUU AGGUUUGUGAGUUUU   GAguaa g a
             A               AUA      g u 

>hsa-mir-1273c (-46.10)   [hsa-miR-1273c:10-31]

ug    c         A        C       uuuu 
  cagc ugGGCGACA AACGAGAC CUGUCuu    u
  |||| ||||||||| |||||||| |||||||    u
  gucg acccguugu uugcucug gacagag    u
ag    a         c        a       ucuu 

>hsa-mir-3146 (-46.50)   [hsa-miR-3146:50-71]

          -                  a   ---   a 
gcuaaguccc uucuuucuauccuaguau acu   uga g
|||||||||| |||||||||||||||||| |||   ||| a
cgguucagGG AAGAAAGAUAGGAUCGUA uga   acu a
          U                  C   uaa   u 

>hsa-mir-3147 (-36.80)   [hsa-miR-3147:6-29]

               U A  A   U   A   cg 
guccgGGUUGGGCAG G GG GGG GUG cgc  c
||||||||||||||| | || ||| ||| |||   
caggcucaaccuguu c cc cuc cac gug  g
               - -  g   -   -   aa 

>hsa-mir-548v (-30.20)   [hsa-miR-548v:49-70]

    c      u a             cg     --  ca 
aaua uagguu g gcaaaaguaauug  guuuu  gc  u
|||| |||||| | |||||||||||||  |||||  ||   
uuau auccgA C CGUUUUCAUUGAC  CGAaa  cg  c
    a      C A             AU     ac  ua 

>hsa-mir-3148 (-44.50)   [hsa-miR-3148:10-31]

        a                      a   au 
gaguuaag UGGAAAAAACUGGUGUGUGCUU uug  g
|||||||| |||||||||||||||||||||| |||  u
cucaauuc accuuuuuugacuacauacgaa aac  a
        a                      c   cg 

>hsa-mir-3149 (-41.30)   [hsa-miR-3149:51-73]

                         aucc   c     cau 
auacauacauguacacacacauguc    aca acaua   a
|||||||||||||||||||||||||    ||| |||||    
uaugugugugUAUGUGUGUGUAUAG    UGU Uguau   u
                         -GUA   U     aua 

>hsa-mir-3150 (-64.70)   [hsa-miR-3150:49-70]

                    c            a c  a 
gggaagcaggccaaccucga gaucuccucagc c ug a
|||||||||||||||||||| |||||||||||| | || c
ccuuucguccGGUUGGAGCU CUAGAGGGGUCg g ac g
                    C            - a  c 

>hsa-mir-3151 (-55.00)   [hsa-miR-3151:10-30]

               G AA           -----    c 
ggggugaugGGUGGG C  UGGGAUCAGGU     gccu a
||||||||||||||| |  |||||||||||     ||||  
ccccacuguccaccc g  acccuagucca     cggg a
               - ac           cccua    a 

>hsa-mir-3152 (-50.10)   [hsa-miR-3152:45-66]

                              -a  cu 
gugcagaguuauugccucuguucuaacaca  ga  a
||||||||||||||||||||||||||||||  ||  g
cacgucucAAUAACGGGGAUAAGAUUGUGU  cu  g
                              cc  uc 

>hsa-mir-3153 (-47.00)   [hsa-miR-3153:50-72]

                     uc c   c         aa 
gacaaauuuuaaaugucccug  c cuu cccccaauu  a
|||||||||||||||||||||  | ||| |||||||||   
uuguuuaaaaUUUACAGGGAU  G GAA GGGGguuag  g
                     GA C   A         au 

>hsa-mir-3074 (-36.22)   [hsa-miR-3074:50-71]

     -a    u  u        a    -gc    gugua 
gcucg  cucc gu ccugcuga cuga   cagu     a
|||||  |||| || |||||||| ||||   ||||     a
ugggc  gagG CA GGAUGACU GACU   Guca     a
     gg    C  C        C    AUA    agagu 

>hsa-mir-3154 (-44.80)   [hsa-miR-3154:54-75]

  -      cu   ca  -          g  caccc     -a gu 
gg ccccuc  ucu  gc cccagcuccc cu     cugcc  c  c
|| ||||||  |||  || |||||||||| ||     |||||  |   
cc ggggag  AGA  CG GGGUUGAGGG GA     GACgg  g  a
  a      --   --  A          -  ----A     ag aa 

>hsa-mir-3155 (-70.30)   [hsa-miR-3155:52-72]

           cc                      cc   c 
uccgggcauca  ucccacugcagagccuggggag  gga a
|||||||||||  ||||||||||||||||||||||  |||  
agguccguagU  AGGGUGACGUCUCGGACCcuuc  ccu g
           CA                      --   c 

>hsa-mir-3156-1 (-48.40)   [hsa-miR-3156:8-29]

     -                     A    uuuac 
gcaga agAAAGAUCUGGAAGUGGGAG CAcu     u
||||| ||||||||||||||||||||| ||||      
ugucu ucuuucuagaccuucacccuc guga     a
     c                     g    uauau 

>hsa-mir-3157 (-52.90)   [hsa-miR-3157:10-31]

               C       U      Ugcu ug g   a 
gggaagggcUUCAGC AGGCUAG GCAGUC    u  u cca c
||||||||||||||| ||||||| ||||||    |  | |||  
cccuuuucgaagucg ucugauc cgucag    a  g ggu a
               a       c      ---u gu g   c 

>hsa-mir-3158-1 (-74.10)   [hsa-miR-3158:50-71]

                                  ---   u 
auucaggccgguccugcagagaggaagcccuucu   gcu a
||||||||||||||||||||||||||||||||||   |||  
uaaguccggcCAGGACGUCUCUCCUUCGGGAAgg   ugg c
                                  uua   a 

>hsa-mir-3158-2 (-70.66)   [hsa-miR-3158:50-71]

                                 caauac 
auucaggccgguccugcagagaggaagcccuuc      c
|||||||||||||||||||||||||||||||||      u
uaaguccggcCAGGACGUCUCUCCUUCGGGAAg      g
                                 acgaau 

>hsa-mir-3159 (-36.40)   [hsa-miR-3159:10-31]

       c  A        A    C      -gg    
ccaaagu cU GGAUUACA GUGU GGCCAC   gcu 
||||||| || |||||||| |||| ||||||   || g
gguuuua ga ccuaaugu cgca ucggug   cgg 
       c  c        c    c      aca    

>hsa-mir-3160-1 (-81.50)   [hsa-miR-3160:54-75]

                                   --       
ggaccugcccugggcuuucuagucucagcucuccu  ccagcu 
|||||||||||||||||||||||||||||||||||  ||||| c
cuuggacgggACCCGAAAGAUCAGAGUCGAGAgga  ggucga 
                                   cu       

>hsa-mir-3160-2 (-78.20)   [hsa-miR-3160:52-73]

                                 ga       
accugcccugggcuuucuagucucagcucuccu  ccagcu 
|||||||||||||||||||||||||||||||||  ||||| g
uggacgggACCCGAAAGAUCAGAGUCGAGAgga  ggucga 
                                 --       

>hsa-mir-3161 (-33.80)   [hsa-miR-3161:10-32]

  uc a     -GA                 -    aag 
cc  g gagCU   UAAGAACAGAGGCCCAG AUug   u
||  | |||||   ||||||||||||||||| ||||    
gg  c cuuga   auuuuuguuuccggguc ugau   u
  uc -     acc                 g    aag 

>hsa-mir-3162 (-47.60)   [hsa-miR-3162:10-32]

           A      A  A          cau   ca 
cugacuuuuUU GGGAGU GA GGGUGGGGAG   gaa  a
||||||||||| |||||| || ||||||||||   |||   
gacugaaaaaa cccuca cu cccaucccuc   cuu  u
           c      c  c          acu   ug 

>hsa-mir-3163 (-40.60)   [hsa-miR-3163:10-31]

u                 A   C        cuuc 
 uccucaucUAUAAAAUG GGG AGUAAGAC    c
 ||||||||||||||||| ||| ||||||||    u
 aggaguagauauuuuac ccc ucauucug    u
a                 c   a        uucc 

>hsa-mir-3164 (-46.30)   [hsa-miR-3164:10-31]

-  u                  G         -caca      
 cu ggaaacUGUGACUUUAAG GAAAUGGCG     gcaga 
 || |||||||||||||||||| |||||||||     |||| c
 ga ccuuugacgcugaaguuc uuuugccgu     cgucc 
g  c                  g         acuaa      

>hsa-mir-3165 (-53.00)   [hsa-miR-3165:10-31]

       c                       ----  u 
ccggugg aAGGUGGAUGCAAUGUGACCUCA    ac c
||||||| |||||||||||||||||||||||    || u
ggucacc uuccaccuauguuacacuggagu    ug u
       a                       cucc  g 

>hsa-mir-3166 (-61.24)   [hsa-miR-3166:60-82]

          g                            uuucug 
aaauuuuuuu aggccaguaggcauugucugcguuagga      u
|||||||||| ||||||||||||||||||||||||||||       
uuuaaaaaga UCCGGUCAUCCGUAACAGACGCaauccu      a
          A                            ccuacu 

>hsa-mir-1260b (-42.90)   [hsa-miR-1260b:10-28]

u u    uuA       --    C         ug   cuguu    a 
 c ccgu   UCCCACC  ACUG CACCAUuau  cua     cagc g
 | ||||   |||||||  |||| |||||||||  |||     ||||  
 g ggcg   ggggugg  ugau gugguagug  ggu     gucg g
g u    ---       uc    a         gu   ----c    u 

>hsa-mir-3167 (-54.20)   [hsa-miR-3167:54-75]

      -  a                       uuu       a 
ggcugu gg ggcaccaguauuucugaaauucu   uucugaa u
|||||| || |||||||||||||||||||||||   |||||||  
ccgaca cc cUGUGGUCAUAAAGACUUUAGGA   aggacuu u
      g  -                       ---       c 

>hsa-mir-3168 (-29.10)   [hsa-miR-3168:9-25]

   a    GA    UACA    G     cu   u      c 
aag ucau  GUUC    GUCA ACagc  gag uggagg u
||| ||||  ||||    |||| |||||  ||| ||||||  
uuc agug  cggg    cagu ugucg  cuu acuucu c
   -    ac    -ucc    g     uu   c      a 

>hsa-mir-3169 (-55.20)   [hsa-miR-3169:12-33]

                                 c  aaag 
augugaaaacaUAGGACUGUGCUUGGCACAUAG ac    u
||||||||||||||||||||||||||||||||| ||    c
uacauuuuuguguccugauacgaaccguguguc ug    u
                                 a  guau 

>hsa-mir-3170 (-49.00)   [hsa-miR-3170:10-31]

         CU               A       agc 
cugguaaca  GGGGUUCUGAGACAG CAGUguu   u
|||||||||  ||||||||||||||| |||||||   c
gaccauugu  ccccaagauucuguc guuacga   c
         au               c       aga 

>hsa-mir-3171 (-31.90)   [hsa-miR-3171:10-33]

          GAUG                  C   a 
uauauauagA    UAUGGAAUCUGUAUAUAU uau u
||||||||||    |||||||||||||||||| |||  
guauauaucu    auaccuuagauauauaug gua a
          --aa                  u   u 

>hsa-mir-3172 (-30.70)   [hsa-miR-3172:2-20]

       --UU       CU   cu ca           a 
gUGGGGU    UGCAGUC  UAg  g  aaugaguccuu g
|||||||    |||||||  |||  |  |||||||||||  
uaccuua    acgucgg  auu  u  uuacucaggga c
       uaau       -u   uu uc           a 

>hsa-mir-3173 (-47.60)   [hsa-miR-3173:43-64]

      c                     ga  u 
ucccug ccugccuguuuucuccuuugu  uu u
|||||| |||||||||||||||||||||  ||  
agggAC GGACGGAUAAAGGAGGAAAca  ag a
      C                     ag  u 

>hsa-mir-1193 (-35.40)   [hsa-miR-1193:10-32]

gua    a G       -    C      G    cu  au 
   gcug g GGAUGGU AGAC GGUGAC UGCa  uc  u
   |||| | ||||||| |||| |||||| ||||  ||   
   cgac c ccuauca uuug ccacug augu  ag  u
ccg    - a       g    c      g    --  ca 

>hsa-mir-323b (-40.44)   [hsa-miR-323b-5p:15-37] [hsa-miR-323b-3p:51-72]

u     u             U     GUGAGUUC         
 gguac cggagggAGGUUG CCGUG        GCAuuauu 
 ||||| ||||||||||||| |||||        ||||||| u
 cuaug gcuuUUCUCCAGC GGCAC        Cguaguaa 
a     -             U     --AUAACC         

>hsa-mir-3118-4 (-33.20)   [hsa-miR-3118:44-66]

       c  u               a      aca 
cauacua aa aauuuucauaaugca ucacac   a
||||||| || ||||||||||||||| ||||||   u
gugugau uU UUAAAAGUAUUACGU AGUGUg   c
       c  C               C      cca 

>hsa-mir-3174 (-32.40)   [hsa-miR-3174:10-32]

      ug   -       A          GC  ---u  ---   c 
guuacc  gUA GUGAGUU GAGAUGCAGA  Cc    gg   gcu c
||||||  ||| ||||||| ||||||||||  ||    ||   |||  
uaaugg  cgu cacuuaa uuuuacgucu  gg    cc   cga u
      ua   a       -          -a  ucau  aaa   c 

>hsa-mir-3175 (-40.60)   [hsa-miR-3175:10-31]

      --   C         A   AG      cug  c 
ccuggg  ggg GGGGAGAGA CGC  UGACGU   gc g
||||||  ||| ||||||||| |||  ||||||   || c
ggaccc  ccc cuccucuuu gcg  gcugua   cg g
      au   c         c   -g      -cg  u 

>hsa-mir-3176 (-51.70)   [hsa-miR-3176:60-78]

u    ucuccagucu  a        c  c         cac    -     
 ggcc          gc gcucccgg ag cucgggcca   uccc ggga 
 ||||          || |||||||| || |||||||||   |||| ||| u
 ccgg          cg ugggGGCC UC GGGUCCGGU   Aggg cccc 
g    ----------  g        A  A         --C    a     

>hsa-mir-3177 (-44.90)   [hsa-miR-3177:54-74]

   c           aca  c     ag       cu      
cca gugccaugugu   ca gugcc  gcgcugu  ugaga 
||| |||||||||||   || |||||  |||||||  |||| c
ggu cacggUGCACA   GU CACGG  CGUgacg  gcuua 
   -           GGG  -     CA       -c      

>hsa-mir-3178 (-45.31)   [hsa-miR-3178:11-27]

      -------     -        ----   -G        a a 
gaggcu       gggcG GGGCGCGG    CCG  AUCGgucg g g
||||||       ||||| ||||||||    |||  |||||||| | c
cucuga       cccgc cccgugcc    ggc  uagucggu c g
      cgcaaac     a        cucu   ag        c u 

>hsa-mir-3179-1 (-61.00)   [hsa-miR-3179:52-73]

                      a               gcc 
caggaucacagacguuuaaauu cacuccuucugcugu   u
|||||||||||||||||||||| |||||||||||||||    
guccuagugucUGCAAAUUUAA GUGGGGAAGAugacg   u
                      A               aca 

>hsa-mir-3180-1 (-60.70)   [hsa-miR-3180-5p:18-42] [hsa-miR-3180-3p:62-83]

cagu   ac      a      A  C              ----------  c 
    gcg  gggcgg gCUUCC GA GCUCCGCCCCACGU          CG a
    |||  |||||| |||||| || ||||||||||||||          ||  
    cgu  cccgcc CGGAGG CU CGAGGCGGGGUgcg          gc u
--gu   --      C      C  U              aaagggcccc  g 

>hsa-mir-3180-2 (-59.50)   [hsa-miR-3180-5p:14-38] [hsa-miR-3180-3p:58-79]

gcgac      a      A  C              ----------  c 
     gggcgg gCUUCC GA GCUCCGCCCCACGU          CG a
     |||||| |||||| || ||||||||||||||          ||  
     cccgcc CGGAGG CU CGAGGCGGGGUgcg          gc u
--cgu      C      C  U              aaagggcccc  g 

>hsa-mir-3179-2 (-61.00)   [hsa-miR-3179:52-73]

                      a               gcc 
caggaucacagacguuuaaauu cacuccuucugcugu   u
|||||||||||||||||||||| |||||||||||||||    
guccuagugucUGCAAAUUUAA GUGGGGAAGAugacg   u
                      A               aca 

>hsa-mir-3180-3 (-60.70)   [hsa-miR-3180-5p:18-42] [hsa-miR-3180-3p:62-83]

cagu   ac      a      A  C              ----------  c 
    gcg  gggcgg gCUUCC GA GCUCCGCCCCACGU          CG a
    |||  |||||| |||||| || ||||||||||||||          ||  
    cgu  cccgcc CGGAGG CU CGAGGCGGGGUgcg          gc u
--gu   --      C      C  U              aaagggcccc  g 

>hsa-mir-3179-3 (-61.00)   [hsa-miR-3179:52-73]

                      a               gcc 
caggaucacagacguuuaaauu cacuccuucugcugu   u
|||||||||||||||||||||| |||||||||||||||    
guccuagugucUGCAAAUUUAA GUGGGGAAGAugacg   u
                      A               aca 

>hsa-mir-548w (-38.00)   [hsa-miR-548w:10-32]

                 C  C  U       Uuuca 
gguuggugcAAAAGUAA UG GG UUUUGCC     a
||||||||||||||||| || || |||||||      
cuaaccacguuuucauu ac cc aaaacgg     c
                 a  a  c       uaaua 

>hsa-mir-3181 (-52.40)   [hsa-miR-3181:9-27]

        AU       --     G C      uua 
cggcgacc  CGGGCCC  UCGGC C GGcccg   g
||||||||  |||||||  ||||| | ||||||   u
gccguugg  gcccggg  ggccg g ccgggc   u
        gc       cc     a c      ccg 

>hsa-mir-3182 (-25.90)   [hsa-miR-3182:4-20]

      U    A  G  GU   u     cgc 
gcuGCU CUGU GU UA  Ccg gcauc   c
|||||| |||| || ||  ||| |||||    
ugacga gaua ua gu  ggu cguag   c
      -    c  g  ug   u     cuu 

>hsa-mir-3183 (-49.70)   [hsa-miR-3183:10-31]

       -  G        --    U   U     cag  a  u 
cucugcc cu CCUCUCUC  GGAG CGC CGGAg   uc cg u
||||||| || ||||||||  |||| ||| |||||   || ||  
gggacgg ga ggagggag  ccuc gcg gccuc   ag gc g
       a  -        cu    c   -     cua  -  a 

>hsa-mir-3184 (-30.30)   [hsa-miR-3184:10-33]

   ca  a         CUC   C    -     gga 
aag  ag cUGAGGGGC   AGA CGAG CUUUU   a
|||  || |||||||||   ||| |||| |||||   a
uuc  uc gacuccccg   ucu gcuc gaaaa   a
   aa  c         -uc   c    u     gau 

>hsa-mir-3185 (-40.60)   [hsa-miR-3185:8-30]

-ga     AGA         UC  -       gag 
   augga   AGAAGGCGG  GG UCUGCGG   c
   |||||   |||||||||  || |||||||    
   uaccu   ucuuccgcc  cc agacgcc   c
cug     --g         ua  g       gga 

>hsa-mir-3065 (-35.10)   [hsa-miR-3065-5p:10-32] [hsa-miR-3065-3p:50-72]

   c            A   A   A     ------  g  g 
cug ccucuUCAACAA AUC CUG UGCUG      GA uc c
||| |||||||||||| ||| ||| |||||      || ||  
gac ggaGAGGUUGUU UAG GAC ACGAC      cu ag c
   a            A   -   C     Ucacua  g  u 

>hsa-mir-3186 (-44.20)   [hsa-miR-3186-5p:16-37] [hsa-miR-3186-3p:53-73]

     gc        C  G     G  UA        -c     
agccu  gguuccaa AG CGUCU UC  CGUGGCUU  aacc 
|||||  |||||||| || ||||| ||  ||||||||  ||| a
ucggg  ccaagGUU UC GUAGA AG  GCACUgaa  uuga 
     ga        -  G     G  GC        ac     

>hsa-mir-3156-2 (-49.40)   [hsa-miR-3156:9-30]

      -                     A    uucac 
ugcaga agAAAGAUCUGGAAGUGGGAG CAcu     u
|||||| ||||||||||||||||||||| ||||      
augucu ucuuucuagaccuucacccuc guga     a
      c                     g    uauau 

>hsa-mir-3187 (-44.70)   [hsa-miR-3187:44-63]

          g     -gu      g    ucacc 
gcuggcccug gcagc   guggcu aagg     a
|||||||||| |||||   |||||| ||||      
cgaccggGGC CGUCG   UACCGG UUcc     u
          G     GGG      -    ucuug 

>hsa-mir-3188 (-48.60)   [hsa-miR-3188:53-75]

ggc      u      c   g    -         cc    cgc 
   gccucc gcucug ugu ccgc cagggccuc  cuag   g
   |||||| |||||| ||| |||| |||||||||  ||||    
   cggagg cGGGGC AUA GGCG GUUUCGGAG  gguc   c
-uc      u      -   -    U         -A    uuc 

>hsa-mir-3189 (-37.40)   [hsa-miR-3189:46-66]

  c  a           ugu    -u   ----    a 
gc uc guugccccauc   gccc  ggg    uagg a
|| || |||||||||||   ||||  |||    |||| u
cg ag cGAUGGGGUAG   UGGG  CCC    gucc a
  u  c           -UC    UU   cuag    u 

>hsa-mir-320e (-30.80)   [hsa-miR-320e:35-52]

        uu       c     g   
gccuucuc  cccaguu uuccu ga 
||||||||  ||||||| ||||| | g
uGGAAGAG  GGGUCGA Aaggg cu 
        UU       A     g   

>hsa-mir-3190 (-55.50)   [hsa-miR-3190-5p:47-69] [hsa-miR-3190-3p:49-70]

            g       ag    -g   c   -   c 
cuggggucaccu ucuggcc  cuac  ucc cac ggc c
|||||||||||| |||||||  ||||  ||| ||| |||  
ggccccagugGA AGACCGG  GAUG  AGG GUg cug u
            G       CA    GA   U   a   u 

>hsa-mir-3191 (-48.80)   [hsa-miR-3191:46-68]

          c        u    c    a   u ac 
ggggucaccu ucuggccg cuac uucc cac g  a
|||||||||| |||||||| |||| |||| ||| |  a
ccccagugGA AGACCGGU GAUG AGGG GUg c  g
          C        C    C    -   c gg 

>hsa-mir-3192 (-31.90)   [hsa-miR-3192:10-32]

        --uU        U  UAG   U    a   u 
ggaaggga    CUGGGAGG UG   CAG GGAA aag u
||||||||    |||||||| ||   ||| |||| |||  
ucuuccuu    gacucucc gc   guc ccuu uuu c
        ucuc        c  -ua   u    c   u 

>hsa-mir-3193 (-26.90)   [hsa-miR-3193:1-22]

      G     U   A  -    -  c 
UCCUGC UAGGA CUG GG AGUg ga g
|||||| ||||| ||| || |||| ||  
aggacg guccu gac cc uuac cu a
      a     c   -  a    u  g 

>hsa-mir-3194 (-43.00)   [hsa-miR-3194:10-30]

        gG     CCAC   G        g  c 
agguggca  GCCAG    CAG AGGGCUGc ug c
||||||||  |||||    ||| |||||||| || a
uccacugu  cgguc    guc ucucgacg gc c
        ga     acuc   g        g  c 

>hsa-mir-3195 (-57.50)   [hsa-miR-3195:11-27]

---cc      g    G  G G   GGGUU        ---a      
     gcagcc cCGC CC G CCC     ggccgcug    ccccc 
     |||||| |||| || | |||     ||||||||    |||| g
     cgucgg ggcg gg c ggg     ccggcggc    ggggc 
ggccc      g    g  g g   -----        cccc      

>hsa-mir-3196 (-35.80)   [hsa-miR-3196:10-27]

  g      C       -CA       Cccc 
gg uggggg GGGGCGG   GGGGCCU    c
|| |||||| |||||||   |||||||    a
uc acccuc cuucguc   ccccgga    g
  g      u       uua       ccgu 

>hsa-mir-3156-3 (-44.80)   [hsa-miR-3156:9-30]

      -         U           A    uucac 
ugcaga agAAAGAUC GGAAGUGGGAG CAcu     u
|||||| ||||||||| ||||||||||| ||||      
augucu ucuuucuag ccuucacccuc guga     a
      c         u           g    uauau 

>hsa-mir-3118-5 (-24.00)   [hsa-miR-3118:45-67]

     a  c  u   a           a     caca 
cacac ua aa aau uucauaaugca ucaca    a
||||| || || ||| ||||||||||| |||||    u
gugug au uU UUA AAGUAUUACGU AGUGU    c
     -  c  C   A           C     acca 

>hsa-mir-548x (-33.80)   [hsa-miR-548x:46-66]

     a   ca                     uuac 
agguu gug  aaaguaauugcaguuuuugcg    u
||||| |||  |||||||||||||||||||||    u
ucuaa cac  UUUCAUUAACGUCAAAAAUgc    u
     c   AC                     uaac 

>hsa-mir-3197 (-38.30)   [hsa-miR-3197:8-30]

           G  CA  C    A    C  g ga g 
ggcgaggGGAG CG  GG UCGG AAGG Gc c  g c
||||||||||| ||  || |||| |||| || |  |  
ucgcuccucuc gc  cc agcc uucc cg g  c u
           -  ca  u    c    u  - -a c 

>hsa-mir-3198 (-50.20)   [hsa-miR-3198:49-70]

            a      a     c   -a    u   a 
gacugugcucuc cuguuc cccag acu  gcag acc g
|||||||||||| |||||| ||||| |||  |||| |||  
cugacacgagAG GGUAAG GGGUC UGA  UGuc ugg a
            A      -     C   GG    u   c 

>hsa-mir-3199-1 (-73.90)   [hsa-miR-3199:10-32]

         -                              -  u 
ggugacucc AGGGACUGCCUUAGGAGAAAGUUucuggaa gu c
||||||||| |||||||||||||||||||||||||||||| ||  
ucacugagg ucccugacggaauccucuuucaaagaccuu ca u
         g                              a  g 

>hsa-mir-3199-2 (-72.00)   [hsa-miR-3199:10-32]

        c                              u  c 
gugacucc AGGGACUGCCUUAGGAGAAAGUUucuggaa gu a
|||||||| |||||||||||||||||||||||||||||| ||  
cacugagg ucccugacggaauccucuuucaaagaccuu ca g
        -                              -  a 

>hsa-mir-3200 (-34.50)   [hsa-miR-3200:54-75]

  u   -    g a       aa      ca    uu   uc aa 
gg ggu cgag g aucugag  ggcgca  aggu  gug  c  u
|| ||| |||| | |||||||  ||||||  ||||  |||  |   
uc ccg gcuc U UGGACUC  UCGCGU  UCCA  Cac  g  a
  -   u    G C       -A      --    --   cu ac 

>hsa-mir-3201 (-23.50)   [hsa-miR-3201:1-17]

   A    AAG             ua 
GGG UAUG   AAAAAUaagaggc  g
||| ||||   |||||||||||||  g
ccc guac   uuuuuauucuccg  a
   -    --a             uu 

>hsa-mir-514b (-38.00)   [hsa-miR-514b-5p:13-34] [hsa-miR-514b-3p:50-70]

      g      U    -     GAGG         g a 
caugug uacucU CUCA AGAGG    CAAUCAUgu u a
|||||| |||||| |||| |||||    ||||||||| |  
guacac augAGG GAGU UCUCC    GUUAguaua a u
      a      U    G     -ACA         g u 

>hsa-mir-3202-1 (-51.90)   [hsa-miR-3202:9-30]

                               -a      u 
uauuaauaUGGAAGGGAGAAGAGCUUUAAUg  uuggag c
|||||||||||||||||||||||||||||||  ||||||  
guaauuauaccuucccucuucucgaaauuac  gacuuu a
                               ga      u 

>hsa-mir-3202-2 (-46.40)   [hsa-miR-3202:8-29]

                              cucu  aa 
auuaauaUGGAAGGGAGAAGAGCUUUAAUg    ga  a
||||||||||||||||||||||||||||||    ||  u
uaauuauaccuucccucuucucgaaauuac    cu  g
                              uaac  ca 

>hsa-mir-1273d (-41.00)   [hsa-miR-1273d:10-34]

---gaa      ---GA     UGA        C       a  - aa 
      ucgcuu     ACCCA   GGUUGAGG UGCAGUg gc c  g
      ||||||     |||||   |||||||| ||||||| || |   
      agcgag     ugggu   ccgacuuc acgucac cg g  a
cuucaa      aacag     ---        -       -  u cu 

>bmo-mir-3203 (-37.45)   [bmo-miR-3203*:19-40] [bmo-miR-3203:64-85]

acu g   -a        a        AAU    U       aauuucacg 
   u uga  uucucagc UGUAUUGA   AGCU GACGUGc         g
   | |||  |||||||| ||||||||   |||| |||||||          
   a gcu  aagagucG ACAUGACU   UCGA CUGUAug         a
--c g   cg        C        GAC    -       caccaaaug 

>bmo-mir-3204a (-40.90)   [bmo-miR-3204a:28-48] [bmo-miR-3204a*:58-78]

g     -auca   -    --  u a     CGC          U        au 
 caaga     aug uaga  ca c aggcc   GUCAUAAACU CCCAUAUg  u
 |||||     ||| ||||  || | |||||   |||||||||| ||||||||   
 guucu     ugc gucu  gu g uucGG   CAGUAUUUGA GGGUAUac  u
a     gccac   u    cc  u c     AUU          -        cc 

>bmo-mir-3205 (-33.58)   [bmo-miR-3205:77-98]

------ac  -    aaacauu       -             cuuaucuauaacuaauuuau      u 
        gc ccgu       uuuguua acugcuugaguug                    guacau a
        || ||||       ||||||| |||||||||||||                    |||||| u
        cg ggcg       aGACAAU UGACGAGCUCGAC                    uaugua c
uugucucu  a    -------       C             --------------UUuauu      u 

>bmo-mir-3206 (-20.00)   [bmo-miR-3206:12-35]

a        gaUAU     -  --U    A    AAA   u   --uuuu  u 
 uaguuaac     CCAUC AG   UUGU GGUA   Uau cuc      ac a
 ||||||||     ||||| ||   |||| ||||   ||| |||      || u
 aucaauug     gguag uc   aacg cuau   gua gag      ug u
a        -----     a  uac    a    -aa   c   ucuuuu  a 

>bmo-mir-3207 (-27.90)   [bmo-miR-3207:2-22]

a     AA   ----AC      ----A     ---u   -      -caa   acaa  ga 
 GUGUG  GUG      GUAGGG     AGgcu    agu uuuagu    cgu    cu  a
 |||||  |||      ||||||     |||||    ||| ||||||    |||    ||  u
 cacgu  uac      cguccc     uucga    ucg aaguca    gcg    ga  a
g     gg   cccuaa      ccuug     uugu   c      uugg   ---g  aa 

>bmo-mir-2808d (-40.80)   [bmo-miR-2808d:85-106]

g      u  -  ac    g   uagcaa      ug u   c  aa   a  a       ggaaaug  ac 
 gaguau gc ua  acug ucc      aagcag  c ucg ag  ucu cg ccggauu       cg  c
 |||||| || ||  |||| |||      ||||||  | ||| ||  ||| || |||||||       ||   
 uucaua ug au  ugau agg      uucgUC  G GGC UC  AGA GC GGCCuag       gu  c
a      -  c  cu    a   ------      GU U   -  GA   -  -       ---aaga  ca 

>bmo-mir-3208 (-27.10)   [bmo-miR-3208:10-31]

c    --   --a    -   G  A        ---        - gu  u 
 gggu  guc   CGUC GAG AA GAGAGAGA   GAUagaga g  ac a
 ||||  |||   |||| ||| || ||||||||   |||||||| |  || c
 cucg  cag   guag uuc uu uuuuuucu   uuauuuuu c  ug g
a    ag   ggg    a   g  a        ugu        a ug  g 

>bmo-mir-3209 (-26.97)   [bmo-miR-3209:98-121]

a  aacau    -    g    - ag     -u  uu   acuauuuaauc       uuaguc 
 gc     guag cuca uguu c  cgaau  cu  ugg           gggccuc      u
 ||     |||| |||| |||| |  |||||  ||  |||           |||||||      u
 CG     UAUC GAGU GCAG G  GCuua  ga  acc           uucggag      c
c  --CCU    U    -    C GA     uc  cu   ---aaaaacuu       uaccuu 

>bmo-mir-3210 (-33.15)   [bmo-miR-3210:74-95]

g    ug    -u  acu  ua    u cau   a  c      gcaacua      aauuca 
 uggc  cucu  ga   gu  gggu g   cag gg gcuugg       ucagga      c
 ||||  ||||  ||   ||  |||| |   ||| || ||||||       ||||||       
 gccg  gagg  cu   cA  CCCA C   GUC CC CGAAUC       AGUccu      u
a    ua    uu  guc  --    - -UC   -  -      -------      ccucac 

>bmo-mir-3211 (-40.30)   [bmo-miR-3211:100-122]

a      -  -    gu   c   - ---  c     -  u    c   uuuua   u   uguu   uauu 
 acauac gg cuga  ccg gug c   gg agucg ac gacu guu     ggc acg    cga    u
 |||||| || ||||  ||| ||| |   || ||||| || |||| |||     ||| |||    |||     
 uguauG CC GACU  GGC CAC G   CC Ucagc ug uuga cga     ccg ugc    gcu    u
c      G  U    --   -   U GUU  -     c  -    c   -----   c   -uuu   ucuu 

>bmo-mir-3212 (-20.32)   [bmo-miR-3212:87-110]

u     ucacucuucguu        u  -   ---uu  -      a      c cauc       --         
 ucagg            caugaaaa gu cuu     gu cuuuga agagau g    gaauaaa  aaaaugaa 
 |||||            |||||||| || |||     || |||||| |||||| |    |||||||  ||||||| a
 agucu            guauuuuu ua gaa     CA GGAAUU UUUCUG C    UUuauuu  uuuuauug 
u     -----------u        u  u   uuuUU  U      C      U --AC       aa         

>bmo-mir-3213 (-25.40)   [bmo-miR-3213:6-30] [bmo-miR-3213*:90-115]

a      ----   - -UU   -A  GA   C       gu     ag  cc      a  --aa u 
 auugUA    CUA C   UAC  GG  AUG UCAGCuu  uucua  ua  gaaauc gu    g u
 ||||||    ||| |   |||  ||  ||| |||||||  |||||  ||  |||||| ||    |  
 uaacgu    GAU G   GUG  CC  UAU AGUcgaa  aggau  au  uuuuag cg    c g
c      aAAA   U UUU   AG  AG   -       --     cu  -a      a  gaug u 

>bmo-mir-3214 (-34.90)   [bmo-miR-3214:98-119]

a   cu  augg       c    guaguuug       --g   a  cau     au   -uuu   a  g 
 ggu  cc    ccuacau ucga        cuuucug   guc uc   cggca  gcu    aua cc a
 |||  ||    ||||||| ||||        |||||||   ||| ||   |||||  |||    ||| || u
 uca  gg    ggaugUA AGCU        GAAAGAU   UAG Ag   guugu  ugg    uau gg a
a   au  --ga       -    -------G       AGA   A  uau     cu   uacu   c  u 

>bmo-mir-3215 (-36.40)   [bmo-miR-3215:77-101]

auu     ---a au    -      -a  -    u  uu ua    -   -au         - g 
   gcagu    c  ugcg ggucgc  cg cggu cg  g  aaua aau   uuuuggaag c a
   |||||    |  |||| ||||||  || |||| ||  |  |||| |||   ||||||||| |  
   uguca    g  gcgc ccgGCG  GC GUCG GC  C  UUGU Uua   aaagccuuu g u
---     cucg cu    g      CC  U    C  -U CC    C   ccu         a c 

>bmo-mir-3216 (-31.40)   [bmo-miR-3216:83-107]

cc      -c     -c    ca   uc         u  c        aaa uug     cg 
  uuuaag  cacau  gacu  aau  guuuugcuu au uuuuuggg   g   acgga  c
  ||||||  |||||  ||||  |||  ||||||||| || ||||||||   |   |||||   
  agguuc  guGUA  CUGA  UUA  CAAAACGGA UA agaaacuc   c   ugucu  a
-a      ua     AA    --   --         C  U        --g -ua     uu 

>bmo-mir-3217 (-36.10)   [bmo-miR-3217:5-25]

u  uC       AUG            cugu           --u     uuuua    uu  c    ----cug  a 
 gc  AGAGUAU   UUUUUUGUUAuu    uuuagguugug   ugcgu     ucua  aa cgaa       cg a
 ||  |||||||   ||||||||||||    |||||||||||   |||||     ||||  || ||||       || a
 cg  ucuuaua   aagagacgguaa    gaguucaacgc   augca     agau  uu guuu       gc u
u  ca       ---            aagu           cau     -cuag    uu  c    ccuauaa  a 

>bmo-mir-3218 (-29.80)   [bmo-miR-3218:27-49]

gauccauaaua      --u     -aca   -    - A      GAG  GC   g   uau  uc   gc 
           auuuga   augag    AGU CAUA C CAGAGU   CA  Guu agg   gg  gag  a
           ||||||   |||||    ||| |||| | ||||||   ||  ||| |||   ||  |||   
           uggauu   uauuc    uca guau g gucuca   gu  cga ucc   cc  cuc  u
----------c      uau     ccag   a    c c      ---  -a   g   --u  -c   ac 

>bmo-mir-3219 (-30.96)   [bmo-miR-3219:24-47]

c  c   ccuga     uc   gG     C   UAU  C        uauuuuuuuuuaau       u uu 
 ga gau     ucagg  acc  UGAGA UAA   AU CAUGGUGU              gaucaau a  u
 || |||     |||||  |||  ||||| |||   || ||||||||              ||||||| |   
 cu cua     agucu  ugg  acucu auu   ua guaccaca              cugguua u  c
u  a   uaaga     cu   -g     a   -uu  c        -------------u       c uu 

>bmo-mir-3220 (-25.70)   [bmo-miR-3220:5-29]

----gc    CUU  C  G   GA      G      auc  a 
      guUU   UC GC CGU  CGGUUU GAaccc   gg g
      ||||   || || |||  |||||| ||||||   || g
      caag   ag cg gcg  gucggg cuuggg   cc u
cuaccu    cuc  c  -   --      g      ---  u 

>bmo-mir-3221 (-21.60)   [bmo-miR-3221:67-91]

--c   u   -   gaaa uu   u      aaa    gacaggaaaa   -     -  u 
   auc uaa cag    u  agc ucgggc   uaga          uga agcuu uc u
   ||| ||| |||    |  ||| ||||||   ||||          ||| ||||| ||  
   uag auu guu    A  UUG AGCCCG   AUCU          ACU Ucgga ag u
uca   c   a   --AG UU   C      --A    ----------   C     c  a 

>bmo-mir-3222 (-33.00)   [bmo-miR-3222:93-115]

    ---g    -gg     cua        cu       cg      uu    auuua  --ggu  u 
gcgu    gcgu   cgugg   gcuauggu  gugaauu  uuuacu  guua     gu     cc u
||||    ||||   |||||   ||||||||  |||||||  ||||||  ||||     ||     ||  
ugua    cgcg   GUAUC   UGAUACUA  CAUuuag  agguga  uaau     ca     gg c
    aaua    AAA     -UA        UU       --      --    --gug  aaauu  a 

>bmo-mir-3223 (-29.50)   [bmo-miR-3223:6-27] [bmo-miR-3223*:78-98]

acuuu    -UU   -     A   C   ca uu  --      -   a    cu 
     UACC   UUA CCUUU CCA AGA  c  gu  accuuu ucu agcc  a
     ||||   ||| ||||| ||| |||  |  ||  |||||| ||| ||||   
     gugG   AAU GGAGG GGU UCU  g  ca  uggaga agg ucgg  a
----c    UUU   A     -   C   Cg uc  gu      g   g    uu 

>bmo-mir-3224 (-74.80)   [bmo-miR-3224:30-53]

ug  g -   ag         uuacu     CA     -   UUC      --UA    gg  a     ua 
  gc c agg  gagggacgg     cccaU  UCCUG GCC   UUGCGG    GAcc  ac ccgcc  u
  || | |||  |||||||||     |||||  ||||| |||   ||||||    ||||  || |||||  c
  cg g ucc  cucccugcc     gggua  aggac cgg   aacgcc    cugg  ug ggcgg  a
-a  g c   gg         -----     ag     g   -uu      cuuc    --  c     ca 

>bmo-mir-279e (-21.99)   [bmo-miR-279e:67-88]

ua   uc      auucuaauc    guua    aaua       gau  g    caa 
  guu  gagauu         agcu    ggag    guguugc   gu uacu   u
  |||  ||||||         ||||    ||||    |||||||   || ||||   u
  caa  uucugg         UCGG    CCUC    CAUAGCG   CA GUga   u
-a   -u      --gcucgcc    ----    ---A       -AU  -    uua 

>bmo-mir-3225 (-24.40)   [bmo-miR-3225:37-59]

gaa   u    uu -g          -  c   uaaaa     A   C   UUA    AC   -u    --  u 
   agu cagu  a  uuuguugaca cu cau     UACAU UGA UGU   UAAC  Uga  uagg  cg a
   ||| ||||  |  |||||||||| || |||     ||||| ||| |||   ||||  |||  ||||  || g
   uua gucg  u  aaauaauugu ga gug     gugua acu aua   auug  gcu  guuc  gc u
---   c    uu ag          u  a   ---ua     -   u   uua    ga   uu    aa  a 

>bmo-mir-3226 (-35.40)   [bmo-miR-3226:16-39]

a    -acg    u        UUU   C G  A      uacuau    --gggu       gag 
 gaug    uagg guUCUAUU   CUA G GA CUUCUC      gacc      ucugacg   a
 ||||    |||| ||||||||   ||| | || ||||||      ||||      |||||||   u
 cuau    aucc cgggaugg   ggu u cu gagggg      cugg      gggcugc   u
-    aaaa    -        cgu   u g  -      ------    gagagu       aag 

>bmo-mir-3227 (-24.30)   [bmo-miR-3227:28-50]

-    aucu      auaa      --   ---U    ---      CA GAC     G  ccc   g   u a 
 uaaa    ggcaaa    uauagu  cau    AGCA   AUUUUU  G   GCUCG ac   aaa acg c u
 ||||    ||||||    ||||||  |||    ||||   ||||||  |   ||||| ||   ||| ||| |  
 guuu    ccguuu    auguua  gua    ucgu   ugaaaa  c   ugagu ug   uuu ugu g c
c    gaau      -gca      ag   uguu    aau      ug aau     g  --a   g   - a 

>bmo-mir-3228 (-28.40)   [bmo-miR-3228:15-39]

uauuu  gca    G GA    ---   -UU   - --U  U       u    u   -  a 
     ga   ccuu A  UCAA   AUG   GCU G   CC UGGAucu gaag ucu ga u
     ||   |||| |  ||||   |||   ||| |   || ||||||| |||| ||| ||  
     cu   ggag u  aguu   uac   cga c   gg gcuuaga cuuc aga cu u
----u  -aa    g ag    cau   ugu   g uuc  u       -    u   a  u 

>bmo-mir-3229 (-34.10)   [bmo-miR-3229:101-125]

uu       uc    uug      -gc   u    uuu   ug -----    -uuua         a  -u  c 
  caauuuu  guau   ccggua   ggg ggau   uua  a     uauc     auuucgcgg ug  ac u
  |||||||  ||||   ||||||   ||| ||||   |||  |     ||||     ||||||||| ||  ||  
  guuaagg  uauA   GGCCAU   UCC UCUA   GAU  U     augg     uagagcguc ac  ug c
-u       uu    ---      AGU   U    --U   GU ucaaa    uguaa         g  cu  u 

>bmo-mir-3230 (-30.20)   [bmo-miR-3230:17-40]

a    ug       au    ----     ----A  G    UCC      ----c     uaa    aaaa 
 ugcu  gagagaa  CAGU    AGUGA     AU GGAG   AUGUgc     gaagu   agaa    u
 ||||  |||||||  ||||    |||||     || ||||   ||||||     |||||   ||||    u
 augg  uuuucuu  guca    ucacu     ua ucuc   uauacg     cuuca   ucuu    g
c    cu       ac    uacc     gugaa  g    ---      ucaaa     cca    cugu 

>bmo-mir-3231 (-20.30)   [bmo-miR-3231:85-108]

-        ua    g u   u  cac  aua    ucu  g       --ua  acg 
 guauaggu  guuu a gua ag   ac   aguu   ua uaagcua    gc   u
 ||||||||  |||| | ||| ||   ||   ||||   || |||||||    ||    
 cAUGUCUA  UAAA U CAU UC   Ug   uuag   au guucgau    cg   u
a        UA    G -   -  CAC  --g    -uu  a       uaua  cca 

>bmo-mir-3232 (-27.50)   [bmo-miR-3232:23-47]

u    ucu u    a  ugcuuU  U       ---C         C     -  ug uuucuguau      u 
 guga   g gaca uc      CA AUUGUUU    UUAAUUAAA UGCuc au  c         ugcuca u
 ||||   | |||| ||      || |||||||    ||||||||| ||||| ||  |         |||||| u
 cacu   c uugu gg      gu ugauaga    aguuaguuu auggg ua  g         augagu g
u    --u u    -  --uucu  u       uuuc         u     a  gu --------u      u 

>bmo-mir-3233 (-23.10)   [bmo-miR-3233:16-38]

aa       uu     -----C    U   C  -UU       C    cuuauaa     u 
  ugugccu  ugguU      UUCG GUU CA   ACUCUUA uauu       uauaa c
  |||||||  |||||      |||| ||| ||   ||||||| ||||       |||||  
  gcacggg  acuag      aagu caa gu   ugggaau guaa       auauu u
-g       --     uauauu    -   a  cuu       u    --auuug     u 

>bmo-mir-3234 (-36.60)   [bmo-miR-3234:29-53]

aaaaccuaaaucgcagaauccuc    -c   UC       --G     G  AU  ---------     -a      c   c 
                       uagc  UCA  GUGCAUG   GAACG UC  CU         cguga  cggaac uga a
                       ||||  |||  |||||||   ||||| ||  ||         |||||  |||||| |||  
                       aucg  agu  uacgugc   cuugc gg  ga         gcgcu  gccuug acu u
-----------------------    ac   --       aua     -  cc  acauuaaac     cg      c   g 

>bmo-mir-2808e (-37.00)   [bmo-miR-2808e:65-86]

-      cg    u  aa   --a   gc     a a    a -  cc      gu 
 agcuca  gggc ca  ccg   agu  uucgc g aucu c ca  gggucg  a
 ||||||  |||| ||  |||   |||  ||||| | |||| | ||  ||||||   
 uugggu  ucug gu  ggu   UCA  GAGUG C UAGA G GU  cccagc  g
a      -a    u  cg   gac   AU     G C    A A  ca      gc 

>bmo-mir-3235 (-27.30)   [bmo-miR-3235:63-86]

gg  g  c     -ua   - cc   gc     ---    aga   cu 
  ca gg gguag   ccu a  cgu  ggacu   caga   ggu  u
  || || |||||   ||| |  |||  |||||   ||||   |||   
  gu CU CCAUC   GGG U  GCA  CCUgg   gucu   cca  a
-g  g  -     UCC   C CU   -A     cug    aua   cc 

>bmo-mir-3236 (-20.40)   [bmo-miR-3236:6-28]

c       AAC  GU   UU     -----------    -aa     -  u     auauucaaac      a 
 auucUAA   AA  CAU  UGUUU           GUAa   aacgu gc uugaa          cuguaa c
 |||||||   ||  |||  |||||           ||||   ||||| || |||||          ||||||  
 uaggguu   uu  gug  acaag           uauu   uugua cg gacuu          gacguu u
a       -gc  ug   --     auuauaaaauu    gua     u  u     ----------      u 

>bmo-mir-3237 (-27.90)   [bmo-miR-3237:3-26]

gaU  A    -UU     AGU     -Ccg     g  -a    uccaa        uu 
   CC UAUG   GUUUA   GGUCA    gauuc au  cuca     auguguau  c
   || ||||   |||||   |||||    ||||| ||  ||||     ||||||||   
   gg auac   cagau   uuagu    cugag ua  gagu     uacgcaua  g
--u  -    ugu     --g     aaaa     g  cg    -----        cc 

>bmo-mir-3238 (-25.20)   [bmo-miR-3238:7-31]

aaagucAAA   A  A  -----    G  U        ----      aaagagcuu ga     agg 
         UGA UC UG     CAUU AC ACAUGuuu    gccaug         g  cgccg   c
         ||| || ||     |||| || ||||||||    ||||||         |  |||||    
         acu ag ac     guag ug uguauaaa    cggugc         c  gcggu   a
--------a   -  a  auaug    a  u        auau      -------au ag     aaa 

>bmo-mir-3239 (-27.10)   [bmo-miR-3239:65-86]

auc       cu   uc   aa    gg       uu     ---a  uc 
   cguugug  aua  gau  cuuu  uuuucug  ggauc    cc  g
   |||||||  |||  |||  ||||  |||||||  |||||    ||  u
   guagcac  UAU  UUA  GAGA  AAGAGAC  ccuag    gg  u
--u       au   UU   --    AA       Uu     cuua  uc 

>bmo-mir-3241 (-22.52)   [bmo-miR-3241:17-38]

cac    --g   a -aau     GG      AC   A C     --u  c   ua   aaauu 
   uacc   cau g    AUAAA  AUCUUU  CAA G Agucu   gc uca  aua     g
   ||||   ||| |    |||||  ||||||  ||| | |||||   || |||  |||     c
   augg   gua c    uguuu  uagaaa  guu c ucaga   cg agu  uau     c
--c    aaa   a gucu     aa      --   a a     ccu  -   uc   aauaa 

>bmo-mir-3242 (-38.33)   [bmo-miR-3242:41-65]

cca      uuccauaauca   ua       ca   a   C    -----C    AUC     CAA          a 
   gaaguc           uuc  guugcuu  ggg aaC UUUG      CUUC   UUCUG   CUUguuguag g
   ||||||           |||  |||||||  ||| ||| ||||      ||||   |||||   |||||||||| u
   uuucag           aag  uaacgaa  ccc uug aaac      gaag   gaggc   gaacgacauu u
--a      -----uuucua   uc       -a   a   u    cuugac    -cc     aag          c 

>bmo-mir-3243 (-33.10)   [bmo-miR-3243:100-121]

g        ----------    uuc          uuuacggugaa     aaca        -uucua    -u    u  g 
 uaucuaaa          uguu   acgaacgacu           ggaau    ucagauua      cguc  uaua gu u
 ||||||||          ||||   ||||||||||           |||||    ||||||||      ||||  |||| || a
 guagauuu          gcgA   UGCUUGCUGA           CCUUA    GGUuugau      gcag  augu cg a
u        uuguuuuacc    ---          -----------     -CAA        uuaaag    uu    -  u 

>bmo-mir-3244 (-25.60)   [bmo-miR-3244:76-98]

cuuu      -   -   --  a  -a    c  uac        --    -uuc   a    g c 
    uuaucc cga gua  gg cg  augg ag   uuccauug  aguu    guu cugu a a
    |||||| ||| |||  || ||  |||| ||   ||||||||  ||||    ||| |||| | a
    gguggg guu cau  cc gc  uAUC UU   AAGGUAGC  UCGA    uag gaua u a
---u      c   a   ua  -  gg    -  UCU        AG    Uuuu   a    g u 

>bmo-mir-3245 (-33.80)   [bmo-miR-3245:88-110]

ga ga   -    g     uu     -       u    ucca u    -----      a 
  c  agg uguu uuccg  gguga uggugag ccag    g cgcg     ggaaga a
  |  ||| |||| |||||  ||||| ||||||| ||||    | ||||     |||||| c
  g  UCC GCAG AGGGU  UCACU AUcacuu gguu    c gugu     ccuuuu a
-a GG   U    -     --     G       -    -uca u    uuuca      c 

>bmo-mir-3246 (-45.70)   [bmo-miR-3246:20-42]

cu   -u ua  uuga        U  CA     -      CAUu      aa       u    ----       gc 
  ugu  u  ac    uauuUUGC AU  GAACA UUGUGU    cucgac  guacucg cuuu    uacuugc  g
  |||  |  ||    |||||||| ||  ||||| ||||||    ||||||  ||||||| ||||    |||||||   
  aca  g  ug    auagggcg ua  uuugu aauaca    gggcug  caugagc gaag    gugaacg  u
--   uc gc  ugua        -  uc     u      ---c      -c       u    cuac       ac 

>bmo-mir-3247 (-25.69)   [bmo-miR-3247:3-26]

uaUUA     U             U   --c  -    gaua    ca     acccuucu  uca 
     AAUUG AAAAAAGCGUGGG Ugc   gu ucag    uuau  aaaua        ac   u
     ||||| ||||||||||||| |||   || ||||    ||||  |||||        ||    
     uugau uuuuuuuguaccc acg   ca aguc    aaua  uuuau        ug   a
----g     u             c   uac  u    -auc    --     aaaauacu  ucu 

>bmo-mir-3248 (-26.50)   [bmo-miR-3248:24-46]

ga      guugg   a a   c  U    C     U  --    -   uaac   u  uc 
  gcuggu     caa c cug UG AAAU AAAUG GU  ACAC CUG    gug ca  a
  ||||||     ||| | ||| || |||| ||||| ||  |||| |||    ||| ||  u
  cgaucg     guu g gau ac uuua uuugc cg  ugug gau    cac gu  u
-g      -acua   c -   -  -    c     u  ac    c   --uc   -  uc 

>bmo-mir-3249 (-29.20)   [bmo-miR-3249:42-65]

-      --u    cu      cuaacucu   a        a  A  C  C  UU  -CUU       aac    ca 
 gagguu   gcac  gauguc        gca cgauauuu cU UG AU UG  AU    AACUAGC   ugaa  a
 ||||||   ||||  ||||||        ||| |||||||| || || || ||  ||    |||||||   ||||  c
 cuucga   ugug  cuauag        ugu gcuauaaa ga gc ug au  ug    uuggucg   auuu  a
u      ugc    --      ------cc   -        a  a  u  c  uu  cuau       auu    ca 

>bmo-mir-3250 (-52.80)   [bmo-miR-3250:73-93]

ca    a    c    a    a    a   ua    a    a         c     
  guac guac guac guac gugc gug  gugc gcac auacaguac guac 
  |||| |||| |||| |||| |||| |||  |||| |||| ||||||||| ||| a
  cgug cgug cgug cauG CAUG CAU  CACG CGUG ugugucgug caug 
-a    a    a    a    A    A   GA    A    a         a     

>bmo-mir-2807d (-82.30)   [bmo-miR-2807d:88-108]

--          a      a                          ua        g -a      c  uu   gc 
  agugcgaguu uuuaac uuuucgauagcguaaaaguuaguuca  uuuguaug a  ugggac gu  gcc  u
  |||||||||| |||||| ||||||||||||||||||||||||||  |||||||| |  |||||| ||  |||   
  ucacgcucaa aaauug aagagcuaucgcauuuuuaauCGGGU  AAACAUAC U  ACcuug cg  cgg  a
aa          a      c                          UA        G CG      u  --   ag 

>bmo-mir-3251 (-22.10)   [bmo-miR-3251:75-97]

cc   uc   - guu  ca    gg  u      --------      cauuu     uu 
  ucu  gca c   uc  gacu  uu cuucua        aggagc     auaua  c
  |||  ||| |   ||  ||||  || ||||||        ||||||     |||||   
  aga  cgU G   AG  CUGA  GA GAAGAU        uucucg     uauau  a
-u   -c   U -AU  -A    UU  C      cgaauacc      -----     uc 

>bmo-mir-3252 (-20.43)   [bmo-miR-3252:32-56]

gca    -a   ---         cacgaaaacuaUGA   AU     -A  UC      A  --a   ---c    --a  aaa 
   gcuu  guc   gucagugac              AGA  UCCGA  UA  UGAAAC au   uac    uaau   gc   a
   ||||  |||   |||||||||              |||  |||||  ||  |||||| ||   |||    ||||   ||   a
   cgaa  uag   caguuauug              ucu  agguu  au  auuuug ug   aug    auua   cg   c
--g    aa   uau         --------------   -c     ac  ua      a  aaa   ccaa    gag  aaa 

>bmo-mir-3253 (-21.60)   [bmo-miR-3253:58-80]

----------g    aau  u     u   ug     a      uaa   au         
           cuuu   ag ugugc cgu  auagu aguuga   agg  uauuuugu 
           ||||   || ||||| |||  ||||| ||||||   |||  ||||||| u
           gaaa   uc auauG GCA  UGUCA UCAAUU   UCC  AUagaauc 
aaaaaaaagaa    aau  c     -   UG     C      ---   --         

>bmo-mir-3254 (-26.50)   [bmo-miR-3254:51-71]

a   -  gc   --g    c    aac        -ua   c 
 ggc cg  cuu   uaag uucg   uucgcgau   ugu c
 ||| ||  |||   |||| ||||   ||||||||   |||  
 ccg gc  GAA   AUUC AAGC   AGGCGcug   aca g
a   c  GA   GAA    -    ---        cag   g 

>bmo-mir-3255 (-26.50)   [bmo-miR-3255:66-89]

ac         gua      u  ug cu  ug      ac   ucu      au 
  uugaaggua   gcuuug uu  c  gu  uauuau  caa   ugaugg  a
  |||||||||   |||||| ||  |  ||  ||||||  |||   ||||||  c
  aacuuucau   ugaAAU AA  G  UA  AUAAUA  GUU   acuauc  u
-a         ---      U  GU --  GU      CC   ---      gg 

>bmo-mir-3256 (-28.56)   [bmo-miR-3256:8-28]

uga      ---  U  -    --------U        --Aau   -a   ac      uccuuacg  a  ga   ca 
   aggaUG   GC CU GAUU         CCGCUUGU     ggu  ucu  agaaaa        cu ug  gcu  g
   ||||||   || || ||||         ||||||||     |||  |||  ||||||        || ||  |||   
   ucuuac   cg ga cuaa         ggugaaca     ccg  agg  uuuuuu        ga ac  cga  c
--g      aag  u  u    ccaacagau        auucc   cg   cc      -uuuaaca  -  ua   cu 

>bmo-mir-3257 (-23.90)   [bmo-miR-3257*:7-35] [bmo-miR-3257:56-78]

g    cUGG      -      UU  -      ----CA    a aaa 
 uugg    CGAUUA CGCGAU  GC CGUGAC      GAgg c   u
 ||||    |||||| ||||||  || ||||||      |||| |    
 agcc    gcuAAU GCGCUG  UG GUAUUG      cuuc g   g
a    --ag      U      -C  A      CAUaua    - cau 

>bmo-mir-3258 (-25.00)   [bmo-miR-3258:10-32]

-    g -    A    -C       U  ----G  C     aaau   a 
 auug a uuaG AAAC  ACCGCGU GG     UA GUcua    gcc c
 |||| | |||| ||||  ||||||| ||     || |||||    |||  
 uaac u gauc uuug  uggugca cc     au uaggu    cgg g
c    g c    a    uu       -  guaaa  c     cacu   c 

>bmo-mir-3259 (-21.70)   [bmo-miR-3259:83-105]

c      agc      auugagua      -  a       cu    ga   agua 
 aagaga   ucuugu        caauug ac agaaaag  cuuu  uug    c
 ||||||   ||||||        |||||| || |||||||  ||||  |||    a
 UUUUCU   AGAACA        GUUAAC Ug uuuuuuc  gaaa  aac    a
u      AAA      --------      G  a       cc    ag   aguu 

>bmo-mir-3260 (-24.40)   [bmo-miR-3260:92-115]

aug   gaua aa       aau  a       -  g a    -a     -       g a 
   caa    g  gaaguag   ga agauagu aa a ugaa  gaaaa uaaaucc c a
   |||    |  |||||||   || ||||||| || | ||||  ||||| ||||||| | u
   guU    U  UUUCAUU   UU UCUGUca uu u auuu  cuuuu auuuggg g c
--a   -GAG GC       -AG  C       c  g a    gg     c       g u 

>bmo-mir-3261 (-29.40)   [bmo-miR-3261:33-56]

ua    uccu  a     a        aaac            --G   AG   ---     a 
  auag    gc uacuu ugccauga    gUAGAAUUUAAG   AUA  GUA   GGGUa a
  ||||    || ||||| ||||||||    ||||||||||||   |||  |||   ||||| u
  uauu    cg augag augguacu    uauuuuaaauuu   uau  cau   cucau u
-c    uauu  -     -        -cga            aga   aa   uac     u 

>bmo-mir-3262 (-27.00)   [bmo-miR-3262:86-106]

u      --  g    gc    aag  --a       caag       cuaua    -aaac     acg 
 uaucug  ug guuu  uugc   uc   auacuau    cggguuu     augu     gcagc   c
 ||||||  || ||||  ||||   ||   |||||||    |||||||     ||||     |||||   a
 auaggc  ac cgga  aaug   AG   UGUGAUA    GCUCGGG     ugcg     cguug   c
c      ug  g    ga    --a  AAC       --AG       -----    aauca     aag 

>bmo-mir-3263 (-24.50)   [bmo-miR-3263:29-51]

auaauauguaua  u    c   ucuu UA C      G   -  ----U         a   u 
            ca auug gcg    g  G UGUUGA UCC CG     UGAGAAgug agg g
            || |||| |||    |  | |||||| ||| ||     ||||||||| |||  
            gu ugac cgc    u  c acgauu agg gc     auuuuuuau ucu g
-----------c  u    -   --cu gc -      g   c  ugcgu         g   u 

>bmo-mir-3264 (-28.10)   [bmo-miR-3264:102-125]

aaa     --g    ---    ua         --c      --    a    gg   a  u     gaggg 
   caacu   aaac   aaau  uuuuuuugu   guugug  gaug uugu  aag ca auauc     g
   |||||   ||||   ||||  |||||||||   ||||||  |||| ||||  ||| || |||||      
   guuga   UUUG   UUUA  GAGAGGACA   cagcgc  uuac aacg  uuu gu uaugg     u
--g     aaa    AGA    CC         CUa      uu    -    aa   g  u     gaaag 

>bmo-mir-3265 (-26.60)   [bmo-miR-3265:12-33]

gua   c    -----    A         UC UAA  ug -     g 
   gag uaag     ACUG GAGCUCGUG  U   GG  g guggc g
   ||| ||||     |||| |||||||||  |   ||  | |||||  
   cuc auuu     uggc cucggguac  g   uu  u cauug c
--a   a    aucaa    -         cu uag  gu a     a 

>bmo-mir-3266 (-40.12)   [bmo-miR-3266:5-29]

ua    G UG      CAU    ---AA      cc    -----------a   u    ---    acu u  u g 
  caUU C  AAGUUA   UGGG     GUGAga  ucgu            gcc cgca   gccc   g ga g u
  |||| |  ||||||   ||||     ||||||  ||||            ||| ||||   ||||   | || |  
  guga g  uuuagu   accc     cgcucu  agua            cgg gugu   uggg   c cu c g
-a    - gu      --c    gaaac      -c    guaaaaauacgg   u    uga    -gu -  - a 

>bmo-mir-3267a (-33.00)   [bmo-miR-3267a:69-92]

cc  cgaa         -  -  auu    auuga  u       aucc g 
  gc    gaugggugg cg gc   aagu     ug uuuugag    g c
  ||    ||||||||| || ||   ||||     || |||||||    |  
  cg    UUACCCACC GC CG   UUCG     ac aaaauuc    c a
-a  -aag         U  U  AGU    GUuag  u       --ac a 

>bmo-mir-3268 (-26.70)   [bmo-miR-3268:16-40] [bmo-miR-3268*:73-100]

aa   ac    gaa    A    ----        AG     --U  a     a     u 
  uga  aggu   uUGA GUAU    GAUUCAUU  UAGAC   Au cucgu auuau c
  |||  ||||   |||| ||||    ||||||||  |||||   || ||||| |||||  
  gcu  ucca   aACU CAUG    UUAAGUAG  GUUUG   ua gggua ugaua u
-a   --    aaa    -    GUUA        CU     UGu  a     g     a 

>bmo-mir-3269 (-26.31)   [bmo-miR-3269:105-126]

ac    c  acua   gc     uau   u  cu    u  -------      -     gc     -  a 
  gcuu cu    guu  uuugu   cag ua  gcua au       ggcaac agaug  guuau uc u
  |||| ||    |||  |||||   ||| ||  |||| ||       |||||| |||||  ||||| || a
  ugaA GA    CAA  AAACA   GUC GU  cgau ug       ucguug ucuau  caaua gg c
--    A  ----   -A     UAC   U  uu    c  acaucca      a     aa     c  a 

>bmo-mir-3270 (-43.80)   [bmo-miR-3270:12-34]

cgg     uuaU  C  -                          a   a 
   cauuc    GU UU UUUCCUAAAACGAUUCAuuuaauagg aug u
   |||||    || || |||||||||||||||||||||||||| ||| u
   guaag    ca aa aaaggauuuugcuaaguaaauuaucc uac u
--g     -ucu  a  c                          a   u 

>bmo-mir-3271 (-54.24)   [bmo-miR-3271:44-66]

-   g  g   c  ggauuuucg   g  -aa     -aca u      CAU      C C         agua 
 gcg ug auu gu         ugu gc   acaga    g gcgUGA   CAUGUG G GUGCUGCUg    a
 ||| || ||| ||         ||| ||   |||||    | ||||||   |||||| | |||||||||    c
 cgu ac uga cg         aca cg   ugucu    c cgcacu   gugcac c cacgacgac    a
g   g  g   -  ----acgga   a  aag     gaug u      uuu      - c         gaua 

>bmo-mir-3272 (-27.80)   [bmo-miR-3272:81-105]

a    -    u ug        g  u -       ucaac     uc   -ua         aua 
 uaau ucag g  aaguuugg ug c cauauuu     uaauu  uua   auuggggau   u
 |||| |||| |  |||||||| || | |||||||     |||||  |||   |||||||||   u
 guua gguc u  uucgaauu AC G GUGUAAA     AUUGA  AAU   uggcccuug   u
a    u    - gu        -  U A       --UCU     CA   ucc         aga 

>bmo-mir-3273 (-41.00)   [bmo-miR-3273:101-123]

uua       g -auuuu     ug  u           c a  ucgca  ccaucu      -aa u    a 
   auugagg u      uuuau  cu agaugggugga g gc     gc      gauguu   g gguu c
   ||||||| |      |||||  || ||||||||||| | ||     ||      ||||||   | |||| c
   ugacucu g      gaGUA  GA UCUACCCACCU C CG     ug      cuacag   c ccga g
--a       g aaucuu     UA  U           - -  -Uaaa  caacau      aug -    g 

>bmo-mir-3274 (-20.84)   [bmo-miR-3274:80-103]

cac     -au      ugaau       ucau   a   -aacu    gccaac 
   ugcau   gaugcg     guauauu    cua gaa     auug      c
   |||||   ||||||     |||||||    ||| |||     ||||       
   ACGUA   CUGCGU     CAUAUAG    gau cuu     uagc      u
--a     CCU      ----U       CUau   a   cguuu    acaucu 

>bmo-mir-3275 (-32.90)   [bmo-miR-3275:121-144]

c   -uu   ga    a  ---         guga      aa  -    -ua    a ga   acagua    ga 
 gaa   agu  uuau ca   auuaagucg    auuauc  gu uccu   ucuu g  cuu      cgag  g
 |||   |||  |||| ||   |||||||||    ||||||  || ||||   |||| |  |||      ||||   
 CUU   UCA  GAUG GU   UAGUuuagu    uaguag  ca aggg   agaa c  gag      gcuc  c
a   CCU   -G    A  UCU         --ag      gg  g    uca    g ac   guugaa    ua 

>bmo-mir-3276 (-23.50)   [bmo-miR-3276:23-45]

u    ua   c   -  u    -      U  -      G    -AA  gca     -ac    gca 
 guua  caa uga ag caau uUAUGA UG GUGUUU UGAA   GU   ggaaa   auuu   g
 ||||  ||| ||| || |||| |||||| || |||||| ||||   ||   |||||   ||||    
 cagu  guu auu uc guua gauauu ac uacaaa auuu   ca   ccuuu   uaaa   c
c    ua   u   a  -    c      u  a      g    cua  aua     guu    aau 

>bmo-mir-3277 (-30.20)   [bmo-miR-3277:14-36]

caa     ug ugUGG   U   -UC          --Uc     -----        caag   guag      ua 
   auguu  u     GCA GUU   UGAAAUUCGA    uacgu     uaauaaac    uau    uagugg  a
   |||||  |     ||| |||   ||||||||||    |||||     ||||||||    |||    ||||||   
   uacaa  g     ugu cag   gcuuugaguu    augua     auuauuug    aua    aucgcu  c
--a     gu -uuua   u   ucu          uaaa     aaggu        ----   aaga      cu 

>bmo-mir-3278 (-23.96)   [bmo-miR-3278:6-29]

ca      G      ---------UUG         A   u 
  cugUUG UGGUGU            GAUCUUACA Cau a
  |||||| ||||||            ||||||||| ||| c
  gauaac accaua            cuagaaugu gua a
-g      -      uaaagacgaaaa         a   c 

>bmo-mir-3279 (-26.60)   [bmo-miR-3279:18-41]

aauuaacacaaau    -U   UU    -A     -----A   G    --agaa  aaga   a      cu     c 
             gcuu  CUU  CAAA  UAGUC      GGU GAUa      gc    auu uuugaa  aauau a
             ||||  |||  ||||  |||||      ||| ||||      ||    ||| ||||||  ||||| a
             cgaa  gaa  guuu  aucag      uca cuau      cg    uaa gaacuu  uugua u
----------ugc    cu   gg    ca     gccuua   g    gguaca  -aaa   a      au     a 

>bmo-mir-3280 (-37.40)   [bmo-miR-3280:7-28]

u  ug  -    U       -   A   UU     uug  c      cac        c au 
 ac  cU GACA CUAGGUG GUC UGG  uuuga   aa uguauu   guuggcug g  a
 ||  || |||| ||||||| ||| |||  |||||   || ||||||   |||||||| |   
 ug  ga cugu gguccac cag auu  aaauu   uu auauag   uaacugac c  g
u  gu  a    -       u   -   -u     uca  a      --c        - aa 

>bmo-mir-3281 (-29.40)   [bmo-miR-3281:31-52]

aaagucagucgauccuaa    -aag    -     --UAU   G  ---    C U  aa         u 
                  gcuc    gaga gAUCU     GUC GU   GUGG G GU  uuuuuuugu u
                  ||||    |||| |||||     ||| ||   |||| | ||  ||||||||| u
                  cgag    uucu cuagg     cgg ca   uacc c ca  aaaaaaaua a
-----------------a    aaga    u     uggac   g  gac    a u  cc         a 

>bmo-mir-3267b (-25.40)   [bmo-miR-3267b:85-105]

---ucaacacauguc             -   -a    c    uuaa  ----cuu      ua 
               ucaaggugggugg ugg  uuau guuu    ug       augguc  c
               ||||||||||||| |||  |||| ||||    ||       ||||||   
               AGUUUUACUUAUC GCU  AGua cgaa    ac       uaccag  a
uaaaauaaaaaugac             U   CG    c    -uug  caaaagu      ug 

>bmo-mir-3282 (-26.20)   [bmo-miR-3282:7-27]

a ga    G CAU        ----     G    aaa      auua  gu 
 c  agCA U   GCGUUUUU    UUUGG gaag   ggaagg    cu  u
 |  |||| |   ||||||||    ||||| ||||   ||||||    ||  a
 g  uugu a   ugcgaaag    ggacc cuuc   cuuucc    ga  c
a ag    g -uc        ucua     a    gac      ---g  ag 

>bmo-mir-3283 (-37.40)   [bmo-miR-3283:28-51]

caa   ac  -  u   a   cag   g   CUU     -U UU     -        aau 
   guc  cc ca ccc caa   gga UUC   AACUU  C  UAAAC GAAAugau   a
   |||  || || ||| |||   ||| |||   |||||  |  ||||| ||||||||    
   cag  gg gu ggg guu   ccu aag   uugga  g  guuug cuuuacua   a
--g   ga  u  u   a   --a   g   -cc     cu uu     u        gua 

>bmo-mir-3284 (-25.10)   [bmo-miR-3284:74-98]

aca   -g        uuaauauuugu     uaag     au     a       ga 
   uuc  cgagcucc           aaggu    gacgu  uaaug uuuuauu  a
   |||  ||||||||           |||||    |||||  ||||| |||||||   
   AAG  GUUCGGGG           UUCCG    CUGCA  Guugu gaaauaa  a
--c   AA        ----------U     ----     --     a       ag 

>bmo-mir-3285 (-26.59)   [bmo-miR-3285:3-27]

aa    UC   AUA     -     U     aaauauu    -------      cg   cc   uuuuau 
  CUUA  GCU   UUCCA AUUAA GUugg       cagc       ggcucg  acg  aug      u
  ||||  |||   ||||| ||||| |||||       ||||       ||||||  |||  |||       
  gagu  ugg   aaggu uaauu cgacu       guug       ucgagc  ugu  uac      a
-a    uu   --c     g     u     aaauuau    uucuauu      -a   aa   uuucca 

>bmo-mir-3286 (-40.50)   [bmo-miR-3286*:30-52] [bmo-miR-3286:72-93]

a    -  g   auaauc     -  -aa  c         -U   U        A  -  ga 
 ugau ug cga      gaagc cc   aa AACUAUUGG  CAC GCACAGGA ua gu  a
 |||| || |||      ||||| ||   || |||||||||  ||| |||||||| || ||  a
 acug ac gcu      cuucg gg   uU UUGAUAACC  GUG CGUGUUcu au cg  c
-    u  a   --aaaa     u  gug  A         UU   -        c  a  uc 

>bmo-mir-3287 (-26.00)   [bmo-miR-3287:58-81]

-g   cc   -   guagg   ca      g  uauuucu    ugaa  a 
  agu  gca cgg     uac  ccgccu uc       gccg    gc u
  |||  ||| |||     |||  |||||| ||       ||||    || a
  uca  ugu gcC     AUG  GGUGGG AG       UGGC    cg a
ua   -a   u   ----A   -C      A  ----UUU    UUug  u 

>bmo-mir-3288 (-46.60)   [bmo-miR-3288:22-45]

ua      uu       ---     A    ---    G  -GU    U    g  g   g    a 
  gcuugc  ugagcuu   ggagU GCUU   GCUU GA   AGCU GCUU ga cuu gagu g
  ||||||  |||||||   ||||| ||||   |||| ||   |||| |||| || ||| |||| c
  ugggcg  gcuugag   ucucg ugag   cgag uu   ucga ugag uu gag uucg u
-a      -c       ugu     a    guu    g  ugu    -    g  g   g    u 

>bmo-mir-3289 (-28.30)   [bmo-miR-3289:22-46]

cuaauauaucc   uu   u      U  CG G       -    AA    gg 
           guu  gua gUGGCC UG  G GAUUACU CAGC  gaac  u
           |||  ||| |||||| ||  | ||||||| ||||  ||||   
           caa  uau cacugg gc  u uuaauga guug  uuug  c
----------a   uu   -      c  au g       a    -a    gu 

>bmo-mir-3290 (-34.50)   [bmo-miR-3290:17-39]

auc     aa    -  U    A      -UUU       Ug ccag    c  aa   guc 
   guccg  ucau ag UUGU AUUAAA    AUGAUUU  a    uagu gc  aua   g
   |||||  |||| || |||| ||||||    |||||||  |    |||| ||  |||    
   cgggc  agug uc agca ugauuu    ugcuaaa  u    auca cg  ugu   c
--a     gg    g  u    c      ugcc       gu ---a    a  gg   aaa 

>bmo-mir-3291 (-34.40)   [bmo-miR-3291:82-102]

-  uu   gg    uuuacu     -ua   ug     aaaaca    auacgcccc      -       g   u 
 gu  gug  gaaa      gaaga   agc  gggca      uuca         cuguua guguuac auu c
 ||  |||  ||||      |||||   |||  |||||      ||||         |||||| ||||||| |||  
 ca  uac  uuuu      uuucu   ucg  ccuGU      GAGU         GAUAGU CAUAAUg uga u
u  -u   uu    ----uu     uua   gu     ----GA    ---------      G       a   g 

>bmo-mir-3292 (-23.82)   [bmo-miR-3292:67-90]

a      --u -ua   uc  a      u      -   -    a  ---aauga   a 
 ucuuuu   c   cag  au uuucuu ggacgc aga aguc cg        ugg a
 ||||||   |   |||  || |||||| |||||| ||| |||| ||        ||| u
 agagag   g   guu  ug aAAGAA UCUGUG UCU UUAG GU        gcc u
a      ugu uac   ga  a      U      A   G    A  aaaaguug   a 

>bmo-mir-3293 (-26.69)   [bmo-miR-3293:22-45]

auu       c -c     ----    G  A        ----------AUA AU       aa   cacuauuca       -   a 
   auuuuga g  auagc    ggaU GU CGUGAAAA             G  UUCUAga  cuu         auucaag uga c
   ||||||| |  |||||    |||| || ||||||||             |  |||||||  |||         ||||||| |||  
   uaaaauu c  ugucg    ucua ca gcauuuuu             c  aagaucu  gaa         uaaguuc acu a
--c       u uu     gauu    a  c        auugaauuaaaag cu       --   ---------       u   u 

>bmo-mir-3294 (-36.70)   [bmo-miR-3294:59-81]

aa  -uuu   cau     gc       c   -        g  c    c   a 
  uc    uga   auauc  guguuca ggu agguauug cu gugg acu u
  ||    |||   |||||  ||||||| ||| |||||||| || |||| |||  
  ag    acu   uauag  cacaAGU CCA UCUAUGAC GA CACC uga g
-a  ugcu   --u     -a       -   A        A  -    A   u 

>bmo-mir-3295 (-23.51)   [bmo-miR-3295:82-104]

aa   cg    - u       au  ag     cu    ------- uc  c      cgcug 
  ugu  agcg g aguuguu  ac  uuuuc  ucgu       u  cg uauggg     u
  |||  |||| | |||||||  ||  |||||  ||||       |  || ||||||      
  acg  ucgC C UCAAUAA  UG  AAGAG  AGcg       a  gc auaccu     u
-c   aa    G -       AU  --     CU    cauuuuc uu  -      uaacc 

>bmo-mir-3296 (-22.70)   [bmo-miR-3296*:10-36] [bmo-miR-3296:54-78]

ug      uUUUUG      -    CU   - -   UC   ucg 
  ggcaga      AGUAUG CCCG  GUA C AAU  Cag   c
  ||||||      |||||| ||||  ||| | |||  |||    
  ccgUUU      UCGUAU GGGC  CAU G Uug  guu   c
-a      ---CUG      A    -U   C A   ga   uug 

>bmo-mir-3297 (-27.70)   [bmo-miR-3297:24-48] [bmo-miR-3297*:92-116]

uua    uaac    a  gccuaG  C    -     A        ---   gc   ccau      c    cc 
   guua    gaca uu      CA AUCU AGUCA AAAUAUUG   GAG  aaa    cuggac uggg  u
   ||||    |||| ||      || |||| ||||| ||||||||   |||  |||    |||||| ||||   
   caau    uugu ag      gu uggA UCAGU UUUAUAAC   UUC  Uuu    gaucug auuu  u
--g    ----    g  --acua  a    C     C        GUA   AA   uuuu      a    au 

>bmo-mir-3298 (-20.50)   [bmo-miR-3298:15-38]

uau  u   cuc      GAG   UG      -C   U  cg 
   cg ucc   acUGCU   GAU  CGAACA  AUG Ga  u
   || |||   ||||||   |||  ||||||  ||| ||   
   gc agg   uggcgg   cua  gcuugu  uac cu  u
--c  c   -ua      -ua   --      cu   -  uc 

>bmo-mir-3299 (-33.50)   [bmo-miR-3299:76-98]

c     a     ----  a   -         -uc        -uu    cg        
 uuaau cucga    ac ugc gacuuuaac   gaacagaa   uaug  ugugugu 
 ||||| |||||    || ||| |||||||||   ||||||||   ||||  |||||| g
 aguua gaguu    UG AUG CUGAAAUUG   CUugucuu   auau  auacacu 
u     a     aAUC  -   U         UUA        cuc    ua        

>bmo-mir-3301 (-22.20)   [bmo-miR-3301:24-47]

uaa   u u    c    uaaauU    ---U  -UA UA          Uu c  g 
   gua g guuu auua      UCGG    GA   G  ACCCGUUGAG  u uc c
   ||| | |||| ||||      ||||    ||   |  ||||||||||  | ||  
   cgu c uaaa ugau      agcc    cu   c  ugggugacuc  a ag c
--g   - u    -    ------    uaac  uag gc          uu u  g 

>bmo-mir-3302 (-29.87)   [bmo-miR-3302:14-36]

cuaaugg   ug    G  --UU    U       CAAagc   uuaca    -------       guacuu 
       ugg  uUAC AA    UCAG CUGAUUG      cug     ugcu       uccagau      g
       |||  |||| ||    |||| |||||||      |||     ||||       |||||||      c
       auu  gaug uu    aguc ggcugac      gac     acga       aggucug      g
-------   gu    g  uguu    u       -cuaau   ---ca    cacuaac       aaaaua 

>bmo-mir-3303 (-26.90)   [bmo-miR-3303:12-35]

gguuugaggagUU  A    G  ------     A     Cc      aa 
             GG UUAC CC      CUCUG CACCU  cgaugg  u
             || |||| ||      ||||| |||||  ||||||  g
             uc agug gg      gagac guggg  gcuacc  c
------------g  a    a  cuuaca     -     -a      aa 

>bmo-mir-3304a (-32.62)   [bmo-miR-3304a:103-125]

ca    cccuauuaau            cau     uuuu   ag       uuuua    --     cu 
  gucu          gauauuccaagu   uuuaa    guc  gugcauu     uaag  auugc  a
  ||||          ||||||||||||   |||||    |||  |||||||     ||||  |||||   
  caGA          UUAUAAGGUUCG   AAAUu    cag  cauguaa     guuc  uaacg  a
-a    -------CAU            -AC     uuuu   -a       --ccg    ag     ug 

>bmo-mir-3305 (-21.50)   [bmo-miR-3305:84-108]

u a  u     -cuaa     uu    aa   uu     -   -uua    a   -    u   u 
 g gc cuugu     uauuu  ugau  aau  ucgug gua    gaug aag aaua aug u
 | || |||||     |||||  ||||  |||  ||||| |||    |||| ||| |||| |||  
 c cg gaaua     guaGA  ACUG  UUA  GGUAU CAU    cuac uuc uuau uau u
g -  -     uaaag     UC    CA   UU     A   Uugc    c   a    -   u 

>bmo-mir-3306 (-21.72)   [bmo-miR-3306:105-128]

-   ---         ag c   ca        uuuu       uuauuuuu   u    accuuau 
 ggc   cgucgggau  g cga  uuauauau    ugauauu        auu uaac       u
 |||   |||||||||  | |||  ||||||||    |||||||        ||| ||||       a
 uCG   GCAGUUUUA  U GCU  AAUauaua    auuguaa        uaa auug       u
a   AGA         GA A   --        -uau       ucacauuu   c    acacuua 

>bmo-mir-3307 (-41.60)   [bmo-miR-3307:23-45]

ca        -   uguuu   u   A             AUC  Uu  cac  ca      -     aauuu 
  ugauggcg auc     aau GGU AACUGCACAUUGU   GC  cg   cg  gauguu uuggc     g
  |||||||| |||     ||| ||| |||||||||||||   ||  ||   ||  |||||| |||||      
  auuaccgu uag     uug cua uuggcguguaaua   cg  gu   gc  cugcga aaucg     g
-a        a   ---uc   c   c             ---  cu  uuu  uc      u     ccuuu 

>bmo-mir-3308 (-26.70)   [bmo-miR-3308:5-29] [bmo-miR-3308*:86-106]

a  a      A  --U    ---AA  G          uuu  g   c    ---   ga  guu 
 uc UACUUU UC   UGGU     UU GUUGUCugga   au aag gaag   gcg  cu   a
 || |||||| ||   ||||     || ||||||||||   || ||| ||||   |||  ||   a
 ag gugaaa ag   ACUA     GG UAACGGAUCu   ug uuc cuuc   ugc  ga   u
g  -      -  ucu    AAACA  G          -uc  g   -    uag   -a  aac 

>bmo-mir-3309 (-20.00)   [bmo-miR-3309:84-107]

acaauu g    a   -u     aa    cg   --u    cuu     ---cc     u 
      u gaga cac  uuaua  uauu  aca   aagg   auagg     uguag u
      | |||| |||  |||||  ||||  |||   ||||   |||||     |||||  
      g UUCU GUG  AAUAU  AUAA  Ugu   uucc   uaucc     auauc u
----cu G    C   UU     -G    UG   uuu    -cc     uugua     u 

>bmo-mir-3310 (-71.30)   [bmo-miR-3310:20-42]

a    ua   c   a   c   --     -UAA   --A  CC    u    -c         aa  -        a 
 gcgg  gac cgc ucc GCA  GCUUG    ACC   GC  CUCG gcca  acacggucg  gg cuuucucg u
 ||||  ||| ||| ||| |||  |||||    |||   ||  |||| ||||  |||||||||  || ||||||||  
 cguu  cug gcg agg cgu  ugaac    ugg   ug  gagc cggu  ugugccagc  cc gaaagagc g
a    ga   a   c   a   ag     cgcc   cca  uu    c    ua         -g  a        u 

>bmo-mir-3311 (-39.50)   [bmo-miR-3311:17-41]

aaa   --aac    aca  A   -  -A   -  AAC        --     a 
   agg     gccc   GA CUG GC  GGU CC   CUGGCGCA  uccug c
   |||     ||||   || ||| ||  ||| ||   ||||||||  ||||| c
   ucc     uggg   cu gac cg  cca gg   ggccgcgu  aggac c
--g   gcuau    ---  -   a  cc   a  --c        cu     a 

>bmo-mir-3312 (-23.20)   [bmo-miR-3312:66-88]

g     u ucu    uu     caaucuugu    u    cc    uuc 
 gccgc c   ugaa  cggga         ggga gugc  cggc   u
 ||||| |   ||||  |||||         |||| ||||  ||||   a
 ugGUG G   GCUU  GUUCU         UCCU uacg  gucg   a
g     C UUC    -C     --------U    u    -c    uac 

>bmo-mir-3314 (-47.90)   [bmo-miR-3314:93-115]

g  cau      au   aaa    u  ca   u  c        a  -  ac   c  aucc 
 gg   ggcggc  cgc   uguu gc  ugg gc ccggaacc gc cg  cuc gc    a
 ||   ||||||  |||   |||| ||  ||| || |||||||| || ||  ||| ||     
 CC   CCGCCG  GCG   ACGA CG  Acc cg gguuuugg cg gc  gag cg    c
a  --U      --   ACA    -  -C   -  c        g  c  -c   -  ccug 

>bmo-mir-3315 (-46.50)   [bmo-miR-3315:66-90]

gca   c    ugag  ua       u   g     g ug   -   -    g gag 
   ccu gggu    uc  ccgggau gga auagc u  ggg aag gaga c   g
   ||| ||||    ||  ||||||| ||| ||||| |  ||| ||| |||| |    
   gga cccg    ag  ggucCUG CCU UGUCG G  UCC UUC Uucu g   a
--c   u    ----  gc       U   -     G GU   G   A    a ggg 

>bmo-mir-3316 (-48.60)   [bmo-miR-3316:119-142]

-   u -   c   u    c   -    -gc    gca   --      a    -----       ucu     u  g 
 cgg g cga agg acgg aau cagu   cgcg   ggg  gccggu gcuu     cagcugu   auugg gc g
 ||| | ||| ||| |||| ||| ||||   ||||   |||  |||||| ||||     |||||||   ||||| || g
 GCC C GCU UCU UGUC UUA GUcg   gugu   ccu  uggucg uggg     guuggcg   ugacc ug a
u   U A   -   U    A   C    auu    --a   ag      g    agcuc       --u     u  a 

>bmo-mir-3317 (-35.31)   [bmo-miR-3317:108-132]

aau    gaa  -     -g  u        -a     aaaacucau   -  gaaauuc       ccga      ug 
   cguu   ag guuug  gc gcauuucu  agacc         ucg cg       auauaga    acggcg  a
   ||||   || |||||  || ||||||||  |||||         ||| ||       |||||||    ||||||  u
   gcag   UC CGAAU  UG UGUAAGGA  Uuugg         ggc gc       uguaucu    ugccgu  a
--u    acG  U     AG  U        CA     ---------   u  -------       cuuc      ua 

>bmo-mir-3318 (-23.06)   [bmo-miR-3318:11-34]

au   -  auc      ---U   -----U        G  -----------     -uaaaaaa      a  - aca 
  gac cu   GGAUUU    ACA      UUUUGCAU UU           GCgcu        uuagac ca g   c
  ||| ||   ||||||    |||      |||||||| ||           |||||        |||||| || |    
  cug ga   ucuaga    ugu      aaagcgua gg           cgcga        aguuug gu c   u
-u   u  ---      uguu   uaccau        g  aauaauaaauu     cuauccua      c  g ccg 

>bmo-mir-3319 (-69.04)   [bmo-miR-3319:78-101]

-ug   uc ----ga        caccgcca        c         ag     -    -  - aa 
   gcc  c      guccggca        gcggggcc gguugcugg  ugucc uggu gc c  c
   |||  |      ||||||||        |||||||| |||||||||  ||||| |||| || |  a
   cgg  g      caggccgu        UGCCUCGG CCAACGAUC  ACAgg gccg cg g  c
aug   gu aagacc        --ccuaaG        C         GA     c    g  u ac 

>bmo-mir-3321 (-33.70)   [bmo-miR-3321:67-89]

-  ac        -  c  u  a   cucac   -ccc         - u 
 cg  gggggcgg gc ug gc ucu     gcg    cgccgucuc c u
 ||  |||||||| || || || |||     |||    ||||||||| |  
 gc  CUUCCGCU CG AC UG AGA     Cgc    gugguagag g u
a  AC        A  A  -  A   -----   ucac         c u 

>bmo-mir-3322 (-24.70)   [bmo-miR-3322:72-95]

ca     c   ugug   c     ga ugu      ugu   uguaau   g 
  ggccu guu    uuc aauug  g   gguugg   guc      gcc g
  ||||| |||    ||| |||||  |   ||||||   |||      |||  
  cugGA CGG    AAG UUGGC  C   CUaacu   cag      ugg u
-c     U   -UUG   U     UG --U      --u   -ugcuu   g 

>bmo-mir-3323 (-22.50)   [bmo-miR-3323:69-91]

uga   ccc        ggcg     u  --ua    cg   a  u       auua    ca 
   gau   uuugaagg    uacuu gu    gcgu  aca uu uuuguau    gaua  u
   |||   ||||||||    ||||| ||    ||||  ||| || |||||||    ||||   
   cua   aaauuuuc    gugga ca    CGUA  UGU AA AAGCAUA    Cuau  c
caa   -ac        ---a     -  uuUC    AU   -  U       ---A    ua 

>bmo-mir-3324 (-47.20)   [bmo-miR-3324:18-41]

acu     --aa   -a    C  --U  U  -  G  UG  U   ---      ggcuuaaaaacu      u 
   ccgca    uac  gcgU CA   GA CC CU AG  CC AGG   Uggggc            cucgcc u
   |||||    |||  |||| ||   || || || ||  || |||   ||||||            ||||||  
   ggcgu    gug  cgca gu   cu gg ga uc  gg ucu   accccg            gagcgg g
--c     agcg   ga    a  uau  u  c  g  ca  c   uca      ------------      c 

>bmo-mir-3325 (-31.47)   [bmo-miR-3325:108-129]

g  aa      a     cag     ccc   -uua     gaag      caaguaa    u    accagc 
 gc  gugugu uuggc   aucac   uca    uaucu    caagua       acaa cagu      a
 ||  |||||| |||||   |||||   |||    |||||    ||||||       |||| ||||      a
 cg  CACAUA AACUG   UAGUG   agu    auagg    guucau       uguu guca      a
a  AC      -     -AG     -AC   uuaa     ---a      -------    -    aaagaa 

>bmo-mir-3326 (-26.62)   [bmo-miR-3326:12-36]

uga   ga       ---       G  CU      ---AU          uauca 
   gug  cugUAGG   UUUUGUG UU  UGUGAA     Auaaacacuu     c
   |||  |||||||   ||||||| ||  ||||||     ||||||||||     u
   cac  gacauuu   gaaacau aa  auauuu     uauuuguggg     a
--a   -g       uug       g  ag      auggu          ucauu 

>bmo-mir-3327 (-26.06)   [bmo-miR-3327:23-43] [bmo-miR-3327*:61-83]

---a  acauuuu       guauaA                   C  uauac 
    ga       ggguaau      ACAACAGGAAUGUUAUGUA ag     a
    ||       |||||||      ||||||||||||||||||| ||     g
    cu       cucauua      UGUUGUUUUUGCAAUGUAU uc     a
ucaa  ccaucau       -aaUCC                   A  uuaau 

>bmo-mir-3328 (-23.00)   [bmo-miR-3328:84-108]

ucc      --g   gga  a     a    g   aauu  u a   cu  au    c   u 
   agauug   aga   cc uggag ugua aag    ga g ucc  uc  ccaa auu u
   ||||||   |||   || ||||| |||| |||    || | |||  ||  |||| ||| a
   uuuagu   UCU   GG ACUUC ACGU UUU    cu c agg  ag  gguu uaa g
--u      aUA   AAG  -     -    G   -GUu  u -   uu  --    -   a 

>bmo-mir-3329 (-27.70)   [bmo-miR-3329:84-106]

cc     -a      -c      u     -a    --a   - g      uuaa     
  caauc  uuauga  uauugu guguu  gggc   aug a ucacau    aauu 
  |||||  ||||||  |||||| |||||  ||||   ||| | ||||||    ||| u
  guUAG  AGUAUU  AUAACA UACGg  cccg   uac u ggugua    uuau 
-u     AC      UA      -     ac    aag   a g      ugag     

>bmo-mir-3330 (-25.90)   [bmo-miR-3330:68-91]

uu      -ccc  uc   c ac     a  --g   c  c  -----uu      u 
  ucagua    ca  ucg g  gcgcu uc   acg gu ac       ucgggg g
  ||||||    ||  ||| |  ||||| ||   ||| || ||       ||||||  
  gguuau    gu  AGC C  CGCGA AG   UGC CA ug       aguucc u
-u      ccuu  ua   A CU     A  UGA   -  U  uaugucu      c 

>bmo-mir-3332 (-39.09)   [bmo-miR-3332:55-79]

c  u  cc      ag   --gcaaccu   cu     -  -a         u 
 ac ga  ccgcuc  cga         ggc  cggug cg  gcgaggagg c
 || ||  ||||||  |||         |||  ||||| ||  |||||||||  
 ug cu  ggcgag  gcu         UCG  GCCAC GU  CGCUCCUuu g
a  c  ac      --   acuaccACU   CC     C  AC         a 

>bmo-mir-3333 (-34.00)   [bmo-miR-3333:15-38]

aua a   acc  cC -        AG   GA -AA   Gcca  ug  aa      a      -c   aa 
   c ggu   gu  C GUUCGAGA  CAA  C   AGU    ga  uc  aucgcg cggcac  guc  a
   | |||   ||  | ||||||||  |||  |   |||    ||  ||  |||||| ||||||  |||  u
   g ccg   ca  g caagcuuu  guu  g   uca    cu  ag  uggugc guugug  cag  c
--g c   -cc  cu a        -g   ag caa   aaaa  ua  aa      c      cc   cg 

>bmo-mir-3334 (-35.20)   [bmo-miR-3334:30-53]

cguu  ugcu   cu    ucccuc    -   ACC     GA     G  -    g   c   u  -  uu    c 
    gc    cuu  aguu      cacg UGA   AGAAU  UGGAA GA CAGg cgg agg gc uc  cguc g
    ||    |||  ||||      |||| |||   |||||  ||||| || |||| ||| ||| || ||  ||||  
    cg    gaa  ucga      gugc acu   ucuug  accuu uu guuu guu ucc ug ag  gcag a
-uuu  uuau   -c    -----u    u   ---     -g     g  a    g   -   u  u  cu    c 

>bmo-mir-3335 (-23.50)   [bmo-miR-3335:17-40]

aa    u  aauu    G  C  --   C  --U        C    u  uu   ---au     g 
  gucg cg    auaU AG CG  UGU CG   ACCGCUUU Aggu gg  aca     aagca u
  |||| ||    |||| || ||  ||| ||   |||||||| |||| ||  |||     ||||| u
  uagc gc    uaua uc gc  aua gu   uggugaaa uuua cc  ugu     uuugu a
--    u  -aac    a  u  cu   a  ucu        a    -  -u   aauau     a 

>bmo-mir-3336 (-26.60)   [bmo-miR-3336:59-81]

cu     aa   -  ag  a     ug     uccg      cc 
  ugcuu  ggc au  ac cagcu  ggggu    ucgcgu  u
  |||||  ||| ||  || |||||  |||||    ||||||  u
  acgGA  CCG UA  UG GUUGG  UCUua    agcgca  a
-u     -G   C  -G  C     UG     --ca      ca 

>bmo-mir-3337 (-39.34)   [bmo-miR-3337:14-36]

gag     u     CCA    C    U    --C  -    gu c    ----cuauu  g 
   caccu cgccU   UAUC GUGC CGGA   GC UUgg  g gacu         gc a
   ||||| |||||   |||| |||| ||||   || ||||  | ||||         || u
   gugga gcggg   auag uacg gcuu   cg aacc  u cuga         cg g
--a     c     uac    c    c    cuc  g    ug -    ccacuuccu  u 

>bmo-mir-3338 (-33.40)   [bmo-miR-3338*:26-46] [bmo-miR-3338:66-87]

acc    ga  au    c  c   a        C     U     A   uaaa  c 
   aagu  ca  agag gu uca AGCAAACA AGUAG GUGCA ugc    gu c
   ||||  ||  |||| || ||| |||||||| ||||| ||||| |||    ||  
   uucg  gu  ucuc ca agU UUGUUUGU UCAUU CAUGU Acg    ca u
--c    -a  au    a  u   C        U     -     -   --ug  a 

>bmo-mir-3339 (-20.10)   [bmo-miR-3339:8-30]

ugguuuuUA   --       -AU         --gc   ---     ug 
         GAC  UUUUUAG   GUUGGUCAA    ucg   ugauc  u
         |||  |||||||   |||||||||    |||   |||||  g
         cug  aaagauu   uagccaguu    agc   acuag  u
--------c   uu       aau         guac   cuu     cc 

>bmo-mir-3340 (-22.80)   [bmo-miR-3340:48-72]

g    gucu   -g    c   -    gaggg    g  a 
 cagu    cga  guca ugc uccg     guuu uc g
 ||||    |||  |||| ||| ||||     |||| ||  
 gUCG    GCU  CAGU GCG AGGC     Uaga gg g
g    ----   AG    A   U    --AUA    g  a 

>bmo-mir-3342 (-59.40)   [bmo-miR-3342:28-51]

a    auuu          cuu  cacUGA    -    A    U   G CC    aaac     a 
 ucag    ggcgguggcu   gc      CCAU GGUG CGAG CGA C  cccg    gccuc c
 ||||    ||||||||||   ||      |||| |||| |||| ||| |  ||||    ||||| a
 aguc    cugccgccga   cg      ggua ccac gcuc gcu g  gggc    uggag a
a    ----          -au  --cuag    g    -    -   g ua    ---c     u 

>bmo-mir-3343 (-30.11)   [bmo-miR-3343:15-38]

gacuccuu     uUCU  AU   U      CC   -------  u   -      au g 
        ggcaa    CC  CGU CCUGCA  GUA       GC ccc uuguau  c g
        |||||    ||  ||| ||||||  |||       || ||| ||||||  | a
        cuguu    gg  gca gggcgu  cgu       cg ggg aacaug  g c
-------u     ---c  cc   c      ua   uccuucc  u   c      cu a 

>bmo-mir-3344 (-22.94)   [bmo-miR-3344:15-39]

aaauc   gaccuaUU   AGA      ----------C    A      u 
     guu        GCA   AGGACU           AGCC GCGAGu g
     |||        |||   ||||||           |||| ||||||  
     cga        ugu   uccuga           ucgg ugcucg u
----u   --aagcuu   --g      ccgaauacacc    c      c 

>bmo-mir-3345 (-40.30)   [bmo-miR-3345:11-33]

-  au   a  U      ---A       CGC          -g    cuuc      u 
 cu  gcc au AUCGUU    CGCGCGU   UUAGGcggga  ugga    gcguug a
 ||  ||| || ||||||    |||||||   ||||||||||  ||||    ||||||  
 gg  cgg ug uagcag    gugcgua   aguuugucuu  gccu    cgcagc g
a  cc   a  c      aagg       ---          aa    ---a      a 

>bmo-mir-3347a (-43.00)   [bmo-miR-3347a:102-126]

gc     uuuau ua     ---g      cu  ucu u     -        ggcgguauua       -c    -  ua 
  ggaga     c  aacuu    ugggac  gu   g uuagu auguaugc          augagcu  ugcc ca  g
  |||||     |  |||||    ||||||  ||   | ||||| ||||||||          |||||||  |||| ||  c
  ccucu     g  uuggg    ACUCUG  CG   C AGUUA UACAUgcg          uacucgg  augg gu  a
-c     ----u uc     aucA      -U  -UU U     C        --------ag       ua    c  uc 

>bmo-mir-3348 (-27.30)   [bmo-miR-3348:45-65]

cac    aa  c    c   cac   c  cccc    c 
   gcgu  uc ccgg gag   cuc gc    gggu u
   ||||  || |||| |||   ||| ||    |||| c
   cgua  AG GGCC CUC   GAG CG    CCcg a
--a    CG  C    -   --C   -  ---A    g 

>bmo-mir-3350 (-22.09)   [bmo-miR-3350:90-114]

-   --g     agauuuau   aa   a   u        uc       -c       uuaa  ug   g 
 uac   uacaa        uaa  aua aaa aagaauug  auacaug  auguguu    au  ucg u
 |||   |||||        |||  ||| ||| ||||||||  |||||||  |||||||    ||  ||| a
 aug   auguu        auu  uAU UUU UUUUUAAU  UAUGUAC  uguauaa    ua  ggc g
u   uua     auauuuau   cg   A   C        CU       Uu       -uaa  gu   u 

>bmo-mir-3351 (-21.70)   [bmo-miR-3351:10-32]

-    --cgcau     -    --G  --U      G   --gcc   a 
 guag       UUACG UUGU   GA   GUCUAU GGC     agu a
 ||||       ||||| ||||   ||   |||||| |||     |||  
 cauc       agugc aaca   uu   cgggug ucg     uca c
u    uuuuauu     u    aaa  ugu      g   acaau   u 

>bmo-mir-3352 (-26.00)   [bmo-miR-3352:72-94]

-ua      --c c   c agu   uca     uauaa           u  uu     u 
   cuacgg   g cac g   cga   agaau     agaagauuaau gu  ucaaa a
   ||||||   | ||| |   |||   |||||     ||||||||||| ||  |||||  
   gauguc   c gug C   GUU   UCUUG     UCUUCUGGUua ua  gguuu u
cga      aau u   U -GU   -UA     -----           -  uu     u 

>bmo-mir-3353 (-27.70)   [bmo-miR-3353:31-53]

a ga           a   uuucccaagau    -AUA       A   A     --   - aa 
 g  agucaggcucu uuu           UCAG    AUUUUUA ACC AAGUu  cga c  g
 |  ||||||||||| |||           ||||    ||||||| ||| |||||  ||| |  u
 c  uuaguuugaga aaa           aguc    uaaaaau ugg uucgg  gcu g  u
a ac           c   ----------u    aaug       g   a     uc   u gg 

>bmo-mir-2733j (-34.10)   [bmo-miR-2733j:23-45]

----cuucuauauc        au  A        A U      U    -u     
              ucucucua  gc GUCAUCAU C CUCAGU GAUA  gugu 
              ||||||||  || |||||||| | |||||| ||||  ||| a
              agagagau  ug uaguagua g ggguca cuau  uaca 
cgcacuacacuacu        gg  c        c u      -    cu     

>bmo-mir-2733b-2 (-34.47)   [bmo-miR-2733b:11-32]

---uaa  uu -     -   G U CG          --------------  u      uu      aacgcc 
      ca  c uaUCA CUG G G  UGAUGAUUGU              gg agagau  ucacau      a
      ||  | ||||| ||| | |  ||||||||||              || ||||||  ||||||       
      gu  g auagu gac c c  acuacugacg              cc ucucua  agugua      c
cuuaca  uu u     u   a u au          uaaugucucucugu  -      -c      cacuac 

>bmo-mir-3354 (-27.60)   [bmo-miR-3354:69-92]

-   g  g  cagca  uu      g au  cc   g  u    u    ua 
 gaa uc uu     gu  cugugu u  ug  aac ug cagg ugcu  u
 ||| || ||     ||  |||||| |  ||  ||| || |||| ||||   
 cuu GG GA     CA  GACACG A  AC  Uug ac guuc gcga  u
a   g  G  -----  UU      G CU  AC   g  -    u    uu 

>bmo-mir-3355 (-26.60)   [bmo-miR-3355:94-116]

--  g a    uauu  g   agag   a   uuaaa       a    -c    --      u    caaa u   a 
  ga a ucuc    au agg    uuc guu     auuugaa cuuu  agua  gaauuu acag    c ucg u
  || | ||||    || |||    ||| |||     ||||||| ||||  ||||  |||||| ||||    | |||  
  cu u agag    ug ucc    agg cgA     UGAACUU GAAA  UCAU  Uuuaaa uguu    g agc g
ua  g a    uuuu  g   -gaa   a   ----C       G    UA    AA      u    --ac c   g 

>bmo-mir-3356 (-35.75)   [bmo-miR-3356:82-104]

ua                 u   auc        aaaaau    auu   g      caaacccgc 
  uuguuuuuuuuuucuuc aua   gaacccgc      ugaa   agc uaaaau         a
  ||||||||||||||||| |||   ||||||||      ||||   ||| ||||||          
  ggcaggaaagaaagaag ugu   CUUGGGUG      ACUU   UCG AUuuug         a
-c                 u   -GC        ---GCC    ---   A      uaauuauaa 

>bmo-mir-3357 (-27.31)   [bmo-miR-3357:55-77]

a   -  -------    g   -    uc    u    --u   guucu    c a 
 cga ca       auga cga ccgg  ggag ggua   ggc     aacc g c
 ||| ||       |||| ||| ||||  |||| ||||   |||     |||| | a
 gcu gu       uacu gcu GGUC  CCUC CCAU   CUG     Uugg c a
a   c  cccucuc    -   u    --    U    UUU   --GUC    u c 

>bmo-mir-3358 (-40.50)   [bmo-miR-3358:13-37]

c  u gg  a u  UU U   UC  C       --C             g 
 ga g  ua a AU  G UAA  CU CUCCGUG   GUCacgauccuca u
 || |  || | ||  | |||  || |||||||   |||||||||||||  
 cu c  gu u ug  u guu  ga gaggcau   cagugcugggagu g
a  c uu  a c  gg u   uu  c       uuc             c 

>bmo-mir-3359 (-48.20)   [bmo-miR-3359:5-29]

aca      -UA   ------   AAC          -  a ug   ------  c    g 
   gUGCGG   UCC      GUG   CGCCCUGACc gc a  gcg      cg ugcg a
   ||||||   |||      |||   |||||||||| || |  |||      || |||| u
   caugcc   agg      cac   gcgggacugg cg u  ugc      gc acgc g
--a      ccc   guaaac   ggu          g  c gu   agagua  a    u 

>bmo-mir-3360 (-23.83)   [bmo-miR-3360:73-97]

c     cua g     --      g        a     au       cccuauu 
 uauua   g auuug  cauuuu auaauuau ugaaa  agcugcu       a
 |||||   | |||||  |||||| |||||||| |||||  |||||||       c
 auaau   u uaAAC  GUAAAG UAUUAAUG GCUUU  uugacga       a
a     aca g     UU      G        -     ac       uucuuuu 

>bmo-mir-3361 (-30.00)   [bmo-miR-3361:21-44]

aag    cacuccaa     UG     UUU      C   C  G  uau  a    ucg    ca u   a 
   ucgc        agcau  ACUAG   GCGUGU AAA UC ga   cc cguc   ucac  g aac a
   ||||        |||||  |||||   |||||| ||| || ||   || ||||   ||||  | ||| c
   agcg        uugua  ugauc   ugcaua uuu ag cu   gg guag   agug  c uug g
--g    ----acuc     --     --u      -   a  g  ---  -    -ua    -c -   c 

>bmo-mir-3362 (-26.30)   [bmo-miR-3362:17-41]

aagcc        u   GA        ----    -      U     ccg   -  cug 
     guuuguga gcU  UUUGAAGU    UUAU GAAUGU GUAgc   gug gc   g
     |||||||| |||  ||||||||    |||| |||||| |||||   ||| ||    
     cagauauu ugg  gaauuuua    aaua uuuaua caucg   uac cg   u
----a        u   -a        ucuu    a      u     uag   a  ucu 

>bmo-mir-3363 (-22.00)   [bmo-miR-3363:68-92]

uc     uu   u  --acugu -ua    ----u      uaaa       aa   -      cu 
  aaaug  aag uc       g   uccc     uguagu    auaaaua  uau aauaac  u
  |||||  ||| ||       |   ||||     ||||||    |||||||  ||| ||||||   
  uuuac  uuc ag       c   aggg     GCGUCA    UGUUUAU  AUA Uuauug  u
-u     cc   u  aauuuuu uua    caUUU      --UG       GC   C      ua 

>bmo-mir-3364 (-29.90)   [bmo-miR-3364:4-27]

g     CG   CU    --C     -----UAA    a    c       --g  a 
 cuUUC  UGA  AUCA   UUCCA        Uuuc cgac ccauaug   ca u
 |||||  |||  ||||   |||||        |||| |||| |||||||   || a
 gaaag  gcu  uagu   gaggu        aaag gcug gguaugc   gu a
g     ag   -u    cac     ugccaaag    c    a       uua  a 

>bmo-mir-3365 (-28.40)   [bmo-miR-3365:71-91]

caa    a   uua aua   a   g    u   ucaa       ag   acg    g 
   uggc cca   g   cug ugc ugug uag    uuaguca  aua   gugc u
   |||| |||   |   ||| ||| |||| |||    |||||||  |||   |||| c
   gcug ggu   c   gac ACG ACAC AUC    GAUCAGU  uau   uacg u
--a    -   --- -gg   A   -    C   --UA       -a   ---    g 

>bmo-mir-3366 (-33.80)   [bmo-miR-3366:91-114]

a   --aa   --  c       aa  gau         --     --         aauac   uc 
 aga    agc  gu uuaacca  cu   guacuagaa  aacaa  guuuuggua     agu  c
 |||    |||  || |||||||  ||   |||||||||  |||||  |||||||||     |||   
 ucu    ucg  CA GGUUGGU  GA   UAUGAUuuu  uuguu  caaagccau     ucg  c
c   guac   AU  U       GG  -AG         ac     aa         --ccc   uu 

>bmo-mir-3367 (-21.60)   [bmo-miR-3367:72-95]

aaa          ucuu     uauuuuc       c   -----   gu    ua 
   guuaauguua    gugca       uuaucua gca     uuu  cauu  a
   ||||||||||    |||||       ||||||| |||     |||  ||||   
   cgaUUAUAGU    CGCGU       AGUGGGU Ugu     aaa  guag  a
--c          ----     ----CGC       U   uugac   ug    ua 

>bmo-mir-3368 (-29.30)   [bmo-miR-3368:15-36]

aua  ------g   -     -----  --A       A   A  AAG   a     -ca u      c 
   cc       ucg ccgcu     UC   GUCUUUU GAG AG   UGg aggcg   g gauaug u
   ||       ||| |||||     ||   ||||||| ||| ||   ||| |||||   | ||||||  
   gg       agc ggcga     ag   uagaaaa cuu uc   acc uuugu   c cuauac u
--a  acuguaa   c     aauca  guu       -   a  --g   a     uaa u      u 

>bmo-mir-3369 (-29.40)   [bmo-miR-3369:77-99]

u   gg    -----ggg      auga      a  a   ag       uuu  cg   a g 
 gcu  uggc        ugaaaa    gaucua uu uaa  aguauug   ug  gcc a a
 |||  ||||        ||||||    |||||| || |||  |||||||   ||  ||| |  
 cga  acug        ACUUUU    CUAGAU GA AUU  Ucguggc   ac  ugg u a
g   aa    ggguuuaa      ---G      A  C   CA       --u  -a   a a 

>bmo-mir-3267c (-27.30)   [bmo-miR-3267c:52-73]

---------cauuuac   g      ucu      ---      aa      aa 
                guu uagaug   augggc   uucagu  ccacuu  c
                ||| ||||||   ||||||   ||||||  ||||||   
                caa aUCUAC   UACCUG   GAGUCA  Ggugga  a
cuaauaaaauaaauaa   -      --U      CUC      --      cc 

>bmo-mir-3370 (-31.00)   [bmo-miR-3370:98-121]

ucg       a   aaac    u a    ca    gcuu   -   c        acu   uuuca    -  a 
   ucagauu uag    agau u ucag  acau    ugu caa uguacaau   uac     gcug ca g
   ||||||| |||    |||| | ||||  ||||    ||| ||| ||||||||   |||     |||| || c
   agucuaa auc    ucUG A AGUU  UGUA    ACA GUU AUauguua   aug     cgac gu g
--a       a   --gu    C A    -C    ----   U   C        ---   uuuua    u  u 

>bmo-mir-3371 (-30.20)   [bmo-miR-3371:29-51]

gaa    auuu     -cua       ---ca  C  A        AUA    C  a    a 
   uuga    cucau    ccaugca     UG AU AUAACAAC   UACG Au gcca a
   ||||    |||||    |||||||     || || ||||||||   |||| || ||||  
   aauu    gagug    gguaugu     ac ug uauuguug   augc ua cggu g
--g    gagu     acca       aauua  a  a        -ca    -  -    c 

>bmo-mir-3372 (-22.70)   [bmo-miR-3372*:13-41] [bmo-miR-3372:73-95]

aac     u    UUAUU   UU       UC  A  -     gauuuu   u 
   ucauu guuU     AUG  CUUGGCG  AG GC CAAAu      uug u
   ||||| ||||     |||  |||||||  || || |||||      |||  
   AGUAA CGAA     UAU  GAACCGC  uc cg guuua      aac u
--c     -    --UUU   -C       ua  -  a     ----au   a 

>bmo-mir-3373 (-42.50)   [bmo-miR-3373:15-37] [bmo-miR-3373*:111-134]

aua  --ug    --auaU   C  -A   C    -  -   -A   --cc  caa  uca   a       -a   cc  g 
   gg    agca      AGC GC  GAA UGUU CG GGC  Ugc    cu   cc   gca uucgaca  gug  uc u
   ||    ||||      ||| ||  ||| |||| || |||  |||    ||   ||   ||| |||||||  |||  ||  
   cc    ucgu      UCG CG  CUU ACAG GC CCG  acg    ga   gg   cgu aagcugu  cac  ag g
--a  ccua    ccuuCU   A  CC   -    U  A   cc   aucu  agc  uuc   -       ga   --  a 

>bmo-mir-3374 (-21.00)   [bmo-miR-3374*:12-38] [bmo-miR-3374:57-79]

uugacagcc     A A   -AC      UU   AGG    aa  g 
         guUGA G UGC   CAGAUG  GAG   CCug  ug a
         ||||| | |||   ||||||  |||   ||||  ||  
         CAACU C ACG   GUUUAU  UUC   ggac  gc a
--------a     - -   CUC      --   GUa    -c  a 

>bmo-mir-3375 (-24.99)   [bmo-miR-3375*:23-44] [bmo-miR-3375:63-87]

u      ---       uccccagc    UGUGU    C   UU  U    c   ua 
 guguuu   guucagg        UCCA     AAUU UUC  GG uagu gag  a
 ||||||   |||||||        ||||     |||| |||  || |||| |||  g
 uacgag   caagucc        AGGU     UUGA AAG  UC AUCG cuu  c
g      aac       uucaaAUA    -----    A   UU  U    U   gg 

>bmo-mir-3377 (-21.50)   [bmo-miR-3377:16-36] [bmo-miR-3377*:52-76]

cu  gg   uu aaaU   G       GUC     ---     a 
  gg  aua  u    GAA UUAUGAA   AGGAU   Acgua a
  ||  |||  |    ||| |||||||   |||||   |||||  
  cc  uGU  A    CUU GAUACUU   UCCUA   ugcau u
-g  aa   UU -GUU   G       ---     Uuc     u 

>bmo-mir-3378 (-26.70)   [bmo-miR-3378:10-33] [bmo-miR-3378*:60-84]

gu   uaucU    U U    C     U  -UUCg       c u 
  ccu     UCCA G UGAU GGGGC GC     cucgcgu g c
  |||     |||| | |||| ||||| ||     ||||||| |  
  gga     AGGU C GUUA CCUCG CG     gggugca c c
--   cGCAC    - U    A     U  UUcua       c u 

>bmo-mir-3379 (-56.20)   [bmo-miR-3379*:37-57] [bmo-miR-3379:71-91]

u         c -uu    c   cc   uu     -      C    C   -A  U   --      uu 
 gauccgucg g   gacg guu  gcg  acgcg uuCGUA UCGU GUU  CG GUU  Guuuua  u
 ||||||||| |   |||| |||  |||  ||||| |||||| |||| |||  || |||  ||||||   
 cuaggcagc c   cugc cga  cgc  ugcgc aagcau AGCA CAG  GC CAG  UAAAau  a
u         - ucu    u   -u   uu     u      u    U   AA  -   UC      ua 

>bmo-mir-3381 (-22.10)   [bmo-miR-3381:5-28] [bmo-miR-3381*:63-82]

gag   AA   U  -   CAA    ----UC     cc  gga  a    a 
   aUC  GAU CC UCG   AGGU      ACucc  ca   uc uucg u
   |||  ||| || |||   ||||      |||||  ||   || ||||  
   uag  cug gG AGC   UCCA      UGagg  gu   ag aagc g
--a   aa   c  U   CGG    UACUUA     aa  ---  -    c 

>bmo-mir-3382 (-40.60)   [bmo-miR-3382:18-40] [bmo-miR-3382*:86-110]

u    g   uu    - --      UU  GU  U     UC  gc   uc   ga cuc         
 ccgc ucg  gccu c  uUCAAG  UU  GU CUGGG  GU  cgg  gcg  g   ucguaugu 
 |||| |||  |||| |  ||||||  ||  || |||||  ||  |||  |||  |   ||||||| u
 ggug agc  ugga g  AAGUUC  AG  CA GGCCU  CG  guc  cgc  c   agcaugcu 
c    -   -u    c CC      UU  GU  -     -C  Uu   uu   ug ---         

>bmo-mir-3383 (-27.70)   [bmo-miR-3383*:7-30] [bmo-miR-3383:54-77]

--  a       CUGAG        CCAU  U    u    c 
  ga auaGUGC     GGCUUCGU    GU cgcg cggc g
  || |||||||     ||||||||    || |||| ||||  
  CU UGUCGCG     UUGAAGCA    Cg gugc gcug u
uU  C       --CAG        ---C  u    -    c 

>bmo-mir-3384 (-45.20)   [bmo-miR-3384*:2-25] [bmo-miR-3384:96-120]

aU     -  -   C    U     --U         --  u       ----       c   --u u u 
  GAAAU GU GUC UCUA CCGGC   Cgaauggac  ca gaaaugu    acacgac cgg   c g a
  ||||| || ||| |||| |||||   |||||||||  || |||||||    ||||||| |||   | | u
  cuuug cg cAG AGAU GGUCG   GUUUGUCUG  gu uuuuaua    ugugcug gcc   g c g
-u     u  g   A    -     CGU         Uc  c       auaa       a   uuu u g 

>bmo-mir-3385 (-22.02)   [bmo-miR-3385*:12-33] [bmo-miR-3385:97-120]

uua -      -    AA   -UU  CU       Auauc      -ccccua    auau  aaca 
   g uuuugc aUGC  ACC   AC  UCAAAGG     cacugu       agag    gc    u
   | |||||| ||||  |||   ||  |||||||     ||||||       ||||    ||     
   c GAGAUG UAUG  UGG   UG  AGUuucu     guggca       uuuc    cg    u
--a u      G    --   UUU  UC       -----      cacaaac    accu  aaua 

>bmo-mir-3386 (-39.99)   [bmo-miR-3386:34-58] [bmo-miR-3386*:101-124]

-     gaaaaauuauuaaugag    gu      ------    AAC     ----CUC       -CCauuu    uua        g 
 gaucu                 ggca  acggaU      ACCU   CAGUU       UGGUAUG       gaau   ugguccug c
 |||||                 ||||  ||||||      ||||   |||||       |||||||       ||||   ||||||||  
 cuagg                 ccgu  ugcuua      ugGA   GUCGA       ACCAUAU       uuua   accaggac g
u     ----------------a    --      auuuau    ---     AUUAUUU       AAUuuau    uug        g 

>bmo-mir-3387 (-24.50)   [bmo-miR-3387*:23-43] [bmo-miR-3387:107-129]

uug   ccuu   u   -   --ca      A  AAA    U G    --cua   uuaa  cc  u   a    u  u 
   cug    ugu gac uaa    ACAUUA UG   ACGA C UGga     ccu    cg  ga auu caag gc a
   |||    ||| ||| |||    |||||| ||   |||| | ||||     |||    ||  || ||| |||| || a
   gau    aca cug guu    UGUAAU AC   UGCU G ACUU     gga    gc  uu uag guuu cg u
-aa   -aau   u   u   uUCG      -  --G    U G    uuaac   caac  -a  u   a    -  u 

>bmo-mir-3388 (-44.20)   [bmo-miR-3388*:17-44] [bmo-miR-3388:100-123]

uua       a    gACA     AACAUG  UU  -    UUCA        ---   ---a    uca  gg c 
   ucuucgc cgcu    AGUCA      CC  GG CCCA    cggcaguu   cuu    cgca   gu  c a
   ||||||| ||||    |||||      ||  || ||||    ||||||||   |||    ||||   ||  | a
   ggaggug gcgA    UCAGU      GG  CC GGGU    GCUgucga   gag    gcgu   cg  g a
--c       a    ---G     -----A  -U  A    -UAC        uuu   caac    -ug  aa c 

>bmo-mir-3389 (-54.20)   [bmo-miR-3389:34-56] [bmo-miR-3389*:73-93]

a    accc   a  acgcc    agga   a    U   -  A      ACA       gccca 
 gggg    cga ug     ccgc    ccc gUCG AGC CG UGUUCC   GCAGggg     g
 ||||    ||| ||     ||||    ||| |||| ||| || ||||||   |||||||      
 cccc    gcu ac     ggcg    ggg caGC UCG GC ACAAGG   CGUCCCc     g
a    ----   -  ---aa    -aag   -    -   C  C      ---       agaca 

>bmo-mir-2733i (-39.30)   [bmo-miR-2733i*:28-48] [bmo-miR-2733i:61-82]

----ac  u  c   a u       aau      UG    -    U   A     uua 
      gu gu uac g gucuguu   aauAGU  UUAC UUCC CAG UGAca   u
      || || ||| | |||||||   ||||||  |||| |||| ||| |||||    
      cg ca aug c cagacaa   uUAUCA  AAUG AAGG GUC ACUgu   a
gccaaa  u  -   - -       cuu      GU    U    -   -     uau 

>bmo-mir-2733a-3 (-41.91)   [bmo-miR-2733a:22-43] [bmo-miR-2733a*:108-130]

gu       -  gaaa  uc     -     U CA           g        ucaucucaucacgcc  cau 
  ugauaug ug    au  uaUCA CUGGG G  UGAUGAUUGUg uagagaga               gc   c
  ||||||| ||    ||  ||||| ||||| |  ||||||||||| ||||||||               ||    
  acuauau ac    ug  AUAGU GACUC C  ACUACUGAcau aucucucu               ug   a
-c       u  aaug  -u     U     U AC           a        uuaucuucucuacaa  uac 

>bmo-mir-3391 (-33.80)   [bmo-miR-3391*:1-27] [bmo-miR-3391:83-107]

AGG   -   U    -   AC   CA  G u        ug --- a        uug 
   UCG UGG AUUU CGU  CUU  UG c caguacug  c   g acggauug   u
   ||| ||| |||| |||  |||  || | ||||||||  |   | ||||||||    
   agC GCC UGAG GUA  GAA  AC G gucguggu  g   c ugccuagc   u
--g   U   -    U   GU   AA  A U        gu gcc c        ugc 

>bmo-mir-3392 (-27.30)   [bmo-miR-3392:78-98]

ca      uuuac    ugc         acccac   cc    c ---caac      g 
  cgaaua     ucga   gggaaucga      gac  ucgg g       aguuag g
  ||||||     ||||   |||||||||      |||  |||| |       |||||| g
  guuuau     AGCU   UCUUUAGCU      CUG  AGCc c       ucaauc c
ua      cauua    ---         ----GA   --    a cacauca      a 

>bmo-mir-3393 (-29.70)   [bmo-miR-3393:11-33]

cgaac           GA     AUC  GA       ----      -cagucaauag   gau    u 
     guuugUAGGAG  GAUUU   UG  UAAuucg    ucgauu           guc   uuuc a
     |||||||||||  |||||   ||  |||||||    ||||||           |||   ||||  
     uaaacguuuuu  cuaaa   ac  auuaagc    agcuaa           cag   agag a
----a           ag     -au  -g       auau      uuaaucauaaa   --a    c 

>bmo-mir-3394 (-51.40)   [bmo-miR-3394:13-37]

uc    -u   c U  ---A      U    GGU      A  a  c   ag  c   -    ca 
  ggcg  ccu g AC    AUCGCC UCCG   GCCUUG ug uu ggg  cc caa gcga  u
  ||||  ||| | ||    |||||| ||||   |||||| || || |||  || ||| ||||   
  cugc  gga c ug    uagcgg aggc   cggaac ac aa ccc  gg guu cgcu  g
-u    cc   a u  guac      u    ---      c  c  -   cu  a   a    uu 

>bmo-mir-3395 (-53.00)   [bmo-miR-3395:73-95]

g      a   --c  c  a       --u      -gu      c     ug  gggcg     c 
 acuggu gcu   cc gu guaccgg   gcgaug   ccgggc uggcu  gc     gccgu g
 |||||| |||   || || |||||||   ||||||   |||||| |||||  ||     |||||  
 uggcua cgg   gg ca cguggcu   CGCUGU   GGCUUG AUCGA  cg     cggua c
g      a   cau  a  g       UCU      AGC      -     --  ----a     g 

>bmo-mir-3396 (-44.70)   [bmo-miR-3396:13-37]

uuc    -  uuc      UU U   UC    A  UC g c    -uaa     cuucaa  uu uu   c   u 
   ggau cc   UCCAGU  C AUU  ACGG CG  A g gauu    ugcgg      ag  g  ggg auc u
   |||| ||   ||||||  | |||  |||| ||  | | ||||    |||||      ||  |  ||| |||  
   ccua gg   gggucg  g ugg  ugcc gc  u c cugg    acgcc      uc  c  cuc ugg c
--c    a  --u      uu c   gc    g  ga g u    cgug     --ccuc  cu uc   u   g 

>bmo-mir-3397 (-20.90)   [bmo-miR-3397:20-42]

ggaucuucuacccc c    AG   -----       U     GA    gu  ga  g     gu 
              g aguU  GCU     GAAUAUC CGGUA  AUca  ca  au caauu  u
              | ||||  |||     ||||||| |||||  ||||  ||  || |||||  u
              c ucaa  cga     uuuauag guuau  uagu  gu  ua guuga  g
-------------a -    -a   acaug       u     -a    --  ag  g     aa 

>bmo-mir-3398 (-20.70)   [bmo-miR-3398:61-83]

---------agu       g   -    cu    -   -cg     c   acgc 
            uuauguu aca gugg  uggu ugu   ucauu gug    u
            ||||||| ||| ||||  |||| |||   ||||| |||    u
            aguaCAA UGU UAUC  ACUA ACG   aguaa cac    u
uuuuacuuaguu       A   A    AG    G   Uca     c   aaaa 

>bmo-mir-3399 (-20.20)   [bmo-miR-3399:7-31]

uu  -     C    UU  AU   U   -   Ga    uu u   g 
  uc aaUAU UACA  GA  ACC GGC UAU  ggcg  g cuc a
  || ||||| ||||  ||  ||| ||| |||  ||||  | ||| c
  ag uuaua augu  cu  ugg ucg gua  ucgc  c ggg c
-c  c     u    --  --   u   u   gg    -u u   u 

>bmo-mir-3400 (-45.50)   [bmo-miR-3400:9-32]

-   g   ----       UG -    CAU    UUA  c         ----     c 
 cgu cag    aGCAGCU  C AAGU   UUUC   Gg cccccucgc    cgguc c
 ||| |||    |||||||  | ||||   ||||   || |||||||||    |||||  
 gcg guc    uuguugg  g uuca   aaag   cc gggggagug    gccag c
g   g   caug       ga a    --c    --c  a         uaca     a 

>bmo-mir-3401 (-25.03)   [bmo-miR-3401:3-25]

ccU    A    --     GU        aca        acgcauc 
   UUAC GUGU  AAAUC  UCGUGAgc   uaccaagu       u
   |||| ||||  |||||  ||||||||   ||||||||       a
   ggug uaca  uuuag  ggcgcucg   augguuua       c
--u    c    ag     --        acc        aaaaacu 

>bmo-mir-3402 (-30.50)   [bmo-miR-3402:25-49]

- gg  a  -   c aaaagau   -   CAA         ACC  U    U   a   gagu 
 g  ua ag gcc g       cca cUG   UAACUUUAA   GC GAGC gga cug    c
 |  || || ||| |       ||| |||   |||||||||   || |||| ||| |||     
 c  au uc cgg c       ggu ggc   auugaaauu   cg cucg ccu gau    u
a au  c  a   u --gccau   c   -ag         ---  -    c   -   gagg 

>bmo-mir-3403 (-33.80)   [bmo-miR-3403:99-123]

g    -        ucu    ucgucu     u   uc cgg  c     ccugga   -ac   c 
 caag cggacuuc   ggcu      gauuc gag  c   au ucagc      aug   gca u
 |||| ||||||||   ||||      ||||| |||  |   || |||||      |||   ||| u
 GUUU GUCUGAAG   CUGA      CUAAG cuu  g   ua agucg      uac   cgu g
g    A        --U    -----U     U   gu --a  a     uaguag   aaa   c 

>bmo-mir-3347b (-30.60)   [bmo-miR-3347b:86-109]

acuu u    ccu  ucu u     -        ggcgguauua       -c    -  ua 
    g ggga   gu   g ucagu auguaugc          augagcu  ugcc ca  g
    | ||||   ||   | ||||| ||||||||          |||||||  |||| ||  c
    C CUCU   CG   C AGUUA UACAUgcg          uacucgg  augg gu  a
---g -    -AU  -UU U     C        --------ag       ua    c  uc 

>bmo-mir-3404 (-35.30)   [bmo-miR-3404:101-125]

uga   ac          cauuccc         a   uuaguguaaa     u        gaaauguuuuua     -    ggu 
   aag  auuguuuuua       aucgucaca uau          ugcgg aaagauuu            aacuc acuu   a
   |||  ||||||||||       ||||||||| |||          ||||| ||||||||            ||||| ||||    
   uuc  ugacggaaau       uggCAGUGU AUA          ACGUC UUUCUAAG            Uugag ugaa   a
--a   aa          -----ca         G   ----------     U        ------------     c    aua 

>bmo-mir-3405 (-31.40)   [bmo-miR-3405:27-51]

-   uuugu    a   a   uaa    -   UUG     UU   ---      UA    u   cg -----------      g 
 ucu     gaca auc cca   uuuU CCA   UGUUC  GAA   ACUCUC  gauu cuu  u           aacggu u
 |||     |||| ||| |||   |||| |||   |||||  |||   ||||||  |||| |||  |           ||||||  
 agg     cugu ugg ggu   aaga ggu   auaag  cuu   ugggag  uuag gaa  a           uugcca u
u   ---uu    g   a   -ca    u   -ca     -u   gca      --    c   au acacuuuuucu      g 

>bmo-mir-3406 (-31.20)   [bmo-miR-3406:28-52] [bmo-miR-3406*:68-95]

c        --a       --ga   gauaa     A UA   C     AUG       -u  uc 
 guucgcau   uuuagau    ugu     UAGUA G  GCA GUUUG   AGCAugu  ag  u
 ||||||||   |||||||    |||     ||||| |  ||| |||||   |||||||  ||  u
 uaagugug   agauuua    aca     aUCGU C  CGU CGAAC   UUGUGCG  uc  c
u        aaa       auua   aucua     A CG   -     AGA       CU  uu 

>bmo-mir-3407 (-20.00)   [bmo-miR-3407:55-77]

--------------u        uuc      aauuuuauua     -a      -u   gg 
               gaaccgau   acuucu          cguuu  uucggu  uua  u
               ||||||||   ||||||          |||||  ||||||  |||  a
               uuuggcuG   UGAAGG          GCAGA  GGGUCA  agu  u
uaagcgcucguccac        --U      ----------     GA      CU   au 

>bmo-mir-3408 (-23.90)   [bmo-miR-3408:70-91]

uaa ug  acu  a    cuu   uguu   g  ua   ga   uaaa     guu 
   u  ug   cg ucgc   cuc    cac gg  agu  cgc    aaccu   c
   |  ||   || ||||   |||    ||| ||  |||  |||    |||||   a
   a  au   gc gGCG   GAG    GUG CC  UCA  GCg    uugga   u
--a gu  -au  a    -AU   ---U   G  UA   --   ---c     guu 

>bmo-mir-3409 (-20.76)   [bmo-miR-3409:12-34]

aguaagcucc       --A       --CAA   -CCAuucc    a 
          gUGAACA   GCUUCCG     GUG        uuuc u
          |||||||   |||||||     |||        ||||  
          cacuugu   cgaaggc     cac        gaag a
---------c       auc       accgc   aaauucuc    c 

>bmo-mir-3410 (-20.90)   [bmo-miR-3410:4-28]

a     -AAA   C    -      U     ugu    --gaag       ucc 
 agUAU    GAU CUAC AUUGAG GUAAa   ucau      caaaaaa   c
 |||||    ||| |||| |||||| |||||   ||||      |||||||   g
 ucaug    uug ggug uagcuc uauuu   agua      guuuuuu   a
a     aaug   c    a      -     ---    auaaua       uuu 

>bmo-mir-3411 (-27.60)   [bmo-miR-3411:70-92]

g   a   g   --      a     aaaaaaagc    uaa      -        
 gcu uca cga  auaggu gggga         ugcc   guuacu uugugua 
 ||| ||| |||  |||||| |||||         ||||   |||||| |||||| g
 ugg agU GCU  UGUCUA CUCCU         AUGG   cgauga aacauau 
u   -   -   CA      -     ---------    CUg      u        

>bmo-mir-3412 (-20.00)   [bmo-miR-3412:64-86]

u     --aa  c      c  a       ca   c  c  c       -uu    u 
 aaaca    cg uuaugu aa uaaauua  gaa ga gu acauucu   agau c
 |||||    || |||||| || |||||||  ||| || || |||||||   ||||  
 uuugu    gc gauaua uu aUUUGAU  CUU CU UA UGUAAGG   ucug a
c     gcuc  u      a  a       UA   -  -  -       Ugc    a 

>bmo-mir-3413 (-21.72)   [bmo-miR-3413:14-38]

u           a      CCC  U    CC    -GAGagc   -   au 
 uacaugugaaa UGAGUA   GC GCGC  GAGA       agg uug  u
 ||||||||||| ||||||   || ||||  ||||       ||| |||   
 auguauauuuu acuugu   ug cgcg  cuuu       ucc agc  u
c           -      -uu  -    -u    gauauau   u   au 

>bmo-mir-3414 (-20.50)   [bmo-miR-3414:7-30] [bmo-miR-3414*:63-87]

aa  au  -     ---   --UU       C  U    --     a   g     
  ag  UC CUUAA   GUU    UUGAACG AG Gucg  gccuc ucu ucca 
  ||  || |||||   |||    ||||||| || ||||  ||||| ||| ||| c
  uc  gg gaauu   CAA    AGCUUGU UU UAGU  uggag gga aggu 
-g  cc  c     AUC   CUGU       U  U    ug     -   -     

>bmo-mir-3415 (-23.24)   [bmo-miR-3415:66-88]

-------uu    a    --       --a   a     u   cuu   gcuauc 
         ggua cgau  ggaaaua   gca ucuug aau   cuc      u
         |||| ||||  |||||||   ||| ||||| |||   |||       
         ccAU GCUG  UCUUUGU   CGU Ggaac uug   gag      c
guaaugacu    -    AC       CAC   A     c   -cu   acucuc 

>bmo-mir-3416 (-52.04)   [bmo-miR-3416:111-135]

g      -        g   uguu    uuuu      --a    u       -    c   uguuuuu   ug cgc 
 gcgaga aacucagu ggc    uguu    cugcgg   ucga uuuaugu gagg acc       uau  a   g
 |||||| |||||||| |||    ||||    ||||||   |||| ||||||| |||| |||       |||  |   u
 uguucu uugggUCG UCG    GCAG    GACGCU   AGCU aaguaca cuuc ugg       gug  u   u
g      a        G   ---U    ----      GUA    u       u    u   uguuauc   gu ccu 

>bmo-mir-3417 (-29.70)   [bmo-miR-3417:100-122]

-       aau  uu     -   uu    g   -----aa      cgu      au u      uac 
 guaaagg   cg  acguu uug  uguc cua       ugagua   uuuaug  c auaucu   u
 |||||||   ||  ||||| |||  |||| |||       ||||||   ||||||  | ||||||    
 cauuuuu   GU  UGUAA AGC  AUAG GAU       acuuau   aagugc  g uguagg   g
g       ---  UU     U   UU    A   gacgucg      auu      cg u      uag 

>bmo-mir-3418 (-29.70)   [bmo-miR-3418:84-105]

-----auc      --c     aagcuaacu   -     ag  uac     -----uu     aa   cua 
        cgucuc   ucuga         cca aaaga  cu   gaggc       uguac  uau   u
        ||||||   |||||         ||| |||||  ||   |||||       |||||  |||    
        gcagag   aGACU         GGU UUUCU  GA   CUCcg       acaug  aug   a
guguaaaa      uac     ---------   C     AA  -UU     cggccuc     aa   cag 

>bmo-mir-3419 (-20.90)   [bmo-miR-3419:77-98]

ua       ugaacaacaga   ag gc       cua  a   aaga  u   ac   c            
  uuuuauu           aug  c  acguuuu   aa agu    ac gua  uag aggcuaacauu 
  |||||||           |||  |  |||||||   || |||    || |||  ||| |||||||||| a
  aaaauaa           uau  g  ugcaaaa   uu uCA    UG CAU  AUU UCCGAUUguaa 
-a       -----------   cu aa       ---  a   -AAA  U   -A   -            

>bmo-mir-989b (-26.51)   [bmo-miR-989b:26-46]

c   ac     acu        ac   -------------        -A    AAC     gc     
 acu  augua   ugugacgu  aGU             GUGAUGUG  CGUG   AAGua  gacc 
 |||  |||||   ||||||||  |||             ||||||||  ||||   |||||  ||| a
 uga  ugcau   gcacugua  uca             uauuauac  gcac   uuuau  cuga 
a   ca     -au        au   gcuucucaauucu        ga    cau     -a     

>bmo-mir-3420 (-25.40)   [bmo-miR-3420:14-38]

a   a  ---a   u    U   AU  CC     ---   -     uuuc   gaa  g g 
 gcg uc    gaa uUAC GUU  UG  UGGCC   UCG CUCAu    gaa   au g g
 ||| ||    ||| |||| |||  ||  |||||   ||| |||||    |||   || |  
 cgu ag    uuu aaug caa  ac  gccgg   agc gagua    cuu   ua c u
a   a  cgaa   c    c   --  cc     uac   c     ---u   -ag  g c 

>bmo-mir-3421 (-33.70)   [bmo-miR-3421:36-59]

aa  -   cga   cg       ---ug   -gcgu  uu       -AA    -AU  GA   CUu         agc 
  ac agc   auu  caauagu     uug     gc  UCAAACG   UUAA   CA  GGU   ugguaguga   g
  || |||   |||  |||||||     |||     ||  |||||||   ||||   ||  |||   |||||||||    
  ug ucg   uga  guuauca     aac     ug  aguuugu   gauu   gu  cca   gucauuacu   a
-g  a   cug   au       uugaa   aaagu  -u       aug    auu  aa   --c         cac 

>bmo-mir-3422 (-25.40)   [bmo-miR-3422:18-40]

ua  ug    a     --------aU       -    --GAA   C  A    a 
  gg  gcag cgaga          GGAUCUA CUGU     GGA UG Gaau u
  ||  |||| |||||          ||||||| ||||     ||| || ||||  
  cu  cguu guuuu          cuuagau gaca     ucu gc cuua a
-g  gu    -     cguaauuagu       a    auuag   a  c    u 

>bmo-mir-3423 (-22.00)   [bmo-miR-3423:18-42]

ucc   -ac    -       CUU   -   UAU  CA       ---------        u  u 
   acc   ccac auuaaUA   UAG GUC   UG  UGAUAAA         ugcgaaaa ua u
   |||   |||| |||||||   ||| |||   ||  |||||||         |||||||| ||  
   ugg   ggug uaguuau   auc uag   ac  auuauuu         gcguuuuu au a
--c   gaa    c       -uu   g   --u  --       uuaguuugg        u  u 

>bmo-mir-3424 (-31.34)   [bmo-miR-3424:32-55]

-   -  g  -     guuccauu   a  u    C   U    UAU      --UA     ug    c 
 guc ug cu uggua        aua cc cagU AUA GUAG   UUUACC    UGUuu  uugc c
 ||| || || |||||        ||| || |||| ||| ||||   ||||||    |||||  ||||  
 cgg ac gg accgu        uau gg gucg ugu cauu   gagugg    gcaga  gaug u
c   u  g  c     --aacaau   a  u    c   -    gau      ucga     ca    u 

>bmo-mir-3425 (-22.50)   [bmo-miR-3425:33-57]

auc    uaa  auc   uu     auuu     G       AC    -     -      gg 
   gguc   uu   uca  aaaac    uuuUC AAUUUUU  CCUU UUUUG GUCUga  u
   ||||   ||   |||  |||||    ||||| |||||||  |||| ||||| ||||||   
   ccag   ag   agu  uuuug    aggag uuaaaaa  ggaa gaaau uaggcu  a
--c    -cg  -aa   -c     --gc     -       --    c     g      au 

>bmo-mir-3426 (-20.70)   [bmo-miR-3426:66-88]

---------------     ucuu  gguc          uuug        aua  ua      uc 
               uuaag    au    uucauuuaau    auguacgu   ug  cgaaua  c
               |||||    ||    ||||||||||    ||||||||   ||  ||||||  c
               gauuc    ua    aAGUGAGUUG    UACGUGUA   AC  guuuau  u
caauaaaaugauuau     --uu  auuu          --UA        -GA  ua      cg 

>bmo-mir-3427 (-21.94)   [bmo-miR-3427:71-93]

a   ucgg      a  uu       agc      uaagu        aa  aucaau 
 gua    uuuacc gu  agggugu   ugguga     gauuuuua  uc      u
 |||    |||||| ||  |||||||   ||||||     ||||||||  ||       
 cgu    agaugg cg  uuUCGCA   AUUACU     CUGAAAAU  ag      g
c   -uaa      -  -u       AAU      ----U        aa  cacuau 

>bmo-mir-3428 (-23.90)   [bmo-miR-3428:21-44]

cu    uuu      acug      -    U  -        ---------A     gu 
  aguu   aaucuu    cUCAGA CGUG CA UUUUUCCU          UUAag  g
  ||||   ||||||    |||||| |||| || ||||||||          |||||   
  ucag   uuggaa    gaguuu gcgu gu gagaaggg          aguuc  a
-u    uau      ---g      c    u  c        cucaauaaca     aa 

>bmo-mir-3429 (-21.80)   [bmo-miR-3429:5-28]

aaua   U     UU  UUA   A     -a      -aaaaauauau    uu 
    UCU AAUAA  UC   ACG UUUGu  guugcu           cguu  a
    ||| |||||  ||   ||| |||||  ||||||           ||||   
    agg uuguu  ag   ugc aaaca  cagcgg           gcaa  u
---a   -     uu  -ua   -     gg      gcauacacgau    ca 

>bmo-mir-3204b (-41.90)   [bmo-miR-3204b:21-41]

u  augu     u a       C          U        au 
 ga    agaca c aggccUG GUCAUAAACU CCCAUAUg  u
 ||    ||||| | ||||||| |||||||||| ||||||||   
 cu    ucugu g uucgggu caguauuuga ggguauac  u
c  -guu     u c       u          -        cc 

>bmo-mir-3430 (-29.92)   [bmo-miR-3430:34-58]

gu         cuacgucu       gu   u   UU    A    G   UU U   C    aaa  g  u aua   g 
  uauucaagg        uuugaag  uau aUA  GCUU UUAA AAU  G GCU aucc   ga ac g   agc g
  |||||||||        |||||||  ||| |||  |||| |||| |||  | ||| ||||   || || |   |||  
  auaaguuuc        aaacuuu  aua ugu  ugga aguu uua  c cga uggg   cu ug c   uug a
-u         ---aaacc       --   c   uu    -    a   uu -   u    ---  g  - --g   a 

>mmu-mir-3470a (-31.90)   [mmu-miR-3470a:8-28]

--  ug -     CUUU     -C       Gc   aaa 
  cc  g acUCA    GUAGA  CAGGCUG  cuu   u
  ||  | |||||    |||||  |||||||  |||   u
  gg  c ugagu    cgucu  guccgac  gag   c
ua  gu g     ccuc     cc       ua   aca 

>mmu-mir-3470b (-47.86)   [mmu-miR-3470b:34-54]

--  -auucucu     -     ggcu    ug      ACUCU     CCA   U  ccu    cuc 
  gg        gugua gccuu    gucc  gcacUC     GUAGA   GGC GG   ugaa   a
  ||        ||||| |||||    ||||  ||||||     |||||   ||| ||   ||||    
  cc        cgcgu cggaa    cagg  cgugag     cgucu   ccg cc   acuu   a
gc  guaaccau     a     --au    gu      cccuc     ---   u  ---    aaa 

>mmu-mir-1937b-2 (-52.10)   [mmu-miR-1937b:28-45]

--     g  ----         gg        -       AC A  CCCCAaa   -aaga    c 
  gucuc gu    cucuugggu  ucgcguca AUCCCGG  G GC       uga     uccc a
  ||||| ||    |||||||||  |||||||| |||||||  | ||       |||     ||||  
  cagag cg    gagaaccca  ggcgcggu uagggcu  c cg       acu     aggg a
gc     g  caga         --        g       -- -  --aacuc   cccag    a 

>mmu-mir-3471-1 (-36.30)   [mmu-miR-3471:25-46]

--       -c    ----g    --       -U    UCC     -UA  -    Uuccuca      -  ug 
  aaaggag  uuca     uuga  gccucca  GAGA   AACUG   AG GCAU       auuagu gc  u
  |||||||  ||||     ||||  |||||||  ||||   |||||   || ||||       |||||| ||   
  uuuccuu  gagu     gauu  uggaggu  uucu   uugac   uc cgua       ugaucg cg  u
au       uu    aucga    ua       uu    ---     cug  u    -----ug      u  ua 

>mmu-mir-1937b-3 (-50.90)   [mmu-miR-1937b:32-49]

--   -gg     -   -a        --a     -uaa       -  --    CCCC  aug    aucc 
  ugg   ucucu gag  auuggggu   ggcca    AUCCCGG AC  GAGC    Ac   uaag    c
  |||   ||||| |||  ||||||||   |||||    ||||||| ||  ||||    ||   ||||     
  acc   agaga cuc  uaacccca   ucggu    uagggcc ug  cucg    ug   auuc    c
ac   aaa     a   ag        cga     cgag       c  aa    ucuc  ---    gaag 

>mmu-mir-3471-2 (-35.60)   [mmu-miR-3471:14-35]

--   aa    --    U    ---   -AA UG     --CA       aa   g 
  aga  ugcc  ucca GAGA   UCC   C  UAAGG    UUuuccc  uua u
  |||  ||||  |||| ||||   |||   |  |||||    |||||||  |||  
  ucu  augg  gggu cucu   agg   g  guucc    aaaaggg  aau g
gu   -g    uc    -    aac   gug gu     ccgg       ga   a 

>mmu-mir-1937b-4 (-54.10)   [mmu-miR-1937b:28-45]

--     g  ----         gg        -       AC A  CCCCAaa   aa    -     
  gucuc gu    cucuugggu  ucgcguca AUCCCGG  G GC       uga  gauc ccca 
  ||||| ||    |||||||||  |||||||| |||||||  | ||       |||  |||| ||| a
  cagag cg    gagaaccca  ggcgcggu uagggcu  c cg       acu  cuag ggga 
gc     g  caga         --        g       -- -  --aacuc   -c    a     

>mmu-mir-1937b-5 (-52.60)   [mmu-miR-1937b:29-46]

--      g  ----         gg        -    --C  -AC   CCCCCAaa   -aaga    c 
  ggucuc gu    cucuugggu  ucgcguca AUCC   GG   GAG        uga     uccc a
  |||||| ||    |||||||||  |||||||| ||||   ||   |||        |||     ||||  
  ccagag cg    gagaaccca  ggcgcggu uagg   cc   cuc        acu     aggg a
ag      g  caga         --        g    acu  gaa   --------   cccag    a 

>mmu-mir-3472 (-51.00)   [mmu-miR-3472:47-71]

--                                c 
  uucuuuccagcuucuggcuauuauaaauaagg u
  |||||||||||||||||||||||||||||||| g
  AAGGAAGGUCGAAGACCGAUAAUauuuauucc c
CC                                u 

>mmu-mir-1186b (-27.20)   [mmu-miR-1186b:1-22]

--        A  G  U       uu   g u 
  UGGGAUUA AG CA GCACCAC  uuu u g
  |||||||| || || |||||||  ||| |  
  acccuagu uc gu cguggug  gag a u
aa        g  a  c       uc   g a 

>mmu-mir-3473 (-30.80)   [mmu-miR-3473:54-71]

---           a     -cc   aaau    uua 
   ugagccaucuc ccagc   aga    auuu   a
   ||||||||||| |||||   |||    ||||   a
   ACUCGGUAGAG GGUcg   ucu    uaag   a
CCG           A     aau   --gu    uga 

>mmu-mir-3474 (-28.50)   [mmu-miR-3474:1-22]

------C       G      UG   U uuu 
       CCUGGGA GAGACG  GAU C   a
       ||||||| ||||||  ||| |    
       ggaccuu uucugc  cua g   g
ucgacuu       g      gu   c uga 

>aae-mir-9c (-35.60)   [aae-miR-9c:63-86]

         c  a            cu    g     u  uga   uug 
gauuuccgg ug aucuuugguauu  agcu uagaa gu   gcu   u
||||||||| || ||||||||||||  |||| ||||| ||   |||   g
uuaaggguc ac UGGAGACCAUGA  UCGA AUCUu ua   ugg   a
         a  C            UU    A     c  ---   uau 

>aae-mir-929-1 (-45.00)   [aae-miR-929:19-39]

-ug     gacu   c   A        AG         -    u 
   ccuac    ggu caa UUGACUCU  UAGGGAGUC Cuug g
   |||||    ||| ||| ||||||||  ||||||||| ||||  
   ggaug    cca guu gacugagg  aucccucag gagc u
gua     --gc   a   a        ca         u    a 

>aae-mir-929-2 (-45.00)   [aae-miR-929:19-39]

--ug     gacu   c   A        AG         -    u 
    ccuac    ggu caa UUGACUCU  UAGGGAGUC Cuug g
    |||||    ||| ||| ||||||||  ||||||||| ||||  
    ggaug    cca guu gacugagg  aucccucag gagc u
ggua     --gc   a   a        ca         u    a 

>bhv1-mir-B10 (-31.80)   [bhv1-miR-B10:38-59]

    -a    uc    g    ----    c  gc  u 
gugg  cgcu  gcgc gcug    cgcc ug  cc c
||||  ||||  |||| ||||    |||| ||  ||  
cgcc  gcgg  CGUG UGGC    GCGG AC  gg u
    ag    cC    G    AGAG    U  -A  u 

>hsv2-mir-H5 (-62.60)   [hsv2-miR-H5:14-36]

       u           G  C    CAC       uc  aa 
cucccgc ccugcGGGGGG CU GGGC   CUGACCu  gu  c
||||||| ||||||||||| || ||||   |||||||  ||  c
gagggcg gggcgcccccc ga cccg   gacugga  ca  u
       c           a  c    --a       cu  cg 

>hsv2-mir-H6 (-59.30)   [hsv2-miR-H6:28-47] [hsv2-miR-H6*:67-89]

    uc    cuc       gc     A        CG       GCa  a    gau 
ggcg  ggga   gcggagg  cggag AUGGAAGG  AGGGGAU   gg ggag   c
||||  ||||   |||||||  ||||| ||||||||  |||||||   || ||||    
ccgc  ccuu   cgccuuu  gccUC UACCUUCC  UCUUCUA   CC Ccuc   g
    ca    --u       uu     C        CG       ---  -    agg 

>ghr-MIR3476 (-43.00)   [ghr-miR3476:11-31] [ghr-miR3476*:86-106]

ua     a  U       GU         G    ucugcuuuuuugaagcagauau 
  ucuug uu GAACUGG  UUGUUGGCU Cuga                      c
  ||||| || |||||||  ||||||||| ||||                       
  aggac AA CUUGACU  AACAACCGA gacu                      a
uc     c  U       AC         g    uuucacaaaauaauugaucuaa 

>nvi-mir-14 (-48.70)   [nvi-miR-14:67-87]

cuuuuua      c            u      cu    u    a g   ucc 
       uucgcu ggucaguggggg gagaaa  ggcu ggcu u uac   c
       |||||| |||||||||||| ||||||  |||| |||| | |||    
       gagcgg ccgguuAUCCUC CUCUUU  CUGA CUga a gug   c
----uaa      c            U      UU    -    c g   uua 

>nvi-mir-29b (-36.60)   [nvi-miR-29b:66-85]

acacgaagaau      a c  a        c     -  c        -   acc 
           uaagau g ag gguacuga uucgg ug gugcuggg guu   g
           |||||| | || |||||||| ||||| || |||||||| |||    
           auucug c uc ucaUGACU AAGUU AC CACGAUcc cga   a
----------g      - -  a        A     U  -        g   acu 

>nvi-mir-33 (-36.00)   [nvi-miR-33:31-49]

uaugcaacgaaaauauu   u        a  -         UU C       gaaua 
                 guc gcuacgag GU GCAUUGUAG  G AUUGcau     u
                 ||| |||||||| || |||||||||  | |||||||      
                 cgg ugguguuc ca cgugacguc  c ugacgug     u
----------------g   u        c  a         uu a       aaagu 

>nvi-mir-281 (-45.00)   [nvi-miR-281:61-83]

--aagaaaa     g   -             -ua     c      a g  g 
         aagcg acg cuauaaagagagc   uccau gacagu u gu a
         ||||| ||| |||||||||||||   ||||| |||||| | || u
         uucgc ugc ggUGUUUCUCUCG   AGGUA CUGUca a ua a
gcaacauaa     -   a             UUC     -      c g  g 

>nvi-mir-7 (-37.30)   [nvi-miR-7:15-37]

u       g     U   A  C          G    uc   uu 
 gagcguc uugua GGA GA UAGUGAUUUU UUGU  uac  a
 ||||||| ||||| ||| || |||||||||| ||||  |||  a
 cucgcag aacau ccu cu aucacuaagg aaca  aug  g
g       a     -   a  a          -    --   ua 

>nvi-mir-137 (-40.70)   [nvi-miR-137:60-81]

uacaucgga        ug  g   c       ug  g   u    - a a 
         gaccaggu  gc acg guauucu  gg aau aaca c c u
         ||||||||  || ||| |||||||  || ||| |||| | |  
         cugguccg  ug UGC CAUAAGA  UC UUA UUgu g g a
--ucucuag        uu  A   A       GU  G   -    c c c 

>nvi-mir-31a (-39.02)   [nvi-miR-31a:28-49]

ugcagcguaaaaua       gua aa   AA     C           ugcuu 
              ugagcgu   g  GGC  GAUGU GGCAUAGCUGA     u
              |||||||   |  |||  ||||| |||||||||||     u
              acucgca   c  ccg  cuaca cugugucggcu     g
-----------aaa       aac ga   ac     -           uuaaa 

>nvi-mir-71 (-53.72)   [nvi-miR-71:26-44]

gaaaaucaauug     auu    u         U              uuacc 
            gcgag   ccgc UGAAAGACA GGGUAGUGAgaugc     u
            |||||   |||| ||||||||| ||||||||||||||     c
            cgcuc   ggcg acuuucugu uccaucacucugcg     g
-------aacga     -gc    u         -              cuuag 

>nvi-mir-2c (-39.50)   [nvi-miR-2c:63-85]

ggagacaagagagcgaguggcaugcuuuuac              u  c    ggc 
                               caucaaagcugguu gu auag   u
                               |||||||||||||| || ||||    
                               GUAGUUUCGACCGA CA UAUc   u
-----------uacggccuguguuaaaaCGA              -  C    agc 

>nvi-mir-13a (-35.30)   [nvi-miR-13a:67-87]

gagcagagacauggaac        u    -ua       u         a   ucuc 
                 uuuugcgg ccga   caucaaa ugguugugg aug    g
                 |||||||| ||||   ||||||| ||||||||| |||    u
                 aagaugcc gguu   GUAGUUU ACCGACACU Uac    c
---------------uc        c    cGA       U         A   cuuu 

>nvi-mir-13b (-39.20)   [nvi-miR-13b:52-74]

----a    -gc       -        -u        gc   -uu  c 
     gagc   gauccga ucgucaaa  ugguugug  gug   gu u
     ||||   ||||||| ||||||||  ||||||||  |||   ||  
     uucg   cuagguU AGCAGUUU  ACCGACAC  Uac   ua a
uagcg    gua       G        UU        UA   uuu  g 

>nvi-mir-2a (-42.60)   [nvi-miR-2a:56-78]

gu     u   --g       -     -       u     -u g  u 
  ggaga cgc   ucgcuca caaag uggcugu guaug  c ga u
  ||||| |||   ||||||| ||||| ||||||| |||||  | || u
  cuucu gcg   ggCGAGU GUUUC ACCGACA UAUac  g uu c
uc     -   agu       U     G       C     uc g  u 

>nvi-mir-2b (-46.10)   [nvi-miR-2b:51-73]

    -     u   c        -             -  gcu 
ucgg cuguu cgc cgucagag ugguugugauaug gu   a
|||| ||||| ||| |||||||| ||||||||||||| ||    
agcu gacaa gCG GUAGUUUC ACCGACACUAUac ca   u
    u     u   U        G             g  agu 

>nvi-mir-92a (-32.70)   [nvi-miR-92a:63-83]

gu   u     aaaa         a   c    g       ucguaau  u 
  uug ugcau    gauaggucg gau ggug caauguu       gg u
  ||| |||||    ||||||||| ||| |||| |||||||       ||  
  aau acgua    cUAUCCGGC CUG UCAC GUUAuaa       cc u
uu   c     -agg         C   U    -       ----cuc  u 

>nvi-mir-283 (-37.20)   [nvi-miR-283:21-40]

u  --  -u     ca    gu AA        U  U         aua uu 
 gc  ug  ccagu  cgua  c  AUAUCAGC GG AAUUCUggg   c  a
 ||  ||  |||||  ||||  |  |||||||| || |||||||||   |  u
 cg  gc  gguca  gcau  g  uauggucg uc uuaggaccc   g  u
c  cu  uc     -a    ug cc        u  -         gac ua 

>nvi-mir-12 (-38.40)   [nvi-miR-12:13-35]

      a gg  UG     U   U           -  cuuu 
aagagg g  ug  AGUAU ACA CAGGUACUGGU gu    u
|||||| |  ||  ||||| ||| ||||||||||| ||     
uucuuc c  gc  ucaua ugu guucaugacca cg    u
      g uu  gu     u   -           g  acuu 

>nvi-mir-184 (-34.30)   [nvi-miR-184:56-77]

-aac   -   aaa c         -      u   g   -  uaaa 
    gug ccu   g cccuuauca uucucc guc agu gu    a
    ||| |||   | ||||||||| |||||| ||| ||| ||    u
    cau ggg   c GGGAAUAGU AAGAGG CAG Uca ca    u
uaga   u   agc C         C      -   G   g  ucuc 

>nvi-mir-929 (-44.80)   [nvi-miR-929:17-37]

-----------a     cu       aA        AG         -  ugcau 
            cuuaa  gggguca  UUGACUCU  UAGGGAGUC Cc     u
            |||||  |||||||  ||||||||  ||||||||| ||      
            gaauu  ccucagu  gacugaga  auccuucag gg     c
cagccacucgca     uu       cg        ca         c  uauaa 

>nvi-mir-190 (-36.80)   [nvi-miR-190:24-49]

gaauccauuc    u      -cuA            AU          Aua 
          ccag auacug    GAUAUGUUUGAU  UCUUGGUUGU   a
          |||| ||||||    ||||||||||||  ||||||||||   u
          gguc ugugac    uuauacaaacua  aggaccagca   a
-------uuu    -      auua            --          aua 

>nvi-mir-iab-4as (-29.80)   [nvi-miR-iab-4as:6-28]

u     U            G    A  G  caga 
 ccugU ACGUAUACUGAA GUAU CC ga    a
 ||||| |||||||||||| |||| || ||    a
 ggaca ugcauaugacuu caua gg cu    u
g     -            a    -  a  caca 

>nvi-mir-iab-4 (-30.60)   [nvi-miR-iab-4:42-65]

c     -            u    -  u  gu u 
 ccugu acguauacugaa guau cc ga  g a
 ||||| |||||||||||| |||| || ||  | u
 ggaCA UGCAUAUGACUU CAUA GG cu  c u
a     A            C    U  C  gu u 

>nvi-mir-10 (-39.00)   [nvi-miR-10:22-42]

ccc   ---ua    u      cu   -  G    U           ---  a 
   agu     augc cuacau  ACC CU UAGA CCGAAUUUGUu   ug a
   |||     |||| ||||||  ||| || |||| |||||||||||   ||  
   ucg     uacg ggugug  ugg ga aucu ggcuuaaacag   ac g
-ca   uaaca    u      uu   a  g    u           cgg  u 

>nvi-mir-100 (-34.30)   [nvi-miR-100:19-40]

ca   -a      g   cuA   C      CC  A       ---  uuuu 
  gcu  cuugau aca   ACC GUAGAU  GA CUUGUGg   gc    u
  |||  |||||| |||   ||| ||||||  || |||||||   ||     
  cgg  ggacug ugu   ugg caucua  cu gaacgcc   cg    u
ug   cc      a   aca   c      uc  c       aua  uaua 

>nvi-let-7 (-49.40)   [nvi-let-7:13-33]

---g     c     U   G                  ggaaugaaaauu 
    cgacg cuggg GAG UAGUAGGUUGUAUAGUgg            c
    ||||| ||||| ||| ||||||||||||||||||             
    gcugu ggccc uuc aucguucaacaugucacc            g
cgcg     u     u   a                  uaagguauuacu 

>nvi-mir-125 (-42.10)   [nvi-miR-125:27-48]

auaaagccu  c  - g          U  CU    CC   A       --c    c 
         gc gc c cgucgccggu CC  GAGA  CUA CUUGUGA   gucg g
         || || | |||||||||| ||  ||||  ||| |||||||   ||||  
         cg cg g guagcgguua gg  cucu  gau ggacacu   uagc u
--aguuuuc  u  u a          u  -u    ua   c       cua    a 

>nvi-mir-2796 (-48.40)   [nvi-miR-2796:53-73]

c          -  u  gg      au      cca      a 
 cggcaacaag gu ag  guuucu  cggccu   gcagcu a
 |||||||||| || ||  ||||||  ||||||   |||||| g
 gcuguuguuc CG UC  CAAAGG  GCCGGA   ugucga a
a          u  U  AU      CG      ---      c 

>nvi-mir-279 (-47.50)   [nvi-miR-279:67-88]

ccaucggacaacgacc      u      g        a   -      g     uuu 
                agccga uguacu agugagug ugg ucuggu cacgg   a
                |||||| |||||| |||||||| ||| |||||| |||||   u
                ucggcu gcaugA UUACUCAC ACC AGAUCA GUguc   c
----------------      u      A        -   U      -     uag 

>nvi-mir-34 (-49.20)   [nvi-miR-34:21-42]

cggggaa       g    uUG       G U    U        -ag u 
       gcgaccg cgug   GCAGUGU G UAGC GGUUGugu   c u
       ||||||| ||||   ||||||| | |||| ||||||||   | a
       cgcuggc guau   cgucaca c aucg ccagcacg   g u
--cuuag       a    uaa       g u    -        aaa a 

>nvi-mir-277 (-41.10)   [nvi-miR-277:54-76]

      cu    -c           - c         ---------- g 
ggcagg  gggg  ucgugccagau g gcguuuaca          c a
||||||  ||||  ||||||||||| | |||||||||          |  
ccgucc  cucu  AGCAUGGUCUA C CGUAAAUgu          g g
      -u    AC           U A         cauaaguccc a 

>nvi-mir-317 (-45.00)   [nvi-miR-317:55-79]

  g          a    -      --   c         g agg 
gu cucggagaac ggga gccacu  cug guucacucg u   u
|| |||||||||| |||| ||||||  ||| ||||||||| |   a
cg gagucuuuUG CUCU UGGUGG  GAC CAAGUgggc a   a
  g          A    A      UC   A         g aga 

>nvi-mir-275 (-44.10)   [nvi-miR-275:61-83]

uuacguacag      u   a u         - c       ac      gc 
          ccaguu gca c cgcgcuacu c gguacuu  gacugu  a
          |||||| ||| | ||||||||| | |||||||  ||||||  u
          ggucag cgu G GCGCGAUGA G CCAUGGA  CUgaua  u
---------a      -   c C         A U       --      gc 

>nvi-mir-305 (-36.80)   [nvi-miR-305:16-38]

g     ---ug     u     UA     U    UG  CU    au 
 gaggc     caugu aAUUG  CUUCA CAGG  CU  Ggug  u
 |||||     ||||| |||||  ||||| ||||  ||  ||||  u
 uuccg     guaua uuaac  gaggu gucc  gg  ccau  u
-     uguua     c     gc     u    gu  -c    ag 

>nvi-mir-276 (-38.34)   [nvi-miR-276:52-73]

u    g  a     c    a     ag         guagau 
 ggua ag uccag agcg gguau  aguuccuac      u
 |||| || ||||| |||| |||||  |||||||||       
 ccgu uc agguU UCGU CCAUA  UCAAGGAUg      u
g    -  -     C    G     CU         aaagac 

>nvi-mir-124 (-33.30)   [nvi-miR-124:51-73]

u    cuu            ggcuuccaugugccaag 
 gcuc   gcguucacugcg                 u
 ||||   ||||||||||||                 u
 cgaG   CGUAAGUGGCGC                 u
g    AAC            ACGGAAUacuuaaaaau 

>nvi-mir-315 (-38.10)   [nvi-miR-315:12-33]

       -a  c  U            A       ----   a 
gcucucu  ug UU UGAUUGUUGCUC GAAAGCc    ucg u
|||||||  || || |||||||||||| |||||||    |||  
ugagagg  ac aa acuaauaacggg cuuucgg    agc a
       gc  u  u            -       ucau   u 

>nvi-mir-219 (-44.20)   [nvi-miR-219:20-42]

-----  g    ug  u     ua    U    AA            ---   gug 
     uc gcgu  uc cgggc  UGAU GUCC  ACGCAAUUCUUG   ucu   c
     || ||||  || |||||  |||| ||||  ||||||||||||   |||    
     ag cgcg  ag gcucg  acua cagg  uguguuaagaac   aga   c
caacu  g    --  -     cg    -    gg            cau   guu 

>nvi-mir-133 (-34.90)   [nvi-miR-133:57-78]

         g  -            cac  gu     auaa  -  c 
uaauguuaa cu uagcugguugaa   gg  caaau    cg ca g
||||||||| || ||||||||||||   ||  |||||    || ||  
auuacaguu ga GUCGACCAACUU   CC  GUUua    gc gu a
         -  U            -CC  UG     ---c  a  u 

>nvi-mir-1 (-36.90)   [nvi-miR-1:50-71]

cc      cu            c    uuc     -  gc 
  gagcgu  guuccgugcuuc uuac   ccaua gu  a
  ||||||  |||||||||||| ||||   ||||| ||  c
  cucgcg  cGAGGUAUGAAG AAUG   GGUau ca  g
gu      -c            A    UAA     g  gu 

>nvi-mir-282 (-39.50)   [nvi-miR-282:15-42]

auau     ga g           CUC       U     GUca  ga 
    cgagc  c uGAUUUAGCCU   CUAGGCU UGUCU    gu  a
    |||||  | |||||||||||   ||||||| |||||    ||   
    gcucg  g gcuggauugga   gauccga acaga    ca  a
-cuu     -- g           uaa       u     ---g  aa 

>nvi-mir-307 (-34.40)   [nvi-miR-307:78-97]

ccagauggcgaccgcgugaa         ccu    -      -  -----u    -  gaa 
                    cucacucaa   gggu gugaug cu      gccc gu   a
                    |||||||||   |||| |||||| ||      |||| ||    
                    GAGUGAGUU   UCCA CACUac gg      cggg ca   u
-------------------c         -UU    A      u  cguucc    a  agu 

>nvi-mir-210 (-42.22)   [nvi-miR-210:51-71]

u   --     gugc        gc   -         uuaga 
 gga  cccca    agcugcug  cac ugcacaaga     c
 |||  |||||    ||||||||  ||| |||||||||     a
 ccu  ggggu    UCGGCGAC  GUG GCGUGUUcu     u
g   uc     aguA        -A   U         cagaa 

>nvi-bantam (-30.10)   [nvi-bantam:50-72]

-----auaua       cu                 ga    ugua 
          gacgaaa  gguuuucacaaugauuu  caga    u
          |||||||  |||||||||||||||||  ||||     
          uuguuUU  UCGAAAGUGUUACUAGA  GUcu    u
gacuuaagcc       AG                 --    uagu 

>nvi-mir-9a (-40.00)   [nvi-miR-9a:15-37]

u    c   ca  uU       U        G     -  uug 
 ggcg gga  uu  CUUUGGU AUCUAGCU UAUGA gu   g
 |||| |||  ||  ||||||| |||||||| ||||| ||    
 ccgc ccu  ag  gaggcca uggaucga auacu ca   u
a    u   ag  uu       u        a     a  ugu 

>nvi-mir-8 (-31.44)   [nvi-miR-8:53-75]

     a    uuu       -   g     c      uuacau 
ggagu ucug   acaucuu acc ggcag auuaga      u
||||| ||||   ||||||| ||| ||||| ||||||       
ccuua ggac   UGUAGAA UGG CUGUC UAAUcu      u
     -    ugC       A   A     A      uuuaag 

>nvi-mir-375 (-38.20)   [nvi-miR-375:65-86]

cuca   au     u        cca    u  c     uca       g    a 
    gca  aggcu caccuggu   ucga cc aacga   auaaacu uguu u
    |||  ||||| ||||||||   |||| || |||||   ||||||| ||||  
    ugu  uccga guggauuA   AGCU GG UUGCU   UGUUUga acaa u
---c   --     -        UUG    C  C     ---       -    a 

>nvi-mir-927 (-28.90)   [nvi-miR-927:21-43]

----agacaauaag   aua           A   CU       A   guuu 
              gug   uuugUUUUAGA UUC  ACGCUUU CCg    u
              |||   ||||||||||| |||  ||||||| |||    u
              cac   aaacaaaaucu aag  ugcgaaa ggu    a
gucgcucaacaaua   -ga           g   uu       c   aaaa 

>nvi-mir-252 (-40.50)   [nvi-miR-252:16-37]

aa     uc     cC        A U  C       -  acua    ggg 
  ucccg  cuguu  UAAGUACU G GC GCAGGAG ug    gauu   c
  |||||  |||||  |||||||| | || ||||||| ||    ||||    
  agggc  gguaa  auucguga c cg cguccuc gc    uuaa   u
--     uu     cu        a u  u       u  gcca    aga 

>nvi-mir-932 (-46.40)   [nvi-miR-932:16-37]

--------a      uu   u     A     UA    A      ua     aa 
         ggcgcg  gcc cuUCA UUCCG  GUGC UUGCAG  gauuu  a
         ||||||  ||| ||||| |||||  |||| ||||||  |||||  a
         cugugc  cgg ggagu agggc  cacg aacguc  uuaga  g
gcuacuaag      uu   c     g     gc    -      --     aa 

>nvi-mir-263b (-38.50)   [nvi-miR-263b:11-30]

 ug      cU     C  G    A     a   g    gu 
c  gcgggu  UGGCA UG AAGA UUCAC gau ugcg  u
|  ||||||  ||||| || |||| ||||| ||| ||||   
g  cgccca  accgu ac uucu aggug cua augu  g
 gu      uu     a  g    -     -   -    gu 

>nvi-mir-993 (-42.56)   [nvi-miR-993:85-107]

gcgagagacgacgguguuugcgaaagauaggcacauucgugaucuac        uc          uagaau 
                                               ccuguaga  cgggcuuuug      u
                                               ||||||||  ||||||||||      g
                                               GGACAUCU  GCUCGAAGac      u
------------------------------uacaguaggcauUCUAU        CU          uauaga 

>nvi-mir-928 (-40.30)   [nvi-miR-928:12-32]

-----------------------------------     guacuc        --  AA   C   AA 
                                   gucca      GUGGCUGU  GG  GCU GCG  c
                                   |||||      ||||||||  ||  ||| |||  g
                                   caggu      uaucgaca  cc  uga cgc  u
caggccggugcucgaggccgcggcacgagcgcaag     ---auc        uu  gc   -   ag 

>nvi-mir-3477 (-40.20)   [nvi-miR-3477:60-80]

       ucu   ua  u         c     c       --gu  g 
gguagug   gug  gg aaucucaug gguaa ugugagc    gu a
|||||||   |||  || ||||||||| ||||| |||||||    || a
ccaucac   cac  cC UUAGGGUGC CCAUU AUACucg    ca a
       --c   --  U         U     -       guau  a 

>nvi-mir-3478 (-29.20)   [nvi-miR-3478:10-33]

g      auA    -AU      UA CC   G   uauuu 
 aggcug   UUGG   GAAUCC  C  GGU AGg     a
 ||||||   ||||   ||||||  |  ||| |||      
 uccgac   agcc   cuuagg  g  cca ucc     u
-      gac    cac      gc aa   a   uuuaa 

>ssc-mir-744 (-27.60)   [ssc-miR-744:7-28]

----------------   gg     -  --G      CU   -AG   u 
                gca  gUGCG GG   CUAGGG  AAC   CAg c
                |||  ||||| ||   ||||||  |||   ||| u
                cgu  cacgc cc   gguccu  uug   guc u
cuccaaucaccguugu   -a     a  aaa      --   gaa   a 

>ssc-mir-22 (-34.70)   [ssc-miR-22-5p:11-32] [ssc-miR-22-3p:49-70]

---   cc               -     A      u  ccu 
   gag  gcaguAGUUCUUCAG UGGCA GCUUUA gu   g
   |||  ||||||||||||||| ||||| |||||| ||   a
   cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
cgu   -c               G     -      -  acc 

>ssc-mir-363 (-28.90)   [ssc-miR-363:52-74]

-  u   gu         ca  a         --ga   gu 
 gc guu  cggguggau  cg ugcaauuuu    uua  a
 || |||  |||||||||  || |||||||||    |||   
 cg caA  GUCUACCUA  GC ACGUUAAaa    gau  u
a  c   AU         UG  -         agag   ac 

>ssc-mir-299 (-48.60)   [ssc-miR-299:15-35]

c      ug     A                      uu 
 gguacu  aagaa UGGUUUACCGUCCCACAUACau  u
 ||||||  ||||| ||||||||||||||||||||||  g
 cuaugg  uucuu gccaaauggcaggguguaugua  c
c      --     c                      ua 

>ssc-mir-338 (-37.60)   [ssc-miR-338:48-69]

cc      cc      u   -         -   ga  a 
  guccuc  caacaa auc cuggugcug agu  ug c
  ||||||  |||||| ||| ||||||||| |||  || a
  cgggag  GUUGUU UAG GACUACGAC Uca  gc c
ga      aa      U   U         C   ac  a 

>ssc-mir-369 (-68.40)   [ssc-miR-369:123-143]

u   ag               ua      cuuuau      u  ag               ua      cuu g 
 uga  ggagaucgaccgugu  uauucg      gguacu ga  ggagaucgaccgugu  uauucg   g c
 |||  |||||||||||||||  ||||||      |||||| ||  |||||||||||||||  ||||||   | u
 acu  UUUCUAGUUGGUACA  AUAAgc      cuauga cu  uuucuaguugguaca  auaagc   c g
g   cu               UA      uucagu      -  cu               ua      -uu a 

>ssc-mir-376a (-21.31)   [ssc-miR-376a*:13-35] [ssc-miR-376a:50-70]

      u    g  A    C    U      GUACauua 
gguauu aaaa GU GAUU UCCU CUAUGA        u
|||||| |||| || |||| |||| ||||||        u
cuauga uuuU CA CUAA AGGA GAUACU        u
      c    G  C    A    -      Aauuauua 

>ssc-mir-450c (-36.10)   [ssc-miR-450c:14-35] [ssc-miR-450c*:49-70]

     u       UUU     U              uaa 
ggcac aaacuau   UGCGA GUGUUCCUAAUACg   u
||||| |||||||   ||||| ||||||||||||||   c
cugug uuugaUG   ACGUU UACAAGGGUUAugu   u
     u       CUU     U              gaa 

>ssc-mir-758 (-29.50)   [ssc-miR-758:46-66]

     a     --    u      aga   c   - uuu 
gguac ugagg  uggu gaccag   gca acg c   a
||||| |||||  |||| ||||||   ||| ||| |    
cuaug acucc  AUCA CUGGUC   UGU Ugc g   u
     -     CA    C      CAG   U   c ugu 

>ppy-mir-1-1 (-30.00)   [ppy-miR-1:46-67]

u    a                gc     ---   a 
 ggga acauacuucuuuauau  ccaua   ugg c
 |||| ||||||||||||||||  |||||   ||| c
 cucU UGUAUGAAGAAAUGUA  GGUau   auc u
a    A                -A     cga   g 

>ppy-let-7a-1 (-35.60)   [ppy-let-7a:6-27]

     U   GU                uuagggucacac 
uggga GAG  AGUAGGUUGUAUAGUU            c
||||| |||  ||||||||||||||||            c
auccu uuc  ucaucuaacauaucaa            a
     -   ug                uagagggucacc 

>ppy-let-7a-2 (-25.20)   [ppy-let-7a:5-26]

   uU   G   U             uagaa ua a 
agg  GAG UAG AGGUUGUAUAGUU     u  c u
|||  ||| ||| |||||||||||||     |  | c
ucc  uuc auc uccgacaugucaa     a  g a
   -u   g   c             --uag gg a 

>ppy-let-7a-3 (-34.40)   [ppy-let-7a:4-25]

   U   GU                ---------        
ggg GAG  AGUAGGUUGUAUAGUU         uggggcu 
||| |||  ||||||||||||||||         |||||| c
ucc uuc  ucaucuaacauaucaa         gucccgu 
   u   ug                uaggguauc        

>ppy-let-7b (-47.00)   [ppy-let-7b:6-27]

     U                     ----  ---a      u 
cgggg GAGGUAGUAGGUUGUGUGGUU    uc    gggcag g
||||| |||||||||||||||||||||    ||    |||||| a
guccc uuccgucauccaacauaucaa    ag    cccguu u
     -                     uaga  acuc      g 

>ppy-let-7c (-33.50)   [ppy-let-7c:11-32]

  a      uU   G   U             ua  g ua a 
gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
|| ||||||  ||| ||| |||||||||||||  || |  | c
cg agguuc  uuc auc uccaacaugucaa  uu a  g c
  -      cu   g   u             --  g gg u 

>ppy-let-7d (-42.60)   [ppy-let-7d:8-29]

       A              C      uuagggcagggauu 
ccuagga GAGGUAGUAGGUUG AUAGUU              u
||||||| |||||||||||||| ||||||               
ggauucu uuccgucguccagc uaucaa              u
       -              a      uggaggaacacccg 

>ppy-let-7e (-37.80)   [ppy-let-7e:8-29]

  c   cU   G                U  ----gga  a 
cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg c
|| |||  ||| |||||||||||||||| ||       ||  
gg ccc  uuc auccuccggcauauca cu       cc a
  a   cu   g                -  agaggaa  c 

>ppy-let-7f-1 (-43.30)   [ppy-let-7f:7-28]

    a UG                      ---------       u 
ucag g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| |  ||||||||||||||||||||||         ||||||| a
aguc c  uccguuaucuaacauaucaaua         ucccauu u
    - cu                      gaggacuug       u 

>ppy-let-7f-2 (-40.70)   [ppy-let-7f:8-29]

u      U   GU                uuagggucauac 
 guggga GAG  AGUAGAUUGUAUAGUU            c
 |||||| |||  ||||||||||||||||             
 cacccu uuc  ucaucugacauaucaa            c
g      -   ug                uagagguucuac 

>ppy-let-7g (-40.50)   [ppy-let-7g:5-26]

a   U        A            ugagg    -a  a    a 
 ggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
 ||| |||||||| ||||||||||||     ||||  || ||||  
 ccg uuccguca cggacaugucaa     uaga  ac augg c
a   -        c            -----    gg  -    c 

>ppy-let-7i (-39.60)   [ppy-let-7i:6-27]

c    U                 U   --------  u     ugu 
 uggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
 |||| ||||||||||||||||| |||        || |||||   a
 aucg uuccgucaucgaacgcg caa        uc gcccg   c
-    -                 u   uagaggug  -     uua 

>ppy-mir-7-3 (-39.10)   [ppy-miR-7:31-51]

agauua   u  cugu     a        U  AA A  A       U      c  au 
      gag gg    ggucu gugcugug GG  G CU GUGAUUU GUUguu ug  g
      ||| ||    ||||| |||||||| ||  | || ||||||| |||||| ||   
      cuu cc    ucaga cgcgauac cc  c ga cacugaa caacag au  u
---cag   c  ----     -        u  gg c  -       -      u  ca 

>ppy-mir-9-1 (-42.00)   [ppy-miR-9:16-38]

c       guug   UC               G      u  ug 
 gggguug    uua  UUUGGUUAUCUAGCU UAUGAg gg  u
 |||||||    |||  ||||||||||||||| |||||| ||  g
 ccccaau    aau  aagccaauagaucga auacuu cu  g
a       -aaa   ga               a      -  ga 

>ppy-mir-9-2 (-40.10)   [ppy-miR-9:16-38]

g    u     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aau  aagccaauagaucga auacuu  g u
a    -     a   ga               a      cu g 

>ppy-mir-9-3 (-41.10)   [ppy-miR-9:16-38]

g    cc       -  C               G     gu  ca 
 gagg  cguuucu cU UUUGGUUAUCUAGCU UAUGA  gc  c
 ||||  ||||||| || ||||||||||||||| |||||  ||   
 cucu  guaaaga ga aagccaauagaucga auacu  cg  a
a    ca       u  -               a     gc  ag 

>ppy-mir-10b (-44.70)   [ppy-miR-10b:27-49]

cca      guaa     u        A    G     C          -ug   u 
   gagguu    cguug cuauauaU CCCU UAGAA CGAAUUUGUG   gua c
   ||||||    ||||| |||||||| |||| ||||| ||||||||||   |||  
   cuucaa    guagc gguauaua gggg aucuu gcuuagacac   uau c
--a      aaac     u        a    -     a          uga   a 

>ppy-mir-16-2 (-31.40)   [ppy-miR-16:10-29]

  uc    cU         UA        - cg     aa 
gu  cacu  AGCAGCACG  AAUAUUGG g  uagug  a
||  ||||  |||||||||  |||||||| |  |||||  u
ca  guga  ucgucgugu  uuauaacc c  auuau  a
  gu    uu         ca        a aa     au 

>ppy-mir-18b (-19.80)   [ppy-miR-18b:6-28]

ug     --   U    C   U     UA  --g     
  uguUA  AGG GCAU UAG GCAGU  Gu   aagc 
  |||||  ||| |||| ||| |||||  ||   ||| a
  acggu  ucc cgua auc cguca  ua   uucg 
--     cu   c    a   c     uc  aga     

>ppy-mir-20b (-29.80)   [ppy-miR-20b:6-28]

     -CA           G     -GU    uu 
aguac   AAGUGCUCAUA UGCAG   AGuu  g
|||||   ||||||||||| |||||   ||||  g
ucaug   uucacggguau auguc   ucag  c
     acc           g     auc    ua 

>ppy-mir-26a-2 (-42.24)   [ppy-miR-26a:14-35]

      gg ug  UU         C          guuucc 
ggcugu  c  ga  CAAGUAAUC AGGAUAGGCU      a
||||||  |  ||  ||||||||| ||||||||||       
ucgacg  g  cu  guucauuag ucuuauccgg      u
      ga gu  uu         u          aguguc 

>ppy-mir-26b (-40.10)   [ppy-miR-26b:12-32]

    ga   -   U        UC           u ug 
ccgg  ccc agU CAAGUAAU  AGGAUAGGUug g  c
||||  ||| ||| ||||||||  ||||||||||| |   
ggcc  ggg ucg guucauua  ucuuguccgac c  u
    ag   c   -        cc           - ug 

>ppy-mir-27b (-50.40)   [ppy-miR-27b:61-81]

-    -    aaca                  auug        ugau     
 accu cucu    aggugcagagcuuagcug    gugaacag    uggu 
 |||| ||||    ||||||||||||||||||    ||||||||    ||| u
 ugga gaga    uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
g    a    --ag                  --GA        --uc     

>ppy-mir-29c (-35.40)   [ppy-miR-29c:54-75]

a         -  ggc           ucc       ---     u 
 ucucuuaca ca   ugaccgauuuc   ugguguu   cagag c
 ||||||||| ||   |||||||||||   |||||||   ||||| u
 gggggaugu gu   AUUGGCUAAAG   ACCACGA   guuuu g
a         a  ---           UUU       Ucu     u 

>ppy-mir-30b (-37.60)   [ppy-miR-30b:17-38]

a     uu      caU          U  -A        uaaua 
 ccaag  ucaguu   GUAAACAUCC AC  CUCAGCUg     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   cauuuguagg ug  gggucggu     a
a     --      cuu          -  ga        uaggu 

>ppy-mir-30c-1 (-35.40)   [ppy-miR-30c:17-39]

a     cu    ugu U       U   ACA         ---g  a 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    ug g
 |||||  ||||   | ||||||| |||   |||||||||    ||  
 gguac  cguc   c cauuugu ggg   gagggucgg    ac c
a     --    uuc u       u   --a         ugga  u 

>ppy-mir-30d (-28.10)   [ppy-miR-30d:6-27]

guu  U         CCC           gua  ac 
   gu GUAAACAUC   GACUGGAAGcu   ag  a
   || |||||||||   |||||||||||   ||   
   cg cguuuguag   cugacuuucga   uc  c
cau  u         --a           --a  ga 

>ppy-mir-30e (-53.00)   [ppy-miR-30e:17-38]

g        uu  ua            UU           g aag u 
 ggcagucu  gc  cUGUAAACAUCC  GACUGGAAGcu u   g g
 ||||||||  ||  ||||||||||||  ||||||||||| |   |  
 ccgucgga  cg  gacauuuguagg  cugacuuucga g   c u
a        --  gc            --           g aga u 

>ppy-mir-33b (-44.00)   [ppy-miR-33b:17-36]

---  g   c   --  -   c -    -     UU   -     -  g 
   gc agg ggc  gc ccg G UGCA UGCUG  GCA UGCAC gu u
   || ||| |||  || ||| | |||| |||||  ||| ||||| || u
   cg ucc ccg  cg ggc c acgu acggc  cgu acgug cg g
cca  g   -   gc  a   c g    g     uc   g     g  a 

>ppy-mir-34b (-33.80)   [ppy-miR-34b:50-71]

     cg    -gua       uca    c        -  g 
gugcu  guuu    ggcagug   uuag ugauugua cu u
|||||  ||||    |||||||   |||| |||||||| || g
cacgg  caaa    CCGUCAC   AAUC ACUAACau gg a
     aa    acUA       CUC    -        u  u 

>ppy-mir-34c (-30.00)   [ppy-miR-34c-5p:13-35] [ppy-miR-34c-3p:46-67]

     ag     A   A    A     C      C  a 
agucu  uuacu GGC GUGU GUUAG UGAUUG ua u
|||||  ||||| ||| |||| ||||| |||||| ||  
uuaga  aauGG CCG CACA CAAUC ACUAAc au a
     aa     A   G    C     -      c  g 

>ppy-mir-92b (-63.42)   [ppy-miR-92b:61-82]

c     cc   c    g     ga       c            uuuuu 
 gggcc  ggg gggc ggagg  cgggacg ggugcaguguug     u
 |||||  ||| |||| |||||  ||||||| ||||||||||||     c
 cccgg  ccu cccg CCUCC  GCCCUGC UCACGUUAUaac     c
-     --   c    g     -G       -            cgccc 

>ppy-mir-96 (-34.40)   [ppy-miR-96:9-31]

ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCUu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg ua aaccguga cgugua  aacgag   cgc  c
aaa  g  u        -      cu      ucu   cu 

>ppy-mir-101-1 (-36.20)   [ppy-miR-101:47-67]

u   cuggc                  a    gucca 
 gcc     ucaguuaucacagugcug ugcu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uaggA                  -    aaauc 

>ppy-mir-101-2 (-31.40)   [ppy-miR-101:49-69]

  ug  c                    c a    guaua 
ac  uc uuuuucgguuaucaugguac g ugcu     u
||  || |||||||||||||||||||| | ||||      
ug  gg aagAAGUCAAUAGUGUCAUG C AUgg     c
  gu  u                    A -    aaagu 

>ppy-mir-103-2 (-28.10)   [ppy-miR-103:48-70]

uu  g      --   u  u           ----    ua 
  gu cuuuca  gcu cu uacagugcugc    cuug  g
  || ||||||  ||| || |||||||||||    ||||  c
  ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
ac  a      AU   -  C           Aacu    uu 

>ppy-mir-105-2 (-41.30)   [ppy-miR-105:13-35]

ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUGGUg c  c
   ||||||||| || ||||||||||  |||||||| |  u
   ugugguauc gu uacgaguuug  ggcaccac g  u
auc         -  g          ua        - ua 

>ppy-mir-122 (-46.60)   [ppy-miR-122:15-36]

c        -      GG       C           --u  c 
 cuuagcag agcugU  AGUGUGA AAUGGUGUUUG   gu u
 |||||||| ||||||  ||||||| |||||||||||   ||  
 ggaucguc ucgaua  ucacacu uuaccgcaaac   ca a
c        a      aa       a           uau  a 

>ppy-mir-124-2 (-40.30)   [ppy-miR-124:53-72]

u    -   c    - c        a   ga        uaaug 
 gagg gcc cucu g guguucac gcg  ccuugauu     u
 |||| ||| |||| | |||||||| |||  ||||||||      
 cucc cgg gaga C CGUAAGUG CGC  GGAAUuaa     c
c    g   a    a -        G   AC        cauau 

>ppy-mir-125a (-48.10)   [ppy-miR-125a-5p:15-38] [ppy-miR-125a-3p:53-74]

u     u u     UC  UG   C    UA        ----  a 
 gccag c cuagg  CC  AGA CCUU  ACCUGUGA    gg c
 ||||| | |||||  ||  ||| ||||  ||||||||    ||  
 cgguc g gguCC  GG  UCU GGAG  UGGACAcu    cc a
c     u c     GA  GU   U    --        ggga  u 

>ppy-mir-126 (-33.20)   [ppy-miR-126:52-73]

cgcug c     - a           u       c cug   c 
     g gacgg g cauuauuacuu ugguacg g   uga a
     | ||||| | ||||||||||| ||||||| |   |||  
     c cugcc C GUAAUAAUGAG GCCAUGC c   acu c
---ca -     G -           U       U -aa   u 

>ppy-mir-128-2 (-39.40)   [ppy-miR-128:52-72]

u ug       a          aua      ac    g gag 
 g  caguggg aggggggccg   cacugu  gaga u   u
 |  ||||||| ||||||||||   ||||||  |||| |    
 u  gucaucc UUUCUCUGGC   GUGACA  CUcu g   a
c gu       c          CAA      --    g acg 

>ppy-mir-129-1 (-29.40)   [ppy-miR-129:5-25] [ppy-miR-129-1*:49-70]

    -       C   CU      G   uu cu  c 
ggau CUUUUUG GGU  GGGCUU Cug  c  cu a
|||| ||||||| |||  |||||| |||  |  ||  
ucUA GAAAAAC CCA  CCCGAA gac  g  ga a
    U       C   UU      g   -u au  c 

>ppy-mir-129-2 (-48.80)   [ppy-miR-129:15-35] [ppy-miR-129-2*:57-78]

u             -       C   CU      ---     acau 
 gcccuucgcgaau CUUUUUG GGU  GGGCUU   GCugu    a
 ||||||||||||| ||||||| |||  ||||||   |||||     
 cgggaggcguuUA GAAAAAC CCA  CCCGAA   cgaua    a
g             C       C   UU      ggc     acuc 

>ppy-mir-130a (-42.60)   [ppy-miR-130a:55-76]

u     -       a        c      ug  a   ucu  a 
 gcugc uggccag gcucuuuu acauug  cu cug   gc c
 ||||| ||||||| |||||||| ||||||  || |||   ||  
 ugaug gccgguU CGGGAAAA UGUAAC  GA gau   ug c
g     u       A        U      GU  C   cac  u 

>ppy-mir-130b (-36.20)   [ppy-miR-130b:51-72]

      c    ca       cc         a  auggg  g 
ggccug ccga  cucuuuc  uguugcacu cu     cc c
|||||| ||||  |||||||  ||||||||| ||     ||  
cuggac ggcU  GGGAAAG  GUAACGUGA ga     gg u
      u    AC       UA         C  ----a  g 

>ppy-mir-132 (-48.40)   [ppy-miR-132:59-80]

c   cccc    -  c a    a         uuc          --gu g 
 cgc    gcgu cu c gggc accguggcu   gauuguuacu    g g
 |||    |||| || | |||| |||||||||   ||||||||||    |  
 gcg    cgca ga g cccG UGGUACCGA   CUGACAAUgg    c a
c   cacc    c  c c    C         CAU          aggu a 

>ppy-mir-133c (-47.50)   [ppy-miR-133c:59-80]

g  a    --     uuu    g       aa  u  a        g cug 
 gg gcca  aaugc   gcua agcuggu  aa gg accaaauc a   u
 || ||||  |||||   |||| |||||||  || || |||||||| |    
 cc cggu  uuacg   cgau UCGACCA  UU CC UGGUUUag u   c
g  g    ag     ugu    G       AC  C  C        g aac 

>ppy-mir-133b (-49.70)   [ppy-miR-133b:66-87]

----ccucagaagaaaga    --       c        ca  c  a      u  g      
                  ugcc  cccugcu uggcuggu  aa gg accaag cc ucuuc 
                  ||||  ||||||| ||||||||  || || |||||| || |||| c
                  acgg  gggacga AUCGACCA  UU CC UGGUUU gg agagu 
agagguucaugaaccgua    uc       c        AC  C  C      -  -      

>ppy-mir-135a-1 (-44.72)   [ppy-miR-135a:17-39]

a g         u u          UU            uucua 
 g ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
 | ||||||||| | ||||||||||  ||||||||||||     u
 c ggggcggca g ggugccgagg  uagggauauacu     g
a a         c c          -u            cacuc 

>ppy-mir-135b (-47.20)   [ppy-miR-135b:16-38]

-------ca    -                   CAU          --   cu 
         cucu gcuguggccUAUGGCUUUU   UCCUAUGUGA  uug  g
         |||| |||||||||||||||||||   ||||||||||  |||   
         ggga ugacaucggguaccgaaaa   gggauguacu  aac  u
ccucgaacg    g                   -uc          ca   cc 

>ppy-mir-137 (-49.10)   [ppy-miR-137:59-81]

g u  u   --           ug   g           ug a     -  g 
 g cc cug  acucucuucgg  acg guauucuuggg  g uaaua cg a
 | || |||  |||||||||||  ||| |||||||||||  | ||||| || u
 c gg gac  ugagaggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
a -  c   ca           GA   G           GU -     u  a 

>ppy-mir-138-2 (-36.00)   [ppy-miR-138:10-32]

c u   u  AG             UCA     -ac   c  cg 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg ug  gaccacagcacuu   ucggc   uuc uc  a
a u   u  -g             -ua     cca   -  cu 

>ppy-mir-139 (-34.90)   [ppy-miR-139-5p:7-28] [ppy-miR-139-3p:44-65]

gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUCCAGu u  c
   ||||||| ||| || |||||||||||| |  u
   aUGAGGU GUC CG GCGCAGAGGucg a  c
-ca       U   C  -            g gg 

>ppy-mir-140 (-55.00)   [ppy-miR-140-5p:23-44] [ppy-miR-140-3p:62-82]

u       ucucu        -  A             A       uu   uc 
 gugucuc     guguccug cC GUGGUUUUACCCU UGGUAGg  acg  a
 |||||||     |||||||| || ||||||||||||| |||||||  |||   
 cacgggg     cauaggac GG CACCAAGAUGGGA ACCAUcu  ugu  u
c       ----c        a  -             C       --   cg 

>ppy-mir-142 (-44.70)   [ppy-miR-142-5p:16-36] [ppy-miR-142-3p:52-74]

g        g   c           A         Uaa ag a 
 acagugca uca cCAUAAAGUAG AAGCACUAC   c  c c
 |||||||| ||| ||||||||||| |||||||||   |  |  
 ugucaugu agu GGUAUUUCAUC UUUGUGAUG   g  g u
g        g   A           C         -Ug ga g 

>ppy-mir-146a (-42.70)   [ppy-miR-146a:21-42]

c     -----u      u     uU            C        g  uc 
 cgaug      guaucc cagcu  GAGAACUGAAUU CAUGGGUU ug  u
 |||||      |||||| |||||  |||||||||||| |||||||| ||  g
 gcugc      uauagg gucga  uucuugacuuaa guguccag ac  u
u     ugucuc      -     -c            a        -  ug 

>ppy-mir-146b (-37.90)   [ppy-miR-146b-5p:9-30] [ppy-miR-146b-3p:46-67]

  u      G        AU        CU  ga  u 
cc ggcacU AGAACUGA  UCCAUAGG  gu  gc c
|| |||||| ||||||||  ||||||||  ||  ||  
gg ccguGG UCUUGACU  AGGUGUCC  Ua  cg u
  c      -        -C        CG  aa  a 

>ppy-mir-147b (-28.50)   [ppy-miR-147b:49-70]

--  u    c   ug   a            aacuagauu      
  ua aaau uag  gaa cauuucugcaca         cugga 
  || |||| |||  ||| ||||||||||||         |||| c
  au uuua AUC  CUU GUAAAGGCGUGU         Gacca 
gg  u    c   GU   C            ---------      

>ppy-mir-148a (-28.20)   [ppy-miR-148a:44-65]

              -  -a    cc    -   ag 
gaggcaaaguucug ag  cacu  gacu cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 

>ppy-mir-148b (-35.00)   [ppy-miR-148b:63-84]

caagcac  uu   a       ug         u  a    ca    gugg u 
       ga  agc uuugagg  aaguucugu au cacu  ggcu    c c
       ||  ||| |||||||  ||||||||| || ||||  ||||    | u
       cu  ucg aagcucU  UUCAAGACA UA GUGA  CUga    g c
-----au  -u   a       GU         C  C    --    --aa u 

>ppy-mir-149 (-45.30)   [ppy-miR-149:15-37]

gccggc    g   U U G      G     A     ---g  uu 
      gccc agc C G CUCCGU UCUUC CUCCC    ug  u
      |||| ||| | | |||||| ||||| |||||    ||   
      cggg ucg g c ggggca ggagg gaggg    ac  g
---cga    g   u u g      g     -     agga  cu 

>ppy-mir-150 (-57.50)   [ppy-miR-150:16-37]

c      u  -            AC   U       U -   g 
 ucccca gg cccugUCUCCCA  CCU GUACCAG G cug g
 |||||| || ||||||||||||  ||| ||||||| | |||  
 aggggu cc gggacagggggu  gga caugguc c gac c
c      -  a            cc   -       c a   u 

>ppy-mir-151 (-46.20)   [ppy-miR-151-5p:11-31] [ppy-miR-151-3p:47-67]

--------------u      c            CA          u ucu 
               uuccug ccUCGAGGAGCU  CAGUCUAGUa g   c
               |||||| ||||||||||||  |||||||||| |    
               agggac GGAGUUCCUCGA  GUCAGAUCau c   a
uccacucauacuggu      a            -A          c ccu 

>ppy-mir-153-2 (-41.30)   [ppy-miR-153:53-74]

a     gg      -             gu       -a  aa 
 gcggu  ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g     aa      U             AU       cc  ag 

>ppy-mir-155 (-29.92)   [ppy-miR-155:4-26]

             U    A        uuuac 
cugUUAAUGCUAA CGUG UAGGGGUu     c
||||||||||||| |||| ||||||||     u
gacaauuacgauu guac auccucag     c
             -    -        ucaac 

>ppy-mir-181a-2 (-54.00)   [ppy-miR-181a:39-61]

agaagggcuaucaggccagccuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguucc ugu aguugc  cagucac caaa    u
------------------------a             a   c      --       -    aaag 

>ppy-mir-181b-2 (-34.70)   [ppy-miR-181b:16-38]

cuga   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUu ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     guaaguagc  uagucacucaa cu  g
acaa   a     caaac         --           -  aa 

>ppy-mir-181c (-45.16)   [ppy-miR-181c:27-48]

c   -aaauuug   ag     g    AA        CU       A     ggca 
 gga        cca  gguuu gggg  CAUUCAAC  GUCGGUG GUuug    g
 |||        |||  ||||| ||||  ||||||||  ||||||| |||||    c
 ccu        ggu  ccaga uccc  gugaguug  cagcuac caaac    u
u   accguuaa   --     g    ag        -c       -     ggac 

>ppy-mir-181d (-67.10)   [ppy-miR-181d:35-57]

-     --      -     ----aca   aa       aucA         G UG          guga  a c 
 ucccc  uccccu aggcc       gcc  ggucaca    ACAUUCAUU U  UCGGUGGGUu    gg c g
 |||||  |||||| |||||       |||  |||||||    ||||||||| |  ||||||||||    || |  
 agggg  agggga uucgg       cgg  ucggugu    uguaaguag g  ggccacccag    cc g a
c     ua      a     cacagac   -g       -cac         g --          ---a  - g 

>ppy-mir-183 (-41.50)   [ppy-miR-183:24-45]

cagag    ac  -----         g      --AC     GA        --   ac 
     cgug  uc     cuguucugu UAUGGC    UGGUA  AUUCACUg  uga  a
     ||||  ||     ||||||||| ||||||    |||||  ||||||||  |||   
     gcac  ag     gacgagaca auaccg    gccau  uaagugac  acu  g
----a    cu  acaga         a      ggaa     --        ug   cu 

>ppy-mir-185 (-53.10)   [ppy-miR-185:15-36]

a     c       UG   A     G         Au  uc 
 ggggg gagggau  GAG GAAAG CAGUUCCUG  gg  c
 ||||| |||||||  ||| ||||| |||||||||  ||   
 cccuc cuuccug  cuc cuuuc gucggggac  cc  c
a     c       gu   -     g         -c  uc 

>ppy-mir-186 (-41.24)   [ppy-miR-186:15-36]

u     u                 U     U      ucuggu 
 gcuug aacuuucCAAAGAAUUC CCUUU GGGCUu      u
 ||||| ||||||||||||||||| ||||| ||||||       
 cgagu uugaaggguuuuuuaag ggaaa cccgaa      u
u     -                 u     -      uuuuau 

>ppy-mir-190 (-32.50)   [ppy-miR-190:15-36]

u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cguuc g gaca c  uauacaaacuauaua  ucaac    u
c     u u    u cu               --     cuaa 

>ppy-mir-190b (-32.60)   [ppy-miR-190b:11-31]

-    u     -U               G     -   aa 
 ugcu cugug  GAUAUGUUUGAUAUU GGUUg uuu  u
 |||| |||||  ||||||||||||||| ||||| |||   
 acga gacau  uuauacaaacuguaa ucaac aag  u
g    c     uc               a     c   ga 

>ppy-mir-191 (-49.00)   [ppy-miR-191:16-38]

c   u   c      CA         C  AA       uu  -  c 
 ggc gga agcggg  ACGGAAUCC AA  GCAGCUG  gu cu c
 ||| ||| ||||||  ||||||||| ||  |||||||  || ||  
 ccg ccu ucgucc  ugcuuuagg uu  cgucgac  ua ga a
u   u   c      cc         -  cg       cu  c  g 

>ppy-mir-192 (-39.49)   [ppy-miR-192:24-44]

gccgagacc   u  --   g g  C         -     A       ugcucuc 
         gag gc  aca g cu UGACCUAUG AAUUG CAGCCag       g
         ||| ||  ||| | || ||||||||| ||||| |||||||        
         cuc cg  ugu u ga acuggauac uuaac gucgguc       u
cgaccguaa   -  cu   a g  c         c     c       uccccuc 

>ppy-mir-193a (-52.80)   [ppy-miR-193a-5p:21-42] [ppy-miR-193a-3p:55-76]

cgaggau   a             U     CG   G  A   aggu 
       ggg gcugagggcUGGG CUUUG  GGC AG UGA    g
       ||| ||||||||||||| |||||  ||| || |||     
       ccc cggcuccUGACCC GAAAC  CCG UC Acu    u
------g   c             U     AU   G  A   aggc 

>ppy-mir-193b (-43.10)   [ppy-miR-193b:51-72]

   gu       u    gu         g  a  ag uua 
gug  cucagaa cggg  uuugagggc ag ug  u   u
|||  ||||||| ||||  ||||||||| || ||  |   g
uac  ggguuuU GCCC  AAACUCCCG UC Ac  a   u
   ug       C    UG         G  A  cu uuu 

>ppy-mir-195 (-46.44)   [ppy-miR-195:15-35]

a   u     g  cU          -A          caggga 
 gcu cccug cu  AGCAGCACAG  AAUAUUGGCa      a
 ||| ||||| ||  ||||||||||  ||||||||||       
 ugg gggac ga  ucgucguguc  uuauaaccgu      g
g   u     g  cc          gg          cugagc 

>ppy-mir-196b (-34.30)   [ppy-miR-196b:15-36]

--     uc      uU       U  C           ucca 
  acugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
  |||||  ||||||  ||||||| || |||||||||||     
  ugacu  ucauua  uccguca ag acgacagcucu    c
gu     --      cu       c  c           cuuu 

>ppy-mir-199a-2 (-43.20)   [ppy-miR-199a-5p:31-53] [ppy-miR-199a-3p:70-91]

aggaa   u  ggaga    -    c   gcC       U        C   --UCa  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| |||     ||   
     cga ga     ggga cggg cag   GGUUACA GUCUGAUG ACA     cc  a
----a   -  -----    a    u   AUU       C        -   uguug  gu 

>ppy-mir-199b (-33.70)   [ppy-miR-199b-5p:31-49] [ppy-miR-199b-3p:66-87]

cca    -acacc    cu  -     -  uu     UU   C  U    U  ----  a 
   gagg      ucca  cc gucua cc  uGUGU  AGA UA CUGU Ca    gg c
   ||||      ||||  || ||||| ||  |||||  ||| || |||| ||    ||  
   cucc      gggu  gg cggAU GG  ACACG  UCU AU GACA gu    cc u
-gg    cagauu    cg  u     U  UU     --   U  -    u  uaaa  c 

>ppy-mir-200a (-44.70)   [ppy-miR-200a:54-75]

cc   - c   g        -            -----------     a 
  ggg c ccu ugagcauc uuaccggacagu           gcugg u
  ||| | ||| |||||||| ||||||||||||           ||||| u
  ccc g gga acuUGUAG AAUGGUCUGUCA           cgacc u
--   a u   a        C            CAAUcucaguu     c 

>ppy-mir-203 (-53.20)   [ppy-miR-203:65-86]

g     gg acuc  g         c         u    g    a     - ug 
 uguug  g    gc cgcuggguc agugguucu aaca uuca caguu c  u
 |||||  |    || ||||||||| ||||||||| |||| |||| ||||| |   
 gcgac  c    cg gcggcccaG UCACCAGGA UUGU AAGU Guuaa g  a
a     ag ggca  g         A         U    A    -     c cg 

>ppy-mir-205 (-49.02)   [ppy-miR-205:34-55]

aaagaucc    acaa       gcuu      UC           C        ucuca 
        ucag    uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        ||||    |||||||    ||||||  ||||||||||| ||||||||     a
        aguc    agguacg    gaggac  gaagugaggug cuuuagac     c
-------c    ---g       ----      uu           a        caacc 

>ppy-mir-208a (-31.10)   [ppy-miR-208a:44-65]

u   ag          g  c  gg      c  a 
 gac  gcgagcuuuu gc cg  uuauac ug u
 |||  |||||||||| || ||  |||||| || g
 cug  UGUUCGAAAA CG GC  AAUAug ac c
a   gu          A  A  AG      c  u 

>ppy-mir-208b (-31.30)   [ppy-miR-208b:46-67]

--c        g          c   aa        cu 
   cucucagg aagcuuuuug ucg  uuauguuu  g
   |||||||| |||||||||| |||  ||||||||  a
   gggagucU UUUGGAAAAC AGC  AAUAuaag  u
gac        G          A   AG        cc 

>ppy-mir-210 (-57.00)   [ppy-miR-210:75-96]

accc   ca  -  -    c         gc     c   c c   c      -  --cg  gc 
    ggg  gu cu ccuc aggcgcagg  cagcc cug c cac gcacac ug    cu  c
    |||  || || |||| |||||||||  ||||| ||| | ||| |||||| ||    ||  c
    ccc  cg ga ggag uccgugucu  GUCGG GAC G GUG CGUGUg ac    ga  c
----   ag  c  c    -         -A     C   A U   C      c  acca  ac 

>ppy-mir-216b (-32.60)   [ppy-miR-216b:11-32]

--g       gaA         A  --CAAA      g  ac 
   cagacug   AAUCUCUGC GG      UGUGAu uc  u
   |||||||   ||||||||| ||      |||||| ||   
   gucugac   uuagagaug cc      acacua ag  g
aca       auc         c  auucac      a  aa 

>ppy-mir-217 (-32.60)   [ppy-miR-217:35-57]

aguauaauuauuacaua    uu     c c  a  C     C          --   Auaa 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU  UGG    g
                 ||||  ||||| | || || ||||| ||||||||||  |||    a
                 caaa  cuacg c uc gu acgua uccuugacua  acc    a
--------------gaa    -u     a u  c  u     a          cc   gacu 

>ppy-mir-219-2 (-49.90)   [ppy-miR-219-5p:19-39]

a   a       c     U   U     AA           uac a  c 
 cuc ggggcuu gccac GAU GUCCA  CGCAAUUCUug   g gu u
 ||| ||||||| ||||| ||| |||||  |||||||||||   | || g
 ggg ccucgag cggug cua caggu  guguuaagagc   c cg c
-   -       u     u   -     cg           caa -  g 

>ppy-mir-220a (-39.40)   [ppy-miR-220a:23-44]

-ga   cgu  ca    -   - c   ACC        -   -      g    a    
   cag   gg  uugu agg g uCC   ACCGUGUC UGA CACUUU ggcg ggg 
   |||   ||  |||| ||| | |||   |||||||| ||| |||||| |||| || c
   guc   uc  ggca ucc c agg   uggcguag acu guggaa ucgu cca 
gua   -au  ua    c   u a   guc        u   u      g    a    

>ppy-mir-220b (-32.60)   [ppy-miR-220b:11-31]

u   -   - c   ACC        -   -      g  c a    
 ugu agg g uCC   ACCGUGUC UGA CACUUu gg g ggg 
 ||| ||| | |||   |||||||| ||| |||||| || | || c
 gcg ucc c agg   uggcguag acu guggaa uc c cca 
g   c   u a   guc        u   u      g  a a    

>ppy-mir-220c (-24.30)   [ppy-miR-220c:11-32]

--------------------------cacugggacuACACA     -    UGA 
                                         GGGCU GUUG   A
                                         ||||| ||||    
                                         cucga uaac   G
gacgggacucgguccgggacacgacuuccggcacaccccua     g    UCA 

>ppy-mir-222 (-54.10)   [ppy-miR-222:69-89]

gcu           uaggua  c   au              -     auc   ucuu 
   gcuggaaggug      cc uca  ggcucaguagccag uguag   cug    u
   |||||||||||      || |||  |||||||||||||| |||||   |||    c
   cgaucuucuac      gg agu  cUGGGUCAUCGGUC ACAUC   gac    g
--u           ------  u   cu              U     GAc   uaau 

>ppy-mir-296 (-45.50)   [ppy-miR-296-5p:14-34] [ppy-miR-296-3p:48-69]

  ga      c        C  C         G   ugc 
ag  cccuuc ggAGGGCC CC CUCAAUCCU Uug   c
||  |||||| |||||||| || ||||||||| |||   u
uc  gggaag CCUCUCGG GG GGGUUGGGA Gac   a
  uc      u        A  U         -   uua 

>ppy-mir-297 (-21.70)   [ppy-miR-297:4-24]

----------------u             C        G 
                 guAUGUAUGUGUG AUGUGCAU u
                 ||||||||||||| ||||||||  
                 uauauauauauac uacaugug a
acuauauacccaugcau             a        u 

>ppy-mir-298 (-32.10)   [ppy-miR-298:11-34]

---   gg    c      --      GC     UC -    g uu 
   uca  ucuu AGCAGA  AGCAGG  GGUUC  C CAgu g  u
   |||  |||| ||||||  ||||||  |||||  | |||| |  u
   agu  agga ucguuu  ucgucc  ucaag  g guca u  c
ucg   -g    c      cg      ga     ga u    g uc 

>ppy-mir-299 (-42.30)   [ppy-miR-299-5p:7-28] [ppy-miR-299-3p:39-60]

     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucUU GCCAAAUGGCAGGGUGUAUgua  a
     C                      ua 

>ppy-mir-300 (-23.80)   [ppy-miR-300:52-73]

--    a   ga      guaa     ---caug    u  uu 
  ugcu cuu  agagag    uccuu       cauu gc  u
  |||| |||  ||||||    |||||       |||| ||  a
  acga ggg  UCUCUC    GGGAA       guaa cg  c
aa    g   UC      AGAC     CAUAUua    -  uu 

>ppy-mir-301b (-33.00)   [ppy-miR-301b:45-67]

---g  g        c      ---g        a  gug u 
    cc caggugcu ugacga    guugcacu cu   c c
    || |||||||| ||||||    |||||||| ||   | u
    gg gucuaCGA ACUGUU    UAACGUGA ga   g g
acca  -        A      AUAG        C  --a a 

>ppy-mir-302b (-29.30)   [ppy-miR-302b:50-72]

     cuuca   uu          ug   ucugug     a 
gcucc     acu  aacauggaag  cuu      acuuu a
|||||     |||  ||||||||||  |||      |||||  
ugagG     UGA  UUGUACCUUC  GAA      Ugaag a
     ----A   UU          GU   ------     a 

>ppy-mir-302c (-32.00)   [ppy-miR-302c:43-65]

    ug  uu             c    -g  u 
ccuu  cu  aacauggggguac ugcu  ug g
||||  ||  ||||||||||||| ||||  || a
ggaG  GA  UUGUACCUUCGUG AUga  ac a
    GU  CU             A    aa  a 

>ppy-mir-302d (-25.40)   [ppy-miR-302d:44-66]

  u u    u        u       ---c   ga 
cc c acuu aacaugga gcacuug    ugu  c
|| | |||| |||||||| |||||||    |||   
gg G UGAG UUGUACCU CGUGAAU    aca  a
  U -    U        U       aaaa   gu 

>ppy-mir-302e (-10.20)   [ppy-miR-302e:6-22]

-----------uug    -- G   U     G   - -a  uu 
              guUA  A UAC UCCAU CUU c  gu  c
              ||||  | ||| ||||| ||| |  ||   
              cgau  u aug aggua gaa g  ca  c
agauauuccaucca    aa g   u     -   u gc  uu 

>ppy-mir-320a (-46.40)   [ppy-miR-320a:48-69]

      c   -ccuc         uu       c      g 
gcuucg ucc     cgccuucuc  cccgguu uucccg a
|||||| |||     |||||||||  ||||||| ||||||  
uggagu agg     GCGGGAGAG  GGGUCGA AAgggc g
      -   aaaaA         UU       A      u 

>ppy-mir-320b-1 (-12.20)   [ppy-miR-320b:39-60]

---------------------------------aauuaauc   cucu      uu 
                                         ccu    uucuag  c
                                         |||    ||||||   
                                         gga    gagauc  u
uuaauuaaucaauuaaacaAACGGGAGAGUUGGGUCGAAAA   --au      cu 

>ppy-mir-320b-2 (-38.20)   [ppy-miR-320b:72-93]

--uguuauuuuuugucuucuaccua        ------g  u   ag        uu         c -  a 
                         agaauucu       uc cuu  gcuuucuc  cucaguuuu c ca a
                         ||||||||       || |||  ||||||||  ||||||||| | ||  
                         ucuuaaga       ag gaa  CGGGAGAG  GGGUCGAAA g gu g
aagggauagauuaacacagucucug        aaaaaaa  -   AA        UU         A a  u 

>ppy-mir-320c-1 (-28.27)   [ppy-miR-320c:50-69]

uu       --aaaaugag        uu    -   c    cag 
  ugcauua          gccuucuc  ccca cuu uucc   a
  |||||||          ||||||||  |||| ||| ||||    
  auguagu          UGGGAGAG  GGGU GAA AAgg   g
--       aaaaaaaaga        UU    C   -    acu 

>ppy-mir-320c-2 (-24.60)   [ppy-miR-320c:31-50]

--      uu       c     ag 
  cuucuc  uccaguu uuucc  a
  ||||||  ||||||| |||||   
  GGAGAG  GGGUCGA AAggg  a
UG      UU       A     uu 

>ppy-mir-320d-1 (-19.20)   [ppy-miR-320d:30-48]

--     uu       c   c  a 
  uucuc  cccaguu uuc ca a
  |||||  ||||||| ||| ||  
  GAGAG  GGGUCGA AAg gu g
AG     UU       A   a  u 

>ppy-mir-320d-2 (-23.10)   [ppy-miR-320d:30-48]

--     uu       c      g 
  uucuc  cccaguu uucuug a
  |||||  ||||||| ||||||  
  GAGAG  GGGUCGA AAggac g
AG     UU       A      u 

>ppy-mir-323 (-37.70)   [ppy-miR-323-5p:16-37] [ppy-miR-323-3p:51-71]

---uu      u g        G U     GCGC  U    uua 
     gguacu g agagAGGU G CCGUG    GU CGCu   u
     |||||| | |||||||| | |||||    || ||||    
     cuauga c uuUCUCCA C GGCAC    CA gcgg   u
cuaau      - g        G U     AUUA  C    uau 

>ppy-mir-324 (-38.60)   [ppy-miR-324-5p:16-38] [ppy-miR-324-3p:53-72]

cu      gc     C   U C   A     U   U  aaag 
  gacuau  cuccc GCA C CCU GGGCA UGG GU    c
  ||||||  ||||| ||| | ||| ||||| ||| ||     
  cugaug  gggGG CGU G GGA CCCGU Acc ca    u
--      uu     U   C U   C     C   -  gagg 

>ppy-mir-325 (-36.80)   [ppy-miR-325:16-38]

----------a              CC   U    G C         Uu gug 
           uacagugcuugguu  UAG AGGU U CAGUAAGUG  u   a
           ||||||||||||||  ||| |||| | |||||||||  |    
           gugucacgaacuaa  auc ucca g guuauucgu  a   c
ggucucggauc              cu   c    g a         uu aug 

>ppy-mir-326 (-55.80)   [ppy-miR-326:60-79]

cuc        guu          c       uugu  a     -g  g 
   aucugucu   gggcuggagg agggccu    ga ggcgg  ug u
   ||||||||   |||||||||| |||||||    || |||||  || g
   uaggcgga   cccGACCUCC UCCCGGG    CU CCgcu  ac c
acu        -gc          U       ---U  -     ag  u 

>ppy-mir-328 (-44.10)   [ppy-miR-328:48-69]

--u  ag           -    a  u     a aaa  g 
   gg  ugggggggcag gagg gc caggg g   gu c
   ||  ||||||||||| |||| || ||||| |   ||  
   cc  GCCUUCCCGUC CUCC CG GUCcc c   cg a
guc  cU           U    -  -     - -ga  u 

>ppy-mir-329-1 (-32.60)   [ppy-miR-329:50-71]

     cu           uu ug   uuc      u  aa 
gguac  gaagagagguu  c  ggu   uguuuc uu  u
|||||  |||||||||||  |  |||   |||||| ||   
cuaug  cuUUUCUCCAA  G  CCA   ACAAag ag  g
     ac           UU GU   --C      u  ga 

>ppy-mir-329-2 (-34.40)   [ppy-miR-329:52-73]

g      cu           uu ug   uuc      u  au 
 ugguac  gaagagagguu  c  ggu   uguuuc uu  u
 ||||||  |||||||||||  |  |||   |||||| ||   
 acuaug  cuUUUCUCCAA  G  CCA   ACAAag ag  g
-      ac           UU GU   --C      u  ga 

>ppy-mir-330 (-46.52)   [ppy-miR-330-5p:18-39] [ppy-miR-330-3p:57-79]

cuuu   -  u a           --    -    U   AG    ugcaa 
    ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ccg cu g gacggAGAGAC  CCGG ACAC GAA  CGag     u
---c   u  c c           GU    C    -   -A    ccaac 

>ppy-mir-331 (-30.92)   [ppy-miR-331-5p:26-47] [ppy-miR-331-3p:61-78]

gaguuugguuuugu       u   C    U    U       AU Ccaga 
              uuggguu guu UAGG AUGG CCCAGGG  C     u
              ||||||| ||| |||| |||| |||||||  |     c
              aauccaa caa AUCC UAUC GGGUCCC  g     a
--------------       -   -    -    C       CG accaa 

>ppy-mir-335 (-40.40)   [ppy-miR-335:14-36]

----------uuu    c        A         C        U  gu 
             ugag gggggUCA GAGCAAUAA GAAAAAUG uu  c
             |||| |||||||| ||||||||| |||||||| ||   
             acuc ccuccagu cucguuauu cuuuuugc aa  a
acuuauaucguuu    u        c         a        c  au 

>ppy-mir-337 (-40.30)   [ppy-miR-337-5p:23-43] [ppy-miR-337-3p:61-82]

guagucagua uu         -   C   U     C        -   ca 
          g  ggggggugg GAA GGC UCAUA AGGAGUUg aug  c
          |  ||||||||| ||| ||| ||||| |||||||| |||   
          c  uccccuaCU CUU CCG AGUAU UCCUCgac uau  a
--------aa -u         U   U   U     A        c   ug 

>ppy-mir-338 (-26.92)   [ppy-miR-338-5p:6-27] [ppy-miR-338-3p:42-63]

   c      U   -         -   Gauga 
ucu cAACAA AUC CUGGUGCUG AGU     c
||| |||||| ||| ||||||||| |||     u
aga GUUGUU UAG GACUACGAC Uca     c
   a      U   U         C   acgga 

>ppy-mir-339 (-52.90)   [ppy-miR-339-5p:15-37]

----------c       c    cU -      C  -C   A       u  g 
           ggggcgg cgcu  C CCUGUC UC  AGG GCUCACG gu c
           ||||||| ||||  | |||||| ||  ||| ||||||| ||  
           ccccgcc gcgg  g ggacag ag  ucc cgagugu cg c
cgcgucuguga       c    cc a      c  cu   g       c  u 

>ppy-mir-340 (-33.40)   [ppy-miR-340:16-37]

--uu     u      aU       -CAA      U    g     ug 
    guauc ggugug  UAUAAAG    UGAGAC GAUU ucaua  u
    ||||| ||||||  |||||||    |||||| |||| |||||  c
    uaugg ccauac  auauuuc    acucug cuag ggugu  g
auuc     u      cg       auug      c    -     uu 

>ppy-mir-342 (-47.70)   [ppy-miR-342-5p:19-39] [ppy-miR-342-3p:61-83]

gaaac     u        G      --UA      AUUGA      ugg  a 
     ugggc caaggugA GGGUGC    UCUGUG     gggaca   uu a
     ||||| |||||||| ||||||    ||||||     ||||||   ||  
     auccg guuccacU CCCACG    AGACAC     CUCUgu   ag u
-auuc     -        G      CUAA      ----A      -ua  g 

>ppy-mir-345 (-51.30)   [ppy-miR-345:18-39]

---------acc       u      G U       A  C         ug u 
            caaaccc aggucu C GACUCCU GU CAGGGCUCg  a g
            ||||||| |||||| | ||||||| || |||||||||  |  
            guuuggg uccgga g cugggga ca gucccgggu  u g
cgaccgcuauaa       -      g u       g  a         gg c 

>ppy-mir-346 (-50.20)   [ppy-miR-346:20-42]

-g u      g ug    u    CU    -  AUG        U  guug 
  g cucugu u  ggcg cUGU  GCCC GC   CCUGCCUC cu    c
  | |||||| |  |||| ||||  |||| ||   |||||||| ||     
  c gagacg g  ccgu gacg  cggg cg   ggacggag ga    u
gg -      - gu    c    uc    u  --g        -  aguc 

>ppy-mir-361 (-32.30)   [ppy-miR-361-5p:6-27] [ppy-miR-361-3p:45-67]

     UU         --U  A    U     auaa 
ggagc  AUCAGAAUC   CC GGGG ACuuu    u
|||||  |||||||||   || |||| |||||     
cuucg  UAGUCUUAG   GG CCCC Ugaaa    u
     UU         UGU  A    C     aacu 

>ppy-mir-362 (-30.00)   [ppy-miR-362-5p:2-25] [ppy-miR-362-3p:39-60]

---           ACC        -A Ug  a 
   gAAUCCUUGGA   UAGGUGUG  G  cu u
   |||||||||||   ||||||||  |  || u
   CUUAGGAACUU   AUCCACAC  c  ga u
aaA           ---        AA gu  c 

>ppy-mir-363 (-25.00)   [ppy-miR-363:50-71]

u   gu         ca  a         --ga   gu 
 guu  cggguggau  cg ugcaauuuu    uua  a
 |||  |||||||||  || |||||||||    |||   
 caa  GUCUACCUA  GC ACGUUAAaa    gau  u
c   AU         UG  -         agag   ac 

>ppy-mir-365-1 (-35.40)   [ppy-miR-365:56-77]

acc      aa        ac           ----   -   uuu 
   gcaggg  aaugaggg  uuuugggggca    gau gug   c
   ||||||  ||||||||  |||||||||||    ||| |||   c
   cguucu  uUAUUCCU  AAAAUCCCCGU    cua cac   a
--a      cg        -A           AAUa   u   cuu 

>ppy-mir-365-2 (-40.10)   [ppy-miR-365:68-89]

agaguguucaa g   --       a        ac   c       -----    u   u 
           g aca  gcaagaa aaugaggg  uuu aggggca     gcug guu u
           | |||  ||||||| ||||||||  ||| |||||||     |||| |||  
           c ugu  cguucuu uUAUUCCU  AAA UCCCCGU     ugac cag c
-----gggcua g   ga       g        AA   -       AAUac    u   u 

>ppy-mir-367 (-29.00)   [ppy-miR-367:44-65]

                ua     c    -      
ccauuacuguugcuaa  ugcaa ucug uuuaa 
||||||||||||||||  ||||| |||| |||| u
gguAGUGGUAACGAUU  ACGUU Aggu aaaua 
                UC     A    u      

>ppy-mir-369 (-29.30)   [ppy-miR-369-5p:9-30] [ppy-miR-369-3p:44-64]

u   ag               UA      Cuuua 
 uga  ggAGAUCGACCGUGU  UAUUCG     u
 |||  |||||||||||||||  ||||||      
 acu  UUUCUAGUUGGUACA  AUAAgc     u
g   cu               UA      uucag 

>ppy-mir-370 (-32.60)   [ppy-miR-370:48-69]

      agaa       ca gu   u    u   a ag 
agacag    gccaggu  c  cuc gcag uac c  c
||||||    |||||||  |  ||| |||| ||| |  u
ucuguc    UGGUCCA  G  GGG CGUC Gug g  c
      ----       AG UG   U    C   a ca 

>ppy-mir-371 (-39.10)   [ppy-miR-371-5p:6-25] [ppy-miR-371-3p:42-64]

            CU    G         u   c 
guggcACUCAAA  GUGG GGCACUuuc gcu u
||||||||||||  |||| ||||||||| |||  
cauUGUGAGUUU  UACC CCGUGAAag ugg c
            UC    G         -   u 

>ppy-mir-372 (-27.10)   [ppy-miR-372:42-64]

gug   -         g -      a    gaug 
   ggc cucaaaugu g agcacu uucu    u
   ||| ||||||||| | |||||| ||||    c
   cUG GAGUUUACA C UCGUGA AAgg    c
-ca   C         G G      -    ugaa 

>ppy-mir-373 (-35.94)   [ppy-miR-373:44-66]

         -     g            uuuuuc 
gggauacuc aaaau ggggcgcuuucc      u
||||||||| ||||| ||||||||||||       
cccUGUGGG UUUUA CUUCGUGAAGgg      c
         G     G            ucaugu 

>ppy-mir-374a (-35.20)   [ppy-miR-374a:12-33]

     c   c            C           u 
uacau ggc aUUAUAAUACAA CUGAUAAGUGu g
||||| ||| |||||||||||| |||||||||||  
augug cug uaauguuauguu gacuauucacg u
     u   u            a           a 

>ppy-mir-375 (-26.20)   [ppy-miR-375:40-61]

c  -    a      ccu  c     c  gac 
 cc cgcg cgagcc   cg acaaa cg   c
 || |||| ||||||   || ||||| ||    
 gg GUGC GCUCGG   GC UGUUU gc   u
c  A    -      CUU  U     u  gag 

>ppy-mir-376a-1 (-18.20)   [ppy-miR-376a:44-64]

u    g  a    c    u      --gua   u 
 aaaa gu gauu uccu cuauga     cau a
 |||| || |||| |||| ||||||     ||| u
 uuuU CA CUAA AGGA GAUACU     gua u
c    G  C    A    -      Aauua   u 

>ppy-mir-376a-2 (-28.20)   [ppy-miR-376a:50-70]

      u    g  a         u         --   g 
gguauu aaaa gu gauuuuccu cuaugguua  cgu u
|||||| |||| || ||||||||| |||||||||  ||| u
cuauga uuuU CA CUAAAAGGA GAUACUAau  gua u
      c    G  C         -         ug   g 

>ppy-mir-376b (-33.20)   [ppy-miR-376b:62-83]

    ccuuc         u           a     u     u   - guga 
cagu     uuugguauu aaaacguggau uuccu cuaug uua c    u
||||     ||||||||| ||||||||||| ||||| ||||| ||| |     
gucg     aaacuauga uuUUGUACCUA AAGGA GAUAC Aau g    u
    ----u         c           A     -     U   a gucc 

>ppy-mir-376c (-24.02)   [ppy-miR-376c:43-63]

    g     ua     u         uguua 
aaaa gugga  uuccu cuauguuua     u
|||| |||||  ||||| |||||||||     u
uuuU CACCU  AAGGA GAUACAAau     u
    G     UA     -         uggua 

>ppy-mir-377 (-27.80)   [ppy-miR-377:45-66]

uu              c   -    a    - uuu 
  gagcagagguugcc uug guga uucg c   a
  |||||||||||||| ||| |||| |||| |   u
  uuUGUUUUCAACGG AAC CACU Aagu g   u
-g              A   A    -    u uau 

>ppy-mir-378 (-27.30)   [ppy-miR-378:43-63]

ag g  c    c         ugu      ccu 
  g cu cuga uccaggucc   guguua   a
  | || |||| |||||||||   ||||||    
  C GA GACU AGGUUCAGG   CAcgau   g
-- G  A    -         --U      aaa 

>ppy-mir-379 (-27.40)   [ppy-miR-379:6-26]

    a    A       GA       -  uu u 
agag UGGU GACUAUG  ACGUAGG cg  a g
|||| |||| |||||||  ||||||| ||  |  
ucuc auca cugguac  uguaucc gu  u a
    a    c       aa       a  uu u 

>ppy-mir-380 (-20.90)   [ppy-miR-380:40-60]

aagau   u       ga       c   c 
     ggu gaccaua  acaugcg uau u
     ||| |||||||  ||||||| |||  
     UCA CUGGUAU  UGUAUgc gug c
--UUC   C       AA       u   u 

>ppy-mir-381 (-35.00)   [ppy-miR-381:49-70]

      a  c   g        u        --g   u 
uacuua ag gag uugcccuu guauauuc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   cag u
      G  U   G        -        gua   u 

>ppy-mir-382 (-24.94)   [ppy-miR-382:11-32]

    u       -A           UG     Ccuuua 
uacu gaagaGA  GUUGUUCGUGG  GAUUC      c
|||| |||||||  |||||||||||  |||||       
auga cuuuuuu  caacaggcacu  cuaag      u
    -       ca           ua     caguau 

>ppy-mir-383 (-27.30)   [ppy-miR-383:7-28]

   -c  A      AA    A        uug   gga 
cuc  uc GAUCAG  GGUG UUGUGGCU   ggu   u
|||  || ||||||  |||| ||||||||   |||    
gag  ag cugguc  ucac gacaccga   cua   a
   aa  a      cg    -        ---   auu 

>ppy-mir-384 (-14.66)   [ppy-miR-384:57-76]

-------------------------------------------------uguuaaa  -        u 
                                                        uc aggaauug a
                                                        || ||||||||  
                                                        ag uccuuaac a
acaauguccguaAUACUUUUUAAAGAUCCUUAcugaauacuuguaauauguauaac  a        a 

>ppy-mir-409 (-38.30)   [ppy-miR-409-5p:15-37] [ppy-miR-409-3p:47-68]

u     u  gg   A    AC         -    - AUc 
 gguac cg  gag GGUU  CCGAGCAAC UUUG C   u
 ||||| ||  ||| ||||  ||||||||| |||| |    
 cuaug gc  uUC CCAA  GGCUCGUUG AAGc g   g
a     -  uu   C    GU         U    a cag 

>ppy-mir-410 (-36.70)   [ppy-miR-410:50-70]

     c      g    ug      a  a     - uuuu 
gguac ugagaa aggu  ucugug ug guucg c    a
||||| |||||| ||||  |||||| || ||||| |     
ccaug acuuuU UCCG  AGACAC AU UAAgc g    u
     -      G    GU      A  A     a uaau 

>ppy-mir-411 (-30.70)   [ppy-miR-411:16-36]

--------------       ug   a a    A      A A       - uuu 
              ugguacu  gag g UAGU GACCGU U GCGUACG c   a
              |||||||  ||| | |||| |||||| | ||||||| |   u
              acuauga  cuc c auca cuggca a uguaugc g   c
gagccccuaccuaa       --   c a    c      c a       a ugu 

>ppy-mir-412 (-34.70)   [ppy-miR-412:54-76]

----cug      gg      a    c      u   aa    -    u 
       ggguac  ggaugg uggu gaccag ugg  agua auug u
       ||||||  |||||| |||| |||||| |||  |||| ||||  
       ccuaug  ccUGCC AUCA CUGGUC ACU  UCAu uaau u
gacgucg      --      G    C      C   --    g    c 

>ppy-mir-421 (-30.70)   [ppy-miR-421:48-70]

----g   -uu     g    -auua            a   aaa 
     cac   guagg cguc     aauguuuguuga uga   a
     |||   ||||| ||||     |||||||||||| |||   a
     gug   cgucC GCGG     UUACAGACAACU Acu   u
cucua   ucu     -    GUUAA            -   aag 

>ppy-mir-422a (-37.10)   [ppy-miR-422a:10-31]

-----   --a     AC   A  G    U    AG     ag   cu 
     gag   gaagc  UGG CU AGGG CAGA  GCcug  ugu  c
     |||   |||||  ||| || |||| ||||  |||||  |||  u
     cuc   uuucg  acc ga uccc gucu  cgggu  acg  g
ggucc   cug     -a   -  g    u    cu     ag   uc 

>ppy-mir-423 (-48.50)   [ppy-miR-423-5p:13-35] [ppy-miR-423-3p:49-71]

---------       u            -AG   G    A     cua 
         aggaagu aggcUGAGGGGC   AGA CGAG CUUUu   u
         ||||||| ||||||||||||   ||| |||| |||||   u
         uccuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
cgcgcccca       u            GAG   G    -     ccu 

>ppy-mir-424 (-42.30)   [ppy-miR-424:11-32]

---------------------       a  C      AA             g   u 
                     cgagggg ua AGCAGC  UUCAUGUUUUGAA ugu c
                     ||||||| || ||||||  ||||||||||||| ||| u
                     gcucccc au ucgucg  gagugcaaaacuu gua a
gggguggaagauggaaggggu       c  a      cg             g   a 

>ppy-mir-425 (-35.70)   [ppy-miR-425:14-36]

     c  u    AAU       U  C     U  A  -----  g 
gaaag gc uugg   GACACGA CA UCCCG UG gu     gg c
||||| || ||||   ||||||| || ||||| || ||     ||  
cuuuc cg gacc   cugugcu gu agggc ac cg     cc a
     u  u    cgc       -  a     u  -  aagag  c 

>ppy-mir-429 (-36.10)   [ppy-miR-429:51-72]

cgccg  c        -uc          ug       cugg 
     gc gaugggcg   uuaccagaca  guuagac    c
     || ||||||||   ||||||||||  |||||||     
     cg cuaccUGC   AAUGGUCUGU  UAAUcug    c
-----  c        CAA          CA       ucug 

>ppy-mir-431 (-43.60)   [ppy-miR-431:20-40]

---------------ucc  c     c       U          C  U A     ----   aca 
                  ug uuguc ugcgagg GUCUUGCAGG CG C UGCAg    gcc   c
                  || ||||| ||||||| |||||||||| || | |||||    |||    
                  ac agcag acgcucu cgggacguuc gc g acguu    ugg   u
gcagcaaccacuacuccu  -     a       u          u  u g     gcaa   cag 

>ppy-mir-432 (-42.10)   [ppy-miR-432:14-36]

u  -  c       U U     UA       G     a   u -  uu 
 ga cu cuccagg C UGGAG  GGUCAUU GGUGG ucc c ua  u
 || || ||||||| | |||||  ||||||| ||||| ||| | ||   
 cu ga gagguuc g accuc  ucgguag ucacc ggg g au  c
a  a  u       u u     -c       g     -   u c  uc 

>ppy-mir-433 (-38.20)   [ppy-miR-433:64-85]

  gg      gua   u           u   --------  g     cu 
cc  ggagaa   cgg gagccugucau auu        ca agagg  a
||  ||||||   ||| ||||||||||| |||        || |||||   
gg  ccucuU   GCU CUCGGGUAGUA UAg        gu ucucc  g
  -a      GUG   C           C   gaagaguu  g     ua 

>ppy-mir-448 (-51.60)   [ppy-miR-448:71-92]

-----------  c       u a            g   u     ga au    auu  au 
           gc gggaggu g acauccugcaua ugc gccag  a  cccu   uc  a
           || ||||||| | |||||||||||| ||| |||||  |  ||||   ||   
           cg cccucUA C UGUAGGAUGUAU ACG Ugguc  u  gggg   ag  u
acugcuucacc  a       C C            -   U     gg cg    ---  aa 

>ppy-mir-449a (-38.60)   [ppy-miR-449a:16-37]

-c      ug     c       -    U          ugaa   g 
  ugugug  augag UGGCAGU GUAU GUUAGCUGGU    uau u
  ||||||  ||||| ||||||| |||| ||||||||||    |||  
  auauac  uauuc gucguca cgug caaucggcua    gua g
ac      gu     u       a    -          --cg   a 

>ppy-mir-449b (-34.40)   [ppy-miR-449b:16-37]

---------uga  u   u     A     U   UU   A C        uugg 
            cc gaa caggu GGCAG GUA  GUU G UGGCugcu    u
            || ||| ||||| ||||| |||  ||| | ||||||||    c
            gg cuu guuca ccguc cau  caa c accgacga    a
ucuucuuaaaua  u   c     -     c   --   - -        cuga 

>ppy-mir-450a-1 (-39.60)   [ppy-miR-450a:18-38]

--aaac             UUU     U              cac 
      gauacuaaacugu   UGCGA GUGUUCCUAAUAug   a
      |||||||||||||   ||||| ||||||||||||||   a
      cuaugguuugaua   acguu uacaaggguuauau   u
auauaa             ugu     u              aaa 

>ppy-mir-450a-2 (-37.90)   [ppy-miR-450a:23-43]

-ccaaagaaa     u       UUU     U               aa 
          gaugc aaacuau   UGCGA GUGUUCCUAAUAcgu  u
          ||||| |||||||   ||||| |||||||||||||||  a
          cuaug uuugaua   acguu uacagggguuaugua  u
gguauaguaa     u       cuu     u               aa 

>ppy-mir-450b (-23.50)   [ppy-miR-450b-5p:11-32] [ppy-miR-450b-3p:48-69]

--          UUU     U   U    G    ug aa 
  gcagaauuau   UGCAA AUG UCCU AAUA  u  u
  ||||||||||   ||||| ||| |||| ||||  |  a
  uguuuugAUA   ACGUU UAC AGGG UUau  g  u
ua          CCU     U   U    -    gu aa 

>ppy-mir-451 (-44.70)   [ppy-miR-451:17-38]

c     a        gA                 A 
 uuggg auggcaag  AACCGUUACCAUUACUG G
 ||||| ||||||||  |||||||||||||||||  
 gaccc uaucguuc  uugguaaugguaaugau U
a     a        uc                 U 

>ppy-mir-452 (-40.90)   [ppy-miR-452:14-35]

  u          AAC G        G  A        uuug 
gc aagcacuuac   U UUUGCAGA GA ACUGAgac    u
|| ||||||||||   | |||||||| || ||||||||    a
cg uucgugaaug   a aaacgucu cu ugacucug    a
  u          --a g        a  c        uauc 

>ppy-mir-453 (-25.90)   [ppy-miR-453:44-66]

   ----g     c       agugccaccucaugguacuc 
gca     gaaug ugcgagc                    g
|||     ||||| |||||||                     
cgu     uuuau ACGCUUG                    g
   aguaa     u       AGUGGUGCCUGUUGGAggga 

>ppy-mir-455 (-41.60)   [ppy-miR-455-5p:16-37] [ppy-miR-455-3p:54-74]

----ucccu   -g     -----          U      A   C   gaa 
         ggc  ugagg     gUAUGUGCCU UGGACU CAU Gug   g
         |||  |||||     |||||||||| |||||| ||| |||    
         ccg  acucc     CAUAUACGGG ACCUGA Gua cac   c
cuacuguau   ga     guuCA          U      C   c   gac 

>ppy-mir-484 (-33.80)   [ppy-miR-484:8-29]

a   ----uc      CUCA   C       AU   -c    a 
 gcc      gUCAGG    GUC CCUCCCG  aaa  cccu a
 |||      ||||||    ||| |||||||  |||  ||||  
 cgg      cggucc    cag ggggggc  uuu  ggga a
g   uuuuuu      ----   u       cc   ca    u 

>ppy-mir-485 (-34.40)   [ppy-miR-485-5p:9-30] [ppy-miR-485-3p:46-67]

   ug        CU       -    A    auuc 
acu  gagAGAGG  GGCCGUG AUGA UUCg    a
|||  ||||||||  ||||||| |||| ||||    u
uga  uUCUCUCC  UCGGCAC UACU Gagc    c
   uu        UC       A    -    gaaa 

>ppy-mir-486 (-48.50)   [ppy-miR-486-5p:4-25]

gc                      ----   ccuu 
  aUCCUGUACUGAGCUGCCCCGA    Ggc    c
  ||||||||||||||||||||||    |||     
  uaggacaugacucgacggggcu    ccg    a
ca                      cgac   ucgu 

>ppy-mir-487a (-30.30)   [ppy-miR-487a:49-70]

      u     g   uua      c    -    c   a 
gguacu gaaga ugg   ucccug ugug uucg uua u
|||||| ||||| |||   |||||| |||| |||| ||| u
cuauga uuuUU ACC   AGGGAC AUAC AAgc agu u
      c     G   UAC      -    U    -   a 

>ppy-mir-487b (-34.80)   [ppy-miR-487b:51-72]

u       ug        uuau      c u     uuuug 
 ugguacu  gagagugg    cccugu c guucg     c
 |||||||  ||||||||    |||||| | |||||      
 acuauga  uuUUCACC    GGGACA G UAAgc     u
a       cu        UACU      U C     uguac 

>ppy-mir-488 (-33.00)   [ppy-miR-488:52-72]

    a      cu  c   u      a  c        g u 
gaga ucaucu  cc aga aauggc cu ucaaacaa u u
|||| ||||||  || ||| |||||| || |||||||| | c
cucu aguaga  GG UCU UUAUCG GA AGUUuguu a c
    c      CU  U   -      -  A        g a 

>ppy-mir-489 (-37.70)   [ppy-miR-489:52-73]

       c     g            gc c    ua     a 
guggcag uuggu gucguaugugug  g cauu  cuuga c
||||||| ||||| ||||||||||||  | ||||  |||||  
caucguc aauCG CGGCAUAUACAC  C GUGa  ggauu c
       a     A            UA A    --     u 

>ppy-mir-490 (-54.10)   [ppy-miR-490-5p:39-58] [ppy-miR-490-3p:76-97]

u     -cc      g    -   aguucauu        C      --         G   caa   u 
 ggagg   uugcug uuug gaa        guucgaca CAUGGA  UCUCCAGGU GGU   guu a
 |||||   |||||| |||| |||        |||||||| ||||||  ||||||||| |||   |||  
 ccuuc   ggcgac gagc cuu        cgaguuGU GUACCU  GGAGGUCCA Cca   uag g
a     aca      -    a   ------gu        C      CA         A   -cg   a 

>ppy-mir-491 (-49.40)   [ppy-miR-491-5p:16-37] [ppy-miR-491-3p:50-71]

 ug       ug     U      CC   C          a 
u  acuuagc  gguAG GGGGAA  CUU CAUGAGGagu g
|  |||||||  ||||| ||||||  ||| |||||||||| a
g  ugggucg  cCAUC UCCCUU  GAA GUAUUCcuca a
 gu       gu     U      -A   C          c 

>ppy-mir-492 (-37.00)   [ppy-miR-492:34-56]

caacuacgagccacgguacuacgaggacca   AG  CC          -----  -    Ug   c 
                              uug  GA  UGCGGGACAA     GA UUCU  gug c
                              |||  ||  ||||||||||     || ||||  |||  
                              aac  cu  acguccuguu     cu aaga  uac a
---------guagacgucggucuacucguu   aa  ac          aggac  c    gu   c 

>ppy-mir-493 (-47.70)   [ppy-miR-493:57-78]

     cuc        u                    cauuc  u 
cuggc   cagggcuu guacaugguaggcuuucauu     gu u
|||||   |||||||| ||||||||||||||||||||     ||  
gaccg   gucccGGA CGUGUGUCAUCUGGAAGUgg     ca g
     --u        C                    -cuua  c 

>ppy-mir-494 (-34.10)   [ppy-miR-494:48-69]

      c            gu      -   c   -  uuu 
gauacu gaaggagagguu  ccgugu ugu uuc uc   a
|||||| ||||||||||||  |||||| ||| ||| ||   u
cuauga uuuuuuCUCCAA  GGCACA ACA AAG ag   u
      -            AG      U   -   U  uau 

>ppy-mir-495 (-31.10)   [ppy-miR-495:47-68]

---    u          u  -       au     - uuu 
   uacc gaaaagaagu gc ccauguu  uuucg c   a
   |||| |||||||||| || |||||||  ||||| |   u
   augg uuuUUCUUCA CG GGUACAA  AAAgc g   a
acu    c          -  U       AC     a ugu 

>ppy-mir-496 (-41.00)   [ppy-miR-496:56-77]

      -----uca     u    u        u     gu         uua 
cccaag        gguac cgaa ggagguug ccaug  guguucauu   u
||||||        ||||| |||| |||||||| |||||  |||||||||    
ggguuc        ucaug guuu cCUCUAAC GGUAC  UAUGAGUag   u
      uucuuaac     -    u        C     AU         uau 

>ppy-mir-497 (-56.30)   [ppy-miR-497:24-44]

  a cc    -   g         - -----    G    C         Ug --   au 
cc c  cggu ccu cucccgccc C     AGCA CACA UGUGGUUUG  c  ggc  u
|| |  |||| ||| ||||||||| |     |||| |||| |||||||||  |  |||   
gg g  gcca gga ggggguggg g     uugu gugu acaccaaac  g  ccg  g
  a cc    c   -         a cgaga    g    c         cu ca   gu 

>ppy-mir-498 (-55.90)   [ppy-miR-498:34-56]

--aacccuccuugggaa  gaag            -         -A     C       ugua 
                 gu    cucaggcuguga UUUCAAGCC  GGGGG GUUUUUC    a
                 ||    |||||||||||| |||||||||  ||||| |||||||    c
                 cg    gaguuugacacu gaaguucgg  ccucc cgaaaag    u
uugaagcaaucugcuaa  ---a            c         ga     a       uagg 

>ppy-mir-499 (-62.62)   [ppy-miR-499-5p:33-53] [ppy-miR-499-3p:70-91]

         ccu  -  cuu   -    c   c  UA        A          acucc 
gcccugucc   gu gc   ggg cggg ggc gU  AGACUUGC GUGAUGUUUa     u
|||||||||   || ||   ||| |||| ||| ||  |||||||| ||||||||||     c
ugggacggg   cg cg   ccc gccc ucg CG  UCUGAACG CACUACAAgu     u
         -uu  u  cau   u    u   U  UG        A          gcacc 

>ppy-mir-500 (-38.70)   [ppy-miR-500:13-35]

    c c     -U         UAC UG    AGAg   ugu 
gcuc c cucuc  AAUCCUUGC   C  GGUG    ugc   c
|||| | |||||  |||||||||   |  ||||    |||   u
cgag g gagag  uuaggaacg   g  ccac    acg   g
    a c     uc         --- gu    -gua   uaa 

>ppy-mir-501 (-41.30)   [ppy-miR-501-3p:45-66]

------       -         uau ug     uag   ugu 
      ccucucu aauccuugc   c  ggugc   ugc   c
      ||||||| |||||||||   |  |||||   |||   u
      ggagagA UUAGGAACG   G  CCACG   Acg   c
cgaggg       C         --- GU     -UA   uaa 

>ppy-mir-502 (-59.00)   [ppy-miR-502-5p:16-36] [ppy-miR-502-3p:52-73]

u             -         UAU UG     UAg   ugu 
 gcucccccucucu aAUCCUUGC   C  GGUGC   ugc   c
 ||||||||||||| |||||||||   |  |||||   |||   u
 cgagggggagagA UUAGGAACG   G  CCACG   Acg   c
u             C         --- GU     -UA   uaa 

>ppy-mir-503 (-42.10)   [ppy-miR-503:6-28]

      A              U  G  Gu     a 
ugcccU GCAGCGGGAACAGU CU CA  gagcg u
|||||| |||||||||||||| || ||  ||||| u
auggga cgucgccuuuguua ga gu  cucgu g
      c              u  g  --     g 

>ppy-mir-504 (-52.30)   [ppy-miR-504:13-34]

   -g    -            G          -A  u   u 
gcu  cugu ugggAGACCCUG UCUGCACUCU  UC gua u
|||  |||| |||||||||||| ||||||||||  || |||  
cgg  gaca acccuuugggac ggacgugagg  ag cau c
   ga    u            g          ga  u   u 

>ppy-mir-505 (-42.40)   [ppy-miR-505:51-72]

g    ac    u           g    a        ucug 
 augc  ccag gggggagccag aagu uugauguu    c
 ||||  |||| ||||||||||| |||| ||||||||    c
 uacg  gguc cUCCUUUGGUC UUCA AACUGCga    a
-    -a    u           G    C        uuug 

>ppy-mir-506 (-45.25)   [ppy-miR-506:71-91]

        caucagcuacg      -   --g   c          a     ua    a     u 
gccaccac           cuaugu gua   ugc uuauucagga ggugu  cuua uagau a
||||||||           |||||| |||   ||| |||||||||| |||||  |||| |||||  
cgguggug           gguaca cgu   aug GAUGAGUCUU CCACG  GAAU guuua a
        --uuuacaaca      a   gua   A          C     --    -     u 

>ppy-mir-507 (-36.20)   [ppy-miR-507:56-76]

gug    -     g  c            a    cau      guc 
   cugu gugua ug uucacuucaaga gugc   gcaugu   u
   |||| ||||| || |||||||||||| ||||   ||||||    
   gaca cacgu au AAGUGAGGUUUU CACG   Uguaua   a
---    a     a  a            C    UUU      aag 

>ppy-mir-508 (-39.40)   [ppy-miR-508-5p:26-48] [ppy-miR-508-3p:61-83]

---------ccaccuucagcuga     g   c      C       GU  C   C  aaa 
                       gugua ugc cUACUC AGAGGGC  CA UCA Gu   c
                       ||||| ||| |||||| |||||||  || ||| ||    
                       cacau aug GAUGAG UUUUCCG  GU AGU ca   u
ggugguuuauacggaaugcacua     a   A      U       AU  U   a  aaa 

>ppy-mir-509-1 (-44.10)   [ppy-miR-509-5p:20-40] [ppy-miR-509-3p:55-76]

    c   -   ug    c    -       A   G       --g  u 
caug ugu gug  guac cUAC UGCAGAC GUG CAAUCAu   ua a
|||| ||| |||  |||| |||| ||||||| ||| |||||||   ||  
guac aca uac  caug GAUG ACGUCUG CAU GUUAGUa   au a
    -   g   gu    a    G       -   G       aaa  u 

>ppy-mir-509-2 (-40.50)   [ppy-miR-509-5p:20-40] [ppy-miR-509-3p:55-76]

caugc   -   ug    c    -       A   G       --g  u 
     ugu gug  guac cUAC UGCAGAC GUG CAAUCAu   ua a
     ||| |||  |||| |||| ||||||| ||| |||||||   ||  
     aca uac  caug GAUG ACGUCUG CAU GUUAGUa   au a
----c   g   gu    a    G       -   G       aaa  u 

>ppy-mir-509-3 (-37.10)   [ppy-miR-509-5p:10-30] [ppy-miR-509-3p:45-66]

-- ug    c    -       A   G       --g  u 
  g  guac cUAC UGCAGAC GUG CAAUCAu   ua a
  |  |||| |||| ||||||| ||| |||||||   ||  
  c  caug GAUG ACGUCUG CAU GUUAGUa   au a
ua gu    a    G       -   G       aaa  u 

>ppy-mir-510 (-28.40)   [ppy-miR-510:10-31]

   g   c      -C    A  GG         guuc 
gug ugu cUACUC  GGAG GU  CAAUCACau    a
||| ||| ||||||  |||| ||  |||||||||     
cac aua ggugag  ucuc ca  guuagugug    a
   a   a      aa    -  aa         aacu 

>ppy-mir-511-1 (-33.00)   [ppy-miR-511:16-36]

    a   ac    cG           CU   G   g    ua 
caau gac  ccau  UGUCUUUUGCU  GCA UCA uaaa  u
|||| |||  ||||  |||||||||||  ||| ||| ||||   
guua cug  ggua  acagaaaacga  ugu agu guuu  u
    c   gu    ag           ug   a   -    uu 

>ppy-mir-511-2 (-33.00)   [ppy-miR-511:16-36]

    a   ac    cG           CU   G   g    ua 
caau gac  ccau  UGUCUUUUGCU  GCA UCA uaaa  u
|||| |||  ||||  |||||||||||  ||| ||| ||||   
guua cug  ggua  acagaaaacga  ugu agu guuu  u
    c   gu    ag           ug   a   -    uu 

>ppy-mir-512-1 (-44.80)   [ppy-miR-512-3p:51-72]

u       ug   - g      cu   g       ----    g 
 cucaguc  ugg c cucagc  ugg ggcacuu    ucug u
 |||||||  ||| | ||||||  ||| |||||||    ||||  
 gagucag  acC G GAGUCG  ACU UCGUGAA    agac g
g       ua   U -      AU   G       agua    c 

>ppy-mir-512-2 (-47.90)   [ppy-miR-512-3p:57-78]

   a   --       ug   - g      cu   g       ----    g 
ggu cuu  cucaguc  ugg c cucagc  ugg ggcacuu    ucug u
||| |||  |||||||  ||| | ||||||  ||| |||||||    ||||  
cca gag  gagucag  acC G GAGUCG  ACU UCGUGAA    agac g
   c   cg       ua   U -      AU   G       agua    c 

>ppy-mir-513a-1 (-55.40)   [ppy-miR-513a-5p:37-54] [ppy-miR-513a-1-3p:72-93]

            --u   -c   u ag      g   c    A   GG     UC        gaa 
gggaugccacau   cag  cau c  uguaca ugc uUUC CAG  AGGUG  AUuuaugu   c
||||||||||||   |||  ||| |  |||||| ||| |||| |||  |||||  ||||||||    
cccuguggugua   guc  gua g  acaugu aug GAAG GUC  UCCAC  UAAAUaua   u
            uac   ac   c --      a   a    A   UU     UC        aaa 

>ppy-mir-513a-2 (-59.50)   [ppy-miR-513a-5p:36-53] [ppy-miR-513a-2-3p:71-92]

           uca  cauu  --g      g        A   GG     UC        gaa 
ggaugccacau   gc    ca   ugugca ugccuUUC CAG  AGGUG  AUuuaugu   c
|||||||||||   ||    ||   |||||| |||||||| |||  |||||  ||||||||    
ccuguggugua   cg    gu   acaugu auggGAAG GUC  UCCAC  UAAAUaua   u
           -ug  ucac  acg      a        A   UU     UU        aaa 

>ppy-mir-513b (-35.00)   [ppy-miR-513b:14-35]

--g      g   c    A          U         gaa 
   uguaca ugc uUUC CAAGGAGGUG CAUUUAUgu   c
   |||||| ||| |||| |||||||||| |||||||||    
   acaugu aug gaag guuuuuccac guaaaugua   u
acg      a   a    a          u         aaa 

>ppy-mir-513c (-33.50)   [ppy-miR-513c:12-33]

----     g   c    A   GG     UC        gaa 
    guaca ugc uUUC CAG  AGGUG  AUUUAUgu   c
    ||||| ||| |||| |||  |||||  ||||||||    
    caugu aug gaag guc  uccac  uaaauaua   u
acga     a   a    a   uu     uc        aaa 

>ppy-mir-514-1 (-37.40)   [ppy-miR-514:59-79]

aac    u   -    g   c      -     a   g      u  gua 
   augu guc ugug uac cuacuc uggag gug caauca gu   a
   |||| ||| |||| ||| |||||| ||||| ||| |||||| ||    
   uaca cag acgc aug GAUGAG GUCUC CAC GUUAgu ua   u
gca    -   u    a   A      U     -   A      u  aau 

>ppy-mir-514-2 (-35.50)   [ppy-miR-514:54-74]

gu    -    g   c      -     a   g      u  gua 
  uguc ugug uac cuacuc uggag gug caauca gu   a
  |||| |||| ||| |||||| ||||| ||| |||||| ||    
  acag acgc aug GAUGAG GUCUC CAC GUUAgu ua   u
-c    u    a   A      U     -   A      u  aau 

>ppy-mir-514-3 (-35.50)   [ppy-miR-514:54-74]

gu    -    g   c      -     a   g      u  gua 
  uguc ugug uac cuacuc uggag gug caauca gu   a
  |||| |||| ||| |||||| ||||| ||| |||||| ||    
  acag acgc aug GAUGAG GUCUC CAC GUUAgu ua   u
-c    u    a   A      U     -   A      u  aau 

>ppy-mir-515-1 (-40.80)   [ppy-miR-515-5p:14-37] [ppy-miR-515-3p:51-72]

     u     c  U           A    UU      gu 
ucuca gcagu aU CUCCAAAAGAA GCAC  UCUGuu  c
||||| ||||| || ||||||||||| ||||  ||||||  u
agagu uguca UG GAGGUUUUCUU CGUG  AGacga  g
     u     U  C           C    --      aa 

>ppy-mir-515-2 (-40.80)   [ppy-miR-515-5p:14-37] [ppy-miR-515-3p:51-72]

     u     c  U           A    UU      gu 
ucuca gcagu aU CUCCAAAAGAA GCAC  UCUGuu  c
||||| ||||| || ||||||||||| ||||  ||||||  u
agagu uguca UG GAGGUUUUCUU CGUG  AGacga  g
     u     U  C           C    --      aa 

>ppy-mir-516a-1 (-45.70)   [ppy-miR-516a-5p:16-38] [ppy-miR-516a-3p:61-78]

              cU    GAG     -           guug  u 
ucucaggcugugac  UCUC   GAAAG AAGCACUUUCu    uc g
||||||||||||||  ||||   ||||| |||||||||||    || a
agaguuuggcauUG  AGAG   CUUUC UUCGUgaaaga    ag a
              --    --A     C           --aa  a 

>ppy-mir-516a-2 (-45.70)   [ppy-miR-516a-5p:16-38] [ppy-miR-516a-3p:61-78]

              cU    GAG     -           guug  u 
ucucaggcugugac  UCUC   GAAAG AAGCACUUUCu    uc g
||||||||||||||  ||||   ||||| |||||||||||    || a
agaguuuggcauUG  AGAG   CUUUC UUCGUgaaaga    ag a
              --    --A     C           --aa  a 

>ppy-mir-516b-1 (-44.90)   [ppy-miR-516b:16-37]

       cu      A        UAA            g    g 
ucucagg  gugacc UCUGGAGG   GAAGCACUUUcu uuuu u
|||||||  |||||| ||||||||   |||||||||||| |||| g
agaguuu  cauugg agacuuuc   cuucgugaaaga aaga a
       cu      g        ---            a    a 

>ppy-mir-516b-2 (-39.60)   [ppy-miR-516b:17-38]

     -u     uga  A        UAA            g    g 
ucuca  gagug   cc UCUGGAGG   GAAGCACUUUuu uuuu u
|||||  |||||   || ||||||||   |||||||||||| |||| g
agagu  cucau   gg agacuuuc   cuucgugaaaga aaga a
     uu     uag  -        ---            a    a 

>ppy-mir-517a (-42.80)   [ppy-miR-517a:54-75]

              c       u   a    u    g  g a 
ucucaggcagugac cucuaga gga gcac gucu uu u u
|||||||||||||| ||||||| ||| |||| |||| || | a
agaguuugucauUG GAGAUUU CCU CGUG UAga aa a a
              U       C   A    C    a  g a 

>ppy-mir-517b (-26.50)   [ppy-miR-517b:46-67]

     c       u   a    u    g  g a 
gugac cucuaga gga gcac gucu uu u u
||||| ||||||| ||| |||| |||| || | a
caUUG GAGAUUU CCU CGUG Uaga aa a a
     U       C   A    C    a  g a 

>ppy-mir-517c (-43.90)   [ppy-miR-517c:59-80]

gaaga              c       u   a    u    g  g a 
     ucucaggcagugac cucuaga gga gcac gucu uu u u
     |||||||||||||| ||||||| ||| |||| |||| || | a
     agaguuugucauUG GAGAUUU CCU CGUG UAga aa a a
--aaa              U       C   A    C    a  g a 

>ppy-mir-518a-1 (-48.50)   [ppy-miR-518a-5p:16-35] [ppy-miR-518a-3p:53-74]

     u        u  G           C      guug  u 
ucuca gcugugac CU CAAAGGGAAGC CUUUCu    uc a
||||| |||||||| || ||||||||||| ||||||    || a
agagu uggcauuG GA GUUUCCCUUCG GAAAGa    ag a
     u        U  G           C      --aa  a 

>ppy-mir-518a-2 (-48.50)   [ppy-miR-518a-5p:16-35] [ppy-miR-518a-3p:53-74]

     u        u  G           C      guug  u 
ucuca gcugugac CU CAAAGGGAAGC CUUUCu    uc a
||||| |||||||| || ||||||||||| ||||||    || a
agagu uggcauuG GA GUUUCCCUUCG GAAAGa    ag a
     u        U  G           C      --aa  a 

>ppy-mir-518b (-40.20)   [ppy-miR-518b:51-72]

   u  u    c            a         guug  u 
uca gc guga ccucuagaggga gcgcuuucu    uc g
||| || |||| |||||||||||| |||||||||    || a
agu ug cauu GGAGAUUUUCCU CGUGAAAGa    ag a
   u  u    U            A         --aa  a 

>ppy-mir-518c (-46.40)   [ppy-miR-518c:62-84]

gcgagaaga     u        u              a   uc    g  u 
         ucuca gcugugac cucuggagggaagc cuu  uguu uc g
         ||||| |||||||| |||||||||||||| |||  |||| || a
         agagu uggcauUG GAGAUUUCUCUUCG GAA  ACaa ag a
----cgaaa     u        U              C   --    a  a 

>ppy-mir-518d (-40.00)   [ppy-miR-518d-5p:13-34] [ppy-miR-518d-3p:50-70]

---  u        u              A   UC    g  u 
   ca gcugugac CUCUGGAGGGAAGC CUU  UGuu uc g
   || |||||||| |||||||||||||| |||  |||| || a
   gu uggcauug GAGAUUUCUCUUCG GAA  ACaa ag a
aga  u        U              C   --    a  a 

>ppy-mir-518e (-44.10)   [ppy-miR-518e:54-74]

       cu    c               a     ---    gu 
ucucagg  guga ccucuagagggaagc cuuuc   ucuu  c
|||||||  |||| ||||||||||||||| |||||   ||||   
agaguuu  cauu GGAGAUUUCUCUUCG GAAAg   agaa  u
       cu    A               C     aaa    aa 

>ppy-mir-518f (-42.30)   [ppy-miR-518f:53-73]

     ugcu    c               a     ---    gu 
ucuca    guga ccucuagagggaagc cuuuc   ucuu  c
|||||    |||| ||||||||||||||| |||||   ||||   
agagu    cauu GGAGAUUUCUCUUCG GAAAG   agaa  u
     uucu    a               C     aaa    aa 

>ppy-mir-519a (-42.80)   [ppy-miR-519a:53-74]

    u  u    c            a         guug  u 
cuca gc guga ccucuagaggga gcgcuuucu    uc g
|||| || |||| |||||||||||| |||||||||    || a
gagu ug cauU GGAGAUUUUCCU CGUGAAAga    ag a
    u  u    U            A         --aa  a 

>ppy-mir-519f (-33.60)   [ppy-miR-519f:50-71]

----    u  g  c     c     a         guug  u 
    aggc gu ac cucua aggga gcacuuucu    uc g
    |||| || || ||||| ||||| |||||||||    || a
    uuug ca UG GAGAU UUCCU CGUGAAAgg    ag a
agag    u  g  U     U     A         --aa  a 

>ppy-mir-519b (-38.30)   [ppy-miR-519b-5p:13-34] [ppy-miR-519b-3p:51-72]

  u  u    c            A         Guug  u 
ca gc guga cCUCUAGAGGGA GCGCUUUCU    uc g
|| || |||| |||||||||||| |||||||||    || a
gu ug cauU GGAGAUUUUCCU CGUGAAAga    ag a
  u  u    U            A         --aa  a 

>ppy-mir-519c (-42.90)   [ppy-miR-519c-5p:16-37]

u    u  u    c            A         Guug  u 
 cuca gc guga cCUCUAGAGGGA GCGCUUUCU    uc g
 |||| || |||| |||||||||||| |||||||||    || a
 gagu ug cauu ggagauuuuccu cgugaaaga    ag a
-    u  u    u            a         --aa  a 

>ppy-mir-519d (-31.10)   [ppy-miR-519d:51-72]

---  u  u     c   c       a      cc    u uuu 
   ca gc gugac cuc aaaggga gcacuu  uguu g   u
   || || ||||| ||| ||||||| ||||||  |||| |    
   gu ug cauuG GAG UUUCCCU CGUGAA  ACaa u   c
agg  u  c     U   A       C      --    c ucu 

>ppy-mir-519e (-34.20)   [ppy-miR-519e:55-76]

     u     c  u   c      ga      uc    g  u 
ucuca gcagu au cuc aaaagg  guacuu  uguu uc g
||||| ||||| || ||| ||||||  ||||||  |||| || a
agagu uguca UG GAG UUUUCC  CGUGAA  acaa ag a
     u     U  U   A      UC      --    a  a 

>ppy-mir-520a (-41.10)   [ppy-miR-520a-5p:15-35] [ppy-miR-520a-3p:53-74]

cuca     u   cC                    g  g    
    ggcug gac  UCCAGAGGGAAGUACUUUCU uu ucu 
    ||||| |||  |||||||||||||||||||| || || g
    uuggc uUG  AGGUUUCCCUUCGUGAAAga aa aga 
----     u   UC                    a  g    

>ppy-mir-520b (-42.60)   [ppy-miR-520b:41-61]

                       guug  u 
cccucuacagggaagcacuuucu    uc g
|||||||||||||||||||||||    || a
GGGAGAUGUUCCUUCGUGAAAga    ag a
                       --aa  a 

>ppy-mir-520c (-55.90)   [ppy-miR-520c-5p:16-37] [ppy-miR-520c-3p:54-75]

        u                           Guug  u 
ucucaggc gugaucCUCUGGAAGGAAGCACUUUCU    uc g
|||||||| |||||||||||||||||||||||||||    || a
agaguuug cauUGGGAGAUUUUCCUUCGUGAAAga    ag a
        c                           --aa  a 

>ppy-mir-520d (-43.40)   [ppy-miR-520d-5p:16-35] [ppy-miR-520d-3p:54-75]

     u          UA           C      --g  gu 
ucuca gcugugacuC  CAAAGGGAAGC CUUUCu   uu  c
||||| ||||||||||  ||||||||||| ||||||   ||  u
agagu uggcauUGGG  GUUUCUCUUCG GAAAga   aa  a
     u          UG           U      aaa  aa 

>ppy-mir-520e (-39.90)   [ppy-miR-520e:54-74]

    cu  u     a       u       a     guug   g 
ucuc  gc gugac cucaaga ggaagca uuucu    ucu a
||||  || ||||| ||||||| ||||||| |||||    |||  
agag  ug cauuG GAGUUUU CCUUCGU AAAga    agg a
    uu  u     G       U       G     ---a   a 

>ppy-mir-520f (-53.00)   [ppy-miR-520f:55-76]

        u                        u  gugg  a 
ucucaggc gugacccucuaaagggaagcacuu cu    uc g
|||||||| |||||||||||||||||||||||| ||    || a
aggguuug caUUGGGAGAUUUUCCUUCGUGAA ga    ag a
        c                        c  --aa  a 

>ppy-mir-520g (-43.70)   [ppy-miR-520g:55-78]

     c  u     c         -        -----   g    u 
uccca gc gugac cucuagagg aagcacuu     ucu uuug u
||||| || ||||| ||||||||| ||||||||     ||| ||||  
agggu ug cauUG GAGAUUUCC UUCGUGAA     aga aggc g
     u  c     U         C        ACAaa   g    u 

>ppy-mir-520h (-40.90)   [ppy-miR-520h:55-76]

     c  u     c         -         cug   g  gu 
uccca gc gugac cucuagagg aagcacuuu   uuu uu  c
||||| || ||||| ||||||||| |||||||||   ||| ||   
agggu ug cauug GAGAUUUCC UUCGUGAAA   aaa ag  c
     u  -     U         C         -CA   g  ag 

>ppy-mir-521-1 (-36.60)   [ppy-miR-521:54-75]

        u     c   c         aa u    guug  u 
ucucaugc gugac cuc aaagggaag  c uucu    uc a
|||||||| ||||| ||| |||||||||  | ||||    || a
agagugug cauUG GAG UUUCCCUUC  G AAga    ag a
        c     U   A         AC C    --aa  a 

>ppy-mir-521-2 (-37.60)   [ppy-miR-521:59-80]

     g  u     u   c         aa u    guug   aaa 
ucuca gc gugac cuc aaagggaag  c uucu    ucu   a
||||| || ||||| ||| |||||||||  | ||||    |||    
agagu ug cauUG GAG UUUCCCUUC  G AAga    aga   g
     g  c     U   A         AC C    --aa   aaa 

>ppy-mir-522 (-39.00)   [ppy-miR-522:54-75]

      -   g    c            g  c     guug  u 
ucucag gcu ugac cucuagagggga ca uuucu    uc g
|||||| ||| |||| |||||||||||| || |||||    || a
agaguu cgg auUG GAGAUUUCCCUU GU AAAga    ag a
      u   -    U            G  A     --aa  a 

>ppy-mir-523 (-43.20)   [ppy-miR-523:53-75]

     ugcu           g        a u    gucg  u 
ucucg    gugacccucua agggaagc c uucu    uc g
|||||    ||||||||||| |||||||| | ||||    || a
agagu    cauUGGGAGGU UCCCUUCG G AAGa    ag a
     uucc           A        C C    --aa  a 

>ppy-mir-524 (-45.20)   [ppy-miR-524-5p:16-37] [ppy-miR-524-3p:53-73]

     u        c  A           A      Cuug  u 
ucuca gcugugac CU CAAAGGGAAGC CUUUCU    uc a
||||| |||||||| || ||||||||||| ||||||    || a
agagu uggcauug GA GUUUCCCUUCG GGAAGa    ag a
     u        U  G           C      --aa  g 

>ppy-mir-525 (-44.50)   [ppy-miR-525-5p:15-35] [ppy-miR-525-3p:53-74]

             u   C          A      c  a gu 
cucaggcugugac CUC AGAGGGAUGC CUUUCU uu u  g
||||||||||||| ||| |||||||||| |||||| || |   
ggguuuggcauuG GAG UUUCCCUACG GGAAGa aa a  a
             C   A          C      a  a aa 

>ppy-mir-526a-1 (-42.20)   [ppy-miR-526a:15-35]

      cu    c               A     ---    gu 
cucagg  guga cCUCUAGAGGGAAGC CUUUC   Ucuu  c
||||||  |||| ||||||||||||||| |||||   ||||   
gaguuu  cauu ggagauuucucuucg gaaag   agaa  u
      cu    a               c     aaa    aa 

>ppy-mir-526a-2 (-37.60)   [ppy-miR-526a:7-27]

    c            A         g   g 
guga cCUCUAGAGGGA GCACUUUCU uuu a
|||| |||||||||||| ||||||||| |||  
cauu ggagauuuuccu cgugaaagg aag a
    a            a         a   a 

>ppy-mir-526b (-42.60)   [ppy-miR-526b:14-36]

      u    c    --UU             U  GUug   g 
ucaggc guga cCUC    GAGGGAAGCACUU CU    ucu a
|||||| |||| ||||    ||||||||||||| ||    |||  
agucug cauu ggag    uuuccuucgugaa ga    aga a
      u    c    uauu             c  --aa   a 

>ppy-mir-527 (-46.40)   [ppy-miR-527:16-35]

     u        u    -          C      guug  u 
ucuca gcugugac CUGC AAAGGGAAGC CUUUCu    uc a
||||| |||||||| |||| |||||||||| ||||||    || a
agagu uggcauug gaug uuucccuucg gaaaga    ag a
     u        -    g          u      --aa  a 

>ppy-mir-532 (-30.92)   [ppy-miR-532-5p:20-41] [ppy-miR-532-3p:57-78]

cgacuu    u    c  c  U      A    A   CC  uggca 
      gcuu cucu cu CA GCCUUG GUGU GGA  GU     u
      |||| |||| || || |||||| |||| |||  ||     c
      cgag gaga gA GU CGGAAC CACA CCU  ca     u
----uc    c    a  C  U      C    C   CC  uuaau 

>ppy-mir-539 (-29.20)   [ppy-miR-539:9-30]

     ug          A      G    -    - uuu 
auacu  aGGAGAAAUU UCCUUG UGUG Uucg c   a
|||||  |||||||||| |||||| |||| |||| |   u
uauga  uuuucuuuaa aggaac auac aagu g   u
     gu          c      -    u    a uau 

>ppy-mir-541 (-31.20)   [ppy-miR-541:54-75]

-   -u     aaa        c    g uc    u   aaguu 
 acg  caggg   ggauucug uguc g  ccac cca     u
 |||  |||||   |||||||| |||| |  |||| |||      
 ugu  gucUC   CCUAAGAC ACGG U  GGUg ggu     a
g   uc     AGG        -    G --    -   aagac 

>ppy-mir-542 (-35.90)   [ppy-miR-542-5p:16-38] [ppy-miR-542-3p:53-74]

---------caga        auc    GG    UCA         -A   c 
             ucucagac   UCGG  AUCA   UGUCACGAG  uac a
             ||||||||   ||||  ||||   |||||||||  |||  
             agggucug   AGUC  UAGU   ACAGUGUuc  gug g
cuucuacucaccg        gAA    AA    UAG         ac   u 

>ppy-mir-543 (-25.50)   [ppy-miR-543:47-68]

--    u  u       u  -     ---u    u    uu 
  uacu aa gagaagu gc ccgug    uuuu ucgc  u
  |||| || ||||||| || |||||    |||| ||||  a
  auga uu UUCUUCA CG GGCGC    AAAg agug  u
cu    c  u       -  U     UUAC    c    uu 

>ppy-mir-544 (-32.60)   [ppy-miR-544:55-76]

auuuu      cua    u           -     u   -ga  c 
     caucac   ggga cuuguuaaaaa gcaga ucu   uu a
     ||||||   |||| ||||||||||| ||||| |||   ||  
     guagug   cuCU GAACGAUUUUU CGUCU Aga   ag g
uaauc      -aa    U           A     U   acc  g 

>ppy-mir-545 (-37.52)   [ppy-miR-545:63-84]

cccag    ------g   a         - u            a  a     auaaa 
     ccug       cac uuaguaggc c caguaaauguuu uu gauga     u
     ||||       ||| ||||||||| | |||||||||||| || |||||     g
     ggac       gug aaucgucCG G GUUAUUUACAAA GA CUacu     a
-----    accucga   a         U U            C  -     cagua 

>ppy-mir-549 (-53.20)   [ppy-miR-549:61-81]

agacaugcaacucaaga                                ucu 
                 auauauugagagcucauccauaguugucacug   c
                 ||||||||||||||||||||||||||||||||    
                 uauauaauUCUCGAGUAGGUAUCAACAGUgac   a
----------cggaccc                                uag 

>ppy-mir-551a (-56.70)   [ppy-miR-551a:61-81]

ggggacug  -   ug            c         ggg     ucuga 
        cc ggg  acccuggaaauc agagugggu   gccug     c
        || |||  |||||||||||| |||||||||   |||||      
        gg ccc  ugggACCUUUGG UCUCACCCA   CGgau     c
-----aaa  u   gu            U         --G     cuuug 

>ppy-mir-551b (-44.10)   [ppy-miR-551b:61-81]

agaugugc    c     ca                 - -aga    gug 
        ucuc uggcc  ugaaaucaagugugggu g    ccug   c
        |||| |||||  ||||||||||||||||| |    ||||    
        agag gucgg  ACUUUGGUUCAUACCCA C    gggc   a
-----aua    u     aG                 G Ggaa    aag 

>ppy-mir-553 (-18.20)   [ppy-miR-553:16-36]

cuucaau    u       G  U        G  UU 
       uuua uuuAAAA GG GAGAUUUU UU  g
       |||| ||||||| || |||||||| ||   
       gagu agauuuu uc cucuaaaa ag  u
------g    c       g  u        g  uc 

>ppy-mir-554 (-18.80)   [ppy-miR-554:16-35]

-----a  --u   uaaccuu      --------    -     --GC    a   g 
      cc   gag       uGCUAG        UCCU ACUCA    CGGU cug u
      ||   |||       ||||||        |||| |||||    |||| |||  
      gg   cuc       acgguu        ggga ugggu    guca gau c
ucuacg  ucc   ----ucu      uuauacuu    c     agua    -   u 

>ppy-mir-555 (-34.40)   [ppy-miR-555:61-81]

-------     gaac     u   g   ac      u  ga    u  gac 
       ggagu    ucaga gug agc  uaccuu gu  gcag gu   c
       |||||    ||||| ||| |||  |||||| ||  |||| ||    
       ucuca    AGUCU CAC UCG  AUGGGA ca  uguc cg   c
uaucuag     aaaU     C   G   -A      -  gg    -  gaa 

>ppy-mir-556 (-41.10)   [ppy-miR-556-5p:16-37] [ppy-miR-556-3p:55-76]

-------ga    g                C            ---  uuc 
         uagu auaagaaaGAUGAGCU AUUGUAAUAUGA   Gc   a
         |||| |||||||||||||||| ||||||||||||   ||   u
         auca uauuuUUUCUACUCGA UAACAUUAUAcu   cg   u
acaacuucc    g                U            uua  uau 

>ppy-mir-557 (-33.00)   [ppy-miR-557:61-83]

agaaugggcaaaugaacaguaaa  ug     cu       u   -   ---u   g 
                       uu  gaggc  ggggccc ccc ugc    gcu g
                       ||  |||||  ||||||| ||| |||    ||| a
                       aa  uUCUG  UUCCGGG GGG ACG    uga g
-------------agguggagga  gu     --       U   U   UUUG   a 

>ppy-mir-558 (-46.10)   [ppy-miR-558:61-79]

gugugugu  g   g      u                  u   -cu     
        gu ugu uguggu auuuugguauaguagcuc agg   cuau 
        || ||| |||||| |||||||||||||||||| |||   ||| u
        cg aca acacca UAAAACCAUGUCGUCGAG Ucc   gaua 
------gu  g   a      -                  -   uuu     

>ppy-mir-559 (-56.60)   [ppy-miR-559:16-36]

-----                          A            cu  u 
     gcuccaguaacaucuUAAAGUAAAUA GCACCAAAAuua  uu g
     |||||||||||||||||||||||||| ||||||||||||  || g
     cgaggucauuguaggauuucauuuau cgugguuuugau  aa u
acccu                          a            au  a 

>ppy-mir-562 (-24.20)   [ppy-miR-562:61-80]

agugaa       -----   -  u     -   u       ua   u   u u 
      auugcua     ggu ca auggu cag cuacuuu  gag aau g g
      |||||||     ||| || ||||| ||| |||||||  ||| ||| | a
      uaacggu     uca GU UACCA GUC GAUGAAA  cuu uug c a
------       guccc   C  U     U   -       -c   -   u a 

>ppy-mir-563 (-27.30)   [ppy-miR-563:49-67]

aaagaag  u      cucca              cu       
       ug guugcc     ggaaauguguguug  cugaug 
       || ||||||     ||||||||||||||  ||||| u
       ac cgaugg     CCUUUACAUACAGU  GAuuaa 
-------  -      ---uC              UG       

>ppy-mir-564 (-54.40)   [ppy-miR-564:16-34]

---c   -c     g   cA         G A  ----    aaca     g 
    ggg  ggcgg cgc  GGCACGGUG C GC    AGGC    uggcu a
    |||  ||||| |||  ||||||||| | ||    ||||    |||||  
    ccc  ccgcc gcg  cugugccgc g cg    uccg    gccgg g
cagu   au     a   -a         g -  ggcc    --gg     a 

>ppy-mir-566 (-27.60)   [ppy-miR-566:12-30]

--------------------gg  u   gg      --C    GA     A  a u 
                      cg ggu  cGGGCG   CUGU  UCCCA Cu c c
                      || |||  ||||||   ||||  ||||| || |  
                      gc cca  guucgu   gacg  ggggu gg g a
cgagugacguuggaagcggagg  -   -a      uaa    ac     c  a g 

>ppy-mir-567 (-28.60)   [ppy-miR-567:16-38]

-----------ggauucuua   gacA              GG     ---  u 
                    uag    GUAUGUUCUUCCAG  CAGAA   Ca u
                    |||    ||||||||||||||  |||||   || c
                    auc    cguacaagaagguc  guuuu   gu u
cguuauugaaaaaaaaaaaa   aaaa              au     auc  u 

>ppy-mir-568 (-32.00)   [ppy-miR-568:16-35]

--g        -     u        A         ACuucc       a 
   auauacac uauau AUGUAUAA UGUAUACAC      uauaugu u
   |||||||| ||||| |||||||| |||||||||      |||||||  
   uaugugug auaug uacauauu auauaugug      auauaca c
gua        g     -        -         --auau       c 

>ppy-mir-569 (-19.40)   [ppy-miR-569:61-81]

-    uu    ga        g     --       aacaucaucagca 
 ggua  guua  uuaauuuu uggga  cauuaac             g
 ||||  ||||  |||||||| |||||  |||||||              
 uuau  cagu  aauUGAAA GUCCU  GUAAUUG             c
u    uu    -g        G     AA       Auuucgacuacaa 

>ppy-mir-571 (-31.30)   [ppy-miR-571:61-81]

ccuc      ----a  aa      -  u    u   -cuu   ug   cc 
    aguaag     cc  gcucag ug gcca uuc    guc  uag  a
    ||||||     ||  |||||| || |||| |||    |||  |||   
    uuauuc     gG  UGAGUC AC CGGU GAG    cgg  guc  u
---c      guccg  AG      U  -    U   Uucu   gu   ug 

>ppy-mir-573 (-26.50)   [ppy-miR-573:16-39]

uuu    g g   ---      AGUGAU        -G      au u  u 
   agag u ucu   ccCUGA      GCAUGACU  AUCAGg  c ac c
   |||| | |||   ||||||      ||||||||  ||||||  | ||  
   uuuu a agg   gggacu      uguauuga  ugguuu  g ug g
-gu    g g   agu      guucgu        aa      cu c  u 

>ppy-mir-575 (-35.30)   [ppy-miR-575:61-79]

---------aauuca  -    -   -         -  -  u   --        
               gc ccug cca cuggcuuau gu ca gac  cuugggc 
               || |||| ||| ||||||||| || || |||  |||||| u
               CG GGAC GGU GACCGGGua ca gu cug  ggacuca 
cucaacucaccguga  A    A   U         a  c  -   uc        

>ppy-mir-576 (-48.40)   [ppy-miR-576-5p:16-37] [ppy-miR-576-3p:55-76]

--------ua     c                 C            g   ua 
          caauc aaugaggAUUCUAAUUU UCCAUGUCUUUg uaa  a
          ||||| ||||||||||||||||| |||||||||||| |||   
          guuag uuacucCUAAGGUUAAA AGGUGUAGAAac guu  g
accaauauug     c                 A            g   uu 

>ppy-mir-577 (-49.02)   [ppy-miR-577:16-36]

-----------                       A      U     augaa 
           ugggggagugaagagUAGAUAAA UAUUGG ACCUG     u
           ||||||||||||||||||||||| |||||| |||||     c
           accccuuuacuucucgucuauuu auaacu uggac     u
cauucaucuau                       c      u     cggag 

>ppy-mir-578 (-41.00)   [ppy-miR-578:60-80]

gauaaauc                   c   ca          ccu      
        uauagacaaaauacaaucc aga  acaagaagcu   auagc 
        ||||||||||||||||||| |||  ||||||||||   |||| u
        auauuuguuuuaUGUUAGG UCU  UGUUCUUCga   ugucc 
-----uau                   A   CG          ---      

>ppy-mir-579 (-49.80)   [ppy-miR-579:62-84]

cauauuag   a                                cg     aa 
        guu augcaaaaguaaucgcgguuugugccagauga  auuug  u
        ||| ||||||||||||||||||||||||||||||||  |||||   
        caa uacguuuuuaUUAGCGCCAAAUAUGGUUUACU  Uaaau  u
--------   c                                --     ga 

>ppy-mir-580 (-57.30)   [ppy-miR-580:61-82]

auaa      c                                   uaa 
    aauuuc aauuggaaccuaaugauucaucagacucagauauu   g
    |||||| |||||||||||||||||||||||||||||||||||   u
    uuaaag uugaccuuGGAUUACUAAGUAGUCUGAGUUuauga   u
----      a                                   caa 

>ppy-mir-581 (-38.90)   [ppy-miR-581:16-36]

-------   a    a          -       C       G   uuua 
       guu ugug agguauUCUU GUGUUCU UAGAUCA Ugc    g
       ||| |||| |||||||||| ||||||| ||||||| |||    a
       caa acac uccauaagaa cacaaga aucuagu gug    a
cguccac   g    a          a       a       -   uuaa 

>ppy-mir-582 (-44.04)   [ppy-miR-582-5p:16-38] [ppy-miR-582-3p:53-74]

----------auc  ug       aUUA                   Uaaucu 
             ug  cucuuug    CAGUUGUUCAACCAGUUAC      a
             ||  |||||||    |||||||||||||||||||       
             ac  gggaaac    GUCAACAAGUUGGUCAAUg      a
uuacaaagaugaa  gu       CCAA                   uuaauc 

>ppy-mir-583 (-41.00)   [ppy-miR-583:16-36]

aacucacacauuu          A             - c     
             acCAAAGAGG AGGUCCCAGUACu c aggg 
             |||||||||| ||||||||||||| | ||| a
             ugguuucucc uccagggucauga g uucu 
-------------          a             c a     

>ppy-mir-584 (-56.00)   [ppy-miR-584:16-37]

-------     u         UUA     U            G a   ug 
       uaggg gaccagcca   UGGUU GCCUGGGACUGA g auu  c
       ||||| |||||||||   ||||| |||||||||||| | |||   
       guccc cugguuggu   accaa cggaccuugacu u uag  u
caacgaa     u         cgg     c            g a   gg 

>ppy-mir-586 (-41.00)   [ppy-miR-586:16-37]

----------au        --                        U C  au 
            gggguaaa  accauUAUGCAUUGUAUUUUUAGG C ca  g
            ||||||||  |||||||||||||||||||||||| | ||  c
            ucucauuu  ugguaaugcguaacauaaaaaucc g gu  g
uauucuucuauu        uu                        c a  gu 

>ppy-mir-587 (-42.22)   [ppy-miR-587:16-36]

cucc    -cacccu        A              a  cu    ga 
    uaug       cUUUCCAU GGUGAUGAGUCACa gg  cagg  a
    ||||       |||||||| |||||||||||||| ||  ||||  u
    auac       gaaaggug ccacuacucagugu cc  gucu  g
----    ccuaccc        a              -  ac    gu 

>ppy-mir-588 (-42.90)   [ppy-miR-588:16-36]

ag       a     -       CAA     U       uau 
  cuuaggu ccaau UUGGCCA   UGGGU AGAACac   u
  ||||||| ||||| |||||||   ||||| |||||||   c
  gaauccg gguua aaccggu   accca ucuugug   c
--       -     u       acc     u       uca 

>ppy-mir-589 (-42.70)   [ppy-miR-589:24-45]

ucca   ugu   cau    cc   A      -   C  C       u   u 
    gcc   gcu   cggc  cUG GAACCA CGU UG UCUGAGc ggg a
    |||   |||   ||||  ||| |||||| ||| || ||||||| ||| c
    cgg   cga   gucg  gac cuuggu gca ac agacuug ucc u
---c   --u   -cc    ca   c      c   a  a       -   g 

>ppy-mir-590 (-31.80)   [ppy-miR-590-5p:16-37] [ppy-miR-590-3p:56-76]

--------uagc        a  G       U       G     ua   u 
            cagucaga au AGCUUAU CAUAAAA UGCAG  ugg g
            |||||||| || ||||||| ||||||| |||||  ||| g
            guuagucu UG UCGAAUA GUAUUUU AUguc  acu a
acgacgugcaaa        c  A       U       A     ua   g 

>ppy-mir-591 (-26.40)   [ppy-miR-591:16-35]

----ucuuaucaa         -   U  -    U  UUG    ---a  g 
             ugaggcAGA CCA GG GUUC CA   Uaau    gu u
             ||||||||| ||| || |||| ||   ||||    || a
             acucugucu ggu cc cagg gu   auug    ua g
cuuagucaucuaa         c   c  u    u  -ca    guug  a 

>ppy-mir-592 (-38.30)   [ppy-miR-592:16-37]

---------ua     c     ca        A    C        gu    a 
           uuaug cauga  UUGUGUCA UAUG GAUGAUGU  ugug u
           ||||| |||||  |||||||| |||| ||||||||  ||||  
           aaugc guacu  aacgcagu gugc cuacugcg  acac g
caacacugcag     a     ac        g    a        --    g 

>ppy-mir-593 (-43.30)   [ppy-miR-593:79-97]

-------c      -  ucuguc     uc    a     ug   --a  -     uc 
        ccccag ag      aggca  agcc ggcau  cuc   gc cccuu  c
        |||||| ||      |||||  |||| |||||  |||   || |||||  c
        GGGGUC UC      UCUGU  uugg ucgug  gag   cg ggggg  u
uccUCUUU      G  ------     --    g     gu   gaa  a     uc 

>ppy-mir-595 (-28.00)   [ppy-miR-595:61-81]

-------------a    a    g    cguuuaacacca       -    g ag   u 
              cgga gccu caug            gcacgcu caau u  ucu g
              |||| |||| ||||            ||||||| |||| |  ||| u
              gUCU UGGG GUAC            CGUGUGA Guug a  agg a
uguccacgaaggag    G    -    ------------       A    g ca   a 

>ppy-mir-596 (-26.90)   [ppy-miR-596:16-36]

agcaca      cccAA  CU  CU    -  --U     ac 
      gccucu     GC  GC  GGCU CC   CGGGa  c
      ||||||     ||  ||  |||| ||   |||||  u
      cggaga     cg  cg  ccga gg   gcccu  g
----gc      cuucc  -c  --    c  cac     cc 

>ppy-mir-597 (-36.00)   [ppy-miR-597:16-37]

u   --          -----g  U     UC  U          aagu  gu 
 acu  uacucuacau      UG GUCAC  GA GACCACUGUg    ca  a
 |||  ||||||||||      || |||||  || ||||||||||    ||   
 ugg  gugagaugua      ac cggug  cu uuggugacau    gu  a
c   uc          augcga  u     uu  c          ----  aa 

>ppy-mir-598 (-38.30)   [ppy-miR-598:61-82]

gcuugaugaugcugcugaugcu         cc     gu  g   uggaa 
                      ggcggugau  cgaug  gu agc     a
                      |||||||||  |||||  || |||      
                      CUGCUACUG  GCUAC  CA Ucg     u
------gagccuacuacuacuA         UU     UG  -   ugggg 

>ppy-mir-599 (-39.00)   [ppy-miR-599:61-80]

aaagacaugcu     c     --                 gg     -   u 
           gucca agugu  guuugauaagcugacau  gacag gga u
           ||||| |||||  |||||||||||||||||  ||||| ||| c
           uaggu ucaua  CAAACUAUUUGACUGUG  UUGuc cuu u
--------cag     -     cc                 --     a   u 

>ppy-mir-600 (-39.50)   [ppy-miR-600:57-79]

aagucacgu  u u    cca    cau  g               ca   ag 
         gc g ggcu   gcuu   ag aaggcucuugucugu  agc  u
         || | ||||   ||||   || |||||||||||||||  |||   
         cg c ccga   cgga   UC UUCCGAGAACAGACA  UUG  g
-------cc  u -    --c    --C  G               --   Ag 

>ppy-mir-601 (-23.20)   [ppy-miR-601:16-37]

ugcaugag       --U  --UC       G    A  -   ca 
        uucaucu   GG    UAGGAUU UUGG GG AGu  g
        |||||||   ||    ||||||| |||| || |||  a
        agguggg   cc    guccuag gacc cc uua  a
--------       uuu  uaaa       g    -  a   aa 

>ppy-mir-602 (-34.80)   [ppy-miR-602:13-35]

---------  a   cc        C   C  -CA   GC    Ugcu  g 
         uc ccc  gccuGACA GGG GA   GCU  GGCC    gu u
         || |||  |||||||| ||| ||   |||  ||||    ||  
         ag ggg  cggacugu ccu cu   uga  ccgg    ca u
guccccccg  a   aa        -   -  acc   -a    -ucu  c 

>ppy-mir-603 (-36.80)   [ppy-miR-603:61-82]

gauugaugc      u    u             ug   cuuc     ua 
         uguugg uugg gcaaaaguaauug  gug    ccauu  a
         |||||| |||| |||||||||||||  |||    |||||  a
         auaauu aacc CGUUUUCAUUAAC  CAC    gguaa  a
---------      c    u             GU   ACAC     ug 

>ppy-mir-604 (-27.20)   [ppy-miR-604:61-79]

agagcaucgugcuucacc       cucc  -     ----a  a    g -ag   u 
                  uuccaug    cg ugucc     cu gcag c   guu u
                  |||||||    || |||||     || |||| |   |||  
                  gagguac    gc aCAGG     GG CGUC G   cag c
-----------------a       -uac  g     ACUUA  G    G Aca   u 

>ppy-mir-605 (-54.50)   [ppy-miR-605:16-38]

gcccu                               CU  gg 
     agcuugguucUAAAUCCCAUGGUGCCUUCUC  ug  a
     |||||||||||||||||||||||||||||||  ||  a
     uugaaccaagauuuaggguaucacggaagag  ac  a
-----                               --  aa 

>ppy-mir-606 (-45.10)   [ppy-miR-606:61-81]

------------      c                 u         a    ug 
            uguauc uugguuuuuaguaguuu acuaugaug ggug  c
            |||||| ||||||||||||||||| ||||||||| ||||  c
            acaUAG AACUAAAAAUCAUCAAA ugauacuac ccac  a
accaguccguga      A                 -         c    cu 

>ppy-mir-608 (-27.80)   [ppy-miR-608:15-39]

---gggcaa g  g      -  UG  G  ---C   C    ----------  GUu 
         g ug gccAGG GG  GU UU    GGA AGCU          GC   u
         | || |||||| ||  || ||    ||| ||||          ||   a
         c ac ugguuc cc  cg aa    ccu ucga          cg   a
agaugggca g  g      u  gu  g  acua   -    gaaccccuac  aaa 

>ppy-mir-609 (-61.20)   [ppy-miR-609:16-35]

---ug               A                  gu    aaug 
     cucugcuguuccuAG GUGUUGCUCUCAUCUCUg  cuau    g
     ||||||||||||||| ||||||||||||||||||  ||||     
     gagacgacaaggauc cacaacgggaguagagau  gaua    g
ccaag               c                  --    aaau 

>ppy-mir-610 (-51.20)   [ppy-miR-610:16-36]

-------       g     g           G           aca      
       ucuauuu ucuua gUGAGCUAAAU UGUGCUGGGAc   uuuga 
       ||||||| ||||| ||||||||||| |||||||||||   |||| g
       agguaaa agaau cacucgauuua acacgacccug   aaacc 
ugaucuc       a     a           g           --c      

>ppy-mir-611 (-27.40)   [ppy-miR-611:40-62]

aaaau   g     g        ag   -  gac 
     ggu agauc uugagggg  uuc ca   g
     ||| ||||| ||||||||  ||| ||    
     cCA UCUGG GGCUCCCC  GAG Gu   g
-acac   G     -        AG   C  aga 

>ppy-mir-612 (-56.70)   [ppy-miR-612:13-37]

----------ca     acc     ----            -         Ua  a 
            ucugg   cuGCU    GGGGAGGGCUUC GGAGCUCCU  gc c
            |||||   |||||    |||||||||||| |||||||||  ||  
            ggacc   gacgg    ucccucccgggg ccucggggg  cg u
acucucaggaca     ---     uacc            a         ga  a 

>ppy-mir-613 (-29.40)   [ppy-miR-613:61-80]

ggugagugcauuuccaagugu        --    c     g   cu 
                     gaagggac  ccuu cugua ugu  u
                     ||||||||  |||| ||||| |||  a
                     CUUCCUUG  GGGA gacau aca  u
auuucgacauauucaCCGCUU        UA    u     a   ua 

>ppy-mir-614 (-32.66)   [ppy-miR-614:53-75]

ucuaagaaac     gg   -   ga     -  c        cacccu 
          gcagu  ucu cug  gucug ca gagcaggc      g
          |||||  ||| |||  ||||| || ||||||||      c
          cgucg  gga gac  UGGAC GU CUUGUCCG      a
----------     uu   a   GG     C  U        CAAGuc 

>ppy-mir-615 (-52.00)   [ppy-miR-615-5p:17-39] [ppy-miR-615-3p:61-82]

cuc   -a    c      G  UUC     U        Cu    g ug 
   ggg  gggg gggaGG GG   CCCGG GCUCGGAU  cgag g  c
   |||  |||| |||||| ||   ||||| ||||||||  |||| |  u
   ccc  cccc ccUUCU CC   GGGUC CGAGCCUg  gcuu u  u
ccc   aa    -      G  UCU     -        --    g ua 

>ppy-mir-616 (-59.00)   [ppy-miR-616:56-78]

-------u     a       ca                       -  gac 
        uaggu auuccuc  cucaaaacccuccagugacuucc au   a
        ||||| |||||||  ||||||||||||||||||||||| ||    
        gucca uaaggaG  GAGUUUUGGGAGGUUACUGAagg ua   u
aaaauuuu     g       AC                       a  aag 

>ppy-mir-617 (-53.90)   [ppy-miR-617:16-37]

---------------c    u               C              Ccau 
                auca aaggagccuGGACUU CCAUUUGAAGGUGG    u
                |||| ||||||||||||||| ||||||||||||||     
                uagu uuucucggaccugaa gguaaacuuccacc    u
cgaggaguaaauaacu    c               u              aucc 

>ppy-mir-618 (-41.80)   [ppy-miR-618:16-38]

---cu           ccA      A      C        guaauua   a 
     cuuguucacag   AACUCU CUUGUC UUCUGAGU       ugu c
     |||||||||||   |||||| |||||| ||||||||       |||  
     gagcagguguc   uuggga gaacag aggacucg       acg a
agucu           cca      c      -        ----aug   u 

>ppy-mir-619 (-31.90)   [ppy-miR-619:61-84]

cgcccaccucagccucccaaaaugcugggauuaca    ug   --ca   c    ga 
                                   ggca  agc    ccg gguc  c
                                   ||||  |||    ||| ||||   
                                   CCGU  UUG    GGU CCAG  c
----------------gacgucugacugucaGGAC    GU   UACA   -    ua 

>ppy-mir-621 (-29.20)   [ppy-miR-621:61-81]

-----    uu  g      gcu    g  ag  agu  ug u   c   ga 
     uaga  ga gaaggg   gagu gu  gc   gc  c gug guu  u
     ||||  || ||||||   |||| ||  ||   ||  | ||| |||   
     gucu  cu uuuUCC   CUCG CA  CG   CG  g uac cag  g
ccugg    --  g      AUU    A  -A  -GU  Gu -   c   aa 

>ppy-mir-622 (-30.71)   [ppy-miR-622:62-82]

gagaggagcuggacaaguacug          a  g ggagagc   a      u acc 
                      gucucagcag uu a       acc cagugg c   a
                      |||||||||| || |       ||| |||||| |    
                      uagagucguC AG U       UGG GUCACC G   c
---------------------g          G  G -------   A      U ACA 

>ppy-mir-623 (-34.50)   [ppy-miR-623:16-38]

-guacaca     ag    CCU       GC       Uu  a   ua     
        guaga  cGUC   UGCAGGG  UGUUGGG  gc ucc  agcu 
        |||||  ||||   |||||||  |||||||  || |||  ||| g
        cguuu  guag   augucuc  guaaccc  cg agg  ucgu 
gucuucca     cu    ---       au       uu  -   --     

>ppy-mir-624 (-56.60)   [ppy-miR-624:54-74]

-----------                                   -- ag  g 
           aaugcuguuucgagguaguaccaguaccuuguguu  c  ug a
           |||||||||||||||||||||||||||||||||||  |  ||  
           uuacgauagaguUCCAUUAUGGUUAUGGAACACaa  g  ac a
gugaauccaca                                   au ga  c 

>ppy-mir-626 (-19.30)   [ppy-miR-626:61-79]

-------ac   -u        c uguuugug       gaguauuuuuau 
         uga  acauuugu g        agcugag            g
         |||  |||||||| |        |||||||             
         acU  UGUAAACG C        UCGAcuc            c
gaaauuuua   UC        U ------UG       uaguaagucuaa 

>ppy-mir-628 (-36.40)   [ppy-miR-628-5p:23-44] [ppy-miR-628-3p:61-81]

auagcugu  u   a      cA  -   A   A             aaaa 
        ug guc cuuccu  UG CUG CAU UUUACUAGAGGgu    u
        || ||| ||||||  || ||| ||| |||||||||||||     
        ac cgg gaaggg  GC GAC GUG GAAUGAUCUucca    u
-------u  u   -      aA  U   G   A             auaa 

>ppy-mir-630 (-25.80)   [ppy-miR-630:61-82]

aacuuaacaucau       -     -   --c     uu         g 
             acuaccu cuuug uau   auauu  guuauucug u
             ||||||| ||||| |||   |||||  |||||||||  
             ugaUGGA GGGAC AUG   UAUGA  caguaagac c
-uauaucaauucu       A     C   UCU     uc         u 

>ppy-mir-631 (-38.00)   [ppy-miR-631:16-36]

gu      cc    uAGA      C   A  -      a 
  ggggag  uggu    CCUGGC CAG CC UCAGCu c
  ||||||  ||||    |||||| ||| || |||||| a
  ccucuc  accg    ggacug guc gg agucga c
--      ac    ---g      a   a  u      a 

>ppy-mir-632 (-38.10)   [ppy-miR-632:61-79]

-cgccuc       a  g   g            -   ---g  --a   a 
       cuaccgc gu ccu acgggaggcgga gcg    gg   acg g
       ||||||| || ||| |||||||||||| |||    ||   |||  
       gguggug cA GGG UGUCCUUCGUCU UGu    cc   ugc a
ugccaau       -  -   -            G   uuua  ggc   c 

>ppy-mir-633 (-39.40)   [ppy-miR-633:61-83]

-aa    ucu    cuc    ucuug    c                 uaaa 
   ccuc   uagc   uguu     auug gguagauacuauuagcc    a
   ||||   ||||   ||||     |||| |||||||||||||||||    u
   ggag   guug   aCAA     UAAC CCAUCUAUGAUAAUCgg    g
aua    --u    -uu    -----    A                 caga 

>ppy-mir-634 (-29.80)   [ppy-miR-634:61-82]

aaacccaca   c   au  ug cca   a    ---------      u  g 
         cca ugc  uu  g   ugg gggu         uggggc ug u
         ||| |||  ||  |   ||| ||||         |||||| ||  
         ggu acg  AG  U   ACC CCCG         accccg ac g
-ucugauua   -   aC  GU UCG   C    UCCAAuaga      u  u 

>ppy-mir-636 (-53.60)   [ppy-miR-636:61-83]

--ug  g       cggga  gc           c   -cc   u  cu  aa 
    gc gccuggg     gc  gcgggcggggc ggc   cgc gc  gg  u
    || |||||||     ||  ||||||||||| |||   ||| ||  ||   
    cg cggaucc     cg  CGUCCGCCCUG UCG   GUG cg  cc  u
gcug  g       -----  -A           C   UUC   U  cc  aa 

>ppy-mir-637 (-33.80)   [ppy-miR-637:64-87]

---------ug  ua      uguu      --   u     c   --   -uac  uc 
           gc  aggugu    ggcucg  ggc cccca ugc  agu    cc  c
           ||  ||||||    ||||||  ||| ||||| |||  |||    ||  c
           cg  ucUACG    UCGGGC  UCG GGGGU Acg  uca    gg  c
cuucauagaaa  --      --UC      UU   -     C   ag   uuuc  cu 

>ppy-mir-638 (-59.50)   [ppy-miR-638:16-40]

gugagcg     g    GG U   G     U  G GGCCCuagggcgcggaggg 
       ggcgc gcAG  A CGC GGCGG CG C                   c
       ||||| ||||  | ||| ||||| || |                   g
       ucgcg cguc  u gcg ccgcc gc g                   g
-------     g    aa -   g     c  g ucccgcgcgguaagggcca 

>ppy-mir-639 (-41.50)   [ppy-miR-639:61-83]

u   cg     ---------    g        ggagg    --    -      ag 
 ggc  acggg         gcgc cgcggccg     ggcg  gggc ggacgc  a
 |||  |||||         |||| ||||||||     ||||  |||| ||||||   
 ucg  ugucc         CGCG GCGUUGGC     UCGC  ucug uuugcg  g
g   --     cagggaUGU    A        ----G    UA    a      cc 

>ppy-mir-640 (-34.90)   [ppy-miR-640:61-81]

------- ug   --cu     a       aa     gaca   ----     c 
       g  acc    gggca guuccug  gauca    cau    cagau c
       |  |||    ||||| |||||||  |||||    |||    ||||| u
       c  ugg    UCCGU CAAGGAC  CUAGU    gua    gucua a
gggguuc gu   caUC     C       --     Acgg   aaau     u 

>ppy-mir-645 (-42.80)   [ppy-miR-645:61-79]

cagu  -  -aac    c    gc             u   cu         
    uc cu    aggc ucag  caguaccggucug ggc  ggggguug 
    || ||    |||| ||||  ||||||||||||| |||  ||||||| a
    ag ga    uucg AGUC  GUCAUGGUCGGAU Ucg  uccccagg 
---g  a  aaau    u    --             C   --         

>ppy-mir-646 (-32.82)   [ppy-miR-646:61-79]

gaucag      ---   a u    u    a   c g      agcug 
      gagucu   gcc c ggag cggc cgc u cuuuuc     u
      ||||||   ||| | |||| |||| ||| | ||||||     g
      cucgga   CGG G UCUC GUCG GCG A gagaag     a
---uga      cuc   A -    C    -   A g      acccu 

>ppy-mir-647 (-47.00)   [ppy-miR-647:16-36]

aggaaguguu     G      -CA  -CA        -a       gaa  c 
          ggccu UGGCUC   CU   CUUCCUUC  gccccag   gc u
          ||||| ||||||   ||   ||||||||  |||||||   ||  
          ccggg gucggg   ga   ggagggag  cgggguc   ug u
--------gu     g      acg  ccg        ga       ---  g 

>ppy-mir-648 (-36.90)   [ppy-miR-648:16-34]

----a    ag  ac  cc      G    ----     GG  -g     ag 
     ucac  ac  cu  AAGUGU CAGG    GCACU  Ug  gggcc  g
     ||||  ||  ||  |||||| ||||    |||||  ||  |||||   
     agug  ug  ga  uucacg gucc    cguga  gc  cccgg  g
guggg    aa  cu  --      -    agga     aa  ga     gc 

>ppy-mir-650 (-31.90)   [ppy-miR-650:16-36]

----ca     ----------     cuc      C   -UCUC     A   cu 
      gugcu          ggggu   AGGAGG AGC     UCGGG Cgu  c
      |||||          |||||   |||||| |||     ||||| |||  c
      cacgg          uccca   uccucc ucg     ggucc gua  a
agugga     gacucacucc     --c      -   ucucu     g   cc 

>ppy-mir-651 (-31.30)   [ppy-miR-651:16-37]

---------aau  a   c              AG   GA       ucaaa 
            cu uca ugcuuUUUAGGAUA  UUU  CUUUUGu     u
            || ||| ||||||||||||||  |||  |||||||      
            ga agu acggaaaauccuau  gaa  gaaaacg     a
uuuguguaauuu  c   a              gu   ag       uaaaa 

>ppy-mir-652 (-55.20)   [ppy-miR-652:57-77]

---au  cua                  gagag           ca  g 
     gg   ugcacugcacaacccuag     ggugccauuca  ua a
     ||   ||||||||||||||||||     |||||||||||  || c
     cc   acgugacGUGUUGGGAUC     CCGCGGUAAgu  au u
cacau  aac                  ----A           ua  a 

>ppy-mir-653 (-32.82)   [ppy-miR-653:13-33]

-----------u      cuu              U     C     cagcu 
            ucauuc   caGUGUUGAAACAA CUCUA UGaac     u
            ||||||   |||||||||||||| ||||| |||||     c
            aguaag   guuauaacuuuguu gaggu acuug     a
cgaagguagaau      aac              u     c     aacaa 

>ppy-mir-654 (-29.60)   [ppy-miR-654-5p:16-37] [ppy-miR-654-3p:51-72]

    aagugg    a      G C     A      - -  a 
gggu      aaag UGGUGG C GCAGA CAUGUG C ug g
||||      |||| |||||| | ||||| |||||| | ||  
cccg      uUUC ACUACC G CGUCU GUAUac g gc u
    --aaga    C      A U     -      c u  u 

>ppy-mir-655 (-35.10)   [ppy-miR-655:61-82]

aacuauucaag      ug           u      ua      cuuca 
           gauauu  aggagagguua ccgugu  uguucg     u
           ||||||  ||||||||||| ||||||  ||||||      
           cuauaa  uUUUCUCCAAU GGUACA  AUAagu     u
-----cucaga      gu           U      UA      acuac 

>ppy-mir-656 (-23.70)   [ppy-miR-656:43-63]

----------cu    u      c     ag       cuu  u 
            gaaa agguug cugug  guguuca   uc a
            |||| |||||| |||||  |||||||   || u
            cuuU UCCAAC GACAU  UAUAAgu   ag a
cuaagcuauagc    C      U     AU       ---  u 

>ppy-mir-658 (-38.00)   [ppy-miR-658:61-85]

g    ---guu    ugguu  a    --cgg   gc     --agc    ug 
 cucg      gccg     gc ggcc     ccc  ccgcc     ucgc  a
 ||||      ||||     || ||||     |||  |||||     ||||  c
 gagc      uggc     UG CUGG     GGG  GGCGG     agcg  a
g    aagggu    -UGGU  C    AUGAA   -A     gacuc    cg 

>ppy-mir-660 (-33.10)   [ppy-miR-660:16-37]

----------cu    c      -caUAC    U      C    U   gaau 
            gcuc uucucc      CCAU GCAUAU GGAG UGu    u
            |||| ||||||      |||| |||||| |||| |||    c
            cgag gggagg      ggua cgugug ccuc aca    u
gugcuacuguuc    u      acauua    -      u    c   aaac 

>ppy-mir-663b (-50.30)   [ppy-miR-663b:88-109]

-----ugccgagggccauccggcauccuagaugggga         cc    u g      
                                     gccguggga  uccc c ugccu 
                                     |||||||||  |||| | |||| g
                                     cgguacccu  aggg g guggu 
cuuuGGAGUCCGUGCCGGCCCGGUGGuccuuuuguga         --    u -      

>ppy-mir-664 (-24.40)   [ppy-miR-664:49-71]

---gaa    gaaacu    a    aag   u         ac 
      cauu      ggcu ggga   uga uggauagaa  u
      ||||      |||| ||||   ||| |||||||||  a
      guaa      CCGA CCCU   AUU ACUUAUcuu  u
aaaaaa    -aACAU    C    ---   U         au 

>ppy-mir-668 (-33.40)   [ppy-miR-668:44-66]

    a   c   ---        g         aa 
ggua gug gcc   ucggguga caugcacuu  u
|||| ||| |||   |||||||| |||||||||   
cCAU CAC CGG   GGCUCACU GUaugugga  g
    -   C   CUC        -         gu 

>ppy-mir-671 (-68.10)   [ppy-miR-671-5p:29-51] [ppy-miR-671-3p:68-88]

   ggu aa     ----a    a        A   A      GA           -u   g 
gca   g  cuggc     ggcc ggaagagg GGA GCCCUG  GGGGCUGGAGg  gau g
|||   |  |||||     |||| |||||||| ||| ||||||  |||||||||||  |||  
cgu   c  gaccg     ccgg cuuucuCC CCU CGGGAC  UCUUGGCCUcc  uug a
   ggu gg     agaug    g        A   -      --           uu   u 

>ppy-mir-675a (-48.30)   [ppy-miR-675a:10-32]

       u    U    A      CC      gacu 
cccaggg cUGG GCGG GAGGGC  ACAGUG    u
||||||| |||| |||| ||||||  ||||||     
ggguccc gacu cgcc cucccg  ugucgc    g
       c    -    a      ua      agug 

>ppy-mir-675b (-55.30)   [ppy-miR-675b:58-77]

    g  cugc g       u    u    a      cc      gacu 
cgag ca    g cccaggg cugg gcgg gagggc  acagug    u
|||| ||    | ||||||| |||| |||| ||||||  ||||||     
guuc gu    c ggguccc gACU CGCC CUCCCG  UGUCgc    g
    g  ---- g       c    -    A      UA      agug 

>ppy-mir-708 (-44.10)   [ppy-miR-708:11-33]

-aa        A           A     C  GGg  aa   ac 
   cugcccuc AGGAGCUUACA UCUAG UG   gu  aug  u
   |||||||| ||||||||||| ||||| ||   ||  |||  u
   gacgggag ucuucgagugu agauc ac   ca  uac  g
agg        a           c     a  --a  ag   ac 

>ppy-mir-720 (-28.50)   [ppy-miR-720:27-43]

---------------------ccggcucucacccggugguguuaauaUCUUG     GCCUC    a 
                                                    CUGGG     CAga u
                                                    |||||     ||||  
                                                    gaccc     guuu g
gauuauucccugagaauuaaguagaguuucacaccgcaaaagagauuguggg     -----    u 

>ppy-mir-744 (-38.90)   [ppy-miR-744:11-32]

--     c     GC    C   -   U       gucuuacugaagguu 
  uuggg aaggU  GGGG UAG GGC AACAGCA               u
  ||||| |||||  |||| ||| ||| |||||||               c
  ggcuc uucca  cucc auc ccg uugucgu               c
cu     a     -a    a   a   -       acacgcaccaaaggu 

>ppy-mir-758 (-29.40)   [ppy-miR-758:52-73]

-gcc       a    --a    u      aga   c   - uuu 
    uggauac ugag   uggu gaccag   gca acg c   a
    ||||||| ||||   |||| ||||||   ||| ||| |   u
    aucuaug acuc   AUCA CUGGUC   UGU Ugc g   u
cgua       -    CCA    C      CAG   U   c ugu 

>ppy-mir-760 (-41.60)   [ppy-miR-760:49-68]

--g   cg    c    u   ucua        c    acc 
   gcg  ucgc cccc cag    ccagagcc ggau   u
   |||  |||| |||| |||    |||||||| ||||   c
   cgu  agcg GGGG GUC    GGUCUCGG Cuua   a
caa   aa    A    U   --UG        -    aag 

>ppy-mir-765 (-36.20)   [ppy-miR-765:69-89]

uuuag     g    a  ug  --g    guag  agc       ------        caa 
     gggcu auga ag  ga   uuca    ac   ccuuuuc      aagcccua   g
     ||||| |||| ||  ||   ||||    ||   |||||||      ||||||||    
     uccga ugcu uu  cu   aaGU    UG   GGAAGAG      uuugggau   a
--aag     g    c  gu  agg    --AG  GAA       GAGGUc        caa 

>ppy-mir-766 (-50.80)   [ppy-miR-766:65-86]

  a    cag   -cug    u       ag    aau   u     ucuu   uuu 
gc uccu   gac    ggcu ggguggu  gagg   ugg gcugg    uca   u
|| ||||   |||    |||| |||||||  ||||   ||| |||||    |||   g
cg agga   cug    ccga cccacCG  CUCC   ACC CGACC    Agu   g
  -    -ua   uuaa    c       -A    GAC   C     --UC   uua 

>ppy-mir-767 (-44.40)   [ppy-miR-767-5p:27-49] [ppy-miR-767-3p:61-83]

  -uuuu   c  u             U C       UU  C      U    c 
gc     aua ug agguuuuugcuca G ACCAUGG  GU UGAGCA Gcag a
||     ||| || ||||||||||||| | |||||||  || |||||| |||| u
cg     ugu ac uccaaggacgagU U UGGUACC  CA ACUCGU Uguu g
  ucauc   u  u             C U       -C  U      C    c 

>ppy-mir-770 (-56.70)   [ppy-miR-770-5p:20-42]

      -c     cc   c              GUCA     A      cu 
aggagc  accuu  gag cUCCAGUACCACGU    GGGCC caugag  g
||||||  |||||  ||| ||||||||||||||    ||||| ||||||   
uucucg  ugggg  cuc ggggucguggugua    uccgg gugcuc  g
      uc     -a   c              ---g     -      cg 

>ppy-mir-802 (-35.10)   [ppy-miR-802:18-40]

---guu      u     g C   A          A      -   cc 
      cuguua uugca u AGU ACAAAGAUUC UCCUUG Ugu  a
      |||||| ||||| | ||| |||||||||| |||||| |||  u
      gauaau aaugu a uca uguuucuaag aggaac acg  c
cagguc      u     g u   c          -      g   ca 

>ppy-mir-873 (-31.10)   [ppy-miR-873:11-31]

--   u ca   G A      UG G        a  ga 
  gug g  uuu C GGAACU  U AGUCUCCU uu  a
  ||| |  ||| | ||||||  | |||||||| ||  a
  cac c  aag g ccuuga  a ucagagga aa  a
aa   c ac   g c      gu g        c  gu 

>ppy-mir-874 (-37.20)   [ppy-miR-874:47-68]

--      cug   c   a  ca        a   -a a 
  uuagcc   cgg ccc cg  ccagggua gag  g c
  ||||||   ||| ||| ||  |||||||| |||  | u
  ggucgg   GCC GGG GC  GGUCCCGU cuu  c c
cg      ucA   A   A  CC        C   cg u 

>ppy-mir-875 (-32.20)   [ppy-miR-875-5p:11-32] [ppy-miR-875-3p:45-65]

--      gu  UAU        U  A       uucu 
  uuagug  ac   ACCUCAGU UU UCAGGUG    u
  ||||||  ||   |||||||| || |||||||     
  agucac  uG   UGGAGUCA AA GGUCCac    a
ca      uc  UGU        U  A       uaaa 

>ppy-mir-876 (-42.70)   [ppy-miR-876-5p:11-32] [ppy-miR-876-3p:50-71]

u    ug         U                aucuaa  u 
 gaag  cugUGGAUU CUUUGUGAAUCACCAu      gc a
 ||||  ||||||||| ||||||||||||||||      ||  
 cuuc  gauACUUAA GAAACAUUUGGUGGUg      ug a
a    gu         U                -----g  u 

>ppy-mir-877 (-37.50)   [ppy-miR-877:1-20]

-GUA      AU  C C          ggcaaaga  c       c 
    GAGGAG  GG G AGGGgacacg        cu ggggguu c
    ||||||  || | ||||||||||        || ||||||| u
    cuccuc  cc c ucuccugugu        ga cucccag g
gacc      --  u u          -----aca  -       g 

>ppy-mir-885 (-44.50)   [ppy-miR-885-5p:11-32] [ppy-miR-885-3p:43-64]

--   ca    c           A  -         cu 
  ccg  cucu UCCAUUACACU CC CUGCCUCUu  c
  |||  |||| ||||||||||| || |||||||||   
  ggc  gagA AGGUGAUGUGG GG GACGGAgag  c
ug   ac    U           -  C         ua 

>ppy-mir-886 (-35.10)   [ppy-miR-886-5p:11-33] [ppy-miR-886-3p:90-110]

cacuccuaccC       AGUU   U AA    -  a -cu     u  - ------    uuu 
           GGGUCGG    AGC C  GCGG uu c   ccuca gc c      ggac   c
           |||||||    ||| |  |||| || |   ||||| || |      ||||   u
           CCCAGUC    UCG G  CGCc ag g   ggggu cg g      ccug   a
----guauuUU       --AU   U GG    c  a cuu     -  u ucucua    ucu 

>ppy-mir-887 (-40.90)   [ppy-miR-887:48-69]

--       u        --  -      ag    ug auu 
  gugcaga ccuuggga  gc ccuguu  acuc  g   u
  ||||||| ||||||||  || ||||||  ||||  |   u
  cacguuu GGAGCCCU  CG GGGCAA  UGag  u   a
ga       c        AC  C      -G    gu cac 

>ppy-mir-888 (-27.80)   [ppy-miR-888:11-31]

--   ag g  c        A  C   G      uuag 
  ggc  u cu UACUCAAA AG UGU AGUCAc    a
  |||  | || |||||||| || ||| ||||||    u
  ucg  a ga guggguuu uc aca ucagug    u
ac   ga g  a        c  c   g      uaca 

>ppy-mir-889 (-24.40)   [ppy-miR-889:49-69]

--     u   g     c      uagua     -  uau 
  gugcu aaa aaugg uguccg     ugguc uc   a
  ||||| ||| ||||| ||||||     ||||| ||   u
  uauga uuU UUACC ACAGGC     AUUag ag   u
cc     u   G     A      -UAUA     u  uau 

>ppy-mir-890 (-26.50)   [ppy-miR-890:11-31]

--  aag   c     UG      C UC      uuaa 
  gg   ugc cUACU  GAAAGG A  AGUUGc    a
  ||   ||| |||||  |||||| |  ||||||    u
  uc   aug gauga  cuuucc u  ucaaug    u
au  gaa   a     gu      c ua      uaca 

>ppy-mir-891a (-32.92)   [ppy-miR-891a:11-32]

c   --a     UG        C  A        uucag 
 cuu   auccu  CAACGAAC UG GCCAUUGA     u
 |||   |||||  |||||||| || ||||||||     a
 gaa   uggga  guuguuug ac cggugacu     a
a   aac     gu        u  a        cauaa 

>ppy-mir-891b (-24.02)   [ppy-miR-891b:11-32]

c   --a     U     UU  C  A        uucag 
 cuu   auccu GCAAC  AC UG GUCAUUGA     u
 |||   ||||| |||||  || || ||||||||     a
 gaa   uggga uguug  ug ac cgguaacu     a
a   aac     u     uu  u  a        uacaa 

>ppy-mir-892a (-23.10)   [ppy-miR-892a:44-64]

cagu   -----    u        u  -    c  uuac 
    gcc     cuac uagaaagg gc cagu ac    a
    |||     |||| |||||||| || |||| ||    c
    cgg     GAUG GUCUUUCC UG GUCA ug    u
--cu   aauga    U        -  U    C  uaca 

>ppy-mir-892b (-36.00)   [ppy-miR-892b:46-67]

--u  ag   c             u    u u     g 
   gc  ugc cuacucagaaagg gcca u augua a
   ||  ||| ||||||||||||| |||| | ||||| u
   cg  aug GAUGGGUCUUUCC CGGU A uguau u
acu  ga   A             U    C C     a 

>ppy-mir-920 (-24.40)   [ppy-miR-920:49-68]

---  ag     -     aaga      -    gagga 
   gu  uuguu cuacg    ccugga ugug     g
   ||  ||||| |||||    |||||| ||||      
   ca  GACAA GGUGU    GGAccu acac     c
gca  AU     A     CGAG      c    agaau 

>ppy-mir-921 (-22.00)   [ppy-miR-921:2-26]

a       GGGACCGAA     A    --   c 
 CUAGUGA         CCAGG CUCa  gac c
 |||||||         ||||| ||||  |||  
 ggucacu         ggucc gggu  cug a
-       --------a     -    ac   g 

>ppy-mir-922 (-31.70)   [ppy-miR-922:57-79]

       uu    --    -c    ----   ggac      cag 
auggcgu  uccc  ucuc  cugu    ccu    uggggu   a
|||||||  ||||  ||||  ||||    |||    ||||||    
uaCUGCA  AGGG  AGAG  GACG    gga    gccccg   c
       UC    UA    AC    aaga   ----      ugu 

>ppy-mir-924 (-12.30)   [ppy-miR-924:4-23]

aa    G   ----  U    -    G 
  uAGA UCU    UG GAUG UCUU C
  |||| |||    || |||| |||| u
  aucu aga    ac cuac ggga u
ac    g   ucca  -    c    a 

>ppy-mir-933 (-29.60)   [ppy-miR-933:48-69]

   -     caguuc       -   ggg  u     u  a u 
acu ugggu      agagguc cuc   gu gcgcg cg g c
||| |||||      ||||||| |||   || ||||| || |  
uga accca      UCUCCAG GGG   CG CGUGU gc c a
   c     ---CCC       A   --A  -     -  - g 

>ppy-mir-934 (-46.80)   [ppy-miR-934:15-36]

         c          C          A    uagu 
agaaauaag cuucUGUCUA UACUGGAGAC CUGG    a
||||||||| |||||||||| |||||||||| ||||    u
ucuuuauuc gagggcaggu augaccucug gacc    a
         c          a          a    caaa 

>ppy-mir-936 (-29.90)   [ppy-miR-936:15-36]

ucaa    -  u     --AA     -     AAUCACAGaaaucacucc 
    ggcc gc gggAC    UAGAG GGAGG                  a
    |||| || |||||    ||||| |||||                  g
    ccgg cg uccug    auuuc ucuuc                  g
agac    u  -     gacc     a     auuccagagagucaacga 

>ppy-mir-937 (-37.20)   [ppy-miR-937:51-72]

   -a    ccc   ----u           g  -cu   c ccu 
agc  cugc   cgg     gagucagggug gg   ggc c   g
|||  ||||   |||     ||||||||||| ||   ||| |    
ucg  gacg   gcC     CUCAGUCUCGC CC   ccg g   c
   ag    ucc   CGUCU           G  UUc   u cuu 

>ppy-mir-938 (-39.70)   [ppy-miR-938:15-36]

            u  GCC          A   - A  g  cc 
gaagguguacca gU   CUUAAAGGUG ACC C GU ca  u
|||||||||||| ||   |||||||||| ||| | || ||   
cuuccgcauggu ca   gaauuuccac ugg g ca gu  u
            u  --a          a   u c  a  ac 

>ppy-mir-939 (-52.80)   [ppy-miR-939:13-36]

u    -    gu         U       UG     -   c 
 gugg cagg  cUGGGGAGC GAGGCUC  GGAGU Ggc g
 |||| ||||  ||||||||| |||||||  ||||| |||  
 cgcc gucu  gaccccucg cuccggg  ucuca ucg g
g    a    gu         u       --     g   a 

>ppy-mir-942 (-51.64)   [ppy-miR-942:13-34]

            C                   G   uacuca 
auuaggagagua CUUCUCUGUUUUGGCCAUG Gug      c
|||||||||||| ||||||||||||||||||| |||       
uaauccuuucau gaagagacaaagccgguac cac      a
            u                   a   uccccg 

>ppy-mir-943 (-43.20)   [ppy-miR-943:57-77]

gggacguucugggcucaga    g         uuu  --      cu  u 
                   gggg ugggggacg   gc  cgguca  gc g
                   |||| |||||||||   ||  ||||||  || c
                   cccc ACCUCCUGU   CG  GUCAGU  cg u
----cccuacggaaacuca    G         ---  UU      Cc  g 

>ppy-mir-944 (-46.30)   [ppy-miR-944:54-75]

            u          c       u      aaauu 
guuccagacaca cucaucugau uacaaua uuucuu     g
|||||||||||| |||||||||| ||||||| ||||||      
uagggucugugu GAGUAGACUA AUGUUAU AAAgag     u
            c          C       U      aaaua 

>ppy-mir-1178 (-35.70)   [ppy-miR-1178:54-74]

--    g      gagga       gg ccg    c g     ca 
  guug cuggca     agggaag  u   gggu g cugag  u
  |||| ||||||     |||||||  |   |||| | |||||   
  uagu gacugu     UCCCUUC  G   CUCG U gacuc  g
ug    g      -aaGA       UU UCA    U g     cc 

>ppy-mir-1179 (-29.40)   [ppy-miR-1179:15-35]

      -----      a   --         C     C  Gu ugua 
ggcugg     aaagga gAA  GCAUUCUUU AUUGG UG  g    u
||||||     |||||| |||  ||||||||| ||||| ||  |     
ucgauc     uuuccu uuu  cguaggaga uaacc ac  u    u
      agucu      a   ac         a     a  ug uccg 

>ppy-mir-1180 (-39.00)   [ppy-miR-1180:41-62]

        ---      c  -          gu  u 
gcugcugg   acccac cg gccgggaaua  gc c
||||||||   |||||| || ||||||||||  || c
cggcggcU   UGGGUG GC CGGCCUUUgu  ug u
        GUG      C  U          --  g 

>ppy-mir-1181 (-39.60)   [ppy-miR-1181:14-34]

u    -     ----    G   --   ---  CA   G    Gg 
 ccac cgcug    ccgC GUC  GCC   GC  CCC AGCC  a
 |||| |||||    |||| |||  |||   ||  ||| ||||   
 ggug gcgac    ggug uag  cgg   cg  ggg ucgg  g
g    u     auca    g   aa   aac  cc   -    gc 

>ppy-mir-1183 (-19.80)   [ppy-miR-1183:48-74]

au     aaa     g a -a   agaa     ga aag    ga 
  uauuc   ugcuc g g  cac    cauua  g   auag  g
  |||||   ||||| | |  |||    |||||  |   ||||  u
  guaag   acgag u C  GUG    GUGGU  U   UGUC  u
cc     --g     g A GG   -AGA     AG GGA    AC 

>ppy-mir-1185-1 (-35.00)   [ppy-miR-1185:15-35]

u       u    -     GA A              a  uga 
 uugguac ugaa gAGAG  U CCCUUUGUAUGUUc cu   u
 ||||||| |||| |||||  | |||||||||||||| ||    
 aacuaug guuu uucuc  a gggggacauauaag gg   u
a       c    a     ag -              c  uaa 

>ppy-mir-1185-2 (-35.90)   [ppy-miR-1185:15-35]

u       u    -     GA A              a  uga 
 uugguac uaaa gAGAG  U CCCUUUGUAUGUUc cu   u
 ||||||| |||| |||||  | |||||||||||||| ||    
 aacuaug guuu uucuc  a gggggacauauaag gg   u
a       c    a     ag -              c  uaa 

>ppy-mir-1197 (-26.40)   [ppy-miR-1197:57-77]

acuuccu      -u     ugc   u       gug g    - uuu 
       gguauu  gaaga   ggu gaccaug   u uacg c   a
       ||||||  |||||   ||| |||||||   | |||| |   u
       cuauaa  cuUCU   UCA CUGGUAC   G AUgc g   u
------a      cu     ---   U       ACA G    a uau 

>ppy-mir-1200 (-26.40)   [ppy-miR-1200:9-30]

u    cu  U     -GCCA         UC    a   g 
 gcua  uC CCUGA     UUCUGAGCC  aauc cuu c
 ||||  || |||||     |||||||||  |||| |||  
 cgau  ag ggacu     aggacuugg  uuag gag c
c    --  -     guuua         --    a   a 

>ppy-mir-1201 (-19.21)   [ppy-miR-1201:52-75]

uuuac       -  u  ugaaau      uaagucc  -guu    -  g 
     aguuugc ca ga      gcaugu       gu    ucag cu a
     ||||||| || ||      ||||||       ||    |||| ||  
     ucagacg GU CU      CGUACA       CA    AGUC GA u
----a       A  -  ------      -------  AAUU    C  c 

>ppy-mir-1202 (-31.90)   [ppy-miR-1202:13-33]

    cug aga  UG  A    - --  UG   GA  cacu  c 
ccug   c   gG  CC GCUG C  AG  GGG  Gg    gc a
||||   |   ||  || |||| |  ||  |||  ||    ||  
ggac   g   cc  gg cgac g  uc  cuc  cc    cg g
    -aa -ag  gu  a    c au  gu   ac  --au  g 

>ppy-mir-1204 (-22.20)   [ppy-miR-1204:4-24]

accU  U   CUG   UC    A  ug     a 
    CG GGC   GUC  CAUU Uu  agaug g
    || |||   |||  |||| ||  ||||| u
    gc ccg   cag  gugg ag  ucuac u
--gu  u   -ug   ga    -  gu     a 

>ppy-mir-1205 (-23.90)   [ppy-miR-1205:8-27]

ga    cU --U        U  UUU    u 
  aggc  C   GCAGGGUU GC   GAGg a
  ||||  |   |||||||| ||   |||| c
  ucug  g   ugucccaa ug   uucc u
ug    ag ucu        c  ucc    u 

>ppy-mir-1207 (-41.50)   [ppy-miR-1207-5p:8-28] [ppy-miR-1207-3p:52-69]

     ---    GCAGG    CAGG     G ug     -    gg 
gcagg   gcUG     GAGG    GAGGG c  gcugg gccu  u
|||||   ||||     ||||    ||||| |  ||||| ||||   
ugucc   cgac     uuCU    CUCCC G  CGACU cggg  a
     uca    -agaa    -UUA     - GU     a    ug 

>ppy-mir-1208 (-25.70)   [ppy-miR-1208:12-31]

-     g   -aaUC   GU     CA    -    cg 
 caccg cag     ACU  UCAGA  GGCG GAga  g
 ||||| |||     |||  |||||  |||| ||||   
 guggu guc     uga  agucu  ccgc cuuu  g
g     -   accac   gu     -a    u    cu 

>ppy-mir-1224 (-46.20)   [ppy-miR-1224-5p:1-19] [ppy-miR-1224-3p:65-85]

G      CUC         a   --u    cc  c     c g 
 UGAGGA   GGGAGGUGG ggg   ggcg  gc ggggc g g
 ||||||   ||||||||| |||   ||||  || ||||| |  
 ACUCCU   UCCUCCACC Ccc   ucgc  cg cucug c c
G      CUC         C   ucu    -u  a     u g 

>ppy-mir-1225 (-48.20)   [ppy-miR-1225-5p:1-22] [ppy-miR-1225-3p:69-90]

G    UA    C   U   ---  Gg  -ag  aca            
 UGGG  CGGC CAG GGG   GG  ag   gg   cgcccugggcu 
 ||||  |||| ||| |||   ||  ||   ||   |||||||||| c
 ACCC  GCCG GUC CCC   Uc  uc   cc   gugggacccgu 
G    CC    U   -   GAG  ag  agg  gac            

>ppy-mir-1226 (-36.90)   [ppy-miR-1226:54-75]

gug    c       c    a      a   ----g  a 
   aggg augcagg cugg uggggc gcu     gg u
   |||| ||||||| |||| |||||| |||     || g
   UCCC UGUGUCC GACC ACUccg ugg     cc g
-GA    U       C    -      g   gaaaa  u 

>ppy-mir-1227 (-38.10)   [ppy-miR-1227:69-88]

guggggccaggcaguggugggcacugcug      g  ------   ca   a     
                             gggugg ca      cag  gcc ugca 
                             |||||| ||      |||  ||| ||| g
                             CCCACC GU      guc  cgg acga 
-------------------GACCCCUUUU      -  ACacca   ua   -     

>ppy-mir-1228 (-34.50)   [ppy-miR-1228:52-71]

g    --ca         au    u    ggugg    ag 
 uggg    ggggcaggu  gugg gggu     ccug  g
 ||||    |||||||||  |||| ||||     ||||  u
 aCCC    CUCCGUCCA  CACU cccg     ggac  g
g    CCCA         --    -    -----    ga 

>ppy-mir-1233 (-40.40)   [ppy-miR-1233:63-82]

guga       acc     acggcagggggagcugcagggc 
    gugggag   agggc                      u
    |||||||   |||||                       
    CGCCCUC   UCCCG                      g
--GA       CUU     AGUcugcgaccccggggagggu 

>ppy-mir-1236 (-39.40)   [ppy-miR-1236:81-102]

-- u   u    -      au    auggacuggaagugggcagcauggagcu 
  g gag gaca ggggaa  gggg                            g
  | ||| |||| ||||||  ||||                             
  C CUC CUGU CCCCUU  CUCC                            a
GA -   U    U      --    guaauacaaccgguucgguacugcuucc 

>ppy-mir-1237 (-52.10)   [ppy-miR-1237:82-102]

gug       cca  c          gugggg  g  aga     --gu   gg 
   ggggggc   gg gcgggaaggg      gu gc   gcgcu    ccc  g
   |||||||   || ||||||||||      || ||   |||||    |||  g
   CCCCCUG   CC CGUCUUUCUc      ca cg   cgcga    ggg  g
-GA       ---  U          -aauga  g  --g     aguc   ac 

>ppy-mir-1238 (-36.10)   [ppy-miR-1238:61-80]

gugagugggagccccaguguguguuggggcugu          cagcc    cu 
                                 gacggguggg     aggc  c
                                 ||||||||||     ||||   
                                 CUGUCUACUC     UCcg  u
-------------------------gaCCCCGU          ---CC    ag 

>ppy-mir-1244 (-16.70)   [ppy-miR-1244:55-80]

---------       uccga   uu    ua   uuuuug    u    uu 
         aucuuau     gca  ccag  acu      ugua guac  a
         |||||||     |||  ||||  |||      |||| ||||   
         UAGAGUA     UGU  GGUU  UGA      Auau caug  g
aaaaaUUGG       -----   UU    GA   ------    -    uc 

>ppy-mir-1245 (-31.80)   [ppy-miR-1245:46-66]

a       a              - -aucu   guu 
 uuuaugu uaggccuuuagauc c     gag   g
 ||||||| |||||||||||||| |     |||    
 aaauaCA AUCCGGAAAUCUAG G     cuc   a
-       C              U AAuuu   aua 

>ppy-mir-1246 (-16.61)   [ppy-miR-1246:11-29]

--   aua   gA       -------     AG    a u 
  ugu   cuu  AUGGGUU       UUUGG  CAGG g g
  |||   |||  |||||||       |||||  |||| |  
  acg   gga  uaccuaa       aaacc  gucc c g
ua   auc   --       cuaaagg     ca    a a 

>ppy-mir-1247 (-57.70)   [ppy-miR-1247:40-61]

c    u  -    ---c  a   c  cccc   -  --c       A  C   C  UU   C     Ac  ugc 
 cgcu gc cucg    cc gcg ag    ggc cg   ugggcgc CC GUC CG  CGU CCCGG  gu   u
 |||| || ||||    || ||| ||    ||| ||   ||||||| || ||| ||  ||| |||||  ||    
 gcgg cg gagc    gg cgc uc    ccg gu   gcccgcg gg cag gc  gca gggcc  ca   c
-    -  a    ccca  -   u  --ca   a  caa       a  u   a  -u   a     -c  ucu 

>ppy-mir-1248 (-34.50)   [ppy-miR-1248:4-30]

--------uuuAC        AUAA C   G     ---AA        c          
             CUUCUUGU    G ACU UGCUA     auugcaga acuaggacc 
             ||||||||    | ||| |||||     |||||||| |||||||| a
             gaagaaca    c uga acgau     uaacguuu ugguucugu 
acgacaaugaaaa        --ca a   g     cguaa        u          

>ppy-mir-1249 (-32.70)   [ppy-miR-1249:41-62]

----g         a  a  u    caa     cuc 
     ggaggaggg gg ga gggc   guucc   u
     ||||||||| || || ||||   |||||    
     CUUCUUCCC CC CU CCCG   CAagg   g
guccA         -  C  U    ---     ucg 

>ppy-mir-1250 (-54.00)   [ppy-miR-1250:24-44]

--   uc     ------   -    -ca     -C  U      ---          uugc 
  cug  ccgcu      ggc cugg   ggugA  GG GCUGGA   UGUGGCCUUU    c
  |||  |||||      ||| ||||   |||||  || ||||||   ||||||||||    u
  gac  ggugg      ccg gacc   ccacu  cc cgaccu   acaccggaaa    u
cg   cc     agucuc   a    uuc     ua  -      uuu          ccuu 

>ppy-mir-1251 (-22.00)   [ppy-miR-1251:5-25]

-----  gg  U  A    CCA         --c  c 
     gu  AC CU GCUG   AAGGCGCUu   uc u
     ||  || || ||||   |||||||||   || u
     ca  ug ga cgac   uuucgcgag   ag c
cggua  ga  u  c    ucg         aca  u 

>ppy-mir-1252 (-22.70)   [ppy-miR-1252:5-26]

                 A       A   aa 
agaaAGAAGGAAGUUGA UUCAUUU gaa  g
||||||||||||||||| ||||||| |||  a
ucuuuuuuucuuuaauu gaguaaa cuu  g
                 c       c   aa 

>ppy-mir-1253 (-57.10)   [ppy-miR-1253:24-44]

-agcagcaagagguaaa    a                       gaug   a 
                 aucc aaAGAGGAGAAGAUCAGCCUGCA    ugg c
                 |||| |||||||||||||||||||||||    |||  
                 uagg uuucuccucuucuagucggacgu    auc u
accggagaguauucucu    g                       --aa   g 

>ppy-mir-1254 (-38.80)   [ppy-miR-1254:18-41]

ggu  g      ---gc   -A      AA       CC       -a  ua 
   gg aggauu     uug  GUCUGG  GCUGGAG  UGCAGUg  ac  u
   || ||||||     |||  ||||||  |||||||  |||||||  ||  c
   cu uccuaa     aac  cggauc  cgaccuc  acgucac  ug  a
-au  g      aguaa   aa      --       --       cg  uu 

>ppy-mir-1255a (-55.70)   [ppy-miR-1255a:28-50]

--au    aauccuuu                            ---  A          
    ugga        gaguugcuucucaAGGAUGAGCAAAGAA   AG UUUUUuaga 
    ||||        ||||||||||||||||||||||||||||   || |||||||| u
    accu        cucaacgaagaguuccuacucguuucuu   uc aagaggucu 
aauu    ----auuc                            cua  a          

>ppy-mir-1255b-1 (-11.60)   [ppy-miR-1255b:1-21]

GGAUGAGCAAAGAAA UG  U    -    u   au 
               G  GU ucuu gcaa gga  c
               |  || |||| |||| |||   
               u  cg agaa uguu ccu  u
------------aag gu  u    g    -   ca 

>ppy-mir-1255b-2 (-40.60)   [ppy-miR-1255b:7-27]

-     c                      g gc 
 ucuua GGAUGAGCAAAGAAAGUGGUUu c  c
 ||||| |||||||||||||||||||||| |  u
 ggaau ccuacucguuucuuucaccgaa g  c
a     a                      - aa 

>ppy-mir-1256 (-52.62)   [ppy-miR-1256:35-56]

------     gc          uuugaagcuuu    c  G             A       u a 
      aguca  cuguugaagc           gaug cA GCAUUGACUUCUC CUAGCUa g a
      |||||  ||||||||||           |||| || ||||||||||||| ||||||| | a
      ucggu  gauaacuuug           cuac gu uguaacugaagag gaucgau c g
acuuug     -a          ---------uu    a  a             a       c u 

>ppy-mir-1257 (-42.30)   [ppy-miR-1257:22-42]

--  c u    --u    ---cu     A     U      UU --   CCc   ugc 
  gc c gggc   ugug     caggg GUGAA GAUGGG  C  UGA   cca   a
  || | ||||   ||||     ||||| ||||| ||||||  |  |||   |||    
  cg g cccg   acac     guccc cacuu cuaccc  g  acu   ggu   c
uc  u u    uuc    caacc     c     c      cg uc   -ac   ccc 

>ppy-mir-1260 (-17.34)   [ppy-miR-1260:12-29]

cuuuccagcucAUCCCA      -  A  Aaaaca 
                 CCUCUG CC CC      c
                 |||||| || ||       
                 ggagac gg gg      u
aauggaaaaaccgugag      u  -  cacucu 

>ppy-mir-1261 (-30.20)   [ppy-miR-1261:5-23]

--         U    C  UG C    gg     uu ug u 
  ugcuGUGGA AAGG UU  G UUau  ggaua  g  g u
  ||||||||| |||| ||  | ||||  |||||  |  | g
  acgauaccu uuuc aa  c agua  ccuau  u  c a
cg         c    a  gu -    ga     cu gu u 

>ppy-mir-1262 (-22.21)   [ppy-miR-1262:14-35]

--   u     ---g  aAU    G  -------   G         gaaag 
  auc acaau    gu   GGGU AA       UUU UAGAAGGAU     u
  ||| |||||    ||   |||| ||       ||| |||||||||      
  uag uguua    ca   uccg uu       aag gucuuccua     c
ua   -     agaa  acu    g  uucaauc   g         agaaa 

>ppy-mir-1263 (-49.50)   [ppy-miR-1263:13-34]

                   CC   C           u  aa 
cuaccccaaaauAUGGUAC  UGG AUACUGAGUau uu  u
|||||||||||||||||||  ||| ||||||||||| ||   
gaugggguuuuauaccgug  acc uaugacucaua gg  a
                   au   a           c  gc 

>ppy-mir-1264 (-19.16)   [ppy-miR-1264:42-64]

--------    c     -    u        aaagaa 
        aggu cucaa uaag auuuguug      u
        |||| ||||| |||| ||||||||      a
        UCCA GAGUU AUUC UGAACaac      a
guguaUUG    C     U    -        caaaua 

>ppy-mir-1265 (-50.30)   [ppy-miR-1265:14-35]

--           c                     C  ag ca 
  augguuuggga uCAGGAUGUGGUCAAGUGUUG Ua  g  u
  ||||||||||| ||||||||||||||||||||| ||  |   
  uaccaaacccu aguuuuacaccaguucauaac gu  c  g
ua           a                     a  ga uu 

>ppy-mir-1266 (-55.70)   [ppy-miR-1266:13-35]

--   --gg                U             ggau 
  aca    uagugucCCUCAGGGC GUAGAACAGGGUU    u
  |||    |||||||||||||||| |||||||||||||     
  ugu    gucacagggagucccg uaucuugucccga    a
ac   acga                -             aauc 

>ppy-mir-1267 (-33.84)   [ppy-miR-1267:12-32]

----cuc         C               A  Accucc 
       ccaaaucuU UGUUGAAAUGUAAUC CC      a
       ||||||||| ||||||||||||||| ||       
       gguuuagag acaacuuuacauuag gg      g
aggaaua         u               -  acaaac 

>ppy-mir-1268 (-20.40)   [ppy-miR-1268:5-22]

--     GGGCGU     -    C     
  uagcC      GGUGG UGGG Gccu 
  |||||      ||||| |||| ||| g
  gucgg      ucauc accc uggu 
ga     -agggu     g    -     

>ppy-mir-1269 (-63.50)   [ppy-miR-1269:65-86]

gauu  -cu   a             u               aagucugacga 
    gc   aga cagggaagccagu ggcguggcucagucc           c
    ||   ||| ||||||||||||| |||||||||||||||           c
    cg   ucu gucccuucGGUCA UCGUACCGAGUCAGG           u
----  acc   g             -               UCcguaaggag 

>ppy-mir-1270 (-26.40)   [ppy-miR-1270:13-35]

ca   --u      CU      C        -    --G   g 
  caa   guuaua  GGAGAG AGGAAGAG CUGU   Uug g
  |||   ||||||  |||||| |||||||| ||||   |||  
  guu   cggugu  cuucuu uucuuuuc gaca   aac u
ac   ucu      au      u        a    aug   a 

>ppy-mir-1271 (-50.40)   [ppy-miR-1271:15-36]

-ca  -   au             C     A           a 
   cc cag  cagugCUUGGCAC UAGCA GCACUCAguaa u
   || |||  ||||||||||||| ||||| |||||||||||  
   gg guc  guuacggaccgug aucgu cgugaguuguu a
ucg  a   gu             u     c           c 

>ppy-mir-1273 (-48.80)   [ppy-miR-1273:76-101]

-u    c     aa      --ga       agg     gu       a  caa 
  gagg aggag  uugcuu    acccggg   uggag  ugcagug gc   g
  |||| |||||  ||||||    |||||||   |||||  ||||||| ||   a
  UUCU UUCUC  AACGAG    UGGGucc   accuc  acgucac cg   u
gg    U     AG      ACAG       --g     --       -  cac 

>ppy-mir-1274a (-22.80)   [ppy-miR-1274a:14-31]

--    ucccuguuu   CCUGU       CC         u 
  gaug         GUC     UCAGGUG  Acuuguggc g
  ||||         |||     |||||||  ||||||||| u
  cuac         cag     aguuuau  ugaacaccg g
ca    ---------   -----       ca         u 

>ppy-mir-1274b (-28.50)   [ppy-miR-1274b:14-30]

---       c   c     U UU G    -   a 
   uucuuca uca gUCCC G  C GGCA CCA u
   ||||||| ||| ||||| |  | |||| |||  
   aagaagu agu caggg c  g cugu ggu u
agg       a   -     - uu g    c   g 

>ppy-mir-1275 (-29.60)   [ppy-miR-1275:18-34]

--        aggaaggguG         GGCU  C      cug 
  ccucuguu          UGGGGGAGA    GU uugugu   u
  ||||||||          |||||||||    || ||||||    
  ggagacgg          accccuucu    ca aacgua   a
ag        ---------a         -auu  a      uaa 

>ppy-mir-1277 (-34.60)   [ppy-miR-1277:47-68]

--   uc     u            g        ug au 
  acc  ccaaa auauauauauau uacguaug  u  a
  |||  ||||| |||||||||||| ||||||||  |   
  ugg  gguUU UAUGUAUAUAUA AUGCAUau  a  u
uu   gu     U            G        gu aa 

>ppy-mir-1280 (-47.30)   [ppy-miR-1280:5-21]

--uc         G U    CCC   cc        a   u cc  -  a 
    ugUCCCACC C GCCA   ucc  ucugccuc gug g  ag gc u
    ||||||||| | ||||   |||  |||||||| ||| |  || ||  
    acagggugg g cggu   agg  ggacggag cac c  uc cg c
gaca         - -    ---   uc        a   u ac  a  a 

>ppy-mir-1281 (-32.50)   [ppy-miR-1281:33-49]

-      cacc            gugu 
 aggggg    gggaggagguga    c
 ||||||    ||||||||||||     
 ucccCC    UCCUCCUCCGCU    u
u      -CUC            guuc 

>ppy-mir-1282 (-39.40)   [ppy-miR-1282:9-28]

ccuucu   CG          UC       ----   g   g     cgag   c 
      ucU  UUUGCCUUUU  UGCUUcu    gcu cau aucuc    ucc u
      |||  ||||||||||  |||||||    ||| ||| |||||    |||  
      agg  aaacgggaga  auggagg    cgg gua uagag    ggg a
-----c   aa          cc       guca   g   g     --au   g 

>ppy-mir-1283a (-44.00)   [ppy-miR-1283a:14-35]

--    u           AC     A           g  guc 
  cuca gcugugacUCU  AAAGG AAGCGCUUUCU uu   a
  |||| |||||||||||  ||||| ||||||||||| ||   g
  gagu uggcauuggga  uuucc uucgcgaaaga aa   a
aa    u           gu     c           g  gua 

>ppy-mir-1283b (-47.70)   [ppy-miR-1283b:14-35]

--    u        U  G           C      guug  u 
  cuca gcugugac CU CAAAGGGAAGC CUUUCU    uc a
  |||| |||||||| || ||||||||||| ||||||    || a
  gagu uggcauug ga guuucccuucg gaaaga    ag a
aa    u        u  g           c      --aa  a 

>ppy-mir-1284 (-34.99)   [ppy-miR-1284:30-51]

---a   ug    ---au        uuaau      U        CCU        uuaaauu 
    uuu  auau     aagcuagu     guuuUC AUACAGAC   GGCUUUUC       u
    |||  ||||     ||||||||     |||||| ||||||||   ||||||||        
    aaa  uaua     uuuggucg     caaagg uauguuug   ccgaaagg       u
ucua   gu    cuuuc        ----u      u        uac        uuauaua 

>ppy-mir-1285a (-52.30)   [ppy-miR-1285a:51-72]

--                      a     c    ug ucuc 
  uguagagauagggucucacuuu uugcc aggc  g    a
  |||||||||||||||||||||| ||||| ||||  |     
  acaucucuauUCCAGAGUGAAA AACGG UCUg  c    a
ga                      C     A    gu cuca 

>ppy-mir-1285b (-25.10)   [ppy-miR-1285b:52-73]

uuugggaggccgaggcuggugca      --ga      caau   a 
                       ucgcuu    gccuag    uug g
                       ||||||    ||||||    |||  
                       AGUGAA    CGGGUC    aac a
---agaaacaucucuaccUCCAG      ACAA      ---U   c 

>ppy-mir-1286 (-32.30)   [ppy-miR-1286:46-66]

-g   u ug   a    g    c   g  u     au 
  ucc c  ggg cuca cuug ucu gc gcugg  u
  ||| |  ||| |||| |||| ||| || |||||   
  agg g  UCC GAGU GAAC AGG CG cgauu  g
ag   u gu   C    A    C   A  U     aa 

>ppy-mir-1287 (-28.90)   [ppy-miR-1287:16-37]

--  ug  cug     gU  U G   A      U    Cu a  cuc 
  gu  ug   uccag  GC G AUC GUGGUU GAGU  g gc   u
  ||  ||   |||||  || | ||| |||||| ||||  | ||    
  ca  ac   agguu  ug c uag caccga cuca  c cg   a
aa  gu  -cg     ag  u g   a      u    -- -  aaa 

>ppy-mir-1289-1 (-57.39)   [ppy-miR-1289:86-108]

---uucuuaauuuuuaguaggaauuaaaaacaaaa   gu         c                 agagaau 
                                   cug  aaaugcaga ucuuggauuccaccccc       c
                                   |||  ||||||||| |||||||||||||||||        
                                   gaU  UUUACGUCU AGGACCUGAGGUggggg       c
acaaggguuacauagucuuagugggacccaugaaa   --         A                 ccaaaug 

>ppy-mir-1290 (-23.80)   [ppy-miR-1290:53-71]

--       gug    cac       gu      u      g 
  gagcguc   uuga   ucaaaaa  uucaga uuugga c
  |||||||   ||||   |||||||  |||||| ||||||  
  cucguAG   GACU   GGUUUUU  AGGUuu aggcuu a
aa       --A    --A       --      u      u 

>ppy-mir-1291 (-38.70)   [ppy-miR-1291:14-37]

--  u   -au   -agU    -   A  GA           ug   
  gg aga   ucc    GGCC CUG CU  AGACCAGCAGU  ua 
  || |||   |||    |||| ||| ||  |||||||||||  | c
  cc ucu   agg    ccgg gac ga  uuugguugucg  gu 
gu  u   guc   aaau    a   -  ac           gu   

>ppy-mir-1292 (-34.60)   [ppy-miR-1292:3-27]

     G      UU    CA A   U   -   g 
ccUGG AGCGGG  CCGG  G CGC Gag guu c
||||| ||||||  ||||  | ||| ||| ||| g
ggacc uugccc  ggcc  c gcg cuc cag u
     -      uc    -c -   -   g   u 

>ppy-mir-1293 (-29.20)   [ppy-miR-1293:3-24]

-----u            ----    UUU          cu 
      cUGGGUGGUCUG    UAGA   GUUUgugcag  u
      ||||||||||||    ||||   ||||||||||  g
      gauucaccaggu    gucu   uaaacacguc  u
auuucu            ccag    --c          ca 

>ppy-mir-1295 (-50.50)   [ppy-miR-1295:49-69]

--                   c        u   g aau 
  aggacauuuuacccagauc guggccua uca a   g
  ||||||||||||||||||| |||||||| ||| |   u
  uccuguaaAGUGGGUCUAG CGCCGGAU agu u   g
cc                   A        U   g ccg 

>ppy-mir-1296 (-50.20)   [ppy-miR-1296:16-37]

---a       aacu         C CU        CU   u     a 
    ccuaccu    gggUUAGGG C  GGCUCCAU  CCu uagga a
    |||||||    ||||||||| |  ||||||||  ||| ||||| a
    gggugga    cccaauccc g  ucggggug  ggg gucuu c
uguc       ----         a cu        ag   u     c 

>ppy-mir-1297 (-19.60)   [ppy-miR-1297:52-68]

uguuua  u   g g    uc   ug         aucu 
      uc cua g uuga  uau  gaauuacuu    g
      || ||| | ||||  |||  |||||||||     
      ag gau U GACU  AUG  CUUaaugaa    a
---caa  u   G G    UA   GA         accg 

>ppy-mir-1298 (-48.10)   [ppy-miR-1298:18-39]

----agac       u         U    C             ------       ccc 
        gaggagu aagagUUCA UCGG UGUCCAGAUGUAu      ccaagua   u
        ||||||| ||||||||| |||| |||||||||||||      |||||||    
        cuuuuca uuuucaagu aguc acgggucuacaua      gguuuau   g
acucagaa       c         c    a             aauaac       ugu 

>ppy-mir-1299 (-26.04)   [ppy-miR-1299:14-35]

--       gc  ug   UG   ---    A G  A  GAcaaa 
  ccucaua  ag  UUC  GAA   ACCU C UG GG      c
  |||||||  ||  |||  |||   |||| | || ||       
  ggagugu  uc  aag  cuu   ugga g ac cc      a
ag       -a  cu   gu   gug    c -  a  agacuu 

>ppy-mir-1301 (-45.80)   [ppy-miR-1301:48-71]

--        g           -     - c      -  gu 
  ggauugug ggggucgcucu aggca c gcagca cu  g
  |||||||| ||||||||||| ||||| | |||||| ||  c
  ccugacac CUUCAGUGAGG UCCGU G CGUUgu gg  u
cu        a           G     C A      a  gg 

>ppy-mir-1302-1 (-57.80)   [ppy-miR-1302:73-93]

-      ccag       -                  g      --  c     c   a              
 ggaugc    uuaguuu gaauuuuagauaaacaac aauaau  uu uuagc uaa uaugucccaagcu 
 ||||||    ||||||| |||||||||||||||||| ||||||  || ||||| ||| |||||||||||| u
 uuuacg    aauuaaa cuuagagucuauuuguug uuauua  aa AAUCG AUU AUACAGGGUUuga 
u      ----       a                  g      ca  A     U   C              

>ppy-mir-1302-2 (-57.80)   [ppy-miR-1302:73-93]

-      ccag       -                  g      --  c     c   a              
 ggaugc    uuaguuu gaauuuuagauaaacaac aauaau  uu uuagc uaa uaugucccaagcu 
 ||||||    ||||||| |||||||||||||||||| ||||||  || ||||| ||| |||||||||||| u
 uuuacg    aauuaaa cuuagagucuauuuguug uuauua  aa AAUCG AUU AUACAGGGUUuga 
u      ----       a                  g      ca  A     U   C              

>ppy-mir-1302-3 (-20.90)   [ppy-miR-1302:56-76]

--        a   gg  a    u     g    cac      uag 
  aacaaaua uuu  ua uaua guaug ccca   aauauu   g
  |||||||| |||  || |||| ||||| ||||   ||||||   a
  uuguuuau aaa  AU GUAU CAUAC GGGU   Uuauaa   c
ag        g   AA  C    U     A    ---      caa 

>ppy-mir-1302-4 (-21.10)   [ppy-miR-1302:40-60]

ac     ---           cau        g ugc 
  aacau   uuuuuuuagua   guaugucu g   a
  |||||   |||||||||||   |||||||| |   a
  uugug   aaaaAAAUCGU   CAUACAGG U   c
-c     auu           AUU        G Uaa 

>ppy-mir-1302-5 (-36.80)   [ppy-miR-1302:66-86]

--        a   u        u  a    -- ag       -c     u     a  a  ugc 
  cccauuua acu gaauuuca au aaca  g  uaauuuu  agcau agugu uc ca   a
  |||||||| ||| |||||||| || ||||  |  |||||||  ||||| ||||| || ||   g
  ggguagau uga cuuaaagu ua uugu  u  auuaaaA  UCGUA UCAUA AG GU   u
ac        g   c        c  g    gg gg       AA     U     C  G  Uua 

>ppy-mir-1303 (-41.90)   [ppy-miR-1303:51-72]

--    g                  caa     c     uuu 
  ggcu ggcaacauagcgagaccu   cucua aauuu   u
  |||| ||||||||||||||||||   ||||| |||||   u
  ucgg ccguugUAUCGUUUUGGG   GAGAU Uuaaa   u
uu    a                  ACA     U     uuu 

>ppy-mir-1304 (-56.60)   [ppy-miR-1304:20-41]

--aaa a   a       ca                A      au 
     c cuu agcccag  gUUCGAGGCUACAGUG GAUGUG  c
     | ||| |||||||  |||||||||||||||| ||||||  c
     g gaa ucggguc  caagcuccgaugucac cuacgc  u
acuua c   c       cc                c      cg 

>ppy-mir-1305 (-36.20)   [ppy-miR-1305:51-72]

--aa               a       -u      uguu    g 
    gauccugcuguuucu ccauuag  uuugaa    uauu u
    ||||||||||||||| |||||||  ||||||    |||| a
    uuaggacgacAGAGA GGUAAUC  AAAUUU    auag a
ccuc               G       UC      --Uc    a 

>ppy-mir-1306 (-33.80)   [ppy-miR-1306:55-72]

g  ag a    -c       uccccu  a        gugg   a 
 ug  c gucu  caccacc      gc aacgucca    ugc g
 ||  | ||||  |||||||      || ||||||||    |||  
 gc  g cagg  GUGGUGG      CG UUGCAggu    aug a
a  cu a    ua       ---UCU  G        ---a   g 

>ppy-mir-1307 (-57.30)   [ppy-miR-1307:80-101]

--     ag  -cc       ---  -ac   --c        c a   u       -a  u  a   gc   uc  ug 
  cauca  ac   agcugag   uc   ugu   acugccua c auc cgaccgg  cc cg ccg  ucg  ug  u
  |||||  ||   |||||||   ||   |||   |||||||| | ||| |||||||  || || |||  |||  ||   
  guggu  ug   ucgacuu   ag   acg   uggcggau g ugG GCUGGCU  GG GC GGC  Agc  ac  u
ca     cu  uuc       uua  cau   uac        a a   U       GC  U  -   UC   ua  cg 

>ppy-mir-1322 (-11.35)   [ppy-miR-1322:51-68]

------------         aauuagaaaccu   ugu 
            aguaucaug            acu   u
            |||||||||            |||    
            UCGUAGugc            uga   a
UCGUAGUCGUCG         gaagaauacauu   uac 

>ppy-mir-1323 (-37.60)   [ppy-miR-1323:11-32]

ac   g             A  G         gugg 
  uga guccUCAAAACUG GG GCAUUUUCU    u
  ||| ||||||||||||| || |||||||||    u
  acu uagggguuuugac cc cgugaaagg    u
-a   g             -  a         aaag 

>ppy-mir-1324 (-32.20)   [ppy-miR-1324:61-84]

--------  u   c   u     -caga   gc  u  c    cu     c 
        cc gaa agg gcacg     cug  cc gc cuca  gggaa c
        || ||| ||| |||||     |||  || || ||||  ||||| c
        gg cUU UCC CGUGU     GAC  GG Cg gggu  uccuu c
accucgga  u   U   -     UUUAA   -A  C  u    cc     c 

>ppy-mir-1468 (-34.87)   [ppy-miR-1468:13-33]

     gu gu  C         C           uguacauu 
ggugg  g  uu UCCGUUUGC UGUUUUGCUGa        c
|||||  |  || ||||||||| |||||||||||         
cuacc  c  aa agguaaacg auaaaacgacu        a
     ug uu  a         a           cuuacuca 

>ppy-mir-1469 (-25.80)   [ppy-miR-1469:1-22]

-       CGG   GCGG     g 
 CUCGGCG   GGC    GCUCC g
 |||||||   |||    ||||| g
 gggccgc   ccg    cgggg u
g       -aa   --ag     u 

>ppy-mir-1471 (-29.60)   [ppy-miR-1471:1-22]

    -G  -UG         G    gag 
GCCC  CG   UGGAGCCAG UGUg   c
||||  ||   ||||||||| ||||   c
cggg  gu   aucucgguc acac   g
    ga  uua         g    gag 

>ppy-mir-1537 (-33.20)   [ppy-miR-1537:40-61]

              u           ccu 
acagcuguaauuag caguuuucugu   g
|||||||||||||| |||||||||||   u
UGUUGACAUUAAUC GUCAAAAgaca   c
              U           cac 

>ppy-mir-1538 (-35.20)   [ppy-miR-1538:39-58]

            aacaa     u  - uuc 
gggaacagcagc     gggcc cg c   c
||||||||||||     ||||| || |    
UCCUUGUCGUCG     CCCGG gc g   u
            ---GG     C  c ccg 

>ppy-mir-1827 (-19.10)   [ppy-miR-1827:49-66]

--    - a  aca    u      aaag  au   a 
  ucag c gc   gccu cggccu    ca  gag a
  |||| | ||   |||| ||||||    ||  |||  
  AGUU G UG   CGGA GUcgga    gu  cuc g
UA    A A  --A    -      --aa  --   c 

>ppy-mir-1908 (-42.50)   [ppy-miR-1908:10-30]

-----   au    C       AA   GAUU  U    a  u u 
     ggg  gccg GGCGGGG  GGC    GG Ccgg ug g g
     |||  |||| |||||||  |||    || |||| || | g
     ccc  cggc ccgccuc  ccg    cc ggcc ac c u
ccccg   -c    c       gg   ----  -    -  - a 

>ppy-mir-1909 (-34.20)   [ppy-miR-1909:48-69]

cauc    acaa       ug  gguguugcccuggggc 
    cagg    uggugag  cc                c
    ||||    |||||||  ||                g
    gucu    GCCACUC  GG                u
-ccc    --ac       GU  GCCGGGGGUGCguccc 

>ppy-mir-1910 (-30.60)   [ppy-miR-1910:12-32]

uguc      -gCCA       GC CA  -A      ugc 
    cccuca     GUCCUGU  C  CC  CCUucg   u
    ||||||     |||||||  |  ||  ||||||   g
    gggagu     uaggacg  g  gg  ggaggu   u
-aac      aacag       aa ac  ag      ucc 

>ppy-mir-1912 (-31.00)   [ppy-miR-1912:46-67]

---     gg    g u         gg   u    a ua 
   cucua  augu c cauugcaug  cug guau g  u
   |||||  |||| | |||||||||  ||| |||| |  u
   gagau  uacA G GUGACGUAC  GAC CAUa c  a
uua     aa    A U         GA   C    a uu 

>ppy-mir-1913 (-29.50)   [ppy-miR-1913:47-68]

   -u    cucc      ---a     cc    aggc   c 
acc  cuau    uggcag    ggagg  gcag    ugg u
|||  ||||    ||||||    |||||  ||||    |||  
ugg  ggug    ACCGUC    CCUCC  CGUC    acc u
   uc    ---a      GUCG     CC    -Aaa   u 

>ppy-mir-1914 (-40.50)   [ppy-miR-1914:13-34]

c   u a    -g   U    CC U   A      cu   g 
 gug g gccc  CCC GUGC  G CCC CUUCUG  gcu c
 ||| | ||||  ||| ||||  | ||| ||||||  |||  
 cac c cggg  ggg cacg  c ggg gaggac  cga u
-   u c    ga   u    cc u   -      -u   u 

>ppy-mir-1915 (-37.50)   [ppy-miR-1915:47-66]

ugagaggccucacc   a  --u       gg      - a   g     
              uug cu   gcugccc  gccgug c ccc uggg 
              ||| ||   |||||||  |||||| | ||| ||| C
              agc ga   cggcggG  CGGCGC G GGG ACCC 
--------------   -  ucc       GG      A C   -     

>sja-mir-1 (-21.30)   [sja-miR-1:21-42]

c      -       a         -   ----      AGUA  G 
 aaaagu aguauuc uuauaUGGA AUG    UGGCGA    UG U
 |||||| ||||||| ||||||||| |||    ||||||    || C
 uuuuca uuaugag aguauauuu uac    aucguu    ac u
-      c       a         c   uaag      ---g  a 

>sja-mir-2a (-37.70)   [sja-miR-2a-5p:14-35] [sja-miR-2a-3p:47-68]

a   u    a   -CA              A     uug 
 ccu uugc ccg   GUCAAUAUUGGCUG UGGCA   u
 ||| |||| |||   |||||||||||||| |||||   u
 gga aaug gGC   UAGUUAUGACCGAC ACUgu   u
-   u    g   AAG              -     uau 

>sja-mir-2b (-31.50)   [sja-miR-2b-5p:11-32] [sja-miR-2b-3p:45-68]

--      u  - C       --   A      GC  acgu 
  aggugg gc g GUCUCAA  AGG CUGUGA  CA    a
  |||||| || | |||||||  ||| ||||||  ||     
  uccauc cg C CAGGGUU  UCC GACACU  gu    a
cg      -  A A       CG   C      AU  cauu 

>sja-mir-7 (-48.00)   [sja-miR-7-5p:21-43] [sja-miR-7-3p:106-127]

-au   --   -     uuaau         CUG      U      gauugaugaaaguuuuaaguauuucauaa 
   guu  gcc guugc     caUGGAAGA   GUGAUA GUUGUU                             u
   |||  ||| |||||     |||||||||   |||||| ||||||                              
   caa  ugg uaacg     GUACCUUCU   CGCUAU CAACaa                             u
cuu   gu   a     --uau         -UA      U      gcauuauaguaacaaaacuacuucgaaau 

>sja-mir-8 (-31.50)   [sja-miR-8-5p:11-31] [sja-miR-8-3p:44-66]

---a     a         --A           U  uaaa 
    ugagu uggCAUCUU   CUAAUAGUAUU GA    g
    ||||| |||||||||   ||||||||||| ||     
    acucg aCCGUAGAA   GAUUGUCAUAA cu    a
cuuc     -         AUG           U  uuua 

>sja-mir-10 (-26.70)   [sja-miR-10-5p:11-32] [sja-miR-10-3p:47-69]

--  uc     -gAA  C       C        G  gcc 
  cc  aguau    CC UGUAGAC CGAGUUUG au   g
  ||  |||||    || ||||||| |||||||| ||    
  gg  ucauA    GG AUAUCUG GCUUAAAc ua   u
aa  uu     GAAA  A       A        g  gau 

>sja-mir-31 (-31.00)   [sja-miR-31-5p:11-33] [sja-miR-31-3p:53-73]

--     g             UAC  C         u  aau 
  uauuu uuguUGGCAAGAU   GG GAAGCUGAa ca   u
  ||||| |||||||||||||   || ||||||||| ||   u
  augga aauAACCGUUUUA   UC CUUCGAcuu gu   a
cg     -             -UU  A         u  aaa 

>sja-mir-36 (-30.61)   [sja-miR-36-5p:11-33] [sja-miR-36-3p:61-83]

--uauag        -     C G       CA   auucaacaauc 
       cuugcGAA GAAUG C AUCCGGU  GCC           u
       |||||||| ||||| | |||||||  |||           a
       gaaCGCUU CUUAC G UGGGCCA  Cgg           u
uauuaua        A     A A       -C   caaauaaugac 

>sja-mir-61 (-24.20)   [sja-miR-61:21-42]

--------------------------------------------------cauucuaacuuuacau     --GA     AA    A  -C   Ucc 
                                                                  cacaU    CUAGA  GUGC CU  ACU   a
                                                                  |||||    |||||  |||| ||  |||    
                                                                  gugua    gauuu  uacg ga  uga   u
auuauuuagauguuauguguaacuugaaugcguuuaaaugcauuguaucccuuaaaaaugacaccu     aaga     ac    a  ca   cuc 

>sja-mir-71b (-36.20)   [sja-miR-71b-5p:11-33] [sja-miR-71b-3p:63-83]

-  -  uu    U         G    G    A    uau g   ugu 
 cc gu  gcug GAAAGACUU AGUA UGAG CGcu   a cgu   u
 || ||  |||| ||||||||| |||| |||| ||||   | |||    
 gg ca  cgGC CUUUCUGAA UCAU ACUC gcgg   u gcg   g
c  u  cu    C         -    -    C    -cu g   ucu 

>sja-mir-124 (-28.00)   [sja-miR-124-5p:11-35] [sja-miR-124-3p:66-86]

--uaua  u   C     U     AU         ---     aaaa   a 
      ug aug CAUUU CCGCG  UGCCUUGAU   UUguu    gaa a
      || ||| ||||| |||||  |||||||||   |||||    ||| u
      ac uAC GUAAG GGCGC  ACGGAAUua   aacaa    cuu g
cguggc  c   U     U     --         uaa     --ca   a 

>sja-mir-133 (-16.84)   [sja-miR-133:21-42]

-------------caugcuguucuuaugagauuUUGGUCCCUAUCAACCAGCUGUa     u   uucaucau   a 
                                                        gugga agc        cag c
                                                        ||||| |||        ||| a
                                                        uaucu uug        guc u
auaagguuuaaaguugauuguaagaacauuuauauaauuuuuguaagcuuuccgua     u   --uucauu   a 

>sja-mir-190 (-42.02)   [sja-miR-190-5p:21-43] [sja-miR-190-3p:84-103]

-cgacag        u     -U       AUG       U     ---------ca        ca 
       uaaacugg cgaug  GAUAUGU   GGUUACU GGUGu           gcggauaa  u
       |||||||| |||||  |||||||   ||||||| |||||           ||||||||   
       auuugauu gcuaU  CUAUACA   CCAGUGA Ccaca           cgcuuauu  g
cuccuag        c     CC       -GA       -     uaacgaauuac        uu 

>sja-mir-219 (-47.60)   [sja-miR-219-5p:21-41] [sja-miR-219-3p:105-126]

ucu    ---ac        cac    U       C           uagaaacauuuucaauuauuaucauua 
   guga     aaucgauu   UGAU GUCCAUU GCAUUUCUugu                           u
   ||||     ||||||||   |||| ||||||| |||||||||||                           u
   uacu     uuagcuag   ACUA CAGGUAA UGUGGAGAaca                           c
-uc    aauua        uAU    -       U           cuuaauuuauaauaguaguaauaguaa 

>sja-mir-277 (-18.80)   [sja-miR-277:21-40]

auaannnnnnnnnnauauugUAAAUGCAUUUUCUGGCCCGuaacuaa    -caau     -uc    u    gaua 
                                               gaca     gaaca   cuua cuuu    g
                                               ||||     |||||   |||| ||||    u
                                               cugu     uuugu   gaau gaaa    u
-------------ggguagugacuuuucuuuccuguagauaauguaa    ucugu     uuu    u    auuu 

>sja-mir-307 (-42.10)   [sja-miR-307:124-143]

a   --a       -ua   a       uu      ---------       auaauuaauaauaauuauuauuauuauuau 
 gaa   cuccuca   aag agguugu  gaugua         auauuca                              u
 |||   |||||||   ||| |||||||  ||||||         |||||||                              a
 cuu   gggGAGU   UUC UCCAACA  CUacau         uauaagu                              u
g   cac       UAG   A       --      ucaauaaaa       agaagaaauauaauaauaaaguagcuuuac 

>sja-mir-310 (-30.80)   [sja-miR-310:101-122]

guagaga   ggga     --a     gaugacgcgacucucguggagaguacuuauccgaagaugacuucau 
       auu    gauau   gucaa                                              c
       |||    |||||   |||||                                              g
       uaa    uugua   uagUU                                              a
----cag   -aag     agg     UCCGGCCCUUAAACGUUAUAaguggcugguauuuggugacugcaaa 

>sja-mir-2162 (-31.90)   [sja-miR-2162-5p:11-33] [sja-miR-2162-3p:45-65]

--  a    au         U        UU     ug 
  cu gggg  gAGUGAGAU GUUGCAUA  UACAu  c
  || ||||  ||||||||| ||||||||  |||||  u
  gg ccuc  CUCACUUUG CAACGUAU  AUgua  g
ag  g    aU         -        -U     ug 

>sja-mir-3479 (-31.50)   [sja-miR-3479-5p:11-32] [sja-miR-3479-3p:45-66]

--c       ug       U  U        U  guga 
   auguuug  AGGUGGA GU AGUGCAAU UA    c
   |||||||  ||||||| || |||||||| ||     
   uauaaac  UCCGCUU CA UCACGUUA au    g
gga       GU       C  U        U  aaau 

>sja-mir-2c (-28.12)   [sja-miR-2c-5p:11-32] [sja-miR-2c-3p:48-69]

-   a    caA      --UU  A          auuga 
 uuc ggcg   CCCUUG    CG CUGUGAUGUG     a
 ||| ||||   ||||||    || ||||||||||     a
 aag cugc   GGGAAU    GC GACACUAUac     u
a   -    uuC      UCGU  C          ccgau 

>sja-mir-2d (-31.30)   [sja-miR-2d-5p:11-32] [sja-miR-2d-3p:58-79]

-   cc           ----  U          U   gg   cc     
 cga  aguucGUCAUC    CA GGAUUGUGAU UUc  acu  augu 
 |||  |||||||||||    || |||||||||| |||  |||  ||| u
 gcu  uuaagcAGUGG    GU CCUGACACUA aag  uga  uacu 
u   --           AUUC  -          U   --   au     

>sja-mir-3480 (-19.80)   [sja-miR-3480-5p:11-30] [sja-miR-3480-3p:47-66]

--agu    g     --  --A     A    A  U   a 
     gacg cuGCA  GG   GUUUG UUUC CA gug g
     |||| |||||  ||   ||||| |||| || ||| u
     uugu GACGU  CC   CAGAC AAAg gu cgc a
cucuc    a     AA  AUA     -    g  c   c 

>sja-mir-3481 (-22.10)   [sja-miR-3481-5p:11-31] [sja-miR-3481-3p:62-81]

--gauguaacuuU   U     U     -          cuuu   g 
             UCU UACAG GGGUC UCUUUguguu    ugc a
             ||| ||||| ||||| ||||||||||    |||  
             AGG AUGUU UCUAG GGaaacguag    acg u
gguauuuuuaAAC   U     -     U          -uuu   g 

>sja-mir-3482 (-54.50)   [sja-miR-3482-5p:11-35] [sja-miR-3482-3p:60-80]

--           C            UU    AA   -  ---a      
  cuaguauggaA UCCUCGGCAGUG  CGCA  CCU ga    gcccg 
  ||||||||||| ||||||||||||  ||||  ||| ||    |||| u
  gaucauacCUU AGGAGCCGUCAC  GCGU  gga cu    cgggg 
ag           U            --    -A   u  aaga      

>sja-mir-3483 (-25.10)   [sja-miR-3483-5p:11-30] [sja-miR-3483-3p:40-60]

--aa      cc  CU  - A        A        
    ucuuca  AG  GA G UGGUUAGG CAUgugu 
    ||||||  ||  || | |||||||| |||||| u
    agaagu  UC  CU C ACCAGUCC GUAuaca 
aacg      -U  AU  G C        -        

>sja-mir-3484 (-22.63)   [sja-miR-3484-5p:11-32] [sja-miR-3484-3p:48-67]

gu  c    aU       C           UUaucaa 
  ga aggu  UAGGUUU GUUGUUUGUAU       u
  || ||||  ||||||| |||||||||||       u
  cu ucca  AUUCAAA CGACAAACAUA       u
cu  a    aU       U           cacaauc 

>sja-mir-3485 (-21.61)   [sja-miR-3485-5p:16-37] [sja-miR-3485-3p:45-66]

g  uuuuaccaacu      A   G  -GU           
 gc           uGCGUC CUU UG   GUAGGCGAga 
 ||           |||||| ||| ||   ||||||||| c
 cg           ACGCAG GAA GC   CAUUUGcuua 
a  ---ugucauuU      -   A  AGU           

>sja-mir-3486 (-18.70)   [sja-miR-3486-5p:14-31] [sja-miR-3486-3p:61-81]

auug   cc   c    U    UG ---       g  cuu  u uuu 
    ggu  gug UCUC GUGU  A   AUUUGAg au   gc c   c
    |||  ||| |||| ||||  |   ||||||| ||   || |    
    ucg  caU AGAG CGUA  U   UGGAcuc ua   ug g   c
ugca   -u   U    U    GU AUC       g  ---  u uua 

>sja-mir-2e (-24.70)   [sja-miR-2e-5p:11-31] [sja-miR-2e-3p:53-73]

ccaccgcu        --   A     A U     --u   ac 
        cuUACCAA  CUU GACUG G UAUac   gcu  u
        ||||||||  ||| ||||| | |||||   |||   
        gaaUGGUU  GAA CUGAC C AUaug   cga  g
-uaguuuu        UC   C     A U     uuu   au 

>sja-mir-3487 (-23.30)   [sja-miR-3487:11-30]

-gacg   c  U      --AC     -    CA c    cuu 
     ucc cg CCUCGA    UGUUG UGGC  c gcac   c
     ||| || ||||||    ||||| ||||  | ||||   a
     agg gu ggaguu    acagc acug  g cgug   u
uaaca   a  -      aacc     g    -a a    cuc 

>sja-mir-3488 (-19.60)   [sja-miR-3488:39-58]

u    -aa    -      u a    aau     g 
 ggug   ugac gauuga g uuau   ggcgc c
 ||||   |||| |||||| | ||||   |||||  
 ccgc   auUG UUGAUU C GAUG   UCGug a
g    gag    G      - -    GCC     c 

>sja-mir-3489 (-31.20)   [sja-miR-3489:58-77]

caauu      ca    -     g   c   gacu      gag 
     guuccu  ccuc aauug ugu gcu    cugcac   a
     ||||||  |||| ||||| ||| |||    ||||||   u
     cagggG  GGAG UUGAC ACA CGg    ggcgug   g
aacug      CA    C     A   C   ---u      gaa 

>sja-mir-3490 (-23.10)   [sja-miR-3490:68-87]

guguu     gc           aa   auu   ---   uu   -     u 
     auugu  auucuuacgac  gaa   gga   gca  caa ucguu u
     |||||  |||||||||||  |||   |||   |||  ||| |||||  
     uaaua  UAGGGGUGUUG  UUU   CCU   ugu  guu agcag c
ggaac     -A           GG   ---   uau   -u   g     u 

>sja-mir-3491 (-21.90)   [sja-miR-3491:51-70]

aacuucucaa      aa   u  agaa       acug 
          ugaacu  agu gu    ucagccg    a
          ||||||  ||| ||    |||||||    a
          ACUUGA  UCA UA    AGUcggc    a
uuaucauaag      GG   U  -GCG       aucg 

>sja-mir-3492 (-27.20)   [sja-miR-3492:11-31]

a     c      C   CU   A       U  caccag  c 
 gcuuc uguAUC GUG  GAG UUUCGUC gu      gc a
 ||||| |||||| |||  ||| ||||||| ||      || c
 cgaag gcauag cac  cuc agaguag ca      cg c
g     u      a   --   -       u  ------  a 

>sja-mir-3493 (-29.10)   [sja-miR-3493:11-31]

aau       ---U    ---    GU        - Ug 
   ggagcca    GGAU   UUCA  AGCAUCCA C  a
   |||||||    ||||   ||||  |||||||| |   
   ucucggu    ccua   aagu  ucguaggu g  a
aag       ccac    cuc    gu        a uc 

>sja-mir-3494 (-25.60)   [sja-miR-3494:11-32]

gga     u -      AGAC   -     AUUUuggaguacauguuua 
   gagac c GACAGA    UGC CGCUC                   a
   ||||| | ||||||    ||| |||||                   a
   cucug g cuguuu    aug gcgag                   c
uaa     c u      ----   c     caugauuccauacuagacu 

>sja-mir-3495 (-22.70)   [sja-miR-3495:65-85]

a      ga  acau     gg   c   -ugg   -      caaa gc 
 gaugca  cu    gguug  gcc acg    uga ucguaa    u  u
 ||||||  ||    |||||  ||| |||    ||| ||||||    |   
 cuacgu  ga    UCGGU  CGG UGC    ACU gguauu    a  u
-      -g  ---c     AA   U   UAAA   u      ccag aa 

>sja-mir-3496 (-26.90)   [sja-miR-3496:11-32]

cuaca   -     -  ---    G     UG  UUUuag    acu 
     gca caCGG CG   UCUG ACGUU  GU      uugc   a
     ||| ||||| ||   |||| |||||  ||      ||||   c
     cgu gugcu gc   aggc uguaa  cg      aacg   u
ggcca   a     u  uaa    a     gu  -uguga    cau 

>sja-mir-3497 (-25.70)   [sja-miR-3497:11-30]

aaaaaauac     A   A  -   A  G          
         uCGCA GGG CU ACC UG CAcuuaucc 
         ||||| ||| || ||| || |||||||| u
         agcgu ccu gg ugg ac guggguaga 
uggagagga     -   a  c   -  g          

>sja-mir-3498 (-26.00)   [sja-miR-3498:11-30]

-   -    -gcuUA  --     -  A      -        --a   cu 
 agu agcu      GA  CGGUU UG AACAUG GAgaaaua   gcu  u
 ||| ||||      ||  ||||| || |||||| ||||||||   |||   
 uca ucga      cu  gucag ac uuguac cucuuuau   ugg  u
g   g    aguaca  ac     c  c      a        gca   uc 

>sja-mir-3499 (-25.90)   [sja-miR-3499:68-89]

uuc    aga      u     -  - u ugc  u   u   guaa      g 
   guug   gacgga aucuc gc c g   ca aag guc    guuggc a
   ||||   |||||| ||||| || | |   || ||| |||    ||||||  
   cagc   cugUUU UAGAG CG G C   GU Uuc cgg    uagccg a
cca    ---      -     U  U C UAA  C   -   --gc      u 

>sja-mir-3500 (-21.30)   [sja-miR-3500:11-31]

uucg           AUCG     A     Ug    uu 
    caggaaAGGAG    GUGGU GAUUG  auug  u
    |||||||||||    ||||| |||||  ||||  g
    gucuuuuuuuc    uacua uuaau  uaau  c
auga           cuug     a     gu    ua 

>sja-mir-3501 (-24.40)   [sja-miR-3501:11-30]

aa     uacAA  --UU     -       U  aaaugguaacc 
  guguu     CC    GUAGU UUCGUUG Gg           a
  |||||     ||    ||||| ||||||| ||           u
  cacag     gg    cguca aggcggu cc           u
cc     --uac  uaau     u       -  auccaaagggc 

>sja-mir-3502 (-23.40)   [sja-miR-3502:67-86]

c         --uu    gg    -   auc   ac ug ucu    cug 
 cuuaucgau    caug  gcgg cgu   cau  g  a   cuag   u
 |||||||||    ||||  |||| |||   |||  |  |   ||||   a
 gaguaguug    GUAC  UGCU GCA   GUG  c  u   gguc   u
c         UUCU    -A    A   ---   aa gu ccu    aua 

>sja-mir-3503 (-35.40)   [sja-miR-3503:11-33]

-            C            ACG  UU  aa 
 gugacugguaAG GGAAUCCAGGAC   CG  Uc  c
 |||||||||||| ||||||||||||   ||  ||   
 cauugaucguuc cuuuagguuuug   gu  ag  c
a            a            --a  uu  au 

>sja-mir-3504 (-23.50)   [sja-miR-3504:66-85]

uauuua -        cc   u cc       uu    -ac  uc     
      c augcuucu  cug c  ccacauc  gcgg   au  cagg 
      | ||||||||  ||| |  |||||||  ||||   ||  ||| u
      g uaCGGGGA  GAC G  GGUGUGg  uguu   ua  guca 
gcccug c        -A   U UU       -u    aau  ua     

>sja-mir-3505 (-25.90)   [sja-miR-3505:11-33]

ugcgcaagugUG  U  C    C  AG       --g  --g       u 
            AC GU UGGA AC  UAGUUUg   cg   uaaacgc g
            || || |||| ||  |||||||   ||   |||||||  
            ug ca accu ug  gucagac   gc   guuugcg u
----------ga  c  -    -  -a       aaa  aca       g 

>sja-mir-3506 (-19.40)   [sja-miR-3506:67-86]

ua    u    ca   a     ucg    a    uug     g   ggau 
  guuu ugac  ucg ugucu   aauc ucgu   uguua cug    u
  |||| ||||  ||| |||||   |||| ||||   ||||| |||    a
  uaag auuG  AGC GCAGA   UUGG AGCA   auaau gau    c
uc    u    UG   A     ---    -    ---     g   gaaa 

>sja-mir-3507 (-22.10)   [sja-miR-3507:67-87]

u    gcu    uua c      -    -     -aa       a u   ga 
 agau   guua   a ugcuca gcuc guuuu   cugauuu g uuc  c
 ||||   ||||   | |||||| |||| |||||   ||||||| | |||   
 ucug   uagu   U AUGGGU CGGG UAAGA   gacuaaa c aag  u
-    ---    -cg C      A    A     GAa       - u   ag 

>ahy-MIR156a (-56.30)   [ahy-miR156a:18-37]

ga      uauaa   u           -          -a     g   u   c      
  agagau     aug UGACAGAAGAG AGAGAGCACa  cccga aaa ggu aaaga 
  ||||||     ||| ||||||||||| ||||||||||  ||||| ||| ||| |||| a
  uuucua     uac acugucuucuc ucucucgugu  ggguu uuu cca uuucu 
-a      -uuuc   u           a          ga     g   -   u      

>ahy-MIR156b (-58.00)   [ahy-miR156b-5p:23-43] [ahy-miR156b-3p:94-114]

-------      acuau   u     u U         -A             -a     u     ---    ga 
       ggaggc     ugg agagu g UGACAGAAG  UAGAGAGCACaaa  gauga augca   uaua  u
       ||||||     ||| ||||| | |||||||||  |||||||||||||  ||||| |||||   ||||   
       ucuccg     acu ucuca C ACUGUCUUC  AUCUCUCGuguuu  uuauu uacgu   auau  a
aucuuua      -----   -     - U         GA             cc     u     cug    au 

>ahy-MIR156c (-57.60)   [ahy-miR156c:21-41]

----------  --u    --     uauaa   U           -          -a     g   u   c      
          cc   cgaa  gagau     aug UGACAGAAGAG AGAGAGCACa  cccga aaa ggu aaaga 
          ||   ||||  |||||     ||| ||||||||||| ||||||||||  ||||| ||| ||| |||| a
          gg   guuu  uucua     uac acugucuucuc ucucucgugu  ggguu uuu cca uuucu 
uucuagauau  uau    au     -uuuc   u           a          ga     g   -   u      

>ahy-MIR159 (-86.60)   [ahy-miR159:157-177]

------------------a            ga       ca        -   -u      auu     g   a c      uc  a   u      - -a    uac 
                   guggagcuccuu  aguccaa  gagggucu ugg  ggguag   gagcu cua g uaugga  cc cag acuacc c  uaua   c
                   ||||||||||||  |||||||  |||||||| |||  ||||||   ||||| ||| | ||||||  || ||| |||||| |  ||||    
                   cAUCUCGAGGGA  UUAGGUU  uuccuaga acc  uccauu   uucga ggu c auaccu  gg guc ugaugg g  guau   c
uaaucuuucuccuacgaua            AG       Ua        c   uu      -ac     g   c u      ua  c   u      u ac    uac 

>ahy-MIR160 (-61.20)   [ahy-miR160-5p:21-41] [ahy-miR160-3p:86-106]

-aaaua      -uuaug       C         GA            uua         ga 
      uucgaa      ugucUGC UGGCUCCCU  AUGCCAuguaag   guuuguuaa  a
      ||||||      ||||||| |||||||||  ||||||||||||   |||||||||  a
      aaguuu      gcGGACG ACUGAGGGA  UACGguauauuc   caaacaauu  a
uauaca      uacuua       C         AG            -ug         ag 

>ahy-MIR167 (-50.00)   [ahy-miR167-5p:21-41] [ahy-miR167-3p:78-98]

ga      -a   - u  a  u           G        Uaac    -    uc uau 
  ucaugc  cca c ac ag UGAAGCUGCCA CAUGAUCU    uuuc ccuc  c   g
  ||||||  ||| | || || ||||||||||| ||||||||    |||| ||||  |    
  aguacg  ggu g ug uC ACUUUGACGGU GUACUAGA    agag gggg  g   a
ua      aa   u u  a  C           -        --cu    u    uu uuu 

>ahy-MIR394 (-42.00)   [ahy-miR394:22-41]

ag    u    -  u    au      AUU   U        -  uc    
  gcau guuc ca agcc  uUUGGC   CUG CCACCUCC ga  cga 
  |||| |||| || ||||  ||||||   ||| |||||||| ||  || u
  ugua uaag gu uugg  aaaccg   gac gguggagg cu  gcc 
--    -    u  c    gc      gau   c        g  ua    

>ahy-MIR398 (-71.00)   [ahy-miR398:129-148]

uau        a    a             a        --u       -uu  gaa       auc   u      u   u 
   cucagagg guga ccugagaacacaa guaaauug   uucggag   ug   ugccaua   aca gcauaa gca u
   |||||||| |||| ||||||||||||| ||||||||   |||||||   ||   |||||||   ||| |||||| |||  
   gaguuUCC CACU GGACUCUUGUGUu cauuuaau   aagcuuu   ac   augguau   ugu cguauu cgu u
---        C    -             c        uuu       uau  ---       --a   u      -   a 

>ahy-MIR408 (-45.10)   [ahy-miR408-5p:21-41] [ahy-miR408-3p:81-101]

-----          u  caa   a  -     C      A      a  gaacua     ag   c 
     gaagaagaga ga   aga CU GGGAA AGGCAG GCAUGA ug      ucaau  aca a
     |||||||||| ||   ||| || ||||| |||||| |||||| ||      |||||  ||| u
     cuuuuucuuu cu   ucu GG CCCUU UCCGUC CGUAcu gc      aguua  ugu u
ucuuc          -  --c   C  U     C      A      c  ------     cu   u 

>ahy-MIR3508 (-50.11)   [ahy-miR3508:106-126]

aggcaaa    --   uaucuu        ca  c  a           c    c   a -      cucguaa     u 
       auuc  ucc      ugaggaca  gg ga uccucuauucu ucuu ugc c ugccgc       aucac a
       ||||  |||      ||||||||  || || ||||||||||| |||| ||| | ||||||       |||||  
       ugag  agg      ACUCUUGU  CC CU GGGAGAUaaga agaa acg g guggug       uagug c
--cauun    uc   uunaau        AC  -  -           -    -   a u      -------     u 

>ahy-MIR3509 (-52.80)   [ahy-miR3509-5p:22-43] [ahy-miR3509-3p:68-89]

----------------------------------------uc          u        A  C       C          uuu    gauu 
                                          gacuucacgu gaaguuga UA UUGAGAG CGUUAGAUGA   gauu    u
                                          |||||||||| |||||||| || ||||||| ||||||||||   ||||     
                                          cugaagugca cuucaACU AU GACUCUC GCAAUCUAcu   uuaa    g
gauuaagauaaaaacauaauuccacuuuugaguccacuucaa          -        -  A       A          --u    auca 

>ahy-MIR3510 (-23.00)   [ahy-miR3510:14-35]

caaa     --        A   U   GC     UG  cg 
    uggcu  ugguUUAU CCA CUU  GAGAC  Aa  a
    |||||  |||||||| ||| |||  |||||  ||   
    aucga  accgagua ggu gga  uuuug  uu  g
----     uu        -   u   --     gu  ua 

>ahy-MIR3511 (-23.90)   [ahy-miR3511-5p:10-29] [ahy-miR3511-3p:56-76]

aau     --c      -      AAU   -GAac    aaag 
   cgagc   GCCAGG GCCAUG   GCA     uguu    g
   |||||   |||||| ||||||   |||     ||||    a
   guucg   UGGUCU CGGUAU   UGU     acaa    a
--c     aAA      A      CAU   aacaa    gaaa 

>ahy-MIR3512 (-26.91)   [ahy-miR3512:102-121]

--------     auuaua  ua  a   c gg  u       a     ---acu      g     gaaaaauccau 
        guuga      gu  cg ucu u  gu cguuauu gugaa      gaggua ugugu           g
        |||||      ||  || ||| |  || ||||||| |||||      |||||| |||||           u
        cgacu      ca  gc AGA A  CA GUAGUAA CGCuu      cuuuau acgua           u
gaaucuca     -----a  gg  -   U AA  -       A     aucauu      g     aacguucgaau 

>ahy-MIR3513 (-25.57)   [ahy-miR3513-5p:23-43] [ahy-miR3513-3p:99-119]

uauugucuaauu       -    ---         AG       UCu     ucuguugau    --u  uaa 
            guaaugg auuU   UAAUUUCUG  UUUGUCA   gaacu         ugug   uc   a
            ||||||| ||||   |||||||||  |||||||   |||||         ||||   ||   u
            cguugcc uaaa   GUUAAAGAU  GAAUAGU   uuugg         acau   ag   u
-----------u       a    UAU         -A       -Ug     uuguugugu    ugu  ucu 

>ahy-MIR3514 (-72.17)   [ahy-miR3514-5p:9-30] [ahy-miR3514-3p:151-172]

-------------acaaua                      G         -    cgu        -   uc    c       a         aaguuuuu 
                   gaAGGAUUCUGUAUUAACGGUG Acaugauuu aucu   uuuuaaag aua  uuug auuucau ugagauuua        a
                   |||||||||||||||||||||| ||||||||| ||||   |||||||| |||  |||| ||||||| |||||||||         
                   cUUCCUAAGACAUAAUUGCCAC Uguacugaa uaga   gaaauuuu uau  aaau uaaagua acucuaaau        u
ggggacugauuuauauuaa                      -         a    auu        a   uu    u       c         auaauggu 

>ahy-MIR3515 (-62.90)   [ahy-miR3515:134-154]

ggaggagaa      ---         c   au             cucauu          uc        -  u     a       au 
         ucaaua   auguuauuu uac  uucauuuucuaua      cucugcaccu  cuuuuaug ua gauaa ggaaaaa  a
         ||||||   ||||||||| |||  |||||||||||||      ||||||||||  |||||||| || ||||| |||||||  u
         aguugu   uacaauaaa AUG  AAGUAAAAGAUGU      gagaugugga  gaaaauac gu uuauu ucuuuuu  a
-------ag      agu         U   GC             AAaaau          gu        u  u     a       aa 

>ahy-MIR3516 (-23.30)   [ahy-miR3516:2-22]

uG     U      GA        uuc 
  CUGGG GAUAUU  CAGAAGug   u
  ||||| ||||||  ||||||||   u
  ggccc cuguga  gucuucac   c
--     -      -a        cuc 

>ahy-MIR3517 (-23.50)   [ahy-miR3517:22-42]

gcguaucuaacccaaggaagu     C    -    C C   Auaaccca     u 
                     CUGAC ACUG UGAU C GGA        agggg a
                     ||||| |||| |||| | |||        |||||  
                     gacug uggc acug g ccu        ucccc c
--------------------c     -    c    c a   --------     c 

>ahy-MIR3518 (-62.00)   [ahy-miR3518:120-140]

gcuaagcgacaa           a    au  a         a     u           a          a   g  aag    u 
            uaauuugagag uaau  gu acgaguauc ccaaa gucacucuuuu gauuugucuu uua uu   gagu g
            ||||||||||| ||||  || ||||||||| ||||| ||||||||||| |||||||||| ||| ||   ||||  
            auuaaacucuu auua  cg UGCUUAUAG GGUUU CAGUgagaaaa uuaaauagga aau aa   uuca c
------------           c    cu  G         G     C           -          -   g  gua    a 

>ahy-MIR3519 (-24.85)   [ahy-miR3519:79-99]

---ga    ug   a    gcu     -       aguucuaaacuuuuu     aau 
     ugaa  gcu ucau   uugag uguugug               cugug   a
     ||||  ||| ||||   ||||| |||||||               |||||    
     ACUU  CGA AGUA   AACUu acgauac               gacac   u
uguua    UA   C    ACU     g       ----------guuuu     aua 

>ahy-MIR3520 (-29.80)   [ahy-miR3520-5p:21-42] [ahy-miR3520-3p:63-83]

---------------gaccugg   cucua        -    GG    UA    A          uu 
                      guc     uuuauAGG UGAU  UGAA  UCUU UCuuaucuua  u
                      |||     |||||||| ||||  ||||  |||| ||||||||||   
                      cag     agguaucC AUUA  GUUU  AGAG GGAAuagaau  g
auugguugaaagcuuaanuuua   -----        U    -A    GC    -          ug 

>ahy-MIR3521 (-16.41)   [ahy-miR3521:66-86]

g     -uu      a  u   -a ug     -------       u 
 gguau   ugugac uu ccg  u  gcugu       cuuguug u
 |||||   |||||| || |||  |  |||||       |||||||  
 UCAUA   AUGCUG AG GGU  g  ugaua       gaauaau u
G     CAU      -  U   ac gu     cuuuguu       c 

>rlcv-mir-rL1-34 (-31.70)   [rlcv-miR-rL1-34-5p:20-41] [rlcv-miR-rL1-34-3p:57-78]

caaacaa   u     cuuUA       UAA A   -      u  a 
       ggc guagc     GAUGGCG   C GGC AACUUg gu u
       ||| |||||     |||||||   | ||| |||||| || g
       ucg cgucg     CUAUCGC   G CCG UUgaac cg a
cucuacc   u     uAUAC       CAA C   A      -  g 

>rlcv-mir-rL1-35 (-28.70)   [rlcv-miR-rL1-35-5p:13-34] [rlcv-miR-rL1-35-3p:49-72]

    u cc    CA   G     A  U   -     - g u 
gggc c  cggu  CCG CUCAC GC AGU ACGGa c a u
|||| |  ||||  ||| ||||| || ||| ||||| | |  
cucg g  gcUA  GGC GGGUG UG UCA UGUcu g u a
    u ua    CG   A     C  U   A     c g u 

>gso-MIR167a (-46.20)   [gso-miR167a:9-29]

g      u      U    G         ag      uu 
 cagcag UGAAGC GCCA CAUGAUCUG  uuuacc  c
 |||||| |||||| |||| |||||||||  ||||||  u
 guuguc acuucg cggu guacuagac  gaaugg  a
a      c      u    -         aa      uu 

>gso-MIR1508a (-40.70)   [gso-miR1508a:68-88]

u    uu    uc           -   a      a   -   uuaca      
 ugaa  gcua  caacugcuauu ccc uuucua acc uug     cgagc 
 ||||  ||||  ||||||||||| ||| |||||| ||| |||     |||| a
 acuu  uggu  GUUGACGAUAA GGG AAAGAU ugg aac     guucu 
a    cg    ga           A   -      c   u   ---ua      

>gso-MIR482a (-48.40)   [gso-miR482a:60-80]

          ug           -auu           uc    ag 
ggggaaggca  gguaugggggg    gggaaggaaua  caua  c
||||||||||  |||||||||||    |||||||||||  ||||  a
uccuuuuugu  cCAUACCCUCC    CCCUUCUuuau  guau  a
          ca           ACAU           -c    aa 

>gso-MIR482b (-49.60)   [gso-miR482b:60-80]

          ug           -auu           uu    ag 
ggggaagaca  gguaugggggg    gggaaggaaua  caua  c
||||||||||  |||||||||||    |||||||||||  ||||  a
uccuuuuugu  cCAUACCCUCC    CCCUUCUuuau  guau  a
          ca           ACAU           -u    aa 

>gso-MIR1510b (-47.30)   [gso-miR1510b:67-87]

    uuu      g   a                 u   -u      -  g 
ggau   auggaa ugg gggauagguaaaacaac acu  cuguaa aa u
||||   |||||| ||| ||||||||||||||||| |||  |||||| ||  
ccua   uaccuu aCC CCUUAUCCAUUUUGUUG uga  gauauu uu a
    -uc      a   A                 U   uu      g  a 

>gso-MIR1510a (-50.10)   [gso-miR1510a:67-87]

    uu       cu  a                ug    -     -   g 
ggau  uauggaa  gg gggauagguaaaacaa  acug cugua uaa u
||||  |||||||  || ||||||||||||||||  |||| ||||| |||  
ccua  guaccuu  CC CCUUAUCCAUUUUGUU  ugau gauau guu a
    -u       ac  A                GU    u     u   a 

>gso-MIR1507a (-58.70)   [gso-miR1507a:72-93]

          -                  a     -      uuuuc      
guuugucaga gguguauggagugagaga gggaa agggua     cgauu 
|||||||||| |||||||||||||||||| ||||| ||||||     |||| c
caagcAGUCU CUACAUACCUUACUCUcu cccuu ucucau     gcugu 
          G                  -     c      ----u      

>gso-MIR1507b (-48.00)   [gso-miR1507b:72-93]

     a    -                  a     au  uauu uc      
guuug caga gauguauggagugagaga gggaa  ga    u  cgauc 
||||| |||| |||||||||||||||||| |||||  ||    |  |||| c
caagc GUCU CUACAUACCUUACUCUcu cccuu  cu    a  gcuac 
     A    G                  -     cu  ---c uu      

>gso-MIR3522a (-43.10)   [gso-miR3522a:13-33]

     au  u       C  A            -cca  ugau   g 
acagg  cg ccUGAGA CA AUGAGCAGCUGA    ca    gca c
|||||  || ||||||| || ||||||||||||    ||    |||  
uguuc  gc ggacucu gu uacucgucgacu    gu    ugu u
     cc  u       u  c            uauc  ---u   a 

>gso-MIR3522b (-43.10)   [gso-miR3522b:13-34]

     au  u       C  A            -Cca  ugau   g 
acagg  cg ccUGAGA CA AUGAGCAGCUGA    ca    gca c
|||||  || ||||||| || ||||||||||||    ||    |||  
uguuc  gc ggacucu gu uacucgucgacu    gu    ugu u
     cc  u       u  c            uauc  ---u   a 

>gso-MIR2218 (-47.90)   [gso-miR2218:79-100]

u        g       a    a   -           --u       u uc  uga 
 gaggaagu augggag uggg ggg ucgguaaagga   aacagcg c  ua   u
 |||||||| ||||||| |||| ||| |||||||||||   ||||||| |  ||    
 uucuuuua uAUCCUU ACCC CCU AGCCGUUuucu   uuguugu g  gu   u
u        g       -    A   U           uau       - uu  uaa 

>gso-MIR1509a (-43.60)   [gso-miR1509a:9-30]

    -cu  -             U        c --u u -u      -aagaa  u 
gcau   uc UUAAUCAAGGAAA CACGGUCG g   g g  gccgga      ag g
||||   || ||||||||||||| |||||||| |   | |  ||||||      ||  
cgug   ag aauugguuccuuu gugccagc c   c c  uggccu      uc g
    uau  c             -        u uuu u uu      cuagug  c 

>gso-MIR2109 (-54.50)   [gso-miR2109:16-36]

      u    uc    C        U          ---a     acu 
agccag gaaa  ggUG GAGUGUCU CGCCUCUGAg    gagau   a
|||||| ||||  |||| |||||||| ||||||||||    |||||    
ucgguc uuuu  ccac cucauaga gcggaggcuc    cucua   u
      u    cu    a        u          cgaa     gag 

>vvi-MIR2111 (-44.90)   [vvi-miR2111:23-43] [vvi-miR2111*:69-89]

gcaa      --  c    uc            U  U    U    auaa   uau 
    uauugg  gu agga  gggUAAUCUGCA CC GAGG CUAg    gua   c
    ||||||  || ||||  |||||||||||| || |||| ||||    |||   u
    guaacc  ca uccu  uUCAUUAGACGU GG CUCC Gauc    cgu   c
---c      gu  c    uc            U  U    U    --ga   ugc 

>lja-MIR2111 (-61.51)   [lja-miR2111:42-62] [lja-miR2111*:86-106]

      cuac       ag   -g   a   -------      uca                   U   -aa      g 
ucaaac    uuggaug  uca  uau ggu       uuagga   ggUAAUCUGCAUCCUGAGG UUA   acaaua g
||||||    |||||||  |||  ||| |||       ||||||   ||||||||||||||||||| |||   ||||||  
aguuug    aauuuac  ggu  aua cca       aauccu   CCAUUAGACGUAGGAUUCC Gau   uguuau u
      acua       ga   ag   a   cuauugu      ucg                   U   cug      u 

>bra-MIR2111a (-69.46)   [bra-miR2111a:29-49] [bra-miR2111a*:111-131]

  ga    -aa    ---         cc                    -UUU      -ugauuau       ---ac    c 
ca  ugac   guau   uggugagga  gggUAAUCUGCAUCCUGAGG    Aaagcu        acgcaua     augc g
||  ||||   ||||   |||||||||  ||||||||||||||||||||    ||||||        |||||||     ||||  
gu  auug   caug   aucauuccu  uCCAUUAGGCGUAGGGCUCC    uuucga        uguguau     uacg a
  ac    gca    cau         uc                    UGau      uaagauuu       caaua    c 

>bra-MIR2111b (-45.11)   [bra-miR2111b:14-34] [bra-miR2111b*:82-102]

     a   cu         C         U       u     g  aauuaaa    g 
gguga gaa  ggUAAUCUG AUCCUGAGG UUAaaaa uuaua gc       acau c
||||| |||  ||||||||| ||||||||| ||||||| ||||| ||       ||||  
ucauu cuu  CCAUUAGGC UAGGGCUCC Aauuuuu gguau ug       ugua a
     c   cu         A         U       u     g  -------    a 

>gga-mir-2188 (-83.94)   [gga-miR-2188:54-75]

              cu ug       ----   c  -       u   -a         A     CA   U  C       guauag 
gagguuagauggca  u  ggguuuc    cuu ug aggaaua cag  ccuguggga AGGUC  ACC CA AUGUCCU      a
||||||||||||||  |  |||||||    ||| || ||||||| |||  ||||||||| |||||  ||| || |||||||       
uucuagucuaccgu  a  uccagag    gaa ac uucuuau guc  ggacacccu uccag  ugg gu uauaggg      a
              ac gu       acgu   c  a       -   cc         a     ac   u  a       aggaau 

>gga-mir-3523 (-89.60)   [gga-miR-3523:96-117]

  -c      aa    gccga      gg ccau  u   ccu c   u   u   c g   ug            -  g  u   g 
gc  gagccg  cgga     gcggcg  g    gg gaa   g ggg gug gcg u gag  cgaggcgcugcg gg gc gcu c
||  ||||||  ||||     ||||||  |    || |||   | ||| ||| ||| | |||  |||||||||||| || || ||| a
cg  cucggc  gccu     cgccgc  c    cc cuu   c ucc cgc cgu A CUC  GCUCCGUGACGC CC cg cga g
  uc      --    acacg      aa --uu  u   --- u   u   -   c G   CU            G  g  -   g 

>gga-mir-3524 (-38.00)   [gga-miR-3524:68-89]

 ug   -u    uuaag   c  ac  a  -   a       a       c    ucua 
c  gau  aucu     guc cu  ca cc cgg ccauucu ugauucu ugau    a
|  |||  ||||     ||| ||  || || ||| ||||||| ||||||| ||||     
g  cua  uagg     cag ga  gu GG GUC GGUAAGA GCUAAGA acua    a
 gu   cc    -ucua   a  aa  c  A   -       C       C    uuga 

>gga-mir-3526 (-29.90)   [gga-miR-3526:96-114]

   cu             -cc   ----   u    auauuu    agu      uu u 
gau  cgacuuuauuuuu   ucu    uug aguu      uugg   agcugu  g c
|||  |||||||||||||   |||    ||| ||||      ||||   ||||||  |  
cUG  GUUGAAGUAGAAG   aga    gac ucaa      aacc   ucgacg  c u
   UG             UUa   cugu   c    cgaaau    cuu      cu u 

>gga-mir-3527 (-31.50)   [gga-miR-3527:63-82]

   ga  ggg ga       gg   ua  au       -  ga       uag  g 
cuc  au   g  uucuaug  gau  ca  gcgaugg uc  cuucuag   gc g
|||  ||   |  |||||||  |||  ||  ||||||| ||  |||||||   ||  
gag  ua   c  aggaugu  uug  gu  UGUUGUC GG  GGGGAUC   ug a
   ag  -aa ug       -a   gg  --       U  AG       Cgg  a 

>gga-mir-3528 (-37.80)   [gga-miR-3528:15-36]

   -uu      ----g   ---A    -  AGUC   U            ug 
gca   acacag     ucC    UGCC CC    GUG UGCAGAuauggc  u
|||   ||||||     |||    |||| ||    ||| ||||||||||||   
cgu   uguguc     agg    acgg gg    uac guguuuguaccg  a
   uuc      ggaaa   aaag    u  --au   u            ug 

>gga-mir-3529 (-48.70)   [gga-miR-3529:15-35]

       -c     aA  C     -    -C       --g    ga 
ggccgug  gcccu  GG AGACU GUGA  UUGUUGU   gugg  u
|||||||  |||||  || ||||| ||||  |||||||   ||||   
ccggcgc  cggga  cc ucuga cacu  aacaaca   uacc  g
       ca     ga  u     u    aa       aca    ga 

>gga-mir-3530 (-53.40)   [gga-miR-3530:53-73]

  a     --au       -   u               g ggcc 
ga ggcug    gcgcccg cuc gcucgcaccauugug c    g
|| |||||    ||||||| ||| ||||||||||||||| |    a
cu ccggc    cgcgGGU GGG CGAGUGUGGUAACac g    a
  c     cggu       A   U               - aaac 

>gga-mir-2964 (-43.30)   [gga-miR-2964:53-74]

          aca   -        a         guu   ac g 
aaucucugcu   gau guccagac caauucuug   cgu  g c
||||||||||   ||| |||||||| |||||||||   |||  |  
uuagagacga   cuA CAGGUUUG GUUAAGAAC   gcg  c u
          gga   A        C         -AC   -a c 

>gga-mir-3531 (-40.20)   [gga-miR-3531:16-36]

u            --c     U     G       U   gu uc 
 ugcagaucaaag   cUCCU GUUUG GUUGUAA GAa  g  g
 ||||||||||||   ||||| ||||| ||||||| |||  |   
 acgucuaguuuc   gagga caaac caacguu cuu  u  a
a            aca     -     a       c   ug ca 

>gga-mir-3525 (-41.60)   [gga-miR-3525:15-36]

      u       CA         C      G    aacu 
gucucu ucagccu  GCCAUUCUG GAUUCU UGAu    u
|||||| |||||||  ||||||||| |||||| ||||     
caggga gguuggg  ugguaagau cuaaga acua    u
      u       cc         a      g    agau 

>gga-mir-3532 (-39.30)   [gga-miR-3532:53-74]

u      cu   gu  -          gc  uu   c   au 
 gugcuu  cac  ug cacugcagcu  uc  ggg uua  u
 ||||||  |||  || ||||||||||  ||  ||| |||  a
 cacgaa  gUG  AC GUGACGUCGG  GG  ccc agu  a
a      au   GU  U          -A  UU   -   cu 

>gga-mir-3533 (-29.10)   [gga-miR-3533:46-65]

      g  -    --gu          aa  uac     acu 
gguaug ag uccu    gguauccaug  ac   cuuca   c
|||||| || ||||    ||||||||||  ||   |||||   c
ccguau uc agga    cUAUAGGUGU  UG   GAAGU   a
      g  u    augc          AG  --U     Acu 

>gga-mir-3534 (-41.90)   [gga-miR-3534:15-36]

u   acu             U GA   U   - A  U  c 
 ggg   gggggggUGUGGG U  CAG GCU G GG cu c
 |||   ||||||||||||| |  ||| ||| | || || c
 ccc   ccccucuacaccc g  guc cga c cc ga c
a   ccc             c uc   u   g c  c  a 

>gga-mir-3535 (-25.40)   [gga-miR-3535:5-29]

u       AUGAUG   -         AAAu   gau   a 
 gcuGGAU      ACU GAUUAUCUG    gcu   gaa c
 |||||||      ||| |||||||||    |||   ||| c
 cgaccua      uga cugauagau    uga   cuu a
a       --gucg   a         cucc   aau   c 

>gga-mir-3536 (-29.60)   [gga-miR-3536:7-28]

   a    ---       -A  AGA      C     - u 
gcu ugCU   GCAUACG  GU   CCCUUU ugacu c g
||| ||||   |||||||  ||   |||||| ||||| | c
cga acga   cguaugu  ca   gggaaa gcuga g c
   a    caa       aa  ggg      u     u u 

>gga-mir-3537 (-46.80)   [gga-miR-3537:9-31]

  u      U     --CU     AU     -U       c 
gg ggaggG GAGUG    GUAGG  GGGGC  Cccggcc u
|| |||||| |||||    |||||  |||||  |||||||  
cc ccuucc cucac    cgucc  ccucg  gggucgg a
  -      -     uccc     --     uc       c 

>gga-mir-3538-1 (-31.80)   [gga-miR-3538:4-24]

     UC  U     -AA -      --a  a      g 
gcaGU  GG GAUGA   C CAUGGA   ua gcgcug g
|||||  || |||||   | ||||||   || ||||||  
cgucg  cc uuacu   g gugccu   gu cgcgac c
     ua  -     gag a      aca  c      a 

>gga-mir-3538-2 (-31.40)   [gga-miR-3538:4-24]

     UC  U     -AA -      --a  a      g 
gcaGU  GG GAUGA   C CAUGGA   ua gcgcug g
|||||  || |||||   | ||||||   || ||||||  
cgucg  cc uugcu   g gugccu   gu cgcgac c
     ua  -     gag a      aca  c      a 

>gga-mir-3539 (-27.90)   [gga-miR-3539:8-29]

      gC      A   -   U  U     uu  u 
cuccuu  AGAGGA GAC UGA GC AGUUa  ug u
||||||  |||||| ||| ||| || |||||  || u
gagggg  ucuccu cug acu cg ucagu  ac c
      -a      c   u   c  -     -c  c 

>gga-mir-3540 (-32.60)   [gga-miR-3540:6-27]

aggaaAU      A   CA     -     gcg 
       GGUGGA GAA  AGGCC UGCcc   a
       |||||| |||  ||||| |||||   g
       ccaccu cuu  uccgg acggg   g
------u      c   cg     g     aau 

>cin-mir-1 (-31.70)   [cin-miR-1-5p:1-20] [cin-miR-1-3p:74-95]

--ACC             C      gac    aaua   ug    a  uu 
     UACUUCUUUACAU UUCaua   uaag    ccg  gcug ca  u
     ||||||||||||| ||||||   ||||    |||  |||| ||  c
     AUGAAGAAAUGUA AGGUau   auuc    ggc  ugac gu  a
UGCGU             -      ---    -aac   cu    -  ua 

>cin-mir-3575 (-21.50)   [cin-miR-3575-5p:1-20] [cin-miR-3575-3p:39-60]

--       UU    G C     ua  -  c 
  AUCACCA  ACCA G AGUAu  ga ca a
  |||||||  |||| | |||||  || || c
  UAGUGGU  UGGU C UCAUA  cu gu a
CU       --    G A     Gc  c  a 

>cin-mir-9 (-20.40)   [cin-miR-9-5p:1-20]

U          CC      A   cac 
 CUUUGGUUAU  AGUUUG ugc   a
 ||||||||||  |||||| |||    
 gaaaccagua  ucaggc acg   c
u          aa      c   uca 

>cin-mir-15 (-18.70)   [cin-miR-15-5p:1-20] [cin-miR-15-3p:34-53]

U      A    -      U  uuuu 
 AGCAGC CACA AAACUA Ca    c
 |||||| |||| |||||| ||     
 UCGUCG GUGU UUUGGU gu    u
U      A    C      C  uuaa 

>cin-mir-3598 (-20.50)   [cin-miR-3598-5p:1-20] [cin-miR-3598-3p:38-57]

U   A    UU         c   -g  a 
 CAC GUGG  AUAUACUGC ugu  gu u
 ||| ||||  ||||||||| |||  ||  
 GUG UACC  UAUAUGACG Aca  ca u
C   C    --         U   ag  u 

>cin-mir-29 (-20.90)   [cin-miR-29-5p:1-20] [cin-miR-29-3p:40-59]

     CUC  UU      A   -    gu 
ACCGU   CU  UGGUGC Gga guuu  a
|||||   ||  |||||| ||| ||||   
UGGUA   GA  ACCACG Ucu caag  u
     AAA  UU      A   a    ua 

>cin-mir-96 (-20.90)   [cin-miR-96-5p:1-20] [cin-miR-96-3p:34-53]

UUU        CA  AU      uc 
   GGCACUUG  CA  AUUgau  g
   ||||||||  ||  ||||||  a
   CCGUGAAC  GU  UAAcua  c
CAU        AG  CU      ug 

>cin-mir-125 (-19.30)   [cin-miR-125-5p:1-21] [cin-miR-125-3p:32-49]

UCC      C  U  A          
   CUGAGA CC AA ACGUGagac 
   |||||| || || |||||||| g
   GACUCU GG UU UGCAcuuug 
--U      C  C  A          

>cin-mir-3599 (-19.30)   [cin-miR-3599-5p:1-20] [cin-miR-3599-3p:30-49]

A   G     C         g u 
 ACA UGACA CAUGUAUUG c c
 ||| ||||| ||||||||| | c
 UGU GCUGU GUAUAUAGC g g
G   A     A         g u 

>cin-mir-135 (-18.60)   [cin-miR-135-5p:1-22] [cin-miR-135-3p:35-57]

---U       U    UC     U  c uc 
    AUGGCUU CUUU  CUGUG Ga g  a
    ||||||| ||||  ||||| || |   
    UACCGAA GAAA  GACAC cu c  u
CUAU       U    -U     U  - ua 

>cin-mir-182 (-27.40)   [cin-miR-182-5p:1-20] [cin-miR-182-3p:44-63]

C              AA     gu     g    
 UUGGCAAAAUAUAG  CUCac  uggau uua 
 ||||||||||||||  |||||  ||||| || a
 AGCCGUUUUAUGUC  GGGUG  accua agu 
C              --     --     g    

>cin-mir-196 (-29.10)   [cin-miR-196-5p:1-20] [cin-miR-196-3p:32-53]

--     A                au 
  UAGGU GUUUAAAGUUGUGGag  u
  ||||| ||||||||||||||||  u
  GUCCG CGGAUUUCGACACCuc  g
UC     G                ag 

>cin-mir-367 (-18.30)   [cin-miR-367-5p:1-20] [cin-miR-367-3p:37-56]

AG        --        G   uaaua 
  UGCUAUUC  AUGUGCAA Agu     c
  ||||||||  |||||||| |||      
  AUGGUAAG  UACACGUU Ucg     a
--        GU        A   ugccg 

>cin-mir-375 (-25.70)   [cin-miR-375-5p:1-20] [cin-miR-375-3p:64-83]

    U     C    U   A    cauuauuguucuggcg 
ACGU GGUCG ACGA CAA gcgu                u
|||| ||||| |||| ||| ||||                c
UGCG UCGGC UGCU GUU cgua                a
    C     U    U   C    aaauacugcguuaauu 

>cin-mir-4220 (-19.80)   [cin-miR-4220-5p:1-22] [cin-miR-4220-3p:34-53]

          -U    U      cug 
UAGUGCAAUU  GUUG AGCUUG   u
||||||||||  |||| ||||||   u
GUCACGUUAA  UAAC UCGAac   a
          CU    -      uua 

>cin-mir-92e (-21.10)   [cin-miR-92e-5p:1-20] [cin-miR-92e-3p:33-52]

    G    UG      -   a  g 
CGGU UGGG  GGUGCA UGA uc u
|||| ||||  |||||| ||| || u
GUCA AUCC  UCACGU AUu ag g
    G    CU      U   a  u 

>cin-mir-92d (-17.80)   [cin-miR-92d-5p:1-20] [cin-miR-92d-3p:37-56]

-     U UUU      UC     uaag 
 GGUCG G   GGUGUA  AUacu    c
 ||||| |   ||||||  |||||    a
 CCGGC C   CCACGU  UAUga    a
G     C UGU      --     caca 

>cin-mir-132-2 (-22.50)   [cin-miR-132-5p:1-22]

      UUUU    UC          auu 
UAUGGC    ACAU  CUGUGUguau   a
||||||    ||||  ||||||||||   a
guaccg    ugua  gacacacaug   u
      ---u    -u          acg 

>cin-mir-4000c (-16.70)   [cin-miR-4000c-5p:1-20] [cin-miR-4000c-3p:33-52]

U     U  CG  G     G  acu 
 GAAAC UG  UG AACGG cc   c
 ||||| ||  || ||||| ||   u
 CUUUG AC  AU UUGCC Gg   g
G     U  AA  G     -  acc 

>cin-mir-4000d (-16.90)   [cin-miR-4000d-5p:1-20] [cin-miR-4000d-3p:34-52]

U        CAA   C    c    u 
 GAAACUUG   GAA GGGC uugu c
 ||||||||   ||| |||| ||||  
 CUUUGGAC   CUU CCUG aaca u
-        AAC   U    -    a 

>cin-mir-4000a-1 (-22.10)   [cin-miR-4000a-5p:1-20] [cin-miR-4000a-3p:34-55]

--C    C          C      uua 
   GAAA UUGCGUGGAA AGGcug   g
   |||| |||||||||| ||||||    
   CUUU AAUGUACUUU UCCGac   a
UAC    A          -      cua 

>cin-mir-4000b-1 (-23.40)   [cin-miR-4000b-5p:1-20] [cin-miR-4000b-1-3p:34-54]

-U        CA    C    c    u 
  GAAACUUG  GGAA GGGC uugu c
  ||||||||  |||| |||| ||||  
  CUUUGGAC  CCUU CCUG aacg u
CG        AA    U    -    a 

>cin-mir-4000e (-35.70)   [cin-miR-4000e-5p:1-20] [cin-miR-4000e-3p:65-84]

U         UC   AC       ---u ua       au  u 
 GAAACUUCU  GGA  AGGccgg    u  aaaucuu  cc a
 |||||||||  |||  |||||||    |  |||||||  || u
 CUUUGGAGG  UCU  UCCGGcc    a  uuuggaa  gg a
A         -C   -C       cuuu gc       cg  u 

>cin-mir-4000a-3 (-18.70)   [cin-miR-4000a-5p:1-20] [cin-miR-4000a-3-3p:34-55]

--C    C          C      uuu 
   GAAA UUGCGUGGAA AGGcug   g
   |||| |||||||||| ||||||    
   CUUU AAUGUGCUUU UCCGac   a
UAC    A          -      cua 

>cin-mir-4000a-2 (-22.10)   [cin-miR-4000a-5p:1-20] [cin-miR-4000a-3p:34-55]

--C    C          C      uua 
   GAAA UUGCGUGGAA AGGcug   g
   |||| |||||||||| ||||||    
   CUUU AAUGUACUUU UCCGac   a
UAC    A          -      cua 

>cin-mir-4000f (-24.20)   [cin-miR-4000f-5p:1-20] [cin-miR-4000f-3p:32-51]

          CUG      Gc      
UGAAACUUCG   GAACAG  cgggu 
||||||||||   ||||||  |||| g
AUUUUGAAGC   CUUGUC  Gccca 
          --A      GA      

>cin-mir-4000g (-18.80)   [cin-miR-4000g-5p:1-20] [cin-miR-4000g-3p:31-50]

      U    U    A         
UGAAAC UCUU AGAA GGGccugc 
|||||| |||| |||| ||||||| u
AUUUUG AGGA UCUU CUCGgauu 
      C    -    A         

>cin-mir-4000h (-23.80)   [cin-miR-4000h-5p:1-20] [cin-miR-4000h-3p:32-53]

--U         UU  U    G   gu 
   GAAACUUGC  AG ACGG ccu  a
   |||||||||  || |||| |||   
   UUUUGAACG  UC UGCC Gga  g
UUG         UU  U    -   au 

>cin-mir-4000b-2 (-16.30)   [cin-miR-4000b-5p:1-20] [cin-miR-4000b-2-3p:34-52]

U        CA    C    c    c 
 GAAACUUG  GGAA GGGC uugu c
 ||||||||  |||| |||| ||||  
 CUUUGGAC  CUUU UCUG aaca c
-        AA    U    -    a 

>cin-mir-4000i (-20.30)   [cin-miR-4000i-5p:1-20] [cin-miR-4000i-3p:34-53]

-            GG    GG   acg 
 UGAAACUUGCAA  AACA  ccu   a
 ||||||||||||  ||||  |||    
 AUUUUGAACGUU  UUGU  Ggg   u
A            -A    -A   cuu 

>cin-mir-4001a-1 (-13.50)   [cin-miR-4001a-5p:1-20] [cin-miR-4001a-1-3p:34-52]

UG       UA    CA     cuu 
  GAACUUA  CGAA  GGCug   u
  |||||||  ||||  |||||   g
  UUUGAAU  GCUU  CUGgc   u
-A       UC    CA     uca 

>cin-mir-4001i (-22.40)   [cin-miR-4001i-5p:1-20] [cin-miR-4001i-3p:34-53]

-A    CUU   AA   A      aac 
  GGAA   CCC  GGA CAGgcu   c
  ||||   |||  ||| ||||||    
  CCUU   GGG  CCU GUCCga   u
AG    -AC   CC   -      cgu 

>cin-mir-4002 (-27.30)   [cin-miR-4002-5p:1-20] [cin-miR-4002-3p:34-53]

UUU              U     aa 
   GAACUUGUACGAAU GGcug  c
   |||||||||||||| |||||  a
   CUUGAAUAUGCUUG CCgac  g
AAC              U     ac 

>cin-mir-4001a-2 (-22.40)   [cin-miR-4001a-5p:1-20] [cin-miR-4001a-2-3p:32-51]

UG      A      CA     ug 
  GAACUU UACGAA  GGCug  c
  |||||| ||||||  |||||  u
  CUUGAA AUGCUU  CCGac  g
AA      C      AA     uu 

>cin-mir-4001c (-23.20)   [cin-miR-4001c-5p:1-20] [cin-miR-4001c-3p:40-59]

-C    C      A G        uaau  a 
  GGAA UUUCCA G AACAGgcu    gc u
  |||| |||||| | ||||||||    || a
  CCUU AAGGGU C UUGUCCgg    ug u
AC    -      - G        ---c  a 

>cin-mir-4001d (-19.60)   [cin-miR-4001d-5p:1-20] [cin-miR-4001d-3p:38-59]

--U      U    U  A       caacc 
   GGAACU GUUU GA CAGGcuu     a
   |||||| |||| || |||||||      
   UCUUGA CAAA CU GUCCGag     g
UGC      U    -  C       uacca 

>cin-mir-4001e (-15.70)   [cin-miR-4001e-5p:1-20] [cin-miR-4001e-3p:32-49]

UG        UU   ACA      a 
  GAACUUAU  UGA   GGcugu u
  ||||||||  |||   |||||| a
  UUUGAAUA  ACU   UCGAca a
--        -U   -AG      a 

>cin-mir-4001f (-38.20)   [cin-miR-4001f-5p:1-20] [cin-miR-4001f-3p:80-99]

U   A      A  G        -ug    -    ---         uuuu 
 GGA CUUACU AU AACAGgcu   ugua cagc   uuagcacua    c
 ||| |||||| || ||||||||   |||| ||||   |||||||||    g
 CCU GAAUGA UG UUGUCCga   auau guug   gaucguggu    a
A   C      A  -        caa    a    cuc         ugua 

>cin-mir-4001g (-16.00)   [cin-miR-4001g-3p:50-69]

            uu a   g     c   uuguu 
cuuguuuaggau  g uuc guuuu uag     u
||||||||||||  | ||| ||||| |||      
GGACAGGUUUUA  C AAG Uaaaa guc     u
            UU -   G     u   uaaag 

>cin-mir-4001b-1 (-18.63)   [cin-miR-4001b-5p:1-20] [cin-miR-4001b-1-3p:43-61]

--   -        -U   C    uguacac 
  UGG AACUUGCA  GAA AGGC       a
  ||| ||||||||  ||| ||||       c
  ACC UUGAACGU  UUU uccg       a
AC   A        UU   u    ccuuagc 

>cin-mir-4001h (-17.30)   [cin-miR-4001h-5p:1-20] [cin-miR-4001h-3p:31-50]

UG  A    U     CG     uu 
  GA CUUA GCGAA  GGCug  c
  || |||| |||||  |||||   
  CU GAAU UGCUU  CUGac  c
AA  C    U     AA     ug 

>cin-mir-4001b-2 (-20.40)   [cin-miR-4001b-5p:1-20] [cin-miR-4001b-2-3p:33-51]

U   A    CAU          uuu 
 GGA CUUG   GAACAGGCug   a
 ||| ||||   ||||||||||    
 CCU GAAC   UUUGUCUGac   u
-   G    CAU          uua 

>cin-mir-4003a-1 (-21.60)   [cin-miR-4003a-5p:1-20] [cin-miR-4003a-3p:39-58]

UGA        UAC        -gg   u 
   GUUGGUUA   AUUCUUgc   uau a
   ||||||||   ||||||||   |||  
   CAACCAAU   UAAGAACg   aug a
ACA        -UU        aca   a 

>cin-mir-4005a (-25.00)   [cin-miR-4005a-5p:1-20] [cin-miR-4005a-3p:35-55]

-U           A  AUA      uau 
  GAGUUGGUGCU UC   CUugug   u
  ||||||||||| ||   ||||||    
  UUCGACCAUGA AG   GAACac   a
GU           A  --G      ugc 

>cin-mir-4003c (-15.80)   [cin-miR-4003c-5p:1-20] [cin-miR-4003c-3p:36-55]

U A    GU  U         aa   a 
 G GUUG  UA CAUUGUUGc  ugu a
 | ||||  || |||||||||  ||| g
 C UAAC  AU GUAGCAAUg  aca u
A G    UG  U         --   a 

>cin-mir-4003a-2 (-21.70)   [cin-miR-4003a-5p:1-20] [cin-miR-4003a-3p:41-60]

UGA        UAC        ---g    u 
   GUUGGUUA   AUUCUUgc    auau u
   ||||||||   ||||||||    ||||  
   CAACCAAU   UAAGAACg    uaug a
ACA        -UU        auaa    a 

>cin-mir-4003a-3 (-20.60)   [cin-miR-4003a-5p:1-20] [cin-miR-4003a-3p:41-60]

UGA        UAC        -ag   uu 
   GUUGGUUA   AUUCUUgc   uau  a
   ||||||||   ||||||||   |||   
   CAACCAAU   UAAGAACg   aua  a
ACA        -UU        aua   ug 

>cin-mir-4005b (-26.10)   [cin-miR-4005b-5p:1-20] [cin-miR-4005b-3p:35-54]

U           A  A G      uau 
 GAGUUGGUGCU UC U CUugug   u
 ||||||||||| || | ||||||    
 CUCGACCAUGA AG G GAACac   a
U           -  - G      ugc 

>cin-mir-4003a-4 (-21.60)   [cin-miR-4003a-5p:1-20]

UGA        UAC        -gg   u 
   GUUGGUUA   AUUCUUgc   uau c
   ||||||||   ||||||||   |||  
   cgaccaau   uaagaacg   aug a
aca        -uu        aca   a 

>cin-mir-4003b (-24.24)   [cin-miR-4003b-5p:1-23] [cin-miR-4003b-3p:38-59]

--UGA         U         Gauauu 
     GUUGGUUAU CAAUCUUGC      u
     ||||||||| |||||||||       
     CAACCAAUG GUUAGAACg      a
AAUCA         -         augaca 

>cin-mir-4004 (-11.30)   [cin-miR-4004-5p:1-21]

G      U  U    ---U    Ucca 
 UGAGUU GU GUAU    GUGG    u
 |||||| || ||||    ||||     
 acucaa ca caua    cacu    g
a      -  u    uauu    gucg 

>cin-mir-4006b (-19.30)   [cin-miR-4006b-5p:1-20] [cin-miR-4006b-3p:31-50]

U G        C    G     cg 
 G AACAUGUA GUAA GGCug  u
 | |||||||| |||| |||||   
 C UUGUAUAU CAUU UCGac  u
A G        U    A     cu 

>cin-mir-4006c (-19.20)   [cin-miR-4006c-5p:1-20] [cin-miR-4006c-3p:32-51]

U        U         C   u 
 GGAACAUG AAAUAAGGG ugu u
 |||||||| ||||||||| ||| a
 CUUUGUAU UUUGUUUCC acg u
A        C         U   c 

>cin-mir-4006d (-24.90)   [cin-miR-4006d-5p:1-20] [cin-miR-4006d-3p:35-54]

-UG     UA   G          ug 
   GAACA  CAG UAAGGGCugc  u
   |||||  ||| ||||||||||  c
   CUUGU  GUC AUUUCUgacg  a
AAA     GG   A          cu 

>cin-mir-4006a-1 (-16.10)   [cin-miR-4006a-5p:1-20] [cin-miR-4006a-1-3p:30-49]

UG   -    U      G     u 
  GAA CAUG AAGUAA GGCug c
  ||| |||| |||||| ||||| a
  CUU GUAC UUUAUU CUGac a
-A   C    U      A     a 

>cin-mir-4006e (-18.10)   [cin-miR-4006e-5p:1-20] [cin-miR-4006e-3p:30-47]

UG        UC U        g 
  GAACAUGA  G AAGGGCug c
  ||||||||  | |||||||| g
  CUUGUAUU  C UUCCUGac g
--        CC U        u 

>cin-mir-4006a-2 (-23.90)   [cin-miR-4006a-5p:1-20] [cin-miR-4006a-2-3p:33-53]

-          AA    G      cc 
 UGGAACAUGU  GUAA GGCugc  a
 ||||||||||  |||| ||||||   
 AUUUUGUACA  CAUU CUGacg  u
C          AC    G      ug 

>cin-mir-4006a-3 (-17.50)   [cin-miR-4006a-5p:1-20] [cin-miR-4006a-3-3p:32-51]

U        U      G   ugua 
 GGAACAUG AAGUAA GGC    u
 |||||||| |||||| |||    u
 CUUUGUAC UUCAUU CUG    a
A        C      A   ucuu 

>cin-mir-4006f (-18.50)   [cin-miR-4006f-5p:1-20] [cin-miR-4006f-3p:31-53]

---UG     U    G      C  uu 
     GAACA GCAG UAAGGG ug  u
     ||||| |||| |||||| ||   
     UUUGU UGUC AUUCCC ac  c
CAAAA     C    A      A  cc 

>cin-mir-4006g (-16.20)   [cin-miR-4006g-5p:1-20] [cin-miR-4006g-3p:31-50]

GG       CC  U      c  a 
  GAACAUU  GG AAGGGA gu u
  |||||||  || |||||| || u
  CUUGUAA  CC UUCCUU ca u
-G       CA  U      U  a 

>cin-mir-4007 (-13.34)   [cin-miR-4007-5p:1-20]

U   -     -   AAU      guaguu 
 UGA CUUUC AAG   UAGGUu      u
 ||| ||||| |||   ||||||       
 acu gaaag uuc   auccaa      u
a   u     a   cuu      auuugg 

>cin-mir-1502a (-15.54)   [cin-miR-1502a-5p:1-20] [cin-miR-1502a-3p:40-59]

-    A     U     A      uaaacc 
 UUGA CUUUC AAGGA UAGguu      a
 |||| ||||| ||||| ||||||       
 AACU GAAAG UUCUU AUCCaa      a
C    -     -     A      caucaa 

>cin-mir-1502b (-17.20)   [cin-miR-1502b-5p:1-20] [cin-miR-1502b-3p:38-57]

-      UU   AC      G     caua 
 UGAACU  ACC  GAAAAG ucugu    u
 ||||||  |||  |||||| |||||     
 ACUUGA  UGG  CUUUUC AGAca    a
C      --   -A      -     caau 

>cin-mir-1502c (-25.50)   [cin-miR-1502c-5p:1-20] [cin-miR-1502c-3p:38-57]

U     UUA          G     uaau 
 GAACU   CCAUGAAAAA ccugu    u
 |||||   |||||||||| |||||     
 CUUGA   GGUACUUUUU GGAcg    g
G     ---          G     uaaa 

>cin-mir-1502d (-22.30)   [cin-miR-1502d-5p:1-20] [cin-miR-1502d-3p:40-59]

-U    UU    A   A       uu uuu 
  GAAC  UCCC GGA UAAGucu  c   g
  ||||  |||| ||| |||||||  |    
  CUUG  AGGG CCU AUUCAga  g   u
CU    --    C   C       cu uau 

>cin-mir-4008a (-21.70)   [cin-miR-4008a-5p:1-20] [cin-miR-4008a-3p:41-60]

U     UAUGC   A U          u  aa 
 GGCAG     GCA G UAGgcccuuu gu  u
 |||||     ||| | |||||||||| ||   
 CCGUC     UGU C AUUUGGGAaa ca  a
A     -----   C U          -  gu 

>cin-mir-4008b (-26.50)   [cin-miR-4008b-5p:1-20] [cin-miR-4008b-3p:44-62]

U     UGAUC   A     c       aaca  u 
 GGCAG     GCA GUUAG gcccugu    gc u
 |||||     ||| ||||| |||||||    ||  
 CCGUC     CGU CGAUC UGGGAca    cg a
-     -----   C     -       ---a  a 

>cin-mir-4008c (-25.30)   [cin-miR-4008c-5p:1-20] [cin-miR-4008c-3p:43-62]

U     UGAUC    G     g      ---  u 
 GGCAG     GCAA UUAGu cccugu   ug u
 |||||     |||| ||||| ||||||   || u
 CCGUC     CGUU AAUCG GGGAca   ac u
A     -----    A     -      uau  g 

>cin-mir-4009a (-18.70)   [cin-miR-4009a-5p:1-20] [cin-miR-4009a-3p:34-53]

--   U UC         G   uauu 
  GGU U  CAUGUGUAA AGC    a
  ||| |  ||||||||| |||    u
  CCA G  GUACACGUU Ucg    g
AA   U UU         A   uauc 

>cin-mir-4009b (-18.40)   [cin-miR-4009b-5p:1-20] [cin-miR-4009b-3p:32-52]

--        U     U   G   aa 
  GGUAUGUU AGUGU CAA Agc  g
  |||||||| ||||| ||| |||  c
  CCAUGUAA UCACA GUU Ucg  a
UC        -     C   A   au 

>cin-mir-4009c (-15.90)   [cin-miR-4009c-3p:34-53]

      c    -u    cc   uuau 
gguaca ugaa  ugca  agc    u
|||||| ||||  ||||  |||     
CCAUGU AUUU  ACGU  Ucg    a
      C    UC    UA   ucuu 

>cin-mir-4010-1 (-21.00)   [cin-miR-4010-5p:1-20] [cin-miR-4010-3p:43-62]

AAC     U   G     A    auga   a 
   GUAUG CGA CAAAC Uugc    guc u
   ||||| ||| ||||| ||||    ||| c
   CAUAC GCU GUUUG AACg    cag a
CUU     C   -     -    -gua   u 

>cin-mir-4010-2 (-21.00)   [cin-miR-4010-5p:1-20] [cin-miR-4010-3p:43-62]

AAC     U   G     A    auga   a 
   GUAUG CGA CAAAC Uugc    guc u
   ||||| ||| ||||| ||||    ||| c
   CAUAC GCU GUUUG AACg    cag a
CUU     C   -     -    -gua   u 

>cin-mir-4011a (-24.84)   [cin-miR-4011a-5p:1-20] [cin-miR-4011a-3p:39-58]

CA        -            gugaau 
  CAGUGGAG GUAAAGAUUGug      u
  |||||||| ||||||||||||       
  GUCACCUU CGUUUUUAGCac      u
-C        U            aaguaa 

>cin-mir-4011b (-19.40)   [cin-miR-4011b-5p:1-20] [cin-miR-4011b-3p:37-56]

-UC        G  A    UU     gug 
   ACAGUGGA GU UACC  guugu   a
   |||||||| || ||||  |||||    
   UGUCACUU CG AUGG  CAaca   c
CAA        A  -    --     aug 

>cin-mir-4012-1 (-20.40)   [cin-miR-4012-5p:1-20]

A         --U    U         g    u 
 AGCUUAUGU   CAUG AUGCugugu uaua a
 |||||||||   |||| ||||||||| ||||  
 ucgagugua   guau uacgacaug gugu u
a         uau    -         -    g 

>cin-mir-4012-2 (-20.42)   [cin-miR-4012-5p:1-20] [cin-miR-4012-3p:41-59]

A         U    U        uguau 
 AGCUUAUGU CAUG AUGCugug     a
 ||||||||| |||| ||||||||     u
 UCGAGUGUA GUAU UACGAcau     a
-         U    -        ggugu 

>cin-mir-4013a (-22.10)   [cin-miR-4013a-5p:1-20] [cin-miR-4013a-3p:35-54]

AGA      A       AUGcgu   u 
   CUUGUA UAGCAGC      cgg u
   |||||| |||||||      ||| a
   GAACGU AUCGUCG      gcc a
CCC      A       ---GAU   a 

>cin-mir-4013b (-15.90)   [cin-miR-4013b-5p:1-20] [cin-miR-4013b-3p:32-49]

UUA     U   A    A    uu 
   CUUGC UUA CAGU UGcg  a
   ||||| ||| |||| ||||  u
   GAACG AAU GUCG AUgc  u
--C     U   C    G    ua 

>cin-mir-4014-1 (-19.70)   [cin-miR-4014-1-5p:1-20] [cin-miR-4014-3p:35-54]

GC      GA         C   aau 
  UACGCA  CUUUCUGUA ugu   u
  ||||||  ||||||||| |||    
  GUGUGU  GAAAGACAU aca   u
GU      GC         U   aag 

>cin-mir-4014-2 (-18.80)   [cin-miR-4014-2-5p:1-20] [cin-miR-4014-3p:33-52]

G   -    A        G    uua 
 CAC CACG GCUUUUUG AAug   a
 ||| |||| |||||||| ||||    
 GUG GUGU CGAAAGAC UUac   c
-   U    G        A    uug 

>cin-mir-4015-1 (-16.20)   [cin-miR-4015-5p:1-20] [cin-miR-4015-3p:31-50]

  A     A       UC    ug 
AC AUGAA UUAACCU  UCug  a
|| ||||| |||||||  ||||   
UG UACUU AGUUGGA  GGac  c
  C     A       UA    ug 

>cin-mir-4015-2 (-16.20)   [cin-miR-4015-5p:1-20] [cin-miR-4015-3p:31-50]

  A     A       UC    ug 
AC AUGAA UUAACCU  UCug  a
|| ||||| |||||||  ||||   
UG UACUU AGUUGGA  GGac  c
  C     A       UA    ug 

>cin-mir-4016-1 (-20.10)   [cin-miR-4016-3p:65-83]

ucaaacuuauuuucau          g     --    uau   aa 
                gauuauagaa agaaa  ugau   agg  g
                |||||||||| |||||  ||||   |||   
                CUAGUGUCUU Uuuuu  acug   ucc  a
---------GGAAAUU          G     ug    ucu   ag 

>cin-mir-4016-2 (-21.06)   [cin-miR-4016-5p:1-19]

U   C              acgaga 
 GUU UGUGAUCUUAAAGG      c
 ||| ||||||||||||||      a
 caa acacuagaauuucc      g
a   a              aaaaca 

>cin-mir-4017-1 (-20.90)   [cin-miR-4017-5p:1-20] [cin-miR-4017-3p:36-55]

-U UG              C  uguau 
  G  CUGUAUAUGCACUU Ua     u
  |  |||||||||||||| ||      
  C  GGUAUGUACGUGAA au     u
AU GU              U  uuuaa 

>cin-mir-4017-2 (-20.90)   [cin-miR-4017-5p:1-20] [cin-miR-4017-3p:36-55]

-U UG              C  uguau 
  G  CUGUAUAUGCACUU Ua     u
  |  |||||||||||||| ||      
  C  GGUAUGUACGUGAA au     u
AU GU              U  uuuaa 

>cin-mir-4019 (-24.30)   [cin-miR-4019-5p:1-20] [cin-miR-4019-3p:34-53]

G  U      -C      A    aga 
 GG GCAUUG  GGAGCG GCug   u
 || ||||||  |||||| ||||    
 CC UGUAAC  CCUUGC Cgac   c
G  U      AA      C    aug 

>cin-mir-4018a (-23.60)   [cin-miR-4018a-5p:1-20] [cin-miR-4018a-3p:34-53]

C  AA      U   A       uac 
 GG  CAUUGU GGA CGGGcug   g
 ||  |||||| ||| |||||||    
 CC  GUAACG CCU GCUCGac   a
C  AC      -   C       ucu 

>cin-mir-4018b (-35.00)   [cin-miR-4018b-5p:1-20] [cin-miR-4018b-3p:58-77]

A     AUU           g    uu ----aa     uc 
 GGAAC   CUGUGGAACGG cugg  u      accgg  u
 |||||   ||||||||||| ||||  |      |||||   
 CCUUG   GGCACUUUGUC GAcc  g      uggcc  g
A     --C           -    uu ggcuua     ua 

>cin-mir-4020a (-13.80)   [cin-miR-4020a-5p:1-18]

UGU       -UUG  G -       uguu   a 
   GGUUAAG    GU C Aaaugau    aca u
   |||||||    || | |||||||    ||| a
   ccgauuc    ca g uuuauua    ugu c
uuu       caaa  g a       ---u   u 

>cin-mir-4020b (-19.10)   [cin-miR-4020b-5p:1-20] [cin-miR-4020b-3p:45-64]

-      ---U   -UU     -   a    guu 
 GUGUGG    UGG   GGUGG UUG uggc   c
 ||||||    |||   ||||| ||| ||||   u
 CACGCC    ACU   CCAcu aac auug   a
A      CCUU   UAC     u   -    aau 

>cin-mir-4021 (-18.60)   [cin-miR-4021-5p:1-20] [cin-miR-4021-3p:38-57]

GU   U           AAA       a 
  ACG ACGUCAUAAUA   uauugug g
  ||| |||||||||||   |||||||  
  UGC UGCAGUGUUAU   Auaaugc g
AU   -           GAA       u 

>cin-mir-4022 (-6.10)   [cin-miR-4022-3p:34-53]

----u       ag    u     uu u 
     guauaag  ucau guuaa  g u
     |||||||  |||| |||||  | c
     UAUAUUU  AGUA UAAuu  u a
ACAUU       -G    -     uu u 

>cin-mir-4023 (-8.10)   [cin-miR-4023-3p:37-56]

guuu     uu   u    u ca   uac 
    guuug  uuu uaca c  agu   a
    |||||  ||| |||| |  |||    
    CAAAC  AAA GUGU G  Uca   a
----     UU   U    U AA   uua 

>cin-mir-4024 (-21.60)   [cin-miR-4024-5p:1-19] [cin-miR-4024-3p:56-75]

UUU       G          uacauagcaacaugca 
   GUAGGAU AAAAGGUGaa                c
   ||||||| ||||||||||                c
   UAUCCUA UUUUCUACUU                a
--G       G          Uuauauuuaaauuaua 

>cin-mir-4025 (-11.02)   [cin-miR-4025-5p:1-20]

GUAU   UU    --          uuuca 
    GUG  UGGU  GAAAAGAauu     a
    |||  ||||  ||||||||||     a
    cau  acca  uuuuucuuga     a
----   cu    aa          ucuaa 

>cin-mir-4026 (-24.20)   [cin-miR-4026-5p:1-20] [cin-miR-4026-3p:31-50]

-   A             UU   ac 
 GUA GUGAUGACGUCAU  Gac  g
 ||| |||||||||||||  |||  u
 CAU CAUUACUGCAGUA  CUg  c
G   -             -U   ca 

>cin-mir-4027 (-18.10)   [cin-miR-4027-5p:1-20] [cin-miR-4027-3p:72-91]

GU          CA         ua   au   -u        cg 
  UGAACAUAAA  UAAUAUaaa  aau  auu  uauuuuag  g
  ||||||||||  |||||||||  |||  |||  ||||||||  u
  ACUUGUAUUU  AUUAUAUuu  uua  uaa  auaaaguu  a
-G          UC         ug   ac   uc        ua 

>cin-mir-4028 (-16.80)   [cin-miR-4028-3p:35-54]

u     -c     c ug       auu 
 gcaac  cagca u  uuaauau   g
 |||||  ||||| |  |||||||    
 CGUUG  GUUGU A  AAUUaua   u
A     UU     - GU       gau 

>cin-mir-4029 (-23.30)   [cin-miR-4029-5p:1-20] [cin-miR-4029-3p:35-54]

A       -ACU           auu 
 AAGUGCA    GUGUAAACCug   a
 |||||||    |||||||||||   u
 UUCACGU    UACAUUUGgac   a
A       ACGU           guc 

>cin-mir-4030 (-21.60)   [cin-miR-4030-5p:1-20] [cin-miR-4030-3p:33-52]

A   U   AC            uaa 
 AAG GCA  UUUGAUAGUGug   c
 ||| |||  ||||||||||||    
 UUC CGU  AGACUAUCGCac   u
A   U   GU            cuc 

>cin-mir-4031 (-21.00)   [cin-miR-4031-5p:1-20] [cin-miR-4031-3p:35-54]

    A    U   CG   A   uuaa 
CCCA AGUG CGG  CAU Uuc    a
|||| |||| |||  ||| |||     
GGGU UCGC GCC  GUA Aag    u
    C    U   AU   C   ccaa 

>cin-mir-4032 (-23.40)   [cin-miR-4032-5p:1-20] [cin-miR-4032-3p:36-55]

AC          G  UU       gua 
  ACAGUGAUGA AG  AGCuggu   u
  |||||||||| ||  |||||||   a
  UGUUACUGCU UC  UCGACcg   a
UA          A  --       ucu 

>cin-mir-4033 (-20.40)   [cin-miR-4033-5p:1-20] [cin-miR-4033-3p:36-55]

-       AAU     G      uggc 
 GGAGCAC   AUGUA UUUAug    u
 |||||||   ||||| ||||||    u
 CCUCGUG   UACGU GAAUac    a
A       CGU     -      uuuu 

>cin-mir-4034 (-20.50)   [cin-miR-4034-5p:1-20] [cin-miR-4034-3p:36-55]

-G A       CU         --   c 
  C CAGUGCU  AGGAAAGUa  aag u
  | |||||||  |||||||||  |||  
  G GUCACGG  UCUUUUCau  uuc c
GA C       UC         gc   a 

>cin-mir-4035 (-20.30)   [cin-miR-4035-5p:1-23] [cin-miR-4035-3p:38-57]

G     A     A   G      auuua 
 GCAAU UCACG UGU CUGUUG     g
 ||||| ||||| ||| ||||||      
 CGUUA AGUGU ACA GACAgc     u
A     C     C   -      acaag 

>cin-mir-4036 (-22.60)   [cin-miR-4036-5p:1-22] [cin-miR-4036-3p:33-52]

-U          C    A      ug 
  GUGCAAAGCC AAUC UGUCUa  c
  |||||||||| |||| ||||||  c
  UACGUUUUGG UUGG GCAGau  a
UG          -    -      ug 

>cin-mir-4037 (-22.70)   [cin-miR-4037-5p:1-22] [cin-miR-4037-3p:38-57]

ACA     AC    C   A     -c  a 
   AUUGC  UCGU UGU CCGcc  cc u
   |||||  |||| ||| |||||  ||  
   UAACG  AGCA ACA GGCgg  gg g
UCG     GU    -   -     ua  c 

>cin-mir-4038 (-17.30)   [cin-miR-4038-5p:1-20] [cin-miR-4038-3p:36-55]

C        C   A     Au   guu 
 GGUCAAUA CAG UGCAA  caa   c
 |||||||| ||| |||||  |||    
 CUAGUUAU GUC ACGUU  guu   a
U        U   -     AC   gua 

>cin-mir-4039 (-18.40)   [cin-miR-4039-5p:1-20] [cin-miR-4039-3p:31-50]

U   UG    UG          ua 
 AUA  AAGA  UAAGCUAUuc  u
 |||  ||||  ||||||||||   
 UAU  UUCU  GUUUGAUAag  a
U   GU    UU          uu 

>cin-mir-4040 (-21.90)   [cin-miR-4040-5p:1-23] [cin-miR-4040-3p:34-53]

   U       C  A        aug 
UCG CUUUCUG AU UGGUUGUU   u
||| ||||||| || ||||||||    
AGC GAAAGAC UA ACCAACaa   g
   U       -  G        ccu 

>cin-mir-4041 (-21.60)   [cin-miR-4041-5p:1-20] [cin-miR-4041-3p:34-53]

        C   U     C     cu 
CAGUGAUU AAG CCUAU Ugcug  u
|||||||| ||| ||||| |||||   
GUUACUAA UUC GGAUA ACggc  c
        U   U     -     ua 

>cin-mir-4042 (-13.40)   [cin-miR-4042-5p:1-20] [cin-miR-4042-3p:35-54]

U  A     A   A     -   c au 
 CA UGAUU AAG CCUAU Ugc g  g
 || ||||| ||| ||||| ||| |   
 GU ACUAA UUC GGAUA Acg c  a
-  C     G   A     G   a ga 

>cin-mir-4043 (-19.80)   [cin-miR-4043-5p:1-20] [cin-miR-4043-3p:36-55]

C    A U  U        -Ua  ugc 
 GUUC G CA UCUAUGCA   cg   u
 |||| | || ||||||||   ||    
 CAAG C GU AGAUACGU   gc   a
A    C U  U        Uug  cau 

>cin-mir-4044 (-25.50)   [cin-miR-4044-5p:1-20] [cin-miR-4044-3p:38-57]

-            G         cccuu 
 AGUUGGUAGACU AUUUCAGuu     u
 |||||||||||| |||||||||      
 UCAAUCGUCUGG UAAAGUcag     u
A            A         cuuuc 

>cin-mir-4045 (-22.00)   [cin-miR-4045-5p:1-22] [cin-miR-4045-3p:34-53]

C        A   A   G      gg 
 CACAAUGA AGU GAU UCCGuu  c
 |||||||| ||| ||| ||||||  c
 GUGUUACU UCA CUA GGGCaa  a
A        A   -   -      au 

>cin-mir-4046 (-23.00)   [cin-miR-4046-5p:1-20] [cin-miR-4046-3p:37-58]

    GU  -UG         U   uauu 
CAGG  GU   CGUGUUACU gug    a
||||  ||   ||||||||| |||    u
GUCC  CA   GCACAAUGA Uac    g
    UG  UAA         C   uaca 

>cin-mir-4047 (-24.40)   [cin-miR-4047-5p:1-20] [cin-miR-4047-3p:34-53]

CC           A        -  u 
  AGACACUCAGA ACACGAuu ug c
  ||||||||||| |||||||| ||  
  UUUGUGAGUCU UGUGUUaa ac g
UC           A        c  a 

>cin-mir-4048 (-19.60)   [cin-miR-4048-5p:1-22] [cin-miR-4048-3p:38-57]

G     UG   A   U    U    cuuu 
 CACCU  GUC CCA UAUU Gcuc    u
 |||||  ||| ||| |||| ||||     
 GUGGA  CAG GGU AUGA CGag    a
G     --   A   C    -    uuau 

>cin-mir-4049 (-29.30)   [cin-miR-4049-5p:1-22] [cin-miR-4049-3p:51-70]

-C       U  UU      G C   -c g    a 
  AGGUAAA CU  CAGCUU U gcg  u cgcc c
  ||||||| ||  |||||| | |||  | ||||  
  UCCGUUU GG  GUCGAA a cgu  a gcgg c
AA       C  GU      g c   aa g    u 

>cin-mir-4050 (-22.50)   [cin-miR-4050-5p:1-23] [cin-miR-4050-3p:37-56]

       AU      U         a u 
UAGGUAA  CAAAUU CAGGCUGuu g g
|||||||  |||||| ||||||||| | a
AUCCGUU  GUUUAA GUUCGACaa c g
       --      -         c a 

>cin-mir-4051 (-20.50)   [cin-miR-4051-5p:1-20] [cin-miR-4051-3p:34-53]

U    C    A    ACUA      ug 
 UCAA CAUC CGGC    Uugggu  g
 |||| |||| ||||    ||||||   
 AGUU GUGG GCUG    AACCca  a
A    A    A    ---G      ca 

>cin-mir-4052 (-20.70)   [cin-miR-4052-5p:1-20] [cin-miR-4052-3p:31-50]

C   -    CA        A    a 
 AGG CUUG  UUUCAAGU Aguc c
 ||| ||||  |||||||| ||||  
 UCC GGAC  AAAGUUCA Ucag g
-   A    CC        C    u 

>cin-mir-4053 (-32.50)   [cin-miR-4053-5p:1-19] [cin-miR-4053-3p:41-62]

-  -      U       CG       a  u 
 CG CCGGGG AUGACGU  Uacugug cg a
 || |||||| |||||||  ||||||| || g
 GC GGCCUC UGCUGCA  AUgacgc gu g
G  A      U       UG       -  u 

>cin-mir-4054 (-16.10)   [cin-miR-4054-5p:1-20] [cin-miR-4054-3p:38-57]

UAU  UU    U    U      ua  aa 
   GA  GAUG UUAA GGCucu  ac  a
   ||  |||| |||| ||||||  ||   
   CU  CUAC AGUU UCGAga  ug  a
-GU  UU    C    U      --  ca 

>cin-mir-4055 (-18.20)   [cin-miR-4055-5p:1-20] [cin-miR-4055-3p:37-56]

      G   UG        a  uuau 
UAUUCG AAA  UAGGGUGG cg    c
|||||| |||  |||||||| ||    a
GUAAGC UUU  GUCUUACC gc    u
      -   GU        A  uuaa 

>cin-mir-4056 (-25.40)   [cin-miR-4056-5p:1-23] [cin-miR-4056-3p:34-53]

AC   U            AU    aaa 
  UGA GUAGAACAAGGC  GCGc   c
  ||| ||||||||||||  ||||    
  ACU CAUCUUGUUCUG  CGCg   a
CC   -            --    cca 

>cin-mir-4057 (-23.80)   [cin-miR-4057-5p:1-20] [cin-miR-4057-3p:33-53]

-GG     C  CU      U     g 
   CUUGG GA  GUAGCA Aacac g
   ||||| ||  |||||| ||||| a
   GAACC CU  CAUCGU UUgug u
CUA     A  UU      -     a 

>cin-mir-4058 (-5.50)   [cin-miR-4058-5p:1-19]

-----AA    GCCG      G  u 
       GGAU    GUUUGA CU u
       ||||    |||||| || a
       uuug    uaaauu ga a
uuuuggg    auua      g  a 

>cin-mir-4059 (-22.70)   [cin-miR-4059-5p:1-20] [cin-miR-4059-3p:33-52]

U        AGA          aua 
 AGCAGCAA   CAGUAUUGga   u
 ||||||||   ||||||||||    
 UCGUCGUU   GUCGUAACuu   u
C        CAC          cgu 

>cin-mir-4060 (-17.40)   [cin-miR-4060-5p:1-20] [cin-miR-4060-3p:36-55]

        C UU    U     ucga 
AUUUCACU U  CAAC GUUgg    a
|||||||| |  |||| |||||    a
UGAAGUGA G  GUUG CGAcc    u
        C UU    C     uaua 

>cin-mir-4061 (-20.30)   [cin-miR-4061-5p:1-20] [cin-miR-4061-3p:31-50]

A     UC C     UG      a 
 GGCGG  C UCAGA  GUUucg u
 |||||  | |||||  ||||||  
 CUGCC  G GGUCU  CAAagu u
A     UU C     CA      c 

>cin-mir-4062 (-22.10)   [cin-miR-4062-5p:1-20] [cin-miR-4062-3p:44-63]

C    GCAUC        -    ---     ug 
 GCCU     UUUACAGC UUca   agugc  c
 ||||     |||||||| ||||   |||||   
 CGGA     AAAUGUCG AAgu   uuaug  g
A    -AAUA        U    cag     uu 

>cin-mir-4063 (-25.10)   [cin-miR-4063-5p:1-21] [cin-miR-4063-3p:37-56]

AA         CA        a    ga 
  CACCUUAAU  CCAAUGUG uugu  u
  |||||||||  |||||||| ||||  a
  GUGGAAUUA  GGUUACGC Aacg  a
-G         --        A    ac 

>cin-mir-4064 (-16.10)   [cin-miR-4064-5p:1-22] [cin-miR-4064-3p:31-51]

-A U    A    -    A     ua 
  G CAGG UUAC GGUU GUUUU  a
  | |||| |||| |||| |||||   
  C GUCC AAUG CCAA CAAaa  a
GC U    C    G    -     uc 

>cin-mir-4065 (-23.90)   [cin-miR-4065-5p:1-22] [cin-miR-4065-3p:50-71]

-     -U          CU     u  cg gc ca 
 CACUG  GGAUCUUGUC  AUACu gu  g  g  g
 |||||  ||||||||||  ||||| ||  |  |   
 GUGAC  UCUAGAACAG  UAUga ua  u  c  c
G     UC          -C     c  au aa au 

>cin-mir-4066 (-24.20)   [cin-miR-4066-5p:1-22] [cin-miR-4066-3p:30-48]

CCA         C            
   GAUGUGGUG AGGCAUGCGaa 
   ||||||||| |||||||||| a
   CUGUACUAU UCCGUACguug 
-GC         U            

>cin-mir-4067 (-21.10)   [cin-miR-4067-5p:1-20] [cin-miR-4067-3p:38-57]

C        GAA     C      uuga 
 AAGGAACG   AUGAG CGuugg    c
 ||||||||   ||||| ||||||    u
 UUCCUUGC   UACUU GCGAcu    u
A        --A     U      ucaa 

>cin-mir-4068 (-22.70)   [cin-miR-4068-5p:1-20] [cin-miR-4068-3p:45-66]

-         CC  A     -     uau uca 
 AAGUCUUUG  CA CAGCA Acaug   c   c
 |||||||||  || ||||| |||||   |    
 UUCGGAAAC  GU GUCGU Uguac   g   c
G         AA  A     A     uuc uua 

>cin-mir-4069 (-24.00)   [cin-miR-4069-5p:1-19] [cin-miR-4069-3p:39-57]

CUA   U  CU          u   aag 
   CCC GU  UUAAGCUGag cgc   a
   ||| ||  |||||||||| |||   g
   GGG CA  AAUUCGACUc gug   g
-GC   U  AU          -   acg 

>cin-mir-4070 (-20.10)   [cin-miR-4070-5p:1-22] [cin-miR-4070-3p:40-58]

U   A       CA   A      -c  ca 
 CGA UGUUAUG  GGC CGUGca  gu  u
 ||| |||||||  ||| ||||||  ||   
 GCU ACAGUGC  CUG GCACgu  cg  a
-   -       -A   C      au  ag 

>cin-mir-4071 (-21.10)   [cin-miR-4071-5p:1-20] [cin-miR-4071-3p:31-50]

C       UA   U  C      u 
 UUGCUCU  CUG GA AUCccu g
 |||||||  ||| || |||||| c
 AACGGGA  GAC CU UAGGga c
A       CA   -  A      a 

>cin-mir-4072 (-15.10)   [cin-miR-4072-5p:1-23] [cin-miR-4072-3p:35-54]

--      UU    C          -  a 
  UUUGUU  AAGG UUCAUUUUCU ac a
  ||||||  |||| |||||||||| ||  
  AAACAG  UUCU AGGUAAAAga ug a
CA      --    -          c  u 

>cin-mir-4073 (-18.30)   [cin-miR-4073-5p:1-20] [cin-miR-4073-3p:33-52]

         A   U C       uc 
ACGACAAGU GGG C UUUUgcg  a
||||||||| ||| | |||||||  c
UGUUGUUCA CUU G AGGACgc  c
         G   - U       ua 

>cin-mir-4074 (-20.00)   [cin-miR-4074-5p:1-20] [cin-miR-4074-3p:33-52]

UGUU       GG      A  uua 
    GACGGCG  GAUGUU gu   u
    |||||||  |||||| ||    
    CUGCCGC  UUGCAA ca   u
ACUU       UA      C  cgg 

>cin-mir-4075 (-42.40)   [cin-miR-4075-5p:1-20] [cin-miR-4075-3p:67-85]

---        A U   GA     ucagc      gc   c    aa 
   GGUCCUUG G UCU  GCACc     ggccgc  agc accg  a
   |||||||| | |||  |||||     ||||||  ||| ||||   
   CCGGGAAC C AGA  Ugugg     uuggcg  ucg uggc  a
CCA        - U   AA     -----      -a   -    ac 

>cin-mir-4076 (-28.10)   [cin-miR-4076-5p:1-22] [cin-miR-4076-3p:37-56]

C     G         AAU     cau 
 AACGA UCCCUGAAA   CCCga   a
 ||||| |||||||||   |||||   c
 UUGCU AGGGACUUU   GGgcu   a
A     A         -GU     uaa 

>cin-mir-4077a (-22.22)   [cin-miR-4077a-5p:1-20]

A       AA UG         guuuc 
 AGUUGGA  U  AUUGACUgg     g
 |||||||  |  |||||||||     a
 ucaaccu  a  uaauugacc     a
a       -c gu         auaua 

>cin-mir-4077b (-19.80)   [cin-miR-4077b-5p:1-20]

A       AU            -gu  u 
 AGUUGGA  UUGAUUGACUgg   gu g
 |||||||  ||||||||||||   ||  
 ucaacuu  aauuaauugacc   ca a
a       -c            aug  a 

>cin-mir-4077c (-26.60)   [cin-miR-4077c-5p:1-20]

A       A  UG         guuug 
 AGUUGGA GU  AUUGACUgg     a
 ||||||| ||  |||||||||      
 ucaaccu ca  uaauugacc     a
a       -  gu         auaua 

>cin-mir-4078 (-21.70)   [cin-miR-4078-5p:1-20] [cin-miR-4078-3p:32-51]

C       GA      G     gu 
 CUUGUAG  GUAAAG GAAac  u
 |||||||  |||||| |||||  u
 GGACGUC  CGUUUC CUUug  a
U       AC      A     ac 

>cin-mir-4079 (-24.80)   [cin-miR-4079-5p:1-22] [cin-miR-4079-3p:31-50]

U   U    UA    -          
 GCU CAUC  CUAG GUUAGCUgg 
 ||| ||||  |||| |||||||| a
 CGA GUAG  GAUC CGAUcgaca 
A   U    UC    U          

>cin-mir-4080 (-22.30)   [cin-miR-4080-5p:1-19] [cin-miR-4080-3p:31-50]

U   A    A     A C        
 GCU CAUC GCUAG G Uagcugu 
 ||| |||| ||||| | |||||| u
 CGA GUAG UGAUC C AUCgacc 
A   A    A     - A        

>cin-mir-4081 (-24.50)   [cin-miR-4081-5p:1-20] [cin-miR-4081-3p:32-51]

          CC           ug 
UAGUUCAACU  AUACAGAAuug  g
||||||||||  |||||||||||   
GUCGAGUUGA  UAUGUCUUGac  u
          -A           uc 

>cin-mir-4082 (-17.20)   [cin-miR-4082-5p:1-20] [cin-miR-4082-3p:31-50]

C  C       -        C  ag 
 AG UCAACUU AUACAGAA ug  a
 || ||||||| |||||||| ||   
 UC AGUUGAG UAUGUCUU ac  c
-  A       G        A  ac 

>cin-mir-4083 (-15.85)   [cin-miR-4083-5p:1-20] [cin-miR-4083-3p:45-65]

--     UAUAU       CUU  aucuaugca 
  GUGGG     UAGGAAG   cc         a
  |||||     |||||||   ||          
  CACCC     AUCUUUC   gg         u
GA     -UUUU       UAU  ccaaauuua 

>cin-mir-4084 (-19.40)   [cin-miR-4084-5p:1-20] [cin-miR-4084-3p:53-73]

-           CU  A      ---    a   cua 
 AGAUCUUCUGG  AU GUUUgu   uuga cuu   u
 |||||||||||  || ||||||   |||| |||   u
 UUUAGAAGACU  UA CAAAca   aacu gaa   c
C           AU  A      uaa    a   uuu 

>cin-mir-4085 (-17.40)   [cin-miR-4085-5p:1-21] [cin-miR-4085-3p:37-56]

U    C    UG   G  -      aaua 
 CGCA GUUG  CAG CA AGCagg    g
 |||| ||||  ||| || ||||||     
 GUGU UAAC  GUU GU UCGUcc    a
-    -    CU   -  G      aaca 

>cin-mir-4086 (-18.90)   [cin-miR-4086-3p:37-56]

     u uc          a  uuuua 
gggag u  ccaucaaaau cu     u
||||| |  |||||||||| ||      
CCCUC A  GGUAGUUUUA ga     a
     C UC          C  uuuua 

>cin-mir-4087 (-14.00)   [cin-miR-4087-5p:1-21] [cin-miR-4087-3p:36-55]

--   UU   U  -   -A      auu 
  UCA  UCC CA CCA  UUAUGU   g
  |||  ||| || |||  ||||||   c
  AGU  AGG GU GGU  Aauacg   a
AU   UC   U  A   GC      aaa 

>cin-mir-4088 (-13.90)   [cin-miR-4088-5p:1-19] [cin-miR-4088-3p:50-67]

--    --A  AU     -   GGaguacugggcu 
  GACU   UG  GAGAU GUU             c
  ||||   ||  ||||| |||              
  CUGA   AC  CUCUA cag             u
AC    GUC  AC     a   uuaguacgucuag 

>cin-mir-4089 (-20.70)   [cin-miR-4089-5p:1-20]

C UG  AA          -    a  a  auu 
 U  GA  UGCAUGUGCU UUgc ug cg   u
 |  ||  |||||||||| |||| || ||    
 a  uu  gcguacacga aacg ac gu   u
a gu  ac          c    -  a  aau 

>cin-mir-4090 (-13.30)   [cin-miR-4090-3p:56-73]

    ua        ----------   a     -gg    a 
uaac  aaucgacu          cgu uguuu   uacu u
||||  ||||||||          ||| |||||   ||||  
GUUG  UUGGUUGA          gua acgaa   auga c
    UG        UGGAcggaag   a     aga    a 

>cin-mir-4091 (-31.00)   [cin-miR-4091-5p:1-20] [cin-miR-4091-3p:66-85]

U  C      CUAUC       g     gcaguggcuacacauc 
 GG AGUGAG     GUAGCag cuguu                a
 || ||||||     ||||||| |||||                u
 CC UCACUC     CAUUGUC GACaa                g
U  A      -----       -     acuaaaguacugcagu 

>cin-mir-4092 (-18.60)   [cin-miR-4092-5p:1-20] [cin-miR-4092-3p:34-53]

CG       G   AC   AA     c 
  UGUUGUG AGA  GAC  uagcg a
  ||||||| |||  |||  ||||| a
  ACGACAC UCU  CUG  AUcgu c
-A       A   GU   -G     u 

>cin-mir-4093 (-30.70)   [cin-miR-4093-5p:1-20] [cin-miR-4093-3p:48-67]

-CU      C     C       -  ---     a 
   CCGCAG UUUUG UGCAUua gu   ugccc u
   |||||| ||||| ||||||| ||   ||||| a
   GGCGUC AAAAC ACGUAgu ca   gcggg a
AUU      -     A       g  uag     a 

>cin-mir-4094 (-29.40)   [cin-miR-4094-5p:1-19] [cin-miR-4094-3p:76-95]

-----    UCU      C       cuucuucu     -cu   -   ca    g 
     GUGC   GGGCCU GUUGGag        uugcu   gag cug  cggu c
     ||||   |||||| |||||||        |||||   ||| |||  |||| a
     UACG   UCUGGA CAACCuc        aacga   uuc gau  gucg u
CGGCU    ---      -       --------     aag   u   -c    u 

>cin-mir-4095 (-24.20)   [cin-miR-4095-5p:1-20]

CUUC      G   C       uu     
    CCUGGG GUG UGGUAgc  ggua 
    |||||| ||| |||||||  ||| c
    gggccc cac acuaucg  cuaa 
aaac      a   c       -u     

>cin-mir-4096 (-14.00)   [cin-miR-4096-3p:47-66]

     -uuu    a    g ug     u ug  u 
cacaa    gcua auug c  aaacu u  ua u
|||||    |||| |||| |  ||||| |  ||  
GUGUU    CGAU UAAC G  Uuuga a  au g
     UUAU    A    - --     c gu  g 

>cin-mir-4097 (-35.60)   [cin-miR-4097-5p:1-19] [cin-miR-4097-3p:75-94]

---CAAUA              aauaac          cu    ugac 
        UAAAGUUGACCUGA      cucauuaacg  gguu    c
        ||||||||||||||      ||||||||||  ||||    u
        GUUUCGACUGGAcu      gagugauugc  ccaa    u
CAACUACC              -ccagu          -u    uuag 

>cin-mir-4098 (-39.80)   [cin-miR-4098-5p:1-20] [cin-miR-4098-3p:41-60]

                     -ua    a 
AUCGCUCUGUUAUGCUUCGGu   agcg u
|||||||||||||||||||||   |||| a
UAGCGAGACAAUGCGAAGCCa   uugc u
                     cug    a 

>cin-mir-4099 (-32.40)   [cin-miR-4099-5p:1-20] [cin-miR-4099-3p:75-94]

            A     AA  uauaa       --------   u     c 
UUUGGCACCAUG CGAUC  cu     acuaugu        agu agcaa u
|||||||||||| |||||  ||     |||||||        ||| ||||| u
AGACUGUGGUAC GUUAG  ga     ugauacg        uua ucguu u
            A     GC  -----       aaauaugg   u     a 

>cin-mir-4100 (-22.60)   [cin-miR-4100-5p:1-21] [cin-miR-4100-3p:32-53]

--    C        U            
  UGAG UUUCGUCU AUGAUUGaugu 
  |||| |||||||| |||||||||| a
  ACUC AAAGUAGA UACUAAuuacu 
GC    A        U            

>cin-mir-4101 (-13.50)   [cin-miR-4101-3p:41-59]

gug   c      ---     c   u    u 
   cgc uauaua   aucua cgu acuu u
   ||| ||||||   ||||| ||| |||| a
   GUG AUAUGU   UGGAU gca uggg u
--G   U      UGU     u   -    u 

>cin-mir-4102 (-19.80)   [cin-miR-4102-5p:1-20] [cin-miR-4102-3p:33-53]

-CG      A -         U   c 
   CAAUAC C AUGGUGUCA auu a
   |||||| | ||||||||| ||| u
   GUUAUG G UACCGCAGU uga u
UUG      C C         c   a 

>cin-mir-4077d (-22.40)   [cin-miR-4077d-5p:1-20]

A      C   G           ugua 
 AGUUGG UGU AUUUGGCUggu    u
 |||||| ||| |||||||||||    g
 ucaacc aca uaaauugacua    a
a      -   g           uaau 

>cin-mir-4103 (-16.70)   [cin-miR-4103-3p:23-40]

ac  -   gu    ga   a 
  ca cgg  cugu  cgu g
  || |||  ||||  |||  
  GU GCC  GGCG  GCG c
-U  C   UG    UC   a 

>cin-mir-4104 (-12.60)   [cin-miR-4104-5p:1-18]

AC    AA    --    ---    -      uu  a 
  GUGA  UUGU  UGAC   UGau uguaua  ug c
  ||||  ||||  ||||   |||| ||||||  ||  
  uacu  agca  acug   auua acauau  ac g
ca    gc    uu    caa    c      -c  u 

>cin-mir-4105 (-20.30)   [cin-miR-4105-5p:1-18]

AC        U  GU A u  g   -   uc 
  AAAAAACG GG  C C gu ucc ggu  c
  |||||||| ||  | | || ||| |||   
  uuuuuugc cc  g g cg agg ccg  c
aa        -  ug a u  -   u   aa 

>cin-mir-4106 (-10.60)   [cin-miR-4106-3p:30-50]

-      cc    -         uu 
 aagauu  auca uguuuugca  u
 ||||||  |||| |||||||||   
 UUUUGA  UGGU AUAAAAUgu  u
U      UU    U         uu 

>cin-mir-4107 (-12.90)   [cin-miR-4107-5p:1-19]

     UAA   AUU  -    a     aa    u  ag 
AUAUC   UUG   GU UGGu uuaua  guau ua  a
|||||   |||   || |||| |||||  |||| ||   
uguag   aac   cg acca aaugu  caua au  u
     ugc   -gu  u    c     ac    c  ag 

>cin-mir-4108 (-15.90)   [cin-miR-4108-5p:1-18]

       --A        ACuu 
UGUGUGA   GUAGAGGA    g
|||||||   ||||||||    c
auacauu   caucuccu    c
       aag        cuuu 

>cin-mir-4109 (-39.20)   [cin-miR-4109-5p:1-20] [cin-miR-4109-3p:53-70]

AC            AC       uaacc       uu 
  CCCGCUUAAUCG  CCACguu     ggaccag  u
  ||||||||||||  |||||||     |||||||   
  GGGCGAAUUAGC  GGUGuaa     ccugguu  g
--            CU       ----c       cg 

>cin-mir-4110 (-22.00)   [cin-miR-4110-5p:1-20] [cin-miR-4110-3p:43-60]

AA              GU    --c    gu 
  CCAUGUUAAUAGCA  UGua   acau  a
  ||||||||||||||  ||||   ||||   
  GGUACAAUUGUUGU  ACau   ugua  u
--              AC    cca    gg 

>cin-mir-4111 (-9.90)   [cin-miR-4111-3p:50-68]

--      -u   a   uc     uuuau    aa 
  ucacaa  uaa cag  uuuuc     uuac  u
  ||||||  ||| |||  |||||     ||||  u
  GGUGUU  AUU GUU  Aaaag     aaug  u
UG      UU   A   -U     -uuuu    ac 

>cin-mir-4112 (-15.90)   [cin-miR-4112-5p:1-20] [cin-miR-4112-3p:47-66]

--      U    UUG      --  uu    uu 
  AUACAU CAUU   ACAUAC  ua  ggca  g
  |||||| ||||   ||||||  ||  ||||  u
  UAUGUA GUAG   UGUAUg  au  uugu  a
GG      -    UAA      ua  uu    uc 

>cin-mir-4113 (-13.60)   [cin-miR-4113-5p:1-20]

-UCU    U  AAU         u 
    GGUU UC   GUGUAAAuu g
    |||| ||   ||||||||| g
    ccaa ag   cgcauuuaa u
augc    u  guc         u 

>cin-mir-4114 (-19.06)   [cin-miR-4114-5p:1-20]

-UAA    UAAU   -U         g     a    uuauuauauua 
    GUUG    AUG  UGUGUcuau uuguc auac           u
    ||||    |||  ||||||||| ||||| ||||            
    uaac    ugc  acacagaug aauag ugug           g
aaac    cagu   cc         a     a    cagacacuuca 

>cin-mir-4115 (-38.50)   [cin-miR-4115-5p:1-22] [cin-miR-4115-3p:44-63]

C                     aua   cug 
 UUGUCUGCACUCCCGUUCUUU   ggc   a
 |||||||||||||||||||||   |||   a
 AAUAGACGUGAGGGCGAGAaa   ccg   g
C                     --a   aau 

>cin-mir-4116 (-14.70)   [cin-miR-4116-5p:1-18]

    C     G  AUU    g 
GGGG AAGAU GG   UUgu c
|||| ||||| ||   ||||  
cccc uucua cu   ggca u
    a     g  -au    a 

>cin-mir-4117 (-5.80)   [cin-miR-4117-5p:1-18]

U  -  -GAA   AA     uuu  uu       ugu 
 GU GU    UGU  UGGAA   aa  gguuuaa   a
 || ||    |||  |||||   ||  |||||||   a
 ca ca    aca  gcuuu   uu  uuaaauu   a
a  u  aaaa   ag     ---  uu       uaa 

>cin-mir-4118 (-15.70)   [cin-miR-4118-3p:32-50]

           u  ag g    gu 
cuuuggugaca ca  u agaa  u
||||||||||| ||  | ||||   
GAGAUCACUGU GU  A Uuuu  u
           U  AA G    gg 

>cin-mir-4119 (-24.30)   [cin-miR-4119-5p:1-20] [cin-miR-4119-3p:37-56]

-C    U           A    g aa 
  GUUU GUUUGCCAUUC GCag g  u
  |||| ||||||||||| |||| |  g
  CAAA CGGACGGUAAG Cguu u  a
UA    U           C    g ga 

>cin-mir-4120 (-12.60)   [cin-miR-4120-5p:1-19]

CAUGA     A      -- Uu    u 
     UGAUG GAAUUU  G  caua c
     ||||| ||||||  |  ||||  
     acuac cuuaga  u  guau u
aagua     -      gu gg    a 

>cin-mir-4121 (-13.80)   [cin-miR-4121-3p:37-55]

acaua   cuc      -g     a   ac 
     aca   cccaau  cgaca agg  u
     |||   ||||||  ||||| |||   
     UGU   GGGUUG  GUUGU ucu  a
-----   -UU      AG     G   ag 

>cin-mir-4122 (-21.10)   [cin-miR-4122-3p:48-65]

u        ug    ----      -a      u 
 guuucaaa  gacu    ucaugg  aauguu c
 ||||||||  ||||    ||||||  ||||||  
 CGAAGUUU  UUGA    aguauu  uuacaa a
A        GU    AUCu      aa      u 

>cin-mir-4123 (-17.30)   [cin-miR-4123-5p:1-22] [cin-miR-4123-3p:30-49]

A  U       C  CUC     g 
 GC UCUUCCU AG   GCUUU u
 || ||||||| ||   ||||| c
 CG GGAAGGG UC   CGAaa g
G  C       C  AAA     g 

>cin-mir-4003d (-15.70)   [cin-miR-4003d-3p:35-54]

u a     guau   c   ug  a g 
 g guugg    cca ucu  ca u a
 | |||||    ||| |||  || | a
 C UAACC    GGU AGA  gu a c
A A     -AAU   A   GU  a a 

>cin-mir-4124 (-5.60)   [cin-miR-4124-5p:1-20]

     AUG     AAAUA     aagc 
ACUGU   UGAAA     UGgua    u
|||||   |||||     |||||     
ugaca   auuuu     aucgu    u
     ---     auuug     auuu 

>cin-mir-4125 (-21.00)   [cin-miR-4125-5p:1-20]

AUCAUU   -             u      au  a   -uua   u 
      UGG CAAAGACAAAGgu auuaaa  aa guu    uau u
      ||| ||||||||||||| ||||||  || |||    |||  
      acc guuuuuguuuuca uaauuu  uu cga    aua a
--uuuc   u             -      cu  c   uuug   u 

>cin-mir-4126 (-9.60)   [cin-miR-4126-5p:1-19]

   G    A --UU    --AAU   a   c 
AAA UGCA C    UGAU     acu cca u
||| |||| |    ||||     ||| |||  
uuu acgu g    acua     uga ggu g
   g    c uagc    agguu   -   a 

>cin-mir-4127 (-24.20)   [cin-miR-4127-5p:1-20] [cin-miR-4127-3p:35-55]

-   AG   G U      G    g  a 
 GAC  CUC C CAGCUG CUgu ug u
 |||  ||| | |||||| |||| || a
 UUG  GAG G GUCGAC GAca ac a
G   AA   A U      G    -  u 

>cin-mir-4128 (-17.60)   [cin-miR-4128-3p:48-67]

   -     -   a    c    gaa   gc  ga 
uuc ccagu cua uuca acac   ugu  uu  u
||| ||||| ||| |||| ||||   |||  ||   
AGG GGUCA GAU GAGU Ugug   aca  aa  c
   A     A   G    U    ---   aa  ag 

>cin-mir-4129 (-5.60)   [cin-miR-4129-3p:22-39]

---u  g       aa   c 
    uc uuauugg  gac u
    || |||||||  |||  
    GG AAUAAUU  CUg u
CUAC  A       GC   a 

>cin-mir-4130 (-16.20)   [cin-miR-4130-3p:39-58]

ucaa     --      agaacuagauaa    ga 
    gacac  agcugu            cugu  c
    |||||  ||||||            ||||   
    CUGUG  UCGACA            GACa  g
AAUG     CG      ------------    au 

>cin-mir-4131 (-29.60)   [cin-miR-4131-5p:1-20] [cin-miR-4131-3p:29-48]

A      -               g 
 CCUAGG AAUUUUGCCACAGuu u
 |||||| |||||||||||||||  
 GGAUCC UUAAAACGGUGUUaa u
-      C               c 

>cin-mir-4132 (-14.50)   [cin-miR-4132-5p:1-20] [cin-miR-4132-3p:32-51]

C       -AAA   C      guc 
 AAUGCAA    GGC AUUUGu   g
 |||||||    ||| ||||||    
 UUAUGUU    UCG UAAAca   a
A       GUAG   U      aua 

>cin-mir-4133 (-26.64)   [cin-miR-4133-3p:73-91]

      c          ga   u     ugucuaa        c 
gcuacg aaacguaaca  caa aauca       cuaauugu a
|||||| ||||||||||  ||| |||||       |||||||| g
CGAUGU UUUGUGUUGU  guu uuagu       gauuaaua u
      U          AC   u     uucuguc        u 

>cin-mir-4134 (-16.50)   [cin-miR-4134-5p:1-20]

UA      GG  G         gu 
  AAAACA  CA UGUAAAUau  u
  ||||||  || |||||||||  a
  uuuugu  gu acauuuaug  u
-a      aa  g         ug 

>cin-mir-4135 (-13.30)   [cin-miR-4135-3p:36-55]

--     uau     ugaua     aua 
  cuacc   uuaac     cauca   a
  |||||   |||||     |||||    
  GGUGG   AGUUG     Guagu   g
UC     UUU     -UACC     acu 

>cin-mir-4136 (-10.00)   [cin-miR-4136-3p:32-51]

         c   aca     caa 
uaaacauug aua   uaguu   c
||||||||| |||   |||||   a
AUUUGUAGC UAU   GUCAg   u
         A   GAA     cac 

>cin-mir-4137 (-8.30)   [cin-miR-4137-3p:41-59]

uuguuaaauua  auuaa    -     aa     a 
           cu     uaug aauua  gcuua a
           ||     |||| |||||  |||||  
           GG     AUAC UUAAU  UGGgu u
----------G  ----G    G     GG     u 

>cin-mir-4138 (-11.90)   [cin-miR-4138-5p:1-19]

UA       ---AGA      A    u 
  GAUGAAG      GUAAUG uuca u
  |||||||      |||||| |||| g
  uuacuuc      uauuac aggu c
aa       aaacac      a    u 

>cin-mir-4139 (-13.80)   [cin-miR-4139-5p:1-20] [cin-miR-4139-3p:34-52]

C        A    U     a  aua 
 ACUGAAAC UAGA CACUU aa   u
 |||||||| |||| ||||| ||    
 UGGCUUUG AUUU GUGAA uu   u
-        C    -     A  caa 

>cin-mir-4140 (-18.70)   [cin-miR-4140-5p:1-20] [cin-miR-4140-3p:34-53]

A         UCC  C    cu  ua 
 CGUCGUCGU   CA CUGG  au  a
 |||||||||   || ||||  ||   
 GCAGCAGUA   GU GACC  ua  c
-         UUA  A    Ac  uu 

>cin-mir-4141 (-20.50)   [cin-miR-4141-5p:1-19] [cin-miR-4141-3p:35-54]

U     -   C  U    A    a  a 
 GGUCA CAG UG UUGC Cauu ug u
 ||||| ||| || |||| |||| ||  
 CCAGU GUC GC AACG GUaa ac a
G     C   C  U    -    c  u 

>cin-mir-4142 (-22.10)   [cin-miR-4142-5p:1-20] [cin-miR-4142-3p:57-78]

UAGC   U        AUA        - a au    cu 
    AGC CAUCUGGU   Aaaagacg c g  guuu  u
    ||| ||||||||   |||||||| | |  ||||   
    UCG GUAGACCA   UUUUuugu g c  uaaa  u
-CCA   U        GAC        a a cu    aa 

>cin-mir-4143 (-14.80)   [cin-miR-4143-5p:1-20] [cin-miR-4143-3p:34-53]

-       U    AA UG    a  u 
 CAUGUUU GUGU  U  UGUu uu a
 ||||||| ||||  |  |||| ||  
 GUACAAA CACA  A  ACaa ag u
U       C    AA GU    a  a 

>cin-mir-4144 (-27.96)   [cin-miR-4144-5p:1-20] [cin-miR-4144-3p:56-75]

UUCG    A   UCG           --c    guguac 
    UCUG CAU   GCAAGacuuca   cagg      c
    |||| |||   |||||||||||   ||||      a
    AGAC GUG   CGUUCUGAAgu   gucc      g
----    G   CUA           aau    aauuug 

>cin-mir-4145 (-11.30)   [cin-miR-4145-3p:54-72]

ug    -  ug   -a   g   g  aauga     u 
  acgu ag  guu  guu aau ug     guuau c
  |||| ||  |||  ||| ||| ||     ||||| u
  UGUA UU  UAA  UAA uug gc     uagug g
GG    G  GU   GG   g   g  ---gg     a 

>cin-mir-4146 (-16.70)   [cin-miR-4146-3p:40-59]

--   a          u   g  ggc   a 
  cuu uuggcaagaa uuu cu   caa g
  ||| |||||||||| ||| ||   |||  
  GAG GACCGUUCUU AAA ga   guu u
GA   -          U   A  auu   u 

>cin-mir-4147 (-10.72)   [cin-miR-4147-3p:36-55]

     c aa     g ua   gagau 
agcaa c  guaga a  auu     u
||||| |  ||||| |  |||     a
UCGUU G  CGUCU U  UAa     a
     U AA     G GC   aaaua 

>cin-mir-4148 (-14.90)   [cin-miR-4148-5p:1-19]

GG      GUCU   C    cau  u 
  AGUCGU    GGA AGCu   gg a
  ||||||    ||| ||||   || a
  uuagca    ccu uuga   cc a
ca      aacu   a    -au  a 

>cin-mir-4149 (-16.01)   [cin-miR-4149-5p:1-20]

   UC     U   -------     -  ua     accg  g 
UAU  UUUGU GAU       GGAAA Ag  gaacc    uc c
|||  ||||| |||       ||||| ||  |||||    ||  
aug  agaca cug       ccuuu uu  uuugg    ag g
   ga     -   cauuguu     a  gc     ----  a 

>cin-mir-4150 (-26.60)   [cin-miR-4150-5p:1-19]

AUA C            G    aa     -  a c      u 
   G UACUGUGAGUGU Aaag  aucuu cu g uuuugu u
   | |||||||||||| ||||  ||||| || | ||||||  
   c augauacucaca uuuc  uagaa ga c aaaaua u
aua -            a    ac     u  - u      u 

>cin-mir-4151 (-21.70)   [cin-miR-4151-5p:1-20] [cin-miR-4151-3p:30-51]

--GUG                   u 
     AUAAUAUGAUGUCAUAAug u
     ||||||||||||||||||| c
     UAUUAUACUGUAGUGUUac u
UUAUA                   a 

>cin-mir-4152 (-15.40)   [cin-miR-4152-5p:1-18]

A    ---U   U  U UA    -ga   ac    g   gaua g 
 GAUG    AGU GG G  AAgu   cgu  guuu aau    g a
 ||||    ||| || |  ||||   |||  |||| |||    |  
 cuau    ucg cc c  uuca   gcg  caaa uua    c a
c    uuau   u  - --    aug   ca    g   ---g a 

>cin-mir-4153 (-20.80)   [cin-miR-4153-3p:44-61]

     c    uc     gcgu    u aua 
gacgu acua  cgcgg    uucg g   u
||||| ||||  |||||    |||| |   a
CUGCA UGGU  GCGCU    aagc c   c
     U    UU     --Au    u aua 

>cin-mir-4154 (-14.90)   [cin-miR-4154-3p:67-84]

gacug    -u    uu     -      uaua   --      c 
     acga  gcca  uaagc gaaaua    ucu  uuaaua a
     ||||  ||||  ||||| ||||||    |||  ||||||  
     UGCU  UGGU  GUUUg uuuuau    agg  gguuau a
--CGA    UU    -U     a      -uuc   uu      c 

>cin-mir-4155 (-10.40)   [cin-miR-4155-5p:1-21] [cin-miR-4155-3p:34-55]

-CAU      -     -UU    Ua  a 
    UUUUUG UUCUG   AUAG  uu c
    |||||| |||||   ||||  ||  
    AAAAAC GAGAC   UAUc  ag u
UGAU      U     UCU    cc  u 

>cin-mir-4156 (-41.70)   [cin-miR-4156-5p:1-19] [cin-miR-4156-3p:55-74]

A                      caccac     ca 
 GGUAAGGUCCUACAGCGUggua      gguca  a
 ||||||||||||||||||||||      |||||  a
 CCAUUUCAGGAUGUCGUACUau      ccagu  u
-                      uacccu     uu 

>cin-mir-4157 (-19.50)   [cin-miR-4157-5p:1-20]

U      AU   A UAU       cau 
 GGUAAG  GCG G   GGUgcuu   a
 ||||||  ||| |   |||||||    
 ccauuc  cgc c   ucacgaa   a
g      --   c --u       cua 

>cin-mir-4158 (-26.90)   [cin-miR-4158-5p:1-22]

U  CC A  A      -     U   --u   u    uuaacgcagauauguggaguucauuu 
 GC  G UG UGUUAU UGUUU gca   gua uaac                          c
 ||  | || |||||| ||||| |||   ||| ||||                           
 cg  c ac acaaua acaaa cgu   cgu guug                          a
c  au -  -      u     -   uuu   u    uaaauuuugucaaguacgggagucac 

>cin-mir-4159 (-14.80)   [cin-miR-4159-3p:46-65]

----             cgu   a     guauu 
    caguuuuacacau   aau uuuuu     u
    |||||||||||||   ||| |||||      
    GUUAAAGUGUGUA   Uua aaaaa     c
GAUG             -AU   a     aaaaa 

>cin-mir-4160 (-2.00)   [cin-miR-4160-3p:25-44]

u    -a  gaa     aa g 
 uaug  ug   ugauc  c a
 ||||  ||   |||||  | a
 GUAC  AC   GUUAG  G u
G    AA  AAA     AA g 

>cin-mir-4161 (-19.90)   [cin-miR-4161-3p:69-90]

----a           ---     auauguagggacuccuaguuaag 
     aguaacguuau   gcaau                       u
     |||||||||||   |||||                       u
     UUAUUGUAGUA   CGUua                       u
UUUUG           GCC     aacaaauugauuuugugucgugu 

>cin-mir-4162 (-14.70)   [cin-miR-4162-5p:1-23] [cin-miR-4162-3p:33-52]

---         CU     CUUGG    u 
   CUGUUGAUU  CUUUU     UUgu a
   |||||||||  |||||     ||||  
   GACAACUAA  GAAGA     Aacg u
AAC         UG     -----    u 

>cin-mir-4163 (-29.70)   [cin-miR-4163-5p:1-20] [cin-miR-4163-3p:35-54]

U              -   A uu  g 
 GUAUAUUACAGAGG GGG U  cc u
 |||||||||||||| ||| |  || u
 CAUAUGAUGUCUCC CCC a  gg u
A              A   A uu  a 

>cin-mir-4164 (-4.10)   [cin-miR-4164-3p:33-51]

     -a     uuua   uu    g 
acggu  auaua    aaa  ugaa c
|||||  |||||    |||  ||||  
UGUCG  UGUAU    UUU  auuu a
     AC     --UG   CU    u 

>cin-mir-4165 (-21.00)   [cin-miR-4165-3p:34-53]

u       ccac      a    cau 
 gucccau    ccuacu uaug   a
 |||||||    |||||| ||||    
 CAGGGUA    GGGUGA GUac   u
A       AAAC      -    aca 

>cin-mir-4166 (-11.30)   [cin-miR-4166-5p:1-19]

---------------U         ----        ----Ag     a 
                GGGAAAAUA    UUAAAUGG      uuaua a
                |||||||||    ||||||||      |||||  
                uccuuuuau    gauuuacu      agugu u
acuuuaaaaaguaauu         uuua        aaugaa     u 

>cin-mir-4167 (-7.60)   [cin-miR-4167-5p:1-18]

U    A  G       ---CC    aaaua 
 UAGU GA UGGAAUG     aagc     u
 |||| || |||||||     ||||      
 guca cu acuuuau     uucg     u
u    -  -       auaac    caacu 

>cin-mir-4168 (-10.40)   [cin-miR-4168-3p:55-72]

     -    gaaaug    aaua   ggaaaagaaccc 
acugg uuaa      cguc    gcu            a
||||| ||||      ||||    |||             
UGAUU AGUU      GCAG    Uga            u
     U    ----AA    ---G   aagaaauuguuc 

>cin-mir-4169 (-11.60)   [cin-miR-4169-3p:26-44]

   --c    -  ---      gu 
ccu   cgcu gu   uucacu  g
|||   |||| ||   ||||||   
GGA   GCGA CA   GAGuga  g
   AAA    G  CGC      ag 

>cin-mir-4170 (-8.70)   [cin-miR-4170-5p:1-19]

-  -GA UU      -   C  a 
 UG   A  GGUGAU UGG UG u
 ||   |  |||||| ||| || a
 ac   u  ccauug acc gc a
g  aug uu      u   a  a 

>cin-mir-4171 (-15.50)   [cin-miR-4171-5p:1-20]

U      --          CCA 
 GACUCU  CUUAAGGAAG   g
 ||||||  ||||||||||    
 cugaga  ggauucuuuu   g
a      cu          uca 

>cin-mir-4172 (-11.10)   [cin-miR-4172-3p:35-53]

--       a  u      c  u   a 
  aaguaua ug cauaau au gug u
  ||||||| || |||||| || |||  
  UUUAUAU AC GUAUUA ua uac g
GA       -  U      U  u   u 

>cin-mir-4173 (-24.90)   [cin-miR-4173-5p:1-20] [cin-miR-4173-3p:50-69]

AU         C   - -C       -----     aa 
  UUCGUCUGC AAC C  GCAagag     ucauu  c
  ||||||||| ||| |  |||||||     |||||   
  AAGCAGACG UUG G  CGUucuu     aguaa  g
--         C   A AA       cuuug     au 

>cin-mir-4174 (-9.60)   [cin-miR-4174-3p:29-47]

----  c          aa   aug 
    cu gcaaaaauuu  acu   u
    || ||||||||||  |||    
    GG CGUUUUUAAA  Uga   u
AAAA  C          -C   gcu 

>cin-mir-4175 (-12.90)   [cin-miR-4175-3p:28-46]

-     c    ug  g   g  g 
 uacca ugga  gc aua ua g
 ||||| ||||  || ||| || u
 AUGGU GCCU  CG UGU Gu g
G     A    --  A   G  a 

>cin-mir-4176 (-16.27)   [cin-miR-4176-5p:1-20]

U        ------UUCUUU      accuuu         -   uu 
 CCAGAAAU            UAAGUa      uauauucaa aag  u
 ||||||||            ||||||      ||||||||| |||   
 ggucuuua            auucau      auauagguu uuu  u
u        uuuauuuuuuuu      --guac         c   uu 

>cin-mir-4177 (-25.70)   [cin-miR-4177-5p:1-20] [cin-miR-4177-3p:62-81]

                     aaucgaaa    c u    aac 
UAUUUUUAAAACAGCAAUUAa        ccca u uuaa   a
|||||||||||||||||||||        |||| | ||||    
AUAAAAAUUUUGUCGUUAAUu        gggu a aauu   g
                     -------g    u c    aac 

>cin-mir-4178a (-16.90)   [cin-miR-4178a-5p:1-20]

U      -UUGA       -UU    uuau 
 GCAAAC     UCAGGUU   agca    c
 ||||||     |||||||   ||||     
 cguuug     gguucaa   ucgu    a
a      cccaa       ucu    ugcu 

>cin-mir-4178b (-17.90)   [cin-miR-4178b-5p:1-22]

A       -UUGA       -UU    uuac 
 UGCAAAC     UCAGGUU   Agca    a
 |||||||     |||||||   ||||     
 acguuug     gguucaa   ucgu    a
a       cccaa       uuu    uguu 

>cin-mir-4179 (-16.50)   [cin-miR-4179-5p:1-18] [cin-miR-4179-3p:48-65]

CA   C    G          auacu   uuuc 
  GCU AUCU GUAUAAAaac     gua    c
  ||| |||| ||||||||||     |||     
  CGA UAGA CAUAUUUUug     cau    g
-C   U    A          --cau   uaca 

>cin-mir-4180 (-34.30)   [cin-miR-4180-5p:1-21] [cin-miR-4180-3p:67-85]

U         CC     C        ----   a         u 
 CUGCCAUAC  UGAGA UUUaucau    ggu ugauguugg u
 |||||||||  ||||| ||||||||    ||| |||||||||  
 GACGGUAUG  AUUCU AGauggug    uca auuauaauc a
-         UC     A        guca   c         u 

>cin-mir-4181 (-34.00)   [cin-miR-4181-5p:1-21] [cin-miR-4181-3p:30-49]

              U          
AUUGUGUCAGCCUG CGUUCUaga 
|||||||||||||| |||||||| a
UAACACAGUCGGAC GCAAGauua 
              U          

>cin-mir-4182 (-16.60)   [cin-miR-4182-5p:1-20] [cin-miR-4182-3p:38-56]

   AA  G         -       cc 
CAU  UG AGGUUUUUU ACUagug  a
|||  || ||||||||| |||||||  a
GUA  AC UCUAAAAAA Uggucau  a
   AG  G         C       aa 

>cin-mir-4183 (-25.20)   [cin-miR-4183-5p:1-20] [cin-miR-4183-3p:58-79]

AG    AAG      - -   ---U  u         -  aa 
  CGGG   GAGUGG C CGG    ga auaacagag au  u
  ||||   |||||| | |||    || ||||||||| ||  a
  GCCC   UUCGCU G GCC    cu uauuguuuc ug  c
CG    -GU      A U   UAuu  -         a  ga 

>cin-mir-4184 (-13.30)   [cin-miR-4184-3p:56-73]

uug   aa   gcgau      g a   c  g   gu 
   auu  guc     aauauc g aca uu cau  c
   |||  |||     |||||| | ||| || |||   
   UAG  UAG     UUAUAg u ugu ag gug  c
-AA   GG   --AAU      g a   u  g   gu 

>cin-mir-4005c (-19.30)   [cin-miR-4005c-5p:1-20]

-U          -G UU     --a     
  GAGUUGGUAU  U  CUGGU   guac 
  ||||||||||  |  |||||   ||| u
  uucgaccaug  g  gauca   caug 
ac          aa gg     cug     

>cin-mir-4185 (-15.60)   [cin-miR-4185-5p:1-18] [cin-miR-4185-3p:46-67]

-----   -     A   UA    cug      -   ua 
     CAG CGGUG UGA  AUAC   gacgug auu  u
     ||| ||||| |||  ||||   |||||| |||   
     GUC GUCAU ACU  UAUG   Uuguac uag  a
GUCGA   U     -   --    ---      g   ua 

>cin-mir-4186 (-26.80)   [cin-miR-4186-5p:1-20]

C     G       A U          aca    u 
 UAGAU AGGCAAG G GAGuguuauu   aaag g
 ||||| ||||||| | ||||||||||   ||||  
 aucua ucuguuc c cucacaauaa   uuuc g
a     a       a c          --a    u 

>cin-mir-4187 (-20.60)   [cin-miR-4187-5p:1-20]

UUU       -   --       -     --------a   g  a    auu 
   GGUGUUG UGC  UGUGCAA cuuau         uca ga cauu   u
   ||||||| |||  ||||||| |||||         ||| || ||||    
   ccauaau aug  acauguu gaaua         agu uu guga   a
auu       u   uu       a     augacauaa   g  a    aau 

>cin-mir-4188 (-10.20)   [cin-miR-4188-5p:1-18]

UCA        UU     ca     c   cuu 
   AAUGCAAU  UUAUA  uuugc aac   a
   ||||||||  |||||  ||||| |||   u
   uuauguug  aauau  agaug uug   a
aaa        --     uc     -   uac 

>cin-mir-4189 (-25.10)   [cin-miR-4189-5p:1-21]

AC UG     U      AC  uuaccu     ugu  uu 
  G  CGUGG AGUUUA  CU      uacgu   ag  u
  |  ||||| ||||||  ||      |||||   ||   
  c  gcacc ucgaau  ga      gugcg   uc  g
ua gu     -      gu  ugcugu     -uu  ca 

>cin-mir-4190 (-12.90)   [cin-miR-4190-5p:1-19]

       U  AUA  UA        ug a 
AUAUGAG UU   UU  CAuauaca  u u
||||||| ||   ||  ||||||||  |  
uauauuu ag   aa  guaugugu  g a
       u  -ga  gg        gu u 

>cin-mir-4191 (-16.00)   [cin-miR-4191-5p:1-20]

AG    A   U  U         uuga    a 
  GUUU UGA CG AACAAUagg    guua a
  |||| ||| || |||||||||    |||| a
  caaa acu gc uuguuauuu    caau u
ca    c   u  -         uaag    u 

>cin-mir-4192 (-3.60)   [cin-miR-4192-3p:34-51]

uauaaa    uu       --    uu 
      aauc  uuuuuua  auau  a
      ||||  |||||||  ||||  u
      UUGG  AAAAGGU  Ugua  u
----AA    UU       AC    cg 

>cin-mir-4193 (-12.60)   [cin-miR-4193-5p:1-19]

--------------------AU    A   AG     UUa  a 
                      GUUU ACA  UGUCU   ug u
                      |||| |||  |||||   ||  
                      cgaa ugu  acgga   ac g
uaucuguucgauugagaacacg    c   aa     --c  u 

>cin-mir-4194 (-11.00)   [cin-miR-4194-5p:1-18] [cin-miR-4194-3p:34-51]

UG   UAAA         a    agc 
  ACG    ACGUGUGUG cgca   c
  |||    ||||||||| ||||    
  UGU    UGUAUAUAU GUgu   a
GG   ---G         G    gug 

>cin-mir-4195 (-10.30)   [cin-miR-4195-3p:37-56]

--    -cu      c      uacaau     
  guca   uauuau uguaua      agcc 
  ||||   |||||| ||||||      ||| u
  CGGU   AUAAUG ACAUau      ucga 
UU    UAC      U      ------     

>cin-mir-4196 (-30.40)   [cin-miR-4196-5p:1-21]

    C    CA    ACA          aca 
ACUC AAAA  GAGC   GCGggacuac   u
|||| ||||  ||||   ||||||||||    
ugag uuuu  cuug   cgcccugaug   g
    c    uc    ggg          cuc 

>cin-mir-4197 (-23.80)   [cin-miR-4197-5p:1-20]

CA    U A        -A   uua 
  CGGU C GCUGCAUC  GGc   c
  |||| | ||||||||  |||    
  gucg g cgacguag  ccg   c
ug    u c        gc   caa 

>cin-mir-4198 (-10.81)   [cin-miR-4198-5p:1-18]

AAU           AA    aucugacauau 
   GAUGUUAUUUU  UGaa           a
   |||||||||||  ||||           u
   uuacgauaaag  acuu           u
ugu           gg    cguuuucccau 

>cin-mir-4199 (-13.90)   [cin-miR-4199-3p:35-54]

cuuuc        ---          c 
     guuuuuuu   uucgaucgag g
     ||||||||   |||||||||| g
     CGGAAAAG   AAGUuagcuu c
CAAAC        CUU          a 

>cin-mir-4200 (-28.90)   [cin-miR-4200-5p:1-20] [cin-miR-4200-3p:34-55]

-        UG          a    c 
 CACUAAAA  AGGGACAGAG gaaa u
 ||||||||  |||||||||| ||||  
 GUGAUUUU  UCCCUGUCUC cuuu a
C        CA          C    u 

>cin-mir-4201 (-9.70)   [cin-miR-4201-5p:1-20]

     U A     --GGG UG  auau 
GGCAU G UAUGU     U  Ga    g
||||| | |||||     |  ||    c
ccgua c augcg     g  cu    g
     - a     aagag gu  aaga 

>cin-mir-4202 (-17.60)   [cin-miR-4202-5p:1-19]

U   -U      ---UUUC      -    u  ----u        aau 
 GUG  GUUUCA       GUUGcu uaau ag     ugcaaaau   c
 |||  ||||||       |||||| |||| ||     ||||||||    
 cau  uaaagu       cgacga guug uc     auguuuug   a
a   uu      cguuuuu      u    u  cuacu        auu 

>cin-mir-4203 (-14.60)   [cin-miR-4203-3p:42-62]

uu    u    c    gug   cuu      u 
  uaag ucua agca   guu   aaacuu c
  |||| |||| ||||   |||   ||||||  
  GUUC AGGU UCGU   CAA   uuuggg u
-G    U    -    -AA   -AU      g 

>cin-mir-4204 (-12.30)   [cin-miR-4204-5p:1-23] [cin-miR-4204-3p:35-54]

---         U         -A   u 
   UAAAUAUAA GUCAUUUAU  CAU a
   ||||||||| |||||||||  ||| u
   AUUUAUAUU UAGUAAAUa  gua u
GAC         -         ac   u 

>cin-mir-4205 (-13.50)   [cin-miR-4205-5p:1-18]

   UU    UG    -  Aaau 
CGG  UAAU  GAUG GA    a
|||  ||||  |||| ||    u
gcc  guug  cugc cu    g
   cu    gu    u  gcga 

>cin-mir-4206 (-13.30)   [cin-miR-4206-3p:44-61]

--cc        cgca       -      uuu 
    cuaggcua    uuuaaug aguaaa   a
    ||||||||    ||||||| ||||||    
    GAUUUGAU    AAGUUAu ucauuu   u
GAGU        ----       a      ucu 

>cin-mir-4207 (-10.70)   [cin-miR-4207-3p:35-53]

   ca    ag   c   g   uca 
cgu  uaau  caa ugu aca   a
|||  ||||  ||| ||| |||   g
GCG  AUUA  GUU ACG ugu   a
   AC    GG   U   G   uca 

>cin-mir-4208 (-10.50)   [cin-miR-4208-3p:53-70]

----uuu         g  c    -c    g     u 
       aaauaacau au uuug  uauc uuuuu a
       ||||||||| || ||||  |||| |||||  
       UUUAUUGUA Ua aaau  auag aaaaa a
UUUGGAU         G  a    aa    -     a 

>cin-mir-4209 (-10.80)   [cin-miR-4209-5p:1-20]

          UA  U   U   ---u  u   u 
UAAUGAUUAG  UG GGC Uuu    ua auc a
||||||||||  || ||| |||    || ||| g
guuauuaauu  ac ccg aaa    au uag c
          ua  c   u   uuuu  u   c 

>cin-mir-4210 (-17.50)   [cin-miR-4210-5p:1-20]

U   U               c  a 
 UUA AGAAUAUGUAUGUAA uu c
 ||| ||||||||||||||| ||  
 agu ucuuauacauacauu aa a
a   u               c  u 

>cin-mir-4211 (-14.50)   [cin-miR-4211-5p:1-18]

A  GA        ---CUUC         aa 
 CA  AAAGAUUG       Gcaguaagu  a
 ||  ||||||||       |||||||||  u
 gu  uuucuaau       cguuauuca  a
g  -a        uuuuuuu         au 

>cin-mir-4212 (-8.20)   [cin-miR-4212-3p:43-60]

u cu    a     uua     gu     c 
 g  auga ucguu   aguuu  uuaaa c
 |  |||| |||||   |||||  ||||| u
 C  UGCU AGUAA   UCGAa  aauuu u
A UU    A     ---     au     a 

>cin-mir-4213 (-2.50)   [cin-miR-4213-5p:1-19]

         AAC   UU   c 
AAUAUUUUU   GAU  UCu u
|||||||||   |||  ||| u
uugugaaga   cua  gga u
         -aa   -c   c 

>cin-mir-4214 (-26.11)   [cin-miR-4214-5p:1-18]

      AA    ---            u  -------------    a 
UAUGUG  AGUA   AUGGUGccgcgu gu             acag a
||||||  ||||   |||||||||||| ||             |||| a
gugcgc  ucgu   uaccauggcgua ca             uguc a
      -a    cca            -  agaaagaacauuu    c 

>cin-mir-4215 (-11.82)   [cin-miR-4215-3p:31-50]

         ---        aaugu 
acaaucaua   uacauuaa     u
|||||||||   ||||||||     a
UGUUAGUAU   AUGUAAUU     u
         AUU        aaaau 

>cin-mir-4216 (-26.06)   [cin-miR-4216-5p:1-19] [cin-miR-4216-3p:67-86]

         CU A         ---a    ug     cuucuu 
AAGCUCUUC  C AAAUUUauu    gugc  auaua      a
|||||||||  | |||||||||    ||||  |||||      u
UUCGAGAAG  G UUUAAAUaa    caug  uguau      c
         AU G         aaaa    gu     aauaaa 

>cin-mir-4217 (-8.04)   [cin-miR-4217-3p:43-61]

       --     --auacug    u  ua 
aauagga  auaaa        uauc gu  c
|||||||  |||||        |||| ||  u
UUGUCCU  UGUUU        augg cg  u
       AA     CUAAUcaa    u  uc 

>cin-mir-4218 (-11.50)   [cin-miR-4218-5p:1-19]

--AAGA       AAAAG      u 
      UUUUAUA     GUGucu g
      |||||||     ||||||  
      agaauau     cacagg a
uuuuga       --gga      u 

>cin-mir-4219 (-16.10)   [cin-miR-4219-5p:1-19]

C   - -       GA    Au       -u      a 
 AUG C UGAUUGU  CGUA  aaguguu  aaacaa g
 ||| | |||||||  ||||  |||||||  |||||| c
 uac g auuaacg  gcgu  uuuacaa  uuuguu u
c   a u       --    gu       cc      u 

>cin-let-7f (-25.62)   [cin-let-7f-5p:1-18] [cin-let-7f-3p:53-73]

-U     A     UUC       -   g   guuaa 
  GAGGU GUGGA   UGUaguu uuu cuc     a
  ||||| |||||   ||||||| ||| |||     u
  CUCUA CACCU   ACGUCaa gga gag     g
UG     C     UAC       u   g   accga 

>hsa-mir-4295 (-31.10)   [hsa-miR-4295:11-28]

-      -        G AAU     ----     --  --u    c 
 cuuugu ggaaCAGU C   GUUUU    CCUUg  cc   gugg a
 |||||| |||||||| |   |||||    |||||  ||   |||| a
 gagaca ccuuguca g   caaag    ggaac  gg   cacc g
a      u        - -au     aauc     uu  cuu    a 

>hsa-mir-4296 (-33.43)   [hsa-miR-4296:11-27]

--uug   uuu         U   -G        g  gaagugg 
     ggc   gAUGUGGGC CAG  CUCAgagg cu       u
     |||   ||||||||| |||  |||||||| ||       u
     cug   cuguaccug guc  gggucuuc gg       g
uuuug   ucu         u   ag        g  gaggggu 

>hsa-mir-4297 (-37.00)   [hsa-miR-4297:11-26]

-ag   g   -   -   -     U  G    -   -  u 
   cac cac gUG CCU UCCUG CU UGcc ugc cu c
   ||| ||| ||| ||| ||||| || |||| ||| ||  
   gug gug cgc ggg aggac gg acgg acg ga g
ggg   g   u   u   c     c  g    c   u  a 

>hsa-mir-378c (-38.40)   [hsa-miR-378c:11-35]

g     ---       GGAC UG        AGAG       gg 
 gaggc   caucACU    U  GAGUCAGA    UGGaguc  g
 |||||   |||||||    |  ||||||||    |||||||   
 cuccg   guggugg    a  uucagucu    acuucag  u
-     uga       ---a gu        --ca       ac 

>hsa-mir-4293 (-23.00)   [hsa-miR-4293:52-68]

--agagacac        u gg a       -acau  cu 
          cuguuccu g  a gcuggug     ug  a
          |||||||| |  | |||||||     ||   
          GACAAGGA C  U CGACcac     ac  a
aagucagucc        - AG C       acuuu  uu 

>hsa-mir-4294 (-35.00)   [hsa-miR-4294:11-27]

---    u    c     U U   -   -----     augu 
   ccga gccu GGGAG C ACA GCA     GGGcc    c
   |||| |||| ||||| | ||| |||     |||||    u
   ggcu ugga cccuc g ugu cgu     cccgg    g
cgu    u    -     u -   a   gggaa     gagu 

>hsa-mir-4301 (-25.50)   [hsa-miR-4301:11-30]

acc   --     C     A      UU   Aa 
   agc  caccU CCACU CUUCAC  GUG  c
   |||  ||||| ||||| ||||||  |||  a
   ucg  gugga ggugg gaggug  uac  u
guc   ac     c     -      cu   gu 

>hsa-mir-4299 (-31.30)   [hsa-miR-4299:45-62]

---ggg     a  aa         agu        c 
      uucug cc  ucauguuac   guuuucuc u
      ||||| ||  |||||||||   |||||||| u
      aagaC GG  AGUACAGUG   CGagagag u
aggaaa     -  AG         -GU        a 

>hsa-mir-4298 (-26.60)   [hsa-miR-4298:11-32]

-g    gg   -  -GG     -GA  ---AG     AG 
  ggga  uac CU   GACAG   GG     GAGGC  c
  ||||  ||| ||   |||||   ||     |||||   
  ccuu  aug ga   cuguc   cc     cuccg  c
ca    gg   u  aaa     aaa  aaaga     uu 

>hsa-mir-4300 (-33.10)   [hsa-miR-4300:69-86]

---  a         a  g      aaa   --  --a    cau     gau 
   ug guuuagaag gg ccagcu   uca  gc   gaga   gaggu   c
   || ||||||||| || ||||||   |||  ||   ||||   |||||    
   ac caaguCUUC UC GGUCGA   GGU  cg   cuuu   uucca   a
aua  -         A  A      --G   ga  aaa    --u     aaa 

>hsa-mir-4304 (-32.50)   [hsa-miR-4304:11-27]

a      --    C    U   -       uc 
 gagaag  uggC GGCA GUC CAGGGCA  c
 ||||||  |||| |||| ||| |||||||  c
 cucuuc  accg ucgu cag gucucgu  c
c      cu    -    -   u       ua 

>hsa-mir-4302 (-17.42)   [hsa-miR-4302:11-28]

-   -ggaggg   ---    U        GA 
 uca       aCC   AGUG GGCUCAGC  G
 |||       |||   |||| ||||||||   
 agu       ugg   ucau uugagucg  g
g   aagguua   aau    -        gu 

>hsa-mir-4303 (-29.60)   [hsa-miR-4303:11-27]

--agaaaa                  -C   uu 
        uagcUUCUGAGCUGAGGA  AGc  g
        ||||||||||||||||||  |||  c
        aucgaggauucgauuucu  ucg  u
ugguacca                  uu   uc 

>hsa-mir-4305 (-33.30)   [hsa-miR-4305:11-28]

-cu  -cuu    CU   ---CA    -     ------       cu      cc 
   gc    agaC  AGA     CCUC CAGUU      Cuggguu  uagagg  u
   ||    ||||  |||     |||| |||||      |||||||  ||||||   
   cg    ucug  ucu     ggag gucag      gacucaa  aucucc  a
uuu  uuau    uc   uaaag    u     acuuuu       ac      ua 

>hsa-mir-4306 (-28.67)   [hsa-miR-4306:65-81]

-aa  -u     g  u    agag          -  -  ccuaaccc 
   gc  gcuua ug ccuu    ucuccagagg ca uc        a
   ||  ||||| || ||||    |||||||||| || ||         
   ug  uggAU AC GGAA    AGAGGUcucc gu ag        g
cca  uc     G  -    --AG          u  c  uuuucuaa 

>hsa-mir-4309 (-31.40)   [hsa-miR-4309:11-28]

--ucu    g   ------    G    G   U         ggg 
     gggg uuC      UGGA UCUA GAU CCAggaucu   u
     |||| |||      |||| |||| ||| |||||||||    
     cccc aag      gucu ggau uug gguucugga   u
guucu    g   uuuggc    g    g   -         guu 

>hsa-mir-4307 (-23.50)   [hsa-miR-4307:56-74]

----uca    aaa          uaaa   ug    a    uu 
       gaag   aaacaggaga    guu  ugau augu  g
       ||||   ||||||||||    |||  |||| ||||   
       cuuC   UUUGUCCUUU    UAA  auug uaua  u
accggga    --C          UUUG   gu    a    uc 

>hsa-mir-4308 (-33.40)   [hsa-miR-4308:54-71]

---uau    uc             uu   c   aa      u 
      gggu  agagggaacucca  gga aga  uuuccu u
      ||||  |||||||||||||  ||| |||  ||||||  
      ucca  UCUUCUUUGAGGU  CCU ucu  aaagga u
ccuuuu    -U             -C   u   --      g 

>hsa-mir-4310 (-27.20)   [hsa-miR-4310:32-47]

---   c uc      c    -       a 
   ugg g  uggggc ugag gcugcag a
   ||| |  |||||| |||| |||||||  
   acc c  aCCCUG ACUU CGACGuu c
acc   - cc      U    A       a 

>hsa-mir-4311 (-43.70)   [hsa-miR-4311:11-28]

-ucaga     -G     --     GAG         ga  --a           
      gaggg  AAAGA  GAGCU   UGUGaccug  gc   gcucaggagg 
      |||||  |||||  |||||   |||||||||  ||   ||||||||| g
      cuccc  uuucu  cuugg   acauuggac  ug   uggguccuuc 
cuuaga     gg     ag     ---         gg  gag           

>hsa-mir-4312 (-33.00)   [hsa-miR-4312:48-66]

--gaa   uug    c    a        ---a  -    c 
     agg   gggg acag gagcaagg    gc cuuc c
     |||   |||| |||| ||||||||    || ||||  
     ucc   CCCC UGUC CUUGUUCC    ug ggag c
gagac   uuA    -    -        GGac  a    a 

>hsa-mir-4313 (-53.99)   [hsa-miR-4313:11-30]

gau       ---A  -      --G    AA    ugc     c   uggagga 
   caggccc    GC CCCCUG   CCCC  ACCC   agccc agc       u
   |||||||    || ||||||   ||||  ||||   ||||| |||        
   guccggg    ug ggggac   gggg  uggg   ucggg ucg       g
-uc       gaaa  u      uaa    -g    --u     -   uagagga 

>hsa-mir-4315-1 (-19.22)   [hsa-miR-4315:11-28]

--u  gc   gc     ----     A  UG  Cccuc 
   gg  uuu  CCGCU    UUCUG GC  GA     u
   ||  |||  |||||    ||||| ||  ||     c
   uc  agg  ggcga    aagac ug  cu     u
guc  ua   aa     cauc     g  gu  ccauc 

>hsa-mir-4316 (-30.20)   [hsa-miR-4316:11-27]

-----a    ccca   --  A    -A     --U    u 
      gugg    gGG  UG GGCU  GCUGG   Gugg c
      ||||    |||  || ||||  |||||   ||||  
      cacc    ccc  ac ccga  cgacc   cacc a
caccaa    ---a   ua  c    cc     ucu    c 

>hsa-mir-4314 (-39.00)   [hsa-miR-4314:11-28]

gg   u  - --u       AAA    A    ua --u     ca  ga 
  cca uc c   CUCUGGG   UGGG CAGg  g   ggcca  gu  g
  ||| || |   |||||||   |||| ||||  |   |||||  ||   
  ggu ag g   gagaccc   accc gucu  c   ccggu  cg  a
-a   c  u ucu       ggg    c    uc ugu     --  aa 

>hsa-mir-4318 (-21.30)   [hsa-miR-4318:55-71]

----  uu    au     cauaa      u   ---------        
    gc  cuua  uaugu     acccac gug         gacaagg 
    ||  ||||  |||||     |||||| |||         |||||| g
    cg  ggaU  GUACA     UGGGUG CAC         cuguucc 
aacu  -u    -C     -----      U   ugacagauu        

>hsa-mir-4319 (-33.80)   [hsa-miR-4319:11-27]

u     ---ug      -     AA   C   g --g    c   c 
 uggcu     agUCCC UGAGC  AGC ACu g   aaug ucc u
 |||||     |||||| |||||  ||| ||| |   |||| |||  
 acugg     ucgggg acucg  ucg uga u   uugc agg g
-     uagua      u     ac   -   g aua    -   a 

>hsa-mir-4320 (-18.40)   [hsa-miR-4320:38-55]

--gaca   g   uuu        c  uu -  a 
      ugu ggg   gcuguaga au  c ag u
      ||| |||   |||||||| ||  | ||  
      acg UCC   CGAUGUCU UA  G uc a
guuuca   g   -UU        -  GG c  a 

>hsa-mir-4317 (-17.80)   [hsa-miR-4317:11-27]

-aaaag  -        ---G C        Uau 
      gc gagACAUU    C AGGGAGUU   u
      || ||||||||    | ||||||||    
      cg uuuuguaa    g ucucucga   u
cacaaa  a        aaua u        ugu 

>hsa-mir-4322 (-41.30)   [hsa-miR-4322:43-63]

----a   c a         -   -   --gu   g    a 
     ccg g guuccgcgc cug gcc    guc cccc c
     ||| | ||||||||| ||| |||    ||| ||||  
     ggc c cGGGGUGCG GAC CGG    Cag gggg g
uacga   - -         C   U   GUGU   -    a 

>hsa-mir-4321 (-38.20)   [hsa-miR-4321:50-70]

--cu           a  -c  ug  c  cccga      cgc 
    ggucuccgcag gc  uc  cc cu     gacacc   u
    ||||||||||| ||  ||  || ||     ||||||    
    ccggggGCGUC CG  AG  GG GA     UUgugg   a
cggu           C  CC  GU  C  -----      ucc 

>hsa-mir-4323 (-42.80)   [hsa-miR-4323:42-59]

cggg    -   - --    a       -       a 
    gccc agg c  gggc ugugggg ugucugg g
    |||| ||| |  |||| ||||||| ||||||| a
    cggg ucc G  UCCG ACACCCC ACggacc c
--ca    c   A AC    -       G       g 

>hsa-mir-4324 (-28.10)   [hsa-miR-4324:43-62]

--    c      --uua          cucca  gaac 
  cggc ccuuug     agggucucag     gg    u
  |||| ||||||     ||||||||||     ||    u
  gucg ggaAAU     UCCCAGAGUC     CC    u
ac    u      UCCAA          -----  aaaa 

>hsa-mir-4256 (-19.70)   [hsa-miR-4256:11-28]

--uguuccau     U        G  G   u 
          uuAUC GACCUGAU AA GUc c
          ||||| |||||||| || |||  
          aguag cuggauua uu cgg c
gucuuuaccu     u        g  a   u 

>hsa-mir-4257 (-30.20)   [hsa-miR-4257:59-76]

--------    uagaaa         gguagga      -----g   a   a 
        ggcu      cagucccua       uuuggg      agg gcu a
        ||||      |||||||||       ||||||      ||| |||  
        ccGA      GUCAGGGGU       AGACCc      ucc cga g
gguugauu    ------         -----GG      gggaca   c   a 

>hsa-mir-4258 (-55.30)   [hsa-miR-4258:11-27]

-    -          ---    CC    -----U           ucuu 
 acgc cccccgCCCC   GCCA  GCCU      GGaggcugacc    a
 |||| ||||||||||   ||||  ||||      |||||||||||     
 ugug gggggcgggg   uggu  cggg      cuucuggcugg    c
c    a          guu    -u    ucccuu           cuuu 

>hsa-mir-4259 (-40.60)   [hsa-miR-4259:70-91]

-ga       -    ug    -  a ug g  ----------g       g g gg 
   ugggccc cuug  uccu ga u  g ug           gggcucu a u  g
   ||||||| ||||  |||| || |  | ||           ||||||| | |   
   acccggg GGAC  GGGA CU G  U AC           uccgggg u a  g
agg       A    UG    U  G GU G  acuggagggga       g g aa 

>hsa-mir-4260 (-24.80)   [hsa-miR-4260:11-29]

--aacaag     ---      CA   A UC   c 
        gugaC   UUGGGG  UGG G  CCA u
        |||||   ||||||  ||| |  ||| u
        cacug   gacccc  acc c  ggu c
caaccaca     uuc      ac   - ga   c 

>hsa-mir-4253 (-26.70)   [hsa-miR-4253:41-58]

c   -  --au g    u  g g     a g  uu 
 cag cc    c cccu ga g gcccu g ac  a
 ||| ||    | |||| || | ||||| | ||   
 guc gg    G GGGA CU U CGGGA c ug  c
c   u  accU G    C  G A     - g  uu 

>hsa-mir-4251 (-14.30)   [hsa-miR-4251:35-51]

------     ccucca         c    u  c 
      cacgu      gcuuuuuuc uuag gg c
      |||||      ||||||||| |||| || a
      gugcA      CGGGAAAAG AGUC Cu a
accuuc     ----AC         -    -  u 

>hsa-mir-4254 (-46.00)   [hsa-miR-4254:44-66]

---c     a    --              ucu    uga 
    uuggg ggag  ggugggguggcucc   gcag   g
    ||||| ||||  ||||||||||||||   ||||   u
    gaccc cCUC  CCACCUCAUCGAGG   CGuc   a
cccc     -    UA              -UC    ugg 

>hsa-mir-4255 (-21.50)   [hsa-miR-4255:11-27]

--  -  au    CAG     -        Agu   ua 
  ga gc  ccuu   UGUUC AGAGAUGG   cag  u
  || ||  ||||   ||||| ||||||||   |||  u
  cu cg  ggag   acggg uuuuuacc   guc  g
ua  a  ac    -aa     a        --g   ug 

>hsa-mir-4252 (-33.00)   [hsa-miR-4252:35-53]

--ug   g     ca   -ca     cca    a 
    ggg gcugg  gcu   ucagu   ggcc u
    ||| |||||  |||   |||||   ||||  
    ccc cgACC  CGA   AGUCA   CCGG c
cuaa   g     -A   CUG     ---    u 

>hsa-mir-4325 (-29.00)   [hsa-miR-4325:11-28]

------     agaug    A   G    ----AG    aga       ag 
      gggga     UUGC CUU UCUC      UGAg   ugcuucu  a
      |||||     |||| ||| ||||      ||||   |||||||  u
      uuccu     gacg gaa agag      acuc   acggagg  c
uagagu     ----a    -   g    guagga    cag       ac 

>hsa-mir-4326 (-24.70)   [hsa-miR-4326:11-30]

--   g  cug       UCU    -       
  gcu cu   cUGUUCC   GUCU CCCAGA 
  ||| ||   |||||||   |||| ||||| C
  cgg gg   gacgagg   uagg gggucu 
ac   g  cug       ---    u       

>hsa-mir-4327 (-34.70)   [hsa-miR-4327:11-29]

ggc      --       C       ---A     aaga    au 
   cugggu  aGGCUUG AUGGGGG    CUGGg    gacc  g
   ||||||  ||||||| |||||||    |||||    ||||  a
   gacuca  uccgaac uacucuu    gaccu    uugg  a
gau      uu       -       gagg     --ga    ac 

>hsa-mir-4261 (-23.10)   [hsa-miR-4261:33-48]

---   ggaag         cccag        
   ggu     uggguuccu     uuccuga 
   |||     |||||||||     |||||| g
   cca     ACCCAGGGA     AAGGAca 
cga   -gagg         ---CA        

>hsa-mir-4265 (-42.80)   [hsa-miR-4265:71-89]

---u  ag   g ug     uc        c    aa   auu     g  u g 
    gc  ugg u  gagcu  agccuaca cugu  aga   gguca cc g g
    ||  ||| |  |||||  |||||||| ||||  |||   ||||| || |  
    cg  guc G  CUCGA  UCGGGUGU gacg  ucu   cuagu gg c g
gguc  -g   G GU     -C        C    --   ---     -  u a 

>hsa-mir-4266 (-29.50)   [hsa-miR-4266:30-45]

cc    -  --          -    cuc 
  acug cu  ggccggggcc ccua   a
  |||| ||  |||||||||| ||||    
  ugac gg  CCGGUUCCGG GGAU   a
-c    a  aa          A    Cgg 

>hsa-mir-4267 (-35.20)   [hsa-miR-4267:11-26]

--cucagca       -  -UC       ----      gaa g 
         ggcUCCA GC   GGUGGCA    Cugggg   g c
         ||||||| ||   |||||||    ||||||   |  
         ccgaggu cg   cuacugu    gacccc   c u
ccucuacac       a  ucc       cucc      aga c 

>hsa-mir-4262 (-24.70)   [hsa-miR-4262:28-44]

--gaaa         - -    -    g 
      gcugcaggu g cuga uguu g
      ||||||||| | |||| |||| g
      cgacGUCCA C GACU ACAG g
ccgaga         U A    U    g 

>hsa-mir-2355 (-31.70)   [hsa-miR-2355:11-31]

--   ac    c   C       -   U     Au       uau 
  cag  gugu AUC CCAGAUA CAA GGACA  augcuau   a
  |||  |||| ||| ||||||| ||| |||||  |||||||   a
  guc  caua uag gguuugu guu ccugu  uacggua   u
ca   gu    a   a       c   -     --       ugc 

>hsa-mir-4268 (-26.10)   [hsa-miR-4268:34-54]

---a  c      g     -     uuuu   c 
    ug acauca guucu agagg    gcc u
    || |||||| ||||| |||||    ||| a
    ac uguaGU UAGGA UCUCC    CGG g
gucc  -      G     C     UCCU   c 

>hsa-mir-4269 (-37.60)   [hsa-miR-4269:11-31]

acagc     ------G     ACA     CCC       ug cucu 
     gcccu       CAGGC   GACAG   UGGCuuc  c    u
     |||||       |||||   |||||   |||||||  |     
     cgggg       guccg   cuguc   accgaag  g    u
----a     agguagg     -ga     -uc       gu uuuc 

>hsa-mir-4263 (-20.30)   [hsa-miR-4263:56-73]

----aua   cucu       uuu        gauugg  ug  c 
       gug    ucagggu   acuuggga      ag  gc a
       |||    |||||||   ||||||||      ||  ||  
       cac    GGUUCCG   UGAAUCUU      uc  ug g
cauacaa   --CC       ---        Aacaaa  cu  u 

>hsa-mir-4264 (-21.30)   [hsa-miR-4264:11-27]

-aaa  u -ga        - AUG        aa 
    gc g   uACUCAGU C   GUCAUUgu  c
    || |   |||||||| |   ||||||||   
    cg c   auggguca g   cagugaua  a
gaua  u aga        u -ga        gu 

>hsa-mir-4270 (-27.70)   [hsa-miR-4270:11-30]

---a  aauag    AGGG  U           agaa 
    ca     cuUC    AG CAGGGGAGGGC    a
    ||     ||||    || |||||||||||    u
    gu     gaag    uc guccccuuccg    a
cugg  -gaaa    --gg  -           guag 

>hsa-mir-4271 (-26.20)   [hsa-miR-4271:39-57]

a     --c       ---a        g a   c 
 aaucu   ucuccau    ucuuuccu c gcc c
 |||||   |||||||    |||||||| | |||  
 uuaga   aGGGGUG    AGAAGGGG g ugg c
c     uua       GAAA        G g   a 

>hsa-mir-4272 (-13.00)   [hsa-miR-4272:37-54]

uuu   ----      a   auc    -     au 
   ucu    gcacaa uua   aguu aaugc  a
   |||    |||||| |||   |||| |||||  g
   aga    ugUGUU AGU   UCAA UUACg  a
--g   auau      -   -GA    C     aa 

>hsa-mir-4273 (-26.30)   [hsa-miR-4273:11-28]

--uc            --  UC  A    -C    ---    uug 
    cccuguguGUGU  UC  UG UGGA  AGua   agcc   a
    ||||||||||||  ||  || ||||  ||||   ||||   c
    gggauacguaca  gg  ac acuu  ucgu   ucgg   u
uuuc            cu  ua  -    cu    aaa    uau 

>hsa-mir-4276 (-22.30)   [hsa-miR-4276:11-27]

--cacag  u   U     A   -  G   -    a 
       uc gaC CAGUG CUC AU UGC uggc g
       || ||| ||||| ||| || ||| ||||  
       ag cug gucau gag ua aug accg u
uaacgaa  u   u     c   a  a   c    g 

>hsa-mir-4275 (-20.00)   [hsa-miR-4275:11-27]

--     uuug   A    C     C   u   -c  --    gc 
  acauu    uCC AUUA CACUU UUU ugc  ac  cuga  a
  |||||    ||| |||| ||||| ||| |||  ||  ||||   
  uguaa    agg uaau gugaa aaa acg  ug  gacu  c
uc     uuga   g    a     a   u   ac  ac    ga 

>hsa-mir-4274 (-40.40)   [hsa-miR-4274:64-81]

g       ---     uaacu   cu     c   --        cucc 
 gggcauu   uaggg     gag  gcugc ggg  gccuggcg    u
 |||||||   |||||     |||  ||||| |||  ||||||||    c
 cccgugg   GUCCC     CUC  UGACG Ccc  uggacugu    u
-       uac     ----C   CC     A   ag        ucca 

>hsa-mir-4281 (-36.00)   [hsa-miR-4281:35-52]

--   g  gg      ga ag  u   g   g 
  gcu gg  uccccc  c  ug gga cug g
  ||| ||  ||||||  |  || ||| |||  
  cgg uc  GGGGGG  G  GC CCU GGc g
ga   g  uu      AG -G  -   G   c 

>hsa-mir-4277 (-37.50)   [hsa-miR-4277:11-31]

-cu    -     - -A UU       CA UA        ugcc 
   gggu cgagG C  G  CUGAGCA  G  CACugggc    c
   |||| ||||| |  |  |||||||  |  ||||||||     
   cccg guucc g  c  gacucgu  c  gugacccg    c
cuc    u     u aa uc       -- cc        ucac 

>hsa-mir-4279 (-22.60)   [hsa-miR-4279:33-48]

ug   ----u        --      c   uu 
  cuc     guggagcu  gaggag aga  c
  |||     ||||||||  |||||| |||  u
  gag     caCUUCGG  CUCCUC UCu  c
--   uccuc        CC      -   cu 

>hsa-mir-4278 (-19.60)   [hsa-miR-4278:42-59]

---a   aa   c   -a       a   aaca   a 
    ucu  cac agg  gaauccc uag    uug c
    |||  ||| |||  ||||||| |||    |||  
    agg  guG UCC  UUUGGGG AUC    aac a
aaga   -g   U   CG       G   --ac   u 

>hsa-mir-4280 (-29.10)   [hsa-miR-4280:11-31]

a    ---     GA  G    UC      GA      a 
 auca   gggug  GU UAGU  UGAGCA  GCcuua a
 ||||   |||||  || ||||  ||||||  |||||| g
 uagu   uccac  ua guca  acuugu  uggagu g
-    guu     ag  a    ga      -a      a 

>hsa-mir-4282 (-22.70)   [hsa-miR-4282:40-57]

--     a     a   -ga         -u     
  gguga guucc ggg   agauuuuag  augc 
  ||||| ||||| |||   |||||||||  ||| c
  cuacu caAGG CCU   UUUAAAAUc  uaca 
uc     a     A   ACG         uu     

>hsa-mir-4285 (-30.60)   [hsa-miR-4285:11-28]

--auua   g g       G    -    AUcaauauuu     aaug 
      gcu g GCGGCGA UCCG ACUC          uaagg    a
      ||| | ||||||| |||| ||||          |||||     
      cgg c cgucguu aggc uggg          guucc    c
cggggg   g g       a    g    ----------     ggcc 

>hsa-mir-4283-1 (-28.00)   [hsa-miR-4283:11-27]

--a   ugauc UG     CA         - aag  gu u 
   cuc     c  GGGCU  GCGAGUUUg c   gg  g u
   |||     |  |||||  ||||||||| |   ||  |  
   ggg     g  uccga  cguucggac g   cc  u u
ccc   uuccu gu     -c         u gua  ug c 

>hsa-mir-4284 (-27.80)   [hsa-miR-4284:11-28]

---g      ga       -AC  C     --A  aaa    g 
    uucugu  gGGGCUC   AU ACCCC   Uc   gugg g
    ||||||  |||||||   || |||||   ||   ||||  
    gagaua  uuucgag   ug ugggg   ag   uacu a
ggcg      -g       gau  a     gag  ggg    c 

>hsa-mir-4286 (-27.00)   [hsa-miR-4286:11-27]

--uac   u g    C   -----  C      -      ca   -   a 
     uua g cACC CAC     UC UGGUAC Cauagu  uaa guu g
     ||| | |||| |||     || |||||| ||||||  ||| |||  
     aau c gugg gug     ag accaug gugucg  auu uag g
guaca   u g    u   aauuc  u      a      ag   g   a 

>hsa-mir-4287 (-28.90)   [hsa-miR-4287:11-29]

ua      --uu       -UG    --   ----U        
  guucuu    UCUCCCU   AGGG  CAC     UUucagu 
  ||||||    |||||||   ||||  |||     |||||| u
  cgagga    agagggg   uccc  gug     agagucc 
cc      uacc       uca    ug   uaacu        

>hsa-mir-4288 (-34.20)   [hsa-miR-4288:41-57]

--aug  g       g   u   -        ag 
     ga guggaga uca cag cagcacug  c
     || ||||||| ||| ||| ||||||||   
     cu caCCUUU AGU GUC GUUgugac  a
guuua  g       G   C   U        gg 

>hsa-mir-4292 (-30.20)   [hsa-miR-4292:40-57]

----gaga     ga     accu       a   - a 
        cacca  aggcc    gcuuagg ggc c g
        |||||  |||||    ||||||| ||| |  
        guGGU  UCCGG    CGGGUCC CCg g a
cccgggga     --     ---C       -   u g 

>hsa-mir-4289 (-28.70)   [hsa-miR-4289:11-29]

--cc   gga    A    --        AU    ca 
    uug   ggGC UUGU  GCAGGGCU  CAgg  g
    |||   |||| ||||  ||||||||  ||||   
    gac   uccg gacg  ugucccgg  gucc  u
acua   aaa    a    uc        --    uu 

>hsa-mir-4290 (-38.40)   [hsa-miR-4290:67-85]

--gccaccaa  a  -u          u   u   aa    aauc     aa 
          ga gg  gaagggaggg cag ccc  ucug    ccacc  a
          || ||  |||||||||| ||| |||  ||||    |||||   
          CU CC  CUUUCCUCCC GUu ggg  agau    ggugg  a
ccagucucca  C  UU          -   -   --    ----     au 

>hsa-mir-4291 (-32.20)   [hsa-miR-4291:11-26]

cgccg      U    -----A         gg  g 
     ggggcU CAGC      GGAACAGCU  gu g
     |||||| ||||      |||||||||  ||  
     ucccga gucg      ucuugucga  cg a
----g      c    gugucg         ga  g 

>hsa-mir-4329 (-21.70)   [hsa-miR-4329:43-61]

uagaga    g   -u  c        -    uuuu 
      ggaa gug  ac aggguuuu ggag    u
      |||| |||  || |||||||| ||||     
      ucuu CAC  UG UCCCAGAG CCuc    u
-cgagg    a   CU  A        U    cuuu 

>hsa-mir-4330 (-45.90)   [hsa-miR-4330:77-95]

-aa   -  a   -   aa u         u    ga  g    gg   u  u 
   uug uc gca ggc  u aucugagga gcag  ga gaag  ggc uc u
   ||| || ||| |||  | ||||||||| ||||  || ||||  ||| || u
   gac gg CGU CCG  A UAGACUCCu cguc  cu cuuc  ccg ag u
ccg   u  a   U   AG C         -    ga  a    au   c  u 

>hsa-mir-500b (-40.80)   [hsa-miR-500b:11-28]

-      cu -u         UAC       ag g   uuu 
 cccccu  c  AAUCCUUGC   CUGGGUg  a ugc   c
 ||||||  |  |||||||||   |||||||  | |||   u
 ggggga  g  uuaggaacg   gacccac  u acg   g
a      ac uc         ---       -g g   uaa 

>hsa-mir-4328 (-18.80)   [hsa-miR-4328:30-46]

---         g     a   cc    a 
   aacaguuga uccug gaa  auug g
   ||||||||| ||||| |||  |||| a
   uugucaaUU AGGAC CUU  UGAC a
gcc         -     C   -U    C 

>bmo-mir-92a (-45.00)   [bmo-miR-92a:50-71]

g          c     a u      c  c     cg   c 
 gcccguuugg ugggc g gacugg gc auauu  gua g
 |||||||||| ||||| | |||||| || |||||  |||  
 cgggcgagcc AUCCG C CUGACC CG UAUag  cgu u
-          U     G C      A  U     --   g 

>bmo-mir-2733e-3 (-28.50)   [bmo-miR-2733e:68-89]

uuugcuggacugucuauaaugucuuucaac            -   u    aa    uuc 
                              aauagcuauuac uuc ccag  gaca   a
                              |||||||||||| ||| ||||  ||||   c
                              uUAUCGAUAAUG AAG GGUC  CUgu   a
---------------------uuaaaaccu            U   -    -A    cuu 

>tgu-mir-204-5 (-29.80)   [tgu-miR-204:3-24]

         U   A     U    --ga    
gcUUCCCUU GUC UCCUA GCCU    gcg 
||||||||| ||| ||||| ||||    || a
cggagggaa cgg agggu cgga    cgu 
         c   c     -    gguc    

>tgu-mir-34c-1 (-31.50)   [tgu-miR-34c:11-33]

    g    cA       U      C       cugca 
cuug uuug  GGCAGUG AGUUAG UGAUUGU     g
|||| ||||  ||||||| |||||| |||||||      
gaac aaac  ccgucac ucaauc acuaaca     a
    a    ca       u      -       ccuua 

>isc-mir-1993 (-40.70)   [isc-miR-1993:52-72]

g   -   a  g         a        -a   u -  a 
 gcg cca cc cgugaacac agcgugau  ccg g cu g
 ||| ||| || ||||||||| ||||||||  ||| | || g
 cgu ggu gG GCGCUUGUG UCGUAUUA  ggc c gg c
-   u   c  G         A        Cg   u a  u 

>isc-mir-278 (-61.40)   [isc-miR-278:68-89]

ugcauua     u        uc        uu       u    gu      u 
       uaggc cugaugug  cggaugaa  ucucgcc ggcc  uuccgg c
       ||||| ||||||||  ||||||||  ||||||| ||||  ||||||  
       auccg gacugcaU  GCCUGCUU  AGGGUGG CUgg  aaggcc c
-----ac     -        UU        UU       -    ac      c 

>bta-mir-3114 (-27.60)   [bta-miR-3114:10-27]

ucgccuua    -  C       ----UC    -c      a   a 
        aCCA CU GGCCACC      GUCc  aauagg ucu g
        |||| || |||||||      ||||  |||||| |||  
        uggu ga ucggugg      cggg  uuauuc aga c
-------a    a  c       ucccuu    ca      -   c 

>bta-mir-3600 (-32.60)   [bta-miR-3600:10-31]

ca   -g   AC         AC     -      --g  gg 
  gag  gca  AGUUCUUCA  UGGCA GCUUua   cu  g
  |||  |||  |||||||||  ||||| ||||||   ||   
  cuc  cgu  ucaagaagu  accgu cgaaau   gg  u
ga   gg   ca         -c     u      aca  ac 

>bta-mir-2957 (-38.00)   [bta-miR-2957:6-26]

cg      A       C       --    ---   c 
  ggcCCA GUUCUGU AUGCACU  GAcu   gcu c
  |||||| ||||||| |||||||  ||||   |||  
  ccgggu caagaca uauguga  cuga   cga a
gg      c       c       gg    gcc   g 

>bta-mir-3578 (-28.30)   [bta-miR-3578:51-71]

uu       -   aaaagu     c    aau       caua 
  ugguacu gaa      guugu cgug   gauucgu    a
  ||||||| |||      ||||| ||||   |||||||     
  accauga cuu      CAACA GCAC   CUAAGcg    g
ac       a   -cuCUU     A    CAC       aaau 

>bta-mir-3581 (-33.60)   [bta-miR-3581:13-33]

u a   -  aaa       CA         A  -    g 
 g uac cg   aGGGGUU  CCGAGCAAC UU Cguc u
 | ||| ||   |||||||  ||||||||| || |||| c
 c aug gc   ucuccaa  ggcucguug aa guag c
a c   c  ccc       ug         a  c    a 

>bta-mir-3601 (-27.30)   [bta-miR-3601:45-67]

  -     c    a uu    a  -      a  -   ac 
cc cagac uuuc g  auca uc ugucac ag ugc  a
|| ||||| |||| |  |||| || |||||| || |||   
gg gucug agAG C  UAGU AG ACAGUG UC aug  g
  a     u    C CC    -  U      C  U   gu 

>bta-mir-3602 (-52.32)   [bta-miR-3602:18-38]

-cacau  aac                  ----A           uaaua 
      cc   acgugacGUGUUGGGAUC     CCGCGGUAAgu     u
      ||   ||||||||||||||||||     |||||||||||     c
      gg   ugcacugcacaacccuag     ggugccauuca     a
acgaau  cua                  gagag           cauag 

>bta-mir-3603 (-35.00)   [bta-miR-3603:54-75]

c     c c u  g   g       -  g  a      ---------  c 
 aggcc g g cc cgu caaguaa cc ag auaggc         cc u
 ||||| | | || ||| ||||||| || || ||||||         ||  
 uccgg c c gg gcA GUUCAUU GG UC UAUCCG         gg u
u     - a c  a   A       A  -  C      Acacgucca  g 

>bta-mir-3604-1 (-33.50)   [bta-miR-3604:8-29]

   a   UAA   A   G         GUacaca     ag 
ccc gcc   CCA UGU CAGACUACU       uucag  c
||| |||   ||| ||| |||||||||       |||||   
ggg cgg   ggu aca gucugaugg       aaguc  c
   -   uug   c   a         -----ac     cc 

>bta-mir-3604-2 (-21.10)   [bta-miR-3604:6-27]

ca c   A   A   GC      -    acaau ug    
  g cUA CCA UGU  AGACUA CUGU     u  gga 
  | ||| ||| |||  |||||| ||||     |  || g
  c gau ggu aca  ucugau gaca     a  ccu 
gg a   g   c   aa      a    ----- gu    

>bta-mir-3596 (-23.80)   [bta-miR-3596:60-81]

cucga ga   c          auaguuaucuuccgaggggg 
     g  agg aguagguugu                    c
     |  ||| ||||||||||                    a
     c  UCC UCAUCCAACA                    a
----c AC   A          CACCAAagucccaucacuac 

>aga-mir-375-2 (-40.60)   [aga-miR-375:67-88]

u        gagac     uu g  u   ua     c   u     aa     ua 
 guugcgau     agaau  g au acu  agcca gcg acaga  cuuuu  g
 ||||||||     |||||  | || |||  ||||| ||| |||||  |||||   
 cgacguua     ucuug  c uA UGA  UCGGU UGC UGUUU  gaaag  a
a        ---aa     gc g  U   GC     U   U     ga     ua 

>ame-mir-10-2 (-39.50)   [ame-miR-10:22-42]

ccc    ---a    u      cu   -  G    U           ugau 
   aguu    augc cuacau  ACC CU UAGA CCGAAUUUGUu    a
   ||||    |||| ||||||  ||| || |||| |||||||||||    a
   ucga    uacg ggugug  ugg ga aucu ggcuuaaacag    g
-ca    gaca    u      uu   a  g    u           cgga 

>ame-mir-1-2 (-42.30)   [ame-miR-1:52-73]

       augcu            c    uuc     -  g   
ccgggcg     guuccgugcuuc uuac   ccaua gu ga 
|||||||     |||||||||||| ||||   ||||| || | u
ggcccgc     cGAGGUAUGAAG AAUG   GGUau ca cg 
       ---gu            A    UAA     g  g   

>ath-MIR8543 (-65.80)   [ath-miR854e:3-23]

    -----  A  AUAG            ugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucacagaaacaaca 
cgGA     UG GG    GGAGGAGGAGua                                                                                   g
||||     || ||    ||||||||||||                                                                                   u
gccu     ac cc    ucuucucuucgu                                                                                   a
    uaucg  a  ---a            ugaauagaacaggcagucuuugcacuaccggaacuucgugaacuauucauuggauagaacaaagaacgugguggagacguuga 

>cbr-mir-232-2 (-31.60)   [cbr-miR-232:57-79]

a    -   u        u        uu  ccau      -  acc 
 uuca aga uucggauc ccguaguu  ga    uuuauc ca   u
 |||| ||| |||||||| ||||||||  ||    |||||| ||   a
 aagu uuu aggucuAG GGCGUCAA  CU    AAAUag gu   a
c    g   u        U        UU  ACGU      u  aau 

>cbr-mir-357-2 (-33.80)   [cbr-miR-357:67-87]

-----cuaca  aga   ga        c   g    c  c u          --cua    
          uc   aga  cagcgaau ccg caau ac g gcauuuucau     cca 
          ||   |||  |||||||| ||| |||| || | ||||||||||     || g
          ag   ucu  guugcuua GGC GUUA UG C CGUAAAAgua     gga 
uacgaaauua  --g   aa        A   A    C  A -          aucac    

>cbr-mir-77-2 (-43.34)   [cbr-miR-77:61-82]

-      -u                 cu    g     a   auaguc 
 gagcug  gaauuuggauagcugug  cuga gaaau aca      a
 ||||||  |||||||||||||||||  |||| ||||| |||       
 cuuggc  uuuaaACCUGUCGAUAC  GACU CUUua ugu      c
g      uc                 CG    A     c   acccca 

>cfa-mir-29c-2 (-22.40)   [cfa-miR-29c:37-58]

--         ucc       ---     u 
  accgauuuc   ugguguu   cagag c
  |||||||||   |||||||   ||||| u
  UGGCUAAAG   ACCACGA   guuuu g
AU         UUU       Ucu     u 

>cfa-mir-1837-2 (-18.60)   [cfa-miR-1837:38-59]

--    ga   cu         a ua  u 
  augu  ugg  cuucugaga g  cu c
  ||||  |||  ||||||||| |  || g
  UACA  GUC  GGAGACUCU c  gg a
UC    GC   AG         c uc  u 

>cfa-mir-1837-3 (-18.60)   [cfa-miR-1837:38-59]

--    ga   cu         a ua  u 
  augu  ugg  cuucugaga g  cu c
  ||||  |||  ||||||||| |  || g
  UACA  GUC  GGAGACUCU c  gg a
UC    GC   AG         c uc  u 

>cfa-mir-1837-4 (-18.60)   [cfa-miR-1837:38-59]

--    ga   cu         a ua  u 
  augu  ugg  cuucugaga g  cu c
  ||||  |||  ||||||||| |  || g
  UACA  GUC  GGAGACUCU c  gg a
UC    GC   AG         c uc  u 

>cre-MIR1161b (-31.00)   [cre-miR1161b:58-76]

     gugac    cac     -   --   uu   aa   c      aca 
gccag     acca   accua cug  gag  cuc  cag uaggug   c
|||||     ||||   ||||| |||  |||  |||  ||| ||||||    
ugguu     uggu   uggau GAC  CUC  GAG  GUC AUccac   c
     -----    --u     C   AA   UU   --   -      aca 

>gga-mir-146c-2 (-54.33)   [gga-miR-146c:34-56] [gga-miR-146c*:76-97]

---ga  a     cgaaucuug    uu  c    cU           U           uuu  au 
     ag uguga         gcag  cc agcu  GAGAACUGAAU CCAUGGACUGg   ca  u
     || |||||         ||||  || ||||  ||||||||||| |||||||||||   ||   
     uc acacu         cguc  gg ucga  CUCUUGACUUA GGUACCUGAcu   gu  c
aaucg  a     -ucaaacua    --  u    -U           U           ugc  ac 

>gga-mir-222-2 (-35.10)   [gga-miR-222:57-80]

-----  u  u  cc     auc             -     auu   ucuu 
     ug ag ug  cauca   gcucaguagucag uguag   cug    u
     || || ||  |||||   ||||||||||||| |||||   |||     
     ac uc ac  guagu   UGGGUCAUCGGUC ACAUC   gac    a
ucuau  -  u  -a     CUC             U     GAc   uaac 

>rno-mir-220-2 (-30.50)   [rno-miR-220:14-34]

-------------       a    u  ACCA        GAGA    g 
             gcauuau gggc CC    CAGUGUCA    CCUu g
             ||||||| |||| ||    ||||||||    ||||  
             cguagua cuug gg    gucgcagu    ggag g
cucaugggucugg       -    u  --aa        -acg    u 

>rno-mir-295-2 (-28.20)   [rno-miR-295:13-34]

--   uuu  u  g       U    -     AC     - au 
  cau   gg ga ACUCAAA GUGG GGCAC  UUCug g  u
  |||   || || ||||||| |||| |||||  ||||| |   
  gug   cc cu uggguuu cauc ucgug  aagau c  a
gg   --u  u  g       u    a     -a     g gu 

>tgu-mir-34c-2 (-31.50)   [tgu-miR-34c:11-33]

    g    cA       U      C       cugca 
cuug uuug  GGCAGUG AGUUAG UGAUUGU     g
|||| ||||  ||||||| |||||| |||||||      
gaac aaac  ccgucac ucaauc acuaaca     a
    a    ca       u      -       ccuua 

>dre-let-7e-2 (-43.10)   [dre-let-7e:15-36]

      --       cU   GU         A        ---------     c 
gcuguu  cuugggg  GAG  AGUAGAUUG AUAGUUgu         ggagc c
||||||  |||||||  |||  ||||||||| ||||||||         ||||| u
cgacag  gaauccu  uuc  ucaucuaac uaucaaua         ucucg g
      cg       --   ug         a        gagucucuc     c 

>hsa-mir-1184-2 (-29.50)   [hsa-miR-1184:61-83]

  ug a   c    ugaa      g   ---c    ca    ucaaca    cca 
cu  c gaa gagg    ggaggu guu    ugcu  gcag      gugg   c
||  | ||| ||||    |||||| |||    ||||  ||||      ||||    
gg  g cuu uucc    CCUUCG UAG    GCGA  CGUC      Cacc   a
  gu -   -    ugug      G   UUCA    --    ------    ucu 

>hsa-mir-1184-3 (-29.50)   [hsa-miR-1184:61-83]

  ug a   c    ugaa      g   ---c    ca    ucaaca    cca 
cu  c gaa gagg    ggaggu guu    ugcu  gcag      gugg   c
||  | ||| ||||    |||||| |||    ||||  ||||      ||||    
gg  g cuu uucc    CCUUCG UAG    GCGA  CGUC      Cacc   a
  gu -   -    ugug      G   UUCA    --    ------    ucu 

>hsa-mir-1233-2 (-46.50)   [hsa-miR-1233:63-82]

guga        c      acgg    ggga    ca     aug 
    gugggagg cagggc    cagg    gcug  gggcu   g
    |||||||| ||||||    ||||    ||||  |||||    
    CGCCCUCC GUCCCG    GUcu    cgac  cccgg   g
--GA        U      ---A    ---g    --     gga 

>hsa-mir-1244-2 (-16.70)   [hsa-miR-1244:55-80]

---------       uccga   uu    ua   uuuuug    u    uu 
         aucuuau     gca  ccag  acu      ugua guac  a
         |||||||     |||  ||||  |||      |||| ||||   
         UAGAGUA     UGU  GGUU  UGA      Auau caug  g
aaaaaUUGG       -----   UU    GA   ------    -    uc 

>hsa-mir-1244-3 (-16.70)   [hsa-miR-1244:55-80]

---------       uccga   uu    ua   uuuuug    u    uu 
         aucuuau     gca  ccag  acu      ugua guac  a
         |||||||     |||  ||||  |||      |||| ||||   
         UAGAGUA     UGU  GGUU  UGA      Auau caug  g
aaaaaUUGG       -----   UU    GA   ------    -    uc 

>hsa-mir-1270-2 (-33.50)   [hsa-miR-1270:13-35]

--  c         CU       U         G     ggu 
  ca agaguuaua  GGAGAUA GGAAGAGCU UGUug   a
  || |||||||||  ||||||| ||||||||| |||||    
  gu ucucggugu  cuucuau ucuuuucgg acaau   u
ac  u         au       u         -     gaa 

>hsa-mir-1972-2 (-38.12)   [hsa-miR-1972:48-69]

          u     caca        a   guguc 
uauaggcaug gccac    ccuggcuu aau     a
|||||||||| |||||    |||||||| |||     u
auguccguAC CGGUG    GGACCGGA Uua     u
          U     ACAC        C   aaaau 

>hsa-mir-1302-9 (-62.60)   [hsa-miR-1302:73-93]

ggaugccca   --ag                     g      --uucg        a              
         gcu    uuugaauuuuagauaaacaac aauaau      uagcauaa uaugucccaagcu 
         |||    ||||||||||||||||||||| ||||||      |||||||| |||||||||||| u
         cga    agacuuagagucuauuuguug uuauua      AUCGUAUU AUACAGGGUUuga 
---auuuua   auua                     g      caaaAA        C              

>hsa-mir-1302-10 (-62.60)   [hsa-miR-1302:73-93]

ggaugccca   --ag                     g      --uucg        a              
         gcu    uuugaauuuuagauaaacaac aauaau      uagcauaa uaugucccaagcu 
         |||    ||||||||||||||||||||| ||||||      |||||||| |||||||||||| u
         cga    agacuuagagucuauuuguug uuauua      AUCGUAUU AUACAGGGUUuga 
---auuuua   auua                     g      caaaAA        C              

>hsa-mir-1302-11 (-62.60)   [hsa-miR-1302:73-93]

ggaugccca   --ag                     g      --uucg        a              
         gcu    uuugaauuuuagauaaacaac aauaau      uagcauaa uaugucccaagcu 
         |||    ||||||||||||||||||||| ||||||      |||||||| |||||||||||| u
         cga    agacuuagagucuauuuguug uuauua      AUCGUAUU AUACAGGGUUuga 
---auuuua   auua                     g      caaaAA        C              

>hsa-mir-3118-6 (-33.20)   [hsa-miR-3118:44-66]

       c  u               a      aca 
cauacua aa aauuuucauaaugca ucacac   a
||||||| || ||||||||||||||| ||||||   u
gugugau uU UUAAAAGUAUUACGU AGUGUg   c
       c  C               C      cca 

>hsa-mir-4283-2 (-28.00)   [hsa-miR-4283:11-27]

--a   ugauc UG     CA         - aag  gu u 
   cuc     c  GGGCU  GCGAGUUUg c   gg  g u
   |||     |  |||||  ||||||||| |   ||  |  
   ggg     g  uccga  cguucggac g   cc  u u
ccc   uuccu gu     -c         u gua  ug c 

>hsa-mir-4315-2 (-19.22)   [hsa-miR-4315:11-28]

--u  gc   gc     ----     A  UG  Cccuc 
   gg  uuu  CCGCU    UUCUG GC  GA     u
   ||  |||  |||||    ||||| ||  ||     c
   uc  agg  ggcga    aagac ug  cu     u
guc  ua   aa     cauc     g  gu  ccauc 

>mmu-mir-1906-2 (-23.60)   [mmu-miR-1906:48-69]

ggacauuagga  ---aa   -   a          g  aauu 
           gc     ccu ccu ggguuguugu ag    a
           ||     ||| ||| |||||||||| ||    a
           cg     GGA GGA UCCGACGACG Uc    a
----ccagaga  ggUCG   C   G          -  aagu 

>nve-mir-2024e-2 (-39.60)   [nve-miR-2024e*:21-42] [nve-miR-2024e:52-73]

----a a    g    cu                CGC  G      gg 
     c ucag uaga  ugcuucAGAGUAUUGG   UG GCAAAA  u
     | |||| ||||  ||||||||||||||||   || ||||||  c
     g aguc gucu  acggAGUCUUAUAACC   AC CGUUuu  a
ucaag a    -    uc                AUU  A      ac 

>nve-mir-2024e-3 (-39.60)   [nve-miR-2024e*:21-42] [nve-miR-2024e:52-73]

----a a    g    cu                CGC  G      gg 
     c ucag uaga  ugcuucAGAGUAUUGG   UG GCAAAA  u
     | |||| ||||  ||||||||||||||||   || ||||||  c
     g aguc gucu  acggAGUCUUAUAACC   AC CGUUuu  a
ucaag a    -    uc                AUU  A      ac 

>nve-mir-2032b-2 (-39.10)   [nve-miR-2032b:19-38] [nve-miR-2032b*:50-69]

gcgag     c    cu UC             G  A   u 
     cucac guug  g  GCUGCAACAGUUA CU Gca u
     ||||| ||||  |  ||||||||||||| || ||| u
     gagug cagu  C  CGACGUUGUCAAU GA cgu a
----g     u    aC UA             G  g   u 

>nve-mir-2040a-2 (-41.40)   [nve-miR-2040a*:21-43] [nve-miR-2040a:51-73]

gaucgu      --u  a         U   C     C UG    c 
      gaugcc   ac accuUCGGG CAG UACGA A  AGCG u
      ||||||   || ||||||||| ||| ||||| |  |||| c
      cugcgg   ug ugGAAGUCC GUC AUGCU U  UUgc c
-cauuu      ucc  a         C   A     C GU    u 

>nve-mir-2035-2 (-35.50)   [nve-miR-2035:11-30] [nve-miR-2035*:54-73]

guggcguauuA     U             ugaagu     a 
           CAUGG CUGUUACAAGGGA      gcucg g
           ||||| |||||||||||||      ||||| u
           GUACC GACAGUGUUCCcu      ugagc u
---uuaagAGG     C             ------     u 

>nve-mir-2024a-2 (-29.00)   [nve-miR-2024a*:7-28] [nve-miR-2024a:38-59]

u      A             G      gg 
 gcuucA AAUAUCGGUGUUG GUAAAA  u
 |||||| ||||||||||||| ||||||  c
 cgaAGU UUAUAGCCAUGAC CAUUuu  a
a      G             A      ac 

>nve-mir-2024a-3 (-29.00)   [nve-miR-2024a*:7-28] [nve-miR-2024a:38-59]

u      A             G      gg 
 gcuucA AAUAUCGGUGUUG GUAAAA  u
 |||||| ||||||||||||| ||||||  c
 cgaAGU UUAUAGCCAUGAC CAUUuu  a
a      G             A      ac 

>nve-mir-2024g-2 (-35.80)   [nve-miR-2024g*:22-42] [nve-miR-2024g:54-75]

accaauaag   -u  -       A             -GG         
         ugc  ac ugcuucA AAUAUCGGUGUUG   UAAAaggu 
         |||  || ||||||| |||||||||||||   ||||||| c
         acg  ug acgaAGU UUAUAGCCAUGAC   AUuuucca 
-------aa   uu  c       G             ACA         

>nve-mir-2024g-3 (-35.80)   [nve-miR-2024g*:22-42] [nve-miR-2024g:54-75]

accaauaag   -u  -       A             -GG         
         ugc  ac ugcuucA AAUAUCGGUGUUG   UAAAaggu 
         |||  || ||||||| |||||||||||||   ||||||| c
         acg  ug acgaAGU UUAUAGCCAUGAC   AUuuucca 
-------aa   uu  c       G             ACA         

>bfl-mir-135b-2 (-32.80)   [bfl-miR-135b:9-29]

ccg            UU    CUU      -   cu 
   uguccAAUGGCU  CAUC   UGUGAa ugu  g
   ||||||||||||  ||||   |||||| |||   
   acagguuauugg  guag   acacuu aca  a
aga            gg    -uc      g   cg