Mercurial > repos > lpantano > miraligner
view miraligner/test/test.fa.mirna.ann @ 0:3b8253dc66a2 default tip
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
| author | lpantano |
|---|---|
| date | Tue, 07 Jun 2011 17:28:09 -0400 |
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seq mir mism add t5 t3 s5 s3 DB GTGAGGACTCGGGAGGTGGAGGTTTT hsa-mir-1224 1 24 23TG qTT 0 0 0 0 precursor TCTCACACAGAAATCGCACCCGT hsa-mir-342 61 83 0 0 0 0 0 0 precursor TGTGAACTGAATTCCATAGGCTG hsa-miR-146b-5p 9 31 3TA 0 0 qG GCACTGAG GGCTGTGA miRNA TCTGGCTCCGTGTCTTCAATCCC hsa-mir-149 15 37 19AC 0 0 0 0 0 precursor TAGTACCATCTGAAATCGGTTA hsa-mir-29a 42 63 4TC 0 0 0 0 0 precursor AACATTCATTGTTGTCGGTGGGTTGTGT hsa-mir-181d 36 62 0 qT 0 0 0 0 precursor CCCCACCTCCTTTCTCCTCAGT hsa-mir-1224 65 85 12TC qT 0 0 0 0 precursor CATCTGGGCAACTGACTGAACA hsa-mir-1298 72 92 0 qA 0 0 0 0 precursor AGCTACATCTGGCTACTGGGTCCC hsa-miR-222 69 90 0 qCC 0 qC CAGCAGCT GGGTCTCT miRNA CTTATGAGATTGTATTGTAATT hsa-mir-374a 42 63 6GC 0 0 0 0 0 precursor GCAAAGCACACGGTCTGCAGAGA hsa-mir-330 57 79 14TC 0 0 0 0 0 precursor AGCAGCATTGTACAGGGCTATGAGA hsa-mir-103-1 48 70 0 qGA 0 0 0 0 precursor AGCAGCATTGTACAGGGCTATGAGA hsa-mir-103-2 48 70 0 qGA 0 0 0 0 precursor CAACGGAATCCCAAGAGCAG hsa-miR-191 16 35 15GA 0 0 tCTG CGGGCAAC GCTGTTGT miRNA CCCTCGGAAGATAACTATACAACCTACTGCCTTC hsa-let-7b* 46 79 0 0 0 tCC ATAACTAT TCCCTG miRNA ACTAGATTGTGAGCTCCTGGAG hsa-miR-28-3p 55 76 0 0 tA qG TTCCCACT TGGAGGGC miRNA TTCACAGTGGCTAAATTCCGCT hsa-mir-27a 51 71 15AG qT 0 0 0 0 precursor TGGCTCAGTTCAGCAGGACC hsa-mir-24-1 44 61 0 qCC 0 0 0 0 precursor TGGCTCAGTTCAGCAGGACC hsa-mir-24-2 50 67 0 qCC 0 0 0 0 precursor ACTGCCCTAAGTGCTCCTTCTG hsa-miR-18a* 47 68 0 0 0 tG ATCTACTG CTGGCA miRNA CTGCCCTGGCCCGAGGGACCGCC hsa-miR-874 47 67 0 qCC 0 tA CTTCCTGC CCGACTGG miRNA ACTCCAGCCCCACAGCCTCAGC hsa-mir-766 65 86 0 0 0 0 0 0 precursor TAGCACCATTTGAAATCAGGGGG hsa-miR-29b 51 71 20GT qGG 0 tTT TGTCTAGC TGTTCTTG miRNA TAGCACCATTTGAAATCAGGGGG hsa-miR-29b 52 72 20GT qGG 0 tTT TATCTAGC TGTTTTAG miRNA GTGAGGACTCGGGAGGGGGAGGGTT hsa-mir-1224 1 24 17GT qT 0 0 0 0 precursor TTGCATAGTCACAACAGTGATC hsa-mir-153-1 54 75 15CA 0 0 0 0 0 precursor TTGCATAGTCACAACAGTGATC hsa-mir-153-2 53 74 15CA 0 0 0 0 0 precursor TCTTTTTGGTTATCTAGCTGTATGA hsa-miR-9 14 38 4TC 0 qTC 0 TCTCTCTT ATGAGTGC miRNA TGGCTCAGTTCAGCATGAACAGT hsa-mir-24-1 44 65 16TG qT 0 0 0 0 precursor TGGCTCAGTTCAGCATGAACAGT hsa-mir-24-2 50 71 16TG qT 0 0 0 0 precursor TCTGGCTCTGTGTCTTCACTCC hsa-miR-149 15 36 9TC 0 0 tC GAGCTCTG TCCCGTGC miRNA TGAGGTAGTAGGTTGTTTAGT hsa-let-7a 6 26 17TA 0 0 tT GGGATGAG AGTTTTAG miRNA TGAGGTAGTAGGTTGTTTAGT hsa-let-7a 5 25 17TA 0 0 tT AGGTTGAG AGTTTAGA miRNA TGAGGTAGTAGGTTGTTTAGT hsa-let-7a 4 24 17TA 0 0 tT GAG AGTTTGGG miRNA TATGGCACTGGTAGAATTCACTGT hsa-miR-183 27 50 0 0 0 qGT TGTGTATG CACTGTGA miRNA TGAGGTAGTAGTTTGTGCTTT hsa-let-7i 6 24 0 qTT 0 tGTT TGGCTGAG TGTTGGTC miRNA TGTAAACATCCTACACTCTCTGCT hsa-miR-30c 17 40 21TA 0 0 qT TGTGTGTA CAGCTGTG miRNA TGTAAACATCCTACACTCTCTGCT hsa-miR-30c 7 30 21TA 0 0 qT ATACTGTA CAGCTGTG miRNA GTGGATTCTCCTTCTATGAGTAC hsa-miR-376a* 7 29 3GA 0 0 qC AAAGGTAG AGTACATT miRNA