Mercurial > repos > lparsons > cutadapt
annotate test-data/cutadapt_rest_json.txt @ 41:5eb7e84243f2 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit fff23da3bceafb57de06af03d4c8ab4d66d4b098
author | iuc |
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date | Thu, 18 Jul 2024 09:54:30 +0000 |
parents | fe74900d6dc7 |
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rev | line source |
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39
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
1 "input": { |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
2 "path1": "cutadapt_rest_fa.fa", |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
3 "path2": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
4 "paired": false |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
5 }, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
6 "read_counts": { |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
7 "input": 5, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
8 "filtered": { |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
9 "too_short": 0, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
10 "too_long": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
11 "too_many_n": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
12 "too_many_expected_errors": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
13 "casava_filtered": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
14 "discard_trimmed": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
15 "discard_untrimmed": null |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
16 }, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
17 "output": 5, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
18 "reverse_complemented": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
19 "read1_with_adapter": 5, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
20 "read2_with_adapter": null |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
21 }, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
22 "basepair_counts": { |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
23 "input": 97, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
24 "input_read1": 97, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
25 "input_read2": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
26 "quality_trimmed": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
27 "quality_trimmed_read1": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
28 "quality_trimmed_read2": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
29 "poly_a_trimmed": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
30 "poly_a_trimmed_read1": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
31 "poly_a_trimmed_read2": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
32 "output": 35, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
33 "output_read1": 35, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
34 "output_read2": null |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
35 }, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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36 "adapters_read1": [ |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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37 { |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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38 "name": "1", |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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39 "total_matches": 5, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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40 "on_reverse_complement": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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41 "linked": false, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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42 "five_prime_end": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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43 "three_prime_end": { |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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44 "type": "regular_three_prime", |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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45 "sequence": "AAAGATG", |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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46 "error_rate": 0.1, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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47 "indels": true, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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48 "error_lengths": [7], |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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49 "matches": 5, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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50 "adjacent_bases": { |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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51 "A": 0, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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52 "C": 0, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
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53 "G": 5, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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54 "T": 0, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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55 "": 0 |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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56 }, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
57 "dominant_adjacent_base": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
58 "trimmed_lengths": [ |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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59 {"len": 7, "expect": 0.0, "counts": [1]}, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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60 {"len": 12, "expect": 0.0, "counts": [1]}, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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61 {"len": 14, "expect": 0.0, "counts": [2]}, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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62 {"len": 15, "expect": 0.0, "counts": [1]} |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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63 ] |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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64 } |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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65 } |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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66 ], |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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67 "adapters_read2": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
|
68 "poly_a_trimmed_read1": null, |
fe74900d6dc7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff
changeset
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69 "poly_a_trimmed_read2": null |