annotate test-data/cutadapt_rest_json.txt @ 41:5eb7e84243f2 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit fff23da3bceafb57de06af03d4c8ab4d66d4b098
author iuc
date Thu, 18 Jul 2024 09:54:30 +0000
parents fe74900d6dc7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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39
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
1 "input": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
2 "path1": "cutadapt_rest_fa.fa",
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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3 "path2": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
4 "paired": false
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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5 },
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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6 "read_counts": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
7 "input": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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8 "filtered": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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9 "too_short": 0,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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10 "too_long": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
11 "too_many_n": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
12 "too_many_expected_errors": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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13 "casava_filtered": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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14 "discard_trimmed": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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15 "discard_untrimmed": null
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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16 },
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
17 "output": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
18 "reverse_complemented": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
19 "read1_with_adapter": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
20 "read2_with_adapter": null
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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21 },
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
22 "basepair_counts": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
23 "input": 97,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
24 "input_read1": 97,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
25 "input_read2": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
26 "quality_trimmed": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
27 "quality_trimmed_read1": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
28 "quality_trimmed_read2": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
29 "poly_a_trimmed": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
30 "poly_a_trimmed_read1": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
31 "poly_a_trimmed_read2": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
32 "output": 35,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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33 "output_read1": 35,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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34 "output_read2": null
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
35 },
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
36 "adapters_read1": [
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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37 {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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38 "name": "1",
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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39 "total_matches": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
40 "on_reverse_complement": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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41 "linked": false,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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42 "five_prime_end": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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43 "three_prime_end": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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44 "type": "regular_three_prime",
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
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45 "sequence": "AAAGATG",
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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46 "error_rate": 0.1,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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47 "indels": true,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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48 "error_lengths": [7],
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
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49 "matches": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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50 "adjacent_bases": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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51 "A": 0,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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52 "C": 0,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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53 "G": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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54 "T": 0,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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55 "": 0
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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56 },
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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diff changeset
57 "dominant_adjacent_base": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
58 "trimmed_lengths": [
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
59 {"len": 7, "expect": 0.0, "counts": [1]},
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
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60 {"len": 12, "expect": 0.0, "counts": [1]},
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
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61 {"len": 14, "expect": 0.0, "counts": [2]},
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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62 {"len": 15, "expect": 0.0, "counts": [1]}
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
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63 ]
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
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64 }
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
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65 }
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
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66 ],
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
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67 "adapters_read2": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
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68 "poly_a_trimmed_read1": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
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69 "poly_a_trimmed_read2": null