Mercurial > repos > lparsons > cutadapt

comparison cutadapt.xml @ 14:c76ee709ffb9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 32b4794bb410494ffcfa0da397aaca7fd830a705
author iuc
date Sun, 05 Aug 2018 04:59:53 -0400
parents f5fdf41c08b8
children 660cffd8d92a
comparison
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13:f5fdf41c08b8 14:c76ee709ffb9
1 <tool id="cutadapt" name="Cutadapt" version="1.16.1" profile="17.09"> 1 <tool id="cutadapt" name="Cutadapt" version="1.16.2" profile="17.09">
2 <description>Remove adapter sequences from Fastq/Fasta</description> 2 <description>Remove adapter sequences from Fastq/Fasta</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
25 #set input_2 = $library.input_2 25 #set input_2 = $library.input_2
26 #else if $library_type == 'paired_collection' 26 #else if $library_type == 'paired_collection'
27 #set paired = True 27 #set paired = True
28 #set input_1 = $library.input_1.forward 28 #set input_1 = $library.input_1.forward
29 #set input_2 = $library.input_1.reverse 29 #set input_2 = $library.input_1.reverse
30 #set read1 = re.sub('[^\w\-\s]', '_', str($library.input_1.name)) 30 #set read1 = re.sub('[^\w\-\s]', '_', str($library.input_1.name)) + "_1"
31 #set read2 = re.sub('[^\w\-\s]', '_', str($library.input_1.name)) + "_2"
31 #else 32 #else
32 #set input_1 = $library.input_1 33 #set input_1 = $library.input_1
33 #set read1 = re.sub('[^\w\-\s]', '_', str($library.input_1.element_identifier)) 34 #set read1 = re.sub('[^\w\-\s]', '_', str($library.input_1.element_identifier))
34 #end if 35 #end if
35 36