Mercurial > repos > lparsons > cutadapt
diff cutadapt.xml @ 19:49370cb85f0f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 6318c53e772ed592862729f3048ed9bd3a711969
| author | iuc |
|---|---|
| date | Tue, 18 Dec 2018 14:09:53 -0500 |
| parents | 5c7e7d905b33 |
| children | e4691e1589d3 |
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--- a/cutadapt.xml Thu Dec 13 20:54:04 2018 -0500 +++ b/cutadapt.xml Tue Dec 18 14:09:53 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="cutadapt" name="Cutadapt" version="1.16.4" profile="17.09"> +<tool id="cutadapt" name="Cutadapt" version="1.16.5" profile="17.09"> <description>Remove adapter sequences from Fastq/Fasta</description> <macros> <import>macros.xml</import> @@ -444,16 +444,8 @@ <section name="r1" > <repeat name="front_adapters"> <conditional name="front_adapter_source"> - <param name="front_adapter_source_list" value="user"/> - <param name="front_adapter_name" value="A1" /> - <param name="front_adapter" value="^GTCGGTAA" /> - </conditional> - </repeat> - <repeat name="front_adapters"> - <conditional name="front_adapter_source"> - <param name="front_adapter_source_list" value="user"/> - <param name="front_adapter_name" value="A2" /> - <param name="front_adapter" value="^AGGTCACT" /> + <param name="front_adapter_source_list" value="file"/> + <param name="front_adapter_file" ftype="fasta" value="barcodes.fasta" /> </conditional> </repeat> </section> @@ -499,7 +491,7 @@ - FASTQ.GZ, FASTQ.BZ2, FASTQ or FASTA -To trim an adapter, input the ADAPTER sequence e.g. AACCGGTT (with the characters: **$**, **^**, **...**, if anchored or linked). +To trim an adapter, input the ADAPTER sequence in plain text or in a FASTA file e.g. AACCGGTT (with the characters: **$**, **^**, **...**, if anchored or linked). ============================================= =================== **Option** **Sequence**