Mercurial > repos > lparsons > cutadapt

view tool_dependencies.xml @ 8:2d6671b10919 draft

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Updated to support cutadapt version 1.1 (also include automatic dependency installation)
author lparsons
date Mon, 26 Nov 2012 17:37:26 -0500
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children 93d58ffe39f1
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<?xml version="1.0"?>
<tool_dependency>
    <package name="cutadapt" version="1.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://pypi.python.org/packages/source/c/cutadapt/cutadapt-1.1.tar.gz</action>
                <action type="shell_command">python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
                <action type="set_environment">
                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>