# HG changeset patch
# User iuc
# Date 1533459593 14400
# Node ID c76ee709ffb926e94b879c6e6a92d83249c1e4ca
# Parent  f5fdf41c08b8b8205aab4bb59a5db060fa40f71d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 32b4794bb410494ffcfa0da397aaca7fd830a705

diff -r f5fdf41c08b8 -r c76ee709ffb9 cutadapt.xml
--- a/cutadapt.xml	Tue Jun 12 15:38:04 2018 -0400
+++ b/cutadapt.xml	Sun Aug 05 04:59:53 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="cutadapt" name="Cutadapt" version="1.16.1" profile="17.09">
+<tool id="cutadapt" name="Cutadapt" version="1.16.2" profile="17.09">
     <description>Remove adapter sequences from Fastq/Fasta</description>
     <macros>
         <import>macros.xml</import>
@@ -27,7 +27,8 @@
 #set paired = True
 #set input_1 = $library.input_1.forward
 #set input_2 = $library.input_1.reverse
-#set read1 = re.sub('[^\w\-\s]', '_', str($library.input_1.name))
+#set read1 = re.sub('[^\w\-\s]', '_', str($library.input_1.name)) + "_1"
+#set read2 = re.sub('[^\w\-\s]', '_', str($library.input_1.name)) + "_2"
 #else
 #set input_1 = $library.input_1
 #set read1 = re.sub('[^\w\-\s]', '_', str($library.input_1.element_identifier))