Mercurial > repos > lparsons > cutadapt
changeset 2:f6b94b76d16b
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| author | Lance Parsons <lparsons@princeton.edu> |
|---|---|
| date | Mon, 16 May 2011 16:34:09 -0400 |
| parents | 50cdd8870607 |
| children | 7ed26fc9fa8a |
| files | cutadapt.xml |
| diffstat | 1 files changed, 1 insertions(+), 3 deletions(-) [+] |
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--- a/cutadapt.xml Fri May 13 16:17:49 2011 -0400 +++ b/cutadapt.xml Mon May 16 16:34:09 2011 -0400 @@ -109,8 +109,6 @@ cutadapt uses a simple semi-global alignment algorithm, without any special optimizations. For speed, the algorithm is implemented as a Python extension module in calignmodule.c. -The program is sufficiently fast for my purposes, but speedups should be simple to achieve. - **Partial adapter matches** @@ -146,7 +144,7 @@ If, on the other hand, your adapter can also be ligated to the 5' end (on purpose or by accident), you should tell cutadapt so by using the *5' or 3' (Anywhere) -Adapters parameter. It will then use a different alignment algorithm and +Adapters* parameter. It will then use a different alignment algorithm and correctly trim adapters that appear in the beginning of a read. An adapter specified this way will also be found if it appears only partially in the beginning of a read. For example, these sequences