changeset 2:f6b94b76d16b

Update help
author Lance Parsons <lparsons@princeton.edu>
date Mon, 16 May 2011 16:34:09 -0400
parents 50cdd8870607
children 7ed26fc9fa8a
files cutadapt.xml
diffstat 1 files changed, 1 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/cutadapt.xml	Fri May 13 16:17:49 2011 -0400
+++ b/cutadapt.xml	Mon May 16 16:34:09 2011 -0400
@@ -109,8 +109,6 @@
 cutadapt uses a simple semi-global alignment algorithm, without any special optimizations.
 For speed, the algorithm is implemented as a Python extension module in calignmodule.c.
 
-The program is sufficiently fast for my purposes, but speedups should be simple to achieve.
-
 
 **Partial adapter matches**
 
@@ -146,7 +144,7 @@
 
 If, on the other hand, your adapter can also be ligated to the 5' end (on
 purpose or by accident), you should tell cutadapt so by using the *5' or 3' (Anywhere)
-Adapters parameter. It will then use a different alignment algorithm and
+Adapters* parameter. It will then use a different alignment algorithm and
 correctly trim adapters that appear in the beginning of a read. An adapter
 specified this way will also be found if it appears only partially in the
 beginning of a read. For example, these sequences