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annotate tool_dependencies.xml @ 0:e6f1c31279db draft

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Initial version with fastq-join
author Lance Parsons <lparsons@princeton.edu>
date Thu, 20 Sep 2012 18:59:38 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="ea-utils" version="1.1.2-469">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://ea-utils.googlecode.com/files/ea-utils.1.1.2-469.tar.gz</action>
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7 <!-- sam-stats and varcall require an extra Bamtools library and we don't need them, so skip -->
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8 <action type="shell_command">sed -i.bak 's/sam-stats varcall$//' Makefile</action>
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9 <action type="shell_command">PREFIX=$INSTALL_DIR make install</action>
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10 <action type="set_environment">
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11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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12 </action>
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13 </actions>
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14 </install>
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15 <readme>
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16 </readme>
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17 </package>
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18 </tool_dependency>