annotate test-data/testout.txt @ 3:f0d19a935325 draft default tip

Uploaded
author lparsons
date Tue, 20 Nov 2012 16:01:20 -0500
parents cf4b5125a835
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
1 reads 100
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
2 version 1.32
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
3 mapped reads 11
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
4 mapped bases 377
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
5 phred 33
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
6 forward 0
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
7 reverse 11
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
8 len max 48
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
9 len mean 34.2727
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
10 len stdev 9.4137
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
11 mapq mean 255.0000
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
12 mapq stdev 0.0000
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
13 mapq Q1 255.00
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
14 mapq median 255.00
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
15 mapq Q3 255.00
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
16 snp rate 0.000000
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
17 pct mismatch 0.0000
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
18 base qual mean 31.5650
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
19 base qual stdev 3.2627
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
20 %A 27.5862
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
21 %C 34.4828
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
22 %G 16.7109
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
23 %T 21.2202
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
24 %PCRPRIMER1 8.753316
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
25 %PCRPRIMER1+1 45.358090
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
26 %PCRPRIMER1+2 9.814324
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
27 %PCRPRIMER2+1 36.074271
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
28 num ref seqs 4
cf4b5125a835 Uploaded
lparsons
parents:
diff changeset
29 num ref aligned 4