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view tool_dependencies.xml @ 0:e6f1c31279db draft

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Initial version with fastq-join
author Lance Parsons <lparsons@princeton.edu>
date Thu, 20 Sep 2012 18:59:38 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="ea-utils" version="1.1.2-469">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://ea-utils.googlecode.com/files/ea-utils.1.1.2-469.tar.gz</action>
                <!-- sam-stats and varcall require an extra Bamtools library and we don't need them, so skip -->
                <action type="shell_command">sed -i.bak 's/sam-stats varcall$//' Makefile</action>
                <action type="shell_command">PREFIX=$INSTALL_DIR make install</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>