# HG changeset patch
# User lparsons
# Date 1447436594 18000
# Node ID 32304398ef671252c1cfbfc4caf784c0f000dd97
# Parent  b7b3d008e2d33fa81db7bf7e08b63b74571c830f
planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/fastx_barcode_splitter_enhanced commit c3b0be52079831f6ae58ff64e42d8ff54ce501e4

diff -r b7b3d008e2d3 -r 32304398ef67 fastx_barcode_splitter.xml
--- a/fastx_barcode_splitter.xml	Tue Oct 27 11:47:52 2015 -0400
+++ b/fastx_barcode_splitter.xml	Fri Nov 13 12:43:14 2015 -0500
@@ -1,7 +1,7 @@
-<tool id="cshl_princeton_fastx_barcode_splitter" version="1.1" name="Barcode Splitter" force_history_refresh="True">
+<tool id="cshl_princeton_fastx_barcode_splitter" version="1.1" name="Barcode Splitter">
 	<description></description>
 	<command interpreter="bash"><![CDATA[
-fastx_barcode_splitter_galaxy_wrapper.sh $BARCODE $input "primary_$output.id" "$__new_file_path__" $input.extension --mismatches $mismatches --partial $partial
+fastx_barcode_splitter_galaxy_wrapper.sh $BARCODE $input "split/" $input.extension --mismatches $mismatches --partial $partial
 #if $refBarcodeLocation.barcodeLocation == "idxfile":
     --idxfile $refBarcodeLocation.idxfile
 #else:
@@ -39,7 +39,9 @@
 	</inputs>
 
 	<outputs>
-		<data format="html" name="output" />
+        <data format="html" name="output">
+            <discover_datasets pattern="__designation_and_ext__" directory="split" visible="true" label="${tool.name}: ${designation}"/>
+        </data>
 	</outputs>
 
     <tests>
@@ -50,7 +52,13 @@
 			<param name="barcodeLocation" value="bol" />
 			<param name="mismatches" value="2" />
 			<param name="partial" value="0" />
-			<output name="output" file="fastx_barcode_splitter1.out" />
+            <output name="output" file="fastx_barcode_splitter1.out">
+                <discovered_dataset designation="BC1" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC1.out" />
+                <discovered_dataset designation="BC2" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC2.out" />
+                <discovered_dataset designation="BC3" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC3.out" />
+                <discovered_dataset designation="BC4" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC4.out" />
+                <discovered_dataset designation="unmatched" ftype="fastqsolexa" file="fastx_barcode_splitter1_unmatched.out" />
+            </output>
 		</test>
 	</tests>
 
@@ -85,7 +93,7 @@
 
 	<!-- FASTX-barcode-splitter is part of the FASTX-toolkit, by A.Gordon (gordon@cshl.edu) -->
 	<citations>
-	    <citation type="bibtex">
+        <citation type="bibtex">
 			@misc{gordon_fastx-toolkit_????,
 				title = {{FASTX}-{Toolkit}},
 				url = {http://hannonlab.cshl.edu/fastx_toolkit/index.html},
diff -r b7b3d008e2d3 -r 32304398ef67 fastx_barcode_splitter_galaxy_wrapper.sh
--- a/fastx_barcode_splitter_galaxy_wrapper.sh	Tue Oct 27 11:47:52 2015 -0400
+++ b/fastx_barcode_splitter_galaxy_wrapper.sh	Fri Nov 13 12:43:14 2015 -0500
@@ -19,7 +19,8 @@
 #  Modified by Lance Parsons (lparsons@princeton.edu)
 #	2011-03-15	Adapted to allow galaxy to determine filetype
 #	2015-10-21	Updated to make compatible with OSX (BSD sed)
-#
+#   2015-11-13  Removed LIBRARY_NAME, no longer needed
+
 #This is a shell script wrapper for 'fastx_barcode_splitter.pl'
 #
 # 1. Output files are saved at the dataset's files_path directory.
@@ -29,28 +30,22 @@
 #    (so lazy users can just click on the URLs and get their files)
 
 if [ "$1x" = "x" ]; then
-	echo "Usage: $0 [BARCODE FILE] [FASTQ FILE] [LIBRARY_NAME] [OUTPUT_PATH] [FILETYPE]" >&2
+	echo "Usage: $0 [BARCODE FILE] [FASTQ FILE] [OUTPUT_PATH] [FILETYPE]" >&2
 	exit 1
 fi
 
 BARCODE_FILE="$1"
 FASTQ_FILE="$2"
-LIBNAME="$3"
-OUTPUT_PATH="$4"
-FILETYPE="$5"
-shift 5
+OUTPUT_PATH="$3"
+FILETYPE="$4"
+shift 4
 # The rest of the parameters are passed to the split program
 
 if [ "${OUTPUT_PATH}x" = "x" ]; then
-	echo "Usage: $0 [BARCODE FILE] [FASTQ FILE] [LIBRARY_NAME] [OUTPUT_PATH] [FILETYPE]" >&2
+	echo "Usage: $0 [BARCODE FILE] [FASTQ FILE] [OUTPUT_PATH] [FILETYPE]" >&2
 	exit 1
 fi
 
-#Sanitize library name, make sure we can create a file with this name
-LIBNAME=${LIBNAME%.gz}
-LIBNAME=${LIBNAME%.txt}
-LIBNAME=$(echo "$LIBNAME" | tr -cd '[:alnum:]_')
-
 if [ ! -r "$FASTQ_FILE" ]; then
 	echo "Error: Input file ($FASTQ_FILE) not found!" >&2
 	exit 1
@@ -65,24 +60,20 @@
 	exit 1
 fi
 
-PUBLICURL=""
 BASEPATH="$OUTPUT_PATH/"
-#PREFIX="$BASEPATH"`date "+%Y-%m-%d_%H%M__"`"${LIBNAME}__"
-PREFIX="$BASEPATH""${LIBNAME}_"
-SUFFIX="_visible.$FILETYPE"
-DIRECTORY=$(cd `dirname $0` && pwd)
+PREFIX="$BASEPATH"
+SUFFIX=".$FILETYPE"
+DIRECTORY="$(cd "$(dirname "$0")" && pwd)"
 
-RESULTS=`gzip -cdf "$FASTQ_FILE" | $DIRECTORY/fastx_barcode_splitter.pl --bcfile "$BARCODE_FILE" --prefix "$PREFIX" --suffix "$SUFFIX" "$@"`
+RESULTS=$(gzip -cdf "$FASTQ_FILE" | "$DIRECTORY/fastx_barcode_splitter.pl" --bcfile "$BARCODE_FILE" --prefix "$PREFIX" --suffix "$SUFFIX" "$@")
 if [ $? != 0 ]; then
 	echo "error"
 fi
 
 #
-# Convert the textual tab-separated table into simple HTML table,
-# with the local path replaces with a valid URL
-#HTMLSUMMARY=${PREFIX}stats_visible_html
+# Convert the textual tab-separated table into simple HTML table
 echo "<html><body><table border=1>"
-echo "$RESULTS" | sed "s|$BASEPATH\\(.*\\)|<a href=\"\\1\">\\1</a>|" | \
+echo "$RESULTS" | sed "s|$BASEPATH\\(.*\\)|\\1|" | \
 perl -n -e '$_ =~ s|\t|</td><td>|g; print "<tr><td>\n$_</td></tr>\n"'
 echo "<p>"
 echo "</table></body></html>"
diff -r b7b3d008e2d3 -r 32304398ef67 test-data/.fastx_barcode_splitter1.out.swp
Binary file test-data/.fastx_barcode_splitter1.out.swp has changed
diff -r b7b3d008e2d3 -r 32304398ef67 test-data/fastx_barcode_splitter1.out
--- a/test-data/fastx_barcode_splitter1.out	Tue Oct 27 11:47:52 2015 -0400
+++ b/test-data/fastx_barcode_splitter1.out	Fri Nov 13 12:43:14 2015 -0500
@@ -3,19 +3,19 @@
 Barcode</td><td>Count</td><td>Location
 </td></tr>
 <tr><td>
-BC1</td><td>11</td><td><a href="primary_3_BC1_visible.fastqsolexa">primary_3_BC1_visible.fastqsolexa</a>
+BC1</td><td>11</td><td>BC1.fastqsolexa
 </td></tr>
 <tr><td>
-BC2</td><td>12</td><td><a href="primary_3_BC2_visible.fastqsolexa">primary_3_BC2_visible.fastqsolexa</a>
+BC2</td><td>12</td><td>BC2.fastqsolexa
 </td></tr>
 <tr><td>
-BC3</td><td>9</td><td><a href="primary_3_BC3_visible.fastqsolexa">primary_3_BC3_visible.fastqsolexa</a>
+BC3</td><td>9</td><td>BC3.fastqsolexa
 </td></tr>
 <tr><td>
-BC4</td><td>1</td><td><a href="primary_3_BC4_visible.fastqsolexa">primary_3_BC4_visible.fastqsolexa</a>
+BC4</td><td>1</td><td>BC4.fastqsolexa
 </td></tr>
 <tr><td>
-unmatched</td><td>9</td><td><a href="primary_3_unmatched_visible.fastqsolexa">primary_3_unmatched_visible.fastqsolexa</a>
+unmatched</td><td>9</td><td>unmatched.fastqsolexa
 </td></tr>
 <tr><td>
 total</td><td>42
diff -r b7b3d008e2d3 -r 32304398ef67 test-data/fastx_barcode_splitter1_BC1.out
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fastx_barcode_splitter1_BC1.out	Fri Nov 13 12:43:14 2015 -0500
@@ -0,0 +1,44 @@
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GATCTAGTAGTAGTAGA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GATCTAGTAGTAGTAGA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GATCTAGTAGTAGTAGA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GATCTAGTAGTAGTAGA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GATCTAGTAGTAGTAGA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGTCTAGTAGTAGTAGA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGTCTTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGTCTGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGTATTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGTATTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGTATTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 test-data/fastx_barcode_splitter1_BC2.out
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fastx_barcode_splitter1_BC2.out	Fri Nov 13 12:43:14 2015 -0500
@@ -0,0 +1,48 @@
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCGTTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCGTGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCGTTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCGTGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCTTTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCTTGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCTTGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCTTTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCTCGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCTCGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCTCTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+ATCTCGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 test-data/fastx_barcode_splitter1_BC3.out
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fastx_barcode_splitter1_BC3.out	Fri Nov 13 12:43:14 2015 -0500
@@ -0,0 +1,36 @@
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGAATGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGAATTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGAATGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGAATTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGAATGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGAATTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGAATGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGAATTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGAATGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 test-data/fastx_barcode_splitter1_BC4.out
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fastx_barcode_splitter1_BC4.out	Fri Nov 13 12:43:14 2015 -0500
@@ -0,0 +1,4 @@
+@CSHL_3_FC042AGLLWW:1:2:7:203
+TGTCTGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
\ No newline at end of file
diff -r b7b3d008e2d3 -r 32304398ef67 test-data/fastx_barcode_splitter1_unmatched.out
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fastx_barcode_splitter1_unmatched.out	Fri Nov 13 12:43:14 2015 -0500
@@ -0,0 +1,36 @@
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGTACGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGTACTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+GGTACGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+TAGTTGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+TAGTTGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+TAGTTTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+TAGTTTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+TAGTTGAGTATACACAT
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
+@CSHL_3_FC042AGLLWW:1:2:7:203
+TAGTTTCTCTATGTACA
++CSHL_3_FC042AGLLWW:1:2:7:203
+aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 testoutput/fastx_barcode_splitter1.out
--- a/testoutput/fastx_barcode_splitter1.out	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,24 +0,0 @@
-<html><body><table border=1>
-<tr><td>
-Barcode</td><td>Count</td><td>Location
-</td></tr>
-<tr><td>
-BC1</td><td>11</td><td><a href="primary_3_BC1_visible_fastqsolexa">primary_3_BC1_visible_fastqsolexa<a>
-</td></tr>
-<tr><td>
-BC2</td><td>12</td><td><a href="primary_3_BC2_visible_fastqsolexa">primary_3_BC2_visible_fastqsolexa<a>
-</td></tr>
-<tr><td>
-BC3</td><td>9</td><td><a href="primary_3_BC3_visible_fastqsolexa">primary_3_BC3_visible_fastqsolexa<a>
-</td></tr>
-<tr><td>
-BC4</td><td>1</td><td><a href="primary_3_BC4_visible_fastqsolexa">primary_3_BC4_visible_fastqsolexa<a>
-</td></tr>
-<tr><td>
-unmatched</td><td>9</td><td><a href="primary_3_unmatched_visible_fastqsolexa">primary_3_unmatched_visible_fastqsolexa<a>
-</td></tr>
-<tr><td>
-total</td><td>42
-</td></tr>
-<p>
-</table></body></html>
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/BC1
--- a/tmp/BC1	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,32 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTCTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTCTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/BC2
--- a/tmp/BC2	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,32 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/BC3
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/BC4
--- a/tmp/BC4	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TGTCTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
\ No newline at end of file
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/tmp_BC1_visible.fastqsanger
--- a/tmp/tmp_BC1_visible.fastqsanger	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,44 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTCTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTCTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/tmp_BC1_visible_fastqsanger
--- a/tmp/tmp_BC1_visible_fastqsanger	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,44 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GATCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTCTAGTAGTAGTAGA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTCTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTCTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/tmp_BC2_visible.fastqsanger
--- a/tmp/tmp_BC2_visible.fastqsanger	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,48 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/tmp_BC2_visible_fastqsanger
--- a/tmp/tmp_BC2_visible_fastqsanger	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,48 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCGTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/tmp_BC3_visible.fastqsanger
--- a/tmp/tmp_BC3_visible.fastqsanger	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,36 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/tmp_BC3_visible_fastqsanger
--- a/tmp/tmp_BC3_visible_fastqsanger	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,36 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/tmp_BC4_visible.fastqsanger
--- a/tmp/tmp_BC4_visible.fastqsanger	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TGTCTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
\ No newline at end of file
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/tmp_BC4_visible_fastqsanger
--- a/tmp/tmp_BC4_visible_fastqsanger	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TGTCTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
\ No newline at end of file
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/tmp_unmatched_visible.fastqsanger
--- a/tmp/tmp_unmatched_visible.fastqsanger	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,36 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTACGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTACTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTACGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/tmp_unmatched_visible_fastqsanger
--- a/tmp/tmp_unmatched_visible_fastqsanger	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,36 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTACGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTACTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTACGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 tmp/unmatched
--- a/tmp/unmatched	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,100 +0,0 @@
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTACGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTACTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGTACGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-ATCTCGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-GGAATGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTGAGTATACACAT
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
-@CSHL_3_FC042AGLLWW:1:2:7:203
-TAGTTTCTCTATGTACA
-+CSHL_3_FC042AGLLWW:1:2:7:203
-aab^V^aU]`aa^aZaa
diff -r b7b3d008e2d3 -r 32304398ef67 tmp_stdio.txt
--- a/tmp_stdio.txt	Tue Oct 27 11:47:52 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-Barcode	Count	Location
-BC1	8	tmp/BC1
-BC2	8	tmp/BC2
-BC3	0	tmp/BC3
-BC4	1	tmp/BC4
-unmatched	25	tmp/unmatched
-total	42