Mercurial > repos > lparsons > freebayes
comparison freebayes.xml @ 5:c1f3ee7b5003 draft
Change requirement tags to package type and added version
| author | Lance Parsons <lparsons@princeton.edu> |
|---|---|
| date | Fri, 25 May 2012 13:09:44 -0400 |
| parents | 0df882474701 |
| children | 73e1e4d0b419 |
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| 4:0df882474701 | 5:c1f3ee7b5003 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="freebayes_wrapper_princeton" name="Call SNPS with Freebayes (beta)" version="0.9.0.a"> | 2 <tool id="freebayes_wrapper_princeton" name="Call SNPS with Freebayes (beta)" version="0.9.0.a"> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="binary">freebayes</requirement> | 4 <requirement type="package" version="0.9.0">freebayes</requirement> |
| 5 <requirement type="binary">samtools</requirement> | 5 <requirement type="package">samtools</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <description>Bayesian genetic variant detector</description> | 7 <description>Bayesian genetic variant detector</description> |
| 8 <version_string>freebayes -h | grep [Vv]ersion</version_string> | 8 <version_string>freebayes -h | grep [Vv]ersion</version_string> |
| 9 <command> | 9 <command> |
| 10 if [ "`freebayes -h | grep [Vv]ersion | awk '{print \$2}'`" != "0.9.0" ]; then | 10 if [ "`freebayes -h | grep [Vv]ersion | awk '{print \$2}'`" != "0.9.0" ]; then |