Mercurial > repos > lparsons > htseq_count
comparison htseq-count.xml @ 4:14bec14f4290
Added tool_dependencies.xml back, dependency installation requires Galaxy changeset 7621:108cda898646
| author | Lance Parsons <lparsons@princeton.edu> |
|---|---|
| date | Tue, 11 Sep 2012 17:45:23 -0400 |
| parents | f7a5b54a8d4f |
| children | 8a5d43b21c6e |
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| 3:f7a5b54a8d4f | 4:14bec14f4290 |
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| 1 <tool id="htseq_count" name="htseq-count" version="0.2"> | 1 <tool id="htseq_count" name="htseq-count" version="0.2"> |
| 2 <description> - Count aligned reads in a BAM file that overlap features in a GFF file</description> | 2 <description> - Count aligned reads in a BAM file that overlap features in a GFF file</description> |
| 3 <version_command>htseq-count -h | grep version | sed 's/^\(.*\)*\(version .*\)\./\2/'</version_command> | 3 <version_command>htseq-count -h | grep version | sed 's/^\(.*\)*\(version .*\)\./\2/'</version_command> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="1.6.2">numpy</requirement> | |
| 5 <requirement type="package" version="0.5.3p9">htseq</requirement> | 6 <requirement type="package" version="0.5.3p9">htseq</requirement> |
| 6 <requirement type="package" version="0.1.18">samtools</requirement> | 7 <requirement type="package" version="0.1.18">samtools</requirement> |
| 7 </requirements> | 8 </requirements> |
| 8 <command> | 9 <command> |
| 9 ##set up input files | 10 ##set up input files |