Mercurial > repos > lparsons > htseq_count
comparison tool_dependencies.xml @ 16:227f9d3f0e32 draft
Updated HTSeq package to version 0.6.1, fixed input format string, updated dependency definitions
| author | lparsons |
|---|---|
| date | Fri, 11 Apr 2014 15:05:28 -0400 |
| parents | 265ca0f35789 |
| children | d5edaf8dc974 |
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| 15:3ffe4e2572a7 | 16:227f9d3f0e32 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 | 3 |
| 4 <package name="numpy" version="1.7.1"> | 4 <package name="numpy" version="1.7.1"> |
| 5 <repository changeset_revision="028df1ddd7a2" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> | 5 <repository changeset_revision="0c288abd2a1e" name="package_numpy_1_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 6 </package> | 6 </package> |
| 7 | 7 |
| 8 <package name="samtools" version="0.1.19"> | 8 <package name="samtools" version="0.1.19"> |
| 9 <repository changeset_revision="00e17a794a2e" name="package_samtools_0_1_19" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> | 9 <repository changeset_revision="1ef76f8d8e52" name="package_samtools_0_1_19" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 10 </package> | 10 </package> |
| 11 | 11 |
| 12 <package name="picard" version="1.56.0"> | 12 <package name="htseq" version="0.6.1"> |
| 13 <repository changeset_revision="61e41d21cb6f" name="package_picard_1_56_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
| 14 </package> | |
| 15 | |
| 16 <package name="htseq" version="0.5.4p5"> | |
| 17 <install version="1.0"> | 13 <install version="1.0"> |
| 18 <actions> | 14 <actions> |
| 19 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p5.tar.gz</action> | 15 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action> |
| 20 <!-- populate the environment variables from the dependend repos --> | 16 <!-- populate the environment variables from the dependend repos --> |
| 21 <action type="set_environment_for_install"> | 17 <action type="set_environment_for_install"> |
| 22 <repository changeset_revision="028df1ddd7a2" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | 18 <repository changeset_revision="0c288abd2a1e" name="package_numpy_1_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu"> |
| 23 <package name="numpy" version="1.7.1" /> | 19 <package name="numpy" version="1.7.1" /> |
| 24 </repository> | 20 </repository> |
| 25 </action> | 21 </action> |
| 26 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> | 22 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> |
| 27 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> | 23 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> |