comparison tool_dependencies.xml @ 10:5d969cb56112

Version 0.3 - paried-end sorting is now built-in (uses Picard tools)

9:971e20519fb8

        </install>
        <readme>
            Compiling SAMtools requires the ncurses and zlib development libraries.
        </readme>
    </package>
</tool_dependency>

10:5d969cb56112

        </install>
        <readme>
            Compiling SAMtools requires the ncurses and zlib development libraries.
        </readme>
    </package>
    <package name="picard" version="1.56.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://downloads.sourceforge.net/project/picard/picard-tools/1.56/picard-tools-1.56.zip</action>
                <action type="move_directory_files">
                    <source_directory>picard-tools-1.56</source_directory>
                    <destination_directory>$INSTALL_DIR/jars</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>