Mercurial > repos > lparsons > htseq_count

diff htseq-count.xml @ 13:30bb8acb77a4

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Updated to v0.5.4p5, use repository dependencies.
author lparsons
date Tue, 05 Nov 2013 13:02:43 -0500
parents 62a1de8c8aae
children 3ffe4e2572a7
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--- a/htseq-count.xml	Mon Mar 11 12:44:45 2013 -0400
+++ b/htseq-count.xml	Tue Nov 05 13:02:43 2013 -0500
@@ -1,10 +1,10 @@
-<tool id="htseq_count" name="htseq-count" version="0.3.1">
+<tool id="htseq_count" name="htseq-count" version="0.3.2">
     <description> - Count aligned reads in a BAM file that overlap features in a GFF file</description>
     <version_command>htseq-count -h | grep version | sed 's/^\(.*\)*\(version .*\)\./\2/'</version_command>
     <requirements>
-        <requirement type="package" version="1.6.2">numpy</requirement>
-        <requirement type="package" version="0.5.4p1">htseq</requirement>
-        <requirement type="package" version="0.1.18">samtools</requirement>
+        <requirement type="package" version="1.7.1">numpy</requirement>
+        <requirement type="package" version="0.5.4p5">htseq</requirement>
+        <requirement type="package" version="0.1.19">samtools</requirement>
         <requirement type="package" version="1.56.0">picard</requirement> 
     </requirements>
     <command>
@@ -188,7 +188,7 @@
 
 The following figure illustrates the effect of these three modes:
 
-.. image:: /static/images/count_modes.png
+.. image:: $PATH_TO_IMAGES/count_modes.png
     :width: 500