Mercurial > repos > lparsons > htseq_count

diff htseq-count.xml @ 17:d5edaf8dc974 draft

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Fixed test output, added missing pysam dependency
author lparsons
date Fri, 11 Apr 2014 16:01:54 -0400
parents 227f9d3f0e32
children 3b3601a2a7c7
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line diff
--- a/htseq-count.xml	Fri Apr 11 15:05:28 2014 -0400
+++ b/htseq-count.xml	Fri Apr 11 16:01:54 2014 -0400
@@ -1,10 +1,11 @@
-<tool id="htseq_count" name="htseq-count" version="0.4">
+<tool id="htseq_count" name="htseq-count" version="0.4.1">
     <description> - Count aligned reads in a BAM file that overlap features in a GFF file</description>
     <version_command>htseq-count -h | grep version | sed 's/^\(.*\)*\(version .*\)\./\2/'</version_command>
     <requirements>
         <requirement type="package" version="1.7.1">numpy</requirement>
         <requirement type="package" version="0.6.1">htseq</requirement>
         <requirement type="package" version="0.1.19">samtools</requirement>
+        <requirement type="package" version="0.7.7">pysam</requirement>
     </requirements>
     <command>
     ##set up input files