Mercurial > repos > lparsons > sam_stats

view test-data/testout.txt @ 0:b9e7569a4438 draft

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Uploaded initial version with package dependency.
author lparsons
date Fri, 27 Jun 2014 15:36:01 -0400
parents
children da985dad64c0
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reads	100
version	1.32
mapped reads	11
mapped bases	377
phred	33
forward	0
reverse	11
len max	48
len mean	34.2727
len stdev	9.4137
mapq mean	255.0000
mapq stdev	0.0000
mapq Q1	255.00
mapq median	255.00
mapq Q3	255.00
snp rate	0.000000
pct mismatch	0.0000
base qual mean	31.5650
base qual stdev	3.2627
%A	27.5862
%C	34.4828
%G	16.7109
%T	21.2202
%PCRPRIMER1	8.753316
%PCRPRIMER1+1	45.358090
%PCRPRIMER1+2	9.814324
%PCRPRIMER2+1	36.074271
num ref seqs	4
num ref aligned	4