diff PsiCLASS-1.0.2/samtools-0.1.19/INSTALL @ 0:903fc43d6227 draft default tip

Uploaded

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+++ b/PsiCLASS-1.0.2/samtools-0.1.19/INSTALL	Fri Mar 26 16:52:45 2021 +0000
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+System Requirements
+===================
+
+SAMtools depends on the zlib library <http://www.zlib.net>. Version 1.2.3+ is
+preferred and with 1.2.3+ you can compile razip and use it to compress a FASTA
+file. SAMtools' faidx is able to index a razip-compressed FASTA file to save
+diskspace. Older zlib also works with SAMtools, but razip cannot be compiled.
+
+The text-based viewer (tview) requires the GNU ncurses library
+<http://www.gnu.org/software/ncurses/>, which comes with Mac OS X and most of
+the modern Linux/Unix distributions. If you do not have this library installed,
+you can still compile the rest of SAMtools by manually changing:
+`-D_CURSES_LIB=1' to `-D_CURSES_LIB=0' at the line starting with `DFLAGS=', and
+comment out the line starting with `LIBCURSES='.
+
+
+Compilation
+===========
+
+Type `make' to compile samtools. If you have zlib >= 1.2.2.1, you can compile
+razip with `make razip'.
+
+
+Installation
+============
+
+Copy `samtools', `bcftools/bcftools' and other executables/scripts in `misc' to
+a location you want (e.g. a directory in your $PATH). You may also copy
+`samtools.1' and `bcftools/bcftools.1' to a directory in your $MANPATH such
+that the `man' command may find the manual.