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author lsong10
date Fri, 26 Mar 2021 16:52:45 +0000
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#ifndef ERRMOD_H
#define ERRMOD_H

#include <stdint.h>

struct __errmod_coef_t;

typedef struct {
	double depcorr;
	struct __errmod_coef_t *coef;
} errmod_t;

errmod_t *errmod_init(float depcorr);
void errmod_destroy(errmod_t *em);

/*
	n: number of bases
	m: maximum base
	bases[i]: qual:6, strand:1, base:4
	q[i*m+j]: phred-scaled likelihood of (i,j)
 */
int errmod_cal(const errmod_t *em, int n, int m, uint16_t *bases, float *q);

#endif