diff lucas_teste/lucas_teste.xml @ 0:f93b91785d08 draft default tip

first tool

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/lucas_teste/lucas_teste.xml	Thu Mar 12 16:17:18 2015 -0400
@@ -0,0 +1,111 @@
+<tool id="lucas_teste" name="lucas_teste" version="0.01">
+<description>testando o tool factory 2</description>
+
+<command interpreter="python">
+
+            lucas_teste.py --script_path "$runMe" --interpreter "python" 
+                --tool_name "lucas_teste"
+                
+
+--input_formats None
+#for intab in $input1:
+--input_tab "${intab},${intab.name}"
+#end for
+
+                 --output_dir "./" --output_tab "$output1"
+            
+</command>
+<inputs>
+<param name="input_tab" multiple="true"  type="data" format="None" label="Select one or more None input files from your history"
+                    help="Multiple inputs may be selected assuming the script can deal with them..."/> 
+<param name="job_name" type="text" size="60" label="Supply a name for the outputs to remind you what they contain" value="lucas_teste"/> 
+
+
+</inputs>
+<outputs>
+ <data format="txt" name="output1" label="${job_name}"/>
+
+</outputs>
+<configfiles>
+<configfile name="runMe">
+ import sys
+ import os
+ import argparse
+ 
+ argp=argparse.ArgumentParser()
+ argp.add_argument('--innames',default=None)
+ argp.add_argument('--inpaths',default=None)
+ argp.add_argument('--outpath',default=None)
+ argp.add_argument('--case_sensitive',default=0)
+ argp.add_argument('--additional_parameters',default=[],action="append")
+ argp.add_argument('otherargs', nargs=argparse.REMAINDER)
+ args = argp.parse_args()
+ 
+ 
+ f= open(args.outpath,'w')
+ if args.case_sensitive == 0:
+ 	f.write('teste:\t'.join(args.innames.split(",")).upper())
+ else:
+ 	f.write('teste:\t'.join(args.innames.split(",")))
+ f.close()
+</configfile>
+</configfiles>
+<tests>
+
+            <test>
+            <param name="input_tab" value="dataset_1.dat,dataset_2.dat,dataset_5.dat,dataset_8.dat,dataset_13.dat,dataset_14.dat,dataset_15.dat,dataset_16.dat,dataset_17.dat,dataset_19.dat" />
+            <param name="job_name" value="test1"/>
+            <param name="runMe" value="$runMe"/>
+            <output name="output1="lucas_teste_test1_output.xls" ftype="tabular"/>
+            
+            </test>
+            
+</tests>
+<help>
+
+
+**What it Does**
+nada de mais
+
+**Script**
+Pressing execute will run the following code over your input file and generate some outputs in your history::
+
+
+   import sys
+ import os
+ import argparse
+ 
+ argp=argparse.ArgumentParser()
+ argp.add_argument('--innames',default=None)
+ argp.add_argument('--inpaths',default=None)
+ argp.add_argument('--outpath',default=None)
+ argp.add_argument('--case_sensitive',default=0)
+ argp.add_argument('--additional_parameters',default=[],action="append")
+ argp.add_argument('otherargs', nargs=argparse.REMAINDER)
+ args = argp.parse_args()
+ 
+ 
+ f= open(args.outpath,'w')
+ if args.case_sensitive == 0:
+ 	f.write('teste:\t'.join(args.innames.split(",")).upper())
+ else:
+ 	f.write('teste:\t'.join(args.innames.split(",")))
+ f.close()
+
+**Attribution**
+This Galaxy tool was created by [e-mail] at 12/03/2015 15:46:32
+using the Galaxy Tool Factory.
+
+See https://bitbucket.org/fubar/galaxytoolfactory for details of that project
+Please cite: Creating re-usable tools from scripts: The Galaxy Tool Factory. Ross Lazarus; Antony Kaspi; Mark Ziemann; The Galaxy Team. 
+Bioinformatics 2012; doi: 10.1093/bioinformatics/bts573
+
+
+This tool was autogenerated from a user provided script using the Galaxy Tool Factory 2
+https://toolshed.g2.bx.psu.edu/view/fubar/tool_factory_2
+</help>
+<citations>
+    
+    <citation type="doi">10.1093/bioinformatics/bts573</citation>
+</citations>
+</tool>