comparison galaxy_stubs/PropertyModifier.xml @ 2:605370bc1def draft default tip

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2:605370bc1def

<?xml version='1.0' encoding='UTF-8'?>
<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
<!--Proposed Tool Section: [Preparation]-->
<tool id="PropertyModifier" name="PropertyModifier" version="1.1.0">
  <description>modify molecule property tags</description>
  <macros>
    <token name="@EXECUTABLE@">PropertyModifier</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>PropertyModifier

#if $param_i:
  -i $param_i
#end if
#if $param_o:
  -o $param_o
#end if
#if $param_mode:
  -mode
  #if " " in str($param_mode):
    "$param_mode"
  #else
    $param_mode
  #end if
#end if
#if $param_name:
  -name     "$param_name"
#end if
#if $param_value:
  -value     "$param_value"
#end if
#if $param_new_name:
  -new_name     "$param_new_name"
#end if
#if $param_rm:
  -rm $param_rm
#end if
</command>
  <inputs>
    <param name="param_i" type="data" format="mol2,sdf,drf" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="input file" help="(-i) "/>
    <param name="param_mode" type="select" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="'delete', 'add' or 'rename' properties" help="(-mode) ">
      <option value="add">add</option>
      <option value=" rename"> rename</option>
      <option value=" delete"> delete</option>
    </param>
    <param name="param_name" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="property name ('all' will erase all properties if in delete-mode)" help="(-name) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>
          <remove value="&quot;"/>
        </valid>
      </sanitizer>
    </param>
    <param name="param_value" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="property value (in case of prop. adding only)" help="(-value) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>
          <remove value="&quot;"/>
        </valid>
      </sanitizer>
    </param>
    <param name="param_new_name" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="new property name (in case of renaming only)" help="(-new_name) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>
          <remove value="&quot;"/>
        </valid>
      </sanitizer>
    </param>
    <param name="param_rm" type="integer" min="0" max="1" optional="True" value="0" label="remove input file when finished" help="(-rm) "/>
  </inputs>
  <expand macro="advanced_options"/>
  <outputs>
    <data name="param_o" metadata_source="param_i" format="input"/>
  </outputs>
  <help>With this tools you can add, rename or delete molecule property tags.
These tags can for example contain information about scores, binding-free-energy, IDs or names for the resp. molecule.
The output of this tool is a molecule file in which the desired property tags have been added/renamed/deleted (as chosen).

</help>
</tool>