Mercurial > repos > lxue > ageseq
comparison AGEseq.xml @ 6:8d5914e21ec8 draft
Uploaded
author | lxue |
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date | Sat, 16 May 2015 13:38:15 -0400 |
parents | 6f05e59194b9 |
children |
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5:6f05e59194b9 | 6:8d5914e21ec8 |
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6 <param format="" name="read" type="data" label="Read file (Sanger or NGS)" help="Select read file in fasta or fastq format." /> | 6 <param format="" name="read" type="data" label="Read file (Sanger or NGS)" help="Select read file in fasta or fastq format." /> |
7 | 7 |
8 | 8 |
9 <param name="mismatch" type="float" value="0.1" label="Mismatch Rate Cutoff" help="Mismatch rate to filter low quality alignment, default 0.1 (10 %)" /> | 9 <param name="mismatch" type="float" value="0.1" label="Mismatch Rate Cutoff" help="Mismatch rate to filter low quality alignment, default 0.1 (10 %)" /> |
10 <param name="minAbundance" type="integer" value="0" label="Abundance Cutoff" help="Cutoff to filter reads with low abundance, default 0" /> | 10 <param name="minAbundance" type="integer" value="0" label="Abundance Cutoff" help="Cutoff to filter reads with low abundance, default 0" /> |
11 <param name="wtNum" type="integer" value="20" label="Numbers of WT-like records to be reported" help="Report top xx WT like records, default 20" /> | 11 <param name="wtNum" type="integer" value="20" label="Number of WT-like records to be reported" help="Report top xx WT like records, default 20" /> |
12 <param name="indelNum" type="integer" value="50" label="Numbers of records with indel to be reported" help="Report top xx records with indel, default 50" /> | 12 <param name="indelNum" type="integer" value="50" label="Number of records with indel(s) to be reported" help="Report top xx records with indel(s), default 50" /> |
13 | 13 |
14 </inputs> | 14 </inputs> |
15 | 15 |
16 <outputs> | 16 <outputs> |
17 <data format="txt" name="output" /> | 17 <data format="txt" name="output" /> |