Mercurial > repos > malbuquerque > delly

comparison package/tool_dependencies.xml @ 4:aedebcf9d2c2 draft

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author malbuquerque
date Tue, 20 Jan 2015 14:59:12 -0500
parents b833f6538a4c
children f7f19d0255e0
comparison
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3:b833f6538a4c 4:aedebcf9d2c2
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 3
4 <package name="boost" version="1.53"> 4 <package name="boost" version="1.53.0">
5 <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 5 <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
6 </package> 6 </package>
7 7
8 <package name="bamtools" version="2.3.0"> 8 <package name="bamtools" version="2.3.0">
9 <repository changeset_revision="ad46b5210186" name="package_bamtools_2_3_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" /> 9 <repository changeset_revision="ad46b5210186" name="package_bamtools_2_3_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" />
15 15
16 <package name="delly" version="0.6.1"> 16 <package name="delly" version="0.6.1">
17 <install version="1.0"> 17 <install version="1.0">
18 <actions> 18 <actions>
19 <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action> 19 <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action>
20 <action type="shell_command">git clone https://github.com/morinlab/galaxy_tools.git</action> 20 <action type="download_by_url">https://raw.githubusercontent.com/morinlab/galaxy_tools/master/delly/Makefile?token=AKBWDhpiQthVaz3plMQkg4ACAPGEQK1Wks5Ux-25wA%3D%3D</action>
21 <action type="move_directory_files">
22 <source_directory>./galaxy_tools/delly/Makefile</source_directory>
23 <destination_directory>.</destination_directory>
24 </action>
25 <action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action> 21 <action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action>
26 <action type="move_directory_files"> 22 <action type="move_directory_files">
27 <source_directory>.</source_directory> 23 <source_directory>.</source_directory>
28 <destination_directory>$INSTALL_DIR</destination_directory> 24 <destination_directory>$INSTALL_DIR</destination_directory>
29 </action> 25 </action>