Mercurial > repos > malbuquerque > delly
diff tool_dependencies.xml @ 9:da0135871f11 draft
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author | malbuquerque |
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date | Tue, 20 Jan 2015 16:51:59 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Jan 20 16:51:59 2015 -0500 @@ -0,0 +1,36 @@ +<?xml version="1.0"?> +<tool_dependency> + + <package name="boost" version="1.53.0"> + <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + + <package name="bamtools" version="2.3.0"> + <repository changeset_revision="ad46b5210186" name="package_bamtools_2_3_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + + <package name="seqtk" version="1.0.0"> + <repository changeset_revision="35f0f4568ded" name="package_seqtk_1_0_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + + <package name="delly" version="0.6.1"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action> + <action type="move_directory_files"> + <source_directory>$REPOSITORY_INSTALL_DIR/Makefile</source_directory> + <destination_directory>.</destination_directory> + </action> + <action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="set_environment"> + <environment_variable action="set_to" name="DELLY_DIR">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + </package> + + </tool_dependency>