16
|
1 <?xml version="1.0"?>
|
|
2 <tool_dependency>
|
|
3
|
|
4 <package name="blast+" version="2.2.26+">
|
|
5 <repository changeset_revision="85e43fb3f363" name="package_blast_plus_2_2_26" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
|
|
6 </package>
|
|
7
|
|
8 <package name="samtools" version="0.1.19">
|
|
9 <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
|
|
10 </package>
|
|
11
|
|
12 <package name="ucsc_user_apps" version="310">
|
|
13 <repository changeset_revision="f945f71702cc" name="package_ucsc_user_apps_310" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" />
|
|
14 </package>
|
|
15
|
|
16 <package name="perl_descriptive_statistics" version="3.0608">
|
|
17 <install version="1.0">
|
|
18 <actions>
|
|
19 <action type="download_by_url">http://search.cpan.org/CPAN/authors/id/S/SH/SHLOMIF/Statistics-Descriptive-3.0608.tar.gz</action>
|
|
20 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR</action>
|
|
21 <action type="shell_command">make</action>
|
|
22 <action type="shell_command">make install</action>
|
|
23 <action type="set_environment">
|
|
24 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5/site_perl</environment_variable>
|
|
25 </action>
|
|
26 </actions>
|
|
27 </install>
|
|
28 </package>
|
|
29
|
|
30 <package name="factera" version="1.4.3">
|
|
31 <install version="1.0">
|
|
32 <actions>
|
|
33 <action type="download_by_url">http://factera.stanford.edu/files/factera-v1.4.3.pl</action>
|
|
34 <action type="move_directory_files">
|
|
35 <source_directory>.</source_directory>
|
|
36 <destination_directory>$INSTALL_DIR</destination_directory>
|
|
37 </action>
|
|
38 <action type="set_environment">
|
|
39 <environment_variable action="set_to" name="FACTERA_DIR">$INSTALL_DIR</environment_variable>
|
|
40 </action>
|
|
41 </actions>
|
|
42 </install>
|
|
43 </package>
|
|
44
|
|
45 </tool_dependency>
|