Mercurial > repos > malbuquerque > factera
comparison factera/tool_dependencies.xml @ 4:bcee925a2db9 draft
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author | malbuquerque |
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date | Thu, 15 Jan 2015 20:17:00 -0500 |
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3:5b5ca3470d5a | 4:bcee925a2db9 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 | |
4 <package name="blast_plus_blast_plus_2_2_26" version="2.2.26"> | |
5 <repository changeset_revision="85e43fb3f363" name="package_blast_plus_2_2_26" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
6 </package> | |
7 | |
8 <package name="package_samtools_0_1_19" version="0.1.19"> | |
9 <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
10 </package> | |
11 | |
12 <package name="ucsc_user_apps" version="1.0.0"> | |
13 <repository changeset_revision="7d36c043e340" name="ucsc_user_apps" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
14 </package> | |
15 | |
16 <package name="factera_perl_dependency" version="1.4.3"> | |
17 <install version="1.0"> | |
18 <actions> | |
19 | |
20 <action type="download_by_url">http://search.cpan.org/CPAN/authors/id/S/SH/SHLOMIF/Statistics-Descriptive-3.0608.tar.gz</action> | |
21 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR</action> | |
22 <action type="shell_command">make</action> | |
23 <action type="shell_command">make install</action> | |
24 | |
25 <action type="set_environment"> | |
26 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5/site_perl</environment_variable> | |
27 </action> | |
28 | |
29 </actions> | |
30 </install> | |
31 </package> | |
32 | |
33 <package name="package_factera_1_4_3" version="1.4.3"> | |
34 <install version="1.0"> | |
35 <actions> | |
36 | |
37 <action type="download_by_url">http://factera.stanford.edu/files/factera-v1.4.3.pl</action> | |
38 | |
39 <action type="move_directory_files"> | |
40 <source_directory>.</source_directory> | |
41 <destination_directory>$INSTALL_DIR</destination_directory> | |
42 </action> | |
43 | |
44 <action type="set_environment"> | |
45 <environment_variable action="set_to" name="FACTERA_DIR">$INSTALL_DIR</environment_variable> | |
46 </action> | |
47 | |
48 </actions> | |
49 </install> | |
50 </package> | |
51 | |
52 </tool_dependency> |