Mercurial > repos > malbuquerque > factera
view factera/tool_dependencies.xml @ 12:14853655737f draft
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author | malbuquerque |
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date | Fri, 16 Jan 2015 14:22:35 -0500 |
parents | bec798deb59a |
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<?xml version="1.0"?> <tool_dependency> <package name="package_blast_plus_2_2_26" version="2.2.26"> <repository changeset_revision="85e43fb3f363" name="package_blast_plus_2_2_26" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="package_samtools_0_1_19" version="0.1.19"> <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="package_ucsc_user_apps" version="1.0.0"> <repository changeset_revision="11857fecc707" name="package_ucsc_user_apps" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="factera_perl_dependency" version="1.0.0"> <install version="1.0"> <actions> <action type="download_by_url">http://search.cpan.org/CPAN/authors/id/S/SH/SHLOMIF/Statistics-Descriptive-3.0608.tar.gz</action> <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR</action> <action type="shell_command">make</action> <action type="shell_command">make install</action> <action type="set_environment"> <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5/site_perl</environment_variable> </action> </actions> </install> </package> <package name="factera_1_4_3" version="1.4.3"> <install version="1.0"> <actions> <action type="download_by_url">http://factera.stanford.edu/files/factera-v1.4.3.pl</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="set_environment"> <environment_variable action="set_to" name="FACTERA_DIR">$INSTALL_DIR</environment_variable> </action> </actions> </install> </package> </tool_dependency>