Mercurial > repos > malbuquerque > package_bamtools_2_3_0

comparison tool_dependencies.xml @ 8:e6fbfcc95901 draft

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Uploaded
author malbuquerque
date Wed, 21 Jan 2015 17:25:59 -0500
parents 52eae2bb8a4d
children 031f77d360ea
comparison
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7:52eae2bb8a4d 8:e6fbfcc95901
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 3
4 <package name="cmake" version="3.1.0"> 4 <package name="cmake" version="3.1.0">
5 <repository changeset_revision="a18ccb33a785" name="package_cmake_3_1_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 5 <repository changeset_revision="782e014e71f9" name="package_cmake_3_1_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
6 </package> 6 </package>
7 7
8 <package name="samtools" version="0.1.18"> 8 <package name="samtools" version="0.1.18">
9 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 9 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
10 </package> 10 </package>
12 <package name="bamtools" version="2.3.0"> 12 <package name="bamtools" version="2.3.0">
13 <install version="1.0"> 13 <install version="1.0">
14 <actions> 14 <actions>
15 15
16 <action type="set_environment_for_install"> 16 <action type="set_environment_for_install">
17 <repository changeset_revision="a18ccb33a785" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu"> 17 <repository changeset_revision="782e014e71f9" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu">
18 <package name="cmake" version="3.1.0" /> 18 <package name="cmake" version="3.1.0" />
19 </repository> 19 </repository>
20 </action> 20 </action>
21 21
22 <action type="set_environment_for_install"> 22 <action type="set_environment_for_install">
24 <package name="samtools" version="0.1.18" /> 24 <package name="samtools" version="0.1.18" />
25 </repository> 25 </repository>
26 </action> 26 </action>
27 27
28 <action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action> 28 <action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action>
29 <action type="shell_command">pwd &gt; ~/whereami</action>
29 <action type="shell_command">mkdir build</action> 30 <action type="shell_command">mkdir build</action>
31 <action type="shell_command">pwd &gt; ~/whereami2</action>
30 <action type="change_directory">build</action> 32 <action type="change_directory">build</action>
33 <action type="shell_command">pwd &gt; ~/whereami3</action>
31 <action type="shell_command">cmake ..</action> 34 <action type="shell_command">cmake ..</action>
35 <action type="shell_command">pwd &gt; ~/whereami4</action>
32 <action type="shell_command">make</action> 36 <action type="shell_command">make</action>
37 <action type="shell_command">pwd &gt; ~/whereami5</action>
33 <action type="change_directory">..</action> 38 <action type="change_directory">..</action>
39 <action type="shell_command">pwd &gt; ~/whereami6</action>
34 40
35 <action type="move_directory_files"> 41 <action type="move_directory_files">
36 <source_directory>./</source_directory> 42 <source_directory>./</source_directory>
37 <destination_directory>$INSTALL_DIR</destination_directory> 43 <destination_directory>$INSTALL_DIR</destination_directory>
38 </action> 44 </action>