# HG changeset patch
# User malbuquerque
# Date 1421879159 18000
# Node ID e6fbfcc95901300aeda38e6746f3bf80ce2b5466
# Parent  52eae2bb8a4d75ef1f654beb094a5409cdac91f5
Uploaded

diff -r 52eae2bb8a4d -r e6fbfcc95901 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jan 21 15:08:12 2015 -0500
+++ b/tool_dependencies.xml	Wed Jan 21 17:25:59 2015 -0500
@@ -2,7 +2,7 @@
 <tool_dependency>
 
 		<package name="cmake" version="3.1.0">
-			<repository changeset_revision="a18ccb33a785" name="package_cmake_3_1_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+			<repository changeset_revision="782e014e71f9" name="package_cmake_3_1_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
 		</package>
 
 		<package name="samtools" version="0.1.18">
@@ -14,7 +14,7 @@
 				<actions>
 
 					<action type="set_environment_for_install">
-						<repository changeset_revision="a18ccb33a785" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu">
+						<repository changeset_revision="782e014e71f9" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu">
 							<package name="cmake" version="3.1.0" />
 						</repository>
 					</action>
@@ -26,11 +26,17 @@
 					</action>
 	
 					<action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action>
+					<action type="shell_command">pwd &gt; ~/whereami</action>
 					<action type="shell_command">mkdir build</action>
+					<action type="shell_command">pwd &gt; ~/whereami2</action>
 					<action type="change_directory">build</action>
+					<action type="shell_command">pwd &gt; ~/whereami3</action>
 					<action type="shell_command">cmake ..</action>
+					<action type="shell_command">pwd &gt; ~/whereami4</action>
 					<action type="shell_command">make</action>
+					<action type="shell_command">pwd &gt; ~/whereami5</action>
 					<action type="change_directory">..</action>
+					<action type="shell_command">pwd &gt; ~/whereami6</action>
 
 					<action type="move_directory_files">
 						<source_directory>./</source_directory>