comparison tool_dependencies.xml @ 0:1b86c284b6c6 draft

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0:1b86c284b6c6

<?xml version="1.0"?>
<tool_dependency>
	<package name="ucsc_user_apps" version="310" type="package">
		<install version="1.0">
			<actions>
				<action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/userApps.v310.src.tgz</action>
				<action type="shell_command">sed 's/export USE_SSL 1/export USE_SSL 0/g' Makefile > Makefiletmp</action>
				<action type="shell_command">mv Makefiletmp Makefile</action>
				<action type="shell_command">make</action>
				<action type="move_directory_files">
					<source_directory>./bin</source_directory>
					<destination_directory>$INSTALL_DIR/bin</destination_directory>
				</action>
				<action type="set_environment">
					<environment_variable name="UCSCUSERAPPS" action="set_to">$INSTALL_DIR</environment_variable>
					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
				</action>
			</actions>
		</install>
		<readme>
		UCSC User Apps may take a moment for installation as it builds all utililities.
		Post installation, all tools will be available as command line executables.
		</readme>
	</package>
</tool_dependency>