Mercurial > repos > malbuquerque > package_ucsc_user_apps_310

diff tool_dependencies.xml @ 2:f945f71702cc draft default tip

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author malbuquerque
date Fri, 16 Jan 2015 17:15:59 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jan 16 17:15:59 2015 -0500
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+	<package name="ucsc_user_apps" version="310">
+		<install version="1.0">
+			<actions>
+				<action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/userApps.v310.src.tgz</action>
+				<action type="shell_command">sed 's/export USE_SSL 1/export USE_SSL 0/g' Makefile > Makefiletmp</action>
+				<action type="shell_command">mv Makefiletmp Makefile</action>
+				<action type="shell_command">make</action>
+				<action type="move_directory_files">
+					<source_directory>./bin</source_directory>
+					<destination_directory>$INSTALL_DIR/bin</destination_directory>
+				</action>
+				<action type="set_environment">
+					<environment_variable name="UCSCUSERAPPS" action="set_to">$INSTALL_DIR</environment_variable>
+					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+				</action>
+			</actions>
+		</install>
+		<readme>
+		UCSC User Apps may take a moment for installation as it builds all utililities.
+		Post installation, all tools will be available as command line executables.
+		</readme>
+	</package>
+</tool_dependency>