comparison modulated_modularity_clustering.xml @ 2:caba07f41453 draft default tip

"planemo upload for repository https://github.com/secimTools/SECIMTools/tree/main/galaxy commit 498abad641099412df56f04ff6e144e4193bbc34-dirty"

1:2e7d47c0b027

        <param name="input" type="data" format="tabular" label="Wide Dataset" help="Input your tab-separated wide format dataset. If not tab separated see TIP below." />
        <param name="design" type="data" format="tabular" label="Design Dataset" help="Input your design file (tab-separated). Note you need a 'sampleID' column. If not tab separated see TIP below."/>
        <param name="uniqID" type="text" size="30" label="Unique Feature ID" help="Name of the column in your wide dataset that has unique identifiers.." />
        <param name="sigmaLow" type="float" size="6" value="0.05" label="Lower sigma bound" help="Default: 0.05." />
        <param name="sigmaHigh" type="float" size="6" value="0.50" label="Upper sigma bound" help="Default: 0.50." />
        <param name="sigmaNum" type="float" size="6" value="451" label="Number of Sigma values" help="Number of values of sigma to search. Default: 451." />
        <param name="corr" type="select" value="pearson" label="Correlation method" help="Select correlation method for preliminary correlation before clustering. Default: Pearson." >
            <option value="pearson" selected="true">Pearson</option>
            <option value="kendall" selected="true">Kendall</option>
            <option value="spearman" selected="true">Spearman</option>
        </param>

2:caba07f41453

        <param name="input" type="data" format="tabular" label="Wide Dataset" help="Input your tab-separated wide format dataset. If not tab separated see TIP below." />
        <param name="design" type="data" format="tabular" label="Design Dataset" help="Input your design file (tab-separated). Note you need a 'sampleID' column. If not tab separated see TIP below."/>
        <param name="uniqID" type="text" size="30" label="Unique Feature ID" help="Name of the column in your wide dataset that has unique identifiers.." />
        <param name="sigmaLow" type="float" size="6" value="0.05" label="Lower sigma bound" help="Default: 0.05." />
        <param name="sigmaHigh" type="float" size="6" value="0.50" label="Upper sigma bound" help="Default: 0.50." />
        <param name="sigmaNum" type="integer" size="6" value="451" label="Number of Sigma values" help="Number of values of sigma to search. Default: 451." />
        <param name="corr" type="select" value="pearson" label="Correlation method" help="Select correlation method for preliminary correlation before clustering. Default: Pearson." >
            <option value="pearson" selected="true">Pearson</option>
            <option value="kendall" selected="true">Kendall</option>
            <option value="spearman" selected="true">Spearman</option>
        </param>